BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007818
         (588 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/588 (72%), Positives = 502/588 (85%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TGLI  GFA SRLIAFCAISE ++LDYCT ILFN +NPN+FSWNVAIRGFL++   R
Sbjct: 29  MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 88

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EAV LYK++L+  GT+PDN+TYPLLFK CA L L  +G EI GHVL LGFD D++V NAV
Sbjct: 89  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 148

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH+ VSCGDL  A  +FD+SCVR+LVSWNS+ING+VR G+  EA+  +R+M++E ++PDE
Sbjct: 149 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 208

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMIG+VS+CAQLEDL+LGRE H YI E+GL LTVPLANALMDMY+KCG LESA ++FDS
Sbjct: 209 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 268

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M NKT+VS TTM+VGYA+ G LD+A K+FD++P+K VVPWNA+IGGYV A R KEALALF
Sbjct: 269 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 328

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           +EMQA  I PD VT V CLSACSQLGALD GIWIH +IEK   +LNV LGTAL+DMYAKC
Sbjct: 329 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 388

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G I KA+QVF E+P RNSLT+TAII GLALHG A  AI+YFSEMI   +MPDE+TFLG+L
Sbjct: 389 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 448

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SACCHGGLV+EGRKYF+QMSS F LSPKLKHYSCMVDLLGR+GLLEEAE+LI+SMP+ AD
Sbjct: 449 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD 508

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            VVWGALFFACR+HGNV +GERAA KLL++DP DSGIYVLLANMY ++ MW+EAGK RK+
Sbjct: 509 AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKL 568

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           M +RGVEKTPGCSSIEVNG++YEFIVRDKSHP+ EQIY+CL+QLTR  
Sbjct: 569 MRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 616


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/588 (70%), Positives = 490/588 (83%), Gaps = 15/588 (2%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TGLI  GFA SRLIAFCAISE ++LDYCT ILFN +NPN+FSWNVAIRGFL++   R
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EAV LYK++L+  GT+PDN+TYPLLFK CA L L  +G EI GHVL LGFD D++V NAV
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH+ VSCGDL  A  +FD+SCVR+LVSWNS+ING+VR G+  EA+  +R+M++E ++PDE
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMIG+VS+CAQLEDL+LGRE H YI E+GL LTVPLANALMDMY+KCG LESA ++FDS
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 240

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M NKT+VS TTM+               FD++P+K VVPWNA+IGGYV A R KEALALF
Sbjct: 241 MTNKTMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKEALALF 285

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           +EMQA  I PD VT V CLSACSQLGALD GIWIH +IEK   +LNV LGTAL+DMYAKC
Sbjct: 286 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 345

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G I KA+QVF E+P RNSLT+TAII GLALHG A  AI+YFSEMI   +MPDE+TFLG+L
Sbjct: 346 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 405

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SACCHGGLV+EGRKYF+QMSS F LSPKLKHYSCMVDLLGR+GLLEEAE+LI+SMP+ AD
Sbjct: 406 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD 465

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            VVWGALFFACR+HGNV +GERAA KLL++DP DSGIYVLLANMY ++ MW+EAGK RK+
Sbjct: 466 AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKL 525

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           M +RGVEKTPGCSSIEVNG++YEFIVRDKSHP+ EQIY+CL+QLTR  
Sbjct: 526 MRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 573


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/587 (69%), Positives = 482/587 (82%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLIS GFA SRL+AFCAISE +NLDYC KIL N  N N FSWN+AIRG++E+    
Sbjct: 77  MISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPI 136

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            AV LY+ MLR G   PDN+TYPLLFKVCA   L +   EI GHV++LGFD D++VHNA+
Sbjct: 137 NAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAI 196

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IHV VSCG+L  A  +FDESCVR+LVSWNS+ING+VR G   EA  L+  M    V PDE
Sbjct: 197 IHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDE 256

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMIG+VSA AQLE+L LGR++H  I E GL LTVPLANALMDMY+KC  +E+A+ +F++
Sbjct: 257 VTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFEN 316

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  KTVVS TTM++GYAKFG L+ A ++F+++PEK VV WNA+IGG+VQAKRSKEALALF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           HEMQA+ + PD +T V+CLSACSQLGALD GIW+H +++K N  +NV LGTALVDMYAKC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           GNI KA+QVF EMP RNSLT+TAII GLALHG+   AISYFSEMI +GL+PDEITF+G+L
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SACCHGGLVD+GR YF QM+S + +SPKLKHYSC+VDLLGR+G LEEAE+LIRSMP   D
Sbjct: 497 SACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD 556

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            VVWGALFF  R+HGNV +GERAA KLLELDP D GIYVLLANMY D+NMWE+A KVRKM
Sbjct: 557 AVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKM 616

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           MEERGVEKTPGCSSIE+NGL+Y+FI+RDKSHP+ E+IY+CL +LTR 
Sbjct: 617 MEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQ 663


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/587 (69%), Positives = 482/587 (82%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLIS GFA SRL+AFCAISE +NLDYC KIL N  N N FSWN+AIRG++E+    
Sbjct: 77  MISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPI 136

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            AV LY+ MLR G   PDN+TYPLLFKVCA   L +   EI GHV++LGFD D++VHNA+
Sbjct: 137 NAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAI 196

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IHV VSCG+L  A  +FDESCVR+LVSWNS+ING+VR G   EA  L+  M    V PDE
Sbjct: 197 IHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDE 256

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMIG+VSA AQLE+L LGR++H  I E GL LTVPLANALMDMY+KC  +E+A+ +F++
Sbjct: 257 VTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFEN 316

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  KTVVS TTM++GYAKFG L+ A ++F+++PEK VV WNA+IGG+VQAKRSKEALALF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           HEMQA+ + PD +T V+CLSACSQLGALD GIW+H +++K N  +NV LGTALVDMYAKC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           GNI KA+QVF EMP RNSLT+TAII GLALHG+   AISYFSEMI +GL+PDEITF+G+L
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SACCHGGLVD+GR YF QM+S + +SPKLKHYSC+VDLLGR+G LEEAE+LIRSMP   D
Sbjct: 497 SACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD 556

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            VVWGALFF  R+HGNV +GERAA KLLELDP D GIYVLLANMY D+NMWE+A KVRKM
Sbjct: 557 AVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKM 616

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           MEERGVEKTPGCSSIE+NGL+Y+FI+RDKSHP+ E+IY+CL +LTR 
Sbjct: 617 MEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQ 663


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/581 (69%), Positives = 474/581 (81%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TGLI  GFA SRLI+FCAISES+NLDYC KIL N+QNPN FSWN  IRG +E+   +
Sbjct: 76  MILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQ 135

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + + LYK+ML   G RPDN+TY  LFKVCA+L L ++G+EI G VLK+GFD DMY++N +
Sbjct: 136 KGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGI 195

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH+ VS G+ GLA  VFDE CVR+LVSWNSLING+VR   PREA+ +++ M  E V+PDE
Sbjct: 196 IHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDE 255

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMIG+VSACAQLE L LGREIH YI ESGL L + L NALMDMYVKCG LE+ + +FD+
Sbjct: 256 VTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDN 315

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  KTVVS TTMIVGYAK G LD+A K+F D+PEK VV WNA+IG  VQA  S EAL LF
Sbjct: 316 MRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELF 375

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EMQ + +KPD VT +HCLSACSQLGALD G+W H +I+K N +L+V LGTAL+DMYAKC
Sbjct: 376 REMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKC 435

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           GN+ KALQVF+EMP RNSLT+TAIIGGLAL+G   DAI YFS+MI  GLMPDEITFLG+L
Sbjct: 436 GNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVL 495

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           +ACCHGGLV+EGRKYF QM S F LSP+ KHYSCMV+LLGR+GLLEEAE+LI++MPM AD
Sbjct: 496 TACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEAD 555

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            +VWGALFFAC +H N+ IGERAA KLL+LDP DSGIYVLLANMYR++  WEEA  +RKM
Sbjct: 556 AMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKM 615

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           M ERGVEKTPG SSIEVNG++ EFIVRDKSHP+ EQIY+C 
Sbjct: 616 MMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYECF 656


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/588 (64%), Positives = 479/588 (81%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLI +GFA SRL+AFCA+SESK LDYCT+IL+ ++  N FSWN AIRG++E+G + 
Sbjct: 80  MVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIE 139

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
               LYK+ML  G  +PDN TYPLL K C       LG  + GHVLK GF+ D++VHNA 
Sbjct: 140 GGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNAS 199

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I + +SCG+L +A +VF++S VR+LV+WNS+I G V+ G   EAI+++++M+ E+V P+E
Sbjct: 200 ITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNE 259

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +TMIGM+S+C+Q++DLNLG+E H YI E GL  T+PL NALMDMYVKCG+L +A  +FD+
Sbjct: 260 ITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDN 319

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  KT+VS TTM++GYA+FGFLD+AR+I   +PEK VVPWNAII G VQAK+ KEALALF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           HEMQ   I+PD VT V+CLSACSQLGALD GIWIH +IE+   +++V LGTALVDMYAKC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           GNIA+ALQVF E+P+RN LT+TA+I GLALHG A DA+SYFS+MI +G++PDEITFLG+L
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SACCHGGLV+EGRKYF++MSS F +SPKLKHYSCMVDLLGR+G LEEAE+L+++MPMAAD
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             V GALFFACR++GNV IGER A KLLE+DPQDSG YVLLA+MY ++ MW+EA   RK+
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           M ++GVEKTPGCS +E+NG+++EF+VRD SHP+ E IY+CLV LT+  
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQL 667


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/590 (64%), Positives = 465/590 (78%), Gaps = 2/590 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M I GLI   FA SRLIAFCA+SES+ LDY  KIL  ++NPN FSWNV IRGF E+   +
Sbjct: 76  MIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPK 135

Query: 61  EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           E+  LYKQMLR+G   +RPD+FTYP+LFKVCA L L  LG+ I GHVLKL  ++  +VHN
Sbjct: 136 ESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHN 195

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           A IH+F SCGD+  A  VFDES VR+LVSWN LING+ + G   +AI +++ M+ E V+P
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D+VTMIG+VS+C+ L DLN G+E + Y+ E+GL +T+PL NALMDM+ KCG +  A  IF
Sbjct: 256 DDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D++  +T+VS TTMI GYA+ G LD++RK+FDD+ EK VV WNA+IGG VQAKR ++ALA
Sbjct: 316 DNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALA 375

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF EMQ +  KPD +T +HCLSACSQLGALD GIWIHR+IEK + +LNV LGT+LVDMYA
Sbjct: 376 LFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYA 435

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCGNI++AL VFH +  RNSLTYTAIIGGLALHG A  AISYF+EMI  G+ PDEITF+G
Sbjct: 436 KCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG 495

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSACCHGG++  GR YF+QM S F L+P+LKHYS MVDLLGR+GLLEEA++L+ SMPM 
Sbjct: 496 LLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME 555

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
           AD  VWGAL F CR+HGNV +GE+AA KLLELDP DSGIYVLL  MY ++NMWE+A + R
Sbjct: 556 ADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRAR 615

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +MM ERGVEK PGCSSIEVNG++ EFIVRDKS PE E+IYD L  L RH 
Sbjct: 616 RMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHM 665


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/566 (64%), Positives = 463/566 (81%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLI +GFA SRL+AFCA+SESK LDYCT+IL+ ++  N FSWN AIRG++E+G + 
Sbjct: 80  MVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIE 139

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
               LYK+ML  G  +PDN TYPLL K C       LG  + GHVLK GF+ D++VHNA 
Sbjct: 140 GGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNAS 199

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I + +SCG+L +A +VF++S VR+LV+WNS+I G V+ G   EAI+++++M+ E+V P+E
Sbjct: 200 ITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNE 259

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +TMIGM+S+C+Q++DLNLG+E H YI E GL  T+PL NALMDMYVKCG+L +A  +FD+
Sbjct: 260 ITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDN 319

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  KT+VS TTM++GYA+FGFLD+AR+I   +PEK VVPWNAII G VQAK+ KEALALF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           HEMQ   I+PD VT V+CLSACSQLGALD GIWIH +IE+   +++V LGTALVDMYAKC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           GNIA+ALQVF E+P+RN LT+TA+I GLALHG A DA+SYFS+MI +G++PDEITFLG+L
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SACCHGGLV+EGRKYF++MSS F +SPKLKHYSCMVDLLGR+G LEEAE+L+++MPMAAD
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             V GALFFACR++GNV IGER A KLLE+DPQDSG YVLLA+MY ++ MW+EA   RK+
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIV 566
           M ++GVEKTPGCS +E+NG+++EF++
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVL 645


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/590 (62%), Positives = 452/590 (76%), Gaps = 20/590 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M ITGL+   FA SRLIAFCA+SES+ L+YC KIL  ++NPN+FSWNV IRGF E+   +
Sbjct: 1   MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60

Query: 61  EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           +AV  YKQMLR G   +RPD+FTYP+LFKVCA L L  LG+ I GHV KL  ++  +VHN
Sbjct: 61  DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           A IH+F SCG++  A  VFDES VR+LVSWN LING+ + G   +AI +++ M+ E V+P
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D+VTMIG+VS+CA L DLN G+E + Y+  +GL +T+PLANALMDM+ KCG +  A  IF
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF 240

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D++  +T+VS                  K+FDD+ EK VV WNA+IGG VQAKRS++ALA
Sbjct: 241 DNLEKRTIVS------------------KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALA 282

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF EMQ +   PD +T +HCLSACSQLGALD GIWIHR+IEK + +LNV LGT+LVDMYA
Sbjct: 283 LFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYA 342

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCGNI++AL VFH +  RNSLTYTAIIGGLALHG A  AISYF+EMI  G+ PDEITF+G
Sbjct: 343 KCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG 402

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSACCHGG++  GR YF+QM S F L+P+LKHYS MVDLLGR+GLLEEA++L+ SMPM 
Sbjct: 403 LLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPME 462

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
           AD  VWGAL F CR+HGNV +GE+AA KLLELDP DSGIYVLL  MY ++NMWE+A + R
Sbjct: 463 ADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRAR 522

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +MM ERGVEK PGCSSIEVNG++ EFIVRDKS PE E+IYDCL  L  H 
Sbjct: 523 RMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKIYDCLHCLGTHM 572


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/597 (53%), Positives = 433/597 (72%), Gaps = 14/597 (2%)

Query: 3   ITGLIS-HGFAP--SRLIAFCAISES---KNLDYCTKILFNVQNP--NSFSWNVAIRGFL 54
           ++GL+S H  +P   RL+A  A S+    + L +   IL ++ +P  ++F +N A R   
Sbjct: 33  VSGLLSSHSTSPFIDRLVAAFAHSDPASPRPLLHALAILASLPSPPDSAFPYNAAFRALS 92

Query: 55  ETGKM----REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF 110
                    R  + LY+ +L +G  RPD+ T+P L K CA L  R  G  + GHV KLGF
Sbjct: 93  LCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGF 152

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
             D++V NA +H +   G +  A  +FDES VR++VSWN+LI G+VRSG PREA+ LF  
Sbjct: 153 SADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWR 212

Query: 171 MQLE--RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
           +  +   V PDEVT+IG VS CAQ+ DL LG+ +H ++   G+  TV L NA+MDMYVKC
Sbjct: 213 LAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKC 272

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G LE A  +F+ + N+T VS TTMIVG+A+ G ++ AR +FD++PE+ V PWNA++ GYV
Sbjct: 273 GSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYV 332

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           Q K+ KEA+ALFHEMQ + + P+ +T V+ LSACSQLGAL+ G+W+H +I++   +L+V 
Sbjct: 333 QNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVA 392

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           LGT+LVDMYAKCGNI KA+ VF+E+P +N+LT+T++I GLA HG A +AI YF  MI +G
Sbjct: 393 LGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLG 452

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           L PDEITF+G+LSACCH GLV+ GR++F+ M + + L  K+KHYSCM+DLLGR+G L+EA
Sbjct: 453 LQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEA 512

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528
           EQL+ +MPM  D VVWGALFFACR+HGN+++GE+AAMKL+ELDP DSGIYVLLANMY ++
Sbjct: 513 EQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEA 572

Query: 529 NMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           NM ++A KVR MM   GVEK PGCS IE+NG+++EFIV+DKSH +   IYDCL ++T
Sbjct: 573 NMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEIT 629


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/594 (54%), Positives = 429/594 (72%), Gaps = 15/594 (2%)

Query: 6   LISHGFAP--SRLIAFCAISES---KNLDYCTKILFNVQNP--NSFSWNVAIRGFLETGK 58
           L SH  +P   RL+A  A+S+    + L +   IL ++ +P  ++  +N A R  L    
Sbjct: 37  LSSHSTSPFSDRLVAAFALSDPASPRPLLHALAILASLPSPPDSASPYNAAFRA-LSLCP 95

Query: 59  MREAVD-----LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD 113
            R  VD     LY+ +L +   RPD+ T+P L K CA L  R  G  + GHV KLGF  D
Sbjct: 96  HRHLVDRHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSAD 155

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-- 171
           ++V NA +H +   G + LA  +FDES  R++VSWN+LI G+VRSG PREA+ LF  +  
Sbjct: 156 VFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVE 215

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
             + V PDEVTMIG VS CAQ+ DL LG+ +H ++   G+  TV L NA+MDMYVKCG L
Sbjct: 216 DGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSL 275

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           E A+ +F+ + NKTVVS TTMIVG+A+ G ++ AR +FD++PE+ V PWNA++ GYVQ K
Sbjct: 276 ELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNK 335

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           + KEA+ALFHEMQ + + P+ +T V+ LSACSQLGAL+ G+W+H +I++    L+V LGT
Sbjct: 336 QGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGT 395

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           +LVDMYAKCGNI KA+ +F E+P++N+LT+TA+I GLA HG A +AI YF  MI +GL P
Sbjct: 396 SLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQP 455

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           DEITF+G+LSACCH GLV EGR++F+ M   + L  K+KHYSCM+DLLGR+G L+EAEQL
Sbjct: 456 DEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQL 515

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           + +MPM  D VVWGALFFACR+HGN+++GE+AAMKL+ELDP DSGIYVLLANMY ++NM 
Sbjct: 516 VNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMR 575

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           ++A KVR MM   GVEK PGCS IE+NG+++EFIV+DKSH +   IYDCL  +T
Sbjct: 576 KKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGIT 629


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/550 (56%), Positives = 409/550 (74%), Gaps = 7/550 (1%)

Query: 41  PNSFS-WNVAIRGF---LETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           P+S S +N A+R      + G +   + LY  +LR+   RPD+ T+P L K CA L  R 
Sbjct: 80  PDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSA--RPDHLTFPFLLKACARLQERN 137

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G  + G+VL LGF  D++V NA +H    C  +  A  +FD S VR+LVSWN+LI G+V
Sbjct: 138 YGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYV 197

Query: 157 RSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
           R G PREA+ +F  M  +  V PDEVTMIG+VS  AQL DL LGR +H Y+   G+  TV
Sbjct: 198 RRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTV 257

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
            L N +MDMY+KCG LE A+ +F+ +  KT+VS TTMIVGYA+FG +D ARK+FD++PE+
Sbjct: 258 RLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPER 317

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            V PWNA++ GYVQ KR KEAL LFH+MQ   ++PD +T V+ LSACSQLGAL+ G+W+H
Sbjct: 318 DVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVH 377

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +I++   +L+V+LGT LVDMY+KCGNI KA++VF E+PE+N+LT+TA+I GLA HG A 
Sbjct: 378 HYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHAD 437

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            AI YF  MI +GL PDEITF+G+LSACCH GLV EG+++F+ M S + L  K+KHYSCM
Sbjct: 438 VAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCM 497

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLLGR+G L+EAE L+ +MPM  D VVWGALFFACR+HGN+++GE+AAMKL+ELDP DS
Sbjct: 498 VDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDS 557

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
           GIYVLLANMY ++NM ++A KVR MM   GVEK PGCS IE+NG+++EFIV+DKSH ++ 
Sbjct: 558 GIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIA 617

Query: 576 QIYDCLVQLT 585
            IYDCL ++T
Sbjct: 618 AIYDCLHEIT 627



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 108/215 (50%), Gaps = 2/215 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   +   + F WN  + G+++  + +EA+ L+  M +     PD+ T   L  
Sbjct: 304 MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDM-QEAMVEPDDITMVNLLS 362

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ LG   +G  +  ++ +    + + +   ++ ++  CG++  A  VF E   +N ++
Sbjct: 363 ACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALT 422

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYI 206
           W ++I+G    G    AI+ F+ M    ++PDE+T IG++SAC     +  G+E     +
Sbjct: 423 WTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMV 482

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           S+  L   +   + ++D+  + G L+ AE + ++M
Sbjct: 483 SKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTM 517


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/551 (55%), Positives = 403/551 (73%), Gaps = 10/551 (1%)

Query: 45  SWNVAIRGFLET--------GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++N AIR    +        G +R  + LY+ +LR+G  RPD+ T+P L K CA L    
Sbjct: 83  AYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWG 142

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G     HVL+LG D D++V NA  H     G +  A  +FD S VR+LVSWN+LI G+V
Sbjct: 143 YGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYV 202

Query: 157 RSGFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           R G P EA+ LF  M  E   V PDEVTMI  VS C Q+ DL LGR +H ++   G++ T
Sbjct: 203 RRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCT 262

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V L NALMDMY+KCG LE A+ +F+ + ++TVVS TTMIVG+AKFG +D ARK+FD++PE
Sbjct: 263 VRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPE 322

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           + V PWNA++ GYVQ K+ KEAL+LFHEMQ   + PD +T V+ L+ACSQLGAL+ G+W+
Sbjct: 323 RDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWV 382

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           HR+IEK     +V LGT+L+DMYAKCGNI KA+ +F E+PE+N+LT+TA+I GLA HG A
Sbjct: 383 HRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHA 442

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +AI +F  MI +G  PDEITF+G+LSACCH GLV EGR++F+ M + + L  K+KHYSC
Sbjct: 443 NEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSC 502

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           M+DLLGR+G L+EAEQL+ +MPM  D VVWGA+FFACR+ GN+S+GE+AAMKL+E+DP D
Sbjct: 503 MIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSD 562

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
           SGIYVLLANMY ++NM ++A KVR MM   GVEK PGCS IE+NG+++EFIV+DKSH + 
Sbjct: 563 SGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDS 622

Query: 575 EQIYDCLVQLT 585
             IYDCL ++T
Sbjct: 623 HAIYDCLHEIT 633



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 109/216 (50%), Gaps = 4/216 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   +   + F WN  + G+++  + +EA+ L+ +M +     PD  T   L  
Sbjct: 310 MDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEM-QEASVVPDEITMVNLLT 368

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ LG   +G  +  ++ K      + +  ++I ++  CG++  A ++F E   +N ++
Sbjct: 369 ACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALT 428

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W ++I G    G   EAI  FR M     +PDE+T IG++SAC     +  GRE  + + 
Sbjct: 429 WTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREF-FSLM 487

Query: 208 ESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM 241
           E+   L   + +   ++D+  + G L+ AE++ ++M
Sbjct: 488 ETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTM 523


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 262/579 (45%), Positives = 381/579 (65%), Gaps = 1/579 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGL    F+ SRLI   A+S   +LDY  ++   + +PN ++WN  IR +  +    
Sbjct: 58  MLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH 117

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +++ ++ +ML      PD FT+P L K  + L   F G    G V+K+    D+++ N++
Sbjct: 118 QSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSL 177

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH +  CG+LGL   VF     R++VSWNS+I  FV+ G P EA+ LF++M+ + V+P+ 
Sbjct: 178 IHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +TM+G++SACA+  D   GR +H YI  + +  ++ L+NA++DMY KCG +E A+ +FD 
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K +VS TTM+VGYAK G  D A+ IFD +P + +  WNA+I  Y Q  + KEAL LF
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 357

Query: 301 HEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           HE+Q +   KPD VT V  LSAC+QLGA+D G WIH +I+K+   LN  L T+L+DMY K
Sbjct: 358 HELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCK 417

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++ KAL VFH +  ++   ++A+I GLA+HG   DAI+ FS+M    + P+ +TF  I
Sbjct: 418 CGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNI 477

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H GLV+EGR +F QM  ++ + P +KHY+CMVD+LGR+GLLEEA +LI  MPMA 
Sbjct: 478 LCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAP 537

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VWGAL  AC +H NV + E+A  +L+EL+P + G YVLL+N+Y  +  W+    +RK
Sbjct: 538 AASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRK 597

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +M + G++K PGCSSIEV+G+++EF+V D SHP  ++IY
Sbjct: 598 LMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 636


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/457 (59%), Positives = 332/457 (72%), Gaps = 30/457 (6%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEPDEVTMIGMV 187
           DL    N+   +   N  SWN  I GF+ S  PREA+ L+ R +Q +  +PD  T   + 
Sbjct: 99  DLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLF 158

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG------------------ 229
            ACA+L  + +G EI  ++   G    + ++NA++ + V CG                  
Sbjct: 159 KACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLV 218

Query: 230 -----------KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
                       LESA ++FDSM NKT+VS TTM+VGYA+ G LD+A K+FD++P+K VV
Sbjct: 219 SWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 278

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           PWNA+IGGYV A R KEALALF+EMQA  I PD VT V CLSACSQLGALD GIWIH +I
Sbjct: 279 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI 338

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
           EK   +LNV LGTAL+DMYAKCG I KA+QVF E+P RNSLT+TAII GLALHG A  AI
Sbjct: 339 EKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 398

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
           +YFSEMI   +MPDE+TFLG+LSACCHGGLV+EGRKYF+QMSS F LSPKLKHYSCMVDL
Sbjct: 399 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 458

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGR+GLLEEAE+LI+SMP+ AD VVWGALFFACR+HGNV +GERAA KLL++DP DSGIY
Sbjct: 459 LGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIY 518

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           VLLANMY ++ MW+EAGK RK+M +RGVEKTP   S+
Sbjct: 519 VLLANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWSL 555



 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/457 (39%), Positives = 244/457 (53%), Gaps = 93/457 (20%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TGLI  GFA SRLIAFCAISE ++LDYCT ILFN +NPN+FSWNVAIRGFL++   R
Sbjct: 73  MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 132

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EAV LYK++L+  GT+PDN+TYPLLFK CA L L  +G EI GHVL LGFD D++V NAV
Sbjct: 133 EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 192

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN--------------------------- 153
           IH+ VSCGDL  A  +FD+SCVR+LVSWNS+IN                           
Sbjct: 193 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTM 252

Query: 154 --GFVRSGFPREAIRLF-------------------------------RDMQLERVEPDE 180
             G+ +SG    A +LF                                +MQ   + PDE
Sbjct: 253 VVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDE 312

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+  +SAC+QL  L++G  IH YI +  L+L V L  AL+DMY KCGK+  A ++F  
Sbjct: 313 VTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVF-- 370

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                         +LP +  + W AII G      +  A+A F
Sbjct: 371 -----------------------------QELPGRNSLTWTAIISGLALHGNAHGAIAYF 401

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAK 359
            EM    + PD VT +  LSAC   G +++G  +  +   K N +  +   + +VD+  +
Sbjct: 402 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 461

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKAL 395
            G + +A ++   MP E +++ + A+     +HG  L
Sbjct: 462 AGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVL 498


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/585 (44%), Positives = 376/585 (64%), Gaps = 1/585 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGL     + ++L   CA+S   +LDY  K+   +  PN ++WN  IR F  + K  
Sbjct: 53  MLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPI 112

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + + ++ QML      P+++T+P + K    +     G  I G V+K  F  D+++ N++
Sbjct: 113 QGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSL 172

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH + S GDL  A  VF +   +++VSWNS+I+GFV+ G P EA++LF+ M++E   P+ 
Sbjct: 173 IHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNR 232

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+G++SACA+  DL  GR    YI  +G+ + + L+NA++DMYVKCG LE A  +FD 
Sbjct: 233 VTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDK 292

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K +VS TTMI GYAK G  D AR++FD +P + +  WNA+I  Y Q  + KEALA+F
Sbjct: 293 MEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIF 352

Query: 301 HEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
            E+Q     KP+ VT    L+AC+QLGA+D G WIH +I+K+   LN  + T+L+DMY+K
Sbjct: 353 RELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSK 412

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++ KAL+VF+ +  R+   ++A+I GLA+HG    AI  FS+M    + P+ +TF  +
Sbjct: 413 CGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNL 472

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H GLVDEGR +F QM  ++ + P  KHY+CMVD+LGR+G LEEA +LI  MP+  
Sbjct: 473 LCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVP 532

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VWGAL  ACR++GNV + E A  +LLE D  + G YVLL+N+Y  +  W+   ++R+
Sbjct: 533 SASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQ 592

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            M+  G+EK PGCSSIEVNG+++EF+V D SHP   +IY  L ++
Sbjct: 593 HMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEI 637


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 245/582 (42%), Positives = 389/582 (66%), Gaps = 1/582 (0%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGLIS+   P+++IAFC   E  +++Y   +   +  PN F WN  I+G+   G    AV
Sbjct: 45  TGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAV 104

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            +Y +ML  G   PD +TYP L K          G E+  H++KLGF  +++V NA+IH+
Sbjct: 105 SMYCEMLERG-VMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHL 163

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +   G++ +A  VFD S   ++V+WN +I+G+ RS    E+++LF +M+  RV P  +T+
Sbjct: 164 YSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITL 223

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + ++SAC++L+DLN+G+ +H Y+ +  +     L NAL+DMY  CG +++A  IFD+M +
Sbjct: 224 VSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKS 283

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + V+S T ++ G+   G + +AR  FD +PE+  V W A+I GY+Q  R KE L+LF EM
Sbjct: 284 RDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM 343

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           QA  IKPD  T V  L+AC+ LGAL+ G WI  +I+K    ++  +G AL+DMY  CGN+
Sbjct: 344 QAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNV 403

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA+++F+ MP R+ +++TA+I GLA++G   +A+  FS+M+   + PDE+T +G+L AC
Sbjct: 404 EKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCAC 463

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H G+VD+G+K+FA+M++   + P + HY CMVDLLGR+G L+EA ++I++MP+  + +V
Sbjct: 464 THSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIV 523

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WG+L  ACR+H +  + E AA ++LEL+P++  +YVLL N+Y   N WE+  +VRK+M +
Sbjct: 524 WGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMD 583

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           RG++KTPGCS IE+NG ++EF+  D+ HP+ ++IY  L +++
Sbjct: 584 RGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMS 625


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/587 (44%), Positives = 388/587 (66%), Gaps = 6/587 (1%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG    G   ++ +  C      NL Y  +I   +  P  F +N+ I+ F + G  R+AV
Sbjct: 58  TGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAV 117

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++Q LR  G  PDNFTYP +FK    LG    G +++G V+K G + D YV N+++ +
Sbjct: 118 LLFRQ-LREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDM 176

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVT 182
           +   G +     VF+E   R++VSWN LI+G+V+     +A+ +FR MQ +  + P+E T
Sbjct: 177 YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEAT 236

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           ++  +SAC  L+ L LG+EIH Y+ E  L  T+ + NAL+DMY KCG L  A EIF+ M 
Sbjct: 237 VVSTLSACIALKMLELGKEIHRYVREQ-LGFTIKIGNALVDMYCKCGHLSIAREIFNDMP 295

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            KTV+  T+M+ GY   G LD AR++F+  P + VV W A+I GYVQ  R  +A+ALF E
Sbjct: 296 IKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFRE 355

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQ   + PD  T V  L+ C+QLG L+ G WIH +I++    ++ V+GTAL++MYAKCG 
Sbjct: 356 MQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGF 415

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I K+L++F+ + E+++ ++T+II GLA++GK   A+  F+EM+  G+ PD+ITF+G+LSA
Sbjct: 416 IEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSA 475

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C HGGLV+EGRK+F  M++++++ PKL+HY C++DLLGR+G L+EAE+LI   P   + V
Sbjct: 476 CSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEV 535

Query: 483 V---WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           +   +GAL  ACR HGNV +GER A +L+ ++  DS ++ LLAN+Y  ++ WE+  KVR+
Sbjct: 536 IVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRR 595

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            M++ GV+K PGCSS+EVNG+++EF+V D SHPE+ +IY  L  + +
Sbjct: 596 KMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAK 642


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/576 (46%), Positives = 389/576 (67%), Gaps = 6/576 (1%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           ++L+AFCA S   NL Y  KI   VQ+P+ F +NV ++ + + G +R+ + L++Q LR  
Sbjct: 133 NKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQ-LRED 191

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PD FTYP + K    L     G ++ G ++K G D+D YV+N++I ++    ++  A
Sbjct: 192 GLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENA 251

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQ 192
             +FDE   R+ VSWN +I+G+VR     +AI  FR+MQ E  E PDE T++  +SAC  
Sbjct: 252 KKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTA 311

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L++L LG EIH Y+ +  L  T  + NAL+DMY KCG L  A  IFD M  K V+  T+M
Sbjct: 312 LKNLELGDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSM 370

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I GY   G L  AR +FD  P + VV W A+I GYVQ     +A+ALF EMQ   IKPD 
Sbjct: 371 ISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDK 430

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
            T V  L+ C+QLGAL+ G WIH ++++    ++VV+GTAL++MY+KCG + K+L++F+E
Sbjct: 431 FTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 490

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           + ++++ ++T+II GLA++GK  +A+  FSEM  VG  PD+ITF+G+LSAC HGGLV+EG
Sbjct: 491 LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEG 550

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA-ADVVV--WGALFF 489
           R++F  M  + R+ PK++HY C++DLLGR+GLL+EAE+LI+ +P+   ++VV  +GAL  
Sbjct: 551 RRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLS 610

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+H NV +GER A KL  ++  DS I+ LLAN+Y   + WE+A KVR+ M+E GV+K 
Sbjct: 611 ACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKM 670

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           PGCS IEV+G+++EF+V D SHPE+ +I   L ++T
Sbjct: 671 PGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVT 706


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/576 (46%), Positives = 389/576 (67%), Gaps = 6/576 (1%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           ++L+AFCA S   NL Y  KI   VQ+P+ F +NV ++ + + G +R+ + L++Q LR  
Sbjct: 179 NKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQ-LRED 237

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PD FTYP + K    L     G ++ G ++K G D+D YV+N++I ++    ++  A
Sbjct: 238 GLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENA 297

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQ 192
             +FDE   R+ VSWN +I+G+VR     +AI  FR+MQ E  E PDE T++  +SAC  
Sbjct: 298 KKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTA 357

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L++L LG EIH Y+ +  L  T  + NAL+DMY KCG L  A  IFD M  K V+  T+M
Sbjct: 358 LKNLELGDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSM 416

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I GY   G L  AR +FD  P + VV W A+I GYVQ     +A+ALF EMQ   +KPD 
Sbjct: 417 ISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDK 476

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
            T V  L+ C+QLGAL+ G WIH ++++    ++VV+GTAL++MY+KCG + K+L++F+E
Sbjct: 477 FTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 536

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           + ++++ ++T+II GLA++GK  +A+  FSEM  VG  PD+ITF+G+LSAC HGGLV+EG
Sbjct: 537 LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEG 596

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA-ADVVV--WGALFF 489
           R++F  M  + R+ PK++HY C++DLLGR+GLL+EAE+LI+ +P+   ++VV  +GAL  
Sbjct: 597 RRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLS 656

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+H NV +GER A KL  ++  DS I+ LLAN+Y   + WE+A KVR+ M+E GV+K 
Sbjct: 657 ACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKM 716

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           PGCS IEV+G+++EF+V D SHPE+ +I   L ++T
Sbjct: 717 PGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVT 752


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/582 (44%), Positives = 379/582 (65%), Gaps = 7/582 (1%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKN-LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           + GL    F+ SRLI+F ++  SK+ LD+   +   +  PN F WN  IRG+  +   RE
Sbjct: 34  VNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPRE 93

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A+ LY  M+  G   P+NFT+P L   CA L     G+E+  H++K GF+ D++V NA+I
Sbjct: 94  AIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALI 153

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           H++   G+L LA  +FDES VR+LVS+N++I G+     P  A+ LF +MQ   + PDE 
Sbjct: 154 HLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEF 213

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISES--GLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           T + + S C+ L + N+G++IH  + ++   +   + L +A++DMY KCG +  AE +F 
Sbjct: 214 TFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFS 273

Query: 240 SM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           +M  +K+  + ++M+ GYA+ G +++ARK+F+ + E+ V+ W A+I GY QA +  EAL 
Sbjct: 274 TMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALE 333

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMY 357
           LF EM+A GIKPD VT V  LSAC++LGA D G  + H++IE   FN N +L  A++DMY
Sbjct: 334 LFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMY 393

Query: 358 AKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           AKCG+I  AL++F  + +  +    + ++I GLA HG    AI+ F E+I  GL PDE+T
Sbjct: 394 AKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVT 453

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+L AC H GL++EG+K F  M + + + P+++HY CMVDLLGR G LEEA  L++ M
Sbjct: 454 FVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM 513

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P  A+ V+W AL  ACR HGNV IGE A  KLLE++ Q    YVLL+N+  D+N WEEA 
Sbjct: 514 PFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEAR 573

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +VRK+ME+ G+ K PG S IE+ G ++ F+  DKSHP+ ++I
Sbjct: 574 QVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEI 615


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/579 (44%), Positives = 364/579 (62%), Gaps = 2/579 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           MT+TG+I+H F  SR+IAFCA++ S +L Y   I   V+ PN+F WN  IRG+    K  
Sbjct: 180 MTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPI 239

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A   +  M +      D+ ++    K C      F G  ++  V K+GFD ++ V N +
Sbjct: 240 FAFSFFVYMFQ-LRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGL 298

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH +   G L  A  VFDES  +++V+W ++I+G+       EA+ +F  M L  VEP+E
Sbjct: 299 IHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNE 358

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT+I +VSAC+ + +L +G+ +H  + E  +  ++ L NAL+DMYVKC  L  A E+FD 
Sbjct: 359 VTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDR 418

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K V S T+M+ GYAK G L+ AR+ FD  P K  V W+A+I GY Q  + KE+L LF
Sbjct: 419 MATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLF 478

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR-FIEKENFNLNVVLGTALVDMYAK 359
           HEM   G+ P   T V  LSAC QL  L+ G WIH+ F+  +   L+V L  A+VDMYAK
Sbjct: 479 HEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAK 538

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I  A +VF  MPERN +++  +I G A +G+A  AI+ F +M  +G  P+ ITF+ +
Sbjct: 539 CGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSL 598

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC HGGL+ EGR+YF  M   + + P+  HY+CMVDLLGR+GLLEEA +LI +MPM  
Sbjct: 599 LTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQP 658

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
               WGAL  ACR+HGNV +   +A  LL LDP+DSGIYVLLAN   +   W +  +VR 
Sbjct: 659 CEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRS 718

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +M+++GV+K PG S IE++G   EF+V D+SHP+ E+IY
Sbjct: 719 LMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIY 757


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/588 (43%), Positives = 375/588 (63%), Gaps = 4/588 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T  +   +A S L    A S    LDY  K+   +  PN +SWN+ IR    +    
Sbjct: 162 MLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPI 221

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           ++V ++ +ML +    P+ FT+P+L K  A      +G  + G  +K  F  D++V N++
Sbjct: 222 QSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSL 281

Query: 121 IHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           IH + SCG L LA  VF+  E   +++VSWNS++ GFV+ G+P +A+ LF  M+ E V P
Sbjct: 282 IHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHP 341

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           + VTM+ ++SACA+  +L LGR++  YI  + + + + + NA +DM+VKCG++E A  +F
Sbjct: 342 NAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLF 401

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D+M  + VVS TT+I GYAK     IAR IFD +P K +  WN +I GY Q+ R KEALA
Sbjct: 402 DNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALA 461

Query: 299 LFHEMQAT--GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           +F E+Q T  G +PD VT +  LSAC+QLGA+D G WIH +I+KE   LN  L T+L+DM
Sbjct: 462 IFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDM 521

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y+K G++ KA++VFH +  ++   ++A+I GLA+HG+   AI  F +M    + P+ +TF
Sbjct: 522 YSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTF 581

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             +L AC H GLVDEG++ F +M  ++ + PK KHYSCMVD+LGR+G LEEA + I  MP
Sbjct: 582 TNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMP 641

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +A    VWGAL  AC +HGN+ + E+A  +LLE++P + G YVLL+N+Y  +  WE   +
Sbjct: 642 LAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSE 701

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +R+ M + G++K  GCSSIE++G ++EFIV D +HP    IY  L ++
Sbjct: 702 LRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEI 749


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/586 (41%), Positives = 369/586 (62%), Gaps = 1/586 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGL    F+ S+L    A+S    LDY   +   +  PN ++WN  IR +  +    
Sbjct: 48  MLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPF 107

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           ++  ++  +L      P+ FT+P + K  + L    +G  + G  +KL F +D+Y+ N++
Sbjct: 108 QSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSL 167

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           +  + +CGDL +A  +F     +++VSWNS+I+ F +   P +A+ LF  M+ E V P+ 
Sbjct: 168 VRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNS 227

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+G++SACA+  DL  GR +  YI   G+ + + L NA++DMY KCG ++ A+++FD 
Sbjct: 228 VTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDE 287

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V S T M+ GYAK G  D AR +F+ +P K +  WN +I  Y Q  + KEALA+F
Sbjct: 288 MPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF 347

Query: 301 HEMQATGI-KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           +E+Q + I KPD VT V  LSAC+QLGA+D G WIH +I++E   LN  L ++LVDMYAK
Sbjct: 348 NELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAK 407

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++ KAL+VF+ + ER+   ++A+I GL +HG+   AI  F EM    + P+ +TF  +
Sbjct: 408 CGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNV 467

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H GLVDEGR +F +M  ++ + P++KHY+CMVD+LGR+G LEEA +LI  M    
Sbjct: 468 LCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTP 527

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VWGAL  AC LH NV +GE A+ +LL+L+P++ G  VLL+N+Y  +  WE+  ++RK
Sbjct: 528 SASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRK 587

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           +M +  ++K PGCSSIE NG ++EF+V D +HP    IY  L ++ 
Sbjct: 588 LMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIA 633


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/588 (42%), Positives = 371/588 (63%), Gaps = 35/588 (5%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T L    F+ S+++AFCA+ +S +L Y   +   + NP +F+ N  IRG+      R
Sbjct: 63  MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 122

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ L+ Q++   G  PD FT+P LFK C   G+   G ++  H  KLGF  D Y+ N +
Sbjct: 123 QAI-LFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTL 178

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           ++++ +CG L  A  VFD+   +++VSW ++I  + +   P EAI+LFR M++  V+P+E
Sbjct: 179 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNE 238

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T++ +++ACA+  DL   +++H YI E+G+     L +ALMD+Y KCG           
Sbjct: 239 ITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCG----------- 287

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                  +AR +F+ +PEK +  WN +I G+V+    +EAL+LF
Sbjct: 288 --------------------CYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLF 327

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           +EMQ +G+K D VT    L AC+ LGAL+ G W+H +IEKE   ++V LGTALVDMYAKC
Sbjct: 328 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKC 387

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G+I  A++VF EMPE++ +T+TA+I GLA+ G+ L A+  F EM    + PD ITF+G+L
Sbjct: 388 GSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVL 447

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           +AC H GLV+EG  YF  M + + + P ++HY CMVD+LGR+G + EAE LI++MPMA D
Sbjct: 448 AACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPD 507

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             V   L  ACR+HGN+ + ERAA +L+ELDP++ G YVLL+N+Y     WE A K+R++
Sbjct: 508 YFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMREL 567

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           M ER ++K PGCS+IEV G+++EF+  D SHP+  +IY+ L  + R  
Sbjct: 568 MVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRL 615


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/575 (41%), Positives = 371/575 (64%), Gaps = 3/575 (0%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S      R+IAFC   ES  + Y  ++   +  P  F WN  I+G+      +  V 
Sbjct: 34  GLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVS 93

Query: 65  LYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           +Y  ML +   +PD FT+P L K    ++ L++ G  +  H +K GFD +++V  A IH+
Sbjct: 94  MYLLMLASN-IKPDRFTFPFLLKGFTRNMALQY-GKVLLNHAVKHGFDSNLFVQKAFIHM 151

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           F  C  + LA  VFD      +V+WN +++G+ R    +++  LF +M+   V P+ VT+
Sbjct: 152 FSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTL 211

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + M+SAC++L+DL  G+ I+ YI+   +   + L N L+DM+  CG+++ A+ +FD+M N
Sbjct: 212 VLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKN 271

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + V+S T+++ G+A  G +D+ARK FD +PE+  V W A+I GY++  R  EALALF EM
Sbjct: 272 RDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREM 331

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           Q + +KPD  T V  L+AC+ LGAL+ G W+  +I+K +   +  +G AL+DMY KCGN+
Sbjct: 332 QMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNV 391

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA +VF EM  ++  T+TA+I GLA++G   +A++ FS MI   + PDEIT++G+L AC
Sbjct: 392 GKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCAC 451

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H G+V++G+ +F  M+    + P + HY CMVDLLGR+G LEEA ++I +MP+  + +V
Sbjct: 452 THAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIV 511

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WG+L  ACR+H NV + E AA ++LEL+P++  +YVLL N+Y     WE   +VRK+M E
Sbjct: 512 WGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMME 571

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           RG++KTPGCS +E+NG +YEF+  D+SHP+ ++IY
Sbjct: 572 RGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 606


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/588 (44%), Positives = 374/588 (63%), Gaps = 1/588 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL +      +LI+FCA+ ++ +L Y  ++   +  PN F +N  IRG+  +    
Sbjct: 11  IILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPI 70

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +AV L+++M+ +G   P+ FT P + K C      +    + G  +KLG    ++V NA+
Sbjct: 71  DAVLLFRRMICSG-LSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL 129

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I V+V CG +  A  +FD+   + LVSWNS+I G+   G  +EA  LFR M+   +EPD 
Sbjct: 130 IAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDG 189

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T + ++S C+Q  DL+LGR +H+ I  +G+ + + + NAL+DMY KCG L SA+ IFD 
Sbjct: 190 FTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDR 249

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
              K VVS T+MI  YA+ G +++AR+IFD +P K VV WN++I  Y++  + +EAL LF
Sbjct: 250 TQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLF 309

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           ++M+ + + PD  T V  L+ACSQLG L  G  IH +I        V L  +L+DMYAKC
Sbjct: 310 NKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKC 369

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G +  AL +F EMP +N +++  IIG LALHG  L+AI  F EM   G +PDEIT  G+L
Sbjct: 370 GPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLL 429

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC H GLVD G  YF +M  I+R+  +++HY+CMVDLLGR GLL EA +LI  MPM  D
Sbjct: 430 SACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPD 489

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           VVVWGAL  ACR+HGNV IG++   +LLEL+P   G+YVL++N+Y ++  WE+  K+RK+
Sbjct: 490 VVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKL 549

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           M +RG++K    SSIE++G +YEF+V DK H     IY  L QLT H 
Sbjct: 550 MIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHL 597


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/583 (40%), Positives = 375/583 (64%), Gaps = 3/583 (0%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL ++    +R++ FC   E  +  Y  ++   +  PN F WN  IRG+      +  V 
Sbjct: 45  GLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVS 104

Query: 65  LYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           LY +MLR G  +PD +T+P LFK     + L + G ++ GHVLK G   +++VH A++ +
Sbjct: 105 LYLEMLRRG-VKPDRYTFPFLFKGFTRDIALEY-GRQLHGHVLKHGLQYNVFVHTALVQM 162

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           ++ CG L  A  VFD     ++++WN +I+ + + G   E+ RLF  M+ ++V P  VT+
Sbjct: 163 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL 222

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + ++SAC++L+DL  G+++H Y+    +   + L NA++DMY  CG+++SA  IF SM N
Sbjct: 223 VLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNN 282

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + ++S TT++ G+   G +D+AR  FD +PEK  V W A+I GY+++ R KEAL LF  M
Sbjct: 283 RDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNM 342

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           QAT +KPD  T V  L+AC+ LGAL+ G WI  +I++     ++ +  AL+DMY KCG++
Sbjct: 343 QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDV 402

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA  +F EM +R+  T+TA+I GLA++G    A+  FS M+   ++PDEIT++G+LSAC
Sbjct: 403 DKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 462

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLVD+GRKYF +M+S   + P + HY C+VDLL R+G L+EA ++I +MP+ A+ +V
Sbjct: 463 THTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIV 522

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL   CR++    + E    ++LEL+P +  +YVLL N+Y     W +  ++R+MM +
Sbjct: 523 WGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMD 582

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +G++KTPGCS IE+NG ++EF+  D+SHP+ + I   L ++T+
Sbjct: 583 KGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQ 625


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/580 (41%), Positives = 370/580 (63%), Gaps = 2/580 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TG+ S  ++ S+L A  A+S   +L+Y  K+   +  PNSF+WN  IR +       
Sbjct: 54  MIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPV 113

Query: 61  EAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            ++  +  M+ +     P+ +T+P L K  A +    LG  + G  +K     D++V N+
Sbjct: 114 CSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANS 173

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +IH + SCGDL  AC VF     +++VSWNS+INGFV+ G P +A+ LF+ M+ E V+  
Sbjct: 174 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKAS 233

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            VTM+G++SACA++ DL  GR +  YI E+ + + + LANA++DMY KCG +E A+ +FD
Sbjct: 234 HVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFD 293

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           +M  K  V+ TTM+ GYA     + AR++ + +P+K +V WNA+I  Y Q  +  EAL +
Sbjct: 294 AMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLV 353

Query: 300 FHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           FHE+Q    IK + +T V  LSAC+Q+GAL+ G WIH +I+K    +N  + +AL+ MY+
Sbjct: 354 FHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYS 413

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG++ KA +VF+ + +R+   ++A+IGGLA+HG   +A+  F +M    + P+ +TF  
Sbjct: 414 KCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTN 473

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +  AC H GLVDE    F +M S + + P+ KHY+C+VD+LGRSG LE+A + I +MP+ 
Sbjct: 474 VFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIP 533

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
               VWGAL  AC++H N+S+ E A  +LLEL+P++ G +VLL+N+Y  S  W+   ++R
Sbjct: 534 PSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELR 593

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           K M   G++K PGCSSIE++G+++EF+  D +HP  E++Y
Sbjct: 594 KHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 633


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/580 (44%), Positives = 369/580 (63%), Gaps = 3/580 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +T TGL++  F  SRL+AFCA+S+S ++ Y   I    + PN F WN  I+G+ +     
Sbjct: 75  ITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPS 134

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
                ++QM+RN     D+ ++    K C     + +G  +   + K GFD D++V N +
Sbjct: 135 MGFSFFRQMIRNRAEF-DSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGL 193

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I  +V  G LG A  +FDES V+++V+W ++ING+ R+ +  EAI LF  M    V+P+E
Sbjct: 194 IQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNE 253

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMI ++SAC+Q  D  +G+ +H +I    +T ++ L NA++DMYVKCG L +A EIF++
Sbjct: 254 VTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNN 313

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V S T+++ GYAK G L  ARK+FD++PE+ +V WNA+I GY Q  +  EAL LF
Sbjct: 314 MERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELF 373

Query: 301 HEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYA 358
           H M    G+ P   T V  LSA  QLG L+ G  IH   + K    ++++L  A++DMYA
Sbjct: 374 HNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYA 433

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG+I  A ++FH MPE+N +++ ++I   A +G A  A++ F +MIG GL PD ITF+G
Sbjct: 434 KCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIG 493

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC +GG V EG+ +F  M + F + PK +HY+CMVDLL R GLL+EA +LI  MPM 
Sbjct: 494 VLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPME 553

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
           A    WGAL  ACR HGNV + + A  KLLELDP+DSGIY LLAN+  D   W++   VR
Sbjct: 554 ASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVR 613

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +MM ERGV+K PG S IE+ G  +EF+V D SH    +IY
Sbjct: 614 RMMRERGVKKVPGHSLIEIEGKFHEFLVADTSHTRSSEIY 653


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/583 (40%), Positives = 374/583 (64%), Gaps = 3/583 (0%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL ++    +R++ FC   E  +  Y  ++   +  PN F WN  IRG+      +  V 
Sbjct: 66  GLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVS 125

Query: 65  LYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           LY +MLR G  +PD +T+P LFK     + L + G ++ GHVLK G   +++VH A++ +
Sbjct: 126 LYLEMLRRG-VKPDRYTFPFLFKGFTRDIALEY-GRQLHGHVLKHGLQYNVFVHTALVQM 183

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           ++ CG L  A  VFD     ++++WN +I+ + + G   E+ RLF  M+ ++V P  VT+
Sbjct: 184 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL 243

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + ++SAC++L+DL  G+++H Y+    +   + L NA++DMY  CG+++SA  IF SM N
Sbjct: 244 VLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNN 303

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + ++S TT++ G+   G +D+AR  FD +PEK  V W A+I GY+++ R KEAL LF  M
Sbjct: 304 RDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNM 363

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           QAT +KPD  T V  L+AC+ LGAL+ G WI  +I++     ++ +  AL+DMY KCG++
Sbjct: 364 QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDV 423

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA  +F EM +R+  T+TA+I GLA++G    A+  FS M+   ++PDEIT++G+LSAC
Sbjct: 424 DKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 483

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLVD+GRKYF +M+S   + P + HY C+VDLL R+G L+EA ++I +MP+ A+ +V
Sbjct: 484 THTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIV 543

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL   CR++    + E    ++LEL+P +  +YVLL N+Y     W +  ++R+MM +
Sbjct: 544 WGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMD 603

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +G++K PGCS IE+NG ++EF+  D+SHP+ + I   L ++T+
Sbjct: 604 KGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQ 646


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 368/579 (63%), Gaps = 1/579 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TG  S  ++ S+L A  A+S   +L+Y  K+   +  PNSF+WN  IR +       
Sbjct: 53  MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            ++  +  M+      P+ +T+P L K  A +    LG  + G  +K     D++V N++
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH + SCGDL  AC VF     +++VSWNS+INGFV+ G P +A+ LF+ M+ E V+   
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASH 232

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+G++SACA++ +L  GR++  YI E+ + + + LANA++DMY KCG +E A+ +FD+
Sbjct: 233 VTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 292

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K  V+ TTM+ GYA     + AR++ + +P+K +V WNA+I  Y Q  +  EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352

Query: 301 HEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           HE+Q    +K + +T V  LSAC+Q+GAL+ G WIH +I+K    +N  + +AL+ MY+K
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++ K+ +VF+ + +R+   ++A+IGGLA+HG   +A+  F +M    + P+ +TF  +
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
             AC H GLVDE    F QM S + + P+ KHY+C+VD+LGRSG LE+A + I +MP+  
Sbjct: 473 FCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPP 532

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VWGAL  AC++H N+++ E A  +LLEL+P++ G +VLL+N+Y     WE   ++RK
Sbjct: 533 STSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRK 592

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            M   G++K PGCSSIE++G+++EF+  D +HP  E++Y
Sbjct: 593 HMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 631


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/650 (40%), Positives = 377/650 (58%), Gaps = 63/650 (9%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG IS  FA SRL+ F   S    LDY  +I   ++N N F WN  +R ++++    
Sbjct: 64  MILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAE 123

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ LYK M++N    PDN+TYPL+ + CA   L F G EI  HVLK+GFD D+YV N +
Sbjct: 124 KALLLYKLMVKNN-VGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTL 182

Query: 121 IHV-------------------------------FVSCGDLGLACNVFDESCVRN----- 144
           I++                               +V  GD+  A  +FD+   RN     
Sbjct: 183 INMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN 242

Query: 145 --------------------------LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
                                     +VSW++LI+G+ ++G   EA+ +F +M    +  
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           DEV ++ ++SACA L  +  G+ IH  +   G+   V L NAL+ MY   G++  A+++F
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF 362

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           +   N   +S  +MI G  K G ++ AR +FD +PEK +V W+A+I GY Q     E LA
Sbjct: 363 NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLA 422

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LFHEMQ   I+PD    V  +SAC+ L ALD G W+H +I K    +NV+LGT L+DMY 
Sbjct: 423 LFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYM 482

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +  AL+VF+ M E+   ++ A+I GLA++G    ++  FSEM   G++P+EITF+G
Sbjct: 483 KCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMG 542

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC H GLVDEGR +FA M     + P +KHY CMVDLLGR+GLL EAE+LI SMPMA
Sbjct: 543 VLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMA 602

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            DV  WGAL  AC+ HG+  +GER   KL+EL P   G +VLL+N++     WE+  +VR
Sbjct: 603 PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVR 662

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            MM+++GV KTPGCS IE NG+++EF+  DK+HP + ++   L ++ +  
Sbjct: 663 GMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRL 712


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/579 (41%), Positives = 365/579 (63%), Gaps = 1/579 (0%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +  S+L+   AIS    L Y   +   +  PN + WN  IRG+  +    ++  ++  ML
Sbjct: 105 YTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHML 164

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
            +    P+ FT+P LFK  + L +  LG  + G V+K     D+++ N++I+ + S G  
Sbjct: 165 HSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAP 224

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            LA  VF     +++VSWN++IN F   G P +A+ LF++M+++ V+P+ +TM+ ++SAC
Sbjct: 225 DLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSAC 284

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A+  DL  GR I  YI  +G T  + L NA++DMYVKCG +  A+++F+ M  K +VS T
Sbjct: 285 AKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWT 344

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIK 309
           TM+ G+AK G  D A  IFD +P K+   WNA+I  Y Q  + + AL+LFHEMQ +   K
Sbjct: 345 TMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAK 404

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD VT +  L A +QLGA+D G WIH +I+K + NLN  L T+L+DMYAKCGN+ KA++V
Sbjct: 405 PDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEV 464

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           FH +  ++   ++A+IG LA++G+   A+  FS M+   + P+ +TF  IL AC H GLV
Sbjct: 465 FHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLV 524

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           +EG + F QM  ++ + P+++HY C+VD+ GR+GLLE+A   I  MP+     VWGAL  
Sbjct: 525 NEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLG 584

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           AC  HGNV + E A   LLEL+P + G +VLL+N+Y  +  WE+   +RK+M +  V+K 
Sbjct: 585 ACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKE 644

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           P CSSI+VNG+++EF+V D SHP  ++IY  L +++  F
Sbjct: 645 PWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKF 683


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/569 (43%), Positives = 374/569 (65%), Gaps = 6/569 (1%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           ++L+AFC    + NL+Y  K+   ++ P    +N+ I+ F + G  +  + L+ + LR  
Sbjct: 73  NKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSK-LRED 131

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PDNFTYP +FK    LG      ++ G V K G + D YV N++I ++       + 
Sbjct: 132 GLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVM 191

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQ 192
             +FDE   R+++SWN +I+G+V+     +AI +F  MQ E  + PDE T++  +SAC  
Sbjct: 192 KMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTA 251

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L+ L LG++IH Y+ ++ +  T  + NAL+DMY KCG L  A  +F+ M +K V+  TTM
Sbjct: 252 LKRLELGKKIHHYVRDN-VKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTM 310

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GYA  G L+ AR++F+  P + VV W A+I GYVQ  R  EA+ALF EMQ   +KPD 
Sbjct: 311 VSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDK 370

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
              V  L+ C+Q GA++ G WIH FI++    ++ V+GTAL++MYAKCG I KAL++F+ 
Sbjct: 371 FIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYG 430

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           +  +++ ++T+II GLA++GK   A+  FS+M   G+ PD+ITF+G+LSAC HGGLV+EG
Sbjct: 431 LRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEG 490

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---MAADVVVWGALFF 489
           RK+F  M   +++ PK++HY C+VDLLGR+GLL EAE+LI+ +P    A  V ++G+L  
Sbjct: 491 RKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLS 550

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR++GNV +GER A +L++ +  DS ++ LLAN+Y  ++ WE+  KVR+ M++ GV+KT
Sbjct: 551 ACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKT 610

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           PGCSSIEV+ +++EF     SHPE+ +IY
Sbjct: 611 PGCSSIEVDSIIHEFFSGHPSHPEMREIY 639


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/582 (43%), Positives = 362/582 (62%), Gaps = 36/582 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGL    F  S+++AFC++ ES +L Y   +   + NP S++ N  IRG  +    +
Sbjct: 11  MLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQ 70

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+  Y++M+  G   PD +T+P LFK C +      G +I  H  KLGF  D Y  N +
Sbjct: 71  EALLFYQEMMVQGLI-PDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQNTL 126

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEPD 179
           ++++ +CG L  A  VFD+   + +VSW ++I    +   P EA+RLF R M+ E V+P+
Sbjct: 127 MNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPN 186

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           EVT++ +++ACA+  DL + + IH YI E G    V L   LMD+Y KCG ++       
Sbjct: 187 EVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQ------- 239

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                   +AR +FD   EK +  WN +I G+V+    +EAL L
Sbjct: 240 ------------------------LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLL 275

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F EMQ  GIK D VT    L AC+ LGAL+ G W+H +I+K+  +++V LGTALVDMYAK
Sbjct: 276 FREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAK 335

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I  A+QVFHEMPE++ +T+TA+I GLA+ G+A +A+ YF EM   G+ PD ITF+G+
Sbjct: 336 CGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGV 395

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H G VDEG  +F  MS  + + P ++HY  +VD+LGR+G + EAE+LI+SMPMA 
Sbjct: 396 LAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAP 455

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D  V G L  ACR+HGN+   ERAA +LLE+DP  SG YVLL+N+Y+ S  WEEA + R+
Sbjct: 456 DQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRE 515

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +M ERG+ K PGCS IEV+G+++EF+  D SH +  +I + L
Sbjct: 516 LMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEML 557


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/577 (42%), Positives = 363/577 (62%), Gaps = 34/577 (5%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR-EAVDLYKQMLRN 72
           +RL A CA S   +  Y   +L  ++ PN   +N  IRG   +     E + +YKQML +
Sbjct: 60  TRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQML-S 118

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
            G  PDN+T P + K CA       G E+ G  +K+G   D+YV N ++ ++  C  +  
Sbjct: 119 KGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRS 178

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD S  R+LVSW ++I G+V+ GF RE + LF +M  E ++ D +T++ ++S+CA+
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238

Query: 193 LEDLNLGREIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
           L DL LGR++H YI   S + L V + NAL+DMY+KCG                      
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA-------------------- 278

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
                      + ARK+F ++P K VV WN++I G  Q  + KE+L +F +MQ  G+KPD
Sbjct: 279 -----------NFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPD 327

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            VT V  L++C+ LG L+ G W+H ++++     +  +G ALVDMYAKCG+I +A  VF 
Sbjct: 328 DVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQ 387

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            M  ++  +YTA+I GLA+HG+   A+  FSEM  +G+ PDE+TF+G+L+AC H GLV+E
Sbjct: 388 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 447

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           GRKYF  MS+I+ L P+L+HY CMVDLLGR+GL+ EAE+ IR+MP+  D  V GAL  AC
Sbjct: 448 GRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGAC 507

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           ++HG V +GE    K+ +++P+  G YVL++N+Y  +N W +A K+RK M+ER +EKTPG
Sbjct: 508 KIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPG 567

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           CSSIE++G+++EF   DKSHP++++IY  L ++  H 
Sbjct: 568 CSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHL 604


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/573 (40%), Positives = 355/573 (61%), Gaps = 32/573 (5%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           L+   AI    ++DY   I   +  P+S ++N+ IRGF       EA+ L+K+M  N   
Sbjct: 62  LLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENS-V 120

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           +PD FT+P + KVC+ L     G +I   ++K GF    +V N +IH++ +CG++ +A  
Sbjct: 121 QPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARR 180

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           VFDE   RN+ +WNS+  G+ +SG   E ++LF +M    +  DEVT++ +++AC +L D
Sbjct: 181 VFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLAD 240

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L LG  I+ Y+ E GL     L  +L+DMY KCG+                         
Sbjct: 241 LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQ------------------------- 275

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                 +D AR++FD +  + VV W+A+I GY QA R +EAL LFHEMQ   I P+ +T 
Sbjct: 276 ------VDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           V  LS+C+ LGAL+ G W+H FI+K+   L V LGTAL+D YAKCG++  +++VF +MP 
Sbjct: 330 VSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPV 389

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           +N L++T +I GLA +G+   A+ YF  M+   + P+++TF+G+LSAC H GLVDEGR  
Sbjct: 390 KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDL 449

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  MS  F + P+++HY CMVD+LGR+GL+EEA Q I++MP+  + V+W  L  +C++H 
Sbjct: 450 FVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHK 509

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           NV IGE +  +L+ L+P  SG Y+LL+N+Y     WE+A KVR  M+E+G++KTPGCS I
Sbjct: 510 NVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLI 569

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           E++G+++EF   D  H + E+IY+ +  + +  
Sbjct: 570 ELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQI 602


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/584 (42%), Positives = 359/584 (61%), Gaps = 33/584 (5%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           T L+ +    S+LI+F A+S S +L+Y  K+   +QNP+ F  N  IRG+  +    EAV
Sbjct: 37  THLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAV 96

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            LY  M+  G    DN+TYP +   CA LG   LG      VLK GF  D++V NA+I  
Sbjct: 97  SLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQF 155

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVT 182
           + +CG  G AC+VFDES VR++V+WN +IN  +  G   +A  L  +M +L+ + PDEVT
Sbjct: 156 YHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVT 215

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           M+ +V ACAQL +L  G+ +H Y  E GL   + + NA++DMY KC  +ESA+E+F+   
Sbjct: 216 MVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNR-- 273

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                                        + EK V+ W +++ G  ++   +EALALF +
Sbjct: 274 -----------------------------IREKDVLSWTSMLSGLAKSGYFQEALALFQK 304

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQ   I+ D +T V  LSAC+Q GALD G +IH  I+K   N ++VL TALVDMYAKCG+
Sbjct: 305 MQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGS 364

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I  ALQVF  M  RN  T+ A+IGGLA+HG   DAIS F +M    LMPD++TF+ +L A
Sbjct: 365 IDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCA 424

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLVDEG   F  M + F++ P+++HY C+VDLL R+  +++A   I +MP+ A+ V
Sbjct: 425 CSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSV 484

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +W  L  ACR  G+  + E+   +++EL+P   G YV+L+N+Y   + W+ A K+RK M+
Sbjct: 485 LWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMK 544

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            +G+EKTPGCS IE+NG++++F+  D+SH + EQIY  + ++TR
Sbjct: 545 NKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 588


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/615 (41%), Positives = 366/615 (59%), Gaps = 64/615 (10%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL +  FA S+LI FCAIS   NL Y   +  +++ PN F WN  IRG   +     A+
Sbjct: 58  TGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAI 117

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           D Y +ML   G  P+++T+P L K CA +G    G +I GHVLKLG + D +VH ++I++
Sbjct: 118 DFYVRMLL-CGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINM 176

Query: 124 FVSCGDLGLACNVFDESC-------------------------------VRNLVSWNSLI 152
           +   G+LG A  VF +S                                VR+ VSWN++I
Sbjct: 177 YAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMI 236

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ +SG   EA+  F++M+   V P+E TM+ ++SACAQ   L LG  +  +I + GL 
Sbjct: 237 AGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLG 296

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L NAL+DMY KCG L                               D AR +F+ +
Sbjct: 297 SNLRLVNALIDMYSKCGDL-------------------------------DKARDLFEGI 325

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            EK ++ WN +IGGY      KEALALF +MQ + ++P+ VT V  L AC+ LGALD G 
Sbjct: 326 CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGK 385

Query: 333 WIHRFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
           WIH +I+K+   L N  L T+L+DMYAKCGNI  A QVF  M  ++  ++ A+I GLA+H
Sbjct: 386 WIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMH 445

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G A  A+  F +M   G  PD+ITF+G+LSAC H GLV+ GR+ F+ M   + +SPKL+H
Sbjct: 446 GHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQH 505

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y CM+DLLGR+GL +EAE L+++M M  D  +WG+L  ACR+HGNV +GE AA  L EL+
Sbjct: 506 YGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELE 565

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P++ G YVLL+N+Y  +  W++  ++R  + ++G++K PGCSSIEV+ +++EF+V DK H
Sbjct: 566 PENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVH 625

Query: 572 PELEQIYDCLVQLTR 586
            + + IY  L ++ +
Sbjct: 626 EQSQDIYKMLDEIDQ 640


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/646 (39%), Positives = 364/646 (56%), Gaps = 63/646 (9%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG I   +A SRLI F       ++DY  +I   ++N N F WN+ IR +++T    
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A  LYK ML N     DN+TYPLL + C+     +   ++  HVLKLGFD D+YV N +
Sbjct: 61  FAFTLYKSMLSNY-LGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 119

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR----------------------- 157
           I+ F  C ++  AC VF+ES V + VSWNS++ G++                        
Sbjct: 120 INCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN 179

Query: 158 --------SGFPREAIRLFRDM----------------QLERVEPDEVTMIGM------- 186
                    G   EA +LF +M                Q E  E    T +GM       
Sbjct: 180 SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV 239

Query: 187 --------VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
                   +SACA L  +N+G+ IH    + G    + L NAL+ MY KCG +  A ++F
Sbjct: 240 DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 299

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D      ++S  +MI GY K   +D A+ IFD +PEK VV W+++I GY Q     E LA
Sbjct: 300 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 359

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF EMQ +G KPD  T V  +SAC++L AL+ G W+H +I++    +NV+LGT L+DMY 
Sbjct: 360 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 419

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +  AL+VF+ M E+   T+ A+I GLA++G    ++  FS M    + P+EITF+G
Sbjct: 420 KCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMG 479

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC H GLVDEG+ +F  M    ++ P +KHY CMVDLLGR+G L+EAE+L+  MPM 
Sbjct: 480 VLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMT 539

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            DV  WGAL  AC+ HG+  +G R   KL+EL P   G +VLL+N+Y     W++  ++R
Sbjct: 540 PDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIR 599

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            MM +  V K PGCS IE NG+++EF+  DK+HP+++ I D LV++
Sbjct: 600 GMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEM 645


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/586 (41%), Positives = 361/586 (61%), Gaps = 4/586 (0%)

Query: 6   LISHGFAPSRLIAFCAISES---KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I HG A   L     +S S   ++L Y  K+   +  PN F +N  I+G+  +    ++
Sbjct: 59  IILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKS 118

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + LY++M+ +G   P+ FT P + K CA+    +LG  +     KLG      V NA+++
Sbjct: 119 LLLYRRMVCDG-ILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILN 177

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++V+CG +  A  VFD+   R LVSWNS+ING+ + G   EA+ +FR+MQ   +EPD  T
Sbjct: 178 IYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFT 237

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           ++G++S   +  + +LGR +H ++  +G+ +   + NALMDMY KCG L+ A+ +FD M+
Sbjct: 238 LVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQML 297

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           +K VVS T MI  YA  G +D A + F+ +P K VV WN+II  +VQ     EA+ LF+ 
Sbjct: 298 DKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYR 357

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M  +G+  +  T V  LS+CS +G L  G   H +I   N  L+  L  A++DMYAKCG 
Sbjct: 358 MCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGA 417

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A+ VF  MPE+N++++  IIG LALHG   +AI  F +M   G+ PDEITF G+LSA
Sbjct: 418 LQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSA 477

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLVD G+ YF  M+  F +SP ++HY+CMVDLLGR GLL EA  LI+ MP+  DVV
Sbjct: 478 CSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVV 537

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           VW AL  ACR +GN++IG++   +LLEL   +SG+YVLL+NMY +S  W++   + K+++
Sbjct: 538 VWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILD 597

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           + G++K    S IE++G  Y+F+V DK H     IY  L QL  H 
Sbjct: 598 QNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHL 643



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 205/453 (45%), Gaps = 73/453 (16%)

Query: 77  PDNFTYPLLFKVCASLG-LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           P + T   L   C SL  L+ +  +I  H    G    +     ++   V   DL  A  
Sbjct: 34  PTHQTLHYLIDQCISLKQLKHVHAQIILH----GLATQVLTLGKLVSSSVQLRDLRYAHK 89

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +FD+    N   +N LI G+  S  P +++ L+R M  + + P++ T+  ++ ACA    
Sbjct: 90  LFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSC 149

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
             LG  +H    + G+     + NA++++YV CG + SA  +FD +  +T+VS  +MI G
Sbjct: 150 YWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMING 209

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+K G                               RS+EA+ +F EMQ  G++PD  T 
Sbjct: 210 YSKMG-------------------------------RSEEAVLMFREMQEVGLEPDVFTL 238

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           V  LS  ++ G  D G ++H  +      ++ ++  AL+DMYAKCGN+  A  VF +M +
Sbjct: 239 VGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLD 298

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIG----------------------------- 406
           ++ +++T +I   A HG    A+ +F++M G                             
Sbjct: 299 KDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRM 358

Query: 407 --VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MVDLLGRS 462
              G+M ++ T + ILS+C H G +  G++     S IF  +  L    C  ++D+  + 
Sbjct: 359 CDSGVMANDTTLVAILSSCSHMGDLALGKQ---AHSYIFDNNITLSATLCNAIIDMYAKC 415

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           G L+ A  +   MP   + V W  +  A  LHG
Sbjct: 416 GALQTAMDVFFGMP-EKNAVSWNVIIGALALHG 447


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/580 (41%), Positives = 368/580 (63%), Gaps = 7/580 (1%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL S+    +++I FC   ES ++ Y  K+   +  P+ F WN  I+G+         V
Sbjct: 61  TGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGV 120

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNAVI 121
            LYK ML +   +PD FT+P L K     + L++ G  +  H +  GF D +++V    I
Sbjct: 121 SLYKLMLVHN-IKPDGFTFPFLLKGFTKDMALKY-GKVLLNHAVIHGFLDSNLFVQKGFI 178

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ--LERVEPD 179
           H+F  CG +  A  +FD      +V+WN +++G+ R     E+ RLF +M+   E V P+
Sbjct: 179 HLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPN 238

Query: 180 EVTMIGMVSACAQLEDLNLGREIH-WYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
            VT++ M+SAC++L+DL  G+ I+  YI E  +   + L NAL+DM+  CG++++A  +F
Sbjct: 239 SVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVF 298

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M  + V+S T+++ G+A    +D+ARK FD +PE+  V W A+I GY++  R KE L 
Sbjct: 299 DEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLT 358

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF +MQ + +KPD  T V  L+AC+ LGAL+ G W   +I+K     +  +G AL+DMY 
Sbjct: 359 LFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYF 418

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCGN+ KA ++F+EM +++  T+TA+I GLA +G   +A++ FS M+   + PDEIT++G
Sbjct: 419 KCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIG 478

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           ++ AC H GLV +G+ +F+ M+    + P L HY CMVDLLGR+G L+EA ++I +MP+ 
Sbjct: 479 VMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVK 538

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            + +VWG+L  ACR+H NV + E AA ++LEL+P++  +YVLL N+Y     W+    VR
Sbjct: 539 PNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVR 598

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           KMM ERG++K PGCS +E+NG++YEF+  DKSHP+ ++IY
Sbjct: 599 KMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIY 638


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/550 (42%), Positives = 357/550 (64%), Gaps = 6/550 (1%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           ++L+AF   S   + +Y  +I   + +P+ F +N+ I+ F+++G  R A+ L++Q LR  
Sbjct: 44  NKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQ-LREH 102

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PDN+TYP + K    +G    G ++   V+K G + D YV N+ + ++   G +   
Sbjct: 103 GVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGF 162

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQ 192
             VF+E   R+ VSWN +I+G+VR     EA+ ++R M  E  E P+E T++  +SACA 
Sbjct: 163 TQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAV 222

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L +L LG+EIH YI+ S L LT  + NAL+DMY KCG +  A EIFD+M  K V   T+M
Sbjct: 223 LRNLELGKEIHDYIA-SELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSM 281

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GY   G LD AR +F+  P + +V W A+I GYVQ  R +E +ALF EMQ  G+KPD 
Sbjct: 282 VTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDK 341

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
              V  L+ C+Q GAL+ G WIH +I++    ++ V+GTAL++MYAKCG I K+ ++F+ 
Sbjct: 342 FIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNG 401

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           + E+++ ++T+II GLA++GK  +A+  F  M   GL PD+ITF+ +LSAC H GLV+EG
Sbjct: 402 LKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEG 461

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV---WGALFF 489
           RK F  MSS++ + P L+HY C +DLLGR+GLL+EAE+L++ +P   + ++   +GAL  
Sbjct: 462 RKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLS 521

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR +GN+ +GER A  L ++   DS ++ LLA++Y  ++ WE+  KVR  M++ G++K 
Sbjct: 522 ACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKV 581

Query: 550 PGCSSIEVNG 559
           PG S+IEV+G
Sbjct: 582 PGYSAIEVDG 591


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/588 (42%), Positives = 359/588 (61%), Gaps = 8/588 (1%)

Query: 6   LISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +I HG A       +L++ C   +  +L Y   +   +  PN F +N  IRG+  +    
Sbjct: 62  IILHGLAAQVVTLGKLLSLCV--QEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPM 119

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +++ L++QM+ + G  P+ FT+P + K CA+    +    +    +KLG      V NA+
Sbjct: 120 KSLLLFRQMV-SAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAI 178

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           +  +V+C  +  A  VFD+   R +VSWNS+I G+ + GF  EAI LF++M    VE D 
Sbjct: 179 LTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADV 238

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T++ ++SA ++  +L+LGR +H YI  +G+ +   + NAL+DMY KCG L+ A+ +FD 
Sbjct: 239 FTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQ 298

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M++K VVS T+M+  YA  G ++ A +IF+ +P K VV WN+II   VQ  +  EA+ LF
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELF 358

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           H M  +G+ PD  T V  LS CS  G L  G   H +I      ++V L  +L+DMYAKC
Sbjct: 359 HRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKC 418

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G +  A+ +F  MPE+N +++  IIG LALHG   +AI  F  M   GL PDEITF G+L
Sbjct: 419 GALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLL 478

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC H GLVD GR YF  M S FR+SP ++HY+CMVDLLGR G L EA  LI+ MP+  D
Sbjct: 479 SACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPD 538

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           VVVWGAL  ACR++GN+ I ++   +LLEL   +SG+YVLL+NMY +S  W++  K+RK+
Sbjct: 539 VVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKI 598

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           M++ G++K    S IE++G  Y+F+V DK H     IY  L QL  H 
Sbjct: 599 MDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMDHL 646



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 211/475 (44%), Gaps = 76/475 (16%)

Query: 77  PDNFTYPLLFKVCASLG-LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           P + T   L   C+S+  L+ +  +I  H    G    +     ++ + V  GDL  A  
Sbjct: 37  PTHQTLHHLLDQCSSMKRLKLVHAQIILH----GLAAQVVTLGKLLSLCVQEGDLRYAHL 92

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +FD+    N   +N LI G+  S  P +++ LFR M      P++ T   ++ ACA    
Sbjct: 93  LFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPF 152

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
                 +H    + G+     + NA++  YV C  + SA ++FD + ++T+VS  +MI G
Sbjct: 153 YWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAG 212

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+K GF D                               EA+ LF EM   G++ D  T 
Sbjct: 213 YSKMGFCD-------------------------------EAILLFQEMLQLGVEADVFTL 241

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN------------- 362
           V  LSA S+   LD G ++H +I      ++ ++  AL+DMYAKCG+             
Sbjct: 242 VSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLD 301

Query: 363 ------------------IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
                             +  A+Q+F+ MP +N +++ +II  L   G+  +A+  F  M
Sbjct: 302 KDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRM 361

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGRSG 463
              G+MPD+ T + ILS C + G +  G++    +  +I  +S  L   + ++D+  + G
Sbjct: 362 CISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTL--CNSLIDMYAKCG 419

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
            L+ A  +   MP   +VV W  +  A  LHG    GE A      +  Q SG+Y
Sbjct: 420 ALQTAIDIFFGMP-EKNVVSWNVIIGALALHG---FGEEAIEMFKSM--QASGLY 468



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           G +Q + +K    ++H++++    P   T  H L  CS +  L     +H  I       
Sbjct: 20  GSLQTQINK---TIWHQLKS----PTHQTLHHLLDQCSSMKRLK---LVHAQIILHGLAA 69

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
            VV    L+ +  + G++  A  +F ++P+ N   Y  +I G +     + ++  F +M+
Sbjct: 70  QVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMV 129

Query: 406 GVGLMPDEITFLGILSAC 423
             G MP++ TF  +L AC
Sbjct: 130 SAGPMPNQFTFPFVLKAC 147


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/550 (42%), Positives = 361/550 (65%), Gaps = 6/550 (1%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           ++L+AF   S   + +Y  +I  ++ +P+ F +N+ I+ F++ G +R A+ L++Q LR  
Sbjct: 44  NKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQ-LRER 102

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PDN+TYP + K    +G    G +I   V+K G + D YV N+++ ++   G +   
Sbjct: 103 GVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGF 162

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQ 192
             VF+E   R+ VSWN +I+G+VR     EA+ ++R MQ+E  E P+E T++  +SACA 
Sbjct: 163 TQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAV 222

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L +L LG+EIH YI+   L LT  + NAL+DMY KCG +  A EIFD+M+ K V   T+M
Sbjct: 223 LRNLELGKEIHDYIANE-LDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSM 281

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GY   G LD AR +F+  P + VV W A+I GYVQ    ++A+ALF EMQ  G++PD 
Sbjct: 282 VTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDK 341

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
              V  L+ C+QLGAL+ G WIH +I++    ++ V+ TAL++MYAKCG I K+L++F+ 
Sbjct: 342 FIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNG 401

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           + + ++ ++T+II GLA++GK  +A+  F  M   GL PD+ITF+ +LSAC H GLV+EG
Sbjct: 402 LKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEG 461

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV---WGALFF 489
           RK F  MSSI+ + P L+HY C +DLLGR+GLL+EAE+L++ +P   + ++   +GAL  
Sbjct: 462 RKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLS 521

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR +GN+ +GER A  L ++   DS ++ LLA++Y  ++ WE+  KVR  M++ G++K 
Sbjct: 522 ACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKV 581

Query: 550 PGCSSIEVNG 559
           PG S+IEV+G
Sbjct: 582 PGYSAIEVDG 591


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/590 (41%), Positives = 366/590 (62%), Gaps = 7/590 (1%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMR 60
           T++GL +H F  SRL+AFCA+S+   L +   +L    + PN++     +RGFL  GK  
Sbjct: 55  TVSGLAAHRFPASRLLAFCALSDPPRLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPA 114

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNA 119
            A+ L++++LR+   R       ++F V A+         I     K GF    + V NA
Sbjct: 115 HALALFRRVLRD---RLPADARTIVFAVKAATTSSSPAEAIHCVAFKRGFIGQSVLVGNA 171

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-P 178
           ++H++ S   L  A  +FDE   R++VSW +L++G+ R G P EA R+F  M +     P
Sbjct: 172 LVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWP 231

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +EVT++   SA  Q+  L LGR +H  + ESG+ ++V L NAL+DM+ KCG + SA+EIF
Sbjct: 232 NEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIF 291

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M  K V S T+M+  YAK G L+ A K+F ++P +  V W+ ++  Y QA   +EA+ 
Sbjct: 292 DGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMR 351

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMY 357
           +F++M A G++P   T V  LSAC+QLG LD G  ++  +I      L V L  A +DM+
Sbjct: 352 IFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMF 411

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG++  A ++F  M ++N +++  +I   ALHG++ +A+  F +   +G+ PDEIT++
Sbjct: 412 AKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYI 471

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+LSAC H GLV EGR +F +M  ++ + P+ +HY+CM+DLLG+ GLLEEA ++ RSMP+
Sbjct: 472 GVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPV 531

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
            AD   WGAL  ACR+HGNV IG+ AA KL+ LDP DSGIYVL++ +Y   + W +   +
Sbjct: 532 GADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMI 591

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           R +M +RGV+K PGCSSIEV+G  +EF+  D SH   E IY  L  +  H
Sbjct: 592 RTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAALENIYLH 641


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/598 (42%), Positives = 368/598 (61%), Gaps = 11/598 (1%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKM 59
           +T+TGL +H F  SRL+AFCA+S    L +   IL      PN++     +RGFL     
Sbjct: 58  LTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLP 117

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL------GLRFLGYEIFGHVLKLGF-DV 112
             A+ L+++++R+     D  T+    K  A+       G    G  I    LK GF   
Sbjct: 118 ARALGLFRRVVRDR-LPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGE 176

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDM 171
            + V NA++H + +   L  A  VFDE   R++VSW +L++G+ R+G   EA RLF R +
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
            +  + P+ VT++  VSA  Q+  L  G  +H Y++E G+  +V L NAL+DM+ KCG +
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
             A E+FD M  K V S T+M+  YAK G L+ A ++F D+P + VV W+ +I  Y Q  
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR-FIEKENFNLNVVLG 350
           + +EA+ LF EM A G+ P   T V  LSAC+QLG LD G WI+  +I      L V LG
Sbjct: 357 QPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLG 416

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            AL+DM+AKCG++ +A ++F EM ERN +++  +I   A+HG++ +AI  F ++ G  ++
Sbjct: 417 NALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV 476

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           PD+ITFLG+L++C H GLV EGR+YF +M   +R+ P+++HY+CM+DLLG+ GLLEEA +
Sbjct: 477 PDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFE 536

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           + R MPM AD   WGAL  ACR+HGNV IG   A KL+ELDP DSGIYVL++ +Y   N 
Sbjct: 537 VARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNK 596

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           W++   +R  M +RGV+K PGCSSIEV G  ++F+V D SH   E+IY  L  +  H 
Sbjct: 597 WDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHL 654


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/569 (39%), Positives = 364/569 (63%), Gaps = 3/569 (0%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           +I+ CA+S S  LDY   +   +  P +   N  +R    + +  + + +Y++M R  G 
Sbjct: 62  VISSCALSSS--LDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERM-RTQGL 118

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
             D F++P L K  + +     G EI G   KLGFD D +V   ++ ++ +CG +  A  
Sbjct: 119 AVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARL 178

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +FD+   R++V+W+ +I+G+ +SG   +A+ LF +M+   VEPDE+ +  ++SAC +  +
Sbjct: 179 MFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGN 238

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L+ G+ IH +I E+ + +   L +AL+ MY  CG ++ A  +F+ M  K +V+ T M+ G
Sbjct: 239 LSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTG 298

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+K G ++ AR +F+ + +K +V W+A+I GY ++   +EAL LF+EMQ+ GIKPD VT 
Sbjct: 299 YSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTM 358

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  ++AC+ LGALD   WIH F++K  F   + +  AL++MYAKCG++ +A ++F +MP 
Sbjct: 359 LSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           +N +++T +I   A+HG A  A+ +F +M    + P+ ITF+G+L AC H GLV+EGRK 
Sbjct: 419 KNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKI 478

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M +   ++PK  HY CMVDL GR+ LL EA +L+ +MP+A +V++WG+L  ACR+HG
Sbjct: 479 FYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG 538

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
            + +GE AA +LLELDP   G +V L+N+Y  +  WE+ G+VRK+M+ +G+ K  GCS  
Sbjct: 539 EIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRF 598

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E+N  ++EF+V D+SH   ++IY+ L ++
Sbjct: 599 ELNNEIHEFLVADRSHKHADEIYEKLYEV 627


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 357/556 (64%), Gaps = 2/556 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++GL +  +A S++I   A+ +S +L +  K+   +++P +F WN  +RG  ++   +
Sbjct: 334 LVVSGLHNCQYAMSKVIRSYALQQS-DLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPK 392

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+  YK+  +  G +PDN T+P + K CA       G ++  HV+KLGF +D++V N++
Sbjct: 393 DAIVFYKKA-QEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSL 451

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH++ +CGDL  A ++FDE  V+++VSWNSLI G+ +    +E + LF  MQ E V+ D+
Sbjct: 452 IHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADK 511

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+ ++SAC  L D ++   +  YI  + + + V L N L+D Y + G+L+SAE++F  
Sbjct: 512 VTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQ 571

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M +K  V+   MI  YAK G L  A+KIFD +P K ++ W+++I  Y QA    ++L LF
Sbjct: 572 MKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 631

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            +MQ   +KPDAV     LSAC+ LGALD G WIH ++ + N   + ++  +L+DM+AKC
Sbjct: 632 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKC 691

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G + +ALQVF EM E+++L++ +II GLA +G   +A++ F  M+  G  P+E+TFLG+L
Sbjct: 692 GCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVL 751

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
            AC +  LV EG  +F +M ++  L P++KHY C+V +L R+G LE+A+  I  MP+A D
Sbjct: 752 IACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPD 811

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            VVW  L  AC+ HGNV++ E A  KL ELDP +SG Y+LL+N+Y  ++ W +A  VR+ 
Sbjct: 812 PVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQW 871

Query: 541 MEERGVEKTPGCSSIE 556
           M +  V K+P CS ++
Sbjct: 872 MADTAVRKSPACSVVD 887



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 214/348 (61%), Gaps = 2/348 (0%)

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K VVS   +I G+A +G ++ AR +FD +P + VV W  +I GY +A    EA+ALF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
             M A GI P  +T +  + A S LG +  G  +H +  K+    +  +G +L+D+YAK 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 361 GNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           G++  +L+VF EM +R +L ++T+II G A+HG +++A+  F+EM   G+ P+ ITFL +
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           ++AC HGGLV++G  +F  M   + + P++KH+ C++D+LGR+G L EAEQ+I  +P+  
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           +V+VW  L   C  +G V +G+RA   + +L+ +  G + +L+N+  +   + +A + RK
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARK 300

Query: 540 MMEERGVEKTPGCSSIEVNG-LLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +++ER + K PG + +     ++ E + +  +H  +  +++C   +++
Sbjct: 301 LLDERKIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSK 348



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 143/279 (51%), Gaps = 34/279 (12%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N VI  F   G++  A  +FD+   RN+VSW  LI+G+ R+    EA+ LFR M    + 
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGIS 69

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P E+T++ +V A + L  + +G  +H Y  + G+     + N+L+D+Y K G ++++ ++
Sbjct: 70  PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 129

Query: 238 FDSMVN-KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           FD M++ + +VS T++I G+A  G                                S EA
Sbjct: 130 FDEMLDRRNLVSWTSIISGFAMHGL-------------------------------SVEA 158

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVD 355
           L LF EM+  GI+P+ +T +  ++ACS  G ++ G+ +    + + N +  +     ++D
Sbjct: 159 LELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIID 218

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
           M  + G + +A Q+   +P E N + +  ++G  + +G+
Sbjct: 219 MLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGE 257



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 109/477 (22%), Positives = 209/477 (43%), Gaps = 38/477 (7%)

Query: 32  TKILFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
            ++LF+ Q P  N  SW   I G+       EAV L++ M+  GG  P   T   +    
Sbjct: 25  ARLLFD-QMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMA-GGISPSEITVLAVVPAI 82

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VRNLVSW 148
           ++LG   +G  + G+ +K G   D  V N++I ++   G +  +  VFDE    RNLVSW
Sbjct: 83  SNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSW 142

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYIS 207
            S+I+GF   G   EA+ LF +M+   + P+ +T + +++AC+    +  G       + 
Sbjct: 143 TSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVY 202

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIAR 266
           E  +   +     ++DM  + G+L  AE+I + + V   V+    ++   +K+G +++ +
Sbjct: 203 EYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGK 262

Query: 267 ---KIFDDLPEK----YVVPWNAI--IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
              K+  DL  +    + V  N +  +G +  A+++++ L     ++  G+      +  
Sbjct: 263 RAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVTRSFV 322

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            + A  +L A          +     N    +   +     +  ++  A +VF ++    
Sbjct: 323 MMEAVKKLHA--------HLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPT 374

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           +  +  ++ GLA      DAI ++ +    G+ PD +TF  +L AC       EG +  +
Sbjct: 375 TFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHS 434

Query: 438 Q------MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
                  +  IF  +  +  Y+   DL+    + +E         +  DVV W +L 
Sbjct: 435 HVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEM--------LVKDVVSWNSLI 483


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/617 (39%), Positives = 370/617 (59%), Gaps = 65/617 (10%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL +  FA S+LI F A+S S ++ Y   +  +++ PN F WN  IRG   +     A+
Sbjct: 55  TGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALAL 114

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             + +M+ + G  P+++T+P L K CA L     G +I  HVLKLGF  D+++H ++I++
Sbjct: 115 VFFVRMIYS-GVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINM 173

Query: 124 FVSCGDLGLACNVFDES-------------------------------CVRNLVSWNSLI 152
           +   G++  A  VFD+S                                V+++VSWN++I
Sbjct: 174 YAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMI 233

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ + G  +EA+ LF DM+   V P+E T++ ++SACAQ   L+LG  +  +I + GL 
Sbjct: 234 AGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLC 293

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L NAL+DMY KCG L++A E+FD M+ + V+S                        
Sbjct: 294 SNLKLVNALIDMYSKCGDLQTARELFDDMLERDVIS------------------------ 329

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  WN +IGGY      KEALALF EM A+G++P  +T +  L +C+ LGA+D G 
Sbjct: 330 -------WNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGK 382

Query: 333 WIHRFIEKENFN-LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
           WIH +I K NFN ++  L T+L+D+YAKCGNI  A QVF  M  ++  ++ A+I GLA+H
Sbjct: 383 WIHAYINK-NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G+A  A   FS+M   G+ P+EITF+GILSAC H GLVD G+++F+ M   +++SPK +H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y CM+DLLGR+GL EEAE L+++M +  D  +WG+L  ACR HG V +GE  A +L EL+
Sbjct: 502 YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELE 561

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P + G YVLL+N+Y  +  W++  ++R  + +RG++K PGC++IEV+ +++EF+V DK H
Sbjct: 562 PDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVH 621

Query: 572 PELEQIYDCLVQLTRHF 588
           P+ E IY  L ++    
Sbjct: 622 PQSEDIYRMLEEVDEQL 638



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 220/400 (55%), Gaps = 4/400 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIH--VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           +I  H++K G    ++  + +I        GD+  A ++F+     NL  WNS+I G   
Sbjct: 47  QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSM 106

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S  P  A+  F  M    VEP+  T   ++ +CA+L   + G++IH ++ + G    V +
Sbjct: 107 SLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFI 166

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
             +L++MY + G++ +A+ +FD    +  +S T +I GYA +G++D AR++FD++P K V
Sbjct: 167 HTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDV 226

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WNA+I GY Q  RSKEAL LF +M+   + P+  T V  LSAC+Q  ALD G  +  +
Sbjct: 227 VSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSW 286

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           IE      N+ L  AL+DMY+KCG++  A ++F +M ER+ +++  +IGG        +A
Sbjct: 287 IEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEA 346

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           ++ F EM+  G+ P EITFL IL +C H G +D G+   A ++  F         + ++D
Sbjct: 347 LALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV-STSLSTSLID 405

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           L  + G +  A Q+   M + + +  W A+     +HG  
Sbjct: 406 LYAKCGNIVAARQVFDGMKIKS-LASWNAMICGLAMHGQA 444


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/556 (42%), Positives = 348/556 (62%), Gaps = 33/556 (5%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           T+ LF+ ++ PN F WN  IRG +      +A++ Y  ++R+ G  P+NFT+P + K CA
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYG-LMRSEGFLPNNFTFPFVLKACA 123

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            L    LG +I   V+K GFD D++V  +++ ++  CG L  A  VFD+   +N+VSW +
Sbjct: 124 RLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTA 183

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I+G++  G  REAI +FR +    + PD  T++ ++SAC QL DLN G  IH  I E G
Sbjct: 184 IISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMG 243

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +   V +  +L+DMY KCG                                ++ AR +FD
Sbjct: 244 MVRNVFVGTSLVDMYAKCGN-------------------------------MEKARSVFD 272

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            +PEK +V W A+I GY      KEA+ LF +MQ   +KPD  T V  LSAC++LGAL+ 
Sbjct: 273 GMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALEL 332

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G W+   +++  F  N VLGTAL+D+YAKCG++++A +VF  M E++ + + AII GLA+
Sbjct: 333 GEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAM 392

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           +G    +   F ++  +G+ PD  TF+G+L  C H GLVDEGR+YF  M   F L+P ++
Sbjct: 393 NGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIE 452

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CMVDLLGR+GLL+EA QLIR+MPM A+ +VWGAL  ACR+H +  + E A  +L+EL
Sbjct: 453 HYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIEL 512

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +P +SG YVLL+N+Y  +  W+EA KVR  M E+ ++K PGCS IEV+G+++EF+V DK 
Sbjct: 513 EPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKY 572

Query: 571 HPELEQIYDCLVQLTR 586
           HP  E+IY  L +LT+
Sbjct: 573 HPLSEKIYAKLDELTK 588



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 197/394 (50%), Gaps = 35/394 (8%)

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           + G   D Y+ N ++       D      +F +    N+  WN++I G V +    +AI 
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
            +  M+ E   P+  T   ++ ACA+L DL LG +IH  + + G    V +  +L+ +Y 
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KCG LE A ++FD + +K VVS T +I GY   G                          
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVG-------------------------- 192

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
                + +EA+ +F  +    + PD+ T V  LSAC+QLG L+ G WIH+ I +     N
Sbjct: 193 -----KFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN 247

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           V +GT+LVDMYAKCGN+ KA  VF  MPE++ +++ A+I G AL+G   +AI  F +M  
Sbjct: 248 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 307

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS-SIFRLSPKLKHYSCMVDLLGRSGLL 465
             + PD  T +G+LSAC   G ++ G      +  + F  +P L   + ++DL  + G +
Sbjct: 308 ENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLG--TALIDLYAKCGSM 365

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
             A ++ + M    D VVW A+     ++G V I
Sbjct: 366 SRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKI 398



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 187/377 (49%), Gaps = 40/377 (10%)

Query: 20  CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN 79
           C  ++   L+   K+  ++ + N  SW   I G++  GK REA+D+++++L      PD+
Sbjct: 155 CLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEM-NLAPDS 213

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
           FT   +   C  LG    G  I   ++++G   +++V  +++ ++  CG++  A +VFD 
Sbjct: 214 FTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDG 273

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              +++VSW ++I G+  +G P+EAI LF  MQ E V+PD  T++G++SACA+L  L LG
Sbjct: 274 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG 333

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
             +   +  +       L  AL+D+Y KCG +  A E+F  M  K  V    +I G A  
Sbjct: 334 EWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMN 393

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G++ I                               +  LF +++  GIKPD  T +  L
Sbjct: 394 GYVKI-------------------------------SFGLFGQVEKLGIKPDGNTFIGLL 422

Query: 320 SACSQLGALDDGIW----IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP- 374
             C+  G +D+G      ++RF    +   ++     +VD+  + G + +A Q+   MP 
Sbjct: 423 CGCTHAGLVDEGRRYFNSMYRFF---SLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPM 479

Query: 375 ERNSLTYTAIIGGLALH 391
           E N++ + A++G   +H
Sbjct: 480 EANAIVWGALLGACRIH 496


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 346/559 (61%), Gaps = 33/559 (5%)

Query: 23  SESKNLDYCTKILFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           + S +L Y  ++     +P  ++ S+N+ IR FL  G   +A+ L+ +ML +    PD  
Sbjct: 113 TSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQH 172

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T     K C+ +    +G  +  +  K GF VD +V N++IH++ SCGD+  A  +F   
Sbjct: 173 TVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTV 232

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
            V+ +++WN++I G+V++G  +E + +F+ M   R   DEVT++ + +AC +L D NLG+
Sbjct: 233 QVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQ 292

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            I  Y  E G+  +  LA AL+DMY KCG+                              
Sbjct: 293 WIAEYAEEKGMLRSRNLATALVDMYAKCGE------------------------------ 322

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            LD AR++FD +  + VV W+A+I GY Q+ R +EALA+F+EMQ T + P+ VT V  LS
Sbjct: 323 -LDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLS 381

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ LGAL+ G W+H +I +++  L V+LGTALVD YAKCG I  A++ F  MP RN+ T
Sbjct: 382 ACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWT 441

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +TA+I G+A +G++ +A+  FS M+   + P ++TF+G+L AC HG LV+EGR++F  M+
Sbjct: 442 WTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMT 501

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
             + + P+++HY CMVDLLGR+GL++EA Q IR+MP+  + VVW AL  AC +H NV IG
Sbjct: 502 QDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIG 561

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           E A  +++ LDP  SG Y+LL+N Y     W+ A  VRK M+E+GVEK PGCS IE+ G 
Sbjct: 562 EEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGT 621

Query: 561 LYEFIVRDKSHPELEQIYD 579
           ++EF   D  HP+L +IY+
Sbjct: 622 IFEFFAEDSEHPQLTEIYE 640


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/590 (41%), Positives = 363/590 (61%), Gaps = 7/590 (1%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMR 60
           T++GL S+ F  SRL+AFCA+S+   L +   +L    + PN++     +RGFL  GK  
Sbjct: 55  TVSGLASNRFPASRLLAFCALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPT 114

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNA 119
            A+ L++++LR+   R       ++F V A+         I     K GF    +   NA
Sbjct: 115 HALTLFRRVLRD---RLAVDARTIVFAVKAAATSSSPTEAIHCVAFKRGFIGQSVLAGNA 171

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEP 178
           ++H++ S   L  A  +FDE   R++VSW +LI+G+ R G P EA R+F R +  E V P
Sbjct: 172 LVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWP 231

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +EVT++   SA  Q+  L LGR +H  I ESG  ++V L NAL+DM+ KCG + +A+E+F
Sbjct: 232 NEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVF 291

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M  K V S T+M+  YAK G L+ A K+F ++P + VV W+ ++  Y  A    EA+ 
Sbjct: 292 DGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIR 351

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMY 357
           +F++M A G++P   T V  LSAC+QL +LD G W++  +I      L   L  A +DM+
Sbjct: 352 IFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMF 411

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG++  A ++F  M ++N +++  +I    LHG+  +A+  F E  G G++PDE T++
Sbjct: 412 AKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYI 471

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+LSAC HGGLV EGR +F +M  ++ + P+ +HY+CM+DLLG+ GLL+EA ++ RSMP+
Sbjct: 472 GVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPV 531

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
            AD   WGAL  ACR+HGNV IG+ AA KL  LDP DSGIYVL++ +Y   + W +   +
Sbjct: 532 GADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKML 591

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           R +M +R V+K PGCSSIEV+G  +EF+V D SH   E IY  L  +  H
Sbjct: 592 RTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNIYLH 641


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/590 (41%), Positives = 363/590 (61%), Gaps = 7/590 (1%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMR 60
           T++GL S+ F  SRL+AFCA+S+   L +   +L    + PN++     +RGFL  GK  
Sbjct: 55  TVSGLASNRFPASRLLAFCALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPT 114

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNA 119
            A+ L++++LR+   R       ++F V A+         I     K GF    +   NA
Sbjct: 115 HALTLFRRVLRD---RLAVDARTIVFAVKAAATSSSPTEAIHCVAFKRGFIGQSVLAGNA 171

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEP 178
           ++H++ S   L  A  +FDE   R++VSW +LI+G+ R G P EA R+F R +  E V P
Sbjct: 172 LVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWP 231

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +EVT++   SA  Q+  L LGR +H  I ESG  ++V L NAL+DM+ KCG + +A+E+F
Sbjct: 232 NEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVF 291

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M  K V S T+M+  YAK G L+ A K+F ++P + VV W+ ++  Y  A    EA+ 
Sbjct: 292 DGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIR 351

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMY 357
           +F++M A G++P   T V  LSAC+QL +LD G W++  +I      L   L  A +DM+
Sbjct: 352 IFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMF 411

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG++  A ++F  M ++N +++  +I    LHG+  +A+  F E  G G++PDE T++
Sbjct: 412 AKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYI 471

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+LSAC HGGLV EGR +F +M  ++ + P+ +HY+CM+DLLG+ GLL+EA ++ RSMP+
Sbjct: 472 GVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPV 531

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
            AD   WGAL  ACR+HGNV IG+ AA KL  LDP DSGIYVL++ +Y   + W +   +
Sbjct: 532 GADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKML 591

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           R +M +R V+K PGCSSIEV+G  +EF+V D SH   E IY  L  +  H
Sbjct: 592 RTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNIYLH 641


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/577 (42%), Positives = 378/577 (65%), Gaps = 8/577 (1%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           ++++ FC      ++ Y  ++L  VQ+P    +N+ I+   +    R+ + L+ + LR  
Sbjct: 52  TKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSE-LRKQ 110

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PDNFT P +FK    LG    G ++ G+V+K GFD    V N+V+ ++ + G + +A
Sbjct: 111 GLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDA--CVCNSVMGMYGALGKMEVA 168

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQ 192
             VFDE   R++VSWN LI+ +V      +AI +FR M+ E  ++ DE T++  +SAC+ 
Sbjct: 169 KKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSV 228

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L +  +G EIH Y+ ++ L +T  + NAL+DMY KCG ++ A  IFD M NK V+  T+M
Sbjct: 229 LRNQEVGEEIHRYV-DAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSM 287

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GYA  G LD AR++F+  P + +V W A+I GYVQ     EAL LF +MQ   ++PD 
Sbjct: 288 VSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDN 347

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
              V  L  C+Q GAL+ G W+H +I + +  L+ V+GTALVD+YAKCG + KAL+VF+E
Sbjct: 348 FILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYE 407

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M ER++ ++T++I GLA++G    A+ +FS+M   G  PD+ITF+G+L+AC HGGLV+EG
Sbjct: 408 MKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEG 467

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-AADVVV--WGALFF 489
           R+YF  M+  +++ PK +HYSC++DLL R+GLL+EAE L+  +P+ ++D+VV  + +L  
Sbjct: 468 RRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLS 527

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR +GN+ + ER   +L  ++ +DS ++ LLA++Y  +N WE+   VR+ M+E G+ K 
Sbjct: 528 ACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKF 587

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           PGCSSIEVNG+L+EF+V   SH E++ I+  L Q+T+
Sbjct: 588 PGCSSIEVNGVLHEFMVGGPSHMEMDDIHSVLGQVTK 624


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/600 (41%), Positives = 367/600 (61%), Gaps = 19/600 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +T++GL +H F  SRL+AFCA+S    +D+   IL     PN++     +R FL      
Sbjct: 60  LTVSGLAAHRFPASRLLAFCALSTPPRVDHAAAILARASAPNAYMLATMMRAFLRARLPS 119

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL----------GLRFLGYEIFGHVLKLGF 110
            A  L+++++R      D  T     K  AS           G+  +  + +GHV +   
Sbjct: 120 RASALFRRVIRES-LPADARTLVFAIKAAASEHEHHSPSGGEGVHCVALK-WGHVAQ--- 174

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
              + V NA++H + +   L  A N+FDE   R++VSW +L++G+ R G   EA R+F  
Sbjct: 175 --SVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCR 232

Query: 171 MQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           M +   ++P+EVT++ +VSA  Q+  L  GR ++ Y+++ G+  +V L NAL+DM+ K G
Sbjct: 233 MVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFG 292

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
              SA E+FDSM  K V S TTM+  YAK G L+ A ++FDD+P +  V W+ +I  Y Q
Sbjct: 293 CAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQ 352

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVV 348
           A + +EA+ LF  M   G++P     V  LSAC+QLG LD G WI+  ++      L V 
Sbjct: 353 ANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVN 412

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           LG A +D+YAKCG+   A ++F EM ERN +++ ++I   A+HG++ + +  F ++ G  
Sbjct: 413 LGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTC 472

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           ++PDEITFLG+LSAC H GLV EGR+YF +M  I+ + PK +HY+CM+DLLG+ GLLEEA
Sbjct: 473 IVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEA 532

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528
            ++ + MPM  D   WGAL  ACR++GNV IGE AA KL++L+P DSGIYVL++ +Y   
Sbjct: 533 FEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASK 592

Query: 529 NMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           N W++   +R +M ERGV+K PGCSSIEV+G  +EF+V D SH   E IY  L  +  H 
Sbjct: 593 NKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHVHSEDIYAALKNIYFHL 652


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/575 (40%), Positives = 357/575 (62%), Gaps = 3/575 (0%)

Query: 16  LIAFCAISESKN--LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           L ++CA++++ +  L +  ++   +  P+   +N  IR +  +   REA+ L++ MLR G
Sbjct: 48  LASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRG 107

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
              P+ FT P + K C     R     + G  L+LG    ++V NA++H + S G LG +
Sbjct: 108 -ILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDS 166

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
              FDE   RN+VSWNS+I G+ ++G  RE   LF +M+ +    DE T++ ++ AC+Q 
Sbjct: 167 RRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQE 226

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            +L +GR +H  +  SG  + + L +AL+DMY KCG L  A   F+ M  K+VVS T+M+
Sbjct: 227 GNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSML 286

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
               K G ++ AR  FD +PE+ +V WNA+I  YVQ  +  EAL L+++MQ+ G+ PD +
Sbjct: 287 CAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEI 346

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T V  LSA  ++G L  G  +H +I    +N +V L  +L+DMYAKCG +  A+ +F EM
Sbjct: 347 TLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEM 406

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             RN +++  IIGGLA+HG+ALD I++F  M+     PD ITF+ +LSAC HGGL++ G+
Sbjct: 407 CNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQ 466

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            YF  M  ++ +  +++HY+CMVDLLGR G LE+A  LI+ MPM  DVVVWGAL  ACR+
Sbjct: 467 HYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRI 526

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           HGNV IG +   +LLEL+    G++VL++N+  +++ WE+  ++RK+M+E G  K  G S
Sbjct: 527 HGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVS 586

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           SIE+N  ++EF V D  H    +IY  + QL+ H 
Sbjct: 587 SIEINNSIHEFGVEDIRHERSSEIYAVVDQLSYHL 621


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 360/612 (58%), Gaps = 66/612 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A SRL+ FC +S +   L Y   +   +Q PN   WN   RG   +   
Sbjct: 25  MIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDP 84

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+++T+P L K CA L +   G +I GHVLKLG+++D+YVH +
Sbjct: 85  VSAIKLYVCMI-SLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTS 143

Query: 120 VIHVFV-------------------------------SCGDLGLACNVFDESCVRNLVSW 148
           +I ++V                               S G +  A  +FDE  V+++VSW
Sbjct: 144 LISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSW 203

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF++M    V+PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 204 NAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDD 263

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            GL   + + NAL+D+Y KCG++E+A              C                  +
Sbjct: 264 HGLGSNLKIVNALIDLYSKCGEVETA--------------CG-----------------L 292

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F  L  K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+QLGA+
Sbjct: 293 FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I+K  +       L T+L+DMYAKCG+I  A QVF+ M  R      A+I 
Sbjct: 353 DFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIF 412

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  A   FS M   G+ PD+ITF+G+LSAC H G++D GR+ F  M+  ++++
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKIT 472

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG  GL +EAE++I +M M  D V+W +L  AC++HGNV +GE  A K
Sbjct: 473 PKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQK 532

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E   +R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 533 LIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFII 592

Query: 567 RDKSHPELEQIY 578
            DK HP   +IY
Sbjct: 593 GDKFHPRNREIY 604


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/587 (39%), Positives = 359/587 (61%), Gaps = 37/587 (6%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G+       S+L+ + ++S   +  +   + F +  PN FSWN   R +  +    E +
Sbjct: 54  SGVFRDPVVSSKLLYY-SLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETI 112

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            LY  MLRNG T PDN+++P + K CA L L   G EI    LKLG  +D++V NA+I  
Sbjct: 113 ALYNLMLRNG-TLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISA 171

Query: 124 FVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDE 180
           F SCG +  A  VFD   + VR++VSWNS+I+G+++S     A+++F ++  +  + PDE
Sbjct: 172 FSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDE 231

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT++  +S C +L  L+LG++IH   + SG  L V + ++L+DMY KCG++E A      
Sbjct: 232 VTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDA------ 285

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                    RK+FD +P +  V W ++I GY Q+   KEA+ LF
Sbjct: 286 -------------------------RKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELF 320

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EMQ  G   DA T    LSAC   GAL  G WIH + E+ +  +++    AL+ MY+KC
Sbjct: 321 REMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKC 380

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGI 419
           G+I KAL++FH + + +  +++A+I GLA++G++  A+  FS+M  +  + P+EITFLG+
Sbjct: 381 GDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGV 440

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC HGG VD+G  YF  M+ I+ L+P ++HY CMVDLLGR+ LL EAE+ IR++P+  
Sbjct: 441 LCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQP 500

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           DVV+W +L FACR HGN+ + E AA ++ EL+P+  G  VLL+N+Y  ++ W +  +VRK
Sbjct: 501 DVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRK 560

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            M  + ++K PGCS +E++GL++E  V D+SHPE+  IY+ ++ + +
Sbjct: 561 DMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINK 607


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/561 (41%), Positives = 348/561 (62%), Gaps = 2/561 (0%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           T L +  F  S +I   ++S S NL     +   ++ P    WN  IRG  ++    EA+
Sbjct: 43  TQLHTDPFLMSDVIRSYSLS-STNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAI 101

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            +Y +M   G T  +N T   LFK CA +     G +I  H LKLGF+  ++V NA+IH+
Sbjct: 102 HMYTRMHHQGIT-GNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHM 160

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG LG A  +FD    R+LVSWN+LI G+ +    +E +RLF  M    ++ D VTM
Sbjct: 161 YAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTM 220

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + ++ AC+ L D      +  YI E+ L + V L N L+DMY +    E A+ +FD M  
Sbjct: 221 VKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRE 280

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + +VS   +++G+AK G L  ARK+FD++P++ V+ W ++I GY QA +  +A+ LF EM
Sbjct: 281 RNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEM 340

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            A  +KPD VT    LSAC+ LG LD G  +H +I +     ++ +G +L+DMY KCG +
Sbjct: 341 MAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMV 400

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KAL+VFH M +++S+++T++I GLA++G A  A+  FS+M+  G+ P   TF+GIL AC
Sbjct: 401 EKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLAC 460

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLV++G +YF  M S+  L P +KHY C+VDLL RSG +++A + I+ MP+  DVVV
Sbjct: 461 AHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVV 520

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L  AC+LHGNV + E A  +LLELDP DSG YVLL+N Y   + W++A K+R++ME+
Sbjct: 521 WRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMED 580

Query: 544 RGVEKTPGCSSIEVNGLLYEF 564
             V+K  G SSIEV+G++  +
Sbjct: 581 SDVQKPSGSSSIEVDGMVSNY 601


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 356/612 (58%), Gaps = 66/612 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+LI FC +S     L Y   +   +Q PN   WN   RG   +   
Sbjct: 13  MIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDP 72

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+++T+P L K CA       G +I GHVLKLG D+D+YVH +
Sbjct: 73  VSALKLYVCMI-SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 131

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I ++V  G L  A  VFDES                                V+++VSW
Sbjct: 132 LISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSW 191

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF+DM    V PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 192 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 251

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y KCG+LE+A              C                  +
Sbjct: 252 HGFGSNLKIVNALIDLYSKCGELETA--------------CG-----------------L 280

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ LP K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+
Sbjct: 281 FEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 340

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I+K  +       L T+L+DMYAKCG+I  A QVF+ +  ++  ++ A+I 
Sbjct: 341 DIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 400

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  +   FS M   G+ PD+ITF+G+LSAC H G++D GR  F  M+  ++++
Sbjct: 401 GFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 460

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG SGL +EAE++I +M M  D V+W +L  AC++HGNV +GE  A  
Sbjct: 461 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQN 520

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E    R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 521 LIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFII 580

Query: 567 RDKSHPELEQIY 578
            DK HP   +IY
Sbjct: 581 GDKFHPRNREIY 592


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/561 (40%), Positives = 346/561 (61%), Gaps = 34/561 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LDY T++    Q P+ F +N  IR +  +     A+ +Y +M        D +TYP +FK
Sbjct: 54  LDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFK 113

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CAS      G E+ G ++++G+++D ++ +++++ ++ CG++G A  VFDE   +++V 
Sbjct: 114 ACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVF 173

Query: 148 WNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           WN+LI G+ R G   ++  +F++M +++ V P+E TM+G++ AC + ++L LGR IH Y+
Sbjct: 174 WNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYM 233

Query: 207 -SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
             +  L   V L  AL+++YVKCG                               +LD A
Sbjct: 234 MKDMVLREGVKLEAALINLYVKCG-------------------------------YLDGA 262

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           RK+FD++PEK  V WN++I GY Q     E + L  EM  + +KPD  T    LSAC+Q+
Sbjct: 263 RKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQM 322

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           GA + G W+HRF EK+    +V +GTAL+DMYAKCG I  A +VF +M ERN  T+ AI+
Sbjct: 323 GAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAIL 381

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G A HG+A  AI  FSEM   G  PD ITFL +L AC H GLV+ G++YF  M   +++
Sbjct: 382 SGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKI 441

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P+++HY CMVDLLGR+GLL+EA +LI+ M +  +VVVWGAL  AC +HGN+ IGE AA 
Sbjct: 442 PPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAH 501

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
            +++L+  D G YV+LAN+Y  +  +     VR+MM E+G+ K+ GCS IE+  +++EF+
Sbjct: 502 HMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFV 561

Query: 566 VRDKSHPELEQIYDCLVQLTR 586
           V DK HP  E+IY  L +L++
Sbjct: 562 VADKMHPRSEEIYSVLDELSK 582


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/587 (39%), Positives = 362/587 (61%), Gaps = 7/587 (1%)

Query: 7   ISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           I+ G AP+     +L  F       ++ Y  K+   +  P+   WN  I+G+ +     E
Sbjct: 58  ITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGE 117

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            V LY  ML+ G T PD+ T+P L   +    G    G ++  HV+K G   ++YV NA+
Sbjct: 118 GVRLYLNMLKEGVT-PDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++  CG + +A  VFD  C  ++ SWN +I+G+ R     E+I L  +M+   V P  
Sbjct: 177 VKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTS 236

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT++ ++SAC++++D +L + +H Y+SE     ++ L NAL++ Y  CG+++ A  IF S
Sbjct: 237 VTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRS 296

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V+S T+++ GY + G L +AR  FD +P +  + W  +I GY++A    E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EMQ+ G+ PD  T V  L+AC+ LG+L+ G WI  +I+K     +VV+G AL+DMY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G   KA +VFH+M +R+  T+TA++ GLA +G+  +AI  F +M  + + PD+IT+LG+L
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC H G+VD+ RK+FA+M S  R+ P L HY CMVD+LGR+GL++EA +++R MPM  +
Sbjct: 477 SACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPN 536

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            +VWGAL  A RLH +  + E AA K+LEL+P +  +Y LL N+Y     W++  +VR+ 
Sbjct: 537 SIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRK 596

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           + +  ++KTPG S IEVNG  +EF+  DKSH + E+IY  L +L + 
Sbjct: 597 IVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/587 (39%), Positives = 362/587 (61%), Gaps = 7/587 (1%)

Query: 7   ISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           I+ G AP+     +L  F       ++ Y  K+   +  P+   WN  I+G+ +     E
Sbjct: 58  ITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGE 117

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            V LY  ML+ G T PD+ T+P L   +    G    G ++  HV+K G   ++YV NA+
Sbjct: 118 GVRLYLNMLKEGVT-PDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++  CG + +A  VFD  C  ++ SWN +I+G+ R     E+I L  +M+   V P  
Sbjct: 177 VKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTS 236

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT++ ++SAC++++D +L + +H Y+SE     ++ L NAL++ Y  CG+++ A  IF S
Sbjct: 237 VTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRS 296

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V+S T+++ GY + G L +AR  FD +P +  + W  +I GY++A    E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EMQ+ G+ PD  T V  L+AC+ LG+L+ G WI  +I+K     +VV+G AL+DMY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G   KA +VFH+M +R+  T+TA++ GLA +G+  +AI  F +M  + + PD+IT+LG+L
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC H G+VD+ RK+FA+M S  R+ P L HY CMVD+LGR+GL++EA +++R MPM  +
Sbjct: 477 SACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPN 536

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            +VWGAL  A RLH +  + E AA K+LEL+P +  +Y LL N+Y     W++  +VR+ 
Sbjct: 537 SIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRK 596

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           + +  ++KTPG S IEVNG  +EF+  DKSH + E+IY  L +L + 
Sbjct: 597 IVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/616 (40%), Positives = 360/616 (58%), Gaps = 70/616 (11%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+L+ FC +S       Y   +   +Q PN   WN   RG   +   
Sbjct: 11  MIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDP 70

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  PD++T+P L K CA   +R  G +I GHVLKLGFD+D+YVH +
Sbjct: 71  VSALKLYLVMI-SLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTS 129

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVS-------------------------------W 148
           +I ++   G L  A  VFD S  R++VS                               W
Sbjct: 130 LISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSW 189

Query: 149 NSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           N++I+G+V +G  +EA+ LF++M +   V PDE TM+ +VSACAQ + + LGR +H +I+
Sbjct: 190 NAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWIN 249

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G    + + NAL+D+Y                               +KFG ++ A +
Sbjct: 250 DHGFASNLKIVNALIDLY-------------------------------SKFGEVETACE 278

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD L  K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA
Sbjct: 279 LFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 338

Query: 328 LDDGIWIHRFIEKE--NFNLNVV-LGTALVDMYAKCGNIAKALQVF-HEMPERNSLTYTA 383
           +D G WIH +I K+      NV  L T+L+DMYAKCG+I  A QVF   M  R+  T+ A
Sbjct: 339 IDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNA 398

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A+HG+A  A   FS M   G+ PD+ITF+G+LSAC H G++D GR  F  M+  +
Sbjct: 399 MISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGY 458

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++PKL+HY CM+DLLG SGL +EAE++I +MPM  D V+W +L  AC++HGN+ +GE  
Sbjct: 459 EITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESF 518

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV-EKTPGCSSIEVNGLLY 562
           A KL++++P +SG YVLL+N+Y  +  W E  K+R ++ ++G+ +K PGCSSIE++ +++
Sbjct: 519 AKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVH 578

Query: 563 EFIVRDKSHPELEQIY 578
           EFI+ DK HP+  +IY
Sbjct: 579 EFIIGDKLHPQNREIY 594


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/546 (41%), Positives = 342/546 (62%), Gaps = 3/546 (0%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           S  WN  I  + +  + R A+++Y Q LR      DNF  P + K C  +    LG EI 
Sbjct: 89  SAQWNFVITSYTKRNQPRNALNVYAQ-LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIH 147

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           G VLK G D D++V NA++ ++  C  +  A  VFD+   R++VSW+++I    R+    
Sbjct: 148 GFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFD 207

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI--SESGLTLTVPLANA 220
            A+ L R+M   +V P EV M+ MV+  A   ++ +G+ +H Y+  + +   + VP   A
Sbjct: 208 MALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTA 267

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMY KCG L  A ++F+ +  KTVVS T MI G  +   L+ AR +FD    + V+ W
Sbjct: 268 LLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIW 327

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A++  Y QA    +A  LF +M+ +G++P  VT V  LS C+  GALD G W+H +I+K
Sbjct: 328 TAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDK 387

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           E   ++ +L TALVDMYAKCG+I  A ++F E   R+   + AII G A+HG   +A+  
Sbjct: 388 ERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDI 447

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F+EM   G+ P++ITF+G+L AC H GLV EG+K F +M   F L P+++HY CMVDLLG
Sbjct: 448 FAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLG 507

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+GLL+EA ++I+SMP+  + +VWGAL  ACRLH N  +GE AA +LLE++P++ G  VL
Sbjct: 508 RAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVL 567

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           ++N+Y  +N W +A  VRK M+  G++K PG S IEVNG ++EF++ D+SHP++ +I + 
Sbjct: 568 MSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEM 627

Query: 581 LVQLTR 586
           L ++ R
Sbjct: 628 LAEMRR 633



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 147/306 (48%), Gaps = 18/306 (5%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           +IA C    S  L+    +  + QN +   W   +  + +   + +A +L+ QM R  G 
Sbjct: 299 MIAGCI--RSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGV 355

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           RP   T   L  +CA  G   LG  +  ++ K   +VD  ++ A++ ++  CGD+  A  
Sbjct: 356 RPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 415

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +F E+  R++  WN++I GF   G+  EA+ +F +M+ + V+P+++T IG++ AC+    
Sbjct: 416 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 475

Query: 196 LNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT--------V 246
           +  G+++   +  + GL   +     ++D+  + G L+ A E+  SM  K         V
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG-YVQAKRSKEALALFHEMQA 305
            +C   +    + G L  A ++ +  PE     +N ++   Y  A R  +A  +   M+ 
Sbjct: 536 AACR--LHKNPQLGEL-AATQLLEIEPEN--CGYNVLMSNIYAAANRWSDAAGVRKTMKT 590

Query: 306 TGIKPD 311
            G+K +
Sbjct: 591 VGMKKE 596


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 357/612 (58%), Gaps = 66/612 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+LI F  +S     L Y   +  ++Q PN   WN   RG   +   
Sbjct: 25  MIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDP 84

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+++T+P L K CA       G +I GHVLKLG D+D+YVH +
Sbjct: 85  VSALYLYVCMI-SLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTS 143

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I ++V  G    A  VFD+S                                V+++VSW
Sbjct: 144 LIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSW 203

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N+LI+G+  +G  +EA+ LF++M    V+PDE TM+ ++SACAQ   + LGR++H +I +
Sbjct: 204 NALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDD 263

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y+KCG++E+A                                 +
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETAS-------------------------------GL 292

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ L  K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I+K  +  +    L T+L+DMYAKCG+I  A QVF  M  R+  ++ A+I 
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  A   FS M   G+ PD+ITF+G+LSAC H G++D GR  F  M+  ++++
Sbjct: 413 GFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKIT 472

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG SGL +EAE++I SM M  D V+W +L  AC++HGNV +GE  A  
Sbjct: 473 PKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQN 532

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++SG YVLL+N+Y  +  W E  K R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 533 LIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFII 592

Query: 567 RDKSHPELEQIY 578
            DK HP   +IY
Sbjct: 593 GDKLHPRNREIY 604


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/577 (40%), Positives = 347/577 (60%), Gaps = 9/577 (1%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           L ++CA+     + Y  ++   + +P+ F +N  IR +  +   +EA+ L + M+R G  
Sbjct: 48  LASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRG-I 106

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYE----IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
            P+ FT P L K CA    R   +E      G V+KLGF   ++V NA++H + S G LG
Sbjct: 107 LPNEFTLPFLLKACA----RVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLG 162

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
            +   FDE   RN+VSWNS+ING+ ++G  REA  LF  M+ + +  DE T++ ++ AC+
Sbjct: 163 DSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACS 222

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
              +L  G+ +H ++   G  + + LANAL+DMY KCG L  A   FD M  K  VS T+
Sbjct: 223 AEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTS 282

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           M+   AK   +D AR  F+ +PEK ++ WNA+I  YVQ  R  EAL L++ M+  G+ PD
Sbjct: 283 MLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPD 342

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
             T    LSAC QLG L  G  IH  I     N  V L  +L+DMYA+CG +  A+ +F 
Sbjct: 343 EFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFS 402

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           EMP +N +++ AIIG LA+HG+A DA+ +F  M+     PDEITF+ +LSAC HGGL++ 
Sbjct: 403 EMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEA 462

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G+ YF  M  ++ + P ++HY+CMVDLLGR G L +A  LI+ MPM  DVVVWGAL  AC
Sbjct: 463 GQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGAC 522

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R+HG++ IG++   +LLEL+    G++VL++NM  +++ WE+  ++RK+M E G++K  G
Sbjct: 523 RIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMG 582

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            SSIE N  ++E       H   + +Y    +L  H 
Sbjct: 583 VSSIETNSNIHESGAEGIGHESSDDMYVGDDRLPHHL 619


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/577 (40%), Positives = 347/577 (60%), Gaps = 9/577 (1%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           L ++CA+     + Y  ++   + +P+ F +N  IR +  +   +EA+ L + M+R G  
Sbjct: 48  LASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRG-I 106

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYE----IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
            P+ FT P L K CA    R   +E      G V+KLGF   ++V NA++H + S G LG
Sbjct: 107 LPNEFTLPFLLKACA----RVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLG 162

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
            +   FDE   RN+VSWNS+ING+ ++G  REA  LF  M+ + +  DE T++ ++ AC+
Sbjct: 163 DSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACS 222

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
              +L  G+ +H ++   G  + + LANAL+DMY KCG L  A   FD M  K  VS T+
Sbjct: 223 AEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTS 282

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           M+   AK   +D AR  F+ +PEK ++ WNA+I  YVQ  R  EAL L++ M+  G+ PD
Sbjct: 283 MLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPD 342

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
             T    LSAC QLG L  G  IH  I     N  V L  +L+DMYA+CG +  A+ +F 
Sbjct: 343 EFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFS 402

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           EMP +N +++ AIIG LA+HG+A DA+ +F  M+     PDEITF+ +LSAC HGGL++ 
Sbjct: 403 EMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEA 462

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G+ YF  M  ++ + P ++HY+CMVDLLGR G L +A  LI+ MPM  DVVVWGAL  AC
Sbjct: 463 GQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGAC 522

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R+HG++ IG++   +LLEL+    G++VL++NM  +++ WE+  ++RK+M E G++K  G
Sbjct: 523 RIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMG 582

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            SSIE N  ++E       H   + +Y    +L  H 
Sbjct: 583 VSSIETNSNIHESGAEGIGHESSDDMYVGDDRLPHHL 619


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 344/579 (59%), Gaps = 38/579 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +  +GL  H F  S ++     S +K+L Y   +   +  P  F WN  IRGF  + + +
Sbjct: 31  LITSGLAHHTFFLSDILR----SATKDLGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQ 86

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             +  Y + LRN G  PD  T+PLL K  + L      ++ + H++K G D D +V N++
Sbjct: 87  MVLVAYSR-LRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHIVKFGLDFDAFVQNSL 144

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           +  F  CG +  +  +F E+  +++VSW +LING +R+G   EA+  F +M+   VE DE
Sbjct: 145 VSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDE 204

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTL-TVPLANALMDMYVKCGKLESAEEIFD 239
           VT++ ++ A A L D+  GR +H +  ESG  +  V + +AL+DMY KCG          
Sbjct: 205 VTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCG---------- 254

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                + D A K+F+++P + +V W A+I GYVQ  R KEAL +
Sbjct: 255 ---------------------YCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKV 293

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F EM   GI+P+  T    L+AC+QLG+LD G W+H ++++    LN  LGTALVDMY+K
Sbjct: 294 FQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSK 353

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG + +AL VF ++P ++   +TA+I GLA+ G AL +++ FS+MI   + P+ +TFLG+
Sbjct: 354 CGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGV 413

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSAC HGGLVDEG + F  M   +RL P + HY CMVDLLGR+G LEEA + I SMPM  
Sbjct: 414 LSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEP 473

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VWGALF  C +H    +GE     L++L P  SG Y+LLAN+Y     WE A  VR+
Sbjct: 474 TPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRR 533

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +M+ +GV+K+PGCS IEVNG+++EFI  DKSH E   +Y
Sbjct: 534 LMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHTESINVY 572


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/574 (40%), Positives = 354/574 (61%), Gaps = 3/574 (0%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  + LI F    E   +D   ++   +   N  SW   I G+ + G  +EAV L+ +M+
Sbjct: 175 FVENSLIHF--YGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMV 232

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
             G  RP++ T   +   CA L    LG ++   + +L  +V+  + NA++ +++ CG +
Sbjct: 233 EVG-IRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FDE   +NLV +N++++ +VR G  RE + +  +M      PD +TM+  VSAC
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSAC 351

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           ++L+D++ G+  H Y+  +GL     + NA+++MY+KCGK E A  +FD M+NKT VS  
Sbjct: 352 SELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWN 411

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++I G+ + G ++ A KIF  +P+  +V WN +IG  VQ    KEA+ LF  MQ+ GI  
Sbjct: 412 SLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITA 471

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D VT V   SAC  LGALD   WIH +I+K++ + ++ LGTALVDM+A+CG+   A+QVF
Sbjct: 472 DKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVF 531

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
           ++M +R+   +TA IG +A+ G    AI  F EM+  G+ PD + F+ +L+A  HGGLV+
Sbjct: 532 NKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVE 591

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           +G   F  M  I+ ++P+  HY CMVDLLGR+GLL EA  LI SM M  + V+WG+L  A
Sbjct: 592 QGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAA 651

Query: 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
           CR+H NV I   AA ++ ELDP+ +GI+VLL+N+Y  +  W++  KVR  ++E+G  K P
Sbjct: 652 CRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMP 711

Query: 551 GCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           G SSIE+NG ++EF   D+SHPE+  I   L ++
Sbjct: 712 GSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEI 745



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 154/536 (28%), Positives = 259/536 (48%), Gaps = 77/536 (14%)

Query: 1   MTITGLISHGFAPSRLIAFCA-ISESKNLDYCTKILFNVQNPNS-----FSWNVAIRGFL 54
           +T  GL  H  + + LI+ C  +   ++L+Y  K L      N      + ++  IRGF 
Sbjct: 56  ITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFS 115

Query: 55  ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
             G   +A+ +++Q++  G   PDNFT+P +   C        G+++ G ++K+GF+ DM
Sbjct: 116 ACGLGYKAIVVFRQLMCMGAV-PDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDM 174

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           +V N++IH +  CG++     VFD+   RN+VSW SLI G+ + G  +EA+ LF +M   
Sbjct: 175 FVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEV 234

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            + P+ VTM+G++SACA+L+DL LG ++   I E  L +   + NAL+DMY+KCG ++ A
Sbjct: 235 GIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKA 294

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            +IFD  V+K                                +V +N I+  YV+   ++
Sbjct: 295 RKIFDECVDKN-------------------------------LVLYNTIMSNYVRQGLAR 323

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           E LA+  EM   G +PD +T +  +SACS+L  +  G W H ++ +        +  A++
Sbjct: 324 EVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAII 383

Query: 355 DMYAKC-------------------------------GNIAKALQVFHEMPERNSLTYTA 383
           +MY KC                               G++  A ++F  MP+ + +++  
Sbjct: 384 NMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNT 443

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR---KYFAQMS 440
           +IG L       +AI  F  M   G+  D++T +G+ SAC + G +D  +    Y  +  
Sbjct: 444 MIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKD 503

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             F +       + +VD+  R G  + A Q+   M +  DV  W A   A  + GN
Sbjct: 504 IHFDMHLG----TALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGN 554


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 353/554 (63%), Gaps = 2/554 (0%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ++GL +  +A S+++   AI +  +L +  K+   ++ P +F WN+ IRG  ++    +A
Sbjct: 13  VSGLYNCHYAMSKVLRSYAILQP-DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADA 71

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +  YK+  + GG  PDN T+P + K CA +     G ++  H+ KLG   D++V N++IH
Sbjct: 72  IAFYKKA-QGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIH 130

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++ +CG+L  A +VFDE  V+++VSWNSLI G+ +    ++ + LF+ MQ E V+ D+VT
Sbjct: 131 LYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVT 190

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           MI +VSAC +L D ++   +  YI +  + + V L N L+D + + G+L+SAE++F +M 
Sbjct: 191 MIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMK 250

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            + +V+   MI  YAK   +  ARKIFD +P+K ++ W+++I GY QA    +AL +F +
Sbjct: 251 VRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQ 310

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQ   +KPDA+     +S+C+ LGALD G W+H ++ + N   + ++  +L+DMY KCG+
Sbjct: 311 MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGS 370

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
             +ALQVF EM E+++L++ +II GLA +G   ++++ F  M+  G  P+ +TFLG+L A
Sbjct: 371 AKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIA 430

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C +  LV+EG  +F  M  ++ L P++KHY C+VDLLGR+G LE+A + I  MP+  D V
Sbjct: 431 CANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPV 490

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           VW  L  +C  HG+V+I E    KL EL+P +SG Y LL+N Y  ++ W EA  VR+ M 
Sbjct: 491 VWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMA 550

Query: 543 ERGVEKTPGCSSIE 556
           +  V K+PGCS++E
Sbjct: 551 DTDVRKSPGCSAVE 564


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/551 (42%), Positives = 340/551 (61%), Gaps = 2/551 (0%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           + +P+   +N   R +  +   REA+ L++ MLR G   P+ FT P + K C        
Sbjct: 5   ILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRG-VLPNEFTLPFVVKACTRAQAWDN 63

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
              + G  LKLGF   ++V NA++H + S G LG +   FDE   RN+VSWNS+I G+ +
Sbjct: 64  ALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQ 123

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +G  REA  LF +M+ +    DE T+  ++ AC+Q  +L  GR +H  +  SG  + + L
Sbjct: 124 AGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLIL 183

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
             AL+DMY KCG L  A   F+ M  K+VVS T+M+    K G +D AR  FD +PE+  
Sbjct: 184 GGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNT 243

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WN +I  YVQ  +  EAL L+ +MQ+ G  PD  T V  LSAC ++G L  G  +H +
Sbjct: 244 VSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLY 303

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I     N ++ L  +L+DMYAKCG +  A+++F EM  RN +++  IIGGLA+HG+ALDA
Sbjct: 304 IRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDA 363

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           I++F  M+     PD ITF+ +LS+C HGGL++ G+ YF  M  ++ +  +++HY+CMVD
Sbjct: 364 ITFFRSMVR-NTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVD 422

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR G LE+A  LI+ MPM  DVVVWGAL  ACR+HGNV IG++   +LLEL+    G+
Sbjct: 423 LLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGL 482

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +VL++N+  ++N WE+  ++RK+M+ERG  K  G SSIE+N  ++EF V D  H    +I
Sbjct: 483 FVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHESSSEI 542

Query: 578 YDCLVQLTRHF 588
           Y  + QL+ H 
Sbjct: 543 YAVVDQLSYHL 553



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 169/391 (43%), Gaps = 64/391 (16%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +FD     + V +N++   +  S  PREA+RL R M    V P+E T+  +V AC + + 
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            +    +H    + G    V +ANAL+  Y   G L  +   FD M  + VVS  +MI  
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMI-- 118

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                                        GGY QA  ++EA ALF EM+  G   D  T 
Sbjct: 119 -----------------------------GGYAQAGDTREACALFGEMRRQGFLGDEFTL 149

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH---- 371
              L ACSQ G L+ G  +H  +      ++++LG ALVDMY+KCG++  A + F     
Sbjct: 150 ASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPI 209

Query: 372 ---------------------------EMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
                                       MPERN++++  +I      G+  +A+  + +M
Sbjct: 210 KSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQM 269

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G  PDE T + +LSAC   G +  G+     +      +P +   + ++D+  + G 
Sbjct: 270 QSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIH-NPDISLINSLLDMYAKCGQ 328

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           ++ A +L R M    +VV W  +     +HG
Sbjct: 329 VDTAIRLFREM-CNRNVVSWNVIIGGLAMHG 358



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 8/260 (3%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
            CA ++  ++D       ++   N+ SWN  I  +++ G+  EA+DLYKQM ++ G  PD
Sbjct: 219 LCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQM-QSHGPAPD 277

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
             T   +   C  +G   +G  +  ++     + D+ + N+++ ++  CG +  A  +F 
Sbjct: 278 EATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFR 337

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           E C RN+VSWN +I G    G   +AI  FR M +    PD +T + ++S+C+    L  
Sbjct: 338 EMCNRNVVSWNVIIGGLAMHGRALDAITFFRSM-VRNTSPDGITFVALLSSCSHGGLLET 396

Query: 199 GREIHWYISES---GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           G+  H++ S      +   V     ++D+  + G LE A  +   M  K  V     ++G
Sbjct: 397 GQ--HYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLG 454

Query: 256 YAKF-GFLDIARKIFDDLPE 274
             +  G + I +++   L E
Sbjct: 455 ACRIHGNVKIGKQVIKQLLE 474



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 9/280 (3%)

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD + +   V +N I   Y  +   +EAL L   M   G+ P+  T    + AC++  A
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            D+ + +H    K  F   V +  AL+  YA  G++  + + F EM  RN +++ ++IGG
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
            A  G   +A + F EM   G + DE T   +L AC   G ++ GR     M  +   SP
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLM--LVSGSP 178

Query: 448 -KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
             L     +VD+  + G L  A +    MP+ + VV W ++  A   HG+V     AA  
Sbjct: 179 VDLILGGALVDMYSKCGDLCMARRCFEMMPIKS-VVSWTSMLCAQTKHGSVD----AARC 233

Query: 507 LLELDPQDSGI-YVLLANMYRDSNMWEEAGKVRKMMEERG 545
             +  P+ + + +  + + Y     + EA  + K M+  G
Sbjct: 234 WFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHG 273


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/581 (41%), Positives = 346/581 (59%), Gaps = 36/581 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +  +GL+   F  S+++ F A         C  +        SF +N  I G++     +
Sbjct: 28  LVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYVGGEFPQ 87

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            AV +Y++M+R+G   PD FT+P+L K C++      G ++ G V+KLG   D YV N++
Sbjct: 88  MAVSVYRRMVRDGFV-PDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSL 146

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I  + +CGD   A  VFDE  VR++VSWNSLI+GF+++G   EAI +F  M    VEP  
Sbjct: 147 IRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSM 203

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T++ +++ACA+  DL  G+ IH  I E    + + L NA++DMYVK G    A      
Sbjct: 204 TTLVSVLAACARNGDLCTGKGIHGVI-ERRFKVNLVLGNAMLDMYVKNGCFYEA------ 256

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                    + IFD+LP + +V W  +I G VQ+   K++L LF
Sbjct: 257 -------------------------KNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELF 291

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
             M+  GI PDA+     LSAC+ LG LD G W+H +I +     ++ +GTA+VDMYAKC
Sbjct: 292 SMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKC 351

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G I  AL++F+ M +RN+ T+ A++ GLA+HG   +A++ F  MI  G+ P+EITFL IL
Sbjct: 352 GCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAIL 411

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           +ACCH GLVDEGRKYF  MS ++ L PKL+HY CM+DL  R+GLLEEA +L R+MPM  D
Sbjct: 412 TACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPD 471

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           V++WG L  AC   GN+ +  R    +LELD  DSG++VLL+N+   +  W    ++R++
Sbjct: 472 VLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRL 531

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           M++RGV K PG S IEV+G  +EF+V D SH + E+IY  L
Sbjct: 532 MKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVL 572



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 204/437 (46%), Gaps = 50/437 (11%)

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG-LACNVF 137
           N  + LL  +     LR    +I   ++  G   D +V + V+  F +  + G  AC+  
Sbjct: 3   NLKWVLLDSIKDCKNLRIF-RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYL 61

Query: 138 DESCVR-NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           ++   R     +NSLING+V   FP+ A+ ++R M  +   PD  T   ++ AC+     
Sbjct: 62  EQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGS 121

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
             GR++H  + + GL     + N+L+  Y  CG                  SC       
Sbjct: 122 REGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDF----------------SC------- 158

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
                   A K+FD++  + VV WN++I G+++A    EA+++F  M    ++P   T V
Sbjct: 159 --------AGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLV 207

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             L+AC++ G L  G  IH  IE+  F +N+VLG A++DMY K G   +A  +F E+P R
Sbjct: 208 SVLAACARNGDLCTGKGIHGVIERR-FKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTR 266

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG---R 433
           + +++T +I GL        ++  FS M  +G+ PD I    +LSAC   G +D G    
Sbjct: 267 DIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVH 326

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +Y  Q      +   +   + +VD+  + G +E A ++  SM    +   W AL     +
Sbjct: 327 EYINQRG----IKWDIHIGTAIVDMYAKCGCIEMALKIFYSMS-QRNTFTWNALLCGLAM 381

Query: 494 HGNVSIGERAAMKLLEL 510
           HG V      A+ L E+
Sbjct: 382 HGLV----HEALNLFEV 394


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/618 (38%), Positives = 360/618 (58%), Gaps = 66/618 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+L+  C IS     L Y   +   +Q PN   WN   RG   +   
Sbjct: 56  MIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDP 115

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+++T+P L K CA       G +I GHVLKLG+D+D++VH +
Sbjct: 116 VSALKLYVCMI-SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTS 174

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I V+V  G L  A  VFD S                                V+++VSW
Sbjct: 175 LISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSW 234

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF++M    + PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 235 NAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 294

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + N+LMD+Y KCG+LE+A              C                  +
Sbjct: 295 HGFGSNLKIVNSLMDLYSKCGELETA--------------CG-----------------L 323

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ L  K V+ WN +IGGY      KEAL LF EM  +G +P+ VT +  L AC+ LGA+
Sbjct: 324 FEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAI 383

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I+K  ++      L T+L+DMYAKCG+I  A QVF+ +  ++  ++ A+I 
Sbjct: 384 DIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  A   FS M  +G+ PD+ITF+G+LSAC   G++D GR  F  M+  ++++
Sbjct: 444 GFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKIT 503

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG SGL +EAE++I +M M  D V+W +L  AC++ GNV +GE  A  
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQN 563

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E  K+R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 564 LIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFII 623

Query: 567 RDKSHPELEQIYDCLVQL 584
            DK HP   +IY  L ++
Sbjct: 624 GDKFHPRNREIYGMLEEM 641


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/641 (38%), Positives = 359/641 (56%), Gaps = 66/641 (10%)

Query: 3   ITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +TGLI+  +A SRLI F + S +     Y  +I  +++NPN+F+WN  +R  L       
Sbjct: 28  LTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPH 87

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
              L+ ++      +PD++TYP+L + CA+    F G ++  H +  GFD D+YV N ++
Sbjct: 88  QALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLM 147

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLING--------------------------- 154
           +++  CG +G A  VF+ES V +LVSWN+L+ G                           
Sbjct: 148 NLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNS 207

Query: 155 ----FVRSGFPREAIRLF-------RDM-----------QLERVEPDEVTMIGM------ 186
               F R G   +A R+F       RDM           Q E  E   V  + M      
Sbjct: 208 MIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVA 267

Query: 187 ---------VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
                    +SAC+++ ++ +GR +H    + G+   V L NAL+ +Y  CG++  A  I
Sbjct: 268 VDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRI 327

Query: 238 FDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           FD       ++S  +MI GY + G +  A  +F  +PEK VV W+A+I GY Q +   EA
Sbjct: 328 FDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEA 387

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           LALF EMQ  G++PD    V  +SAC+ L  LD G WIH +I +    +NV+L T L+DM
Sbjct: 388 LALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDM 447

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCG +  AL+VF+ M E+   T+ A+I GLA++G    +++ F++M   G +P+EITF
Sbjct: 448 YMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITF 507

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           +G+L AC H GLV++GR YF  M    ++   +KHY CMVDLLGR+GLL+EAE+LI SMP
Sbjct: 508 MGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMP 567

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           MA DV  WGAL  ACR H +  +GER   KL++L P   G +VLL+N+Y     W    +
Sbjct: 568 MAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLE 627

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +R +M + GV KTPGCS IE NG ++EF+  DK+HP++  I
Sbjct: 628 IRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDI 668


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 353/554 (63%), Gaps = 2/554 (0%)

Query: 3    ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
            ++GL +  +A S+++   AI +  +L +  K+   ++ P +F WN+ IRG  ++    +A
Sbjct: 478  VSGLYNCHYAMSKVLRSYAILQP-DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADA 536

Query: 63   VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            +  YK+  + GG  PDN T+P + K CA +     G ++  H+ KLG   D++V N++IH
Sbjct: 537  IAFYKKA-QGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIH 595

Query: 123  VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
            ++ +CG+L  A +VFDE  V+++VSWNSLI G+ +    ++ + LF+ MQ E V+ D+VT
Sbjct: 596  LYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVT 655

Query: 183  MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
            MI +VSAC +L D ++   +  YI +  + + V L N L+D + + G+L+SAE++F +M 
Sbjct: 656  MIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMK 715

Query: 243  NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
             + +V+   MI  YAK   +  ARKIFD +P+K ++ W+++I GY QA    +AL +F +
Sbjct: 716  VRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQ 775

Query: 303  MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
            MQ   +KPDA+     +S+C+ LGALD G W+H ++ + N   + ++  +L+DMY KCG+
Sbjct: 776  MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGS 835

Query: 363  IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
              +ALQVF EM E+++L++ +II GLA +G   ++++ F  M+  G  P+ +TFLG+L A
Sbjct: 836  AKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIA 895

Query: 423  CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
            C +  LV+EG  +F  M  ++ L P++KHY C+VDLLGR+G LE+A + I  MP+  D V
Sbjct: 896  CANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPV 955

Query: 483  VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
            VW  L  +C  HG+V+I E    KL EL+P +SG Y LL+N Y  ++ W EA  VR+ M 
Sbjct: 956  VWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMA 1015

Query: 543  ERGVEKTPGCSSIE 556
            +  V K+PGCS++E
Sbjct: 1016 DTDVRKSPGCSAVE 1029



 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 258/456 (56%), Gaps = 12/456 (2%)

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
           +A  VFD    R    W++L+  +     P++A++LFR  +    + D       + ACA
Sbjct: 46  IAHQVFD----RRPTPWHALLKAYSHGPHPQDALQLFRHARWHAAD-DTYAFTFALKACA 100

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
            L       ++H  +   G      +  AL+++Y+ CG L  +   F+ M  K  VS   
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           +I G+A +G ++ AR +F+ +P + VV W+ +I GY +A R  EA+ALF  M A GI P 
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            +T +  + A S +G +  G  +H + EKE    +V +G +L+D+YAK G+I  +L+VF 
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFD 280

Query: 372 EMPERNSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
           EM +R +L ++T+II G A+HG ++ A+  F++M   G+ P+ ITFL +L AC HGGLV+
Sbjct: 281 EMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVE 340

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           +G  +F  M   + ++P +KH+ C++D+LGR+G L EAEQ+IR  P+  +  VW  L   
Sbjct: 341 QGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGC 400

Query: 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
           C  +G V +GER   K+L L+ +  G +V+L+NM  +   + +A  VRK++++R   K+ 
Sbjct: 401 CSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKS- 459

Query: 551 GCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
                  N +  E I R  ++  +  +Y+C   +++
Sbjct: 460 -----FFNIVRMEAIKRLHAYYIVSGLYNCHYAMSK 490



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 180/382 (47%), Gaps = 67/382 (17%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           W+  ++ +      ++A+ L++    +     D + +    K CA LG      ++ G V
Sbjct: 58  WHALLKAYSHGPHPQDALQLFRHARWHAAD--DTYAFTFALKACAGLGWPRCCMQLHGLV 115

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF---------- 155
           ++ GF+   YVH A+++V++ CG L  +   F+E  V+N VSWN +I GF          
Sbjct: 116 VRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYAR 175

Query: 156 ---------------------VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
                                 R+  P EA+ LFR M  E + P E+T++ +V A + + 
Sbjct: 176 LLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVG 235

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN-KTVVSCTTMI 253
            + +G  +H Y  + GL   V + N+L+D+Y K G ++++  +FD M++ + +VS T++I
Sbjct: 236 KILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSII 295

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+A  G                                S +A+ LF +M+  GI+P+ +
Sbjct: 296 SGFAMHGL-------------------------------SVKAVELFADMRRAGIRPNRI 324

Query: 314 TTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           T +  L ACS  G ++ G+ +    I + N N +V     ++DM  + G + +A Q+  +
Sbjct: 325 TFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRD 384

Query: 373 MP-ERNSLTYTAIIGGLALHGK 393
            P E N+  +  ++G  + +G+
Sbjct: 385 FPVEVNATVWRTLLGCCSKYGE 406



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 230/516 (44%), Gaps = 30/516 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW   I GF   G   +AV+L+  M R  G RP+  T+  +   C+  GL   G   
Sbjct: 287 NLVSWTSIISGFAMHGLSVKAVELFADM-RRAGIRPNRITFLSVLHACSHGGLVEQGVAF 345

Query: 102 FGHVL-KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-NLVSWNSLINGFVRSG 159
           F  ++ +   + D+     +I +    G L  A  +  +  V  N   W +L+    + G
Sbjct: 346 FKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYG 405

Query: 160 FPREAIRLFRD-MQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
                 R  +  + LER    D V +  M++   +  D  + R++            V  
Sbjct: 406 EVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKL------------VDQ 453

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSC----TTMIVGYAKFGF-LDIARKIFDDL 272
            N++   +    ++E+ + +    +   + +C    + ++  YA     L  A K+FD +
Sbjct: 454 RNSVKSFF-NIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQI 512

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  WN +I G  Q+    +A+A + + Q  G+ PD +T    L AC+++ AL++G 
Sbjct: 513 EAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGE 572

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H  I K     ++ +  +L+ +YA CGN+  A  VF EM  ++ +++ ++I G +   
Sbjct: 573 QMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCN 632

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +  D ++ F  M   G+  D++T + ++SAC   G       Y  +    + +   +   
Sbjct: 633 RFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA-DYMVRYIEDYCIEVDVYLG 691

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           + +VD  GR G L+ AE++  +M +  ++V   A+  A     ++     +A K+ +  P
Sbjct: 692 NTLVDYFGRRGQLQSAEKVFFNMKV-RNIVTMNAMIAAYAKGQDIV----SARKIFDQIP 746

Query: 513 QDSGI-YVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           +   I +  + + Y  +N + +A ++ + M+   V+
Sbjct: 747 KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVK 782



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 201/452 (44%), Gaps = 18/452 (3%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW+  I G+    +  EAV L+++M+   G  P   T   +    +++G   +G  +
Sbjct: 185 NVVSWSGMIDGYTRACRPVEAVALFRRMMAE-GISPSEITVLAVVPALSNVGKILIGEAL 243

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VRNLVSWNSLINGFVRSGF 160
            G+  K G   D+ V N++I ++   G +  +  VFDE    RNLVSW S+I+GF   G 
Sbjct: 244 HGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGL 303

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLAN 219
             +A+ LF DM+   + P+ +T + ++ AC+    +  G       I E  +   V    
Sbjct: 304 SVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFG 363

Query: 220 ALMDMYVKCGKLESAEEI---FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
            ++DM  + G+L  AE+I   F   VN TV    T++   +K+G +++  +      +K 
Sbjct: 364 CIIDMLGRAGRLREAEQIIRDFPVEVNATV--WRTLLGCCSKYGEVEMGERTM----KKI 417

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           +       G +V        L  F + +      D   +V       ++ A+     +H 
Sbjct: 418 LALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKR---LHA 474

Query: 337 -FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +I    +N +  +   L        ++  A +VF ++    +  +  +I GLA      
Sbjct: 475 YYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPA 534

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           DAI+++ +  G G++PD +TF  IL AC     ++EG +    ++ +  LS      S +
Sbjct: 535 DAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNS-L 593

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + L    G L  A  +   M +  DVV W +L
Sbjct: 594 IHLYAACGNLCYARSVFDEM-VVKDVVSWNSL 624


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/612 (38%), Positives = 353/612 (57%), Gaps = 66/612 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+LI FC +S     L Y   +   +Q PN   WN   RG   +   
Sbjct: 10  MIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDP 69

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+ +T+P L K CA       G +I GHVLKLG+D+D+YVH +
Sbjct: 70  VSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 128

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I ++V  G L  A  VFD+S                                ++++VSW
Sbjct: 129 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSW 188

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF++M    V PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 189 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 248

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y+KCG++E+A              C                  +
Sbjct: 249 HGFGSNLKIVNALIDLYIKCGEVETA--------------CG-----------------L 277

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ L  K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+
Sbjct: 278 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 337

Query: 329 DDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           + G WIH +I K    +       T+L+DMYAKCG+I  A QVF  +  R+  ++ A+I 
Sbjct: 338 EIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIF 397

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  A   FS M    + PD+ITF+G+LSAC H G++D GR  F  M   ++++
Sbjct: 398 GFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKIT 457

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG SGL +EAE++I +M M  D V+W +L  AC++HGNV +GE  A  
Sbjct: 458 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQN 517

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E  K+R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 518 LIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFII 577

Query: 567 RDKSHPELEQIY 578
            DK HP   +IY
Sbjct: 578 GDKFHPRNREIY 589


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/593 (39%), Positives = 359/593 (60%), Gaps = 11/593 (1%)

Query: 6   LISHG------FAPSRLIAFCAISESKN---LDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           L++HG        P  + ++CA+S       L +  ++   V +P+ F++N  IR +  +
Sbjct: 26  LLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNS 85

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G  +EA+ L++ +LR G   P+ FT P + K C+            G  +KLG+   ++V
Sbjct: 86  GCPQEALCLHRDVLRRG-ILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFV 144

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
            NA++H   S G L  +  +F E    RN+VSWN++I G  ++G   EA  LFR+M+ + 
Sbjct: 145 GNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQG 204

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V  D  T + ++  C++  +L +GR +H ++  SG  + + L NAL+DMY KCG L  A 
Sbjct: 205 VLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAH 264

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
             FD M  K VVS T+M+   AK G +D AR  F+ +PE+ ++ WNA+I  YVQ  R  E
Sbjct: 265 RCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPE 324

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
            L L++ M++ G+ PD VT    LS   Q G L  G  IH +I+    +  V +  +L+D
Sbjct: 325 TLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLID 384

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MYA+CG +  ++ +F EMP +N++++  IIG LA+HG+A +A+ +F  M+     PDEIT
Sbjct: 385 MYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEIT 444

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+LSAC HGGL+++G+ YF  M  I+ + P+++HY+CMVDLLGR G L +A  LI+ M
Sbjct: 445 FVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDM 504

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM  DVVVWGAL  ACR+HG+V IG+ A  +LLEL+  + G++VL++N+  ++  WE+  
Sbjct: 505 PMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMK 564

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           ++RK+M +RG +K  G SSIE+N  ++EF V D  H    QIY  + QL  H 
Sbjct: 565 RLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRHESSSQIYAAVDQLAYHL 617


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/586 (40%), Positives = 345/586 (58%), Gaps = 38/586 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +  +GL  H F  S L+     S +K+L Y   +   +  P  F WN  +R F  + + +
Sbjct: 31  LITSGLAHHTFFLSDLLR----SATKDLGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQ 86

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             +  Y + LRN G  PD  T+PLL K  + L      ++ + H++K G D D +V N++
Sbjct: 87  MVLVAYSR-LRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHIVKFGLDFDAFVQNSL 144

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           +  F  CG +  +  +F E+  +++VSW +LING +R+G   EA+  F +M+   VE DE
Sbjct: 145 VSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDE 204

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTL-TVPLANALMDMYVKCGKLESAEEIFD 239
           VT++ ++ A A L D+  GR +H +  ESG  +  V + +AL+DMY KCG          
Sbjct: 205 VTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCG---------- 254

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                + D A K+F+++P + +V W A+I GYVQ  R KEAL +
Sbjct: 255 ---------------------YCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKV 293

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F EM   GI+P+  T    L+AC+QLG+LD G W+H ++++    LN  LGTALVDMY+K
Sbjct: 294 FQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSK 353

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG + +AL VF ++P ++   +TA+I GLA+ G AL +++ FS+MI   + P+ +TFLG+
Sbjct: 354 CGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGV 413

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSAC HGGLVDEG + F  M   +RL P + HY CMVDLLGR+G LEEA + I SMPM  
Sbjct: 414 LSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEP 473

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VWGALF  C +H    +GE     L++L P  SG Y+LLAN+Y     WE A  VR+
Sbjct: 474 TPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRR 533

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           +M+ +GV+K+P CS IEVNG+++EFI  DKSH E   +Y  L  +T
Sbjct: 534 LMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESINVYMMLGSVT 579


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 340/538 (63%), Gaps = 38/538 (7%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLRFLGYEI 101
           +  +N  I  +  +   + A  +Y +++ NG   PD +T+P++ K C   LG++  G ++
Sbjct: 70  TLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFV-PDMYTFPVVLKACTKFLGVQ-EGEQV 127

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G  +K+GF  D+YV N+++H +  CG  G A  VFDE  VR++VSW  LI+G+VR+G  
Sbjct: 128 HGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLF 187

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EAI LF  M    V P+  T + ++ AC ++  L++G+ +H  + +    + + + NAL
Sbjct: 188 DEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNAL 244

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMYVKC  L                 C               ARK+FD+LP++ +V W 
Sbjct: 245 VDMYVKCECL-----------------CE--------------ARKLFDELPDRDIVSWT 273

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           +II G VQ K+ K++L LF++MQ +G++PD +     LSAC+ LGALD G W+  +IE++
Sbjct: 274 SIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ 333

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               ++ +GTALVDMYAKCG I  AL +F+ +P RN  T+ A++GGLA+HG   +A+ +F
Sbjct: 334 GIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHF 393

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLG 460
             MIG G+ P+E+TFL IL+ACCH GLV EGR YF QM S  F  SP+L+HY CM+DLL 
Sbjct: 394 ELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLC 453

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+GLL+EA + IR+MP+  DV++WGAL  AC+ +GNV + +     LLEL  QDSG+YVL
Sbjct: 454 RAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVL 513

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           L+N+Y  +  W++  +VR++M+++G+ K PG S IEV+G  +EF+V D +H   E I+
Sbjct: 514 LSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIH 571



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 127/276 (46%), Gaps = 17/276 (6%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-----GFLDIARKIFDDLPEK 275
           L++   +C  + S ++I   ++   ++    ++   ++F     GF+D A   FD L + 
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYA---FDFLNQT 64

Query: 276 YV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
            +    +P+N +I  Y  +   K A  ++  +   G  PD  T    L AC++   + +G
Sbjct: 65  DLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEG 124

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             +H    K  F  ++ +  +L+  Y+ CG    A +VF EM  R+ +++T +I G    
Sbjct: 125 EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRT 184

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G   +AI+ F +M    ++P+  TF+ +L AC   G +  G+     +         L  
Sbjct: 185 GLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYK-RAFGIGLVV 240

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + +VD+  +   L EA +L   +P   D+V W ++
Sbjct: 241 GNALVDMYVKCECLCEARKLFDELP-DRDIVSWTSI 275


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/593 (39%), Positives = 359/593 (60%), Gaps = 12/593 (2%)

Query: 6   LISHGFA-----PSRLIA-FCAISESKN---LDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           L+ HGF+      S+LIA +C +S       L +  ++   +  P+ F +N  +R +  +
Sbjct: 33  LVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNS 92

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
              +EA+ L++ +L+ G   P+ FT P + K C ++          G V+KLGF   ++V
Sbjct: 93  DCPQEALRLHRGVLQRG-ILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFV 151

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            NA++H   S G L  +   F E   RN+VSWN++I G+ ++G   EA  LF +M+ + +
Sbjct: 152 ANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGL 211

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
             D  T++ ++ AC+   +L +GR +H ++  SG  +   L NAL+DMY KCG L  A  
Sbjct: 212 LADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHR 271

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
            FD M  K VV+ T+M+   AK G +D  R  F+ +PE+ +V WNA+I  YVQ  R  E 
Sbjct: 272 CFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHET 331

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVD 355
           L L++ M++ GI PD  T    LSAC Q G L  G  IH ++ ++NFN   V L  +L+D
Sbjct: 332 LDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYV-RDNFNDPGVTLLNSLLD 390

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MYA+CG +  A+ +F EMP +N +++  IIG LA+HG+A + +++F  M+     PDEIT
Sbjct: 391 MYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEIT 450

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+LSAC HGGL++ G  YF  M+ ++ + P+++HY CMVDLLGR G L +A  LI+ M
Sbjct: 451 FVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDM 510

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
            +  DVVVWGAL  ACR+HGNV IG+    +LLEL+    G++VL+ N++ ++N WE+  
Sbjct: 511 SIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMK 570

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           K+RK+M+E+G +K  G SSIEV  +++EF V D  H    +IY  + QL+ H 
Sbjct: 571 KLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVEDLRHESTNEIYAAVDQLSYHL 623


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/546 (40%), Positives = 346/546 (63%), Gaps = 2/546 (0%)

Query: 1    MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
            + ++GL +  +A S++I   A+ +S +L    K+   +++P +F WN  +RG  ++   +
Sbjct: 864  LVVSGLHNCQYAMSKVIRLYALHQS-DLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPK 922

Query: 61   EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            +A+  YK+  +  G +PDN T+P + K CA       G ++  HV+KLGF +D++V N++
Sbjct: 923  DAIVFYKKA-QEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSL 981

Query: 121  IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
            I+++ +CG L  A +VF+E  V+++VSWNSLI G+ +    +E + LF+ MQ E V+ D+
Sbjct: 982  IYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADK 1041

Query: 181  VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            VTM+ ++SAC  L D ++   +  YI  + + + V L N L+D Y + G+L+SAE++F  
Sbjct: 1042 VTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQ 1101

Query: 241  MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
            M +K  V+   MI  YAK G L  A+KIFD +P K ++ W+++I  Y QA    ++L LF
Sbjct: 1102 MKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 1161

Query: 301  HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
             +MQ   +KPDAV     LSAC+ LGALD G WIH ++ + N   + ++  +L+DM+AKC
Sbjct: 1162 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKC 1221

Query: 361  GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
            G + +ALQVF +M E+++L++ +II GLA +G   +A+  F  M+  G  P+E+TFLG+L
Sbjct: 1222 GCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVL 1281

Query: 421  SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
             AC +  LV+EG  +F +M S+  L P++KHY C+VD+L R+G LE+A   I  MP+A D
Sbjct: 1282 IACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPD 1341

Query: 481  VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             VVW  L  ACR HGNV++ E A  KL ELDP +S   +LL+N+Y  ++ W +A  VR+ 
Sbjct: 1342 PVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRRW 1401

Query: 541  MEERGV 546
              +  V
Sbjct: 1402 TADNAV 1407



 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 243/417 (58%), Gaps = 6/417 (1%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD+S       W + +  +    FP EA+ LF+  + + +  D      ++ ACA 
Sbjct: 437 ALKVFDQSPA----PWRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAG 491

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L     G ++H  + + G      +  AL+++YV    L  A ++FD M  K VVS   M
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I G+A +G ++ AR +FD +P + VV W  +I GY +A    EAL L   M A GI P  
Sbjct: 552 ITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSE 611

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           +T +  + A S LG +  G  ++ + EK+    +  +G +L+D+YAK G++  +L+VF E
Sbjct: 612 ITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDE 671

Query: 373 MPERNSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           M +R +L ++T+II G A+HG +++A+  F+EM   G+ P+ ITFL +++AC HGGLV++
Sbjct: 672 MLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQ 731

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G  +F  M   + + P++KH+ C++D+LGR+G L EAEQ+I  +PM  +V VW  L   C
Sbjct: 732 GLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCC 791

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
             +G V++GERA   + +L+ +  G + +L+N+  +   + +A + RK++++R + K
Sbjct: 792 SKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 211/488 (43%), Gaps = 77/488 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL     + S      A + S      T +    Q+P    W   ++ +       EA+
Sbjct: 408 SGLRHQALSYSSTAPVPATARSSTPPSRTALKVFDQSPAP--WRAFLKAYSHGPFPLEAL 465

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+K   ++     D F +  + K CA LG    G ++   V++ GF+   YVH A+I+V
Sbjct: 466 HLFKHARQHLAD--DTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINV 523

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWN-------------------------------SLI 152
           +V    L  A  VFDE  V+N+VSWN                                LI
Sbjct: 524 YVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLI 583

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+ R+    EA+ L R M    + P E+T++ ++ A + L  + +G  ++ Y  + G+ 
Sbjct: 584 DGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIM 643

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVN-KTVVSCTTMIVGYAKFGFLDIARKIFDD 271
               + N+L+D+Y K G ++++ ++FD M++ + +VS T++I G+A  G           
Sbjct: 644 SDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGL---------- 693

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                                S EAL LF EM+  GIKP+ +T +  ++ACS  G ++ G
Sbjct: 694 ---------------------SVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQG 732

Query: 332 I-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII----- 385
           + +    + + N +  +     ++DM  + G + +A Q+   +P   ++T   I+     
Sbjct: 733 LAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCS 792

Query: 386 --GGLALHGKALDAISYFSEMIG--VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
             G +A+  +A+  IS      G    ++ + +T LG  S       + + RK      +
Sbjct: 793 KYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEA 852

Query: 442 IFRLSPKL 449
           +     KL
Sbjct: 853 VMEAVKKL 860



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 118/518 (22%), Positives = 216/518 (41%), Gaps = 67/518 (12%)

Query: 25   SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM--------------- 69
            S+ L    K+   +   N  SWNV I GF   G++  A  L+ QM               
Sbjct: 527  SRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGY 586

Query: 70   ------------LRN---GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
                        LR+   GG  P   T   +    ++LG   +G  + G+  K G   D 
Sbjct: 587  TRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDA 646

Query: 115  YVHNAVIHVFVSCGDLGLACNVFDESC-VRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
             V N++I ++   G +  +  VFDE    RNLVSW S+I+GF   G   EA+ LF +M+ 
Sbjct: 647  RVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 706

Query: 174  ERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              ++P+ +T + +++AC+    +  G       + E  +   +     ++DM  + G+L 
Sbjct: 707  AGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLC 766

Query: 233  SAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARKIFDDLPEK----YVVPWNAI- 283
             AE+I + +  +  V+   +++G    Y +    + A K+  DL  +    + V  N + 
Sbjct: 767  EAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLT 826

Query: 284  -IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
             +G +  A+++++ L     ++      +AV  +H     S L                 
Sbjct: 827  ELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGL----------------- 869

Query: 343  FNLNVVLGTALVDMYA-KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             N    + + ++ +YA    ++  A +VF ++    +  +  ++ GLA      DAI ++
Sbjct: 870  HNCQYAM-SKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFY 928

Query: 402  SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLL 459
             +    G+ PD +TF  +L AC       EG +     + + +L   L  +  + ++ L 
Sbjct: 929  KKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMH---NHVIKLGFLLDIFVSNSLIYLY 985

Query: 460  GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
               G L  A  +   M +  DVV W +L      H  +
Sbjct: 986  AACGALACARSVFNEM-LVKDVVSWNSLIGGYSQHNRL 1022


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 353/614 (57%), Gaps = 66/614 (10%)

Query: 5   GLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           GL +  +A S+L+ FC ++     L Y   +  ++Q PN  SWN  IRG   +     A+
Sbjct: 4   GLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISAL 63

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           +LY  M+ + G  P+++T+P LFK CA       G +I   +LK G  VD++VH ++I +
Sbjct: 64  NLYVYMI-SLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISM 122

Query: 124 FV-------------------------------SCGDLGLACNVFDESCVRNLVSWNSLI 152
           +                                S G++  A  +FDE  ++++VSWN++I
Sbjct: 123 YAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMI 182

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+   G  +EA+ LF +M    V+PDE TM  ++S C    ++ LGR+IH +I   G  
Sbjct: 183 SGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFG 242

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L NAL+D+Y KCG++E A                                 +F+ L
Sbjct: 243 SNLKLVNALIDLYSKCGEMERA-------------------------------HGLFEGL 271

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K V+ WN +IGGY      KEAL +F EM   G  P+ VT +  L AC+ LGA+D G 
Sbjct: 272 QYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGR 331

Query: 333 WIHRFIEKE--NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           WIH +I+K+      N  L T+L+DMYAKCGNI  A QVF  +  ++  +  A+I G A+
Sbjct: 332 WIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAM 391

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG+A  A    S M   G+ PD+ITF+G+LSAC H GL D GRK F  M+  +R+ PKL+
Sbjct: 392 HGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLE 451

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CM+DLLGRSGL +EAE+LI SM M  D V+WG+L  AC++H N+ +GE  A KL+++
Sbjct: 452 HYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKI 511

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +P++ G YVLL+N+Y  S  W++  +VR ++ ++G++K PGCSSIE++ +++EF++ DK 
Sbjct: 512 EPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKF 571

Query: 571 HPELEQIYDCLVQL 584
           HP+ ++IY  L ++
Sbjct: 572 HPQNKEIYKMLEEI 585


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/573 (40%), Positives = 352/573 (61%), Gaps = 3/573 (0%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  + LI F A  E   +D   K+   +   N  SW   I G+      +EAV 
Sbjct: 160 GLEGDIFVSNSLIHFYA--ECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ QM    G  P+  T   +   CA L    LG ++  ++ +LG ++   + NA++ ++
Sbjct: 218 LFFQM-GEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMY 276

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
           + CGD+  A  +FDE   +NLV +N++++ +V   +  + + +  +M  +   PD+VTM+
Sbjct: 277 MKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTML 336

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
             ++ACAQL DL++G+  H Y+  +GL     ++NA++DMY+KCGK E+A ++F+ M NK
Sbjct: 337 STIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK 396

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
           TVV+  ++I G  + G +++A +IFD++ E+ +V WN +IG  VQ    +EA+ LF EMQ
Sbjct: 397 TVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQ 456

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             GI  D VT V   SAC  LGALD   W+  +IEK + ++++ LGTALVDM+++CG+ +
Sbjct: 457 NQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPS 516

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A+ VF  M +R+   +TA IG +A+ G    AI  F+EM+   + PD++ F+ +L+AC 
Sbjct: 517 SAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACS 576

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           HGG VD+GR+ F  M     + P + HY CMVDLLGR+GLLEEA  LI+SMP+  + VVW
Sbjct: 577 HGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVW 636

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           G+L  ACR H NV +   AA KL +L P+  GI+VLL+N+Y  +  W +  +VR  M+E+
Sbjct: 637 GSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEK 696

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           GV+K PG SSIEV GL++EF   D+SH E   I
Sbjct: 697 GVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729



 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 255/534 (47%), Gaps = 72/534 (13%)

Query: 1   MTITGLISHGFAPS--RLIAFCA-ISESKNLDYCTKILFNVQNPNS---FSWNVAIRGFL 54
           M   GL+ H  A +  +LIA    I   ++LDY  +  F   + N    F +N  IRG+ 
Sbjct: 48  MMKKGLLCHKPASNLNKLIASSVQIGTLESLDY-ARNAFGDDDGNMASLFMYNCLIRGYA 106

Query: 55  ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
             G   +A+ LY QML  G   PD +T+P L   C+ +     G ++ G VLK+G + D+
Sbjct: 107 SAGLGDQAILLYVQMLVMG-IVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDI 165

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           +V N++IH +  CG + L   +FD    RN+VSW SLING+      +EA+ LF  M   
Sbjct: 166 FVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEA 225

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            VEP+ VTM+ ++SACA+L+DL LG+++  YISE G+ L+  + NAL+DMY+KCG + +A
Sbjct: 226 GVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAA 285

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            +IFD   NK +V                                +N I+  YV  + + 
Sbjct: 286 RQIFDECANKNLVM-------------------------------YNTIMSNYVHHEWAS 314

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           + L +  EM   G +PD VT +  ++AC+QLG L  G   H ++ +        +  A++
Sbjct: 315 DVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAII 374

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK--------------------- 393
           DMY KCG    A +VF  MP +  +T+ ++I GL   G                      
Sbjct: 375 DMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNT 434

Query: 394 ---AL-------DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
              AL       +AI  F EM   G+  D +T +GI SAC + G +D   K+        
Sbjct: 435 MIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA-KWVCTYIEKN 493

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            +   L+  + +VD+  R G    A  + + M    DV  W A      + GN 
Sbjct: 494 DIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMAMEGNT 546



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 134/265 (50%), Gaps = 14/265 (5%)

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVV------SCTTMIVGYAKFGFL---DIARKIF 269
           N+   + V C  L+  +++   M+ K ++      +   +I    + G L   D AR  F
Sbjct: 26  NSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAF 85

Query: 270 --DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
             DD     +  +N +I GY  A    +A+ L+ +M   GI PD  T    LSACS++ A
Sbjct: 86  GDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILA 145

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L +G+ +H  + K     ++ +  +L+  YA+CG +    ++F  M ERN +++T++I G
Sbjct: 146 LSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLING 205

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLS 446
            +    + +A+S F +M   G+ P+ +T + ++SAC     ++ G+K  + +S +   LS
Sbjct: 206 YSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELS 265

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQL 471
             +   + +VD+  + G +  A Q+
Sbjct: 266 TIM--VNALVDMYMKCGDICAARQI 288


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/577 (41%), Positives = 339/577 (58%), Gaps = 64/577 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL +  FA S+LI FCAIS   NL Y   +  +++ PN F WN  IRG   +     A+
Sbjct: 58  TGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAI 117

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           D Y +ML   G  P+++T+P L K CA +G    G +I GHVLKLG + D +VH ++I++
Sbjct: 118 DFYVRMLL-CGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINM 176

Query: 124 FVSCGDLGLACNVFDESC-------------------------------VRNLVSWNSLI 152
           +   G+LG A  VF +S                                VR+ VSWN++I
Sbjct: 177 YAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMI 236

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ +SG   EA+  F++M+   V P+E TM+ ++SACAQ   L LG  +  +I + GL 
Sbjct: 237 AGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLG 296

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L NAL+DMY KCG L                               D AR +F+ +
Sbjct: 297 SNLRLVNALIDMYSKCGDL-------------------------------DKARDLFEGI 325

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            EK ++ WN +IGGY      KEALALF +MQ + ++P+ VT V  L AC+ LGALD G 
Sbjct: 326 CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGK 385

Query: 333 WIHRFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
           WIH +I+K+   L N  L T+L+DMYAKCGNI  A QVF  M  ++  ++ A+I GLA+H
Sbjct: 386 WIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMH 445

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G A  A+  F +M   G  PD+ITF+G+LSAC H GLV+ GR+ F+ M   + +SPKL+H
Sbjct: 446 GHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQH 505

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y CM+DLLGR+GL +EAE L+++M M  D  +WG+L  ACR+HGNV +GE AA  L EL+
Sbjct: 506 YGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELE 565

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
           P++ G YVLL+N+Y  +  W++  ++R  + ++G++K
Sbjct: 566 PENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 352/612 (57%), Gaps = 66/612 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+LI FC +S     L Y   +   +Q PN   WN   RG   +   
Sbjct: 25  MIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDP 84

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+ +T+P L K CA       G +I GHVLKLG+D+D+YVH +
Sbjct: 85  VSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 143

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I ++V  G L  A  VFD+S                                ++++VSW
Sbjct: 144 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSW 203

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF++M    V PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 204 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 263

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y+KCG++E+A              C                  +
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETA--------------CG-----------------L 292

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ L  K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 352

Query: 329 DDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           + G WIH +I K    +       T+L+DMYAKCG+I  A QVF  +  R+  ++ A+I 
Sbjct: 353 EIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIF 412

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  A   FS M    + PD+ITF+G+LSAC H G++D GR  F  M   ++++
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKIT 472

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG SGL +EAE++I +M M  D V+W +L  AC+++ NV +GE  A  
Sbjct: 473 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQN 532

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E  K+R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 533 LIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFII 592

Query: 567 RDKSHPELEQIY 578
            DK HP   +IY
Sbjct: 593 GDKFHPRNREIY 604


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/612 (38%), Positives = 349/612 (57%), Gaps = 66/612 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+L+  C +S     L Y   +   +Q P    WN   RG   +   
Sbjct: 25  MIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDP 84

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+++T+P L K CA       G ++ G VLK GFD+D+Y+H +
Sbjct: 85  VSALKLYVCMV-SLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTS 143

Query: 120 VIHVFVSCGDLGLACNV-------------------------------FDESCVRNLVSW 148
           +I ++V  G L  A  V                               FDE  V+++VSW
Sbjct: 144 LISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSW 203

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N+ I+G+  +G  +EA+ LF+ M    V PDE TM+ ++SACAQ   + LGR++H +I++
Sbjct: 204 NAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWIND 263

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y KCG+LE+A              C                  +
Sbjct: 264 HGFGXNLKIVNALIDLYSKCGELETA--------------CG-----------------L 292

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F  L  K V+ WN +IGGY      KEAL LF +M  +G KP+ VT +  LSAC+ LGA+
Sbjct: 293 FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAI 352

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I+K  +       L T+L+DMYAKCG+I  A QVF  M  R+  ++ A+I 
Sbjct: 353 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  A   FS M   G+ PD+ITF+G+LSAC H G++D GR  F  M+  ++L 
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLM 472

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DL G SGL +EAE++I +M M  D V+W +L  AC++HGNV +GE  A  
Sbjct: 473 PKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQN 532

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E  K R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 533 LIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 592

Query: 567 RDKSHPELEQIY 578
            DK HP   +IY
Sbjct: 593 GDKFHPRNREIY 604


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/585 (37%), Positives = 353/585 (60%), Gaps = 32/585 (5%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG I H  + ++LIA      S  + Y   +  + +  +  +WN  +R F+ +   R
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+  Y +ML      PD FT+P L K CA L    +G  + G V+K     D+Y+   +
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           ++++ +CGDL  A  +F+    RN V W S+I+G++++  P EA+ L++ M+ +   PDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM  +VSACA+L+DL +G ++H +I E  + +   L +AL++MY KCG L++       
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT------- 233

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                   AR++FD L +K V  W+A+I GYV+  RS EAL LF
Sbjct: 234 ------------------------ARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 301 HEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
            E+   + ++P+ VT +  +SAC+QLG L+ G W+H +I +     +V L  +L+DM++K
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I  A ++F  M  ++ +++ +++ GLALHG   +A++ F  M    L PDEITF+G+
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGV 389

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GLV EG+K F ++ +++ +  K +HY CMVDLL R+GLL EA + IR MP+  
Sbjct: 390 LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQP 449

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D  +WG++  ACR++ N+ +GE AA  LLEL+P + G+Y+LL+N+Y    MW E  KVR+
Sbjct: 450 DGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRE 509

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +M E+G++KTPGCSS+ ++ + + F+  D SHPE+ +I   L Q+
Sbjct: 510 LMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQV 554


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/558 (41%), Positives = 335/558 (60%), Gaps = 33/558 (5%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y T +     +PN F +N  IRG +     R+AV +Y  M R  G  PDNFT+P + K C
Sbjct: 53  YATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASM-RQHGFAPDNFTFPFVLKAC 111

Query: 90  ASLGLRF-LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
             L   F +G  +   V+K GFD D++V   ++ ++   G L  A  VFDE   +N+VSW
Sbjct: 112 TRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSW 171

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
            ++I G++ SG   EA+ LFR +    + PD  T++ ++ AC+++ DL  GR I  Y+ E
Sbjct: 172 TAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRE 231

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           SG    V +A +L+DMY KCG +E                                AR++
Sbjct: 232 SGSVGNVFVATSLVDMYAKCGSMEE-------------------------------ARRV 260

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD + EK VV W+A+I GY      KEAL +F EMQ   ++PD    V   SACS+LGAL
Sbjct: 261 FDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGAL 320

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G W    ++ + F  N VLGTAL+D YAKCG++A+A +VF  M  ++ + + A+I GL
Sbjct: 321 ELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGL 380

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A+ G    A   F +M+ VG+ PD  TF+G+L  C H GLVD+G +YF+ MSS+F ++P 
Sbjct: 381 AMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPT 440

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY CMVDL  R+GLL EA+ LIRSMPM A+ +VWGAL   CRLH +  + E    +L+
Sbjct: 441 IEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLI 500

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           EL+P +SG YVLL+N+Y  S+ W+EA K+R  + ++G++K PGCS +EV+G+++EF+V D
Sbjct: 501 ELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGD 560

Query: 569 KSHPELEQIYDCLVQLTR 586
            SHP   +IY+ L  L +
Sbjct: 561 TSHPLSHKIYEKLESLFK 578



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 177/377 (46%), Gaps = 40/377 (10%)

Query: 20  CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN 79
           C  S++  L    K+   +   N  SW   I G++E+G   EA+ L++ +L   G RPD+
Sbjct: 145 CLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEM-GLRPDS 203

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
           FT   +   C+ +G    G  I G++ + G   +++V  +++ ++  CG +  A  VFD 
Sbjct: 204 FTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDG 263

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              +++V W++LI G+  +G P+EA+ +F +MQ E V PD   M+G+ SAC++L  L LG
Sbjct: 264 MVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG 323

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
                 +          L  AL+D Y KCG +  A+E+F  M  K  V            
Sbjct: 324 NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVV----------- 372

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
                               +NA+I G         A  +F +M   G++PD  T V  L
Sbjct: 373 --------------------FNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLL 412

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP- 374
             C+  G +DDG   HR+    +   +V         +VD+ A+ G + +A  +   MP 
Sbjct: 413 CGCTHAGLVDDG---HRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPM 469

Query: 375 ERNSLTYTAIIGGLALH 391
           E NS+ + A++GG  LH
Sbjct: 470 EANSIVWGALLGGCRLH 486



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 205/435 (47%), Gaps = 38/435 (8%)

Query: 86  FKVCASLGLRFLGYEIFGH--VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            K C + GL+ L      H  +L+LG   D Y+ N ++   +       A  VF ++   
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHP 64

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREI 202
           N+  +N+LI G V +   R+A+ ++  M+     PD  T   ++ AC +L    ++G  +
Sbjct: 65  NIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSL 124

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  + ++G    V +   L+ +Y K G L  A ++FD +  K VVS T +I GY + G  
Sbjct: 125 HSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCF 184

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                           EAL LF  +   G++PD+ T V  L AC
Sbjct: 185 G-------------------------------EALGLFRGLLEMGLRPDSFTLVRILYAC 213

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           S++G L  G WI  ++ +     NV + T+LVDMYAKCG++ +A +VF  M E++ + ++
Sbjct: 214 SRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWS 273

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I G A +G   +A+  F EM    + PD    +G+ SAC   G ++ G      M   
Sbjct: 274 ALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGD 333

Query: 443 -FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            F  +P L   + ++D   + G + +A+++ + M    D VV+ A+     + G+V    
Sbjct: 334 EFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGM-RRKDCVVFNAVISGLAMCGHVGAAF 390

Query: 502 RAAMKLLELDPQDSG 516
               +++++  Q  G
Sbjct: 391 GVFGQMVKVGMQPDG 405


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/599 (38%), Positives = 350/599 (58%), Gaps = 66/599 (11%)

Query: 14  SRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN 72
           S+L+ FC +S       Y   +   +Q PN   WN  +RG+  +     A+ LY  M+ +
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI-S 59

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV------- 125
            G  P+++T+P L K CA       G +I GHVLKLG++ D+YVH ++I ++        
Sbjct: 60  LGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLED 119

Query: 126 ------------------------SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
                                   S G++  A  +FDE  V+++VSWN++I+G+  +G  
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EA+ LF++M    V PDE TM+ ++SACAQ   + LGR++H +I + G    + + NAL
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNAL 239

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +D+Y KCG++E+A  +F+ +      SC                         K VV WN
Sbjct: 240 IDLYSKCGQVETACGLFEGL------SC-------------------------KDVVSWN 268

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            +IGGY      KEAL LF EM  +G  P+ VT V  L AC+ LGA+D G WIH +I+K+
Sbjct: 269 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKK 328

Query: 342 NFNLNVV--LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
             ++     L T+L+DMYAKCG+I  A QVF+ M  ++  ++ A+I G A+HG+A     
Sbjct: 329 LKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFD 388

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            FS M   G+ PD+ITF+G+LSAC H G +D GR  F  M+  + ++PKL+HY CM+DLL
Sbjct: 389 LFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLL 448

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
           G SGL +EA+++I++MPM  D V+W +L  ACR HGN+ + E  A  L++++P++ G YV
Sbjct: 449 GHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYV 508

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           LL+N+Y  +  W+E  KVR ++  +G++K PGCSSIE++  ++EFIV DK HP   +IY
Sbjct: 509 LLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIY 567



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 199/405 (49%), Gaps = 38/405 (9%)

Query: 8   SHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           SH    S        + S N+    ++   +   +  SWN  I G+ ETG  +EA++L+K
Sbjct: 128 SHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFK 187

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           +M++    RPD  T   +   CA      LG ++   +   GF  ++ + NA+I ++  C
Sbjct: 188 EMMKT-NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC 246

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G +  AC +F+    +++VSWN+LI G+      +EA+ LF++M      P++VT++ ++
Sbjct: 247 GQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306

Query: 188 SACAQLEDLNLGREIHWYISE--SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
            ACA L  +++GR IH YI +    +T    L  +L+DMY KCG +E+A ++F+SM++K+
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 366

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           + S   MI G+A  G                               R+     LF  M+ 
Sbjct: 367 LSSWNAMIFGFAMHG-------------------------------RANAGFDLFSRMRK 395

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNI 363
            GI+PD +T V  LSACS  G LD G  I + +  +++++   L     ++D+    G  
Sbjct: 396 NGIEPDDITFVGLLSACSHSGKLDLGRHIFKSM-TQDYDITPKLEHYGCMIDLLGHSGLF 454

Query: 364 AKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
            +A ++   MP E + + + +++     HG    A S+   ++ V
Sbjct: 455 KEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKV 499


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 331/555 (59%), Gaps = 32/555 (5%)

Query: 31  CTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           C ++   + N +  +WN  I G  E G   EA ++Y QM R G   P+  TY +L   C 
Sbjct: 399 CRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREG-MMPNKITYVILLNACV 457

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
           +      G EI   V+K GF  D+ V NA+I ++  CG +  A  +F++   ++++SW +
Sbjct: 458 NPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTA 517

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G  +SG   EA+ +F+DMQ   ++P+ VT   +++AC+    L+ GR IH  + E+G
Sbjct: 518 MIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAG 577

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L     +AN L++MY  CG ++ A                               R++FD
Sbjct: 578 LATDAHVANTLVNMYSMCGSVKDA-------------------------------RQVFD 606

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            + ++ +V +NA+IGGY      KEAL LF  +Q  G+KPD VT ++ L+AC+  G+L+ 
Sbjct: 607 RMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEW 666

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              IH  + K+ +  +  LG ALV  YAKCG+ + AL VF +M +RN +++ AIIGG A 
Sbjct: 667 AKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQ 726

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG+  D +  F  M   G+ PD +TF+ +LSAC H GL++EGR+YF  MS  F ++P ++
Sbjct: 727 HGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIE 786

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CMVDLLGR+G L+E E LI++MP  A+  +WGAL  ACR+HGNV + ERAA   L+L
Sbjct: 787 HYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKL 846

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           DP ++ +YV L++MY  + MW+ A K+RK+ME+RGV K PG S IEV   L+ F+  D+S
Sbjct: 847 DPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRS 906

Query: 571 HPELEQIYDCLVQLT 585
           HPE E+IY  L +LT
Sbjct: 907 HPESEKIYAELDKLT 921



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 236/486 (48%), Gaps = 44/486 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   ++  +  SW + I G+ + G    A +++++M + G   P+  TY  +    +  
Sbjct: 300 EVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG-VVPNRITYINVLNAFSGP 358

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  +  H+L  G + D+ V  A++ ++  CG       VF++   R+L++WN++I
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G    G   EA  ++  MQ E + P+++T + +++AC     L+ GREIH  + + G  
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM 478

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + + NAL+ MY +CG ++ A  +F+ MV K ++S T MI G AK G            
Sbjct: 479 FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL----------- 527

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EALA+F +MQ  G+KP+ VT    L+ACS   ALD G 
Sbjct: 528 --------------------GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGR 567

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH+ + +     +  +   LV+MY+ CG++  A QVF  M +R+ + Y A+IGG A H 
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHN 627

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  F  +   GL PD++T++ +L+AC + G ++    +  ++ S+      L   
Sbjct: 628 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLE----WAKEIHSLVLKDGYLSDT 683

Query: 453 S---CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN----VSIGERAAM 505
           S    +V    + G   +A  +   M M  +V+ W A+   C  HG     + + ER  M
Sbjct: 684 SLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKM 742

Query: 506 KLLELD 511
           + ++ D
Sbjct: 743 EGIKPD 748



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 142/507 (28%), Positives = 252/507 (49%), Gaps = 45/507 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+++ G + EA+ L ++M ++G       T  LL   C S      G EI   
Sbjct: 211 SWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLL-SSCKSPSALECGREIHVE 269

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K     D+ V N +++++  CG +  A  VFD+   +++VSW  +I G+   G    A
Sbjct: 270 AMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIA 329

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
             +F+ MQ E V P+ +T I +++A +    L  G+ +H +I  +G    + +  AL+ M
Sbjct: 330 FEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKM 389

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG  +   ++F+ +VN+ +++  TMI G A+ G                   W    
Sbjct: 390 YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG------------------NW---- 427

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                    +EA  ++H+MQ  G+ P+ +T V  L+AC    AL  G  IH  + K+ F 
Sbjct: 428 ---------EEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM 478

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++ +  AL+ MYA+CG+I  A  +F++M  ++ +++TA+IGGLA  G   +A++ F +M
Sbjct: 479 FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDM 538

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              GL P+ +T+  IL+AC     +D GR+   Q+     L+      + +V++    G 
Sbjct: 539 QQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAG-LATDAHVANTLVNMYSMCGS 597

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE------LDPQDSGIY 518
           +++A Q+   M    D+V + A+      H   ++G + A+KL +      L P D   Y
Sbjct: 598 VKDARQVFDRMTQ-RDIVAYNAMIGGYAAH---NLG-KEALKLFDRLQEEGLKP-DKVTY 651

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERG 545
           + + N   +S   E A ++  ++ + G
Sbjct: 652 INMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 227/438 (51%), Gaps = 43/438 (9%)

Query: 56  TGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115
           TGK R A+D+  Q L+  G R ++  Y  + K C  +     G E+  H+++    +D Y
Sbjct: 120 TGKDR-AMDVV-QYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQY 177

Query: 116 VHNAVIHVFVSCGDLGLACNVFDE--SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
             NA+I++++ CG +  A  V+++     R + SWN+++ G+V+ G+  EA++L R+MQ 
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
             +     T + ++S+C     L  GREIH    ++ L   V +AN +++MY KCG +  
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A E+FD M  K+VVS T +I GYA  G  +IA +IF                        
Sbjct: 298 AREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIF------------------------ 333

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
                   +MQ  G+ P+ +T ++ L+A S   AL  G  +H  I       ++ +GTAL
Sbjct: 334 -------QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTAL 386

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           V MYAKCG+     QVF ++  R+ + +  +IGGLA  G   +A   + +M   G+MP++
Sbjct: 387 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNK 446

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSS---IFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           IT++ +L+AC +   +  GR+  +++     +F +S +    + ++ +  R G +++A  
Sbjct: 447 ITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ----NALISMYARCGSIKDARL 502

Query: 471 LIRSMPMAADVVVWGALF 488
           L   M +  D++ W A+ 
Sbjct: 503 LFNKM-VRKDIISWTAMI 519


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/615 (37%), Positives = 350/615 (56%), Gaps = 66/615 (10%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL +  FA S+LI FCA+S   +L Y   +   ++NPN   WN  IRG   +     A+
Sbjct: 54  TGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLAL 113

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           + Y  M+ + GT P+ +T+P +FK C  +     G ++  HVLKLG + + +VH ++I++
Sbjct: 114 EYYVHMI-SSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINM 172

Query: 124 FVSCGDLGLACNVFDESC-------------------------------VRNLVSWNSLI 152
           +   G+L  A  VFD+S                                VR++VSWN++I
Sbjct: 173 YAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMI 232

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGL 211
           +G+ +SG   EA+  F +M+  +V P+  TM+ ++SACAQ    L LG  +  +I + GL
Sbjct: 233 SGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGL 292

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
              + L N L+DMYVKCG LE A                                 +F+ 
Sbjct: 293 GSNIRLVNGLIDMYVKCGDLEEAS-------------------------------NLFEK 321

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           + +K VV WN +IGGY      KEAL LF  M  + I P+ VT +  L AC+ LGALD G
Sbjct: 322 IQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLG 381

Query: 332 IWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            W+H +++K  ++    V L T+L+DMYAKCG++A A ++F  M  ++  T+ A+I G A
Sbjct: 382 KWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFA 441

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
           +HG    A+  FS M   G +PD+ITF+G+L+AC H GL+  GR+YF+ M   +++SPKL
Sbjct: 442 MHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKL 501

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
            HY CM+DL GR+GL +EAE L+++M M  D  +W +L  ACR+H  + + E  A  L E
Sbjct: 502 PHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFE 561

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           L+P++   YVLL+N+Y  +  WE+  K+R  + +  ++K PGCSSIEV+ +++EF+V DK
Sbjct: 562 LEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDK 621

Query: 570 SHPELEQIYDCLVQL 584
            HP+  +IY  L ++
Sbjct: 622 VHPQSNEIYKMLDEI 636


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/585 (37%), Positives = 352/585 (60%), Gaps = 32/585 (5%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG I H  + ++LIA      S  + Y   +  + +  +  +WN  +R F+ +   R
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+  Y +ML      PD FT+P L K CA L    +G  + G V+K     D+Y+   +
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           ++++ +CGDL  A  +F+    RN V W S+I+G++++  P EA+ L++ M+ +   PDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM  +VSACA+L+DL +G ++H +I E  + +   L +AL++MY KCG L++       
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT------- 233

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                   AR++FD L +K V  W+A+I GYV+  RS EAL LF
Sbjct: 234 ------------------------ARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 301 HEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
            E+   + ++P+ VT +  +SAC+QLG L+ G W+H +I +     +V L  +L+DM++K
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I  A ++F  M  ++ +++ +++ G ALHG   +A++ F  M    L PDEITF+G+
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGV 389

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GLV EG+K F ++ +++ +  K +HY CMVDLL R+GLL EA + IR MP+  
Sbjct: 390 LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQP 449

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D  +WG++  ACR++ N+ +GE AA  LL+L+P + G+Y+LL+N+Y    MW E  KVR+
Sbjct: 450 DGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRE 509

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +M E+G++KTPGCSS+ ++ + + F+  D SHPE+ +I   L Q+
Sbjct: 510 LMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQV 554


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/606 (38%), Positives = 351/606 (57%), Gaps = 70/606 (11%)

Query: 11  FAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           +A S+L+ FC +S     L Y   +   +  PN   WN+  RG   +     A+ LY  M
Sbjct: 7   YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           + + G  P+ FT+P L K CA       G +I GHVLKLGFD+D+YVH ++I ++   G 
Sbjct: 67  I-SLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGR 125

Query: 130 LGLACNVFDESC-------------------------------VRNLVSWNSLINGFVRS 158
           L  A  VFD S                                ++++VSWN++I+G+  +
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G  ++A+ LF++M    V+PDE TM  +VSACAQ   + LGR++H +I++ G    + + 
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV 245

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NAL+D+Y KCG++E+A E+ + + N                               K V+
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSN-------------------------------KDVI 274

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+D G WIH +I
Sbjct: 275 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 334

Query: 339 EKENFNLNVV----LGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGK 393
           +K+   + V     L T+L+DMYAKCG+I  A QV        SL T+ A+I G A+HG+
Sbjct: 335 DKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGR 394

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           A  A   FS M   G+ PD+ITF+G+LSAC H G++D GR  F  M   + ++PKL+HY 
Sbjct: 395 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYG 454

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CM+DLLG SGL +EAE++I +MPM  D V+W +L  AC++HGN+ +GE  A KL++++P+
Sbjct: 455 CMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPE 514

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV-EKTPGCSSIEVNGLLYEFIVRDKSHP 572
           + G YVLL+N+Y  +  W E  K+R ++ ++G+ +K PGCSSIE++ +++EFI+ DK HP
Sbjct: 515 NPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHP 574

Query: 573 ELEQIY 578
           +  +IY
Sbjct: 575 QNREIY 580


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/598 (38%), Positives = 346/598 (57%), Gaps = 66/598 (11%)

Query: 15  RLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           +LI F  +S     L Y   I   +Q PN   WN   RG         A+ LY  M+ + 
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMI-SL 59

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  P+++++P L K CA       G +I GHVLKLG+D+DMYV+ ++I ++   G L  A
Sbjct: 60  GLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDA 119

Query: 134 CNVFDESC-------------------------------VRNLVSWNSLINGFVRSGFPR 162
             VFD S                                V+++VSWN++I+G+V +   +
Sbjct: 120 HKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFK 179

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+ L++DM    V+PDE TM+ +VSACAQ   + LGR++H +I + G    + + N L+
Sbjct: 180 EALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLI 239

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           D+Y KCG++E+A              C                  +F  L +K V+ WN 
Sbjct: 240 DLYSKCGEVETA--------------CG-----------------LFQGLAKKDVISWNT 268

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-- 340
           +IGG+      KEAL LF EM  +G  P+ VT +  L AC+ LGA+D G WIH +I K  
Sbjct: 269 LIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRL 328

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +       L T+L+DMYAKCG+I  A QVF  M  R+  ++ A+I G A+HGKA  A   
Sbjct: 329 KGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDL 388

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           FS+M   G+ PD+ITF+G+LSAC H G++D GR  F  MS  ++++PKL+HY CM+DLLG
Sbjct: 389 FSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLG 448

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
             GL +EA+++IR+MPM  D V+W +L  AC++H NV +GE  A  L++++P++ G YVL
Sbjct: 449 HCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVL 508

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           L+N+Y  +  W++  K+R ++ ++G++K PGCSSIE++ +++EFI+ DK HP   +IY
Sbjct: 509 LSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIY 566


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/560 (41%), Positives = 335/560 (59%), Gaps = 32/560 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N +Y  +IL   + PN F +N  IRG +     +E++++Y  M R  G  PD+FT+P + 
Sbjct: 57  NTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSM-RKEGLSPDSFTFPFVL 115

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K CA +    LG ++   V+K G + D +V  ++I+++  CG +  A  VFD+   +N  
Sbjct: 116 KACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFA 175

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW + I+G+V  G  REAI +FR +    + PD  +++ ++SAC +  DL  G  I  YI
Sbjct: 176 SWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI 235

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +E+G+   V +A AL+D Y KCG +E                                AR
Sbjct: 236 TENGMVRNVFVATALVDFYGKCGNMER-------------------------------AR 264

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +FD + EK +V W+++I GY      KEAL LF +M   G+KPD    V  L +C++LG
Sbjct: 265 SVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLG 324

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           AL+ G W    I    F  N VLGTAL+DMYAKCG + +A +VF  M +++ + + A I 
Sbjct: 325 ALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAIS 384

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           GLA+ G   DA+  F +M   G+ PD  TF+G+L AC H GLV+EGR+YF  M  +F L+
Sbjct: 385 GLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLT 444

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P+++HY CMVDLLGR+G L+EA QLI+SMPM A+ +VWGAL   CRLH +  + E    K
Sbjct: 445 PEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKK 504

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L+ L+P  SG YVLL+N+Y  S+ WEEA K+R +M ERGV+K PG S IEV+G++++F+V
Sbjct: 505 LIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLV 564

Query: 567 RDKSHPELEQIYDCLVQLTR 586
            D SHP  E+IY  L +L +
Sbjct: 565 GDTSHPLSEKIYAKLGELAK 584



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 217/444 (48%), Gaps = 36/444 (8%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   +L+LG D D Y+ N V+    + G+   +  + D++   N+  +N++I G V +  
Sbjct: 29  IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDC 88

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            +E+I ++  M+ E + PD  T   ++ ACA++ D  LG ++H  + ++G      +  +
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKIS 148

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+++Y KCG +++A ++FD + +K   S                               W
Sbjct: 149 LINLYTKCGFIDNAFKVFDDIPDKNFAS-------------------------------W 177

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A I GYV   + +EA+ +F  +   G++PD+ + V  LSAC + G L  G WI  +I +
Sbjct: 178 TATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITE 237

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                NV + TALVD Y KCGN+ +A  VF  M E+N ++++++I G A +G   +A+  
Sbjct: 238 NGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDL 297

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F +M+  GL PD    +G+L +C   G ++ G  + + + +           + ++D+  
Sbjct: 298 FFKMLNEGLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYA 356

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQDSGIY 518
           + G ++ A ++ R M    D VVW A      + G+V  ++G    M+   + P D   +
Sbjct: 357 KCGRMDRAWEVFRGM-RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKP-DRNTF 414

Query: 519 VLLANMYRDSNMWEEAGKVRKMME 542
           V L      + + EE  +    ME
Sbjct: 415 VGLLCACTHAGLVEEGRRYFNSME 438


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/618 (38%), Positives = 360/618 (58%), Gaps = 66/618 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M   GL +  +A S+LI FC +S   + L Y   +   +Q PN   WN   RG   +   
Sbjct: 56  MIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+++T+P + K CA       G +I GHVLKLG D+D+YVH +
Sbjct: 116 VSALKLYVCMI-SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I ++V  G L  A  VFD+S                                V+++VSW
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSW 234

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF+DM    V PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y KCG+LE+A              C                  +
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETA--------------CG-----------------L 323

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ LP K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I+K  +       L T+L+DMYAKCG+I  A QVF+ +  ++  ++ A+I 
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HG+A  +   FS M  +G+ PD+ITF+G+LSAC H G++D GR  F  M+  ++++
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG SGL +EAE++I  M M  D V+W +L  AC++HGNV +GE  A  
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++++P++ G YVLL+N+Y  +  W E  K R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623

Query: 567 RDKSHPELEQIYDCLVQL 584
            DK HP   +IY  L ++
Sbjct: 624 GDKFHPRNREIYGMLEEM 641


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/621 (38%), Positives = 354/621 (57%), Gaps = 71/621 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNV--QNPNSFSWNVAIRGFLETGKMRE 61
           +GL +  FA S+LI FCA+S S++L Y   +  ++  Q PN F WN  IR    T     
Sbjct: 51  SGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTS 110

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           ++ L+ QML +G   P++ T+P LFK CA         ++  H LKL   +  +VH ++I
Sbjct: 111 SLHLFSQMLHSG-LYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLI 169

Query: 122 HVFVSCGDLGLACNVFDESCVRN-------------------------------LVSWNS 150
           H++   G+L  A  VFD+S +R+                               +VSWN+
Sbjct: 170 HMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNA 229

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G+V+SG   EA+  F  MQ   V P++ TM+ ++SAC  L  L LG+ I  ++ + G
Sbjct: 230 MIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRG 289

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
               + L NAL+DMY KCG++ +A                               RK+FD
Sbjct: 290 FGKNLQLVNALVDMYSKCGEIGTA-------------------------------RKLFD 318

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            + +K V+ WN +IGGY      +EAL LF  M    + P+ VT +  L AC+ LGALD 
Sbjct: 319 GMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDL 378

Query: 331 GIWIHRFIEKE-----NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           G W+H +I+K      N N NV L T+++ MYAKCG +  A QVF  M  R+  ++ A+I
Sbjct: 379 GKWVHAYIDKNLKGTGNVN-NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMI 437

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            GLA++G A  A+  F EMI  G  PD+ITF+G+LSAC   G V+ G +YF+ M+  + +
Sbjct: 438 SGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGI 497

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
           SPKL+HY CM+DLL RSG  +EA+ L+ +M M  D  +WG+L  ACR+HG V  GE  A 
Sbjct: 498 SPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAE 557

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +L EL+P++SG YVLL+N+Y  +  W++  K+R  + ++G++K PGC+SIE++G+++EF+
Sbjct: 558 RLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFL 617

Query: 566 VRDKSHPELEQIYDCLVQLTR 586
           V DK HP+ E I+  L ++ R
Sbjct: 618 VGDKFHPQSENIFRMLDEVDR 638


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/584 (39%), Positives = 353/584 (60%), Gaps = 4/584 (0%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  + LI F A  E  ++D+  K+   +   N  SW   I G+    + +EAV 
Sbjct: 161 GLEEDVFIQNCLIHFYA--ECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVS 218

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M+   G RP + T   +   CA L    +G  +  ++ +LG  ++  + NA++ ++
Sbjct: 219 LFFEMVE-AGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMY 277

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
           + CG +  A  +FDE   RNLV +N++++ + R G  REA+ +  +M  +   PD VTM+
Sbjct: 278 MKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTML 337

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
             +SA AQL DL  G+  H Y+  +GL     + N ++DMY+KCGK E A  +FD M NK
Sbjct: 338 SAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNK 397

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
           TVVS  ++  G+ + G ++ A ++F+ +PE+  V WN +I G VQ    ++A+ LF EMQ
Sbjct: 398 TVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ 457

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             GIK D VT +   SAC  LGA +   W+H +IEK     ++ L TALVDM+A+CG+  
Sbjct: 458 GEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQ 517

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A+QVF++M ER+   +TA IG +A+ G    A   F++M+  G+ PD + F+ +L+AC 
Sbjct: 518 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS 577

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           HGG V++G   F+ M     +SP+++HY CMVDLLGR+GLL EA  LI+SMPM  + VVW
Sbjct: 578 HGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVW 636

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           G+L  ACR+H NV +   AA ++ EL PQ +G++VLL+N+Y  +  W +  +VR  + E+
Sbjct: 637 GSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREK 696

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           GV K PG SS++VNG+++EF   D+SHPE+  I   L ++   F
Sbjct: 697 GVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRF 740



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 172/585 (29%), Positives = 278/585 (47%), Gaps = 86/585 (14%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKI--LF--NVQNPNS-FSWNVAIRGFLET 56
           T+T L++ G           I+  ++LDY  K   LF  +V++ ++ F  N  IRG+   
Sbjct: 59  TLTKLVNAG---------AEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSA 109

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G  REA+ LY +ML  G T P+++T+P +   C  +     G ++ G V+K+G + D+++
Sbjct: 110 GLGREAILLYVRMLVLGVT-PNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFI 168

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N +IH +  CG +     VF+    RN+VSW SLI G+ R   P+EA+ LF +M    +
Sbjct: 169 QNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGI 228

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P  VTM+ ++SACA+L DL++G  +  YI E GL L   + NAL+DMY+KCG +++A+ 
Sbjct: 229 RPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKR 288

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD  V++ +V   T++  YA+ G                                ++EA
Sbjct: 289 LFDECVDRNLVLYNTILSNYARQGL-------------------------------AREA 317

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           LA+  EM   G +PD VT +  +SA +QL  L  G   H ++ +        +G  ++DM
Sbjct: 318 LAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDM 377

Query: 357 YAKC-------------------------------GNIAKALQVFHEMPERNSLTYTAII 385
           Y KC                               G++  A +VF+++PERN++ +  +I
Sbjct: 378 YMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMI 437

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            GL       DAI  F EM G G+  D +T +GI SAC + G   E  K+         +
Sbjct: 438 SGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGI 496

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA- 504
              ++  + +VD+  R G  + A Q+   M    DV  W A      + GN   GE A  
Sbjct: 497 PCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEGN---GEGATG 552

Query: 505 ---MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
                L++    D  ++V +          E+   +  +ME+ G+
Sbjct: 553 LFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGI 597



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 198/412 (48%), Gaps = 62/412 (15%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NSLI G+  +G  REAI L+  M +  V P+  T   ++S C ++     G ++H  + +
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            GL   V + N L+  Y +CG ++   ++F+ M  + VVS T++I GYA+          
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR---------- 209

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  R KEA++LF EM   GI+P +VT V  +SAC++L  L
Sbjct: 210 ---------------------GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDL 248

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           D G  +  +I +    LN V+  ALVDMY KCG I  A ++F E  +RN + Y  I+   
Sbjct: 249 DMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 308

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-----------CHGGLVDEGRKYFA 437
           A  G A +A++   EM+  G  PD +T L  +SA            CHG ++  G + + 
Sbjct: 309 ARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWD 368

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            + ++            ++D+  + G  E A ++   M     VV W +L      +G+V
Sbjct: 369 SIGNV------------IIDMYMKCGKPEMACRVFDLMSNKT-VVSWNSLTAGFIRNGDV 415

Query: 498 SIGERAAMKLLELDPQDSGIY--VLLANMYRDSNMWEEAGKVRKMMEERGVE 547
                +A ++    P+ + ++   +++ + + S ++E+A ++ + M+  G++
Sbjct: 416 ----ESAWEVFNQIPERNAVFWNTMISGLVQKS-LFEDAIELFREMQGEGIK 462


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/581 (41%), Positives = 359/581 (61%), Gaps = 8/581 (1%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG     F  + LI+F A + S  L +   +   + NP+ F +N+ IR F  +    
Sbjct: 1   MVVTGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPH 60

Query: 61  EAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            A+ LYK+ML +     PD FT+P L K CA L L  LG ++  HV K GF+ +++V NA
Sbjct: 61  NALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNA 120

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ V+   GD   AC VFDES VR+ VS+N++ING VR+G    ++R+F +M+   VEPD
Sbjct: 121 LLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPD 180

Query: 180 EVTMIGMVSACAQLEDLNLGREIHW--YISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           E T + ++SAC+ LED  +GR +H   Y           L NAL+DMY KCG LE AE +
Sbjct: 181 EYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERV 240

Query: 238 FDSMVNKT-VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
             +   K+ V + T+++  YA  G +++AR++FD + E+ VV W A+I GY  A   +EA
Sbjct: 241 VRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEA 300

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL--NVVLGTALV 354
           L LF E++  G++PD V  V  LSAC++LGAL+ G  IH   +++++    N     A+V
Sbjct: 301 LELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVV 360

Query: 355 DMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           DMYAKCG+I  AL VF +  +  + +  Y +I+ GLA HG+   A++ F EM  VGL PD
Sbjct: 361 DMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPD 420

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           E+T++ +L AC H GLVD G++ F  M S + ++P+++HY CMVDLLGR+G L EA  LI
Sbjct: 421 EVTYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLI 480

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           ++MP  A+ V+W AL  AC++ G+V +   A+ +LL ++      YV+L+NM    +  +
Sbjct: 481 QNMPFKANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHD 540

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           EA  VR+ ++  G++K PG S +E+NG L++F+  DKSHPE
Sbjct: 541 EAASVRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHPE 581


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 343/579 (59%), Gaps = 35/579 (6%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I+ GF    ++     S   +  +L+   ++   +   +  SWN  I G+ + G+  EA
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEA 205

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + L+ +M  NG  +P++ T   +  VCA L     G +I  + ++ G + D+ V N +++
Sbjct: 206 LALFSEMQVNG-IKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVN 264

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG++  A  +F+   +R++ SWN++I G+  +    EA+  F  MQ+  ++P+ +T
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           M+ ++ ACA L  L  G++IH Y   SG      + NAL++MY KCG + SA        
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSA-------- 376

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                                   K+F+ +P+K VV WNAII GY Q     EALALF E
Sbjct: 377 -----------------------YKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIE 413

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQA GIKPD+   V  L AC+   AL+ G  IH +  +  F  NVV+GT LVD+YAKCGN
Sbjct: 414 MQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGN 473

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A ++F  MPE++ +++T +I    +HG   DA++ FS+M   G   D I F  IL+A
Sbjct: 474 VNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTA 533

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLVD+G +YF  M S + L+PKL+HY+C+VDLLGR+G L+EA  +I++M +  D  
Sbjct: 534 CSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDAN 593

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           VWGAL  ACR+H N+ +GE+AA  L ELDP ++G YVLL+N+Y ++  WE+  K+RKMM+
Sbjct: 594 VWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMK 653

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           E+GV+K PGCS + V+  +  F+V D++HP+ EQIY  L
Sbjct: 654 EKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAML 692



 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 242/456 (53%), Gaps = 36/456 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+  W   I G+++ G   +A+ LY QM R G   PD   +  + K C S      G ++
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              ++  GF+ D+ V  A+  ++  CG L  A  VFD    R++VSWN++I G+ ++G P
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA+ LF +MQ+  ++P+  T++ ++  CA L  L  G++IH Y   SG+   V + N L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           ++MY KCG + +A ++F+ M                               P + V  WN
Sbjct: 263 VNMYAKCGNVNTAHKLFERM-------------------------------PIRDVASWN 291

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           AIIGGY    +  EALA F+ MQ  GIKP+++T V  L AC+ L AL+ G  IH +  + 
Sbjct: 292 AIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS 351

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  N V+G ALV+MYAKCGN+  A ++F  MP++N + + AII G + HG   +A++ F
Sbjct: 352 GFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALF 411

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLG 460
            EM   G+ PD    + +L AC H   +++G++     + S F  +  +   + +VD+  
Sbjct: 412 IEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG--TGLVDIYA 469

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           + G +  A++L   MP   DVV W  +  A  +HG+
Sbjct: 470 KCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGH 504



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 192/362 (53%), Gaps = 36/362 (9%)

Query: 137 FDESCVRN-LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           F ++ +RN  V W   I G+V++GF  +A+RL+  MQ   + PD++  + ++ AC    D
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L  GR++H  I   G    V +  AL  MY KCG LE+                      
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLEN---------------------- 173

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                    AR++FD +P++ VV WNAII GY Q  +  EALALF EMQ  GIKP++ T 
Sbjct: 174 ---------ARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTL 224

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           V  +  C+ L AL+ G  IH +  +     +V++   LV+MYAKCGN+  A ++F  MP 
Sbjct: 225 VSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPI 284

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+  ++ AIIGG +L+ +  +A+++F+ M   G+ P+ IT + +L AC H   +++G++ 
Sbjct: 285 RDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQI 344

Query: 436 FA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
               + S F  +  +   + +V++  + G +  A +L   MP   +VV W A+      H
Sbjct: 345 HGYAIRSGFESNDVVG--NALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401

Query: 495 GN 496
           G+
Sbjct: 402 GH 403


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 327/555 (58%), Gaps = 32/555 (5%)

Query: 31  CTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           C ++   + N +  +WN  I G  E G   EA ++Y QM R G   P+  TY +L   C 
Sbjct: 281 CRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG-VMPNKITYVILLNACV 339

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
           +      G EI   V K GF  D+ V NA+I ++  CG +  A  VFD+   ++++SW +
Sbjct: 340 NSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTA 399

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G  +SGF  EA+ ++++MQ   VEP+ VT   +++AC+    L  GR IH  + E+G
Sbjct: 400 MIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAG 459

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L     + N L++MY  CG ++ A                               R++FD
Sbjct: 460 LATDAHVGNTLVNMYSMCGSVKDA-------------------------------RQVFD 488

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            + ++ +V +NA+IGGY      KEAL LF  +Q  G+KPD VT ++ L+AC+  G+L+ 
Sbjct: 489 RMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEW 548

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              IH  + K  F  +  +G ALV  YAKCG+ + A  VF +M +RN +++ AIIGG A 
Sbjct: 549 AREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQ 608

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG+  DA+  F  M   G+ PD +TF+ +LSAC H GL++EGR+YF  MS  F + P ++
Sbjct: 609 HGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIE 668

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CMVDLLGR+G L+EAE LI++MP  A+  +WGAL  ACR+HGNV + ERAA   L+L
Sbjct: 669 HYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKL 728

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           D  ++ +YV L++MY  + MW+ A K+RK+ME+RGV K PG S I+V   L+ F+  D+S
Sbjct: 729 DLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRS 788

Query: 571 HPELEQIYDCLVQLT 585
           HP+ E+IY  L +LT
Sbjct: 789 HPQSEKIYAELDRLT 803



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 242/492 (49%), Gaps = 44/492 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++   ++   ++  +  SW + I G+ + G+   A +++++M + G   P+  TY  + 
Sbjct: 176 SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEG-VVPNRITYISVL 234

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
              +S      G  +   +L  G + D  V  A++ ++  CG       VF++   R+L+
Sbjct: 235 NAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 294

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +WN++I G    G+  EA  ++  MQ E V P+++T + +++AC     L+ G+EIH  +
Sbjct: 295 AWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRV 354

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +++G T  + + NAL+ MY +CG ++ A  +FD MV K V+S T MI G AK GF     
Sbjct: 355 AKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF----- 409

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                       EAL ++ EMQ  G++P+ VT    L+ACS   
Sbjct: 410 --------------------------GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPA 443

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           AL+ G  IH+ + +     +  +G  LV+MY+ CG++  A QVF  M +R+ + Y A+IG
Sbjct: 444 ALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIG 503

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A H    +A+  F  +   GL PD++T++ +L+AC + G ++  R    ++ ++ R  
Sbjct: 504 GYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAR----EIHTLVRKG 559

Query: 447 PKLKHYS---CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN----VSI 499
                 S    +V    + G   +A  +   M    +V+ W A+      HG     + +
Sbjct: 560 GFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRNVISWNAIIGGSAQHGRGQDALQL 618

Query: 500 GERAAMKLLELD 511
            ER  M+ ++ D
Sbjct: 619 FERMKMEGVKPD 630



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 250/507 (49%), Gaps = 45/507 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+++ G + +A+ L +QM ++ G  PD  T       C S G    G EI   
Sbjct: 93  SWNAMVVGYIQYGYIEKALKLLRQMQQH-GLAPDRTTIMSFLSSCKSPGALEWGREIHFQ 151

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            ++ G   D+ V N +++++  CG +  A  VFD+   +++VSW   I G+   G    A
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETA 211

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
             +F+ M+ E V P+ +T I +++A +    L  G+ +H  I  +G      +  AL+ M
Sbjct: 212 FEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKM 271

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG  +   ++F+ +VN+ +++  TMI G A+ G+ +                     
Sbjct: 272 YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWE--------------------- 310

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                     EA  ++++MQ  G+ P+ +T V  L+AC    AL  G  IH  + K  F 
Sbjct: 311 ----------EASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFT 360

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++ +  AL+ MY++CG+I  A  VF +M  ++ +++TA+IGGLA  G   +A++ + EM
Sbjct: 361 SDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEM 420

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G+ P+ +T+  IL+AC     ++ GR+   Q+     L+      + +V++    G 
Sbjct: 421 QQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMCGS 479

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE------LDPQDSGIY 518
           +++A Q+   M +  D+V + A+      H   ++G + A+KL +      L P D   Y
Sbjct: 480 VKDARQVFDRM-IQRDIVAYNAMIGGYAAH---NLG-KEALKLFDRLQEEGLKP-DKVTY 533

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERG 545
           + + N   +S   E A ++  ++ + G
Sbjct: 534 INMLNACANSGSLEWAREIHTLVRKGG 560



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 220/429 (51%), Gaps = 36/429 (8%)

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           AVD+  Q L+  G + ++  Y  + K C  +     G ++  H+++     D Y  NA+I
Sbjct: 7   AVDVV-QYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 122 HVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++++ CG +  A  V+ +     R + SWN+++ G+++ G+  +A++L R MQ   + PD
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T++  +S+C     L  GREIH+   ++GL   V +AN +++MY KCG +E A     
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEA----- 180

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                     R++FD + +K VV W   IGGY    RS+ A  +
Sbjct: 181 --------------------------REVFDKMEKKSVVSWTITIGGYADCGRSETAFEI 214

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M+  G+ P+ +T +  L+A S   AL  G  +H  I       +  +GTALV MYAK
Sbjct: 215 FQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAK 274

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+     QVF ++  R+ + +  +IGGLA  G   +A   +++M   G+MP++IT++ +
Sbjct: 275 CGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVIL 334

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC +   +  G++  ++++     +  +   + ++ +  R G +++A  +   M +  
Sbjct: 335 LNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRK 392

Query: 480 DVVVWGALF 488
           DV+ W A+ 
Sbjct: 393 DVISWTAMI 401


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 333/576 (57%), Gaps = 69/576 (11%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR-EAVDLYKQMLRN 72
           +RL A CA S   +  Y   +L  ++ PN   +N  IRG   +     E + +YKQML +
Sbjct: 75  TRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQML-S 133

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
            G  PDN+T P + K CA       G E+ G  +K+G   D+YV N ++ ++  C  +  
Sbjct: 134 KGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRS 193

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD S  R+LVSW ++I G+V+ GF RE + L+                        
Sbjct: 194 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLY------------------------ 229

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
                        I  S + L V + NAL+DMY+KCG    A ++F  M  K VVS    
Sbjct: 230 ------------IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS---- 273

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
                                      WN++I G  Q  + KE+L +F +MQ  G+KPD 
Sbjct: 274 ---------------------------WNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           VT V  L++C+ LG L+ G W+H ++++     +  +G ALVDMYAKCG+I +A  VF  
Sbjct: 307 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQA 366

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M  ++  +YTA+I GLA+HG+   A+  FSEM  +G+ PDE+TF+G+L+AC H GLV+EG
Sbjct: 367 MNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEG 426

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           RKYF  MS+I+ L P+L+HY CMVDLLGR+GL+ EAE+ IR+MP+  D  V GAL  AC+
Sbjct: 427 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACK 486

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           +HG V +GE    K+ +++P+  G YVL++N+Y  +N W +A K+RK M+ER +EKTPGC
Sbjct: 487 IHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGC 546

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           SSIE++G+++EF   DKSHP++++IY  L ++  H 
Sbjct: 547 SSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHL 582


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 347/572 (60%), Gaps = 35/572 (6%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           LI  CA+ +  + +Y   +   V+ PN F WN  IRG +      +A+ LY  M R GG 
Sbjct: 53  LILCCAL-DFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGF 110

Query: 76  RPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            P+NFT P + K CA  L +R LG +I   ++K G+D D++V  +++ ++V C +   A 
Sbjct: 111 LPNNFTIPFVLKACARKLDVR-LGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL 169

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VFD+   +N+VSW ++I G++ SG  REAI  F+ +    ++PD  +++ +++ACA+L 
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           D   G  I  YIS+SG+   V +A +L+DM                              
Sbjct: 230 DCTSGEWIDRYISDSGMGRNVFVATSLLDM------------------------------ 259

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            Y K G L+ A  IF  +PEK +V W+ +I GY      ++AL LF +MQ+  +KPD  T
Sbjct: 260 -YVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYT 318

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            V  LSAC+ LGALD GIW    +++  F  N VLGTAL+DMY+KCG++ +A ++F  M 
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ + + A++ GL+++G A    S FS +   G+ PDE TF+G+L  C HGG V+EGR+
Sbjct: 379 KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQ 438

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F  M  +F L+P ++HY CMVDLLGR+GLL EA QLI +MPM  + VVWGAL   C+LH
Sbjct: 439 FFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            +  + E+   KL+EL+P +SG YV L+N+Y  ++ WEEA K+R  M+E+ ++K   CS 
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           IE++G+++EF+V DKSH   E+IY  L +L R
Sbjct: 559 IEIDGIVHEFLVGDKSHWLSEKIYAKLDELGR 590



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 208/427 (48%), Gaps = 39/427 (9%)

Query: 75  TRPDN--FTYPLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           T P +  F+  L  K   S GL F      I   +L+L  D D Y+ N ++   +  G  
Sbjct: 5   TNPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGST 64

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             +  VF +    N+  WN++I G V      +AI L+  M+     P+  T+  ++ AC
Sbjct: 65  NYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A+  D+ LG +IH  + ++G    V +  +L+ +YVKC   + A ++FD + +K VVS T
Sbjct: 125 ARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWT 184

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
            +I GY   G                                 +EA+  F ++   G+KP
Sbjct: 185 AIITGYISSGHF-------------------------------REAIGAFKKLLEMGLKP 213

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D+ + V  L+AC++LG    G WI R+I       NV + T+L+DMY KCGN+ +A  +F
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIF 273

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             MPE++ ++++ +I G A +G    A+  F +M    L PD  T +G+LSAC   G +D
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALD 333

Query: 431 EGRKYFAQMS-SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            G    + M  + F  +P L   + ++D+  + G + +A ++  +M    D VVW A+  
Sbjct: 334 LGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMV 390

Query: 490 ACRLHGN 496
              ++G+
Sbjct: 391 GLSMNGH 397


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 346/572 (60%), Gaps = 35/572 (6%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           LI  CA+ +  + +Y   +   V+ PN F WN  IRG +      +A+ LY  M R GG 
Sbjct: 53  LILCCAL-DFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGF 110

Query: 76  RPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            P+NFT P + K CA  L +R LG +I   ++K G+D D++V  +++ ++V C +   A 
Sbjct: 111 LPNNFTIPFVLKACARKLDVR-LGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL 169

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VFD+   +N+VSW ++I G++ SG  REAI  F+ +    ++PD  +++ +++ACA+L 
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           D   G  I  YIS+SG+   V +A +L+DM                              
Sbjct: 230 DCTSGEWIDRYISDSGMGRNVFVATSLLDM------------------------------ 259

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            Y K G L+ A  IF  +PEK +V W+ +I GY      ++AL LF +MQ+  +KPD  T
Sbjct: 260 -YVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYT 318

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            V  LSAC+ LGALD GIW    +++  F  N VLGTAL+DMY+KCG++ +A ++F  M 
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            ++ + + A++ GL+++G A    S FS +   G+ PDE TF+G+L  C HGG V+EGR+
Sbjct: 379 RKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQ 438

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F  M  +F L+P ++HY CMVDLLGR+GLL EA QLI +MPM  + VVWGAL   C+LH
Sbjct: 439 FFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            +  + E+   KL+EL+P +SG YV L+N+Y  ++ WEEA K+R  M+E+ ++K   CS 
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           IE++G+++EF+V DKSH   E+IY  L +L R
Sbjct: 559 IEIDGIVHEFLVGDKSHWLSEKIYAKLDELGR 590



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 205/420 (48%), Gaps = 37/420 (8%)

Query: 80  FTYPLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           F+  L  K   S GL F      I   +L+L  D D Y+ N ++   +  G    +  VF
Sbjct: 12  FSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF 71

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
            +    N+  WN++I G V      +AI L+  M+     P+  T+  ++ ACA+  D+ 
Sbjct: 72  SQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVR 131

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
           LG +IH  + ++G    V +  +L+ +YVKC   + A ++FD + +K VVS T +I GY 
Sbjct: 132 LGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYI 191

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
             G                                 +EA+  F ++   G+KPD+ + V 
Sbjct: 192 SSGHF-------------------------------REAIGAFKKLLEMGLKPDSFSLVK 220

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L+AC++LG    G WI R+I       NV + T+L+DMY KCGN+ +A  +F  MPE++
Sbjct: 221 VLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKD 280

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            ++++ +I G A +G    A+  F +M    L PD  T +G+LSAC   G +D G    +
Sbjct: 281 IVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASS 340

Query: 438 QMS-SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            M  + F  +P L   + ++D+  + G + +A ++  +M    D VVW A+     ++G+
Sbjct: 341 LMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAMMVGLSMNGH 397


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 351/607 (57%), Gaps = 70/607 (11%)

Query: 16  LIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG 74
           L+  C +S     L Y   +   +Q PN   WN  +RG   +     A+++Y +M+ + G
Sbjct: 1   LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMV-SLG 59

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF---------- 124
             P+++++P L K CA       G +I   VLKLG  +D YVH ++I ++          
Sbjct: 60  HLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDAR 119

Query: 125 -----------VSC----------GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
                      VSC          GD   A  VFDE   R++VSWN++I G+V +G   E
Sbjct: 120 KVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEE 179

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES----GLTLTVPLAN 219
           A+ LF++M    V PDE T++ +VSACAQ   + LGR++H ++ +     G + ++ + N
Sbjct: 180 ALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVN 239

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+D+Y KCG +E+A                        FG       +F+ L  K VV 
Sbjct: 240 ALIDLYSKCGDVETA------------------------FG-------LFEGLSCKDVVS 268

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+D G WIH +I+
Sbjct: 269 WNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYID 328

Query: 340 KE--NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           K+         L T+L+DMYAKCG+I  A QVF+ M  R+  ++ A+I G A+HG+A  A
Sbjct: 329 KKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAA 388

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
              FS M G  + PD+ITF+G+LSAC H GL+D GR+ F  M+  + L+PKL+HY CM+D
Sbjct: 389 FDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMID 448

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLG SGL +EAE++I +MPM  D V+W +L  AC+ HGN+ + E  A KL++++P++SG 
Sbjct: 449 LLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGS 508

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLL+N+Y  +  WE+  +VR ++  +G++K PGCSSIEV+ +++EFI+ DK HP   +I
Sbjct: 509 YVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREI 568

Query: 578 YDCLVQL 584
           Y  L ++
Sbjct: 569 YHMLEEM 575


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/534 (39%), Positives = 327/534 (61%), Gaps = 32/534 (5%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +NV +R FL  G   +A+ L+ +ML      P D  T     K C+ +    +G  +  +
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G   D +V +++IH++ SCGD+  A  VFD +    +V WN+++  ++++G   E 
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +F+ M    V  DEVT++ +V+AC ++ D  LG+ +  ++ E GL     L  ALMDM
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDM 265

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG++  A                               R++FD +  + VV W+A+I
Sbjct: 266 YAKCGEIGKA-------------------------------RRLFDGMQSRDVVAWSAMI 294

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY QA + +EAL LF EMQ   ++P+ VT V  LSAC+ LGAL+ G W+H ++ ++  +
Sbjct: 295 SGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLS 354

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L  +LGTALVD YAKCG I  A++ F  MP +NS T+TA+I G+A +G+  +A+  FS M
Sbjct: 355 LTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSM 414

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G+ P ++TF+G+L AC H  LV+EGR++F  M+  + + P+++HY CMVDLLGR+GL
Sbjct: 415 REAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGL 474

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           ++EA Q IR+MP+  + V+W AL  +C +H NV IGE A  +++ L+P  SG YVLL+N+
Sbjct: 475 VDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNI 534

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           Y  +  W++A  VRK M++RG+EKTPGCS IE++G+++EF   D  HPEL +IY
Sbjct: 535 YASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIY 588



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 2/210 (0%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +Q+ +  +W+  I G+ +  + REA+ L+ +M +     P++ T   +   CA L
Sbjct: 277 RLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM-QLARVEPNDVTMVSVLSACAVL 335

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  +  +V +    +   +  A++  +  CG +  A   F+   V+N  +W +LI
Sbjct: 336 GALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI 395

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISESGL 211
            G   +G  REA+ LF  M+   +EP +VT IG++ AC+    +  GR        + G+
Sbjct: 396 KGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGI 455

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              V     ++D+  + G ++ A +   +M
Sbjct: 456 KPRVEHYGCMVDLLGRAGLVDEAYQFIRTM 485



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 34/160 (21%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS++W   I+G    G+ REA++L+  M R  G  P + T+  +   C+   L   G   
Sbjct: 387 NSWTWTALIKGMATNGRGREALELFSSM-REAGIEPTDVTFIGVLMACSHSCLVEEGRRH 445

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
           F  + +                     D G+   V    C+ +L+          R+G  
Sbjct: 446 FDSMAR---------------------DYGIKPRVEHYGCMVDLLG---------RAGLV 475

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            EA +  R M    +EP+ V    ++S+CA   ++ +G E
Sbjct: 476 DEAYQFIRTMP---IEPNAVIWRALLSSCAVHRNVGIGEE 512


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 350/602 (58%), Gaps = 66/602 (10%)

Query: 17  IAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           + FC +S   + L Y   +   +Q PN   WN   RG   +     A+ LY  M+ + G 
Sbjct: 1   LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMI-SLGL 59

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV---------- 125
            P+++T+P L K CA L     G +I GHVLKLG+++D+YVH ++I ++V          
Sbjct: 60  LPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHK 119

Query: 126 ---------------------SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
                                S G +  A N+FDE  V+++VSWN++I+G+V +G  +EA
Sbjct: 120 VFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEA 179

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF++M    V PDE TM+ ++SA A+   + LGR++H +I++ G    + + NAL+D 
Sbjct: 180 LELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDF 239

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG++E+A              C                  +F  L  K V+ WN +I
Sbjct: 240 YSKCGEMETA--------------CG-----------------LFLGLSYKDVISWNILI 268

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK--EN 342
           GGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+D G WIH +I+K  + 
Sbjct: 269 GGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKG 328

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
                 L T+L+DMY+KCG+I  A QVF+ M  ++   + A+I G A+HG+A  A   FS
Sbjct: 329 VTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFS 388

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
            M    + PD+ITF+G+LSAC H G++D GR  F  M+  ++++PKL+HY CM+DLLG S
Sbjct: 389 RMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHS 448

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           GL +EAE++I +M M  D V+W +L  AC++HGNV +GE+ A  L +++P + G YVLL+
Sbjct: 449 GLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLS 508

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y  +  W E  ++R ++ ++G++K PGCSSIE++ +++EFI+ DK HP   +IY  L 
Sbjct: 509 NIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 568

Query: 583 QL 584
           ++
Sbjct: 569 EM 570


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 346/573 (60%), Gaps = 3/573 (0%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL+   F  + LI F A      +D   K+   +   N  SW   I G+      +EAV 
Sbjct: 152 GLVKDLFVANSLIHFYA--ACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVC 209

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M+   G  P+  T       CA L    LG ++   + +LG   +  V NA++ ++
Sbjct: 210 LFFEMVE-VGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMY 268

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
           + CGD+     +FDE   +NLV +N++++ +V+ G   E + +  +M  +   PD+VTM+
Sbjct: 269 MKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTML 328

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
             ++ACAQL DL++G+  H Y+  +GL     ++NA++DMY+KCGK E+A ++FDSM NK
Sbjct: 329 STIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNK 388

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
           TVV+  ++I G  + G L++A +IF ++PE  +V WN +IG  VQA   +EA+ L  EMQ
Sbjct: 389 TVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQ 448

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             GIK D VT V   SAC  LGALD   WI+ +IEK + ++++ LGTALVDM+++CG+  
Sbjct: 449 NQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPL 508

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A++VF  M +R+   +TA I   A+ G A  AI  F EM+   +  D+  F+ +L+A  
Sbjct: 509 NAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFS 568

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           HGG VD+GR+ F  M  I  +SP++ HY CMVDLLGR+GLLEEA  L++SMP+  + V+W
Sbjct: 569 HGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIW 628

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           G+   ACR H NV     A  K+ +L P+  GI+VLL+N+Y  +  W +  +VR  M+E+
Sbjct: 629 GSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEK 688

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           G +K  G SSIEV+GL+ EF   D+SH E  QI
Sbjct: 689 GFQKVAGSSSIEVHGLIREFTSGDESHTENAQI 721



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 159/539 (29%), Positives = 258/539 (47%), Gaps = 72/539 (13%)

Query: 11  FAPSRLIAFCA-ISESKNLDYCTKILFNVQNPNS--FSWNVAIRGFLETGKMREAVDLYK 67
           F  ++LIA C  +   ++L+Y        +      ++ N  IRG+  +G  +EA+ +Y 
Sbjct: 51  FNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYL 110

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
            M+   G  PDNFT+P L   C+ +     G ++ G V+K+G   D++V N++IH + +C
Sbjct: 111 HMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAAC 170

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G + L   VFDE   RN+VSW SLING+      +EA+ LF +M    VEP+ VTM+  +
Sbjct: 171 GKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAI 230

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SACA+L+DL LG+++   ++E G+     + NAL+DMY+KCG + +  EIFD        
Sbjct: 231 SACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFD-------- 282

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                                  +  +K +V +N I+  YVQ   + E L +  EM   G
Sbjct: 283 -----------------------EFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKG 319

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN----- 362
            +PD VT +  ++AC+QLG L  G   H ++ +        +  A++DMY KCG      
Sbjct: 320 QRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAAC 379

Query: 363 --------------------------IAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
                                     +  AL++F EMPE N +++  +IG +       +
Sbjct: 380 KVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEE 439

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           AI    EM   G+  D +T +GI SAC + G +D  +  +  +     +   ++  + +V
Sbjct: 440 AIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEK-NDIHIDMQLGTALV 498

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL-ELDPQD 514
           D+  R G    A ++  +M    DV  W A      + GN     + A++L  E+  QD
Sbjct: 499 DMFSRCGDPLNAMRVFENME-KRDVSAWTAAIRVKAVEGNA----KGAIELFDEMLKQD 552



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF---LDIARKIF--DDLPEKYVVPWNA 282
           C  L   +++  +M+ K V +   +I    + G    L+ A   F  D+  +  +   N 
Sbjct: 32  CKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNT 91

Query: 283 IIGGYVQAKRSKEALALF-HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           +I GY  +   KEA+ ++ H +   GI PD  T    LSACS++ A  +G+ +H  + K 
Sbjct: 92  LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM 151

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               ++ +  +L+  YA CG +    +VF EM ERN +++T++I G ++   A +A+  F
Sbjct: 152 GLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLF 211

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            EM+ VG+ P+ +T +  +SAC     ++ G+K    M+ +
Sbjct: 212 FEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTEL 252


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/532 (41%), Positives = 328/532 (61%), Gaps = 2/532 (0%)

Query: 27   NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            N+    ++   +  P    WN+ IRG+ +T +  EA+  Y  ++ +     +N TYP L 
Sbjct: 745  NILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNY-NLMYSQALFGNNLTYPFLL 803

Query: 87   KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
            K CA +        +   VLKLGFD D++V NA+IH +    +LG A  VFDE   R+LV
Sbjct: 804  KACARIS-NVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLV 862

Query: 147  SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
            SWNSLI G+ R     E + +F +M++  V+ D VTM+ +V AC  L +  +   +  YI
Sbjct: 863  SWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYI 922

Query: 207  SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
             E+ + + V L N L+DMY +   ++ A  +FD M ++ +VS   MI+GY K G L  AR
Sbjct: 923  EENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAAR 982

Query: 267  KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            K+FDD+P + V+ W ++I  Y QA +  +A+ LF EM  T +KPD +T    LSAC+ +G
Sbjct: 983  KLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIG 1042

Query: 327  ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            ALD G  +H +I K + N ++ +G AL+DMY KCG + K L VF EM +R+S+++T++I 
Sbjct: 1043 ALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIA 1102

Query: 387  GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
            GLA++G A  A++ FS M+  G+ P   TF+G+L AC H G+VD+G +YF  M  ++ L+
Sbjct: 1103 GLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLT 1162

Query: 447  PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
            P++KHY C+VDLL RSG L  A + I+ MPM  DVVVW  L  A ++HGN+ + E A  K
Sbjct: 1163 PEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKK 1222

Query: 507  LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
            LLE DP +SG Y+L +N Y  SN WE+  K+R++MEE  V K    SS+E+N
Sbjct: 1223 LLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIN 1274


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/555 (38%), Positives = 338/555 (60%), Gaps = 2/555 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LDY   +  ++ NP +   N  +R F         + LY  + RNG    D F++P L K
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPL-DRFSFPPLLK 123

Query: 88  VCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             + L    LG EI G   K GF   D ++ +A+I ++ +CG +  A  +FD+   R++V
Sbjct: 124 AVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVV 183

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +WN +I+G+ ++      ++L+ +M+    EPD + +  ++SACA   +L+ G+ IH +I
Sbjct: 184 TWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFI 243

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            ++G  +   +  +L++MY  CG +  A E++D + +K +V  T M+ GYAK G +  AR
Sbjct: 244 KDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDAR 303

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            IFD + EK +V W+A+I GY ++ +  EAL LF+EMQ   I PD +T +  +SAC+ +G
Sbjct: 304 FIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVG 363

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           AL    WIH + +K  F   + +  AL+DMYAKCGN+ KA +VF  MP +N ++++++I 
Sbjct: 364 ALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMIN 423

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
             A+HG A  AI+ F  M    + P+ +TF+G+L AC H GLV+EG+K+F+ M +  R+S
Sbjct: 424 AFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRIS 483

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P+ +HY CMVDL  R+  L +A +LI +MP   +V++WG+L  AC+ HG + +GE AA +
Sbjct: 484 PQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATR 543

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           LLEL+P   G  V+L+N+Y     W++ G VRK+M+ +GV K   CS IEVN  ++ F++
Sbjct: 544 LLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMM 603

Query: 567 RDKSHPELEQIYDCL 581
            D+ H + ++IY  L
Sbjct: 604 ADRYHKQSDEIYKKL 618


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 344/597 (57%), Gaps = 66/597 (11%)

Query: 16  LIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG 74
           LI  C  S     L Y T +   +Q PN   WN  IRG   +     ++ LY  M+ + G
Sbjct: 1   LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMV-SLG 59

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV--------- 125
             P+++T+P L K CA       G +I G VLKLGFD+D+YVH ++I ++V         
Sbjct: 60  LLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAY 119

Query: 126 ----------------------SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
                                 S GD+  A  +FDE  V+++VSWN++I+G+  +G  +E
Sbjct: 120 KVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKE 179

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+ LF +M    V PDE T + ++SACA    + LGR++H ++ + G    + + NAL+D
Sbjct: 180 ALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALID 239

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           +Y KCG++E+A              C                  +F  L  K V+ WN +
Sbjct: 240 LYSKCGEVETA--------------C-----------------GLFQGLSYKDVISWNTL 268

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK--E 341
           IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+D G WIH +I+K  +
Sbjct: 269 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 328

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
                  L T+L+DMYAKCG+I  A QVF+ M  ++  ++ A+I G A+HG+A  +   F
Sbjct: 329 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLF 388

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           S M  +G+ PD+ITF+G+LSAC H G++D GR  F  M+  ++++PKL+HY CM+DLLG 
Sbjct: 389 SRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGH 448

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           SGL +EAE++I +M M  D V+W +L  AC++HGNV + E  A  L++++P++   Y+LL
Sbjct: 449 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILL 508

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +N+Y  +  WE+  ++R ++  + ++K PGCSSIEV+ +++EF+V DK HP+  +IY
Sbjct: 509 SNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIY 565


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 353/619 (57%), Gaps = 68/619 (10%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNP---NSFSWNVAIRGFLETGKMR 60
           TGL +  F  S+LI FCA+S S +L Y   +    Q     N F WN  IRG+  +    
Sbjct: 54  TGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPL 113

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            ++ L+ +ML  G  +P++ T+P LFK C        G ++  H LKL    + +VH +V
Sbjct: 114 SSLHLFSRMLYYG-VQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSV 172

Query: 121 IHVFVSCGDLGLACNVFDESCVRN-------------------------------LVSWN 149
           IH++ S G++  A  VFD+S +R+                               +VSWN
Sbjct: 173 IHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWN 232

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+G+V+SG   EAI  F +MQ   V P++ TM+ ++SAC       LG+ I  ++ ++
Sbjct: 233 AMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDN 292

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G    + L NAL+DMY KCG+                                DIAR++F
Sbjct: 293 GFGSNLQLTNALIDMYCKCGET-------------------------------DIARELF 321

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D + EK V+ WN +IGGY      +EALALF  M  + +KP+ VT +  L AC+ LGALD
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALD 381

Query: 330 DGIWIHRFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
            G W+H +I+K   N  N  L T+L+DMYAKCG I  A +VF  M  RN  ++ A++ G 
Sbjct: 382 LGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGF 441

Query: 389 ALHGKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           A+HG A  A++ FSEM+  GL  PD+ITF+G+LSAC   GLVD G +YF  M   + +SP
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISP 501

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           KL+HY CM+DLL R+   EEAE L+++M M  D  +WG+L  AC+ HG V  GE  A +L
Sbjct: 502 KLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERL 561

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
            +L+P+++G +VLL+N+Y  +  W++  ++R  + ++G++K PGC+SIE++G ++EF+V 
Sbjct: 562 FQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVG 621

Query: 568 DKSHPELEQIYDCLVQLTR 586
           DK HPE   IY  L ++ +
Sbjct: 622 DKFHPECNNIYKMLNEVDK 640



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 129/409 (31%), Positives = 220/409 (53%), Gaps = 9/409 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIH--VFVSCGDLGLACNVFDESCVR---NLVSWNSLING 154
           +I   ++K G +  ++V + +IH       GDL  A ++F+E+      N+  WNSLI G
Sbjct: 46  QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRG 105

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           +  S  P  ++ LF  M    V+P+  T   +  +C + +  + G+++H +  +  L   
Sbjct: 106 YSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFN 165

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             +  +++ MY   G+++ A  +FD    +  VS T +I GY   G LD AR++FD++P 
Sbjct: 166 PHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPV 225

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K VV WNA+I GYVQ+ R +EA+  F+EMQ   + P+  T V  LSAC    + + G WI
Sbjct: 226 KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWI 285

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
             ++    F  N+ L  AL+DMY KCG    A ++F  + E++ +++  +IGG +     
Sbjct: 286 GSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLY 345

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +A++ F  M+   + P+++TFLGIL AC   G +D G+   A +    R S     ++ 
Sbjct: 346 EEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTS 405

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           ++D+  + G +E AE++ RSM  + ++  W A+     +HG+    ERA
Sbjct: 406 LIDMYAKCGCIEAAERVFRSM-HSRNLASWNAMLSGFAMHGH---AERA 450


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 350/619 (56%), Gaps = 67/619 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+L+  C +S     L Y   +    Q PN   WN  +RG   +  +
Sbjct: 5   MVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDL 64

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
              +++Y +M+  G   P+ +T+P L K CA       G +I   V+KLG ++D Y H +
Sbjct: 65  VSPLEMYVRMVSXGHV-PNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTS 123

Query: 120 VIHVF---------------------VSC----------GDLGLACNVFDESCVRNLVSW 148
           +I ++                     VSC          GD+  A  VFD    R++VSW
Sbjct: 124 LISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSW 183

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I G+V +    EA+ LF++M    V PDE T++ ++SACAQ   + LGREIH  + +
Sbjct: 184 NAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDD 243

Query: 209 S-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
             G   ++ + NA + +Y KCG +E                               IA  
Sbjct: 244 HHGFGSSLKIVNAFIGLYSKCGDVE-------------------------------IASG 272

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F+ L  K VV WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA
Sbjct: 273 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 332

Query: 328 LDDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           +D G WIH +I+K  +       L T+L+DMYAKCG+I  A QVF+ M  ++  ++ A+I
Sbjct: 333 IDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMI 392

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G A+HG+A  A   FS M   G+ PD+IT +G+LSAC H GL+D GR  F  ++  + +
Sbjct: 393 FGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNI 452

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
           +PKL+HY CM+DLLG +GL +EAE++I  MPM  D V+W +L  AC++HGN+ + E  A 
Sbjct: 453 TPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQ 512

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           KL+E++P++SG YVLL+N+Y  +  WE+  ++R+++  +G++K PGCSSIE++ +++EFI
Sbjct: 513 KLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFI 572

Query: 566 VRDKSHPELEQIYDCLVQL 584
           + DK HP+  +IY  L ++
Sbjct: 573 IGDKLHPQSREIYRMLEEM 591


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 340/557 (61%), Gaps = 14/557 (2%)

Query: 2   TITGLI-SHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           TI  LI S+  +PS ++      ++ NL         +  P    WN+ IRG+  + +  
Sbjct: 12  TIYNLIKSYALSPSTIL------KAHNL------FQQIHRPTLPFWNIMIRGWSVSDQPN 59

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ +Y  M R G    +N TY  LFK CA +     G  I   VLKLGF+  +YV NA+
Sbjct: 60  EAIRMYNLMYRQG-LLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNAL 118

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I+++ SCG LGLA  VFDE   R+LVSWNSL+ G+ +    RE + +F  M++  V+ D 
Sbjct: 119 INMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDA 178

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+ +V AC  L +  +   +  YI E+ + + V L N L+DMY + G +  A  +FD 
Sbjct: 179 VTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQ 238

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + +VS   MI+GY K G L  AR++FD + ++ V+ W  +I  Y QA +  EAL LF
Sbjct: 239 MQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLF 298

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EM  + +KPD +T    LSAC+  G+LD G   H +I+K +   ++ +G AL+DMY KC
Sbjct: 299 KEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKC 358

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G + KAL+VF EM +++S+++T+II GLA++G A  A+ YFS M+   + P    F+GIL
Sbjct: 359 GVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGIL 418

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
            AC H GLVD+G +YF  M  ++ L P++KHY C+VDLL RSG L+ A + I+ MP+  D
Sbjct: 419 LACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPD 478

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           VV+W  L  A ++HGN+ + E A  KLLELDP +SG YVL +N Y  SN WE+A K+R++
Sbjct: 479 VVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMREL 538

Query: 541 MEERGVEKTPGCSSIEV 557
           ME+  V+K  G S IE+
Sbjct: 539 MEKSNVQKPSGSSCIEM 555


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 329/545 (60%), Gaps = 1/545 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  S+N  + G+++ GK  EA++LY  M    G +PD FT+  L  +CA+      G +I
Sbjct: 442 NEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 501

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             H+++     ++ V   ++H++  CG L  A  +F+    RN  SWNS+I G+ ++G  
Sbjct: 502 HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGET 561

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EA+RLF+ MQL  ++PD  ++  M+S+C  L D   GRE+H +I  + +     L   L
Sbjct: 562 QEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVL 621

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG ++ A +++D  + K V+    M+  +   G  + A+ +FD + ++    WN
Sbjct: 622 VDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWN 681

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           +I+ GY      KE+   F EM  + I+ D +T V  ++ CS L AL+ G  +H  I K+
Sbjct: 682 SILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKK 741

Query: 342 NF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
            F N +VVL TALVDMY+KCG I KA  VF  M  +N +++ A+I G + HG + +A+  
Sbjct: 742 GFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALIL 801

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           + EM   G+ P+E+TFL ILSAC H GLV+EG + F  M   + +  K +HY+CMVDLLG
Sbjct: 802 YEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLG 861

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G LE+A++ +  MP+  +V  WGAL  ACR+H ++ +G  AA +L ELDPQ+ G YV+
Sbjct: 862 RAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVI 921

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           ++N+Y  +  W+E   +R+MM+ +GV+K PG S IE+N  +  F    K+HP+ E+IY+ 
Sbjct: 922 MSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNN 981

Query: 581 LVQLT 585
           L  LT
Sbjct: 982 LRHLT 986



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 208/408 (50%), Gaps = 33/408 (8%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D     L  ++  +  +WN  I G+++     EA  ++ +ML+ G   PDNFT+    +
Sbjct: 226 MDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIG-VCPDNFTFASALR 284

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           VC +L  R  G ++   ++  GF  D +V NA+I ++  C D      VFDE   RN V+
Sbjct: 285 VCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVT 344

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS+I+   + G   +A+ LF  MQ    + +   +  ++ A A L D+  GRE+H ++ 
Sbjct: 345 WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV 404

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
            + L   + L +AL+DMY KCG +E A ++F S++ +  VS   ++ G            
Sbjct: 405 RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAG------------ 452

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLG 326
                              YVQ  +++EAL L+H+MQ+  GI+PD  T    L+ C+   
Sbjct: 453 -------------------YVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQR 493

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
             + G  IH  + + N   N+++ T LV MY++CG +  A ++F+ M ERN+ ++ ++I 
Sbjct: 494 NDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIE 553

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           G   +G+  +A+  F +M   G+ PD  +   +LS+C       +GR+
Sbjct: 554 GYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 147/560 (26%), Positives = 252/560 (45%), Gaps = 55/560 (9%)

Query: 4   TGLISHGFAP-----SRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETG 57
           T +IS+G+ P     ++++   A S    +L Y  K+   +   N  +WN  I  +    
Sbjct: 95  TQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVD 154

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL----GLRFLGYEIFGHVLKLGFDVD 113
              E + LY +M R  G   D FT+P + K C ++    G+R    ++   V+K G + +
Sbjct: 155 DYMEVLRLYGRM-RGSGNFSDKFTFPSVIKACIAMEDMGGVR----QLQSSVVKAGLNCN 209

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
           ++V  A++  +   G +  A    DE    ++V+WN++I G+V+     EA  +F  M  
Sbjct: 210 LFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLK 269

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
             V PD  T    +  C  L   + G+++H  +   G      + NAL+DMY KC   ES
Sbjct: 270 IGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEES 329

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
                                            K+FD++ E+  V WN+II    Q    
Sbjct: 330 C-------------------------------LKVFDEMGERNQVTWNSIISAEAQFGHF 358

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            +AL LF  MQ +G K +       L A + L  +  G  +H  + +   N +++LG+AL
Sbjct: 359 NDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSAL 418

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPD 412
           VDMY+KCG + +A QVF  + ERN ++Y A++ G    GKA +A+  + +M    G+ PD
Sbjct: 419 VDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPD 478

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           + TF  +L+ C +    ++GR+  A +     ++  +   + +V +    G L  A+++ 
Sbjct: 479 QFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYAKEIF 537

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQDSGIYVLLAN--MYRDS 528
             M    +   W ++    + +G      R    M+L  + P    +  +L++     DS
Sbjct: 538 NRMA-ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDS 596

Query: 529 NMWEEAGK--VRKMMEERGV 546
               E     VR  MEE G+
Sbjct: 597 QKGRELHNFIVRNTMEEEGI 616



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 191/404 (47%), Gaps = 68/404 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           SE   L+Y  +I   +   N++SWN  I G+ + G+ +EA+ L+KQM  N G +PD F+ 
Sbjct: 525 SECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN-GIKPDCFSL 583

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDMY------------------ 115
             +   C SL     G E+   +++   +         VDMY                  
Sbjct: 584 SSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIK 643

Query: 116 ----VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
               ++N ++  FV+ G    A N+FD+   RN   WNS++ G+   G  +E+   F +M
Sbjct: 644 KDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEM 703

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKCGK 230
               +E D +TM+ +V+ C+ L  L  G ++H  I + G +  +V L  AL+DMY KCG 
Sbjct: 704 LESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGA 763

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +  A  +FD+M  K +VS   MI GY+K G                              
Sbjct: 764 ITKARTVFDNMNGKNIVSWNAMISGYSKHGC----------------------------- 794

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
             SKEAL L+ EM   G+ P+ VT +  LSACS  G +++G+ I   ++ E++N+     
Sbjct: 795 --SKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQ-EDYNIEAKAE 851

Query: 351 --TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
             T +VD+  + G +  A +   +MP E    T+ A++G   +H
Sbjct: 852 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVH 895



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 209/465 (44%), Gaps = 43/465 (9%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMR-EAVDLYKQMLRNGGTRPDNFTYPL----LF 86
           ++  F + NPNS S++        T K++    D  K    +  T+P +   PL    L 
Sbjct: 21  SRHFFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIH--TKPASDVNPLPYSSLI 78

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG---DLGLACNVFDESCVR 143
           + C        G  I   ++  G++ D Y+   ++ ++   G   DL  A  +F+E   R
Sbjct: 79  QDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPER 138

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           NL +WN++I  + R     E +RL+  M+      D+ T   ++ AC  +ED+   R++ 
Sbjct: 139 NLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQ 198

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
             + ++GL   + +  AL+D                               GYA+FG++D
Sbjct: 199 SSVVKAGLNCNLFVGGALVD-------------------------------GYARFGWMD 227

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A    D++    VV WNA+I GYV+    +EA  +F  M   G+ PD  T    L  C 
Sbjct: 228 DAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCG 287

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            L + D G  +H  +    F  +  +G AL+DMYAKC +    L+VF EM ERN +T+ +
Sbjct: 288 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 347

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           II   A  G   DA+  F  M   G   +      IL A      + +GR+    +    
Sbjct: 348 IISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL 407

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            L+  +   S +VD+  + G++EEA Q+ RS+ +  + V + AL 
Sbjct: 408 -LNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALL 450


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/533 (40%), Positives = 336/533 (63%), Gaps = 36/533 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +N  + G+    + + A  +Y++++++G   PD FT+P + K CA       G ++ G +
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDG-FLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +K+GF  ++YV N+++H +  C   G A  VFDE  VR++VSW  +I+G+VR+G   EA+
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LF  M    VEP+  T + ++ AC +   L++G+ IH    +S   + + ++NALMDMY
Sbjct: 121 GLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMY 177

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           VKCG L  A                               +++FD+L EK +V W +II 
Sbjct: 178 VKCGCLPGA-------------------------------KQVFDELAEKDIVSWTSIIS 206

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           G VQ    KEAL LF +MQ++GI+PD +     LSAC++LGALD G W+H  I+++    
Sbjct: 207 GLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKW 266

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           ++ +GTA+VDMYAKCG I  ++Q+F+ MP +N LT+ A++ GLA+HG A   +  F EM+
Sbjct: 267 DIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMV 326

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS-SIFRLSPKLKHYSCMVDLLGRSGL 464
            VG+ P+E+TFL IL+ACCH GLV+EGR+YF  M    + L P+L+HY CMVDLL R+ L
Sbjct: 327 RVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARL 386

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L+EA +L ++MPM+ DV + GAL  AC+ +GN  + +    + +ELD  DSG+YVLL+N+
Sbjct: 387 LDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNI 446

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +  +  W++  ++R++M+E+G++K PG + IE++G  +EFIV D  HP+ ++I
Sbjct: 447 HAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHEFIVGDTRHPQDKRI 499



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 182/372 (48%), Gaps = 39/372 (10%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G + + +  + L+ F ++   K     +++   +   +  SW   I G++  G   EAV 
Sbjct: 64  GFVCNIYVENSLVHFYSVC--KRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M       P+  T+  +   C   G   +G  I G   K  F V + V NA++ ++
Sbjct: 122 LFLRM----DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMY 177

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
           V CG L  A  VFDE   +++VSW S+I+G V+   P+EA+ LF+DMQ   +EPD + + 
Sbjct: 178 VKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILT 237

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++SACA+L  L+ GR +H +I    +   + +  A++DMY KCG +E + +IF+ M   
Sbjct: 238 SVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGM--- 294

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
                                       P K V+ WNA++ G      + + L LF EM 
Sbjct: 295 ----------------------------PHKNVLTWNALLNGLAMHGHAYKVLELFEEMV 326

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGN 362
             G++P+ VT +  L+AC   G +++G     +++ + +NL   L     +VD+  +   
Sbjct: 327 RVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARL 386

Query: 363 IAKALQVFHEMP 374
           + +AL++   MP
Sbjct: 387 LDEALELTKAMP 398



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 14/241 (5%)

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           P+NA++ GY    R K A  ++  +   G  PD  T    L +C++   + +G  +H  I
Sbjct: 1   PFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K  F  N+ +  +LV  Y+ C     A +VF EM  R+ +++T +I G    G   +A+
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVD 457
             F  M    + P+  TF+ +L AC   G +  G+        S F +   L+  + ++D
Sbjct: 121 GLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVG--LEVSNALMD 175

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG-ERAAMKLLELDPQDSG 516
           +  + G L  A+Q+   +    D+V W ++     + G V     + A++L + D Q SG
Sbjct: 176 MYVKCGCLPGAKQVFDELA-EKDIVSWTSI-----ISGLVQCNCPKEALELFQ-DMQSSG 228

Query: 517 I 517
           I
Sbjct: 229 I 229


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/554 (41%), Positives = 348/554 (62%), Gaps = 8/554 (1%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           +Q P+   +N  ++   +     + + L+ + LR  G  PDNFT P++ K    L     
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIE 64

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G ++ G+ +K G + D YV N+++ ++ S G + +   VFDE   R++VSWN LI+ +V 
Sbjct: 65  GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124

Query: 158 SGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           +G   +AI +F+ M  E  ++ DE T++  +SAC+ L++L +G  I+ ++  +   ++V 
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + NAL+DM+ KCG L+ A  +FDSM +K V   T+M+ GY   G +D AR +F+  P K 
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKD 243

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV W A++ GYVQ  R  EAL LF  MQ  GI+PD    V  L+ C+Q GAL+ G WIH 
Sbjct: 244 VVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHG 303

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +I +    ++ V+GTALVDMYAKCG I  AL+VF+E+ ER++ ++T++I GLA++G +  
Sbjct: 304 YINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGR 363

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  + EM  VG+  D ITF+ +L+AC HGG V EGRK F  M+    + PK +H SC++
Sbjct: 364 ALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLI 423

Query: 457 DLLGRSGLLEEAEQLIRSMPMAAD---VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           DLL R+GLL+EAE+LI  M   +D   V V+ +L  A R +GNV I ER A KL +++  
Sbjct: 424 DLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVS 483

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK--SH 571
           DS  + LLA++Y  +N WE+   VR+ M++ G+ K PGCSSIE++G+ +EFIV D   SH
Sbjct: 484 DSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSH 543

Query: 572 PELEQIYDCLVQLT 585
           P++++I   L Q T
Sbjct: 544 PKMDEINSMLHQTT 557



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 171/373 (45%), Gaps = 64/373 (17%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SWN  I  ++  G+  +A+ ++K+M +    + D  T       C++L
Sbjct: 102 KVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSAL 161

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD-------------- 138
               +G  I+  V+   F++ + + NA++ +F  CG L  A  VFD              
Sbjct: 162 KNLEIGERIYRFVVT-EFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220

Query: 139 -----------------ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
                             S V+++V W +++NG+V+     EA+ LFR MQ   + PD  
Sbjct: 221 FGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNF 280

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            ++ +++ CAQ   L  G+ IH YI+E+ +T+   +  AL+DMY KCG +E+A E+F  +
Sbjct: 281 VLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEI 340

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             +   S T++I G A  G                                S  AL L++
Sbjct: 341 KERDTASWTSLIYGLAMNGM-------------------------------SGRALDLYY 369

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKC 360
           EM+  G++ DA+T V  L+AC+  G + +G  I H   E+ N        + L+D+  + 
Sbjct: 370 EMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRA 429

Query: 361 GNIAKALQVFHEM 373
           G + +A ++  +M
Sbjct: 430 GLLDEAEELIDKM 442


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 338/574 (58%), Gaps = 39/574 (6%)

Query: 13  PSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE-AVDLYKQMLR 71
           P        I + K+L Y + +   +  PN +++NV +RG   T K  +  V+LY + L+
Sbjct: 62  PKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYK-LK 120

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH--VLKLGFDVDMYVHNAVIHVFVSCGD 129
           + G + +NFTYP LF  C ++  R L +   GH  V K G D D YV++++I ++  CG+
Sbjct: 121 SLGLKANNFTYPFLFIACGNV--RGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGE 178

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +G A  VFDE   R+LVSWNS+I+G+ + GF +EAI LF +M+ E  EPDE+T++ ++ A
Sbjct: 179 MGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGA 238

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C  L DL LGR +  ++ E  + +   + +AL+DMY KCG L SA               
Sbjct: 239 CGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISA--------------- 283

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                           R++FD +P K VV WNAII GY Q   S EA+ LF+ M+  G  
Sbjct: 284 ----------------RRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH 327

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD VT +  LSACS +GALD G W+     ++    +V + +AL+DMYAKCG++  A++V
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRV 387

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG--LMPDEITFLGILSACCHGG 427
           F  MP +N +++ A+I  LA HG+A +A+S F  M      + P++ITF+G+LSAC H G
Sbjct: 388 FESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAG 447

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LVDEGR+ F  M+  F L PK++HYSCMVDL  R+GLL EA  LI+ MP   D +V G+L
Sbjct: 448 LVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSL 507

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             AC+   N  +GER     LE++  +SG YV+ + +Y +   W+++ K+R +M + GV 
Sbjct: 508 LGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVS 567

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           KTPGCS I++   ++EF   D  H     IY  L
Sbjct: 568 KTPGCSWIDIGAHVHEFHAGDSLHNHSMNIYQLL 601


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/550 (40%), Positives = 340/550 (61%), Gaps = 6/550 (1%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDL--YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           N F WN  IR  +E G +     L  Y Q LR  G RP+  T+  L K   S      G 
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLR-AGLRPNGHTFMYLLKALVSGQEVKEGE 111

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           E+   V++ GF    +V  A++  +V+CG +G    VFDE     LV W  +I  +V   
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVT 171

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           FP +A+ LFR M+   + PD V +  +VSAC  L DL + + +H +I +SG+ +   +++
Sbjct: 172 FPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSS 231

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+  Y +CG L+ A   F     K +V   TMI    +   L++ +++F  +P++ VV 
Sbjct: 232 TLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVS 291

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN++IGG+ +  + +EAL  FHEM+ +G+ P+A+T +  LSAC+  GALD G WIH +++
Sbjct: 292 WNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVD 351

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K + N +  L ++L+DMY+KCG+I KA+Q+F E   R+  T+T+I+ GLA+HG+   A+ 
Sbjct: 352 KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALH 411

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
           YFS+M    + PD++T +G+LSAC H GL+D+G  YF  M  +F L PK++HY CMVDLL
Sbjct: 412 YFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLL 471

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
           GR G L+EA  LI  MPM A+ ++WGA   ACR+H NV +GE AA +LL LDP+D    V
Sbjct: 472 GRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARV 531

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP---ELEQ 576
           +L+NMY +   W+ +  +RK ++++G++K+PGCSSIEVNG ++ F+V D SHP   E+  
Sbjct: 532 MLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINS 591

Query: 577 IYDCLVQLTR 586
           + + + +L R
Sbjct: 592 MVEKIEKLMR 601



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           E  NL+   ++  ++ + +  SWN  I GF   G+ +EA+  + +M    G  P+  T  
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM-EFSGVSPNALTLL 328

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                CAS G    G  I  +V K   + D  + +++I ++  CGD+  A  +F+ES  R
Sbjct: 329 STLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRR 388

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +L +W S++ G    G   +A+  F  M+  +V+PD+VTM+G++SACA    L+ G    
Sbjct: 389 DLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG---- 444

Query: 204 WYISES-----GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           W+  +S     GL   V     ++D+  + G L+ A ++   M
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGM 487


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 333/560 (59%), Gaps = 32/560 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +DY   I  ++  P S ++NV IRG         A+ L+K+M      + D FT+  + K
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKM-HEKSVQHDKFTFSSVLK 129

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ +     G ++   +LK GF  + +V N +I ++ +CG +G+A +VFD    R++V+
Sbjct: 130 ACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA 189

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS+++G+ ++G   E ++LFR +   R+E D+VTMI ++ AC +L +L +G  I  YI 
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
             GL     L  +L+DMY KC                               G +D ARK
Sbjct: 250 SKGLRRNNTLTTSLIDMYAKC-------------------------------GQVDTARK 278

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD++ ++ VV W+A+I GY QA R KEAL LFHEMQ   + P+ VT V  L +C+ LGA
Sbjct: 279 LFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGA 338

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G W+H +I+K+   L V LGT L+D YAKCG I ++++VF EM  +N  T+TA+I G
Sbjct: 339 YETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQG 398

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA +G+   A+ +FS M+   + P+++TF+G+LSAC H  LVD+GR  F  M   F + P
Sbjct: 399 LANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEP 458

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           +++HY CMVD+LGR+G LEEA Q I +MP   + VVW  L  +CR H N+ + E++   +
Sbjct: 459 RIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHI 518

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             L+P  SG Y+LL+N Y      E+A +VR +++E+ ++K PGCS IE++G+++EF   
Sbjct: 519 TRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSE 578

Query: 568 DKSHPELEQIYDCLVQLTRH 587
           D  H   ++I+D L ++ + 
Sbjct: 579 DGEHKHSKEIHDALDKMMKQ 598



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 122/260 (46%), Gaps = 12/260 (4%)

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           L     + D ++ + V+    +++       +D A  IF+ + +     +N +I G    
Sbjct: 44  LLKTRRLLDPIITEAVLESAALLLP----DTIDYALSIFNHIDKPESSAYNVMIRGLAFK 99

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
           +    AL LF +M    ++ D  T    L ACS++ AL +G  +H  I K  F  N  + 
Sbjct: 100 RSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVE 159

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
             L+ MYA CG I  A  VF  MPER+ + + +++ G   +G   + +  F +++ + + 
Sbjct: 160 NTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIE 219

Query: 411 PDEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
            D++T + +L AC     ++ G    +Y   +S   R +  L   + ++D+  + G ++ 
Sbjct: 220 FDDVTMISVLMACGRLANLEIGELIGEYI--VSKGLRRNNTLT--TSLIDMYAKCGQVDT 275

Query: 468 AEQLIRSMPMAADVVVWGAL 487
           A +L   M    DVV W A+
Sbjct: 276 ARKLFDEMD-KRDVVAWSAM 294


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/512 (41%), Positives = 332/512 (64%), Gaps = 4/512 (0%)

Query: 74  GTRPDNFTYPLLFKVCASLGLR-FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           G RPD +T+P L K   +   R  +G  +  HV+K G +++ +V ++++ ++ + GD  +
Sbjct: 13  GARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAV 72

Query: 133 ACNVFDESCVR---NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           A  + D    R     V WN+LI+G  RS   R +   F DM    V P  VT I ++SA
Sbjct: 73  ARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSA 132

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C + + + LG ++H  +  SG+   + + NAL+DMY +C ++++A E+F+ M  +  VS 
Sbjct: 133 CGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSW 192

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T++I G+ + G +D AR +FD +PE+  V W A+I GYVQA + +EAL +F EMQ + ++
Sbjct: 193 TSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVR 252

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D  T V  ++AC+QLGAL+ G W   ++ +    ++  +G ALVDMY+KCG+I +AL V
Sbjct: 253 ADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGV 312

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F EM  R+  T+TA+I GLA++G   +AI+ F  M+ V   PDE+TF+G+L+AC H GLV
Sbjct: 313 FKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLV 372

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           D+GR +F  M+  + ++P + H+ C++DLLGR+G L+EA + I +MPM  +  +WG L  
Sbjct: 373 DKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLA 432

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+HGN  IG+ AA  LLELD ++  +Y+LL+N+Y  SN WE+  ++R+++ E+G++K 
Sbjct: 433 ACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKE 492

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           PGCS IE+NG ++EFI  D+SHP  ++IY  L
Sbjct: 493 PGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKL 524



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 3/211 (1%)

Query: 33  KILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           + LF+ +   ++ SW   I G+++ G+ REA++++++M +    R D FT   +   CA 
Sbjct: 209 RTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREM-QFSKVRADEFTMVSVVTACAQ 267

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
           LG    G     ++ + G  +D +V NA++ ++  CG +  A  VF E  +R+  +W ++
Sbjct: 268 LGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAV 327

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-G 210
           I G   +G   EAI +F  M      PDEVT IG+++AC     ++ GR+    ++ S G
Sbjct: 328 ILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYG 387

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +   V     L+D+  + GKL+ A E   +M
Sbjct: 388 IAPNVMHFGCLIDLLGRAGKLKEALETIGNM 418


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 334/557 (59%), Gaps = 34/557 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-----GLRFLGY 99
           SWN  I  ++  G  REA+DL+ +ML +G   PD  T   L   CA L     G R   Y
Sbjct: 201 SWNTMISCYVLKGMYREALDLFDEMLVSG-VLPDEITMVSLVSTCAKLKDLEMGKRLHLY 259

Query: 100 ------EIFGHVLKLGFD----------------------VDMYVHNAVIHVFVSCGDLG 131
                  I G +L    D                      VD+ +   ++  +V    + 
Sbjct: 260 IVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKID 319

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
            A  +FD+   R+LVSW ++++G+V+ G+  E++ LF+ M+ E V PDEV ++ ++SAC 
Sbjct: 320 KARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACV 379

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
            LED +LGR +H +I   G+ +   L NAL+D+Y KCGKL+ A   F+ +  K+  S  +
Sbjct: 380 HLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNS 439

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           M+ G+ + G +D AR  F+ +PEK +V WN ++  YV+     E+  +F +MQ++ +KPD
Sbjct: 440 MLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPD 499

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
             T +  LS+C+++GAL+ GIW++ +IEK    ++ +LGTAL+DMY KCG +  A ++F 
Sbjct: 500 KTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFT 559

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           ++ E+N   +TA++   A+ G+AL+AI  + EM   G+ PD +TF+ +L+AC HGGLVDE
Sbjct: 560 QIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDE 619

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G KYF ++ S + + P + HY CMVDLLGR G LEE  + I  MP+  DV +W +L  AC
Sbjct: 620 GYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRAC 679

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R H NV + E+A  +L+E+DP ++G +VLL+N+Y D+  W++  KVR  + E GV K PG
Sbjct: 680 RSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPG 739

Query: 552 CSSIEVNGLLYEFIVRD 568
            + IE NG+++EF+  +
Sbjct: 740 FTMIEQNGVVHEFVASN 756



 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 275/533 (51%), Gaps = 46/533 (8%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +    LI      S+++AF  +    NLD   +IL     P S  WN  +   L+ G  +
Sbjct: 58  LITANLIHDPEITSQVLAF--LLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQ 115

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           E ++ Y  M+  G     +  + L+   C +  ++ LG E+ G +LK GF  +  ++N +
Sbjct: 116 EVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVK-LGSEVHGRILKCGFGRNKSLNNNL 174

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++  CG L   C +F++   R+++SWN++I+ +V  G  REA+ LF +M +  V PDE
Sbjct: 175 MGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDE 234

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-- 238
           +TM+ +VS CA+L+DL +G+ +H YI ++ L +   L N L+DMY KCGK++ A  +   
Sbjct: 235 ITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSR 294

Query: 239 --DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
             +S V+  VV  TT++ GY K   +D AR++FD + E+ +V W  ++ GYVQ     E+
Sbjct: 295 CDESEVD--VVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCES 352

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L LF +M+   + PD V  V  LSAC  L   D G  +H FI      ++  LG AL+D+
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDL 412

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG---KALD----------------- 396
           YAKCG + +AL+ F ++P +++ ++ +++ G    G   KA D                 
Sbjct: 413 YAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMV 472

Query: 397 -----------AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG--RKYFAQMSSIF 443
                      +   F +M    + PD+ T + +LS+C   G ++ G     + + + I 
Sbjct: 473 NAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEI- 531

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            +   L   + ++D+ G+ G +E A ++   + +  +V VW A+  A  + G 
Sbjct: 532 GIDAMLG--TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAMEGQ 581



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 202/480 (42%), Gaps = 69/480 (14%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I  H++      D  + + V+   +S  +L  A  +   S     + WN+L+   ++ G 
Sbjct: 54  IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGC 113

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           P+E +  +  M  + V  D  T   ++ AC +  D+ LG E+H  I + G      L N 
Sbjct: 114 PQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNN 173

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           LM +Y KCGKL+   ++F+ M ++ V+S  TMI  Y   G                    
Sbjct: 174 LMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMY------------------ 215

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                        +EAL LF EM  +G+ PD +T V  +S C++L  L+ G  +H +I  
Sbjct: 216 -------------REALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVD 262

Query: 341 ENFNLNVVLGTALVDMYAKCG---------------------------------NIAKAL 367
               +   L   LVDMY+KCG                                  I KA 
Sbjct: 263 NKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKAR 322

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           Q+F +M ER+ +++T ++ G    G   +++  F +M    ++PDE+  + +LSAC H  
Sbjct: 323 QLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLE 382

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             D GR   A + +   L       + ++DL  + G L+EA +    +P  +    W ++
Sbjct: 383 DFDLGRSVHAFIVTYGMLVDGFLG-NALLDLYAKCGKLDEALRTFEQLPCKS-AASWNSM 440

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
                  G V        K+ E   +D   +  + N Y   +++ E+ ++   M+   V+
Sbjct: 441 LDGFCRSGGVDKARDFFNKIPE---KDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 4/179 (2%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S L  FC    S  +D        +   +  SWN  +  +++     E+ +++ +M ++ 
Sbjct: 439 SMLDGFC---RSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM-QSS 494

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
             +PD  T   L   CA +G    G  +  ++ K    +D  +  A+I ++  CG + +A
Sbjct: 495 NVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMA 554

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
             +F +   +N+  W +++  +   G   EAI L+ +M+   V+PD VT I +++AC+ 
Sbjct: 555 YEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSH 613


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/533 (39%), Positives = 322/533 (60%), Gaps = 31/533 (5%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +NV +R  L  G   +A+ L+ +ML      PD  T     K C+ +    +G  I  + 
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +K G   D +V +++IH++ SC D+  A  +FD      +V WN++I  ++++G   E +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            +F+ M    V  DE+T++ +V+AC ++ D  LG+ +  Y+ E GL     L  AL+DMY
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KCG+                               L  AR++FD +  + VV W+A+I 
Sbjct: 266 AKCGE-------------------------------LGKARRLFDGMQSRDVVAWSAMIS 294

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY QA + +EALALF EMQ   ++P+ VT V  LSAC+ LGAL+ G W+H +I ++  +L
Sbjct: 295 GYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSL 354

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
            ++LGTALVD YAKCG I  A++ F  MP +NS T+TA+I G+A +G+  +A+  FS M 
Sbjct: 355 TIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMR 414

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
              + P ++TF+G+L AC H  LV+EGR++F  M+  + + P+ +HY C+VDLLGR+GL+
Sbjct: 415 KASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLI 474

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           +EA Q IR+MP+  + V+W AL  +C +H NV IGE A  +++ L+P  SG Y+LL+N+Y
Sbjct: 475 DEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIY 534

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
                W+ A  +RK M++RG+EKTPGCS IE++G++ EF   D  HP+L++IY
Sbjct: 535 ASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIY 587



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 1/160 (0%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +Q+ +  +W+  I G+ +  + REA+ L+ +M +     P++ T   +   CA L
Sbjct: 276 RLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEM-QLAEVEPNDVTMVSVLSACAVL 334

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  +  ++ +    + + +  A++  +  CG +  A   F+   V+N  +W +LI
Sbjct: 335 GALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI 394

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
            G   +G  REA+ LF  M+   +EP +VT IG++ AC+ 
Sbjct: 395 KGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSH 434



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 34/160 (21%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS++W   I+G    G+ REA++L+  M R     P + T+  +   C+   L   G   
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSM-RKASIEPTDVTFIGVLMACSHSCLVEEGRRH 444

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
           F  + +                     D G+        CV +L+          R+G  
Sbjct: 445 FDSMTQ---------------------DYGIKPRAEHYGCVVDLLG---------RAGLI 474

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            EA +  R M    +EP+ V    ++S+CA  +++ +G E
Sbjct: 475 DEAYQFIRTMP---IEPNAVIWRALLSSCAVHKNVEIGEE 511


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/567 (40%), Positives = 326/567 (57%), Gaps = 33/567 (5%)

Query: 21  AISESKNLDYCTKILFNV-QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN 79
            I+ S N  Y   +      N N+F +N  IRG +   +   AV LY  M       PD+
Sbjct: 46  TINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASM-HKAAIVPDS 104

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
           FT+  + K CA L L  LG  I   V K GFD D++V   V+  +  CG L  A  VFD+
Sbjct: 105 FTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDD 164

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
             V+N+VSW  +I G +  G  REA+ LFR +    + PD   ++ ++ ACA+L DL  G
Sbjct: 165 MVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG 224

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           R I   + E GL+  V +A +L+DMY KCG +E                           
Sbjct: 225 RWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEE-------------------------- 258

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
                AR +FD + EK +V W+A+I GY      +EA+ LF EM+   ++PD    V  L
Sbjct: 259 -----ARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGAL 313

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           S+C+ LGAL+ G W    +  E F  N VLGT+L+D YAKCG++ +AL V+  M E++ +
Sbjct: 314 SSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRV 373

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
            + A+I GLA++G+   A   F +M   G+ P+E TF+G+L  C H GLVD+GR YF  M
Sbjct: 374 VFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSM 433

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
           S  F ++P ++HY CMVDLL R+G L+EA  LI+ MPM A+V+VWG+L   CRLH    +
Sbjct: 434 SHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQL 493

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
            E    +L+EL+P +SG YVLL+N+Y  S  W+EA K+R  + E+G++K PG S +EV+G
Sbjct: 494 AEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDG 553

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +++EF+V D SHP  ++IY+ L  L +
Sbjct: 554 VVHEFLVGDTSHPLSQKIYEKLESLFK 580


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/585 (41%), Positives = 362/585 (61%), Gaps = 13/585 (2%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILF-NVQNPNSFSWNVAIRGFLET-GK 58
           + +TG  ++    + L  F A S S    + +  LF  + NP+ F WN  I+ + +    
Sbjct: 37  IIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQITNPDIFLWNAIIKAYSQIHSP 96

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF--LGYEIFGHVLKLGFDVDMYV 116
            +    L+K ML N    PD+FT+P L K CA++ +     G+++  HVL+ GF  D++V
Sbjct: 97  PQHPFSLFKTML-NSSVLPDSFTFPFLLKACANVLISAPQFGFQVHCHVLRNGFGSDVFV 155

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
           +NA+++ +   GD+  A  VFDES VR+ VS+N++INGF R G      R+F +M+   V
Sbjct: 156 NNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCV 215

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYI-SESG-LTLTVPLANALMDMYVKCGKLESA 234
            PDE T + ++S C+ LED  +GR++H  +  E G     V L N L+DMY KCG+L  A
Sbjct: 216 RPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMA 275

Query: 235 EEIFDSM-VNKTVVSC-TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           E +   +   K+VV+  T+++  YA  G + +AR++FD + E+ VV W A+I GY  A  
Sbjct: 276 ETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGC 335

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG-- 350
            +EAL LF +++  G+KPD V  V  LSAC++LGAL+ G  IHR    EN+  ++  G  
Sbjct: 336 FQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFT 395

Query: 351 TALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +A+VDMYAKCG+I  AL VF +  +  + +  Y +II GLA HG+   A + F EM  +G
Sbjct: 396 SAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLG 455

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           L PD ITF+ +LSAC H GLVD G+K F  M +++ +SP+++HY CMVDLLGR+G L+EA
Sbjct: 456 LKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEA 515

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528
            +LI  MP  A+ V+W AL  AC++HG+V++   A+ +L+EL       YV+L+NM  D+
Sbjct: 516 HRLILKMPFKANAVIWRALLSACKVHGDVALARVASYELVELQHDHGAGYVMLSNMLSDT 575

Query: 529 NMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           +  +EA  +RK ++  G++K PG S +E+N  L++F+  DKSHPE
Sbjct: 576 DQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHKFLAGDKSHPE 620


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/542 (42%), Positives = 340/542 (62%), Gaps = 8/542 (1%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           ++   E+    + + L+ + LR  G  PDNFT P++ K    L     G ++ G+ +K G
Sbjct: 2   LKSLAESKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
            + D YV N+++ ++ + G + +   VFDE   R++VSWN LI+ +V  G   +AI +F+
Sbjct: 61  LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120

Query: 170 DMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
            M  E  ++ DE T++  +SAC+ L++L +G  I+ Y+  +   ++V   NAL+DM+ KC
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVV-TEFEMSVRTGNALVDMFCKC 179

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G L+ A  IFDSM +K V   T+M+ GY   G  D AR++F+  P K VV W A++ GYV
Sbjct: 180 GCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYV 239

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           Q  R  EAL LF  MQ   I+PD    V  L+ C+Q GAL+ G WIH +I +    ++ V
Sbjct: 240 QFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKV 299

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +GTALVDMYAKCG I  AL VF+EM ER++ ++T++I GLA +G +  A+  + EM  VG
Sbjct: 300 VGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVG 359

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           +  D+ITF+ +L+AC HGG V EGR+ F  M+   ++ PK +HYSC++DLL R+GLL+EA
Sbjct: 360 VRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEA 419

Query: 469 EQLIRSMPMAAD---VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           E+LI  M    D   V V+ +L  A R +GNV I ER A KL +++  DS  + LLA++Y
Sbjct: 420 EELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVY 479

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD--KSHPELEQIYDCLVQ 583
             +N WE+   VR+ M++ G+ K PGCSSIEV+G+ +EFIV +   SHP++++I   L Q
Sbjct: 480 ASANRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFIVGNDPSSHPKMDEINSMLHQ 539

Query: 584 LT 585
            T
Sbjct: 540 TT 541


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/594 (39%), Positives = 356/594 (59%), Gaps = 15/594 (2%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILF--------NVQNPNSFSWNVAIRG 52
           +  TG I++    +R+I   + S  K L    + LF        + +  N F WN  I+ 
Sbjct: 37  LITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKS 96

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
           F      REA  ++  ML NG    D F++ L+ K C+ LGL   G +I G + ++    
Sbjct: 97  FSHGEDPREAFVIFNLMLENG-VCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGS 155

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+++ N ++ +++ CG LG+A  +FD    R+ VS+NS+I+G+V+ G  + A  LF  M 
Sbjct: 156 DVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMP 215

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E  + + ++   M+S  A+ E+   G  + W + E      +   N+++D  VKCGK+E
Sbjct: 216 ME--QKNLISWNSMISGYARSEE---GLRVAWELFEEMPKRDLISWNSMIDGCVKCGKME 270

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  + VVS   M+ GYAK G +DIAR +FD++PE+ V+  NA++ GYVQ   
Sbjct: 271 NAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGH 330

Query: 293 SKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             EAL  FH+M +   + PD  T +  LSA +QLG  D+G+ +H +IE   F+L+  LG 
Sbjct: 331 LMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGV 390

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DMYAKCG+I  AL VF ++ +++   + AIIGGLA+HG    A   F EM  + + P
Sbjct: 391 ALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKP 450

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D+ITF+G+L+AC H GLV EG   F  M  + ++ PKL+HY CMVD+LGR+G +EEA++ 
Sbjct: 451 DDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKF 510

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           +  MP+  + VVW  L  ACR H N +IGE  A  L+ +D  +   YVLL+N+Y    MW
Sbjct: 511 VEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFGMW 570

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            +  ++R MM++R ++K PGCS IE+ G ++EF VRDKSHP++ +IY  L  L+
Sbjct: 571 NDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVREIYSMLDSLS 624


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/561 (39%), Positives = 338/561 (60%), Gaps = 8/561 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD    +  ++   +  +WN  + GF +  +  EA+  Y  M+   G   + +++  +  
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL-CYFAMMHKEGFVLNEYSFASVLS 160

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ L     G ++   + K  F  D+Y+ +A++ ++  CG++  A  VFDE   RN+VS
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNSLI  F ++G   EA+ +F+ M   RVEPDEVT+  ++SACA L  + +G+E+H  + 
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV 280

Query: 208 ESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           ++  L   + L+NA +DMY KC +++ A  IFDSM  + V++ T+MI GYA       AR
Sbjct: 281 KNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAAR 340

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +F  + E+ VV WNA+I GY Q   ++EAL+LF  ++   + P   +  + L AC+ L 
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLA 400

Query: 327 ALDDGIWIHRFIEKENFNL------NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
            L  G+  H  + K  F        ++ +G +L+DMY KCG + +   VF +M ER+ ++
Sbjct: 401 ELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + A+I G A +G   +A+  F EM+  G  PD IT +G+LSAC H G V+EGR YF+ M+
Sbjct: 461 WNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMT 520

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
             F ++P   HY+CMVDLLGR+G LEEA+ +I  MPM  D V+WG+L  AC++H N+++G
Sbjct: 521 RDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLG 580

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           +  A KLLE++P +SG YVLL+NMY +   WE+   VRK M + GV K PGCS I++ G 
Sbjct: 581 KYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGH 640

Query: 561 LYEFIVRDKSHPELEQIYDCL 581
            + F+V+DKSHP  +QI+  L
Sbjct: 641 DHVFMVKDKSHPRKKQIHSLL 661



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 153/278 (55%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           R +H  + +SG +  + + N L+D Y KCG LE   ++FD M  + + +  +++ G  K 
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           GFLD A  +F  +PE+    WN+++ G+ Q  R +EAL  F  M   G   +  +    L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SACS L  ++ G+ +H  I K  F  +V +G+ALVDMY+KCGN+  A +VF EM +RN +
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           ++ ++I     +G A++A+  F  M+   + PDE+T   ++SAC     +  G++   ++
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
               +L   +   +  VD+  +   ++EA  +  SMP+
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 213/499 (42%), Gaps = 115/499 (23%)

Query: 78  DNFTYPLLFKVC--ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           D+  +  L   C  + L   ++ Y +   V+K GF  ++++ N +I  +  CG L     
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRY-VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM----------------QLERVEP- 178
           VFD+   RN+ +WNS++ G  + GF  EA  LFR M                Q +R E  
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 179 --------------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
                         +E +   ++SAC+ L D+N G ++H  I++S     V + +AL+DM
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG +  A+ +FD M ++ VVS                               WN++I
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVS-------------------------------WNSLI 225

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENF 343
             + Q   + EAL +F  M  + ++PD VT    +SAC+ L A+  G  +H R ++ +  
Sbjct: 226 TCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKL 285

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMP----------------------------- 374
             +++L  A VDMYAKC  I +A  +F  MP                             
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345

Query: 375 --ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
             ERN +++ A+I G   +G+  +A+S F  +    + P   +F  IL AC      D  
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKAC-----ADLA 400

Query: 433 RKYFAQMSSIFRLSPKLKHYS----------CMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
             +    + +  L    K  S           ++D+  + G +EE   + R M M  D V
Sbjct: 401 ELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCV 459

Query: 483 VWGALF--FACRLHGNVSI 499
            W A+   FA   +GN ++
Sbjct: 460 SWNAMIIGFAQNGYGNEAL 478



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 186/411 (45%), Gaps = 76/411 (18%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  N++   ++   + + N  SWN  I  F + G   EA+D+++ ML +    PD  T 
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLES-RVEPDEVTL 256

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
             +   CASL    +G E+ G V+K      D+ + NA + ++  C  +  A  +FD   
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 142 V-------------------------------RNLVSWNSLINGFVRSGFPREAIRLFRD 170
           +                               RN+VSWN+LI G+ ++G   EA+ LF  
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT------VPLANALMDM 224
           ++ E V P   +   ++ ACA L +L+LG + H ++ + G          + + N+L+DM
Sbjct: 377 LKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDM 436

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           YVKCG +E    +F  M+ +  VS   MI+G+A+ G+                       
Sbjct: 437 YVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGY----------------------- 473

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE-KENF 343
                     EAL LF EM  +G KPD +T +  LSAC   G +++G   H F     +F
Sbjct: 474 --------GNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEG--RHYFSSMTRDF 523

Query: 344 NLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            +  +    T +VD+  + G + +A  +  EMP + +S+ + +++    +H
Sbjct: 524 GVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 339/573 (59%), Gaps = 9/573 (1%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           +++S  LD   ++  ++  P+  SWN  + GF +  +  E+++ + +M R      + ++
Sbjct: 91  LTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLL-NEYS 149

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           +      CA L    +G ++   V K  +  D+Y+ +A+I ++  CG +  A  VF    
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            RNLV+WNSLI  + ++G   EA+ +F  M    +EPDEVT+  +VSACA L  L  G +
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 202 IHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           IH  + ++      + L NAL+DMY KC K+  A  +FD M  + VVS T+M+ GYA+  
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +  AR +F  + ++ VV WNA+I GY Q   ++EAL LF  ++   I P   T  + LS
Sbjct: 330 SVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLS 389

Query: 321 ACSQLGALDDGIWIHRFIEKENFNL------NVVLGTALVDMYAKCGNIAKALQVFHEMP 374
           AC+ L  L  G   H  + K+ F        ++ +G +L+DMY KCG+I    +VF +M 
Sbjct: 390 ACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK 449

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           ER+ +++ AII G A +G   +A+  F +M+  G  PD +T +G+L AC H GLV+EGR 
Sbjct: 450 ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRH 509

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M     L P   HY+CMVDLLGR+G L EA+ LI +MP+  D VVWG+L  AC++H
Sbjct: 510 YFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVH 568

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           GN+ +G+ AA KLLE+DP +SG YVLL+NMY +   W +  +VRK+M ++GV K PGCS 
Sbjct: 569 GNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSW 628

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           IEV   ++ F+V+DKSHP  +QIY  L  LT  
Sbjct: 629 IEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQ 661



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 213/493 (43%), Gaps = 128/493 (25%)

Query: 77  PDNFTYPLLFKVC----ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           P++  +  L   C    ++ G R     +   +L   F +++++ N +I V+  C  L  
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRL----VHARILMTQFSMEIFIQNRLIDVYGKCDCLDD 68

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV----- 187
           A  +FD    RN  +WNSLI+   +SGF  EA RLF  M     EPD+ +   MV     
Sbjct: 69  ARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP----EPDQCSWNSMVSGFAQ 124

Query: 188 ------------------------------SACAQLEDLNLGREIHWYISESGLTLTVPL 217
                                         SACA L DLN+G ++H  +S+S  +  V +
Sbjct: 125 HDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYM 184

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            +AL+DMY KCG +  AEE+F  M+ + +V+                             
Sbjct: 185 GSALIDMYSKCGSVACAEEVFSGMIERNLVT----------------------------- 215

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-R 336
             WN++I  Y Q   + EAL +F  M  +G++PD VT    +SAC+ L AL +G+ IH R
Sbjct: 216 --WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHAR 273

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQV--------------------------- 369
            ++   F  ++VLG ALVDMYAKC  + +A +V                           
Sbjct: 274 VVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKA 333

Query: 370 ----FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-- 423
               F +M +RN +++ A+I G   +G+  +A+  F  +    + P   TF  +LSAC  
Sbjct: 334 ARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393

Query: 424 ---------CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
                     H  ++ +G ++ +   S   +   L      +D+  + G +E+  ++   
Sbjct: 394 LADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSL------IDMYMKCGSIEDGSRVFEK 447

Query: 475 MPMAADVVVWGAL 487
           M    D V W A+
Sbjct: 448 MK-ERDCVSWNAI 459



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 162/311 (52%), Gaps = 4/311 (1%)

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L RD+ L    P+      ++ +C +       R +H  I  +  ++ + + N L+D+Y 
Sbjct: 6   LVRDLYL----PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KC  L+ A ++FD M  +   +  ++I    K GFLD A ++F  +PE     WN+++ G
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           + Q  R +E+L  F +M       +  +    LSAC+ L  L+ G  +H  + K  ++ +
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTD 181

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           V +G+AL+DMY+KCG++A A +VF  M ERN +T+ ++I     +G A +A+  F  M+ 
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            GL PDE+T   ++SAC     + EG +  A++    +    L   + +VD+  +   + 
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301

Query: 467 EAEQLIRSMPM 477
           EA ++   M +
Sbjct: 302 EARRVFDRMSI 312


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/649 (36%), Positives = 361/649 (55%), Gaps = 65/649 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M ++G     FA SRL+ F       N++   +I  +++NPN F  N  ++G+++     
Sbjct: 49  MILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPC 108

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPL------------------------------------ 84
           +A+ +YK ML +     DN+TYP+                                    
Sbjct: 109 KAIWVYKFMLESN-VAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTL 167

Query: 85  --LFKVCASL--------GLRFL----------GYEIFGHVLKLGFDV-------DMYVH 117
             ++ VC +L        G   L          GY + G+V +   DV       ++   
Sbjct: 168 INMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEE-AKDVYDRMPERNVIAS 226

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N++I +F   G++  AC +F+E   ++LVSW++LI+ + ++    EA+ LF++M    + 
Sbjct: 227 NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIM 286

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            DEV ++ ++SAC++L  +  G+ +H  + + G+   V L NAL+ MY  C ++ +A+++
Sbjct: 287 VDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKL 346

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F        +S  +MI GY K G ++ AR +FD +P+K  V W+A+I GY Q  R  E L
Sbjct: 347 FSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETL 406

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF EMQ  G KPD    V  +SAC+ L ALD G WIH +I K    +N++LGT L++MY
Sbjct: 407 VLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMY 466

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
            K G +  AL+VF  + E+   T+ A+I GLA++G    ++  FSEM   G+ P+EITF+
Sbjct: 467 MKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFV 526

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +L AC H GLVDEG ++F  M    ++ P +KHY CMVDLLGR+G+L+EAE+LI SMPM
Sbjct: 527 AVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPM 586

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
           A DV  WGAL  AC+ +G+   GER   KL+EL P   G  VLL+N+Y     W +  +V
Sbjct: 587 APDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEV 646

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           R MM + GV KTPGCS IE +G ++EF+  DK+HP+ E I   L ++ +
Sbjct: 647 RGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAK 695


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 325/538 (60%), Gaps = 1/538 (0%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P S  +N  +R    + + R  + L+ Q +R+ G R D F++  + K  + +   F G E
Sbjct: 74  PESIVFNPFLRDLSRSSEPRATI-LFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGME 132

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           + G   K+    D +V    + ++ SCG +  A NVFDE   R++V+WN++I  + R G 
Sbjct: 133 LHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGL 192

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             EA +LF +M+   V PDE+ +  +VSAC +  ++   R I+ ++ E+ + +   L  A
Sbjct: 193 VDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA 252

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ MY   G ++ A E F  M  + +   T M+ GY+K G LD A+ IFD   +K +V W
Sbjct: 253 LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCW 312

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
             +I  YV++   +EAL +F EM  +GIKPD V+    +SAC+ LG LD   W+H  I  
Sbjct: 313 TTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHV 372

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                 + +  AL++MYAKCG +     VF +MP RN ++++++I  L++HG+A DA+S 
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSL 432

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F+ M    + P+E+TF+G+L  C H GLV+EG+K FA M+  + ++PKL+HY CMVDL G
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFG 492

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+ LL EA ++I SMP+A++VV+WG+L  ACR+HG + +G+ AA ++LEL+P   G  VL
Sbjct: 493 RANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVL 552

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           ++N+Y     WE+   +R++MEE+ V K  G S I+ NG  +EF++ DK H +  +IY
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIY 610


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/524 (41%), Positives = 329/524 (62%), Gaps = 2/524 (0%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +FN +Q P    WN  I G  ++ +  +A+  Y  M   G  +  + T+  LFK CA + 
Sbjct: 69  VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKG-IQGSHLTFIFLFKSCARVS 127

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G  +  H +KLGF+  ++V NA+IH++V  G+L +A  VFD    R++VSWNS+I 
Sbjct: 128 DVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIIC 187

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G+ +    ++ + LFR+MQ   V  D VTM+  +SA   L +  +G  +  YI E G+ +
Sbjct: 188 GYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVV 247

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + L N L+DMY + G ++ A  +F  M  K +VS   MI+GYAK G L  A+K+F+++P
Sbjct: 248 DLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMP 307

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + V+ W ++I GY  AK+  EA+ LF EM  + +KPD +T    LSAC+ LG+LD G  
Sbjct: 308 SRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEA 367

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H +I K +   +V +G +L+DMY KCG + KALQVF++M  R+S+++T+II GLA++G 
Sbjct: 368 VHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGF 427

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           A  A++ F +M+  G+ P   TF+G+L AC H GLVD+G ++F  M + +RL+P++KHY 
Sbjct: 428 AESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYG 487

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           C+VDLL RSG L+ A   I+ MP+  DVV+W  L  AC+LHGN+ + E  + KLL LDP 
Sbjct: 488 CVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPS 547

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
           ++G YVL ++ Y  S+ W++  K+RK+ME   ++K    SSIEV
Sbjct: 548 NNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 195/413 (47%), Gaps = 68/413 (16%)

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           +   + H  +S   L  A  VF++     L+ WN +I+G  +S  P +AI  +  M  + 
Sbjct: 49  ISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKG 108

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           ++   +T I +  +CA++ D+  G+ +  +  + G    + ++NAL+ MYV  G+L  A+
Sbjct: 109 IQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQ 168

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++FD M+ + VVS  ++I GY +F                                R K+
Sbjct: 169 KVFDGMLERDVVSWNSIICGYYQFN-------------------------------RFKK 197

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
            L LF EMQA  ++ D+VT +  +SA   L   + G ++ ++I++    +++ LG  L+D
Sbjct: 198 VLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLID 257

Query: 356 M-------------------------------YAKCGNIAKALQVFHEMPERNSLTYTAI 384
           M                               YAK GN+  A ++F+EMP R+ +++T++
Sbjct: 258 MYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSM 317

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G +L  +  +A+  F EM+   + PDEIT    LSAC H G +D G    A    I +
Sbjct: 318 IIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGE---AVHDYIRK 374

Query: 445 LSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              K   +  + ++D+  + G++E+A Q+   M    D V W ++     ++G
Sbjct: 375 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMK-TRDSVSWTSIISGLAVNG 426



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    K+   + + +  SW   I G+    +  EAV L+++M+ +   +PD  T     
Sbjct: 295 NLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVS-MVKPDEITVATAL 353

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG    G  +  ++ K     D++V N++I ++  CG +  A  VF++   R+ V
Sbjct: 354 SACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSV 413

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW S+I+G   +GF   A+ +F  M  E + P   T +G++ ACA +  ++ G E H+  
Sbjct: 414 SWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVE-HFKS 472

Query: 207 SESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM 241
            E+   L   + +   ++D+  + G L+ A      M
Sbjct: 473 MENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKM 509


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 338/550 (61%), Gaps = 6/550 (1%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDL--YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           N F WN  IR  +E G +     L  Y Q LR  G RP+  T+  L K   S      G 
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLR-AGLRPNGHTFMYLLKALVSGQEVKEGE 111

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           E+   V++ GF    +V  A++  +V+CG +G    VFDE     LV W  +I  +V   
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVT 171

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           FP +A+ LFR M+   + PD V +  +VSAC  L DL + + +H +I +SG+ +   +++
Sbjct: 172 FPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSS 231

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+  Y +CG L+ A   F     K +V   TMI    +   L++ +++F  +P++ VV 
Sbjct: 232 TLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVS 291

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN++IGG+ +  + +EAL  FHEM+ +G+ P+A+T +  LSAC+  GALD G WIH +++
Sbjct: 292 WNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVD 351

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K + N +  L ++L+DMY+KCG+I KA+Q+F E   R+  T+T+I+ GLA+HG+   A+ 
Sbjct: 352 KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALH 411

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
           YFS+M    + PD++T +G+LSAC H GL+D+G  YF  M  +F L PK++HY  MVDLL
Sbjct: 412 YFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLL 471

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
           GR G L+EA  LI  MPM A+ ++WGA   ACR+H NV +GE AA +LL L P+D    V
Sbjct: 472 GRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARV 531

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP---ELEQ 576
           +L+NMY +   W+ +  +RK ++++G++K+PGCSSIEVNG ++ F+V D SHP   E+  
Sbjct: 532 MLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINS 591

Query: 577 IYDCLVQLTR 586
           + + + +L R
Sbjct: 592 MVEKIEKLMR 601



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           E  NL+   ++  ++ + +  SWN  I GF   G+ +EA+  + +M    G  P+  T  
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM-EFSGVSPNALTLL 328

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                CAS G    G  I  +V K   + D  + +++I ++  CGD+  A  +F+ES  R
Sbjct: 329 STLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRR 388

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +L +W S++ G    G   +A+  F  M+  +V+PD+VTM+G++SACA    L+ G    
Sbjct: 389 DLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG---- 444

Query: 204 WYISES-----GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           W+  +S     GL   V     ++D+  + G L+ A ++   M
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGM 487


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 326/559 (58%), Gaps = 6/559 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   N  SW   I+   +  K+ EA +LY+QML+  G  P+  T+  L   C + 
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ-AGISPNAVTFVSLLNSCNTP 271

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  I  H+ + G + DM V NA+I ++  C  +  A  +FD    R+++SW+++I
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 153 NGFVRSGFPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
            G+ +SG+       E  +L   M+ E V P++VT + ++ AC     L  GR+IH  +S
Sbjct: 332 AGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G  L   L  A+ +MY KCG +  AE++F  M NK VV+ T+ +  Y K G L  A K
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F ++P + VV WN +I GY Q     +   L   M+A G +PD VT +  L AC  L  
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  +H    K     + V+ T+L+ MY+KCG +A+A  VF +M  R+++ + A++ G
Sbjct: 512 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAG 571

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
              HG  L+A+  F  M+   + P+EIT   ++SAC   GLV EGR+ F  M   F+++P
Sbjct: 572 YGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           + +HY CMVDLLGR+G L+EAE+ I+SMP   D+ VW AL  AC+ H NV + ERAA  +
Sbjct: 632 RKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           LEL+P  + +Y+ L+N+Y  +  W+++ KVR++M++RG++K  G SSIE++G ++ F+  
Sbjct: 692 LELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAE 751

Query: 568 DKSHPELEQIYDCLVQLTR 586
           D +HPE++ I+  L  LT+
Sbjct: 752 DCAHPEIDAIHAELETLTK 770



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 236/471 (50%), Gaps = 48/471 (10%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P S S     R   + G++REA+ L   +++  G   ++ TY  + + CA       G  
Sbjct: 20  PTSVSGGEVWR-LCKAGRLREAIQLLG-IIKQRGLLVNSNTYGCVIEHCAKARRFEDGKM 77

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           +   + +LG ++D+Y+ N++I+ +    D+  A  VF    +R++V+W+S+I  +  +  
Sbjct: 78  VHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNH 137

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           P +A   F  M    +EP+ +T + ++ AC     L  GR+IH  +   G+   V +A A
Sbjct: 138 PAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATA 197

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ MY KCG++  A E+F  M  + VVS                               W
Sbjct: 198 LITMYSKCGEISVACEVFHKMTERNVVS-------------------------------W 226

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            AII    Q ++  EA  L+ +M   GI P+AVT V  L++C+   AL+ G  IH  I +
Sbjct: 227 TAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 286

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG----KALD 396
                ++++  AL+ MY KC ++ +A ++F  M +R+ ++++A+I G A  G    +++D
Sbjct: 287 RGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESID 346

Query: 397 AI-SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSC 454
            +      M   G+ P+++TF+ IL AC   G +++GR+  A++S + F L   L+  + 
Sbjct: 347 EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TA 404

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWG---ALFFACRLHGNVSIGER 502
           + ++  + G + EAEQ+   M    +VV W    +++  C   G++S  E+
Sbjct: 405 IFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKC---GDLSSAEK 451


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 341/571 (59%), Gaps = 38/571 (6%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET-GKMREAVDLYKQMLRNGGTRPDNF 80
           I++ K+  Y +    N+ +P  +S+NV IRG      K   A++ Y +M +  G +P+N 
Sbjct: 70  IADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRM-KFLGLKPNNL 128

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TYP LF  C++L     G      V++ G D D +V +++I ++  CG +G A  VFDE 
Sbjct: 129 TYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEI 188

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             ++LVSWNS+I+G+ +     EA+ LFR+M     +P+E++++ ++ AC +L DL LG 
Sbjct: 189 SQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGT 248

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            +  ++ E+ +TL   + +AL+ MY KCG L SA                          
Sbjct: 249 WVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSA-------------------------- 282

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                R+IFD + +K  V WNA+I GY Q   S+EA+ LF +M+ +   PD +T +  LS
Sbjct: 283 -----RRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILS 337

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ +GALD G  +  +  +  F  +V +GTALVDMYAKCG++  A +VF+ MP++N ++
Sbjct: 338 ACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVS 397

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVG--LMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + A+I  LA HG+A +A++ F  M+  G  + P++ITF+G+LSAC H GLVDEGR+ F  
Sbjct: 398 WNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHM 457

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           MSS F L PK++HYSCMVDL  R+G LEEA   + +MP   D V+ GAL  AC+   N+ 
Sbjct: 458 MSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNID 517

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           I ER    LLEL+P +SG YV+ + +Y +   W+++ ++R +M+++GV KTPGCS I++N
Sbjct: 518 ISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577

Query: 559 GLLYEFIVRDKSHP---ELEQIYDCLVQLTR 586
             L+EF   D  H    E+ QI D L+   R
Sbjct: 578 SQLHEFHAGDVLHQEWIEIHQILDLLIDDLR 608



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 130/272 (47%), Gaps = 3/272 (1%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L++    +  +C  ++  ++I   ++  ++    + +   A       A   F ++ +  
Sbjct: 31  LSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPT 90

Query: 277 VVPWNAIIGGYVQA-KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
              +N +I G   A  +S  AL  +  M+  G+KP+ +T      ACS L A+++G   H
Sbjct: 91  EYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGH 150

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
             + +   + +  +  +L+ MYA+CG +  A +VF E+ +++ +++ ++I G +    A 
Sbjct: 151 CSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAG 210

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           +A+  F EM+  G  P+E++ + +L AC   G +  G  +  +     +++      S +
Sbjct: 211 EAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLG-TWVEEFVVENKMTLNYFMGSAL 269

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + + G+ G L  A ++  SM    D V W A+
Sbjct: 270 IHMYGKCGDLVSARRIFDSMK-KKDKVTWNAM 300


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/524 (41%), Positives = 328/524 (62%), Gaps = 2/524 (0%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +FN +Q P    WN  I G  ++ +  +A+  Y  M   G  +  + T+  LFK CA + 
Sbjct: 28  VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKG-IQGSHLTFIFLFKSCARVS 86

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G  +  H +KLGF+   +V NA+IH++V  G+L +A  VFD    R++VSWNS+I 
Sbjct: 87  DVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIIC 146

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G+ +    ++ + LFR+MQ   V  D VTM+  +SA   L +  +G  +  YI E G+ +
Sbjct: 147 GYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVV 206

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + L N L+DMY + G ++ A  +F  M  K +VS   MI+GYAK G L  A+K+F+++P
Sbjct: 207 DLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMP 266

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + V+ W ++I GY  AK+  EA+ LF EM  + +KPD +T    LSAC+ LG+LD G  
Sbjct: 267 SRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEA 326

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H +I K +   +V +G +L+DMY KCG + KALQVF++M  R+S+++T+II GLA++G 
Sbjct: 327 VHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGF 386

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           A  A++ F +M+  G+ P   TF+G+L AC H GLVD+G ++F  M + +RL+P++KHY 
Sbjct: 387 AESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYG 446

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           C+VDLL RSG L+ A   I+ MP+  DVV+W  L  AC+LHGN+ + E  + KLL LDP 
Sbjct: 447 CVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPS 506

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
           ++G YVL ++ Y  S+ W++  K+RK+ME   ++K    SSIEV
Sbjct: 507 NNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 550



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 194/413 (46%), Gaps = 68/413 (16%)

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           +   + H  +S   L  A  VF++     L+ WN +I+G  +S  P +AI  +  M  + 
Sbjct: 8   ISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKG 67

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           ++   +T I +  +CA++ D+  G+ +  +  + G      ++NAL+ MYV  G+L  A+
Sbjct: 68  IQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQ 127

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++FD M+ + VVS  ++I GY +F                                R K+
Sbjct: 128 KVFDGMLERDVVSWNSIICGYYQFN-------------------------------RFKK 156

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
            L LF EMQA  ++ D+VT +  +SA   L   + G ++ ++I++    +++ LG  L+D
Sbjct: 157 VLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLID 216

Query: 356 M-------------------------------YAKCGNIAKALQVFHEMPERNSLTYTAI 384
           M                               YAK GN+  A ++F+EMP R+ +++T++
Sbjct: 217 MYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSM 276

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G +L  +  +A+  F EM+   + PDEIT    LSAC H G +D G    A    I +
Sbjct: 277 IIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGE---AVHDYIRK 333

Query: 445 LSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              K   +  + ++D+  + G++E+A Q+   M    D V W ++     ++G
Sbjct: 334 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMK-TRDSVSWTSIISGLAVNG 385



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    K+   + + +  SW   I G+    +  EAV L+++M+ +   +PD  T     
Sbjct: 254 NLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVS-MVKPDEITVATAL 312

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG    G  +  ++ K     D++V N++I ++  CG +  A  VF++   R+ V
Sbjct: 313 SACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSV 372

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW S+I+G   +GF   A+ +F  M  E + P   T +G++ ACA +  ++ G E H+  
Sbjct: 373 SWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVE-HFKS 431

Query: 207 SESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM 241
            E+   L   + +   ++D+  + G L+ A      M
Sbjct: 432 MENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKM 468


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 341/578 (58%), Gaps = 42/578 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +  T LIS  FA SRL+    +S++ N++Y   +   +  PNSF  N  ++ + E+    
Sbjct: 34  LITTNLISDTFAASRLLD-SVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPE 92

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+  Y +M R  G   DN+TYP + K C ++     G  + G  +K GF  D++V N +
Sbjct: 93  RALRFYAEM-RRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGL 151

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  CG+ G A  VFD    ++LVSWNS++ G+V  G    A  +F +M     E D 
Sbjct: 152 ISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP----ERDV 207

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY-VKCGKLESAEEIFD 239
           V+                     W I              ++D Y  K G++  A   FD
Sbjct: 208 VS---------------------WSI--------------MIDGYGKKMGEVNRARVFFD 232

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           SM  + +VS  +MI GYAK G +++AR+IFD + +K V+ W+ +I GY Q + SKEAL L
Sbjct: 233 SMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNL 292

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M   GIKPD V+ V  +SACSQLGALD G WIH ++++    L++V+ TALVDMY K
Sbjct: 293 FRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLK 352

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+  +A ++F+ MPERN +++  +I GL ++G   +A+  F++M    +  D++ FLG+
Sbjct: 353 CGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGV 412

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H  LV EG   F QM  ++RL PKL+HY C+VDLLGR+G L++ + +I+SMPM  
Sbjct: 413 LMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKP 472

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           +  +WG+L  ACR+H NV++ E    +L EL   DSG+YVL++N+Y D  MWE   ++RK
Sbjct: 473 NAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRK 532

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +M+ER ++K  G S IEV+G + EF+  +KSH   E+I
Sbjct: 533 LMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEI 570


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/544 (37%), Positives = 328/544 (60%), Gaps = 1/544 (0%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P S  +N  +R    +G+ R  + L+ Q +R+ G R D  ++P + K  + +   F G E
Sbjct: 77  PESIVFNSLLRDLSRSGEPRATI-LFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGME 135

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           + G   K+    D +V   ++ ++ +CG +  A NVFDE   R++V+WN++I  + R G 
Sbjct: 136 LHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGL 195

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             EA +LF +M+   V PDE+ +  +VSAC +  ++   R I+ ++ E+ + +   L  A
Sbjct: 196 LDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTA 255

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ MY   G ++ A E F  M  + +   T M+ GY+K G LD AR IFD    K +V W
Sbjct: 256 LVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCW 315

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
             +I  Y ++   +EAL +F EM  +GIKPD VT +  +SAC  LG LD   W+HR+   
Sbjct: 316 TTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHL 375

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                 + +  AL++MYAKCG +  A  VF +MP RN ++++++I   A+HG+A D++S 
Sbjct: 376 NGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSL 435

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F++M    + P+E+TF+G+L  C H GLV+EG+K FA M+  + ++PK++HY CMVDL G
Sbjct: 436 FAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFG 495

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+ LL EA ++I SMPMA +VV+WG+L  ACR+HG + +GE AA ++L+L+P   G  VL
Sbjct: 496 RANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVL 555

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           ++N+Y     W+    +R +ME++ V K  G S I++NG  +EF++ DK H +  +IY  
Sbjct: 556 MSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTK 615

Query: 581 LVQL 584
           L ++
Sbjct: 616 LYEV 619


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 329/526 (62%), Gaps = 8/526 (1%)

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL----GLRFLGYEIFGHVLKLGFDVDMYV 116
           +AV  Y +ML  GG RPD +T+P L K  A      G       +  HV++LG   + +V
Sbjct: 2   DAVAGYARMLARGG-RPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            ++++  + + GD   A  +  E      V+WN+LI+G  R G   E+   F DM     
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGE--CDTPVAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 177 EPDEVTMIGMVSACAQ-LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
            P  VT + ++SAC +   D+ LG ++H  +  SG+   + + NAL+DMY +C  + SA 
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++FD M  ++VVS T+++ G A+ G +D AR +FD +PE+  V W A+I GYV A R +E
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL +F EMQ + +  D  T V  ++AC+QLGAL+ G W+  ++ ++   ++  +G AL+D
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALID 298

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY+KCG+I +AL VF  M  R+  T+TAII GLA++G   +AI  F  MI V   PDE+T
Sbjct: 299 MYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVT 358

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+L+AC H GLVD+GR++F  M   + ++P + HY C++DLLGR+G + EA   I  M
Sbjct: 359 FIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQM 418

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM  +  +WG L  ACR+HGN  IGE  A +LLELDP++S +Y+LL+N+Y   N WE+  
Sbjct: 419 PMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVR 478

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           ++R  + E+G++K PGCS IE++G+++EF+  D+SHP  ++IY  L
Sbjct: 479 RLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKL 524



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 150/319 (47%), Gaps = 21/319 (6%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D    +   +   ++ SW   I G++   + REA++++++M +      D FT   + 
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREM-QYSNVSADEFTMVSVI 262

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   +G  +  ++ + G  +D +V NA+I ++  CG +  A +VF     R+  
Sbjct: 263 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKF 322

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +W ++I G   +G+  EAI +F  M      PDEVT IG+++AC     ++ GRE    +
Sbjct: 323 TWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM 382

Query: 207 SES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM---VNKTV---VSCTTMIVGYAKF 259
            E+  +   V     ++D+  + GK+  A +  D M    N T+   +     + G ++ 
Sbjct: 383 IEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEI 442

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G L +A ++ +  PE  +V +  +   Y +  R ++   L H +   GIK +        
Sbjct: 443 GEL-VAERLLELDPENSMV-YILLSNIYAKCNRWEDVRRLRHAIMEKGIKKE-------- 492

Query: 320 SACSQLGALDDGIWIHRFI 338
             CS +    DGI IH F+
Sbjct: 493 PGCSLIEM--DGI-IHEFV 508



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M+  G+    F  + LI     S+  +++    +   + + + F+W   I G    G   
Sbjct: 281 MSRQGIKMDAFVGNALIDM--YSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEE 338

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH-NA 119
           EA++++ +M+R   T PD  T+  +   C   GL   G E F  +++        VH   
Sbjct: 339 EAIEMFHRMIRVSET-PDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGC 397

Query: 120 VIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLI 152
           +I +    G +  A +  D+     N   W +L+
Sbjct: 398 IIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLL 431


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/556 (41%), Positives = 338/556 (60%), Gaps = 11/556 (1%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKM 59
           +T+TGL  +GF     +AFCA+S    L +   IL      PN++     +RGFL     
Sbjct: 58  LTVTGLAGNGFPAFGFLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLP 117

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL------GLRFLGYEIFGHVLKLGF-DV 112
             A+ L+++++R+     D  T+    K  A+       G    G  I    LK GF   
Sbjct: 118 ARALGLFRRVVRDR-LPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGE 176

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDM 171
            + V NA++H + +   L  A  VFDE   R++VSW +L++G+ R+G   EA RLF R +
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
            +  + P+ VT++  VSA  Q+  L  G  +H Y++E G+  +V L NAL+DM+ KCG +
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
             A E+FD M  K V S T+M+  YAK G L+ A ++F D+P + VV W+ +I  Y Q  
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR-FIEKENFNLNVVLG 350
           + +EA+ LF EM A G+ P   T V  LSAC+QLG LD G WI+  +I      L V LG
Sbjct: 357 QPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLG 416

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            AL+DM+AKCG++ +A ++F EM ERN +++  +I   A+HG++ +AI  F ++ G  ++
Sbjct: 417 NALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV 476

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           PD+ITFLG+L++C H GLV EGR+YF +M   +R+ P+++HY+CM+DLLG+ GLLEEA +
Sbjct: 477 PDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFE 536

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           + R MPM AD   WGAL  ACR+HGNV IG   A KL+ELDP DSGIYVL++ +Y   N 
Sbjct: 537 VARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNK 596

Query: 531 WEEAGKVRKMMEERGV 546
           W++   +R  M +RG 
Sbjct: 597 WDQVKMLRMTMRDRGT 612


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 340/571 (59%), Gaps = 38/571 (6%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET-GKMREAVDLYKQMLRNGGTRPDNF 80
           I++ K+  Y +    N+ +P  +S+NV IRG      K   A++ Y +M +  G +P+N 
Sbjct: 70  IADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRM-KFLGLKPNNL 128

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TYP LF  C++L     G      V++ G D D +V +++I ++  CG +G A  VFDE 
Sbjct: 129 TYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEI 188

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             ++LVSWNS+I+G+ +     EA+ LFR+M     +P+E++++ ++ AC +L DL LG 
Sbjct: 189 SQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGT 248

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            +  ++ E+ +TL   + +AL+ MY KCG L SA                          
Sbjct: 249 WVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSA-------------------------- 282

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                R+IFD + +K  V WNA+I GY Q   S+EA+ LF +M+ +   PD +T +  LS
Sbjct: 283 -----RRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILS 337

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ +GALD G  +  +  +  F  +V +GTALVDMYAKCG++  A +VF+ MP +N ++
Sbjct: 338 ACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVS 397

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVG--LMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + A+I  LA HG+A +A++ F  M+  G  + P++ITF+G+LSAC H GLVDEGR+ F  
Sbjct: 398 WNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHM 457

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           MSS F L PK++HYSCMVDL  R+G LEEA   + +MP   D V+ GAL  AC+   N+ 
Sbjct: 458 MSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNID 517

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           I ER    LLEL+P +SG YV+ + +Y +   W+++ ++R +M+++GV KTPGCS I++N
Sbjct: 518 ISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577

Query: 559 GLLYEFIVRDKSHP---ELEQIYDCLVQLTR 586
             L+EF   D  H    E+ QI D L+   R
Sbjct: 578 SQLHEFHAGDVLHQEWIEIHQILDLLIDDLR 608



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 130/272 (47%), Gaps = 3/272 (1%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L++    +  +C  ++  ++I   ++  ++    + +   A       A   F ++ +  
Sbjct: 31  LSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPT 90

Query: 277 VVPWNAIIGGYVQA-KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
              +N +I G   A  +S  AL  +  M+  G+KP+ +T      ACS L A+++G   H
Sbjct: 91  EYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGH 150

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
             + +   + +  +  +L+ MYA+CG +  A +VF E+ +++ +++ ++I G +    A 
Sbjct: 151 CSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAG 210

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           +A+  F EM+  G  P+E++ + +L AC   G +  G  +  +     +++      S +
Sbjct: 211 EAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLG-TWVEEFVVENKMTLNYFMGSAL 269

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + + G+ G L  A ++  SM    D V W A+
Sbjct: 270 IHMYGKCGDLVSARRIFDSMK-KKDKVTWNAM 300


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/507 (43%), Positives = 310/507 (61%), Gaps = 35/507 (6%)

Query: 74  GTRPDNFTYPLLFKVCASL-GLRFLGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLG 131
           G  PD FT PL+ K  A + G+R  G +I    +K G    ++YV N ++ ++  CG + 
Sbjct: 105 GLEPDGFTIPLVLKALALIQGIR-EGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIH 163

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
               VFDE   R+LVSW +LI  F ++G    A+  F +M   R+  D  T++ ++SAC+
Sbjct: 164 DVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACS 223

Query: 192 QLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            L DLNLG+++H YI     +   V + NAL+DMY+KC  L SA                
Sbjct: 224 NLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSA---------------- 267

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                           K+FD++P K VV WNA+I G     R +EAL  F  MQ  G+KP
Sbjct: 268 ---------------YKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKP 312

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D VT V  L++C+ LG L+ G W+H ++ + +   +  +G AL+DMYAKCG+I +A +VF
Sbjct: 313 DEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVF 372

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             M  R+  +YTA+I GLALHG+A  A   FSEM  VG+ P+E+TFLG+L AC HGGLV 
Sbjct: 373 ESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVA 432

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           EG+KYF QMS  ++L P+ +HY CM+DLLGR+GL++EAE++I  M +  DV   GAL  A
Sbjct: 433 EGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGA 492

Query: 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
           CR+HGNV IGE    KL ELDP + G Y+L+ N+Y   + W++A K+RK M+ + + KTP
Sbjct: 493 CRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTP 552

Query: 551 GCSSIEVNGLLYEFIVRDKSHPELEQI 577
           GCS IEV+G+++EF   DKSHP  + I
Sbjct: 553 GCSLIEVDGVVHEFRKGDKSHPRSKVI 579



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 185/374 (49%), Gaps = 41/374 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQM--LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           SW   I+ F + G    AV+ + +M  LR    R D  T  ++   C++LG   LG ++ 
Sbjct: 179 SWTTLIQAFTKAGLYSRAVEAFMEMCDLR---LRADGRTLVVVLSACSNLGDLNLGQKVH 235

Query: 103 GHVLK-LGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            ++   +    D++V NA++ +++ C DL  A  VFDE  V+N+V+WN++I+G    G  
Sbjct: 236 SYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRY 295

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           REA+  FR MQ + V+PDEVT++G++++CA L  L +G+ +H Y+  + +     + NAL
Sbjct: 296 REALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNAL 355

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG ++ A  +F+SM  + V S T MI G A  G                     
Sbjct: 356 LDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHG--------------------- 394

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEK 340
                      +  A  +F EM   GI+P+ VT +  L ACS  G + +G  +  +  +K
Sbjct: 395 ----------EANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDK 444

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAIS 399
                       ++D+  + G + +A ++ H+M  R +     A++G   +HG      S
Sbjct: 445 YKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGES 504

Query: 400 YFSEMIGVGLMPDE 413
              ++    L PDE
Sbjct: 505 VMQKL--TELDPDE 516


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 343/578 (59%), Gaps = 3/578 (0%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  + L+ F A  E   LD   K+   +   N  SW   I G+      ++AVDL+ +M+
Sbjct: 170 FVQNSLVHFYA--ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           R+    P++ T   +   CA L     G +++  +   G +V+  + +A++ +++ C  +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            +A  +FDE    NL   N++ + +VR G  REA+ +F  M    V PD ++M+  +S+C
Sbjct: 288 DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           +QL ++  G+  H Y+  +G      + NAL+DMY+KC + ++A  IFD M NKTVV+  
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIK 309
           +++ GY + G +D A + F+ +PEK +V WN II G VQ    +EA+ +F  MQ+  G+ 
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN 467

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D VT +   SAC  LGALD   WI+ +IEK    L+V LGT LVDM+++CG+   A+ +
Sbjct: 468 ADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F+ +  R+   +TA IG +A+ G A  AI  F +MI  GL PD + F+G L+AC HGGLV
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            +G++ F  M  +  +SP+  HY CMVDLLGR+GLLEEA QLI  MPM  + V+W +L  
Sbjct: 588 QQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLA 647

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+ GNV +   AA K+  L P+ +G YVLL+N+Y  +  W +  KVR  M+E+G+ K 
Sbjct: 648 ACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP 707

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           PG SSI++ G  +EF   D+SHPE+  I   L ++++ 
Sbjct: 708 PGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQR 745



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 256/521 (49%), Gaps = 73/521 (14%)

Query: 1   MTITGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNS-FSWNVAIRGFLETGK 58
           +T  GL +     ++L+A  C +   ++L +  ++  N ++  + F +N  IRG+  +G 
Sbjct: 55  LTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGL 114

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             EA+ L+ +M+ N G  PD +T+P     CA    +  G +I G ++K+G+  D++V N
Sbjct: 115 CNEAILLFLRMM-NSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN 173

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL-FRDMQLERVE 177
           +++H +  CG+L  A  VFDE   RN+VSW S+I G+ R  F ++A+ L FR ++ E V 
Sbjct: 174 SLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVT 233

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+ VTM+ ++SACA+LEDL  G +++ +I  SG+ +   + +AL+DMY+KC  ++ A+ +
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD      +  C  M   Y + G                                ++EAL
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGL-------------------------------TREAL 322

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F+ M  +G++PD ++ +  +S+CSQL  +  G   H ++ +  F     +  AL+DMY
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMY 382

Query: 358 AKC-------------------------------GNIAKALQVFHEMPERNSLTYTAIIG 386
            KC                               G +  A + F  MPE+N +++  II 
Sbjct: 383 MKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIIS 442

Query: 387 GLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIF 443
           GL       +AI  F  M    G+  D +T + I SAC H G +D  +   Y+ + + I 
Sbjct: 443 GLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGI- 501

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           +L  +L   + +VD+  R G  E A  +  S+    DV  W
Sbjct: 502 QLDVRLG--TTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 539


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 346/592 (58%), Gaps = 42/592 (7%)

Query: 35  LFNVQNPNSFSWNVAIRG-FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-- 91
           LF+    ++F ++ A+R  F  +      + LY++M R  G   D FT+  LFK CA   
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRM-RRTGVCTDAFTFHFLFKCCARGR 117

Query: 92  ---LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE--------- 139
              L  + L    F  +L     +   V N +IH++V  G  G A   FD+         
Sbjct: 118 AHVLLCQMLHAACFRTMLPSAVPL---VSNPIIHMYVELGLAGDARRAFDDIPVKDAVAW 174

Query: 140 ----------------------SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
                                 S  RN++SW  LI+G+ R+G   EA+  F  M  + +E
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PDEVT+IG++SACAQL+DL  GR +H  + E G+ ++  L  AL+DMY KCG +  A E+
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294

Query: 238 FDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           FD++   +   S   MI GY K G +D+AR +FD + ++ +V +N++I GY+   R +EA
Sbjct: 295 FDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREA 354

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L LF +M+   ++ D  T V  L+AC+ LGAL  G  +H  IE+    +++ LGTAL+DM
Sbjct: 355 LLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDM 414

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCG + +A  VF  M  R+  T++A+I GLA +G    A+ YF  M   G  P+ +T+
Sbjct: 415 YLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTY 474

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + IL+AC H  L+DEGR YF +M  +  + P ++HY CM+DLLGRSGLL+EA  L+R+MP
Sbjct: 475 IAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMP 534

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           M  + V+W ++  ACR+H + ++   AA  LL+L+P +  +YV L N+Y DS  WE+A +
Sbjct: 535 MQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQ 594

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +R++MEERGV+K  G SSI V G +++FIV D++HP++ +I   + ++TR  
Sbjct: 595 IRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRL 646



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 193/414 (46%), Gaps = 38/414 (9%)

Query: 118 NAVIHVFVSCGDLGL--ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           N++++ F     L L  A  +FD       +   +L   F  S  P   + L+R M+   
Sbjct: 39  NSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTG 98

Query: 176 VEPDEVTMIGMVSACAQ-LEDLNLGREIHWYISESGLTLTVPL-ANALMDMYVKCGKLES 233
           V  D  T   +   CA+    + L + +H     + L   VPL +N ++ MYV+ G    
Sbjct: 99  VCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGD 158

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A   FD +  K  V+ TT+I G AK G LD A  +    P + V+ W  +I GY +A R+
Sbjct: 159 ARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRA 218

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            EA+  F+ M + GI+PD VT +  LSAC+QL  L  G  +H+ + ++   ++  L  AL
Sbjct: 219 AEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVAL 278

Query: 354 VDMYAKCGNIAKALQV--------------------------------FHEMPERNSLTY 381
           +DMYAKCG+I +A +V                                F +M +R+ +T+
Sbjct: 279 IDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTF 338

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            ++I G    G+  +A+  F +M    L  D  T + +L+AC   G + +GR   A +  
Sbjct: 339 NSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQ 398

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              +   +   + ++D+  + G +EEA  + ++M +  DV  W A+      +G
Sbjct: 399 RL-VEVDIYLGTALLDMYLKCGRVEEASLVFQAMSV-RDVHTWSAMIAGLAFNG 450



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 149/295 (50%), Gaps = 14/295 (4%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    +   +++ +  ++N  I G++  G++REA+ L+ QM R+   R DNFT   L 
Sbjct: 319 HVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD-LRADNFTMVSLL 377

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASLG    G  +   + +   +VD+Y+  A++ +++ CG +  A  VF    VR++ 
Sbjct: 378 TACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVH 437

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +W+++I G   +G  + A+  F  M+++  +P+ VT I +++AC+    L+ GR    Y 
Sbjct: 438 TWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGR---LYF 494

Query: 207 SESGLTLTV-PLAN---ALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGF 261
            E  L   + PL      ++D+  + G L+ A ++  +M +    V   +++        
Sbjct: 495 EEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKD 554

Query: 262 LDIARKIFDDL----PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
            ++AR   + L    P++  V +  +   Y+ +++ ++A  +   M+  G+K  A
Sbjct: 555 ANLARNAAEHLLKLEPDEDAV-YVQLYNIYIDSRQWEDASQIRRLMEERGVKKAA 608


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 335/561 (59%), Gaps = 26/561 (4%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T +I      SRL+ FCA S+S NL+Y   +   +  P+ + WN  I+G+  +    
Sbjct: 28  MITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPD 87

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ +Y++M R  G  PD+FT+P + K C+ +    LG  +   ++K GF+VD+Y   A+
Sbjct: 88  EALTMYREM-RQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATAL 146

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++ +CGD+  A  VFD+    N+V+W SLI G + +  P EA+R+++DM+L  V P+E
Sbjct: 147 LQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNE 206

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +TM+ ++ ACA+  DLN GR +H    + GL                        + F S
Sbjct: 207 ITMVNVLVACARSRDLNAGRWVHDRTGQMGL------------------------DPFQS 242

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
             N  V+  T ++  YAK G L  AR +F+ +P + +V WN++IG Y Q  ++ EAL LF
Sbjct: 243 NSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLF 302

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            +M+  G  PD  T +  + AC+ LGAL  G  +H ++ K N   +  +GTALVDMYAK 
Sbjct: 303 SDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKS 362

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGI 419
           G+  +A QVF E+ +++   +T++I GLA+HG   +A+++F +M     L+PDEIT++G+
Sbjct: 363 GDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGV 422

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSAC H G V++G+ +F  M ++  + P  +HY CMVDLL R+G L EAE+L+  MP+  
Sbjct: 423 LSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEP 482

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           +  +W AL   C+++ N+ + +R   ++ EL+   SG+YVLL+N+Y  +  WEE    R+
Sbjct: 483 NTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARE 542

Query: 540 MMEERGVEKTPGCSSIEVNGL 560
           +M+ER ++K+ G SS+E+  L
Sbjct: 543 LMKERKIQKSLGHSSVEMKML 563


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 343/578 (59%), Gaps = 3/578 (0%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  + L+ F A  E   LD   K+   +   N  SW   I G+      ++AVDL+ +M+
Sbjct: 170 FVQNSLVHFYA--ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           R+    P++ T   +   CA L     G +++  +   G +V+  + +A++ +++ C  +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            +A  +FDE    NL   N++ + +VR G  REA+ +F  M    V PD ++M+  +S+C
Sbjct: 288 DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           +QL ++  G+  H Y+  +G      + NAL+DMY+KC + ++A  IFD M NKTVV+  
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIK 309
           +++ GY + G +D A + F+ +PEK +V WN II G VQ    +EA+ +F  MQ+  G+ 
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN 467

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D VT +   SAC  LGALD   WI+ +IEK    L+V LGT LVDM+++CG+   A+ +
Sbjct: 468 ADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F+ +  R+   +TA IG +A+ G A  AI  F +MI  GL PD + F+G L+AC HGGLV
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            +G++ F  M  +  +SP+  HY CMVDLLGR+GLLEEA QLI  MPM  + V+W +L  
Sbjct: 588 QQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLA 647

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+ GNV +   AA K+  L P+ +G YVLL+N+Y  +  W +  KVR  M+E+G+ K 
Sbjct: 648 ACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP 707

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           PG SSI++ G  +EF   D+SHPE+  I   L ++++ 
Sbjct: 708 PGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQR 745



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 256/521 (49%), Gaps = 73/521 (14%)

Query: 1   MTITGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNS-FSWNVAIRGFLETGK 58
           +T  GL +     ++L+A  C +   ++L +  ++  N ++  + F +N  IRG+  +G 
Sbjct: 55  LTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGL 114

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             EA+ L+ +M+ N G  PD +T+P     CA    +  G +I G ++K+G+  D++V N
Sbjct: 115 CNEAILLFLRMM-NSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN 173

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL-FRDMQLERVE 177
           +++H +  CG+L  A  VFDE   RN+VSW S+I G+ R  F ++A+ L FR ++ E V 
Sbjct: 174 SLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVT 233

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+ VTM+ ++SACA+LEDL  G +++ +I  SG+ +   + +AL+DMY+KC  ++ A+ +
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD      +  C  M   Y + G                                ++EAL
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGL-------------------------------TREAL 322

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F+ M  +G++PD ++ +  +S+CSQL  +  G   H ++ +  F     +  AL+DMY
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMY 382

Query: 358 AKC-------------------------------GNIAKALQVFHEMPERNSLTYTAIIG 386
            KC                               G +  A + F  MPE+N +++  II 
Sbjct: 383 MKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIIS 442

Query: 387 GLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIF 443
           GL       +AI  F  M    G+  D +T + I SAC H G +D  +   Y+ + + I 
Sbjct: 443 GLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGI- 501

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           +L  +L   + +VD+  R G  E A  +  S+    DV  W
Sbjct: 502 QLDVRLG--TTLVDMFSRCGDPESAMSIFNSL-TNRDVSAW 539


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/519 (40%), Positives = 320/519 (61%), Gaps = 2/519 (0%)

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +AV  Y +ML  G   PD +T+P L K  A          +  HV+K G   + +V  ++
Sbjct: 26  DAVAGYARMLARGAM-PDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           +  + + GD   A  +  E      V WN+LI+G  R     EA   F DM      P  
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 181 VTMIGMVSACAQ-LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           VT + ++SAC +   D+ LG ++H  +  SG+   + + NAL+DMY +C  +ESA ++FD
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M  ++VVS T+++ G  + G +D AR +F  +PE+  V W A+I GYVQA R +EAL +
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F EMQ + +  D  T V  ++AC+QLGAL+ G W+  ++ ++   ++  +G AL+DMY+K
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSK 324

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I +AL VF +M  R+  T+TAII GLA++G   +AI  F  MIGV   PDE+TF+G+
Sbjct: 325 CGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGV 384

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GLVD+GR++F  M   + ++P + HY C++DL GR+G + EA   I  MPM  
Sbjct: 385 LTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTP 444

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           +  +WG L  ACR+HGN  IGE    +LL++DP++S +Y LL+N+Y   N WE+  ++R 
Sbjct: 445 NSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRH 504

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            + E+G++K PGCS IE+NG+++EF+  D+SHP  ++IY
Sbjct: 505 TIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIY 543



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D    +   +   ++ SW   I G+++  + REA++++++M +      D FT   + 
Sbjct: 226 RVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREM-QCSNVSADEFTMVSVI 284

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   +G  +  ++ + G  +D +V NA+I ++  CG +  A +VF +   R+  
Sbjct: 285 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKF 344

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +W ++I G   +G+  EAI +F  M      PDEVT IG+++AC     ++ GRE    +
Sbjct: 345 TWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM 404

Query: 207 SES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM---VNKTV---VSCTTMIVGYAKF 259
            E+  +   V     ++D++ + GK+  A +  D M    N T+   +     + G ++ 
Sbjct: 405 RETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEI 464

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           G L +  ++    PE   V +  +   Y +  R ++   L H +   GIK +
Sbjct: 465 GEL-VTERLLQMDPENSTV-YTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKE 514



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M+  G+    F  + LI     S+  +++    +  ++ + + F+W   I G    G   
Sbjct: 303 MSRQGIKMDAFVGNALIDM--YSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGE 360

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH-NA 119
           EA++++ +M+    T PD  T+  +   C   GL   G E F  + +        VH   
Sbjct: 361 EAIEMFHRMIGVSET-PDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGC 419

Query: 120 VIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           +I +F   G +  A +  D+     N   W +L+      G     I      +L +++P
Sbjct: 420 IIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHG--NSEIGELVTERLLQMDP 477

Query: 179 DEVTMIGMVS----ACAQLEDLNLGREIHWYISESGL 211
           +  T+  ++S     C + ED+   R +   I E G+
Sbjct: 478 ENSTVYTLLSNIYAKCNRWEDV---RRLRHTIMEKGI 511


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/538 (41%), Positives = 326/538 (60%), Gaps = 36/538 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +SF  N+ I G+        A+ +Y+  +RNG   PD +T+P + K CA         + 
Sbjct: 73  SSFPCNLLISGYASGQLPWLAILIYRWTVRNGFV-PDVYTFPAVLKSCAKFSGIGEVRQF 131

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               +K G   D+YV N ++HV+  CGD   A  VF++  VR++VSW  LI+G+V++G  
Sbjct: 132 HSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLF 191

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EAI LF  M    VEP+  T + ++ AC +L  LNLG+ IH  + +      + + NA+
Sbjct: 192 NEAISLFLRMN---VEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAV 248

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY+KC          DS+ +                     ARK+FD++PEK ++ W 
Sbjct: 249 LDMYMKC----------DSVTD---------------------ARKMFDEMPEKDIISWT 277

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           ++IGG VQ +  +E+L LF +MQA+G +PD V     LSAC+ LG LD G W+H +I+  
Sbjct: 278 SMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCH 337

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               +V +GT LVDMYAKCG I  A ++F+ MP +N  T+ A IGGLA++G   +A+  F
Sbjct: 338 RIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQF 397

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS-IFRLSPKLKHYSCMVDLLG 460
            +++  G  P+E+TFL + +ACCH GLVDEGRKYF +M+S ++ LSP L+HY CMVDLL 
Sbjct: 398 EDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLC 457

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+GL+ EA +LI++MPM  DV + GAL  +   +GNV   +     L  ++ QDSGIYVL
Sbjct: 458 RAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVL 517

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           L+N+Y  +  W E   VR++M+++G+ K PG S I V+G+ +EF+V D SHP+ E+IY
Sbjct: 518 LSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHEFLVGDNSHPQSEEIY 575



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 19/277 (6%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD-DLPEKYV-- 277
           L+D+  KC  L S ++I   ++   +V+   ++   A F    + + I D   P  ++  
Sbjct: 12  LLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANF----LGKHITDVHYPCNFLKQ 67

Query: 278 -------VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                   P N +I GY   +    A+ ++      G  PD  T    L +C++   + +
Sbjct: 68  FDWSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGE 127

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
               H    K     ++ +   LV +Y+ CG+   A +VF +M  R+ +++T +I G   
Sbjct: 128 VRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVK 187

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            G   +AIS F  M    + P+  TF+ IL AC   G ++ G+     +        +L 
Sbjct: 188 TGLFNEAISLFLRM---NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCL-YGEELV 243

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             + ++D+  +   + +A ++   MP   D++ W ++
Sbjct: 244 VCNAVLDMYMKCDSVTDARKMFDEMP-EKDIISWTSM 279


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/548 (39%), Positives = 324/548 (59%), Gaps = 41/548 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++F  N  I+ ++   +  E+  LY+ + RN    PD+FT+ +L K CA     + G EI
Sbjct: 225 DAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEI 284

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             HV+ +GF +D+Y   A++ ++   G +  A  +FDE   R+ VSW +LI G+VRSG  
Sbjct: 285 HSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDM 344

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A +LF  M    +E D                                       N +
Sbjct: 345 DNAGKLFDQM----IEKDSAAF-----------------------------------NTM 365

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +D YVK G + SA ++FD M  ++VVS T MI GY+  G LD AR +FD +PEK +  WN
Sbjct: 366 IDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWN 425

Query: 282 AIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           A+I GY Q K+  EAL LFHEMQ+T  ++PD VT V  L A + LGALD G W+HRF+ +
Sbjct: 426 AMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR 485

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +  +    +GTAL+DMYAKCG I K+  VF  MPE+ + ++ A+I   A++G+A +A+  
Sbjct: 486 KKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGL 545

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F EM   G MP+EIT +G+LSAC H GLV+EG+++F  M   F L+PK++HY CMVDLLG
Sbjct: 546 FMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLG 604

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L+EAE+L+ SMP  A+ ++  +  FAC    +V+  ER   + ++++  + G Y++
Sbjct: 605 RAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIM 664

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L N+Y +   W+EA +V+ +M   GV+K  GCS+IEV+  ++EF+  D+ HP+ E I+  
Sbjct: 665 LRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSV 724

Query: 581 LVQLTRHF 588
           L QL  H 
Sbjct: 725 LGQLWVHM 732



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 43/358 (12%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + LF+ + + +  SW   I G++ +G M  A  L+ QM+       D+  +  +    
Sbjct: 315 CARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEK-----DSAAFNTMIDAY 369

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
             LG      ++F  +     +  +     +I+ + S G+L  A ++FD    +NL SWN
Sbjct: 370 VKLGDMCSARKLFDEMP----ERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWN 425

Query: 150 SLINGFVRSGFPREAIRLFRDMQ-LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           ++I+G+ ++  P EA++LF +MQ    +EPDEVT++ ++ A A L  L+LG  +H ++  
Sbjct: 426 AMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR 485

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L     +  AL+DMY KCG++  +  +FD+M                           
Sbjct: 486 KKLDRATNVGTALIDMYAKCGEIVKSRGVFDNM--------------------------- 518

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
               PEK    WNA+I  +    R+KEAL LF EM   G  P+ +T +  LSAC+  G +
Sbjct: 519 ----PEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLV 574

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           ++G    + +E+      +     +VD+  + G + +A ++   MP E N +  ++ +
Sbjct: 575 EEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFL 632



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 25/330 (7%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S  I     S + NLD    +   +   N FSWN  I G+ +  +  EA+ L+ +M    
Sbjct: 392 SWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTT 451

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
              PD  T   +    A LG   LG  +   V +   D    V  A+I ++  CG++  +
Sbjct: 452 SLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKS 511

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VFD    +   SWN+LIN F  +G  +EA+ LF +M  +   P+E+TMIG++SAC   
Sbjct: 512 RGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHS 571

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM---VNKTVVSCT 250
             +  G+     + E GLT  +     ++D+  + G L+ AE++ +SM    N  ++S  
Sbjct: 572 GLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSF 631

Query: 251 TMIVGYAKFGFLDIAR--KIFDDLPEKYVVPWN-----AIIGGYVQAKRSKEALALFHEM 303
               GY+K    D+AR  ++  +  +  +  WN      +   Y   KR KEA  +   M
Sbjct: 632 LFACGYSK----DVARAERVLKEAIK--MEAWNDGNYIMLRNLYANEKRWKEADEVKGLM 685

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           +  G+K +A         CS +  +D  +W
Sbjct: 686 RRNGVKKEA--------GCSAI-EVDSRVW 706


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 324/547 (59%), Gaps = 41/547 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++F  N  I+ ++   +  E+  LY+ + RN    PD+FT+ +L K CA     + G EI
Sbjct: 51  DAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEI 110

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             HV+ +GF +D+Y   A++ ++   G +  A  +FDE   R+ VSW +LI G+VRSG  
Sbjct: 111 HSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDM 170

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A +LF  M    +E D                                       N +
Sbjct: 171 DNAGKLFDQM----IEKDSAAF-----------------------------------NTM 191

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +D YVK G + SA ++FD M  ++VVS T MI GY+  G LD AR +FD +PEK +  WN
Sbjct: 192 IDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWN 251

Query: 282 AIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           A+I GY Q K+  EAL LFHEMQ+T  ++PD VT V  L A + LGALD G W+HRF+ +
Sbjct: 252 AMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR 311

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +  +    +GTAL+DMYAKCG I K+  VF  MPE+ + ++ A+I   A++G+A +A+  
Sbjct: 312 KKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGL 371

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F EM   G MP+EIT +G+LSAC H GLV+EG+++F  M   F L+PK++HY CMVDLLG
Sbjct: 372 FMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLG 430

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L+EAE+L+ SMP  A+ ++  +  FAC    +V+  ER   + ++++  + G Y++
Sbjct: 431 RAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIM 490

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L N+Y +   W+EA +V+ +M   GV+K  GCS+IEV+  ++EF+  D+ HP+ E I+  
Sbjct: 491 LRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSV 550

Query: 581 LVQLTRH 587
           L QL  H
Sbjct: 551 LGQLWVH 557



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 43/358 (12%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + LF+ + + +  SW   I G++ +G M  A  L+ QM+       D+  +  +    
Sbjct: 141 CARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEK-----DSAAFNTMIDAY 195

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
             LG      ++F  +     +  +     +I+ + S G+L  A ++FD    +NL SWN
Sbjct: 196 VKLGDMCSARKLFDEMP----ERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWN 251

Query: 150 SLINGFVRSGFPREAIRLFRDMQ-LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           ++I+G+ ++  P EA++LF +MQ    +EPDEVT++ ++ A A L  L+LG  +H ++  
Sbjct: 252 AMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR 311

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L     +  AL+DMY KCG++  +  +FD+M                           
Sbjct: 312 KKLDRATNVGTALIDMYAKCGEIVKSRGVFDNM--------------------------- 344

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
               PEK    WNA+I  +    R+KEAL LF EM   G  P+ +T +  LSAC+  G +
Sbjct: 345 ----PEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLV 400

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           ++G    + +E+      +     +VD+  + G + +A ++   MP E N +  ++ +
Sbjct: 401 EEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFL 458



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 25/321 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S + NLD    +   +   N FSWN  I G+ +  +  EA+ L+ +M       PD  T 
Sbjct: 227 SSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTI 286

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +    A LG   LG  +   V +   D    V  A+I ++  CG++  +  VFD    
Sbjct: 287 VSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPE 346

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +   SWN+LIN F  +G  +EA+ LF +M  +   P+E+TMIG++SAC     +  G+  
Sbjct: 347 KETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRW 406

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM---VNKTVVSCTTMIVGYAKF 259
              + E GLT  +     ++D+  + G L+ AE++ +SM    N  ++S      GY+K 
Sbjct: 407 FKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSK- 465

Query: 260 GFLDIAR--KIFDDLPEKYVVPWN-----AIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
              D+AR  ++  +  +  +  WN      +   Y   KR KEA  +   M+  G+K +A
Sbjct: 466 ---DVARAERVLKEAIK--MEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEA 520

Query: 313 VTTVHCLSACSQLGALDDGIW 333
                    CS +  +D  +W
Sbjct: 521 --------GCSAI-EVDSRVW 532


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 338/578 (58%), Gaps = 42/578 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +  T LIS  FA SRL+    +S++ N++Y   +   +  PNSF  N  ++ + E+    
Sbjct: 34  LITTNLISDTFAASRLLD-SVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPE 92

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+  Y +M R  G   DN+TYP + K C ++     G  + G  +K GF  D++V N +
Sbjct: 93  RALRFYAEM-RKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGL 151

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  CG+ G A  VFD    ++LVSWNS++ G+V  G    A  +F +M     E D 
Sbjct: 152 ISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP----ERDV 207

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY-VKCGKLESAEEIFD 239
           V+                     W I              ++D Y  K G++  A   FD
Sbjct: 208 VS---------------------WSI--------------MIDGYGKKMGEVNRARVFFD 232

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           SM  + +VS  +MI GYAK G +++AR+IFB + +K V+ W+ +I GY   + SKEAL L
Sbjct: 233 SMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNL 292

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M   GIKPD V+ V  +SACSQLGALD G WIH ++++    L++V+ TALVDMY K
Sbjct: 293 FRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLK 352

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+  +A  +F+ MPERN +++  +I GL ++G   +A+  F +M    +  D++ FLG+
Sbjct: 353 CGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGV 412

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H  LV EG   F QM  ++RL PKL+HY C+VDLLGR+G L++ + +I+SMPM  
Sbjct: 413 LMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKP 472

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           +  +WG+L  ACR+H NV++ E    +L EL   DSG+YVL++N+Y D  MWE   ++RK
Sbjct: 473 NAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRK 532

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +M+ER ++K  G S IEV+G + EF+  +KSH   E+I
Sbjct: 533 LMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEI 570


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/515 (42%), Positives = 323/515 (62%), Gaps = 5/515 (0%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           N+ IR         + + +Y   LR  G   D+FTYP + +   +L +   G +     L
Sbjct: 15  NLLIRTLARRSSHADVMAVYYD-LRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATL 73

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           K GF  D Y  ++++ ++   G L  A  VFDE   R +V WN ++  +VR G   EA+ 
Sbjct: 74  KTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVA 133

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT-LTVPLANALMDMY 225
           L  +M+  R+ PD VT++  ++AC++  DL+LGR+IH Y+   G+T  ++P+ANAL+DMY
Sbjct: 134 LAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMD--GVTGFSLPVANALLDMY 191

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           VK G LE A  +F+ M ++ VVS TT++ GYA  G +D AR +F    EK ++ W A+I 
Sbjct: 192 VKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMIN 251

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
            YVQ     EAL+LF +MQ   I+PD  T V  L+ C+ LGALD G  IH+F E  N  L
Sbjct: 252 AYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKL 311

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           + VLGTAL+DMYAKCG++ K+++VF  M  R++  +TAII GLA +G+A  A+  F +M 
Sbjct: 312 DAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDME 371

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
                PD +TF+G+LSACCHGGLVDEGRK F  M  ++R+ P+++HYSC+V+LLGR+G L
Sbjct: 372 RSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQL 431

Query: 466 EEAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           +EAE+LI+S+P+  D + ++GAL  AC+  GNV + ER   ++ +   Q   + +L++N+
Sbjct: 432 DEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSNV 491

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
           Y  ++ WE+  +VR  M    V+K  GCS IEV G
Sbjct: 492 YATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 176/382 (46%), Gaps = 69/382 (18%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            L+   K+   +       WN+ +R ++  G+  EAV L ++M R G   PD  T     
Sbjct: 96  RLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMER-GRLTPDRVTLLTAL 154

Query: 87  KVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
             C+  G   LG +I  ++  + GF +   V NA++ ++V  G L  A N+F++   RN+
Sbjct: 155 TACSRAGDLSLGRKIHAYMDGVTGFSLP--VANALLDMYVKNGCLEEAVNLFEKMPSRNV 212

Query: 146 VSWNSL-------------------------------INGFVRSGFPREAIRLFRDMQLE 174
           VSW +L                               IN +V+ G   EA+ LFRDMQ+ 
Sbjct: 213 VSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMH 272

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
           ++EPD  T++ +++ CA L  L+ G+ IH +     + L   L  AL+DMY KCG +E +
Sbjct: 273 QIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKS 332

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            E+F+ M  +   + T +I G A  G                            QA R  
Sbjct: 333 VEVFERMEGRDTKAWTAIICGLATNG----------------------------QAGR-- 362

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL--NVVLGTA 352
            AL LF +M+ +  KPD+VT +  LSAC   G +D+G    R + KE + +   V   + 
Sbjct: 363 -ALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAM-KEVYRIRPRVEHYSC 420

Query: 353 LVDMYAKCGNIAKALQVFHEMP 374
           LV++  + G + +A ++   +P
Sbjct: 421 LVNLLGRAGQLDEAEKLIKSIP 442


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 326/548 (59%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +   + NP++   N  +R    +    + + LY  +        D F++P L K  + + 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G EI G   KLGF  D ++   +I ++ SC  +  A  +FD+ C  + V+WN +I+
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G+ ++G   +A+RLF DM+   ++PD V +  ++SAC    +L+ GR IH ++ ++G  +
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              L  AL++MY  CG ++ A +I+D + +K ++  T M+ GYAK G +  AR IFD + 
Sbjct: 256 DSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMI 315

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           E+ +V W+A+I GY ++ + +EAL LF EM      PD +T +  +SACS +GAL    W
Sbjct: 316 ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANW 375

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH ++++  F   + +  AL+DMYAKCGN+ KA +VF  MP +N ++++++I   A+HG 
Sbjct: 376 IHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGN 435

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           A  AI  F  M  V + P+ +TF+G+L AC H GLV+EG K F+ M +   +SP  +HY 
Sbjct: 436 ADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYG 495

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CMVDL  R+  L +A +LI +MP A +V++WG+L  AC++HG   +GE AA +LLEL+P 
Sbjct: 496 CMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPD 555

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
             G  V+L+N+Y     W + G +RK M  +G+ K    S IE+N  ++ F++ D+ H +
Sbjct: 556 HDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQ 615

Query: 574 LEQIYDCL 581
            ++IY+ L
Sbjct: 616 SDEIYEKL 623


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 335/566 (59%), Gaps = 8/566 (1%)

Query: 20  CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN 79
           CA ++S  LD    I   +   +  SWN  I GF + G+  EA+  + QM    G   + 
Sbjct: 93  CAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQM-HGHGFLVNE 151

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
           +++      CA L    LG +I   V +  +  D+Y+ +A++ ++  CG +  A +VFDE
Sbjct: 152 YSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDE 211

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
             VR+ VSWNSLI  + ++G   EA+++F +M    VEPDEVT+  +VSACA +  +  G
Sbjct: 212 MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEG 271

Query: 200 REIHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           ++IH  + +       + L NAL+DMY KC ++  A  IFD M  ++VVS T+M+ GYAK
Sbjct: 272 QQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAK 331

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
              + +AR +F ++  K V+ WNA+I G  Q   ++EAL LF  ++   + P   T  + 
Sbjct: 332 ASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNL 391

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNL------NVVLGTALVDMYAKCGNIAKALQVFHE 372
           L+AC+ L  L  G   H  + K  F        +V +G +L+DMY KCG++    +VF  
Sbjct: 392 LNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQH 451

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M E++ +++ A+I G A +G    A+  F +M+  G  PD +T +G+L AC H GL+DEG
Sbjct: 452 MLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEG 511

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           R YF  M++   L P   HY+CMVDLLGR+G LEEA+ LI  M M  D +VWG+L  AC+
Sbjct: 512 RYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACK 571

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           +H N+ +GE    KLLE+DP++SG YVLL+NMY ++  W+   +VRK+M +RGV K PGC
Sbjct: 572 VHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGC 631

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIY 578
           S IE+ G L  F+V+DK H   ++IY
Sbjct: 632 SWIEIQGELNVFMVKDKRHARKKEIY 657



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 182/387 (47%), Gaps = 67/387 (17%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D+  +  L   CA          +   ++K  F  + ++ N +I V+  CG + +A  +F
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM----------------QLERVEP--- 178
           D    RN+ SWNS+I  F +SGF  +A+ +F  M                Q  R +    
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 179 ------------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
                       +E +    +SACA L+DL LG +IH  +  S     V + +AL+DMY 
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KCG++E A+ +FD M  ++ VS  ++I  Y + G +D                       
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVD----------------------- 234

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNL 345
                   EAL +F EM   G++PD VT    +SAC+ + A+ +G  IH R ++ + F  
Sbjct: 235 --------EALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRN 286

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +++LG AL+DMYAKC  I +A  +F  MP R+ ++ T+++ G A   K   A   FS M 
Sbjct: 287 DLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNM- 345

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEG 432
              ++ D IT+  +++ C   G  +E 
Sbjct: 346 ---MVKDVITWNALIAGCTQNGENEEA 369



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 162/340 (47%), Gaps = 30/340 (8%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           +++ CA+         +H  I +S       + N L+D+Y KCG ++ A ++FD M+ + 
Sbjct: 25  LLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERN 84

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           + S  ++I  + K GFLD A  IF+ +P+     WN++I G+ Q  R  EAL  F +M  
Sbjct: 85  IFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHG 144

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G   +  +    LSAC+ L  L  G  IH  + + N+  +V +G+ALVDMY+KCG +  
Sbjct: 145 HGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEY 204

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A  VF EM  R+ +++ ++I     +G   +A+  F EMI  G+ PDE+T   ++SAC  
Sbjct: 205 AQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACAT 264

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------- 476
              + EG++  A++         L   + ++D+  +   + EA  +   MP         
Sbjct: 265 ISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETS 324

Query: 477 ---------------------MAADVVVWGALFFACRLHG 495
                                M  DV+ W AL   C  +G
Sbjct: 325 MVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNG 364


>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
          Length = 530

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 318/514 (61%), Gaps = 3/514 (0%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           NV IR     G     + +Y   LR  G   D+FTYP + +    L L   G +     +
Sbjct: 18  NVLIRTLARRGSFARVMAVYYD-LRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAI 76

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           K GF  D Y  ++++ ++   G + +A  VFDE   R LV WN ++  ++R G    A+ 
Sbjct: 77  KTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVA 136

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L   M+   V PD VT++  V+AC++  DL+LGR IH Y+ ++     +P+ANAL+DMY 
Sbjct: 137 LSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYM-DNVFGFNLPVANALLDMYT 195

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K   LE A ++F+ M  + ++S T ++ GY   G LD AR +F+   EK ++ W A+I  
Sbjct: 196 KNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINA 255

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            VQ    +EAL LF +MQ   ++PD  T V  L+ C+ LGALD G WIH++ E+    ++
Sbjct: 256 CVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKID 315

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            VLGTAL+DMY+KCG+I K+L+VF  M  R++  +TAII GLA +G+A  A+  F +M  
Sbjct: 316 AVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQR 375

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             + PD +TF+G+LSACCHGGLVDEGRK F  M  ++++ P+++HYSC+V+LLGR+GLL+
Sbjct: 376 SKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLD 435

Query: 467 EAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           EAE+LI  +P+  D + ++GAL  AC+ HGNV + ER   ++ E D Q + + +L++N+Y
Sbjct: 436 EAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVY 495

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
             ++ WE+  +VR  M    V+KT GCS IEV G
Sbjct: 496 ATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKG 529



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 172/379 (45%), Gaps = 63/379 (16%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D   K+   + +     WN+ +R ++  G+   AV L +QM R+G T PD  T     
Sbjct: 99  RVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVT-PDRVTLVTAV 157

Query: 87  KVCA-----SLGLRFLGY--EIFGHVLKLGFD-VDMYVHNAVIH---------------- 122
             C+     SLG R   Y   +FG  L +    +DMY  N  +                 
Sbjct: 158 TACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIIS 217

Query: 123 --VFVS----CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
             + VS     G L  A  +F++   ++L+ W ++IN  V+ G   EA+ LFRDMQ++RV
Sbjct: 218 WTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRV 277

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EPD  T++ +++ CA L  L+ G  IH Y  +  + +   L  AL+DMY KCG +E + E
Sbjct: 278 EPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLE 337

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  +   + T +I G A  G                            QA R   A
Sbjct: 338 VFWRMQGRDATAWTAIICGLATNG----------------------------QAGR---A 366

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVD 355
           L LF +MQ + +KPD VT +  LSAC   G +D+G    H   E       V   + LV+
Sbjct: 367 LELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVN 426

Query: 356 MYAKCGNIAKALQVFHEMP 374
           +  + G + +A ++  ++P
Sbjct: 427 LLGRAGLLDEAERLIGDVP 445


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/544 (40%), Positives = 318/544 (58%), Gaps = 40/544 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +S SWN  + G++E G + EA  +Y QM       P+         + AS          
Sbjct: 278 DSVSWNSILAGYIEIGNVEEAKHIYHQM-------PER-------SIIAS---------- 313

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
                           N++I +F   G +  AC +FDE   +++V+W++LI  F ++   
Sbjct: 314 ----------------NSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMY 357

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EAIR F  M    V  DEV  +  +SACA L  +N+G+ IH    + G    + L NAL
Sbjct: 358 EEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNAL 417

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + MY KCG +  A ++FD      ++S  +MI GY K   +D A+ IFD +PEK VV W+
Sbjct: 418 IYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWS 477

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           ++I GY Q     E LALF EMQ +G KPD  T V  +SAC++L AL+ G W+H +I++ 
Sbjct: 478 SMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN 537

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
              +NV+LGT L+DMY KCG +  AL+VF+ M E+   T+ A+I GLA++G    ++  F
Sbjct: 538 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 597

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           S M    + P+EITF+G+L AC H GLVDEG+ +F  M    ++ P +KHY CMVDLLGR
Sbjct: 598 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 657

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L+EAE+L+  MPM  DV  WGAL  AC+ HG+  +G R   KL+EL P   G +VLL
Sbjct: 658 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLL 717

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +N+Y     W++  ++R MM +  V K PGCS IE NG+++EF+  DK+HP+++ I D L
Sbjct: 718 SNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDML 777

Query: 582 VQLT 585
           V++ 
Sbjct: 778 VEMA 781



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 224/517 (43%), Gaps = 110/517 (21%)

Query: 35  LFNVQNPNSFSWNVAI----RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           L  ++ P + +W +      R +++T     A  LYK ML N     DN+TYPLL + C+
Sbjct: 166 LLLMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLSNY-LGADNYTYPLLIQACS 224

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
                +   ++  HVLKLGFD D+YV                                N+
Sbjct: 225 IRRSEWEAKQVHNHVLKLGFDSDVYVR-------------------------------NT 253

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           LIN F       +A R+F          +E +++  VS               W      
Sbjct: 254 LINCFSVCSNMTDACRVF----------NESSVLDSVS---------------W------ 282

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
                   N+++  Y++ G +E A+ I+  M  +++++  +MIV +   G +  A K+FD
Sbjct: 283 --------NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 334

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
           ++ EK +V W+A+I  + Q +  +EA+  F  M   G+  D V  V  LSAC+ L  ++ 
Sbjct: 335 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE------------------ 372
           G  IH    K      + L  AL+ MY+KCG+I  A ++F E                  
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 373 -------------MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
                        MPE++ ++++++I G A +    + ++ F EM   G  PDE T + +
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           +SAC     +++G+   A +     L+  +   + ++D+  + G +E A ++   M +  
Sbjct: 515 ISACARLAALEQGKWVHAYIKR-NGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEK 572

Query: 480 DVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQD 514
            +  W AL     ++G V  S+   + MK   + P +
Sbjct: 573 GISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 609



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 122/250 (48%), Gaps = 5/250 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D    I  ++   +  SW+  I G+ +     E + L+++M +  G +PD  T   +  
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM-QMSGFKPDETTLVSVIS 516

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA L     G  +  ++ + G  +++ +   +I +++ CG +  A  VF     + + +
Sbjct: 517 ACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST 576

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY-- 205
           WN+LI G   +G    ++ +F +M+   V P+E+T +G++ AC  +  ++ G+  H+Y  
Sbjct: 577 WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH-HFYSM 635

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDI 264
           I +  +   V     ++D+  + GKL+ AEE+ + M +   V +   ++    K G  ++
Sbjct: 636 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 695

Query: 265 ARKIFDDLPE 274
            R++   L E
Sbjct: 696 GRRVGRKLIE 705


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/549 (39%), Positives = 327/549 (59%), Gaps = 35/549 (6%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLET-GKMREAVDLYKQMLRNGGTRPDNFTYPL 84
           K+ +  + +   +  PN +++N+ IRG   T  K    ++ Y QM ++ G RP+NFTYP 
Sbjct: 73  KDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQM-KDFGIRPNNFTYPF 131

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           +F  CA+L +   G      VLK G   D +V +++I ++  CG+LG A  VFDE   ++
Sbjct: 132 VFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKD 191

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           LVSWNS+I+G+ R G+  +A+ LF +M+    EPDE+T++ ++ AC  L DL LG  I  
Sbjct: 192 LVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEG 251

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           ++ E+ + L   + +AL+ MY KCG L SA  +FD MV K VV+   MI GYA+ G  D 
Sbjct: 252 FVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSD- 310

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                                         EA+ LF  M+ +G+ PD +T V  LSAC+ 
Sbjct: 311 ------------------------------EAIILFSGMRESGVNPDKITLVGVLSACAS 340

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           +GALD G W+  +  +     ++ + TAL+DMYAKCG++  AL+VF +MP++N +++ A+
Sbjct: 341 IGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAM 400

Query: 385 IGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           I  LA HG+  +++S F  M   G  + P++I+F+G+LSAC H GLVDEGR+ F  MSS 
Sbjct: 401 ISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSS 460

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F L PK++H+SCMVDLL R+G + EA   I  MP   D VV GAL  AC+   NV + ER
Sbjct: 461 FGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSER 520

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
               LLE++P +SG Y++ + ++ +   W+++ ++R +M +RGV KTPGCS IE+   ++
Sbjct: 521 VMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVH 580

Query: 563 EFIVRDKSH 571
           EF   D  H
Sbjct: 581 EFHAGDVLH 589


>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
          Length = 530

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/514 (41%), Positives = 318/514 (61%), Gaps = 3/514 (0%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           NV IR     G     + +Y   LR  G   D+FTYP + +    L L   G +     +
Sbjct: 18  NVLIRTLARRGSFARVMAVYYD-LRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAV 76

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           K GF  D Y  ++++ ++   G + +A  VFDE   R LV WN ++  ++R G+   A+ 
Sbjct: 77  KTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVA 136

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L   M+   V PD VT++  V+AC++  DL+LGR IH Y+ ++     +P+ANAL+DMY 
Sbjct: 137 LSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYM-DNVFGFNLPVANALLDMYT 195

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K   LE A ++F+ M  + ++S T ++ GY   G LD AR +F+   EK ++ W A+I  
Sbjct: 196 KNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINA 255

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            VQ    +EAL LF +MQ   ++PD  T V  L+ C+ LGALD G WIH++ E+    ++
Sbjct: 256 CVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKID 315

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            VLGTAL+DMY+KCG+I K+L+VF  M  R++  +TAII GLA +G+A  A+  F +M  
Sbjct: 316 AVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQR 375

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             + PD +TF+G+LSACCHGGLVDEGRK F  M  ++++ P+++HYSC+V+LLGR+GLL+
Sbjct: 376 SKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLD 435

Query: 467 EAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           EAE+LI  +P+  D + ++GAL  AC+ HGNV + ER   ++ E D Q + + +L++N+Y
Sbjct: 436 EAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVY 495

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
             ++ WE+  +VR  M    V+K  GCS IEV G
Sbjct: 496 ATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKG 529



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 171/379 (45%), Gaps = 63/379 (16%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D   K+   + +     WN+ +R ++  G    AV L +QM R+G T PD  T     
Sbjct: 99  RVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVT-PDRVTLVTAV 157

Query: 87  KVCA-----SLGLRFLGY--EIFGHVLKLGFD-VDMYVHNAVIH---------------- 122
             C+     SLG R   Y   +FG  L +    +DMY  N  +                 
Sbjct: 158 TACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIIS 217

Query: 123 --VFVS----CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
             + VS     G L  A  +F++   ++L+ W ++IN  V+ G   EA+ LFRDMQ++RV
Sbjct: 218 WTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRV 277

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EPD  T++ +++ CA L  L+ G  IH Y  +  + +   L  AL+DMY KCG +E + E
Sbjct: 278 EPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLE 337

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  +   + T +I G A  G                            QA R   A
Sbjct: 338 VFWRMQGRDATAWTAIICGLATNG----------------------------QAGR---A 366

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVD 355
           L LF +MQ + +KPD VT +  LSAC   G +D+G    H   E       V   + LV+
Sbjct: 367 LELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVN 426

Query: 356 MYAKCGNIAKALQVFHEMP 374
           +  + G + +A ++  ++P
Sbjct: 427 LLGRAGLLDEAERLIGDVP 445


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/548 (39%), Positives = 322/548 (58%), Gaps = 37/548 (6%)

Query: 26  KNLDYCTKILFNVQ-NPNSFSWNVAIRGFLET-GKMREAVDLYKQMLRNGGTRPDNFTYP 83
           K+  Y T I  ++  +PN +++N+ +R    T       + LY QM +     P+NFT+P
Sbjct: 63  KDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQM-KTLNISPNNFTFP 121

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +F  CA+L    +       V KLG D D +  N+++ ++  CG+ G+A  VFDE   +
Sbjct: 122 FVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEK 181

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREI 202
           +LVSWNSL++G+ + GF REA+ +F  ++ E   EPDE++++ ++ AC +L DL LGR +
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWV 241

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
             ++ E G+ +   + +AL+ MY KCG+L S+                            
Sbjct: 242 EGFVVERGMKVNSYIGSALISMYSKCGELVSS---------------------------- 273

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
              R+IFD +P +  + WNA I  Y Q   + EA++LFH M+  G+ P+ VT    LSAC
Sbjct: 274 ---RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + +GALD G  +  +        ++ + TAL+DMYAKCG++  A +VF++MP +N  ++ 
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390

Query: 383 AIIGGLALHGKALDAISYFSEMIGVG--LMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           A+I  LA HGKA +A+S F  M   G    P++ITF+ +LSAC H GLVDEG + F  MS
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMS 450

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           ++F L PK++HYSCMVDLL R+G L EA  +I  MP   D V  GAL  AC+   NV IG
Sbjct: 451 TLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIG 510

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ER    LLELDP +SG Y++ + +Y + NMW++A ++R +M E GV KTPGCS IEV   
Sbjct: 511 ERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQ 570

Query: 561 LYEFIVRD 568
           L EF+  D
Sbjct: 571 LREFLSGD 578


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/548 (39%), Positives = 322/548 (58%), Gaps = 37/548 (6%)

Query: 26  KNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKMRE-AVDLYKQMLRNGGTRPDNFTYP 83
           K+  Y T I  ++  +PN +++N+ +R    T       + LY QM +     P+NFT+P
Sbjct: 63  KDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQM-KTLNISPNNFTFP 121

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +F  CA+L    +       V KLG D D +  N+++ ++  CG+ G+A  VFDE   +
Sbjct: 122 FVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEK 181

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREI 202
           +LVSWNSL++G+ + GF REA+ +F  ++ E   EPDE++++ ++ AC +L DL LGR +
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWV 241

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
             ++ E G+ +   + +AL+ MY KCG+L S+                            
Sbjct: 242 EGFVVERGMKVNSYIGSALISMYSKCGELVSS---------------------------- 273

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
              R+IFD +P +  + WNA I  Y Q   + EA++LFH M+  G+ P+ VT    LSAC
Sbjct: 274 ---RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + +GALD G  +  +        ++ + TAL+DMYAKCG++  A +VF++MP +N  ++ 
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390

Query: 383 AIIGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           A+I  LA HGKA +A+S F  M   G    P++ITF+ +LSAC H GLVDEG + F  MS
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMS 450

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           ++F L PK++HYSCMVDLL R+G L EA  +I  MP   D V  GAL  AC+   NV IG
Sbjct: 451 TLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIG 510

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ER    LLELDP +SG Y++ + +Y + NMW++A ++R +M E GV KTPGCS IEV   
Sbjct: 511 ERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQ 570

Query: 561 LYEFIVRD 568
           L EF+  D
Sbjct: 571 LREFLSGD 578


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 342/578 (59%), Gaps = 3/578 (0%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  + L+ F A  E   LD   K+   +   N  SW   I G+      ++AVDL+ +M+
Sbjct: 169 FVQNSLVHFYA--ECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMV 226

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           R+    P++ T   +   CA L     G +++  +   G +V+  + +A++ +++ C  +
Sbjct: 227 RDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAI 286

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            +A  +FDE    NL   N++ + +VR G  +EA+ +   M    + PD ++M+  +S+C
Sbjct: 287 DIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSC 346

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           +QL ++  G+  H Y+  +G      + NAL+DMY+KC + ++A  IFD M NKTVV+  
Sbjct: 347 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 406

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IK 309
           +++ GY + G +D A + F+ +PEK +V WN II   VQ    +EA+ +FH MQ+   + 
Sbjct: 407 SIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVN 466

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D VT +   SAC  LGALD   WI+ +IEK    L+V LGT LVDM+++CG+   A+ +
Sbjct: 467 VDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSI 526

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F+ +  R+   +TA IG +A+ G    AI  F+EMI  GL PD + F+G L+ACCHGGLV
Sbjct: 527 FNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLV 586

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            +G++ F  M  +  +SP+  HY CMVDLLGR+GLLEEA QLI+ MP   + V+W +L  
Sbjct: 587 QQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLA 646

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+ GNV +   AA K+  L P+ +G YVLL+N+Y  +  W +  KVR  M+E+G+ K 
Sbjct: 647 ACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP 706

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           PG S I++ G  +EF   D+SHPE+ +I   L +L++ 
Sbjct: 707 PGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQR 744



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 257/521 (49%), Gaps = 73/521 (14%)

Query: 1   MTITGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNS-FSWNVAIRGFLETGK 58
           +T  GL     A ++L+A  C +   ++L +  ++  N ++  + F +N  IRG+  +G 
Sbjct: 54  LTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGL 113

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
            +EA+ L+ +M+ N G  PD +T+P    VCA    +  G +I G ++K+ +  D++V N
Sbjct: 114 CKEAILLFIRMM-NSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQN 172

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL-FRDMQLERVE 177
           +++H +  CG+L  A  VFDE   RN+VSW S+I G+ R  F ++A+ L FR ++ E V 
Sbjct: 173 SLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVI 232

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+ VTM+ ++SACA+LEDL  G +++ +I +SG+ +   + +AL+DMY+KC  ++ A+ +
Sbjct: 233 PNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRL 292

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD      +  C                               NA+   YV+   +KEAL
Sbjct: 293 FDEYGASNLDLC-------------------------------NAMASNYVRQGLTKEAL 321

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            + + M  +GI+PD ++ +  +S+CSQL  +  G   H ++ +  F     +  AL+DMY
Sbjct: 322 GVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMY 381

Query: 358 AKC-------------------------------GNIAKALQVFHEMPERNSLTYTAIIG 386
            KC                               G +  A + F+ MPE+N +++  II 
Sbjct: 382 MKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIIS 441

Query: 387 GLALHGKALDAISYFSEMIGVGLMP-DEITFLGILSACCHGGLVDEGR--KYFAQMSSIF 443
            L       +AI  F  M     +  D +T + I SAC H G +D  +   Y+ + +   
Sbjct: 442 ALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKN--- 498

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           R+   ++  + +VD+  R G  E A  +  S+    DV  W
Sbjct: 499 RIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 538


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 323/557 (57%), Gaps = 40/557 (7%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L Y   I  ++QNP    +N  IR    +    EA+ LY  ML++G  +PD+ TYP + K
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSG-LKPDHMTYPFVIK 203

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C    + + G  +  HV+K GF+ D Y+ +++IH++ +  DLG A  +F+    R++VS
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 263

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G+V+                  VE     M+     C  +        I W   
Sbjct: 264 WNAMIDGYVK-----------------HVEMGHARMVFDRMVCRDV--------ISW--- 295

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                      N +++ Y   GK++ A+ +FD M  + +VS  +M+ G+ K G ++ A  
Sbjct: 296 -----------NTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFG 344

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F ++P + VV WN+++  Y Q  +  EALALF +M+A G+KP   T V  LSAC+ LGA
Sbjct: 345 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 404

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           LD G+ +H +I      +N ++GTALVDMYAKCG I+ A QVF+ M  ++ L +  II G
Sbjct: 405 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 464

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           +A+HG   +A   F EM   G+ P++ITF+ ILSAC H G+VDEG+K    MSS + + P
Sbjct: 465 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEP 524

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           K++HY C++DLL R+G LEEA +LI +MPM  +    GAL   CR+HGN  +GE    +L
Sbjct: 525 KVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRL 584

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           + L P  SG Y+LL+N+Y  +  W++A KVR +M+  G+ K PG S IE+ G+++ F+  
Sbjct: 585 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 644

Query: 568 DKSHPELEQIYDCLVQL 584
           D SHPE  +IY+ L ++
Sbjct: 645 DWSHPESNKIYEKLNEI 661


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 326/550 (59%), Gaps = 41/550 (7%)

Query: 26  KNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKMRE-AVDLYKQMLRNGGTRPDNFTYP 83
           KN  Y + +  ++  +PN +++N+ IR    T      A+ L+ +M+    T PDNFT+P
Sbjct: 68  KNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLT-PDNFTFP 126

Query: 84  LLFKVCASLGLRFLGYEIFGHVL--KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
             F  CA+L    L +    H L  KL    D +  +++I  +  CG +  A  VFDE  
Sbjct: 127 FFFLSCANLA--SLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIP 184

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGR 200
            R+ VSWNS+I G+ ++G  REA+ +FR+M + +  EPDE++++ ++ AC +L DL LGR
Sbjct: 185 HRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGR 244

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            +  ++ E G+TL   + +AL+ MY KCG+LES                           
Sbjct: 245 WVEGFVVERGMTLNSYIGSALISMYAKCGELES--------------------------- 277

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
               AR+IFD +  + V+ WNA+I GY Q   + EA+ LFH M+   +  + +T    LS
Sbjct: 278 ----ARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLS 333

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ +GALD G  I  +  +  F  ++ + TAL+DMYAK G++  A +VF +MP++N  +
Sbjct: 334 ACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEAS 393

Query: 381 YTAIIGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + A+I  LA HGKA +A+S F  M   G G  P++ITF+G+LSAC H GLVDEG + F  
Sbjct: 394 WNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDM 453

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           MS++F L PK++HYSCMVDLL R+G L EA  LIR MP   D V  GAL  ACR   NV 
Sbjct: 454 MSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVD 513

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           IGER    +LE+DP +SG Y++ + +Y + NMWE++ ++R +M ++G+ KTPGCS IEV 
Sbjct: 514 IGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVE 573

Query: 559 GLLYEFIVRD 568
             L+EF   D
Sbjct: 574 NHLHEFHAGD 583



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 6/243 (2%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G+  + +  S LI+  A  +   L+   +I   +   +  +WN  I G+ + G   EA+ 
Sbjct: 254 GMTLNSYIGSALISMYA--KCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAIL 311

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+  M  +  T  +  T   +   CA++G   LG +I  +  + GF  D++V  A+I ++
Sbjct: 312 LFHGMKEDCVT-ANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMY 370

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE--RVEPDEVT 182
              G L  A  VF +   +N  SWN++I+     G  +EA+ LF+ M  E     P+++T
Sbjct: 371 AKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDIT 430

Query: 183 MIGMVSACAQLEDLNLGREIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            +G++SAC     ++ G  +   +S   GL   +   + ++D+  + G L  A ++   M
Sbjct: 431 FVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKM 490

Query: 242 VNK 244
             K
Sbjct: 491 PEK 493



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 34/181 (18%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML-RNGGTRPDNFT 81
           ++S +LD   ++  ++   N  SWN  I      GK +EA+ L++ M    GG RP++ T
Sbjct: 371 AKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDIT 430

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           +  L   C   GL   GY +F  +  L                      GL   +   SC
Sbjct: 431 FVGLLSACVHAGLVDEGYRLFDMMSTL---------------------FGLVPKIEHYSC 469

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           + +L++         R+G   EA  L R M     +PD+VT+  ++ AC   +++++G  
Sbjct: 470 MVDLLA---------RAGHLYEAWDLIRKMP---EKPDKVTLGALLGACRSKKNVDIGER 517

Query: 202 I 202
           +
Sbjct: 518 V 518


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/530 (40%), Positives = 333/530 (62%), Gaps = 10/530 (1%)

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE-----IFGHVLKLGFDVDMY 115
           EAV  Y +ML  GG RPD +T+P L K  A+     +        I  HV+K G + + +
Sbjct: 34  EAVAGYVRML-AGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAH 92

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRN----LVSWNSLINGFVRSGFPREAIRLFRDM 171
             +++I ++ + GD   A  V + +C+       V WN+LI+G  RSG    +   F DM
Sbjct: 93  AASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDM 152

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                    VT + ++SAC + +DL LG ++H  + ESG+     + NAL+DMY +CG +
Sbjct: 153 VRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDM 212

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           ++A  +F+ M  +++ S T++I G  + G +D AR +FD +PE+  + W A+I GYVQ  
Sbjct: 213 DAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVG 272

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R ++AL  F  MQ   ++ D  T V  ++AC+QLGAL+ G W   ++ +    ++V +G 
Sbjct: 273 RFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGN 332

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DMY+KCG+I +AL VF +M  R+  T+TAII GLA++G+  +AI  F  M+     P
Sbjct: 333 ALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTP 392

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           DE+TF+G+L+AC H GLVD+GR++F  M+  + +SP + HY C++D+LGR+G L+EA   
Sbjct: 393 DEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDT 452

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           I  MPM  +  +WG L  +CR++GN  IGE AA +LLELDP +S  Y+LL+NMY  SN W
Sbjct: 453 IDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRW 512

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           ++  ++R+++ E+G++K PGCS IE+NG+++EF+  D+SHP  ++IY  L
Sbjct: 513 KDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKL 562



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 145/299 (48%), Gaps = 18/299 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
            S  +D    +  ++   ++ +W   I G+++ G+ R+A++ ++ M +    R D FT  
Sbjct: 239 RSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYM-QICKVRADEFTMV 297

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +   CA LG    G     ++ +LG  +D++V NA+I ++  CG +  A +VF +   R
Sbjct: 298 SVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR 357

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +  +W ++I G   +G   EAI +F  M      PDEVT +G+++AC     ++ GRE  
Sbjct: 358 DKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFF 417

Query: 204 WYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM---VNKTV-----VSCTTMIV 254
             ++E+  ++ TV     L+D+  + GKL+ A +  D M    N T+      SC   + 
Sbjct: 418 LSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCR--VY 475

Query: 255 GYAKFGFLDIAR--KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           G ++ G L   R  ++  D    Y++  N     Y ++ R K+   +   +   GIK +
Sbjct: 476 GNSEIGELAAERLLELDPDNSTAYILLSNM----YAKSNRWKDVRRIRQIIMEKGIKKE 530



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +++    +  ++ N + F+W   I G    G+  EA+D++ +MLR   T PD  T+
Sbjct: 339 SKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQT-PDEVTF 397

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH-NAVIHVFVSCGDLGLACNVFDESC 141
             +   C   GL   G E F  + +        VH   +I V    G L  A +  D+  
Sbjct: 398 VGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMP 457

Query: 142 VR-NLVSWNSLI 152
           ++ N   W +L+
Sbjct: 458 MKPNSTIWGTLL 469


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/462 (44%), Positives = 300/462 (64%), Gaps = 4/462 (0%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G L  A  VF++       + NS+I G+     PR+AI  ++ M L+ ++PD  T   + 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            +C  L +   G+++H + ++ G      + N LM+MY  CG L SA ++FD MVNK+VV
Sbjct: 86  KSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLP-EKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           S  TMI  YA++     A K+F  +     +  WN +I G+V+    +EAL+LF+EMQ +
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G+K D VT    L AC+ LGAL+ G W+H +IEKE   ++V LGTALVDMYAKCG+I  A
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 262

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           ++VF EMPE++ +T+TA+I GLA+ G+ L A+  F EM    + PD ITF+G+L+AC H 
Sbjct: 263 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHA 322

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV+EG  YF  M + + + P ++HY CMVD+LGR+G + EAE LI++MPMA D  V   
Sbjct: 323 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 382

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+HGN+ + ERAA +L+ELDP++ G YVLL+N+Y     WE A K+R++M ER +
Sbjct: 383 LLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI 442

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +K PGCS+IEV G+++EF+  D SHP+  +IY+ L  + R  
Sbjct: 443 KKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRL 484



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 169/569 (29%), Positives = 253/569 (44%), Gaps = 130/569 (22%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T L    F+ S+++AFCA+ +S +L Y   +   + NP +F+ N  IRG+      R
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ L+ Q++   G  PD FT+P LFK C   G+   G ++  H  KLGF  D Y+ N +
Sbjct: 61  QAI-LFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTL 116

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR----------- 169
           ++++ +CG L  A  VFD+   +++VSW ++I  + +   P EAI+LFR           
Sbjct: 117 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCW 176

Query: 170 ---------------------DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                                +MQL  V+ D+VTM  ++ AC  L  L LG+ +H YI +
Sbjct: 177 NIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK 236

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             + + V L  AL+DMY KCG +ESA  +F  M  K V++ T +IVG A  G        
Sbjct: 237 EKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCG-------- 288

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  +  +AL LFHEMQ + +KPDA+T V  L+ACS  G +
Sbjct: 289 -----------------------QGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLV 325

Query: 329 DDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           ++GI + +    K     ++     +VDM  + G IA+A  +   MP             
Sbjct: 326 NEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP------------- 372

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-CHGGLVDEGRKYFAQMSSIFRLS 446
                                + PD    +G+LSAC  HG LV   R   AQ   +  L 
Sbjct: 373 ---------------------MAPDYFVLVGLLSACRIHGNLVVAERA--AQ--QLIELD 407

Query: 447 PK--------LKHYSCMVDLLGRSGLLE-EAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           PK           YS M +      + E   E+ I+  P  + + V G +    +  G+V
Sbjct: 408 PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVK--GDV 465

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYR 526
           S             PQ S IY  L +M R
Sbjct: 466 S------------HPQSSEIYETLDDMMR 482


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 334/561 (59%), Gaps = 8/561 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD    +  ++   +  +WN  + GF +  +  EA+  Y  M+   G   + +T+     
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL-YYFAMMHKEGFVLNEYTFASGLS 160

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ L     G +I   + K     D+Y+ +A++ ++  CG++  A  VFDE   RN+VS
Sbjct: 161 ACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVS 220

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNSLI  + ++G   EA+++F+ M    VEPDEVT+  ++SACA L  + +G+E+H  + 
Sbjct: 221 WNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVV 280

Query: 208 E-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +   L   + L+NA +DMY KC +++ A  IFDSM  + V++ T+M+ GYA       AR
Sbjct: 281 KMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAAR 340

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +F  + E+ VV WNA+I GY Q   ++EAL+LF  ++   + P   T  + L AC+ L 
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLA 400

Query: 327 ALDDGIWIHRFIEKENFNL------NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
            L  G+  H  + K  F        ++ +G +L+DMY KCG + +   VF +M ER+ ++
Sbjct: 401 DLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + A+I G A +G   +A+  F EM+  G  PD IT +G+LSAC H G V+EGR YF+ M+
Sbjct: 461 WNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMT 520

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
             F ++P   HY+CMVDLLGR+G LEEA+ +I  MP+  D V+WG+L  AC++H N+++G
Sbjct: 521 RDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLG 580

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           +  A KL E++  +SG YVLL+NMY +   W +A  VRK+M + GV K PGCS I++ G 
Sbjct: 581 KYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGH 640

Query: 561 LYEFIVRDKSHPELEQIYDCL 581
            + F+V+DKSHP  +QI+  L
Sbjct: 641 AHVFMVKDKSHPRKKQIHSLL 661



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 154/278 (55%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           R +H  + +SG +  V + N L+D Y KCG LE   ++FD M  + V +  +++ G  K 
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           GFLD A  +F  +PE+    WN+++ G+ Q  R +EAL  F  M   G   +  T    L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SACS L  ++ G+ IH  I K     +V +G+ALVDMY+KCGN+  A QVF EM +RN +
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           ++ ++I     +G A++A+  F  M+   + PDE+T   ++SAC     +  G++  A++
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
             + +L   +   +  VD+  +   ++EA  +  SMP+
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 207/494 (41%), Gaps = 113/494 (22%)

Query: 82  YPLLFKVCASLGLRFLGYE-IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           +  L   C  L L  +    +   V+K GF  ++++ N +I  +  CG L     +FD+ 
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDM----------------QLERVEP------ 178
             RN+ +WNS++ G  + GF  EA  LFR M                Q +R E       
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 179 ---------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
                    +E T    +SAC+ L D+N G +IH  I++S     V + +AL+DMY KCG
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +  A+++FD M ++ VVS  ++I  Y + G    A K+F  + E +V            
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWV------------ 249

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVV 348
                              +PD VT    +SAC+ L A+  G  +H R ++ +    +++
Sbjct: 250 -------------------EPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDII 290

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMP-------------------------------ERN 377
           L  A VDMYAKC  I +A  +F  MP                               ERN
Sbjct: 291 LSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERN 350

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++ A+I G   +G+  +A+S F  +    + P   TF  IL AC      D    +  
Sbjct: 351 VVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKAC-----ADLADLHLG 405

Query: 438 QMSSIFRLSPKLKHYS----------CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             + +  L    K  S           ++D+  + G +EE   + R M M  D V W A+
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAM 464

Query: 488 F--FACRLHGNVSI 499
              FA   +GN ++
Sbjct: 465 IIGFAQNGYGNEAL 478


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 328/561 (58%), Gaps = 36/561 (6%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           +I  C ++ +  +DY  K+   +   + F WN  IRG+ + G   EA+ LY  M    G 
Sbjct: 68  IITACCLAPT--MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNM-HGAGL 124

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD-LGLAC 134
            PDN+T+P + + CA L     G E+  +++K GFD D++V ++++ ++   G+ LG+  
Sbjct: 125 FPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMEL 184

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VF E  VRN+VSW ++I G+V++ + +E + +FR+M     +P+ VT++ ++ ACA LE
Sbjct: 185 -VFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLE 243

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            LNLG+ IH Y  + G+   V L NAL+ +Y KCG +E+                     
Sbjct: 244 FLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVET--------------------- 282

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                     AR +FD +  + +V WNA+I  Y Q      A+ LF  MQA  +  D +T
Sbjct: 283 ----------ARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYIT 332

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            V  +SAC+ LGAL+ G W+H  ++++   +NV +  AL+DMYAKCGNI  A +VF  +P
Sbjct: 333 MVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLP 392

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            R+ +++T++IG  A HG   DA+  FS M   G+ P+  TF  + +AC H GLV+EGRK
Sbjct: 393 CRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRK 452

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F  M   + + P ++H +CMVDLLGR+G L EA + I  MP+  DV VWGAL  +CR+H
Sbjct: 453 HFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIH 512

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            N+ + E  A KL  LDPQ    YVL++N+Y ++  WE+A ++RK+MEER ++K PG S 
Sbjct: 513 SNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSL 572

Query: 555 IEVNGLLYEFIVRDKSHPELE 575
           +EVN   + F+   +S   L 
Sbjct: 573 VEVNRRFHTFLSGSRSQSSLR 593


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/587 (36%), Positives = 349/587 (59%), Gaps = 36/587 (6%)

Query: 35  LFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK------- 87
           LF+   P++F ++ A+R     G       L  + +R  G RPD FT+  LFK       
Sbjct: 59  LFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSR 118

Query: 88  -----VCASLG---LR--------FLGYEIFGHVLKLGFDVD-------MYVHNAVIHVF 124
                +C  L    LR        F+   +    ++LG   D       ++V +AV    
Sbjct: 119 PHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTM 178

Query: 125 VSCG--DLGLACN---VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +  G   +G+ C+   +  ++ VR+++SW SLI  + R+   REA+  F+ M    + PD
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPD 238

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           EVT+I ++SACA+L+DL LGR +H  + E G+  +  L  AL+DMY KCG    A+++FD
Sbjct: 239 EVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFD 298

Query: 240 SM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           ++       S   +I GY K G +D+AR +FD++  + ++ +N+++ GY+ + + +EAL 
Sbjct: 299 ALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALL 358

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF  M+   ++ D  T V+ L+AC+ LGAL  G  +H  IE+     ++ LGTAL+DMY 
Sbjct: 359 LFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYM 418

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG + +A  VF  M +R+  T+TA+I GLA +G    A+ +F +M   G  P+ ++++ 
Sbjct: 419 KCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIA 478

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L+AC H  L++EGR YF +M  ++ + P+++HY CM+DLLGRSGLL+EA  L+++MP+ 
Sbjct: 479 VLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQ 538

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            + V+W ++  ACR+H ++ + + AA  LL+L+P + G+YV L N+Y DS  WE A K+R
Sbjct: 539 PNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIR 598

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            +MEER V+KT G SSI V G +++F+V DKSHP + +I   L +++
Sbjct: 599 MLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEIS 645



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 110/225 (48%), Gaps = 20/225 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    +   ++  +  ++N  + G++ +G++REA+ L+  M R+   R DNFT   L 
Sbjct: 321 HVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH-DLRVDNFTVVNLL 379

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASLG    G  +   + +   + D+Y+  A++ +++ CG +  A  VF     R++ 
Sbjct: 380 TACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVH 439

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR------ 200
           +W ++I G   +G  + A+  F  M+ +  +P+ V+ I +++AC+    LN GR      
Sbjct: 440 TWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEM 499

Query: 201 ----EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                IH  I   G          ++D+  + G L+ A ++  +M
Sbjct: 500 RILYNIHPQIEHYG---------CMIDLLGRSGLLDEAMDLVKTM 535


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 343/585 (58%), Gaps = 19/585 (3%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILF--NVQNPNSFSWNVAIRGFLETGKMREAV 63
           LI   F  SRLI F AI+  +NLD    +LF  +  +PN + +N  I     +  + ++ 
Sbjct: 59  LIGQTFPMSRLILFSAITHPENLDMAV-LLFRHHTPHPNLYIYNTMISAL--SLSLNQSF 115

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG--YEIFGHVLKLGFDVDMYVHNAVI 121
             Y  +L +    P+  T+  LF + AS   +FL    +I  H +  G     Y+ N ++
Sbjct: 116 AFYNSLL-SSCIYPNRSTF--LFLLQAS---KFLSQVMQIHCHAIITGSFYYGYLQNTLM 169

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            +++    +GLA  VF +    + VS+N +I G+ + G   EA++   +M    ++PDE 
Sbjct: 170 KIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEF 229

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGL--TLTVPLANALMDMYVKCGKLESAEEIFD 239
           TM+G++  C +L D  LG+ +H +I   GL  +  + L NAL+DMYVKC +L  A+ IF+
Sbjct: 230 TMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFN 289

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            +V K  +S  TMI GYAK G L+IA   F+D+P + +V WN+II GY Q         L
Sbjct: 290 VIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRL 349

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F  M A  I PD VT ++ +SA +++GAL  G WIH ++ +    ++  LG+A +DMY K
Sbjct: 350 FENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWK 409

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I +A  VF E+ E++   +T +I G A HG    A+  F EM    +MP+++TF+ +
Sbjct: 410 CGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAV 468

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H G V +G + F  M   + + P ++HY C+VDLLGRSG   E + +I  MPM  
Sbjct: 469 LTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKP 528

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              +WGA+  ACR +GN+ I E A  +LL+L+P+  G YVLL+N+Y  S  W+ + K+R+
Sbjct: 529 SRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIRE 588

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP---ELEQIYDCL 581
           +ME RGV+KT GCSS+ V+G+++EF+  DK HP   E++ I  CL
Sbjct: 589 IMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQSILFCL 633


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 328/546 (60%), Gaps = 1/546 (0%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S +I   A+S S +L+        +  P    +N  IRG  ++    EA+ +Y  ++ N 
Sbjct: 93  SNVIKSYALSRS-HLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQ 151

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G   DN T+  LFK C+ +     G      VLKLGF   +++ N++I ++   G+LG A
Sbjct: 152 GILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYA 211

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VFD+   R+LVSWNSLI G+ +    +E + LF  M+   V  D VTM+ ++ AC+ L
Sbjct: 212 QKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYL 271

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            +  +   +  YI +  + + V L N+L+DMY + G ++ A  +FD M  K +VS   M+
Sbjct: 272 CEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAML 331

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GYA  G L  A+K+F+++P + V+ W  +I G  QA +  +AL LF EM    +KPD +
Sbjct: 332 TGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEI 391

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    LSACS LG LD G  +H ++ + +   +V +G AL+DMY KCG + KAL+VFH+M
Sbjct: 392 TVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDM 451

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +++S+++T++I GLA++G   +    FS+M+  GL P   +F+GIL AC H GLVD+G 
Sbjct: 452 KKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGL 511

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M  ++ L P++KHY C+VDLL RSG L+ A + I+ MP+  DVV+W  L  AC+L
Sbjct: 512 EYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKL 571

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           H N+ + E A  KLLELDP +SG YVLL+N Y  S+ W++A ++R +M    V+K    S
Sbjct: 572 HRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWS 631

Query: 554 SIEVNG 559
           SIEV G
Sbjct: 632 SIEVIG 637


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 347/587 (59%), Gaps = 36/587 (6%)

Query: 35  LFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK------- 87
           LF+   P++F ++ A+R     G       L  + +R  G RPD FT+  LFK       
Sbjct: 59  LFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSR 118

Query: 88  -----VCASL-----------GLRFLGYEIFGHVLKLGFDVD-------MYVHNAVIHVF 124
                +C  L              F+   +    ++LG   D       ++V +AV    
Sbjct: 119 PHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTM 178

Query: 125 VSCG--DLGLACN---VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +  G   +G+ C+   +  ++ VR+++SW SLI  + R+   REA+  F+ M    + PD
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPD 238

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           EVT+I ++SACA+L+DL LGR +H  + E G+  +  L  AL+DMY KCG    A+++FD
Sbjct: 239 EVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFD 298

Query: 240 SM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           ++       S   +I GY K G +D+AR +FD++  + ++ +N+++ GY+ + + +EAL 
Sbjct: 299 ALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALL 358

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF  M+   ++ D  T V+ L+AC+ LGAL  G  +H  IE+     ++ LGTAL+DMY 
Sbjct: 359 LFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYM 418

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG + +A  VF  M +R+  T+TA+I GLA +G    A+ +F +M   G  P+ ++++ 
Sbjct: 419 KCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIA 478

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L+AC H  L++EGR YF +M  ++ + P+++HY CM+DLLGRSGLL+EA  L+++MP+ 
Sbjct: 479 VLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQ 538

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            + V+W ++  ACR+H ++ + + AA  LL+L+P + G+YV L N+Y DS  WE A K+R
Sbjct: 539 PNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIR 598

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            +MEER V+KT G SSI V G +++F+V DKSHP + +I   L +++
Sbjct: 599 MLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEIS 645



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 110/225 (48%), Gaps = 20/225 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    +   ++  +  ++N  + G++ +G++REA+ L+  M R+   R DNFT   L 
Sbjct: 321 HVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH-DLRVDNFTVVNLL 379

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASLG    G  +   + +   + D+Y+  A++ +++ CG +  A  VF     R++ 
Sbjct: 380 TACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVH 439

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR------ 200
           +W ++I G   +G  + A+  F  M+ +  +P+ V+ I +++AC+    LN GR      
Sbjct: 440 TWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEM 499

Query: 201 ----EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                IH  I   G          ++D+  + G L+ A ++  +M
Sbjct: 500 RILYNIHPQIEHYG---------CMIDLLGRSGLLDEAMDLVKTM 535


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/596 (36%), Positives = 343/596 (57%), Gaps = 66/596 (11%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++DY   +L    +P  FSWN  IR +   G  + ++ LY +MLR+  T+P NFT+P + 
Sbjct: 42  SIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSS-TKPSNFTFPFVL 100

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C++LG    G +I  HVL+LGF  D++V N++I ++  C  L  A N +D+   R+ V
Sbjct: 101 KACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEV 160

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLER------------------------------- 175
           SWNS+I+G+V+ G   +A  LF +M + R                               
Sbjct: 161 SWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVS 220

Query: 176 ---VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V+P+  TM+ ++SAC+ L +  +GR +  +I  + + L   L  AL+DMY KCG +E
Sbjct: 221 ADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVE 280

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A                                +IFD +  K +  WNAII G VQ   
Sbjct: 281 KA-------------------------------WRIFDGVSCKNLPSWNAIITGCVQGGL 309

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            +EA+ L+  M+A  +KP+ +T V+ LSAC+ LGAL+ G  +H ++ +   +LNV+L TA
Sbjct: 310 LEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATA 369

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           LVDMYAKCG I  A  +F +  E++   + A+I GLA HG   D+++ FS+M+  G+ P+
Sbjct: 370 LVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPN 429

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           ++TF+G+LSAC H GLV+EGR  F+ M+    LSPKL+HY+CMVDLLGR+G L+EA +L+
Sbjct: 430 DVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELV 489

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           ++M +  D ++WGAL  ACR+H N+ + ++ +  ++     + G  +LL+N+Y  S  W+
Sbjct: 490 QNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWK 549

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +  +VR+ ++E+ ++K  GCS +EV+G+++ F+V D +H +  +IY     L  H 
Sbjct: 550 DVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEILVNHL 605



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 161/333 (48%), Gaps = 27/333 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +++   +I   V   N  SWN  I G ++ G + EA+DLY+ M +    +P+  T 
Sbjct: 274 SKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHM-KAQSVKPNEITL 332

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA LG   LG E+  ++ + G D+++ +  A++ ++  CG +  AC +F ++  
Sbjct: 333 VNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSE 392

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR-E 201
           +++  WN++I G    G  R+++ +F  M    V+P++VT IG++SAC     +  GR +
Sbjct: 393 KDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQ 452

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
                 + GL+  +     ++D+  + G L+ A E+  +M    ++   ++I G A    
Sbjct: 453 FSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNM----LIPPDSIIWG-ALLSA 507

Query: 262 LDIAR--KIFDDLPEKYVVPWNAIIGG-------YVQAKRSKEALALFHEMQATGIKPDA 312
             I R  ++ D + E  +   +  IG        Y  + R K+   +  +++   IK   
Sbjct: 508 CRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKP- 566

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                  S CS +    DG+ +HRF+ ++  +L
Sbjct: 567 -------SGCSWVEV--DGV-VHRFVVEDTTHL 589


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/556 (38%), Positives = 323/556 (58%), Gaps = 40/556 (7%)

Query: 26  KNLDYCTKIL-FNVQNPNSFSWNVAIRGFLETGKMREAV-DLYKQMLRNGGTRPDNFTYP 83
           +NL Y + +  F  QNP  + +N  I+    +      +  LY+QML  G   PD +T P
Sbjct: 85  QNLWYASSLANFCHQNP-VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIG-LSPDTYTLP 142

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            L K C+         +I  H +K G   +++V N ++  +   G +     VFD+    
Sbjct: 143 YLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHW 202

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +L+SW +LI  + + G+P EAI  F  M       D +T++ ++SAC+QL D  LG++I 
Sbjct: 203 DLISWTTLIQAYSKMGYPSEAIAAFFRMN---CTADRMTLVVVLSACSQLGDFTLGKKIL 259

Query: 204 WYISESGLTL--TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
            Y+      +   V L NAL+DMY+KCG+                               
Sbjct: 260 AYMDHHLFDVHSDVFLGNALLDMYLKCGQPH----------------------------- 290

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
             +AR++F  +P K +V WN++I G       KEAL +F  MQ  G+KPD+VT V  L++
Sbjct: 291 --LARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNS 348

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ LG L+ G W+H +I+K +   +  +  ALVDMYAKCG+I +A  VF  M  ++  +Y
Sbjct: 349 CANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSY 408

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           TA+I G A+HGKA  A++ FSEM  +G+ PD +T +G+LSAC H GL++EGR++F  MS 
Sbjct: 409 TAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSR 468

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           ++ L P+ +HY CMVDLLGR+GL+ EAE     MP+  D  VWG+L  AC++H  V +GE
Sbjct: 469 LYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGE 528

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
               KL+E++P+  G Y+L++N+Y  +N W +A K RK M++  ++KTPGCSSIEV+G++
Sbjct: 529 TVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMV 588

Query: 562 YEFIVRDKSHPELEQI 577
           +EF   +KSHP+  ++
Sbjct: 589 HEFRKGEKSHPKSREM 604


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 322/523 (61%), Gaps = 23/523 (4%)

Query: 83  PL-LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS--CGDLGLACNVFDE 139
           PL LF+ C S+   +   +I    +K G   +  + N ++    S   GD+  A  +FD 
Sbjct: 17  PLSLFETCKSM---YHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDT 73

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
               ++ SWN +  G+ R   P+  + L+ +M    V+PD  T   +     +   L LG
Sbjct: 74  IPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLG 133

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD-----------------SMV 242
           RE+H ++ + GL   V   NAL++MY  CG ++ A  IFD                 + +
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI 193

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K V+S T ++ G+   G +D ARK F  +PE+  V W A+I GY++    KEAL LF E
Sbjct: 194 KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFRE 253

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQ + IKPD  T V  L+AC+QLGAL+ G WI  +I+K     +  +G AL+DMY KCGN
Sbjct: 254 MQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGN 313

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  AL +F+ +P+R+  T+TA++ GLA++G   +A++ FS+M+   + PDE+T++G+LSA
Sbjct: 314 VEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSA 373

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H G+VDEG+K+FA M++   + P + HY CMVDLLG++G L+EA ++I++MPM  + +
Sbjct: 374 CTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSI 433

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           VWGAL  ACR+H +  + ERA  ++LEL+P +  +YVL  N+Y   N W++  ++R++M 
Sbjct: 434 VWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMM 493

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           +RG++KTPGCS IE+NG+++EF+  D+SHP+ ++IY  L ++T
Sbjct: 494 DRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMT 536



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 215/442 (48%), Gaps = 84/442 (19%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG+I +    +++++FC   E  ++ Y  ++   +  P+ FSWN+  +G+      +  V
Sbjct: 40  TGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGV 99

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            LY +ML     +PD +TYP LFK    S+ L+ LG E+  HV+K G D +++ HNA+I+
Sbjct: 100 SLYLEMLER-NVKPDCYTYPFLFKGFTRSVALQ-LGRELHCHVVKYGLDSNVFAHNALIN 157

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR------------SGFP--------- 161
           ++  CG + +A  +FD SC  ++V+WN++I+G+ R            +GF          
Sbjct: 158 MYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAAR 217

Query: 162 ---------------------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
                                      +EA+ LFR+MQ  +++PDE TM+ +++ACAQL 
Sbjct: 218 KYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLG 277

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L LG  I  YI ++ +     + NAL+DMY KCG +E A  IF+++  +   + T M+V
Sbjct: 278 ALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVV 337

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G A  G                                 +EAL +F +M    + PD VT
Sbjct: 338 GLAINGC-------------------------------GEEALNMFSQMLKASVTPDEVT 366

Query: 315 TVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
            V  LSAC+  G +D+G  +      +     N+     +VD+  K G++ +A ++   M
Sbjct: 367 YVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNM 426

Query: 374 PER-NSLTYTAIIGGLALHGKA 394
           P + NS+ + A++G   +H  A
Sbjct: 427 PMKPNSIVWGALLGACRIHKDA 448


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 319/514 (62%), Gaps = 3/514 (0%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           N+ IR     G     + +Y   LR  G   D+FTYP + +    L L   G +     +
Sbjct: 15  NLLIRTLARRGSFARVMAVYYD-LRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAM 73

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           K GF  D Y  ++++ ++   G   +A  +FDE   R LV WN +I  +VR G    AI 
Sbjct: 74  KTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIA 133

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L  +M+   + PD+VT++  V+ C++  DL+LGR IH Y+ +     ++P+ANAL+DMY+
Sbjct: 134 LAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYM-DGVFGFSLPVANALLDMYM 192

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K G LE A ++F+ M ++ ++S T ++ GYA  G LD AR +F    EK ++ W A+I  
Sbjct: 193 KNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINA 252

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            VQ    +EAL+LF EMQ   ++PD  T V  L+ C+ LGALD G WIH+F       ++
Sbjct: 253 CVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVD 312

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            VLGTAL+DMYAKCG++ K+++VF +M  R++  +T+II GLA +G+A  A+  F +M  
Sbjct: 313 AVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMER 372

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             + PD ITF+G+LSACCHGGLVDEGRK F  M  ++R+ P+++HYSC+V+LLGR+GLL+
Sbjct: 373 SKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGLLD 432

Query: 467 EAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           EAE+LIR + +  D + ++GAL  AC+  GNV + ER   ++ E   Q   + +L++N+Y
Sbjct: 433 EAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVNLLMSNVY 492

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
             ++ WE+A +VR  M    ++KT GCS IEV G
Sbjct: 493 ATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKG 526



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 64/317 (20%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN+ IR ++  G+   A+ L ++M R+G T PD  T      VC+  G   LG  I  ++
Sbjct: 115 WNMMIRCYVRCGRYTAAIALAEEMERSGLT-PDKVTLVTSVTVCSRAGDLSLGRRIHAYM 173

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF---------- 155
             + F   + V NA++ +++  G L  A  +F++   RN++SW  L++G+          
Sbjct: 174 DGV-FGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKAR 232

Query: 156 ---------------------VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
                                V+ G   EA+ LFR+MQ++RVEPD  T++ +++ CA L 
Sbjct: 233 VLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLG 292

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L+ G  IH +  +  + +   L  AL+DMY KCG ++ + E+F+ M  +   + T++I 
Sbjct: 293 ALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIIC 352

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G A  G                            QA R   AL LF +M+ + +KPD++T
Sbjct: 353 GLATNG----------------------------QAGR---ALELFEDMERSKVKPDSIT 381

Query: 315 TVHCLSACSQLGALDDG 331
            +  LSAC   G +D+G
Sbjct: 382 FIGVLSACCHGGLVDEG 398


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/543 (41%), Positives = 327/543 (60%), Gaps = 7/543 (1%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F WN  I+ +      +EA+ L   ML NG    D FT  L+ K C+ +GL   G +I G
Sbjct: 93  FLWNAIIKTYSHGHDPKEAMWLVSLMLENGAF-ADKFTLSLVLKACSRVGLVKEGMQIHG 151

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
            + KL F  D+++ N +I  +V CG L  A  VFD    R+ VS+NS+I+G+V+ G    
Sbjct: 152 LLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDL 211

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A  +F  + LE  E + ++   ++   AQ ED   G  + W +        +   N+++D
Sbjct: 212 ARVVFDCIPLE--ERNLISWNSLIRGYAQSED---GILVAWQLFAKMPERDLISWNSMID 266

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
             VKCG++E A+ +FD M N+ +VS   MI GYAK G +DIAR +FD++PE+ VV +NA+
Sbjct: 267 GCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAM 326

Query: 284 IGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +GGYVQ     EAL +F+ MQ+ G    D  T +  LSA +QLG +D G+ IHRFIE+  
Sbjct: 327 MGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIG 386

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
           F+L+  LG AL+DMY+KCG+I  A+ VF  + E++   + AIIGGLA+HG    A  +  
Sbjct: 387 FSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLM 446

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM  + + PD+ITF+G+L+AC H GLV EG   F  M  + ++ PKL+HY CMVD+LGR+
Sbjct: 447 EMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRA 506

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G +EEA+  +  MP   + V+W +L  AC+ H + ++G+  A  L+ LD      YVL +
Sbjct: 507 GHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLAS 566

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           NMY     W +  KVR MM+++ ++K PGCS IE+ G +Y F V+DKSHP+   IY  L 
Sbjct: 567 NMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVYAFFVQDKSHPQFSGIYSILD 626

Query: 583 QLT 585
            L+
Sbjct: 627 SLS 629


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/550 (39%), Positives = 324/550 (58%), Gaps = 8/550 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I GF +  +  EA+D + +M R+     D +++      C+ L    LG +I G 
Sbjct: 123 SWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLND-YSFGSGLSACSRLKDLKLGAQIHGL 181

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           + K  + +D+++ + +I  +  CG +G A  VFD    +N+VSWN LI  + ++G   EA
Sbjct: 182 ISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEA 241

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMD 223
           +  F  M     +PDEVT+  +VSACA L     G +IH  + +S      + L NAL+D
Sbjct: 242 LEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVD 301

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY KCG++  A  +FD M  +  VS TTM+ GYAK   +  AR +F  + +K +V WNA+
Sbjct: 302 MYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNAL 361

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I GY Q   ++EAL LF  ++   + P   T  + L+A + L  L+ G   H  + K  F
Sbjct: 362 IAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGF 421

Query: 344 NL------NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
                   ++ +G +L+DMY KCG++ + L+VF  M E++ +++  +I G A +G  ++A
Sbjct: 422 RFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEA 481

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F +M+  G  PD +T +G L AC H GLV+EGR+YF  M+    L P   HY+CMVD
Sbjct: 482 LELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVD 541

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G LEEA+ LI SMP   D VVW +L  AC++H N+++G+  A K+ E+DP  SG 
Sbjct: 542 LLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGP 601

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLLANMY +   W +A  VRK+M  RGV K PGCS I++   ++ F+V+DK HP+ ++I
Sbjct: 602 YVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEI 661

Query: 578 YDCLVQLTRH 587
           Y  L  LT+H
Sbjct: 662 YSILKLLTKH 671



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 205/478 (42%), Gaps = 100/478 (20%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D+  +  L  +C  L        + G +++  F  ++++ N +I V+  CG L  A  VF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 138 DESCVRNL-------------------------------VSWNSLINGFVRSGFPREAIR 166
           D    RN+                                SWNS+I GF +     EA+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
            F  M  +    ++ +    +SAC++L+DL LG +IH  IS+S  +L V + + L+D Y 
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KCG +  A  +FD M  K VVS                               WN +I  
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVS-------------------------------WNCLITC 231

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNL 345
           Y Q   + EAL  F  M   G KPD VT    +SAC+ L A  +G+ IH R ++ + F  
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT----------------------- 382
           +++LG ALVDMYAKCG + +A  VF  MP RN+++ T                       
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 383 --------AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
                   A+I G   +G+  +A+  F  +    + P   TF  +L+A  +   ++ GR+
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 435 YFAQ-MSSIFRLS----PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             +  +   FR      P +   + ++D+  + G +EE  ++  +M +  D V W  +
Sbjct: 412 AHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENM-VEKDHVSWNTM 468


>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
 gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
          Length = 529

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/514 (40%), Positives = 316/514 (61%), Gaps = 4/514 (0%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           NV IR     G     + +Y   LR  G   D++TYP + +    + L   G ++    +
Sbjct: 15  NVLIRTLARRGSFARVMAVYYD-LRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAV 73

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           K GF  D Y  ++++ ++   G +  A  VFDE   R LV WN ++  ++R G    A+ 
Sbjct: 74  KTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVA 133

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L  +M+     PD VT++  V+AC++  DL+LGR I  Y+ +     ++P+ANAL+DMY 
Sbjct: 134 LAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYM-DGVFGFSLPVANALLDMYT 192

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K G LE A ++F  M  + ++S T ++ GYA  G LD AR +F    +K ++ W A+I  
Sbjct: 193 KNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINA 252

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            VQ    +EAL LF +MQ   ++PD  T V  L+ C+ +GALD G WIH++ E  N  ++
Sbjct: 253 CVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKID 312

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            VLGTAL++MY+KCG++ K+LQ+F  M  R++  +TAII GLA +G+A  A+  F EM  
Sbjct: 313 AVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQR 372

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
               PD ITF+G+L+ACCHGGLVDEGR++F  M  I+++ P+++HYSC+V+LLG +GLL 
Sbjct: 373 SKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLLY 432

Query: 467 EAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELD-PQDSGIYVLLANM 524
           EAE+LIR MP+  D + ++GAL  AC+ +GNV + ER   ++ + D  Q+  + VL++N+
Sbjct: 433 EAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQNPDVNVLMSNV 492

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           Y  ++ WEE+ +VR  M    V+KT GCS IEV 
Sbjct: 493 YATASRWEESIRVRSKMTHPAVKKTAGCSMIEVK 526



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 172/383 (44%), Gaps = 65/383 (16%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D+  K+   +       WN+ +R ++  G+   AV L ++M R+G T PD  T     
Sbjct: 96  RVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSGAT-PDRVTLVTAV 154

Query: 87  KVCA-----SLGLRFLGY--EIFGHVLKLGFD-VDMYVHNA------------------- 119
             C+     SLG R   Y   +FG  L +    +DMY  N                    
Sbjct: 155 TACSRAGDLSLGRRIRAYMDGVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIIS 214

Query: 120 ---VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
              ++  +   G L  A  +F +   ++L+ W ++IN  V+ G   EA+ LFRDMQL+RV
Sbjct: 215 WTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRV 274

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EPD+ T++ +++ CA +  L+ G  IH Y     + +   L  AL++MY KCG ++ + +
Sbjct: 275 EPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQ 334

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           IF  M  +   + T +I G A  G                               ++ +A
Sbjct: 335 IFGRMQGRDAAAWTAIICGLATNG-------------------------------QASKA 363

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TALV 354
           L LF EMQ +  KPD +T +  L+AC   G +D+G   H    KE + +   +   + LV
Sbjct: 364 LELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEG-RRHFQAMKEIYQIEPRIEHYSCLV 422

Query: 355 DMYAKCGNIAKALQVFHEMPERN 377
           ++    G + +A ++  +MP  N
Sbjct: 423 NLLGHAGLLYEAEKLIRDMPVNN 445


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/626 (36%), Positives = 357/626 (57%), Gaps = 41/626 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCA--ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           +T +G I+H  +   L+      +S  ++L Y   +   + +P +F  + A+R  L+   
Sbjct: 22  LTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTFLHDTALRACLQASA 81

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS---LGL-RFLGYEIFGHVLKLGFDVDM 114
             +   L  + +R GG R   FT+  +F+ CA+    GL R L       +L     +  
Sbjct: 82  GADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARI-- 139

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCV-------------------------------R 143
            V N +IH++ S G    A   FDE  V                               R
Sbjct: 140 -VANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 198

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           N+VSW SLI G+ R+G P +A+  F  M  + VEPDEV +IG +SAC++L++L  GR +H
Sbjct: 199 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLH 258

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFL 262
             + +  + +T  L   L+DMY KCG +  A+ +FD++   +       +I GY K G +
Sbjct: 259 LLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHV 318

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           DIAR +FD +  + V+ +N++I GY+ + R ++AL LF +++  G++ D  T V  L+AC
Sbjct: 319 DIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTAC 378

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + LGAL  G  +H  IE+     +V L TALVDMY KCG + +A  VFH M ER+  T++
Sbjct: 379 ASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWS 438

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I GLA +G  +DA+  F +M   G  P  +T++ +L+AC H  L++EGR++F +M S+
Sbjct: 439 AMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSL 498

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
            +L P+++HY CM+DLL RSGLL+EA  L+++MPM  + V+W ++  ACR+H N+ +   
Sbjct: 499 HKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARH 558

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  LL+L P++  +YV L N+Y DS  W EA ++R +MEE+GV+KT G SSI V G ++
Sbjct: 559 AAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVH 618

Query: 563 EFIVRDKSHPELEQIYDCLVQLTRHF 588
           +F+V D+SHP   +I   + ++ R  
Sbjct: 619 KFVVNDQSHPWTLEIITMMEEIARRL 644


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 345/604 (57%), Gaps = 43/604 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRG-FLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           S+  +L Y    LF+    ++F ++ A+R  F  +      + LY++M       PD FT
Sbjct: 48  SDPLHLRYALS-LFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRM-HGVDVPPDAFT 105

Query: 82  YPLLFKVCASLGL-----RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           +  LFK CA  G      R L    F  +L     +   + + +IH++   G  G A   
Sbjct: 106 FHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPL---IASPIIHMYAELGLPGDARRA 162

Query: 137 FDESCV-------------------------------RNLVSWNSLINGFVRSGFPREAI 165
           FDE+ V                               RN+V+W  LI+G+ R+G   EA+
Sbjct: 163 FDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAV 222

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
             F  M  + + PDEVT+IGM+SAC QL+DLN G  +H  + +  + ++  L  AL+DMY
Sbjct: 223 DCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMY 282

Query: 226 VKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
            KCG    A E+FD++   +       MI GY K G +DIAR +FD + +  V+ +N++I
Sbjct: 283 AKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLI 342

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY+   R +EAL LF +M+  G+  D  T V  L+A + LGAL  G  +H  IE+    
Sbjct: 343 TGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVE 402

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            +V LGTAL+DMY KCG + +A+  F +M  R+  T++A+IGGLA +G    A+ +F  M
Sbjct: 403 RDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWM 462

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G   + +T++ +L+AC H  L+DEGR YF +M  +  + P+++HY CM+DLLGRSGL
Sbjct: 463 KCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGL 522

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L+EA  L+++MPM  + V+W ++  ACR+H NV + + AA  LL+L+P +  +YV + N+
Sbjct: 523 LDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNI 582

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           Y DS  WE+A K+R++ME+RGV+KT G SSI V G +++FIV D+SHP++ +I   + ++
Sbjct: 583 YIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEI 642

Query: 585 TRHF 588
            R  
Sbjct: 643 GRRL 646


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 346/590 (58%), Gaps = 15/590 (2%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGK 58
           M    L+   F  SRL+ F A+S  +NL+    +LFN     PN + +N  I GF  + +
Sbjct: 54  MMRNNLVGQTFPMSRLLFFSAVSHPENLELAI-LLFNHFTPYPNLYIFNTMILGFPFSNE 112

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG--YEIFGHVLKLGF-DVDMY 115
             +A  +Y+ ML+NG T PD  T+  L +       +F+    +I  H L  G    + Y
Sbjct: 113 --KAFTIYRSMLQNG-TYPDRQTFLYLLQTT-----KFVAEVKQIHCHALVFGLLSKEEY 164

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           + N++I  +V  G    A  +FDE   RN+VS+N++I GF + G     + LF DM+   
Sbjct: 165 LRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHG 224

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           +EPD+ TM+G++  C QL +  LG+ +H  I +S  +  + L NAL+DMYVKC +L+ A 
Sbjct: 225 LEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLAR 284

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++FD  + K  VS  T+I GYAK G L++A  +F+ +P + +V WN++I GY Q      
Sbjct: 285 KVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVT 344

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
              LF  M A  +KPD VT V+ +SA +++GALD G WIH    K    +    G+AL+D
Sbjct: 345 VKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALID 404

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY KCG+I +A  +F+++PE++  T+T +I G A HG    A+  FS M      P+++T
Sbjct: 405 MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVT 463

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+ +L+AC H GLVDEG K F+ M   + + P ++HY C+VDLL RSG L +A  +I  M
Sbjct: 464 FVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKM 523

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM     +WGA+  ACR+H N+ + ERA M+LL+L+P+  G Y+LL+N+Y     W  + 
Sbjct: 524 PMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSD 583

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            +R++M  RGV+K  GCSS+ V+G++++F   +K HP    I   L  LT
Sbjct: 584 SIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLT 633


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/591 (36%), Positives = 339/591 (57%), Gaps = 18/591 (3%)

Query: 1   MTITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           + + G+    F  SRL+  +C   ++  ++   ++   +   N FSW   +  +   G  
Sbjct: 36  LVVNGVDVCEFLGSRLLEVYC---QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDY 92

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            E + L+  M+ N G RPD+F +P +FK C+ L    +G +++ ++L +GF+ +  V  +
Sbjct: 93  EETIKLFYLMV-NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGS 151

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ +F+ CG + +A   F+E   +++  WN +++G+   G  ++A+ +FR M LE V+P+
Sbjct: 152 ILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPN 211

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWY-ISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
            +T+   VSAC  L  L  GREIH Y I    L   + + N+L+D Y KC  +E A   F
Sbjct: 212 SITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF 271

Query: 239 DSMVNKTVVSCTTM--IVGYAKFG----------FLDIARKIFDDLPEKYVVPWNAIIGG 286
             +    +VS   M  + G+ ++G           + IA  +F +L  + VV WN+II  
Sbjct: 272 GMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISA 331

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
             Q+ RS  AL L  EM  + ++ + VT V  L ACS+L AL  G  IH+FI +   +  
Sbjct: 332 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTC 391

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
             +  +L+DMY +CG+I K+ ++F  MP+R+ +++  +I    +HG  +DA++ F +   
Sbjct: 392 NFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRT 451

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
           +GL P+ ITF  +LSAC H GL++EG KYF  M + + + P ++ Y+CMVDLL R+G   
Sbjct: 452 MGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFN 511

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526
           E  + I  MP   +  VWG+L  ACR+H N  + E AA  L EL+PQ SG YVL+AN+Y 
Sbjct: 512 ETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYS 571

Query: 527 DSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
            +  WE+A K+R +M+ERGV K PGCS IEV   L+ F+V D SHP +EQI
Sbjct: 572 AAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 622



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 222/518 (42%), Gaps = 86/518 (16%)

Query: 75  TRPDNFT--YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           T PD     Y  + + C  L    LG+++   ++  G DV  ++ + ++ V+   G +  
Sbjct: 4   TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 63

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FD+   RN+ SW +++  +   G   E I+LF  M  E V PD      +  AC++
Sbjct: 64  ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 123

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L++  +G++++ Y+   G      +  +++DM++KCG+++ A   F+ +  K V     M
Sbjct: 124 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 183

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GY   G                                 K+AL +F +M   G+KP++
Sbjct: 184 VSGYTSKG-------------------------------EFKKALNVFRKMVLEGVKPNS 212

Query: 313 VTTVHCLSACSQLGALDDGIWIHRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQ--- 368
           +T    +SAC+ L  L  G  IH + I+ E  + ++++G +LVD YAKC ++  A +   
Sbjct: 213 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 272

Query: 369 ----------------------------------------VFHEMPERNSLTYTAIIGGL 388
                                                   VF E+  R+ + + +II   
Sbjct: 273 MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISAC 332

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A  G++++A+    EM    +  + +T +  L AC     + +G++       I R    
Sbjct: 333 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH---QFIIRCGLD 389

Query: 449 LKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH--GNVSIGERAA 504
             ++  + ++D+ GR G ++++ ++   MP   D+V W  +     +H  G  ++     
Sbjct: 390 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQ-RDLVSWNVMISVYGMHGFGMDAVNLFQQ 448

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
            + + L P       LL+     S + EE  K  KMM+
Sbjct: 449 FRTMGLKPNHITFTNLLSAC-SHSGLIEEGWKYFKMMK 485


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 330/588 (56%), Gaps = 36/588 (6%)

Query: 5   GLISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
            ++  G  P+R +    +S   +  +L    ++  ++++ N  SW   I  F+   K  E
Sbjct: 72  AILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLE 131

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A   Y+ M +  G +PD  T+  L     +  L  LG ++   +++ G +++  V  +++
Sbjct: 132 AFKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLV 190

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CGD+  A  +FD    +N+V+W  LI G+ + G    A+ L   MQ   V P+++
Sbjct: 191 GMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKI 250

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++  C     L  G+++H YI +SG    + + N+L+ MY KCG LE         
Sbjct: 251 TFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEE-------- 302

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                  ARK+F DLP + VV W A++ GY Q     EA+ LF 
Sbjct: 303 -----------------------ARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFR 339

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
            MQ  GIKPD +T    L++CS    L +G  IH+ +    +NL+V L +ALV MYAKCG
Sbjct: 340 RMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCG 399

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGL-ALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           ++  A  VF++M ERN + +TAII G  A HG+  +A+ YF +M   G+ PD++TF  +L
Sbjct: 400 SMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVL 459

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC H GLV+EGRK+F  M   + + P ++HYSC VDLLGR+G LEEAE +I SMP    
Sbjct: 460 SACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPG 519

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             VWGAL  ACR+H +V  GERAA  +L+LDP D G YV L+++Y  +  +E+A KVR++
Sbjct: 520 PSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQV 579

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           ME+R V K PG S IEV+G ++ F V DKSHPE EQIY  L +LT   
Sbjct: 580 MEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQI 627



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 222/438 (50%), Gaps = 36/438 (8%)

Query: 55  ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
           +TG+++EA+ +   M+  G TR  +  +  L + CA L     G E+   +LK G   + 
Sbjct: 24  KTGRLKEALGIMNTMILQG-TRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNR 82

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           Y+ N ++ ++  CG L  A  VFD    RN+VSW ++I  FV      EA + +  M+L 
Sbjct: 83  YLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLA 142

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             +PD+VT + +++A    E L LG+++H  I E+GL L   +  +L+ MY KCG +  A
Sbjct: 143 GCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKA 202

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
             IFD +  K VV+ T +I GYA+ G +D+                              
Sbjct: 203 RVIFDRLPEKNVVTWTLLIAGYAQQGQVDV------------------------------ 232

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
            AL L   MQ   + P+ +T    L  C+   AL+ G  +HR+I +  +   + +  +L+
Sbjct: 233 -ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
            MY KCG + +A ++F ++P R+ +T+TA++ G A  G   +AI+ F  M   G+ PD++
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351

Query: 415 TFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           TF  +L++C     + EG++   Q+  + + L   L+  S +V +  + G +++A  +  
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFN 409

Query: 474 SMPMAADVVVWGALFFAC 491
            M    +VV W A+   C
Sbjct: 410 QMS-ERNVVAWTAIITGC 426


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/548 (36%), Positives = 324/548 (59%), Gaps = 26/548 (4%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S+LI FC  SE  +++Y   +L  + NP+ + WN  IRGF+ +   R ++ LY+QM+ NG
Sbjct: 40  SKLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENG 99

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
            + PD+FT+P + K C  +  +  G  I   ++K GF+ D Y    ++H++VSC D+   
Sbjct: 100 YS-PDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSG 158

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VFD     N+V+W  LI G+V++  P EA+++F DM    VEP+E+TM+  + ACA  
Sbjct: 159 LKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHS 218

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            D++ GR +H  I ++G                         + F S  N  ++  T ++
Sbjct: 219 RDIDTGRWVHQRIRKAGY------------------------DPFMSTSNSNIILATAIL 254

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
             YAK G L IAR +F+ +P++ +V WN++I  Y Q +R +EAL LF +M  +G+ PD  
Sbjct: 255 EMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKA 314

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T +  LS C+   AL  G  +H ++ K     ++ L TAL+DMYAK G +  A ++F  +
Sbjct: 315 TFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSL 374

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGILSACCHGGLVDEG 432
            +++ + +T++I GLA+HG   +A+S F  M     L+PD IT++G+L AC H GLV+E 
Sbjct: 375 QKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEA 434

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           +K+F  M+ ++ + P  +HY CMVDLL R+G   EAE+L+ +M +  ++ +WGAL   C+
Sbjct: 435 KKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQ 494

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           +H NV +  +  ++L EL+P  SG+++LL+N+Y  +  WEE    RK+M+ + + KT G 
Sbjct: 495 IHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKRITKTIGH 554

Query: 553 SSIEVNGL 560
           SS+E+  L
Sbjct: 555 SSVEMKLL 562


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 323/593 (54%), Gaps = 40/593 (6%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           T +L  V  PN FS++  I  F +  +   A+  + QML  G   PDN   P   K CA 
Sbjct: 68  TLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRG-LMPDNRVLPSAVKACAG 126

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD------------- 138
           L       ++ G     GFD D +V ++++H+++ C  +  A  VFD             
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSAL 186

Query: 139 ------ESCVR----------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                 + CV                 NL+SWN +I GF  SG   EA+ +F DM L   
Sbjct: 187 VAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGF 246

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EPD  T+  ++ A   LEDL +G  IH Y+ + GL     +++AL+DMY KC       +
Sbjct: 247 EPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQ 306

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK----YVVPWNAIIGGYVQAKR 292
           +FD M +  V SC   I G ++ G ++ + ++F  L ++     VV W ++I    Q  R
Sbjct: 307 VFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGR 366

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             EAL LF EMQ  G+KP++VT    L AC  + AL  G   H F  +   + +V +G+A
Sbjct: 367 DMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSA 426

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMYAKCG I  +   F  +P +N + + A+I G A+HGKA +A+  F  M   G  PD
Sbjct: 427 LIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPD 486

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            I+F  +LSAC   GL +EG  YF  MSS + +  +++HY+CMV LL R+G LE+A  +I
Sbjct: 487 IISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMI 546

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           R MP+  D  VWGAL  +CR+H NVS+GE AA KL EL+P + G Y+LL+N+Y    MW 
Sbjct: 547 RRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWN 606

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           E  +VR MM+ +G+ K PGCS IEV   ++  +  DKSHP++ QI + L +L+
Sbjct: 607 EVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLS 659



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 31/244 (12%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L+  R+ H +I ++GL     LA  L+  Y        A  + D +    V S +T+I  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           ++KF                                +   AL+ F +M   G+ PD    
Sbjct: 89  FSKF-------------------------------HQFHHALSTFSQMLTRGLMPDNRVL 117

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              + AC+ L AL     +H       F+ +  + ++LV MY KC  I  A +VF  M E
Sbjct: 118 PSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFE 177

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            + ++++A++   A  G   +A   FSEM   G+ P+ I++ G+++   H GL  E    
Sbjct: 178 PDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLM 237

Query: 436 FAQM 439
           F  M
Sbjct: 238 FLDM 241



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 12/210 (5%)

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
           S +ALAL   +Q T         ++CL+  S   +L      H  I K     +  L T 
Sbjct: 4   SAQALALLDSVQHT--------ILNCLN--STTASLSQTRQAHAHILKTGLFNDTHLATK 53

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+  YA     A A  V   +PE N  +++ +I   +   +   A+S FS+M+  GLMPD
Sbjct: 54  LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
                  + AC     +   R+    ++S+          S +V +  +   + +A ++ 
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVF 172

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGER 502
             M    DVV W AL  A    G V   +R
Sbjct: 173 DRM-FEPDVVSWSALVAAYARQGCVDEAKR 201


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 330/567 (58%), Gaps = 8/567 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD    +  ++  P+  SWN  + GF +  +  EA+  +  M  +     + +++     
Sbjct: 101 LDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDM-HSEDFVLNEYSFGSALS 159

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA L    +G +I   + K  + +D+Y+ +A++ ++  CG +  A   FD   VRN+VS
Sbjct: 160 ACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVS 219

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH-WYI 206
           WNSLI  + ++G   +A+ +F  M    VEPDE+T+  +VSACA    +  G +IH   +
Sbjct: 220 WNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVV 279

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
                   + L NAL+DMY KC ++  A  +FD M  + VVS T+M+ GYA+   +  AR
Sbjct: 280 KRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAAR 339

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +F ++ EK VV WNA+I GY Q   ++EA+ LF  ++   I P   T  + L+AC+ L 
Sbjct: 340 LMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLA 399

Query: 327 ALDDGIWIHRFIEKENF------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
            L  G   H  I K  F        ++ +G +L+DMY KCG +     VF  M ER+ ++
Sbjct: 400 DLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVS 459

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + A+I G A +G   +A+  F +M+  G  PD +T +G+LSAC H GLV+EGR+YF  M 
Sbjct: 460 WNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMR 519

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           +   L+P   H++CMVDLLGR+G L+EA  LI++MPM  D VVWG+L  AC++HGN+ +G
Sbjct: 520 TELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELG 579

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           +  A KL+E+DP +SG YVLL+NMY +   W++  +VRK M +RGV K PGCS IE+   
Sbjct: 580 KYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSR 639

Query: 561 LYEFIVRDKSHPELEQIYDCLVQLTRH 587
           ++ F+V+DK HP  + I+  L  LT  
Sbjct: 640 VHVFMVKDKRHPLKKDIHLVLKFLTEQ 666



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 195/412 (47%), Gaps = 69/412 (16%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           + + +NAV+ V    G L  A NVF      +  SWN++++GF +     EA+R F DM 
Sbjct: 84  NTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMH 143

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            E    +E +    +SACA L DLN+G +IH  IS+S   L V + +AL+DMY KCG + 
Sbjct: 144 SEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVA 203

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A+  FD M  + +VS                               WN++I  Y Q   
Sbjct: 204 CAQRAFDGMAVRNIVS-------------------------------WNSLITCYEQNGP 232

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGT 351
           + +AL +F  M   G++PD +T    +SAC+   A+ +G+ IH R ++++ +  ++VLG 
Sbjct: 233 AGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGN 292

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-------------------------------ERNSLT 380
           ALVDMYAKC  + +A  VF  MP                               E+N ++
Sbjct: 293 ALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVS 352

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + A+I G   +G+  +A+  F  +    + P   TF  +L+AC +   +  GR+   Q+ 
Sbjct: 353 WNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQIL 412

Query: 441 S---IFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
                F+   +   +  + ++D+  + G++E+   +   M +  DVV W A+
Sbjct: 413 KHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNAM 463



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 152/299 (50%)

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D      ++ +C + +     R IH  I ++  +  + + N L+D Y KCG  E A ++F
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M  +   S   ++    KFG LD A  +F  +PE     WNA++ G+ Q  R +EAL 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
            F +M +     +  +    LSAC+ L  L+ GI IH  I K  + L+V +G+ALVDMY+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +A A + F  M  RN +++ ++I     +G A  A+  F  M+  G+ PDEIT   
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           ++SAC     + EG +  A++    +    L   + +VD+  +   + EA  +   MP+
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 20  CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN 79
           C  + + ++     +  N+   N  SWN  I G+ + G+  EAV L+  +L+     P +
Sbjct: 327 CGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLF-LLLKRESIWPTH 385

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGF------DVDMYVHNAVIHVFVSCGDLGLA 133
           +T+  L   CA+L    LG +    +LK GF      + D++V N++I +++ CG +   
Sbjct: 386 YTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDG 445

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           C VF+    R++VSWN++I G+ ++G+   A+ +FR M +   +PD VTMIG++SAC+  
Sbjct: 446 CLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHA 505

Query: 194 EDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTT 251
             +  GR   H   +E GL         ++D+  + G L+ A ++  +M +    V   +
Sbjct: 506 GLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGS 565

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNA-----IIGGYVQAKRSKEALALFHEMQAT 306
           ++      G +++ + + + L E  + P N+     +   Y +  R K+ + +  +M+  
Sbjct: 566 LLAACKVHGNIELGKYVAEKLME--IDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQR 623

Query: 307 GI 308
           G+
Sbjct: 624 GV 625


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/598 (37%), Positives = 339/598 (56%), Gaps = 37/598 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM----------LRNGGTRP 77
           L+   K+  ++Q  N+FSWN  +    + G + EA++L+K M          + +G  + 
Sbjct: 70  LEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQR 129

Query: 78  DNFTYPLLFKV--------------------CASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
           D F   L F V                    CA L    +G +I G + K  + +D+Y+ 
Sbjct: 130 DRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMG 189

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           +A++ ++  C  +  A   FD+  VRN+VSWNSLI  + ++G   +A+ +F  M    +E
Sbjct: 190 SALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIE 249

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEE 236
           PDE+T+  + SACA L  +  G +IH  +         + L NAL+DMY KC ++  A  
Sbjct: 250 PDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARL 309

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD M  + VVS T+M+ GYAK   +  AR +F ++ E+ VV WNA+I GY Q   ++EA
Sbjct: 310 VFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEA 369

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF------NLNVVLG 350
           + LF  ++   I P   T  + L+AC+ L  L  G   H  I K  F      + ++ +G
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVG 429

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            +L+DMY KCG +     VF  M ER+++++ A+I G A +G   +A+  F EM+  G  
Sbjct: 430 NSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGER 489

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           PD +T +G+LSAC H GLV+EGR YF  M+    L P   HY+CMVDLLGR+G L+EA  
Sbjct: 490 PDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANN 549

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           LI++MPM  D VVWG+L  AC++HGN+++G+  A +LLE+DP +SG YVLL+NMY +   
Sbjct: 550 LIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGR 609

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           W++  +VRK M + GV K PGCS I +   L+ F+V+DK HP  + IY  L  LT   
Sbjct: 610 WKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQM 667



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 206/479 (43%), Gaps = 100/479 (20%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D+  +  L   C      F    +   ++K  F  ++++ N ++ V+  CG L  A  VF
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFR---------------------------- 169
           D    RN  SWN+++    + G   EA+ LF+                            
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 170 ---DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
              DM  E    +E +    +SACA L DL++G +IH  I++S  +L V + +AL+DMY 
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KC  + SA+  FD M  + +VS                               WN++I  
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVS-------------------------------WNSLITC 226

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNL 345
           Y Q   + +AL +F  M   GI+PD +T     SAC+ L A+ +G+ IH R ++ + +  
Sbjct: 227 YEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMP------------------------------- 374
           ++VLG ALVDMYAKC  + +A  VF  MP                               
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMM 346

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           ERN +++ A+I G   +G+  +A+  F  +    + P   TF  +L+AC +   +  GR+
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 435 ---YFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
              +  +    F+       +  + ++D+  + GL+E+   +   M +  D V W A+ 
Sbjct: 407 AHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERM-LERDNVSWNAMI 464


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 329/587 (56%), Gaps = 35/587 (5%)

Query: 5   GLISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
            ++  G  P+R +    +S   +  +L    ++   +++ N  SW   I  F+   +  E
Sbjct: 121 AILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLE 180

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A   Y+ M +  G +PD  T+  L     +  L  +G ++   + K G +++  V  +++
Sbjct: 181 AYKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLV 239

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CGD+  A  +FD+   +N+V+W  LI G+ + G    A+ L   MQ   V P+++
Sbjct: 240 GMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKI 299

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++  C     L  G+++H YI +SG    + + NAL+ MY KCG L+ A       
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEA------- 352

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                   RK+F DLP + VV W A++ GY Q     EA+ LF 
Sbjct: 353 ------------------------RKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFR 388

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
            MQ  GIKPD +T    L++CS    L +G  IH+ +    ++L+V L +ALV MYAKCG
Sbjct: 389 RMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCG 448

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++  A  VF++M ERN + +TA+I G A HG+  +A+ YF +M   G+ PD++TF  +LS
Sbjct: 449 SMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLS 508

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLV+EGRK+F  M   + + P ++HYSC VDLLGR+G LEEAE +I +MP     
Sbjct: 509 ACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGP 568

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            VWGAL  ACR+H +V  GERAA  +L+LDP D G YV L+N+Y  +  +E+A KVR++M
Sbjct: 569 SVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVM 628

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           E+R V K PG S IEV+G ++ F V DKSHPE ++IY  L +LT   
Sbjct: 629 EKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQI 675



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 157/334 (47%), Gaps = 39/334 (11%)

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           + G  +EA+ +   M L+          G++  CA+L  L  GRE+H  I +SG+     
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+ MY KCG L  A  +FD + ++ +VS                            
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVS---------------------------- 164

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              W A+I  +V   ++ EA   +  M+  G KPD VT V  L+A +    L  G  +H 
Sbjct: 165 ---WTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHM 221

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            I K    L   +GT+LV MYAKCG+I+KA  +F ++PE+N +T+T +I G A  G+   
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK---YFAQMSSIFRLSPKLKHYS 453
           A+    +M    + P++IT+  IL  C     ++ G+K   Y  Q         ++   +
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG----YGREIWVVN 337

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            ++ +  + G L+EA +L   +P   DVV W A+
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPH-RDVVTWTAM 370


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 324/565 (57%), Gaps = 35/565 (6%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++ Y   I   +   NSF WN  IRG+        A+ LY +ML + G +PDNFTYP + 
Sbjct: 73  HMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKML-HFGQKPDNFTYPFVL 131

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C  L LR +G ++   V+  G + D+YV N+++ ++   GD+  A  VFD   VR+L 
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT 191

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN++++GFV++G  R A  +F DM+ +    D  T++ ++SAC  + DL +G+EIH Y+
Sbjct: 192 SWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251

Query: 207 ---SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               ESG      L N+++DMY  C   ES             VSC              
Sbjct: 252 VRNGESGRVCNGFLMNSIIDMYCNC---ES-------------VSC-------------- 281

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            ARK+F+ L  K VV WN++I GY +   + +AL LF  M   G  PD VT +  L+AC+
Sbjct: 282 -ARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACN 340

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           Q+ AL  G  +  ++ K  + +NVV+GTAL+ MYA CG++  A +VF EMPE+N    T 
Sbjct: 341 QISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTV 400

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           ++ G  +HG+  +AIS F EM+G G+ PDE  F  +LSAC H GLVDEG++ F +M+  +
Sbjct: 401 MVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDY 460

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + P+  HYSC+VDLLGR+G L+EA  +I +M +  +  VW AL  ACRLH NV +   +
Sbjct: 461 SVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVIS 520

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A KL EL+P     YV L+N+Y     WE+   VR ++ +R + K P  S +E+N ++++
Sbjct: 521 AQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQ 580

Query: 564 FIVRDKSHPELEQIYDCLVQLTRHF 588
           F V D SH + + IY  L  L    
Sbjct: 581 FFVGDTSHEQSDDIYAKLKDLNEQL 605



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 155/328 (47%), Gaps = 35/328 (10%)

Query: 100 EIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           ++  HV   G    + Y+   +   +  CG +  A ++FD+  ++N   WNS+I G+  +
Sbjct: 43  QLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACN 102

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
             P  A+ L+  M     +PD  T   ++ AC  L    +GR++H  +   GL   V + 
Sbjct: 103 NSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVG 162

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N+++ MY K G +E+A  +FD M+ + + S  TM+ G+ K G                  
Sbjct: 163 NSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNG------------------ 204

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                         ++ A  +F +M+  G   D  T +  LSAC  +  L  G  IH ++
Sbjct: 205 -------------EARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251

Query: 339 EKENFNLNVVLG---TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +   +  V  G    +++DMY  C +++ A ++F  +  ++ +++ ++I G    G A 
Sbjct: 252 VRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAF 311

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSAC 423
            A+  F  M+ VG +PDE+T + +L+AC
Sbjct: 312 QALELFGRMVVVGAVPDEVTVISVLAAC 339



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 309 KPDAVTTVHCLSACSQLGALDD------GIWIHRFIEKE-NFNLNVVLGTALVDMYAKCG 361
           KP + +T   L   + L +L +       + +H  +        N  L T L   YA CG
Sbjct: 13  KPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCG 72

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++  A  +F ++  +NS  + ++I G A +     A+  + +M+  G  PD  T+  +L 
Sbjct: 73  HMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLK 132

Query: 422 ACCHGGLVDEGRKYFA 437
           AC    L + GRK  A
Sbjct: 133 ACGDLLLREMGRKVHA 148


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 328/567 (57%), Gaps = 27/567 (4%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           +++S  LD   ++  ++  P+  SWN  + GF +  +  E+++ + +M R      + ++
Sbjct: 91  LTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLL-NEYS 149

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           +      CA L    +G ++   V K  +  D+Y+ +A+I ++  CG +  A  VF    
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            RNLV+WNSLI  + ++G   EA+ +F  M    +EPDEVT+  +VSACA L  L  G +
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 202 IHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           IH  + ++      + L NAL+DMY KC K+  A  +FD M  + VVS T+M+ GYA+  
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +  AR +F  + ++ VV WNA+I GY Q   ++EAL LF  ++   I P   T  + L 
Sbjct: 330 SVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLK 389

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           +                        ++ +G +L+DMY KCG+I    +VF +M ER+ ++
Sbjct: 390 S------------------------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVS 425

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + AII G A +G   +A+  F +M+  G  PD +T +G+L AC H GLV+EGR YF  M 
Sbjct: 426 WNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME 485

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
               L P   HY+CMVDLLGR+G L EA+ LI +MP+  D VVWG+L  AC++HGN+ +G
Sbjct: 486 E-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMG 544

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           + AA KLLE+DP +SG YVLL+NMY +   W +  +VRK+M ++GV K PGCS IEV   
Sbjct: 545 KHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESR 604

Query: 561 LYEFIVRDKSHPELEQIYDCLVQLTRH 587
           ++ F+V+DKSHP  +QIY  L  LT  
Sbjct: 605 VHVFLVKDKSHPHRKQIYSVLKMLTEQ 631



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 100/464 (21%)

Query: 77  PDNFTYPLLFKVC----ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           P++  +  L   C    ++ G R     +   +L   F +++++ N +I V+  C  L  
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRL----VHARILMTQFSMEIFIQNRLIDVYGKCDCLDD 68

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV----- 187
           A  +FD    RN  +WNSLI+   +SGF  EA RLF  M     EPD+ +   MV     
Sbjct: 69  ARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP----EPDQCSWNSMVSGFAQ 124

Query: 188 ------------------------------SACAQLEDLNLGREIHWYISESGLTLTVPL 217
                                         SACA L DLN+G ++H  +S+S  +  V +
Sbjct: 125 HDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYM 184

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            +AL+DMY KCG +  AEE+F  M+ + +V+                             
Sbjct: 185 GSALIDMYSKCGSVACAEEVFSGMIERNLVT----------------------------- 215

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-R 336
             WN++I  Y Q   + EAL +F  M  +G++PD VT    +SAC+ L AL +G+ IH R
Sbjct: 216 --WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHAR 273

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            ++   F  ++VLG ALVDMYAKC  + +A +VF  M  RN ++ T+++ G A       
Sbjct: 274 VVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKA 333

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS--- 453
           A   FS+M    +    +++  +++     G  +E  + F  +    R S    HY+   
Sbjct: 334 ARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLK---RESIWPTHYTFGN 386

Query: 454 ----------CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
                      ++D+  + G +E+  ++   M    D V W A+
Sbjct: 387 LLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAI 429



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 162/311 (52%), Gaps = 4/311 (1%)

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L RD+ L    P+      ++ +C +       R +H  I  +  ++ + + N L+D+Y 
Sbjct: 6   LVRDLYL----PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KC  L+ A ++FD M  +   +  ++I    K GFLD A ++F  +PE     WN+++ G
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           + Q  R +E+L  F +M       +  +    LSAC+ L  L+ G  +H  + K  ++ +
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTD 181

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           V +G+AL+DMY+KCG++A A +VF  M ERN +T+ ++I     +G A +A+  F  M+ 
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            GL PDE+T   ++SAC     + EG +  A++    +    L   + +VD+  +   + 
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301

Query: 467 EAEQLIRSMPM 477
           EA ++   M +
Sbjct: 302 EARRVFDRMSI 312


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 323/593 (54%), Gaps = 40/593 (6%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           T +L  V  PN FS++  I  F +  +   A+  + QML  G   PDN   P   K CA 
Sbjct: 68  TLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRG-LMPDNRVLPSAVKACAG 126

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD------------- 138
           L       ++ G     GFD D +V ++++H+++ C  +  A  VFD             
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSAL 186

Query: 139 ------ESCVR----------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                 + CV                 NL+SWN +I GF  SG   EA+ +F DM L   
Sbjct: 187 VAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGF 246

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EPD  T+  ++ A   LEDL +G  IH Y+ + GL     +++AL+DMY KC       +
Sbjct: 247 EPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQ 306

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK----YVVPWNAIIGGYVQAKR 292
           +FD M +  V SC   I G ++ G ++ + ++F  L ++     VV W ++I    Q  R
Sbjct: 307 VFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGR 366

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             EAL LF EMQ  G+KP++VT    L AC  + AL  G   H F  +   + +V +G+A
Sbjct: 367 DIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSA 426

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMYAKCG I  +   F  +P +N + + A+I G A+HGKA +A+  F  M   G  PD
Sbjct: 427 LIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPD 486

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            I+F  +LSAC   GL +EG  YF  MSS + +  +++HY+CMV LL R+G LE+A  +I
Sbjct: 487 IISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMI 546

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           R MP+  D  VWGAL  +CR+H NVS+GE AA KL EL+P + G Y+LL+N+Y    MW 
Sbjct: 547 RRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWN 606

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           E  +VR MM+ +G+ K PGCS IEV   ++  +  DKSHP++ QI + L +L+
Sbjct: 607 EVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLS 659



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 31/244 (12%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L+  R+ H +I ++GL     LA  L+  Y        A  + D +    V S +T+I  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           ++KF                                +   AL+ F +M   G+ PD    
Sbjct: 89  FSKF-------------------------------HQFHHALSTFSQMLTRGLMPDNRVL 117

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              + AC+ L AL     +H       F+ +  + ++LV MY KC  I  A +VF  M E
Sbjct: 118 PSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFE 177

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            + ++++A++   A  G   +A   FSEM   G+ P+ I++ G+++   H GL  E    
Sbjct: 178 PDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLM 237

Query: 436 FAQM 439
           F  M
Sbjct: 238 FLDM 241



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 12/210 (5%)

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
           S +ALAL   +Q T          +CL+  S   +L      H  I K     +  L T 
Sbjct: 4   SAQALALLDSVQHT--------IFNCLN--STTASLSQTRQAHAHILKTGLFNDTHLATK 53

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+  YA     A A  V   +PE N  +++ +I   +   +   A+S FS+M+  GLMPD
Sbjct: 54  LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
                  + AC     +   R+    ++S+          S +V +  +   + +A ++ 
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVF 172

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGER 502
             M    DVV W AL  A    G V   +R
Sbjct: 173 DRM-FEPDVVSWSALVAAYARQGCVDEAKR 201


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/508 (40%), Positives = 314/508 (61%), Gaps = 4/508 (0%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH--VFVSCGDLGLACNVFDE 139
           YP+L  + +   L+ L  +I    +  G   D +V + ++        G +  A  +F  
Sbjct: 36  YPILRHLSSCKTLKDLT-QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYR 94

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNL 198
               ++   N+LI  +  S  P +A+  + +M +   V PD  T   ++ AC+++  L L
Sbjct: 95  IRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRL 154

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G  IH ++ + G +  V ++N L+ MY  CG +ESA  +FD        S   MI GY K
Sbjct: 155 GEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLK 214

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G    AR++F+ +P++ VV W+ +I GYVQ  R KE L LF +M    I+P+    V+ 
Sbjct: 215 CGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNA 274

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           LSAC+ LGA++ G WI R++E++N  L V LGTAL+DMY+KCG++ +AL+VFH+M E+N 
Sbjct: 275 LSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNV 334

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           L ++A+I GLA++G+  DA++ FS+M   G+ P+E+TF+GIL+AC H  LVDEG  +F  
Sbjct: 335 LAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHS 394

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+SI+ L P   H+ CMVDL GR+G+L++A+ +I+SMP   +  +WGAL  ACR+HG+  
Sbjct: 395 MTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTE 454

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           +GE+   +LLELDP   G YVLL+N+Y     W+   ++R+MM ER V KTPGCS I++ 
Sbjct: 455 LGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLG 514

Query: 559 GLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             ++EF+  D SHP+LE IY  L ++++
Sbjct: 515 DTIHEFVAGDSSHPQLEMIYAKLGEMSQ 542



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 200/422 (47%), Gaps = 64/422 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG+ S  F  SR+++F A+S   ++ Y   + + ++ P+ F  N  IR +  +    +AV
Sbjct: 61  TGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAV 120

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             Y +M  +    PD  T+PLL K C+ +    LG  I  HV KLG+  ++ V N ++ +
Sbjct: 121 VFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQM 180

Query: 124 FVSCGDLGLACNVFDESCV-------------------------------RNLVSWNSLI 152
           + SCG +  A  VFD +                                 R++VSW+ +I
Sbjct: 181 YASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMI 240

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           NG+V+    +E + LF+DM  E++EP+E  ++  +SACA L  +  G+ I  Y+    + 
Sbjct: 241 NGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVR 300

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           LTV L  AL+DMY KCG +E A E+F  M  K V++                        
Sbjct: 301 LTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLA------------------------ 336

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  W+A+I G     + K+AL LF +M+  G+KP+ VT +  L+ACS    +D+G 
Sbjct: 337 -------WSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGC 389

Query: 333 -WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            + H          N      +VD+Y + G + +A  V   MP + NS  + A++    +
Sbjct: 390 SFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRI 449

Query: 391 HG 392
           HG
Sbjct: 450 HG 451


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 339/583 (58%), Gaps = 41/583 (7%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           T  ++H    SRL+A  A     NL Y   +   +Q P   SWN+ I+ ++E  +  +A+
Sbjct: 41  TASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAI 100

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+ ++L +    PD+FT P + K CA LG    G +I G VLK+GF VD +V ++++ +
Sbjct: 101 ALFCKLLCD--FVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSM 158

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG++ L   VFD    +++VSWNSLI+G+ R G    A+ +F +M     E D  + 
Sbjct: 159 YSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP----EKDSFS- 213

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
                               W I              L+D   K GKLE+A ++FD M  
Sbjct: 214 --------------------WTI--------------LIDGLSKSGKLEAARDVFDRMPI 239

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +  VS   MI GY K G  + A+++FD +PE+ +V WN++I GY + K+  +AL LF  M
Sbjct: 240 RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVM 299

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
               I P+  T +  +SA S + +L  G W+H +I K  F  + VLGT L++MY+KCG++
Sbjct: 300 LREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSV 359

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             AL+VF  +P++    +T++I GL +HG     +  F EM   GL P  ITF+G+L+AC
Sbjct: 360 KSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNAC 419

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H G  ++  +YF  M+  + + P ++HY C++D+L R+G LEEA+  I  MP+ A+ V+
Sbjct: 420 SHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVI 479

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W +L    R HGN+ +GE AA  L++L P  +G YV+L+NMY  + +WE+  +VR+MM++
Sbjct: 480 WTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKK 539

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +G++K PGCSSIE  G ++EFIV DKSHP+ E+IY  L ++ +
Sbjct: 540 KGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKK 582


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 332/575 (57%), Gaps = 45/575 (7%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM----REAVDLYKQM 69
           SRL+  C  + +    Y  ++L  +Q P+   W+  +  F  +G++    R +   Y+QM
Sbjct: 40  SRLLRRC--TAATQFRYARRLLCQIQTPSIQLWDSLVGHF--SGRVTLNRRLSFLSYRQM 95

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLG-YEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
            RNG   P   T+P L K  A   LR    ++   H+LK GFD D++V N++I  + +CG
Sbjct: 96  RRNGVV-PSRHTFPPLLK--AVFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYSNCG 152

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
                  VFD +  +++VSW ++I+GFVR+    EA+  F +M+   V  +E+T++ ++ 
Sbjct: 153 LFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLK 212

Query: 189 ACAQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           A  + ED+  GR IH +  E+G +   V + ++L+DMY KCG                  
Sbjct: 213 ATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCG------------------ 254

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
            C             D A+K+FD++P + VV W A+I GYVQ +  ++ + +F EM  + 
Sbjct: 255 -C------------YDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSD 301

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           + P+  T    LSAC+ +GAL  G  +H ++ K +  +N  +GT L+D YAKCG + +A+
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAI 361

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VF  + E+N  T+TA+I G A HG A+ A+  F  M+   + P+E+TF+ +LSAC HGG
Sbjct: 362 LVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGG 421

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LV+EGR+ F  M   F L PK  HY+CMVDL GR GLLEEA+ LI  MPM     VWGAL
Sbjct: 422 LVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGAL 481

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           F +C +H +  +G+ AA ++++L P  SG Y LLAN+Y +S  W++  +VRK M+++ V 
Sbjct: 482 FGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVV 541

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHP-ELEQIYDCL 581
           K+PGCS IEV G L+EFI  D   P E + +Y  L
Sbjct: 542 KSPGCSWIEVKGKLHEFIAFDDKKPLESDDLYKTL 576


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 342/577 (59%), Gaps = 15/577 (2%)

Query: 14  SRLIAFCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           SRL+ F A+S  +NL+    +LFN     PN + +N  I GF  + +  +A  +Y+ ML+
Sbjct: 2   SRLLFFSAVSHPENLELAI-LLFNHFTPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQ 58

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLG--YEIFGHVLKLGF-DVDMYVHNAVIHVFVSCG 128
           NG T PD  T+  L +       +F+    +I  H L  G    + Y+ N++I  +V  G
Sbjct: 59  NG-TYPDRQTFLYLLQTT-----KFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNG 112

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
               A  +FDE   RN+VS+N++I GF + G     + LF DM+   +EPD+ TM+G++ 
Sbjct: 113 CFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLL 172

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
            C QL +  LG+ +H  I +S  +  + L NAL+DMYVKC +L+ A ++FD  + K  VS
Sbjct: 173 LCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVS 232

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
             T+I GYAK G L++A  +F+ +P + +V WN++I GY Q         LF  M A  +
Sbjct: 233 WNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENV 292

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           KPD VT V+ +SA +++GALD G WIH    K    +    G+AL+DMY KCG+I +A  
Sbjct: 293 KPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFV 352

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           +F+++PE++  T+T +I G A HG    A+  FS M      P+++TF+ +L+AC H GL
Sbjct: 353 IFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAACSHSGL 411

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           VDEG K F+ M   + + P ++HY C+VDLL RSG L +A  +I  MPM     +WGA+ 
Sbjct: 412 VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVL 471

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
            ACR+H N+ + ERA M+LL+L+P+  G Y+LL+N+Y     W  +  +R++M  RGV+K
Sbjct: 472 SACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKK 531

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
             GCSS+ V+G++++F   +K HP    I   L  LT
Sbjct: 532 IAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLT 568


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 339/583 (58%), Gaps = 37/583 (6%)

Query: 6   LISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +IS GF    L+A   +   S+   L    K+   + + N  +WN  I GF++ G M EA
Sbjct: 99  VISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEA 158

Query: 63  VDLYKQMLRNGGTRPDNFTYP-LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
             L+ +M+ + G  PD+ T+   L  V  S  L+  G EI G++L+ G  +D+++ +A+I
Sbjct: 159 SLLFSEMI-SAGVSPDSITFASFLPSVTESASLK-QGKEIHGYILRHGIALDVFLKSALI 216

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  C D+G+AC +F +S   ++V   ++I+G+V +G   +A+ +FR +  E++ P+ V
Sbjct: 217 DIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAV 276

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+  ++ ACA L  LNLG+E+H  I + GL     + +A+MDMY KCG+L          
Sbjct: 277 TLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRL---------- 326

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                D+A +IF  +PEK  V WNAII    Q  + +EA+ LF 
Sbjct: 327 ---------------------DLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFR 365

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           +M   G+  D V+    LSAC+ L AL  G  IH F+ K  F+  V   +AL+DMY KCG
Sbjct: 366 QMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCG 425

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           N++ A  VF  M E+N +++ +II     HG    +++ F +M+  G+ PD +TFL ILS
Sbjct: 426 NLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILS 485

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H G VD+G +YF  M+  + +  +++HY+C+VDL GR+G L EA + I++MP + D 
Sbjct: 486 ACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDD 545

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            VWG L  ACR+HGNV + E A+  LL+LDP++SG YVLL+N++ D+  W    K+R +M
Sbjct: 546 GVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLM 605

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           ++RGV+K PG S IEVN   + F+  D SHPE  QIY  L  L
Sbjct: 606 KKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNL 648



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 257/538 (47%), Gaps = 38/538 (7%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  S LI   A  E+  ++   ++   + N +   WNV + GF++ G+   AV +++ M 
Sbjct: 8   FVGSSLIKLYA--ENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDM- 64

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           RN  T+P++ T+  +  +CAS  L   G ++ G V+  GF  D  V NA++ ++   G L
Sbjct: 65  RNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQL 124

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +F+     N+V+WN +I GFV++GF  EA  LF +M    V PD +T    + + 
Sbjct: 125 SDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSV 184

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            +   L  G+EIH YI   G+ L V L +AL+D+Y KC  +  A +IF    N  +V CT
Sbjct: 185 TESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCT 244

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                          AII GYV    + +AL +F  +    + P
Sbjct: 245 -------------------------------AIISGYVLNGLNNDALEIFRWLLEEKMSP 273

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +AVT    L AC+ L  L+ G  +H  I K   +    +G+A++DMYAKCG +  A Q+F
Sbjct: 274 NAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIF 333

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             MPE++++ + AII   + +GK  +AI  F +M   GL  D ++    LSAC +   + 
Sbjct: 334 RRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALH 393

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
            G+   + M        ++   S ++D+ G+ G L  A + +  M    + V W ++  A
Sbjct: 394 HGKAIHSFMIK-GAFDSEVFAESALIDMYGKCGNLSVA-RCVFDMMREKNEVSWNSIIAA 451

Query: 491 CRLHGNVSIGERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
              HG++ +      K+LE  + P       +L+       + +     R M EE G+
Sbjct: 452 YGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGI 509



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 194/388 (50%), Gaps = 33/388 (8%)

Query: 108 LGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL 167
           +GF+VD +V +++I ++   G +  A  +FD+   ++ V WN ++NGFV+ G P  A+++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 168 FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
           F DM+  + +P+ +T   ++S CA       G ++H  +   G      +ANAL+ MY  
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMY-- 118

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
                                        +KFG L  A K+F+ +P+  VV WN +I G+
Sbjct: 119 -----------------------------SKFGQLSDALKLFNTMPDTNVVTWNGMIAGF 149

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
           VQ     EA  LF EM + G+ PD++T    L + ++  +L  G  IH +I +    L+V
Sbjct: 150 VQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDV 209

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
            L +AL+D+Y KC ++  A ++F +    + +  TAII G  L+G   DA+  F  ++  
Sbjct: 210 FLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEE 269

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
            + P+ +T   +L AC     ++ G++  A +     L  +    S ++D+  + G L+ 
Sbjct: 270 KMSPNAVTLASVLPACAGLATLNLGKELHANILK-HGLDERRHVGSAIMDMYAKCGRLDL 328

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHG 495
           A Q+ R MP   D V W A+   C  +G
Sbjct: 329 AYQIFRRMP-EKDAVCWNAIITNCSQNG 355


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 337/587 (57%), Gaps = 37/587 (6%)

Query: 1   MTITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           + ++GL+  GF  ++ + A   I E   + Y  K+      P+ F WN  IRG+      
Sbjct: 94  LVVSGLVESGFLVTKFVNASWNIGE---IGYARKVFDEFPEPSVFLWNAIIRGYSSHNFF 150

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +A+++Y +M +  G  PD FT P + K C+ + +  +G  + G + +LGF+ D++V N 
Sbjct: 151 GDAIEMYSRM-QASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ ++  CG +  A  VF+    RN+VSW S+I+G+ ++G P EA+R+F  M+   V+PD
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            + ++ ++ A   +EDL  G+ IH  + + GL     L  +L  MY KCG++        
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM------- 322

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                   +AR  FD +    V+ WNA+I GY +   + EA+ L
Sbjct: 323 ------------------------VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGL 358

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F EM +  I+ D++T    + AC+Q+G+LD   W+  +I K  +  +V + TAL+DM+AK
Sbjct: 359 FQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAK 418

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++  A +VF    +++ + ++A+I G  LHG+  DAI  F  M   G+ P+++TF+G+
Sbjct: 419 CGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGL 478

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GLV+EG + F  M   + +  + +HY+C+VDLLGRSG L EA   I +MP+  
Sbjct: 479 LTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEP 537

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
            V VWGAL  AC+++ +V++GE AA +L  LDP ++G YV L+N+Y  S +W+   KVR 
Sbjct: 538 GVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRI 597

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +M E+G+ K  G S IE+NG L  F V DKSHP  ++I++ L  L R
Sbjct: 598 LMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLER 644



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 74/339 (21%)

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           +IH  +  SGL  +  L    ++     G++  A ++FD                     
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFD--------------------- 127

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                     + PE  V  WNAII GY       +A+ ++  MQA+G+ PD  T    L 
Sbjct: 128 ----------EFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLK 177

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           ACS +  L+ G  +H  I +  F  +V +   LV +YAKCG + +A  VF  + +RN ++
Sbjct: 178 ACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVS 237

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA-----------CCHGGLV 429
           +T++I G   +G  ++A+  F +M    + PD I  + +L A             HG +V
Sbjct: 238 WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVV 297

Query: 430 DEG------------------------RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G                        R +F QM       P +  ++ M+    ++G  
Sbjct: 298 KMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQME-----IPNVMMWNAMISGYAKNGYT 352

Query: 466 EEAEQLIRSM---PMAADVVVWGALFFACRLHGNVSIGE 501
            EA  L + M    +  D +   +   AC   G++ + +
Sbjct: 353 NEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAK 391


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 324/547 (59%), Gaps = 33/547 (6%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V+  N  SW   I GF + G++ EA   + +M+ +G   P+  T+  +   C+S      
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG-IEPNRVTFMSILGACSSPSALKR 431

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G +I  H+++ G+  D  V  A++ ++  CG L  A  VF++   +N+V+WN++I  +V+
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
                 A+  F+ +  E ++P+  T   +++ C   + L LG+ +H+ I ++GL   + +
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           +NAL+ M+V CG L SA                               + +F+D+P++ +
Sbjct: 552 SNALVSMFVNCGDLMSA-------------------------------KNLFNDMPKRDL 580

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WN II G+VQ  +++ A   F  MQ +GIKPD +T    L+AC+   AL +G  +H  
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I +  F+ +V++GT L+ MY KCG+I  A QVFH++P++N  ++T++I G A HG+  +A
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEA 700

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F +M   G+ PD ITF+G LSAC H GL++EG  +F  M   F + P+++HY CMVD
Sbjct: 701 LELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVD 759

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           L GR+GLL EA + I  M +  D  VWGAL  AC++H NV + E+AA K LELDP D+G+
Sbjct: 760 LFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGV 819

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +V+L+N+Y  + MW+E  K+RK+M +RGV K PG S IEV+G ++ F   DK+HP+ E+I
Sbjct: 820 FVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEI 879

Query: 578 YDCLVQL 584
           +  L +L
Sbjct: 880 HAELERL 886



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/469 (30%), Positives = 240/469 (51%), Gaps = 36/469 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +I  +++  + +SWN+ + G+++ G   EA  L++QM+++   +PD  T+  +   CA  
Sbjct: 166 QIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACADA 224

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G E++  +LK G+D D++V  A+I++ + CGD+G A  VFD    R+LV+W S+I
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMI 284

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G  R G  ++A  LF+ M+ E V+PD+V  + ++ AC   E L  G+++H  + E G  
Sbjct: 285 TGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWD 344

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +  A++ MY KCG +E A E+FD +  + VVS T MI G+A+ G +D         
Sbjct: 345 TEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID--------- 395

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EA   F++M  +GI+P+ VT +  L ACS   AL  G 
Sbjct: 396 ----------------------EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            I   I +  +  +  + TAL+ MYAKCG++  A +VF ++ ++N + + A+I     H 
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR-KYFAQMSSIFRLSPKLKH 451
           +  +A++ F  ++  G+ P+  TF  IL+ C     ++ G+  +F  M +   L   L  
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHV 551

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            + +V +    G L  A+ L   MP   D+V W  +      HG   + 
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 226/464 (48%), Gaps = 34/464 (7%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           TK+  N+   +  +W   I G    G+ ++A +L+++M    G +PD   +  L + C  
Sbjct: 266 TKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM-EEEGVQPDKVAFVSLLRACNH 324

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
                 G ++   + ++G+D ++YV  A++ ++  CG +  A  VFD    RN+VSW ++
Sbjct: 325 PEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I GF + G   EA   F  M    +EP+ VT + ++ AC+    L  G++I  +I E+G 
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
                +  AL+ MY KCG L+ A  +F+ +  + VV+                       
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA----------------------- 481

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                   WNA+I  YVQ ++   ALA F  +   GIKP++ T    L+ C    +L+ G
Sbjct: 482 --------WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            W+H  I K     ++ +  ALV M+  CG++  A  +F++MP+R+ +++  II G   H
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQH 593

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           GK   A  YF  M   G+ PD+ITF G+L+AC     + EGR+  A ++        +  
Sbjct: 594 GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA-AFDCDVLV 652

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            + ++ +  + G +E+A Q+   +P   +V  W ++      HG
Sbjct: 653 GTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHG 695



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 242/470 (51%), Gaps = 38/470 (8%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  L ++C        G  I+ H+ K G   D+++ N +I+++  CG+   A  +FD+ 
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +++ SWN L+ G+V+ G   EA +L   M  + V+PD+ T + M++ACA   +++ GR
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E++  I ++G    + +  AL++M++KCG +  A                          
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDAT------------------------- 266

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                 K+FD+LP + +V W ++I G  +  R K+A  LF  M+  G++PD V  V  L 
Sbjct: 267 ------KVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+   AL+ G  +H  +++  ++  + +GTA++ MY KCG++  AL+VF  +  RN ++
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-M 439
           +TA+I G A HG+  +A  +F++MI  G+ P+ +TF+ IL AC     +  G++     +
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
            + +    +++  + ++ +  + G L++A ++   +    +VV W A+  A   H     
Sbjct: 441 EAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDN 497

Query: 500 GERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
                  LL+  + P +S  +  + N+ + S+  E    V  ++ + G+E
Sbjct: 498 ALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 186/364 (51%), Gaps = 35/364 (9%)

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           C VF +  +++    N+++N   ++G   EA+++   +    ++    T   ++  C + 
Sbjct: 66  CVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKF 123

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           ++L  G  I+ +I +SG+   + + N L++MY KCG   SA                   
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISA------------------- 164

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                       ++IFDD+ EK V  WN ++GGYVQ    +EA  L  +M    +KPD  
Sbjct: 165 ------------KQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKR 212

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T V  L+AC+    +D G  ++  I K  ++ ++ +GTAL++M+ KCG+I  A +VF  +
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           P R+ +T+T++I GLA HG+   A + F  M   G+ PD++ F+ +L AC H   +++G+
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK 332

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           K  A+M  +     ++   + ++ +  + G +E+A ++   +    +VV W A+      
Sbjct: 333 KVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKGRNVVSWTAMIAGFAQ 390

Query: 494 HGNV 497
           HG +
Sbjct: 391 HGRI 394


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 324/547 (59%), Gaps = 33/547 (6%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V+  N  SW   I GF + G++ EA   + +M+ +G   P+  T+  +   C+S      
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG-IEPNRVTFMSILGACSSPSALKR 431

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G +I  H+++ G+  D  V  A++ ++  CG L  A  VF++   +N+V+WN++I  +V+
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
                 A+  F+ +  E ++P+  T   +++ C   + L LG+ +H+ I ++GL   + +
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           +NAL+ M+V CG L SA                               + +F+D+P++ +
Sbjct: 552 SNALVSMFVNCGDLMSA-------------------------------KNLFNDMPKRDL 580

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WN II G+VQ  +++ A   F  MQ +GIKPD +T    L+AC+   AL +G  +H  
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I +  F+ +V++GT L+ MY KCG+I  A QVFH++P++N  ++T++I G A HG+  +A
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEA 700

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F +M   G+ PD ITF+G LSAC H GL++EG  +F  M   F + P+++HY CMVD
Sbjct: 701 LELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVD 759

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           L GR+GLL EA + I  M +  D  VWGAL  AC++H NV + E+AA K LELDP D+G+
Sbjct: 760 LFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGV 819

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +V+L+N+Y  + MW+E  K+RK+M +RGV K PG S IEV+G ++ F   DK+HP+ E+I
Sbjct: 820 FVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEI 879

Query: 578 YDCLVQL 584
           +  L +L
Sbjct: 880 HAELERL 886



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/469 (30%), Positives = 240/469 (51%), Gaps = 36/469 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +I  +++  + +SWN+ + G+++ G   EA  L++QM+++   +PD  T+  +   CA  
Sbjct: 166 QIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACADA 224

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G E++  +LK G+D D++V  A+I++ + CGD+G A  VFD    R+LV+W S+I
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMI 284

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G  R G  ++A  LF+ M+ E V+PD+V  + ++ AC   E L  G+++H  + E G  
Sbjct: 285 TGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWD 344

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +  A++ MY KCG +E A E+FD +  + VVS T MI G+A+ G +D         
Sbjct: 345 TEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID--------- 395

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EA   F++M  +GI+P+ VT +  L ACS   AL  G 
Sbjct: 396 ----------------------EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            I   I +  +  +  + TAL+ MYAKCG++  A +VF ++ ++N + + A+I     H 
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR-KYFAQMSSIFRLSPKLKH 451
           +  +A++ F  ++  G+ P+  TF  IL+ C     ++ G+  +F  M +   L   L  
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHV 551

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            + +V +    G L  A+ L   MP   D+V W  +      HG   + 
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 226/464 (48%), Gaps = 34/464 (7%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           TK+  N+   +  +W   I G    G+ ++A +L+++M    G +PD   +  L + C  
Sbjct: 266 TKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM-EEEGVQPDKVAFVSLLRACNH 324

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
                 G ++   + ++G+D ++YV  A++ ++  CG +  A  VFD    RN+VSW ++
Sbjct: 325 PEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I GF + G   EA   F  M    +EP+ VT + ++ AC+    L  G++I  +I E+G 
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
                +  AL+ MY KCG L+ A  +F+ +  + VV+                       
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA----------------------- 481

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                   WNA+I  YVQ ++   ALA F  +   GIKP++ T    L+ C    +L+ G
Sbjct: 482 --------WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            W+H  I K     ++ +  ALV M+  CG++  A  +F++MP+R+ +++  II G   H
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQH 593

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           GK   A  YF  M   G+ PD+ITF G+L+AC     + EGR+  A ++        +  
Sbjct: 594 GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA-AFDCDVLV 652

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            + ++ +  + G +E+A Q+   +P   +V  W ++      HG
Sbjct: 653 GTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHG 695



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 242/470 (51%), Gaps = 38/470 (8%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  L ++C        G  I+ H+ K G   D+++ N +I+++  CG+   A  +FD+ 
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +++ SWN L+ G+V+ G   EA +L   M  + V+PD+ T + M++ACA   +++ GR
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E++  I ++G    + +  AL++M++KCG +  A                          
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDAT------------------------- 266

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                 K+FD+LP + +V W ++I G  +  R K+A  LF  M+  G++PD V  V  L 
Sbjct: 267 ------KVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+   AL+ G  +H  +++  ++  + +GTA++ MY KCG++  AL+VF  +  RN ++
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-M 439
           +TA+I G A HG+  +A  +F++MI  G+ P+ +TF+ IL AC     +  G++     +
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
            + +    +++  + ++ +  + G L++A ++   +    +VV W A+  A   H     
Sbjct: 441 EAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDN 497

Query: 500 GERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
                  LL+  + P +S  +  + N+ + S+  E    V  ++ + G+E
Sbjct: 498 ALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 186/364 (51%), Gaps = 35/364 (9%)

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           C VF +  +++    N+++N   ++G   EA+++   +    ++    T   ++  C + 
Sbjct: 66  CVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKF 123

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           ++L  G  I+ +I +SG+   + + N L++MY KCG   SA                   
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISA------------------- 164

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                       ++IFDD+ EK V  WN ++GGYVQ    +EA  L  +M    +KPD  
Sbjct: 165 ------------KQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKR 212

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T V  L+AC+    +D G  ++  I K  ++ ++ +GTAL++M+ KCG+I  A +VF  +
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           P R+ +T+T++I GLA HG+   A + F  M   G+ PD++ F+ +L AC H   +++G+
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK 332

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           K  A+M  +     ++   + ++ +  + G +E+A ++   +    +VV W A+      
Sbjct: 333 KVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKGRNVVSWTAMIAGFAQ 390

Query: 494 HGNV 497
           HG +
Sbjct: 391 HGRI 394


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 351/609 (57%), Gaps = 37/609 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCA--ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           +T +G I+H  +   L++     IS  ++L Y   +   + +  +F ++ A+R  L+   
Sbjct: 22  LTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDTALRACLQASA 81

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF---DVDMY 115
             +   L  + +R+GG R   FT+  +F+ CA+      G  +  H   L          
Sbjct: 82  GADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPL 141

Query: 116 VHNAVIHVFVSCGDLGLACNVFDE-------------------------------SCVRN 144
           V N +IH++ S G    A   FDE                               +  RN
Sbjct: 142 VANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 201

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +VSW SLI G+ R+G P +A+  F  M  + V PDEV +IG +SAC++L++L+LGR +H 
Sbjct: 202 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHL 261

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD 263
            + +  + +T  L  AL+DMY KCG +  A+ +FD++   +       +I GY K G +D
Sbjct: 262 LVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVD 321

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
           +AR +FD +  + V+ +N++I GY+ + R ++AL LF +M+  G++ D  T V  L+AC+
Sbjct: 322 VARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACA 381

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LGAL  G  +H  IE+     +V LGTAL+DMY KCG + +A  VFH M ER+  T+TA
Sbjct: 382 SLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTA 441

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GLA +G   DA+  F +M   G  P  +T++ +L+AC H  L+DEGR +F +M S+ 
Sbjct: 442 MIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLH 501

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           +L P+++HY CM+DLL RSGLL+EA  L+++MPM  + V+WG++  ACR+H N+ +   A
Sbjct: 502 KLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHA 561

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A  LL+L P++  +YV L N+Y DS  W +A +VR +MEERGV+KT G SSI V G +++
Sbjct: 562 AEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHK 621

Query: 564 FIVRDKSHP 572
           F+  D+SHP
Sbjct: 622 FVANDQSHP 630


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/619 (35%), Positives = 336/619 (54%), Gaps = 78/619 (12%)

Query: 43  SFSWNVAIRGFLETGKMR-----EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           S+S N AI  FL T  ++     +A  +Y  M R   T  DNF  P + K C  +    L
Sbjct: 84  SYSSNAAIHSFLITSYIKNNCPADAAKIYAYM-RGTDTEVDNFVIPSVLKACCLIPSFLL 142

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G E+ G V+K GF  D++V NA+I ++   G L LA  +FD+   +++VSW+++I  + R
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL--TLTV 215
           SG   EA+ L RDM + RV+P E+ MI +    A+L DL LG+ +H Y+  +G      V
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGV 262

Query: 216 PLANALMDM-------------------------------YVKCGKLESAEEIFDSMVNK 244
           PL  AL+DM                               Y+ C  L     +F  M+ +
Sbjct: 263 PLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGE 322

Query: 245 ---------------------------------------TVVSCTTMIVGYAKFGFLDIA 265
                                                  ++V  T  I  Y K G +  A
Sbjct: 323 GMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           R +FD    K ++ W+A+I  Y Q     EA  +F  M   GI+P+  T V  L  C++ 
Sbjct: 383 RSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKA 442

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           G+L+ G WIH +I+K+    +++L T+ VDMYA CG+I  A ++F E  +R+   + A+I
Sbjct: 443 GSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMI 502

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G A+HG    A+  F EM  +G+ P++ITF+G L AC H GL+ EG++ F +M   F  
Sbjct: 503 SGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGF 562

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
           +PK++HY CMVDLLGR+GLL+EA +LI+SMPM  ++ V+G+   AC+LH N+ +GE AA 
Sbjct: 563 TPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAK 622

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           + L L+P  SG  VL++N+Y  +N W +   +R+ M++ G+ K PG SSIEVNGLL+EFI
Sbjct: 623 QFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFI 682

Query: 566 VRDKSHPELEQIYDCLVQL 584
           + D+ HP+ +++Y+ + ++
Sbjct: 683 MGDREHPDAKKVYEMIDEM 701



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 34/368 (9%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           +NL Y  ++   +   +  SW   I  ++    + E V L+ +ML   G  P+  T   L
Sbjct: 276 ENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML-GEGMFPNEITMLSL 334

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K C + G   LG  +    L+ GF + + +  A I ++  CGD+  A +VFD    ++L
Sbjct: 335 VKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDL 394

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           + W+++I+ + ++    EA  +F  M    + P+E TM+ ++  CA+   L +G+ IH Y
Sbjct: 395 MMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSY 454

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           I + G+   + L  + +DMY  CG +++A  +F    ++ +     MI G+A  G     
Sbjct: 455 IDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHG----- 509

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                       + AL LF EM+A G+ P+ +T +  L ACS  
Sbjct: 510 --------------------------HGEAALELFEEMEALGVTPNDITFIGALHACSHS 543

Query: 326 GALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTA 383
           G L +G  + H+ + +  F   V     +VD+  + G + +A ++   MP R N   + +
Sbjct: 544 GLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGS 603

Query: 384 IIGGLALH 391
            +    LH
Sbjct: 604 FLAACKLH 611



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 37/352 (10%)

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           ES   N    + LI  ++++  P +A +++  M+    E D   +  ++ AC  +    L
Sbjct: 83  ESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLL 142

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+E+H ++ ++G    V + NAL+ MY + G L  A  +FD + NK VVS +TMI  Y +
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G LD                               EAL L  +M    +KP  +  +  
Sbjct: 203 SGLLD-------------------------------EALDLLRDMHVMRVKPSEIGMISI 231

Query: 319 LSACSQLGALDDGIWIHRFIEKENF--NLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
               ++L  L  G  +H ++ +        V L TAL+DMY KC N+A A +VF  + + 
Sbjct: 232 THVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKA 291

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + +++TA+I          + +  F +M+G G+ P+EIT L ++  C   G ++ G+   
Sbjct: 292 SIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLH 351

Query: 437 A-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           A  + + F LS  L   +  +D+ G+ G +  A  +  S   + D+++W A+
Sbjct: 352 AFTLRNGFTLSLVLA--TAFIDMYGKCGDVRSARSVFDSFK-SKDLMMWSAM 400


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/488 (41%), Positives = 303/488 (62%), Gaps = 3/488 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVS-CGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +I   ++K G   D    + V+    S  GD+  A  VF +    NL  WN++I GF +S
Sbjct: 14  KIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQS 73

Query: 159 GFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
             P  AI LF DM       +P  +T   +  A AQL   + G ++H  + + GL     
Sbjct: 74  STPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQF 133

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N +++MYV CG L  A+ IFD      VV+  TMI+G AK G +D +R++FD +  + 
Sbjct: 134 IQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRN 193

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V WN++I GYV+  R  EA+ LF  MQ  GIKP   T V  L+AC+ LGAL  G WIH 
Sbjct: 194 TVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHD 253

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +I K NF LN ++ TA++DMY+KCG+I KALQVF   P++    + ++I GLA+ G+  +
Sbjct: 254 YIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNE 313

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  FS++    L PD ++F+G+L+AC H G+VD  + YF  MS  +++ P +KHYSCMV
Sbjct: 314 AVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMV 373

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           D+LGR+GLLEEAE+LI+SMP+  D ++WG+L  +CR +GN+ + ++AA ++ ELDP +S 
Sbjct: 374 DVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESS 433

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            ++LL+N+Y   N +EEA + R  ++E+ ++K PGCS IEVNG ++EF+   + HP  + 
Sbjct: 434 SFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHPRSKD 493

Query: 577 IYDCLVQL 584
           IY  L  L
Sbjct: 494 IYHALDDL 501



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 200/404 (49%), Gaps = 65/404 (16%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL     A SR++AFC  S + +++Y   +   ++NPN F WN  IRGF ++     A+
Sbjct: 22  TGLAKDTIAASRVLAFCT-SPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAI 80

Query: 64  DLY-KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            L+   M  +  T+P   TYP +FK  A LGL   G ++ G V+KLG + D ++ N +++
Sbjct: 81  SLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILN 140

Query: 123 VFVSCGDLGLACNVFDESC-------------------------------VRNLVSWNSL 151
           ++V+CG LG A  +FD +                                +RN VSWNS+
Sbjct: 141 MYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSM 200

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I+G+VR G   EA+ LF  MQ E ++P E TM+ +++ACA L  L  G  IH YI ++  
Sbjct: 201 ISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNF 260

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            L   +  A++DMY KCG ++ A ++F S                               
Sbjct: 261 ALNSIVITAIIDMYSKCGSIDKALQVFKSA------------------------------ 290

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
            P+K +  WN++I G   + R  EA+ LF +++++ +KPD V+ +  L+AC+  G +D  
Sbjct: 291 -PKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRA 349

Query: 332 I-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
             +     E      ++   + +VD+  + G + +A ++   MP
Sbjct: 350 KDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMP 393



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SWN  I G++  G+  EA++L+ +M +  G +P  FT   L   CA LG    G  I
Sbjct: 193 NTVSWNSMISGYVRKGRFFEAMELFSRM-QEEGIKPSEFTMVSLLNACACLGALRQGEWI 251

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             +++K  F ++  V  A+I ++  CG +  A  VF  +  + L  WNSLI G   SG  
Sbjct: 252 HDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRG 311

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANA 220
            EA+RLF  ++   ++PD V+ IG+++AC     ++  ++    +SE+  +  ++   + 
Sbjct: 312 NEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSC 371

Query: 221 LMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++D+  + G LE AEE+  SM VN   +   +++    ++G +++A++
Sbjct: 372 MVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQ 419


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 336/591 (56%), Gaps = 36/591 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETG 57
           M  T +I  GFA   ++   A+   ++    +   K+   +   +  SWN  I  + + G
Sbjct: 319 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 378

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
           +  +A++L+++M +  G +PD+ T   +   CA L     G EI   +++ GF +D +V 
Sbjct: 379 QPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS 437

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           +A++ ++  CG L +A  VF++   +N+VSWNS+I G+   G  +  I LFR M  E + 
Sbjct: 438 SALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIR 497

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P   T+  ++ AC++  +L LG+ IH YI  + +   + + ++L+D+Y KCG + SAE  
Sbjct: 498 PTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE-- 555

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
                                         +F ++P+  VV WN +I GYV+     EAL
Sbjct: 556 -----------------------------NVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 586

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F +M+  G+KPDA+T    L ACSQL  L+ G  IH FI +    +N V+  AL+DMY
Sbjct: 587 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMY 646

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG + +AL +F+++PER+ +++T++I     HG+A +A+  F +M      PD++TFL
Sbjct: 647 AKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFL 706

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP- 476
            ILSAC H GLVDEG  YF QM + +   P ++HYSC++DLLGR G L EA ++++  P 
Sbjct: 707 AILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD 766

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  DV +   LF AC LH  + +GE+    L+E DP D   Y++L+NMY     W+E  K
Sbjct: 767 IREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRK 826

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           VR  ++E G++K PGCS IEV   ++ F+V DKSHP+ + IY+C+  L  H
Sbjct: 827 VRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASH 877



 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 247/484 (51%), Gaps = 47/484 (9%)

Query: 32  TKILFN-VQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
            K++F  ++NP   + WN  +    +     E ++++ ++L     +PD FTYP + K C
Sbjct: 249 AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC 308

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           + LG    G  +  HV+K GF +D+ V ++ + ++  C     A  +FDE   R++ SWN
Sbjct: 309 SGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWN 368

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+ + + G P +A+ LF +M++   +PD VT+  ++S+CA+L DL  G+EIH  +  S
Sbjct: 369 NVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS 428

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G  L   +++AL+DMY KCG LE A+E+F+ +  K VVS  +MI GY+  G         
Sbjct: 429 GFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKG--------- 479

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  SK  + LF  M   GI+P   T    L ACS+   L 
Sbjct: 480 ----------------------DSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQ 517

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G +IH +I +     ++ + ++L+D+Y KCGNI  A  VF  MP+ N +++  +I G  
Sbjct: 518 LGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYV 577

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             G  L+A+  F++M   G+ PD ITF  +L AC    ++++G++        F +  KL
Sbjct: 578 KVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHN-----FIIESKL 632

Query: 450 K----HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
           +        ++D+  + G ++EA  +   +P   D V W ++  A   HG        A+
Sbjct: 633 EINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAF----EAL 687

Query: 506 KLLE 509
           KL E
Sbjct: 688 KLFE 691


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 336/591 (56%), Gaps = 36/591 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETG 57
           M  T +I  GFA   ++   A+   ++    +   K+   +   +  SWN  I  + + G
Sbjct: 127 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
           +  +A++L+++M +  G +PD+ T   +   CA L     G EI   +++ GF +D +V 
Sbjct: 187 QPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS 245

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           +A++ ++  CG L +A  VF++   +N+VSWNS+I G+   G  +  I LFR M  E + 
Sbjct: 246 SALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIR 305

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P   T+  ++ AC++  +L LG+ IH YI  + +   + + ++L+D+Y KCG + SAE  
Sbjct: 306 PTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE-- 363

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
                                         +F ++P+  VV WN +I GYV+     EAL
Sbjct: 364 -----------------------------NVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 394

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F +M+  G+KPDA+T    L ACSQL  L+ G  IH FI +    +N V+  AL+DMY
Sbjct: 395 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMY 454

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG + +AL +F+++PER+ +++T++I     HG+A +A+  F +M      PD++TFL
Sbjct: 455 AKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFL 514

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP- 476
            ILSAC H GLVDEG  YF QM + +   P ++HYSC++DLLGR G L EA ++++  P 
Sbjct: 515 AILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD 574

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  DV +   LF AC LH  + +GE+    L+E DP D   Y++L+NMY     W+E  K
Sbjct: 575 IREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRK 634

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           VR  ++E G++K PGCS IEV   ++ F+V DKSHP+ + IY+C+  L  H
Sbjct: 635 VRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASH 685



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 247/484 (51%), Gaps = 47/484 (9%)

Query: 32  TKILFN-VQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
            K++F  ++NP   + WN  +    +     E ++++ ++L     +PD FTYP + K C
Sbjct: 57  AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC 116

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           + LG    G  +  HV+K GF +D+ V ++ + ++  C     A  +FDE   R++ SWN
Sbjct: 117 SGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWN 176

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+ + + G P +A+ LF +M++   +PD VT+  ++S+CA+L DL  G+EIH  +  S
Sbjct: 177 NVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS 236

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G  L   +++AL+DMY KCG LE A+E+F+ +  K VVS  +MI GY+  G         
Sbjct: 237 GFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKG--------- 287

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  SK  + LF  M   GI+P   T    L ACS+   L 
Sbjct: 288 ----------------------DSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQ 325

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G +IH +I +     ++ + ++L+D+Y KCGNI  A  VF  MP+ N +++  +I G  
Sbjct: 326 LGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYV 385

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             G  L+A+  F++M   G+ PD ITF  +L AC    ++++G++        F +  KL
Sbjct: 386 KVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHN-----FIIESKL 440

Query: 450 K----HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
           +        ++D+  + G ++EA  +   +P   D V W ++  A   HG        A+
Sbjct: 441 EINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAF----EAL 495

Query: 506 KLLE 509
           KL E
Sbjct: 496 KLFE 499


>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 299/480 (62%), Gaps = 1/480 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC-GDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +I  H++K G        + V+    S  GD+  A  +F      NL  WN++I GF RS
Sbjct: 43  KIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRS 102

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
             P  AI LF DM    V P  +T   +  A AQL     G ++H  + + GL     + 
Sbjct: 103 STPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQ 162

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N ++ MY   G L  A  +FD +V+  VV+C +MI+G AK G +D +R++FD++P +  V
Sbjct: 163 NTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRV 222

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN++I GYV+ KR  EAL LF +MQ   ++P   T V  LSAC+ LGAL  G W+H ++
Sbjct: 223 TWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYV 282

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
           ++ +F LNV++ TA++DMY KCG I KA++VF   P R    + +II GLAL+G    AI
Sbjct: 283 KRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAI 342

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
            YFS++    L PD ++F+G+L+AC + G V + R YF+ M + + + P +KHY+CMV++
Sbjct: 343 EYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEV 402

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LG++ LLEEAEQLI+ MP+ AD ++WG+L  +CR HGNV I +RAA ++ EL+P D+  Y
Sbjct: 403 LGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGY 462

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +L++N+   SN +EEA + R +M ER  EK PGCSSIE+ G ++EF+   + HP+  +IY
Sbjct: 463 LLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIELYGEVHEFLAGGRLHPKAREIY 522



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 201/422 (47%), Gaps = 66/422 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL  H  A SR++ FCA S S +++Y   +   + +PN + WN  IRGF  +     A+
Sbjct: 51  TGLAHHTVAASRVLTFCA-SSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAI 109

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  ML      P   TYP +FK  A LG  + G ++ G V+KLG + D ++ N +I++
Sbjct: 110 SLFVDML-CSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYM 168

Query: 124 FVSCGDLGLACNVFDE-------SC------------------------VRNLVSWNSLI 152
           + + G L  A  VFDE       +C                         R  V+WNS+I
Sbjct: 169 YANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMI 228

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+VR+    EA+ LFR MQ ERVEP E TM+ ++SACA L  L  G  +H Y+      
Sbjct: 229 SGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFE 288

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L V +  A++DMY KCG +  A E+F++                                
Sbjct: 289 LNVIVLTAIIDMYCKCGVIVKAIEVFEAS------------------------------- 317

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           P + +  WN+II G       ++A+  F +++A+ +KPD V+ +  L+AC  +GA+    
Sbjct: 318 PTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKAR 377

Query: 333 -WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            +    + K     ++   T +V++  +   + +A Q+   MP + + + + +++     
Sbjct: 378 DYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRK 437

Query: 391 HG 392
           HG
Sbjct: 438 HG 439



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           +++   +D   ++  N+      +WN  I G++   ++ EA++L+++M +     P  FT
Sbjct: 200 LAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKM-QGERVEPSEFT 258

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              L   CA LG    G  +  +V +  F++++ V  A+I ++  CG +  A  VF+ S 
Sbjct: 259 MVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASP 318

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            R L  WNS+I G   +G+ R+AI  F  ++   ++PD V+ IG+++AC  +  +   R+
Sbjct: 319 TRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARD 378

Query: 202 -IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT-VVSCTTMIVGYAKF 259
                +++  +  ++     ++++  +   LE AE++   M  K   +   +++    K 
Sbjct: 379 YFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKH 438

Query: 260 GFLDIARK 267
           G ++IA++
Sbjct: 439 GNVEIAKR 446


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 321/561 (57%), Gaps = 6/561 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +I   ++  N  SW   I+   +  K+ EA +LY++ML+  G  P+  T+  L   C + 
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ-AGISPNAVTFVSLLNSCNTP 293

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  I  H+ + G + D+ V NA+I ++  C  +  A   FD    R+++SW+++I
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMI 353

Query: 153 NGFVRSGFPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
            G+ +SG+       E  +L   M+ E V P++VT + ++ AC+    L  GR+IH  IS
Sbjct: 354 AGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS 413

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G      L  A+ +MY KCG +  AE++F  M NK VV+  +++  Y K G L  A K
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F ++  + VV WN +I GY Q+    +   L   M+  G +PD VT +  L AC  L A
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  +H    K     + V+ T+L+ MY+KCG + +A  VF ++  R+++ + A++ G
Sbjct: 534 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAG 593

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
              HG   +A+  F  M+   + P+EITF  ++SAC   GLV EGR+ F  M   FR+ P
Sbjct: 594 YGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKP 653

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HY CMVDLLGR+G L+EAE+ I+ MP   D+ VW AL  AC+ H NV + E AA  +
Sbjct: 654 GKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHI 713

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           L L+P ++ +YV L+N+Y  +  W+++ KVRK+M+++G++K  G SSIE++G ++ F+  
Sbjct: 714 LRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAE 773

Query: 568 DKSHPELEQIYDCLVQLTRHF 588
           D +HPE++ I+  L  LT+  
Sbjct: 774 DCAHPEIDSIHAELEMLTKEM 794



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 225/454 (49%), Gaps = 42/454 (9%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P S S     R   + G+++EA+ L   +++  G   ++ TY  + + CA L     G  
Sbjct: 42  PRSVSGGEVWR-LCKAGRLKEAIQLLG-IIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKM 99

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           +   + +LG  +D+Y+ N++I+ +   GD+     VF    +R++V+W+S+I  +  +  
Sbjct: 100 VHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNH 159

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           P +A   F  M+   +EP+ +T + ++ AC     L   REIH  +  SG+   V +A A
Sbjct: 160 PAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATA 219

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ MY KCG++  A EIF  M  + VVS                               W
Sbjct: 220 LITMYSKCGEISLACEIFQKMKERNVVS-------------------------------W 248

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            AII    Q ++  EA  L+ +M   GI P+AVT V  L++C+   AL+ G  IH  I +
Sbjct: 249 TAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG----KALD 396
                +VV+  AL+ MY KC  I  A + F  M +R+ ++++A+I G A  G    ++LD
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368

Query: 397 AI-SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSC 454
            +      M   G+ P+++TF+ IL AC   G +++GR+  A++S + F     L+  + 
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQ--TA 426

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           + ++  + G + EAEQ+   M    +VV W +L 
Sbjct: 427 IFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLL 459



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 215/482 (44%), Gaps = 60/482 (12%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +W+  I  +       +A D +++M ++    P+  T+  + K C +  +     EI   
Sbjct: 146 TWSSMIAAYAGNNHPAKAFDTFERM-KDANIEPNRITFLSILKACNNYSMLEKAREIHTV 204

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V   G + D+ V  A+I ++  CG++ LAC +F +   RN+VSW ++I    +     EA
Sbjct: 205 VKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEA 264

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
             L+  M    + P+ VT + ++++C   E LN GR IH +ISE GL   V +ANAL+ M
Sbjct: 265 FELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITM 324

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KC  ++ A E FD M  + V+S + MI GYA+ G+ D  ++  D              
Sbjct: 325 YCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQD--KESLD-------------- 368

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                     E   L   M+  G+ P+ VT +  L ACS  GAL+ G  IH  I K  F 
Sbjct: 369 ----------EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418

Query: 345 LNVVLGTALVDMYAKCGNIAKALQ-------------------------------VFHEM 373
            +  L TA+ +MYAKCG+I +A Q                               VF EM
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEM 478

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             RN +++  +I G A  G         S M   G  PD +T + IL AC     ++ G+
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGK 538

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
              A+   +   S  +   S ++ +  + G + EA  +   +    D V W A+      
Sbjct: 539 LVHAEAVKLGLESDTVVATS-LIGMYSKCGEVTEARTVFDKIS-NRDTVAWNAMLAGYGQ 596

Query: 494 HG 495
           HG
Sbjct: 597 HG 598


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/487 (39%), Positives = 300/487 (61%), Gaps = 2/487 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVS--CGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           +I G +LK G  +D    + ++    S   G L  A  VFD     N   WN++I G+  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S  P EA+ L+  M    V  +  T   ++ AC+ +  L   ++IH +I + G    +  
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYT 155

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N+L+++Y K G ++SA  +FD +  +  VS  +MI GY K G +++A +IF+ +PE+ +
Sbjct: 156 TNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W ++I G V A + KEAL LFH MQ  GIK D V  V  L AC+ LG LD G WIH +
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+K    ++ +LG  L+DMYAKCG++ +A++VF +M E+    +TA+I G A+HG+  +A
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           + +F +M   G+ P+++TF GIL+AC H GLV E +  F  M  I    P ++HY CMVD
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+GLL+EAE+LI +MP+  +  +WGAL  AC +HGN+ +G++    L+++DP   G 
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGR 455

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y+ LA+++  +  W +A +VR+ M+E+GV K PGCS I VNG  +EF+  D+SHP++++I
Sbjct: 456 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEI 515

Query: 578 YDCLVQL 584
              L Q+
Sbjct: 516 DHMLEQI 522



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 204/426 (47%), Gaps = 67/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLI      S+L+AFCA   S +L Y   +   +  PN+F WN  IRG+  + +  
Sbjct: 41  MLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPE 100

Query: 61  EAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           EA+ LY  ML +  + P N +T+P L K C+S+       +I  H++K+GF  ++Y  N+
Sbjct: 101 EALLLYHHMLYH--SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNS 158

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR---------------------- 157
           +++V+   GD+  A  +FD+   R+ VSWNS+I+G+ +                      
Sbjct: 159 LLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISW 218

Query: 158 ---------SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                    +G P+EA+ LF  MQ   ++ D V ++  + ACA L  L+ G+ IH YI +
Sbjct: 219 TSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK 278

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             + +   L   L+DMY KCG LE A E+F  M  K V   T MI GYA  G        
Sbjct: 279 HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG-------- 330

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  R +EAL  F +MQ  G++P+ +T    L+ACS  G +
Sbjct: 331 -----------------------RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLV 367

Query: 329 DDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIG 386
            +   +   +E+   F  ++     +VD+  + G + +A ++   MP + N+  + A++ 
Sbjct: 368 HEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLN 427

Query: 387 GLALHG 392
              +HG
Sbjct: 428 ACHIHG 433


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/492 (41%), Positives = 308/492 (62%), Gaps = 3/492 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC--GDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           +I  H+LK G        + V+    +   GD+  A  VF +    NL SWN++I GF +
Sbjct: 42  KIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFSQ 101

Query: 158 SGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           S  P  AI LF DM +   V+P  +T   +  A AQL   + G ++H  + + GL     
Sbjct: 102 SSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPF 161

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N ++ MY  CG L    + F   ++  +V+  +MI+G AK G +D +RK+FD++P + 
Sbjct: 162 IRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRN 221

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V WN++I GYV+  R +EAL LF +MQ   IKP   T V  L+A ++LGAL  G WIH 
Sbjct: 222 TVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHD 281

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +I K NF LNV++  +++DMY KCG+I +A QVF   P +   ++  +I GLA++G   +
Sbjct: 282 YIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENE 341

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           AI  FS +    L PD++TF+G+L+AC + GLVD+ ++YF+ MS  +++ P +KHYSCMV
Sbjct: 342 AIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMV 401

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           D LGR+GLLEEAE+LIR+MP+  D ++W +L  ACR HGNV + +RAA  +++LD  DS 
Sbjct: 402 DTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSC 461

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            YVLL+N+Y  S+ +EEA + R  M+E+ +EK PGCS IEVNG ++EF+   + HP+ ++
Sbjct: 462 GYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLHPQAQE 521

Query: 577 IYDCLVQLTRHF 588
           +Y  L +L   F
Sbjct: 522 VYSLLNELGMMF 533



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 207/422 (49%), Gaps = 64/422 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL  H  A S ++AFCA S   +++Y   +   + +PN FSWN  IRGF ++     A+
Sbjct: 50  TGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAI 109

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  ML     +P   TYP +FK  A LGL   G ++ G V+KLG   D ++ N +I++
Sbjct: 110 SLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYM 169

Query: 124 FVSCGDL-----------------------GLA-C-------NVFDESCVRNLVSWNSLI 152
           + +CG L                       GLA C        +FDE  +RN VSWNS+I
Sbjct: 170 YANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMI 229

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+VR+G  REA+ LF  MQ ER++P E TM+ +++A A+L  L  G  IH YI ++   
Sbjct: 230 SGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFE 289

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L V +  +++DMY KCG +  A ++F+    K + S  TMI+G A  G            
Sbjct: 290 LNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGC----------- 338

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EA+ LF  ++ + ++PD VT V  L+AC+  G +D   
Sbjct: 339 --------------------ENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAK 378

Query: 333 WIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
                + K      ++   + +VD   + G + +A ++   MP   +++ +++++     
Sbjct: 379 EYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRK 438

Query: 391 HG 392
           HG
Sbjct: 439 HG 440


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 340/592 (57%), Gaps = 39/592 (6%)

Query: 35  LFNVQNPNSFSWNVAIRGFLETGKMREAVD----LYKQMLRNGGTRPDNFTYPLLFKVCA 90
           LF+    ++F ++ A+R     G      D    L+++M R    RPD FT+  LFK  +
Sbjct: 59  LFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRM-RRAAVRPDGFTFHFLFKCSS 117

Query: 91  SLGLR-FLGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDE--------- 139
           S   R  L   +    L+        +V N++IH++   G  G     FDE         
Sbjct: 118 SSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSW 177

Query: 140 ----------------------SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
                                 + VR+++SW SLI  + R+   +EA+  F++M  E + 
Sbjct: 178 TMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIA 237

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD+VT+IG++SAC+QL+DL LG  +H  + E G++++  L  AL+DMY KCG    A E+
Sbjct: 238 PDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREV 297

Query: 238 FDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           FD++   +   S   +I GY K G +D+AR +FD +  + ++ +N++I GY+ + + +EA
Sbjct: 298 FDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREA 357

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L LF  M+   ++ D  T V  LSAC+ LGAL  G  +H  IE      ++ +GTAL+DM
Sbjct: 358 LLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDM 417

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCG + +A  VF  M +R+   +TA+I GLA +G     + YF +M   G  P+ +++
Sbjct: 418 YMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSY 477

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + +L+AC H  L++EGR YF +M  ++ + P+++HY CM+DLLGRSGLL+EA  L+++MP
Sbjct: 478 IAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 537

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           M  + V+W ++  ACR+H  + + + AA  LL+++P +  +YV L N+  DS  WE+A K
Sbjct: 538 MQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASK 597

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +R +MEER V+KT G SS+ V G +++F+V DKSHP + +I   L +++   
Sbjct: 598 IRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRL 649



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 244/526 (46%), Gaps = 46/526 (8%)

Query: 42   NSFSWNVAIRGFLETGKMREAV----DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF- 96
            N+   NV +RG        E +    D+ +Q L   G      +Y    K C   G    
Sbjct: 858  NTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNG-----LSYCYAMKGCYQNGEWLE 912

Query: 97   LGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
             G ++ G VLK G+   ++++ N+++ ++ + GD        ++    +++SWNS+++ +
Sbjct: 913  QGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMY 972

Query: 156  VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL-T 214
               G  +EA+   + M      P   + + +++   +  D  LG +IH  + + G +  +
Sbjct: 973  ADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSS 1032

Query: 215  VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
            V +   L+DMY KC   + +  IF+ + +  +  C ++I    +    D           
Sbjct: 1033 VHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFD----------- 1081

Query: 275  KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG--ALDDGI 332
                                 AL + H M   G+ PD VT    + A S     +L    
Sbjct: 1082 --------------------AALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQ 1121

Query: 333  WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             +H  + K  F +++ + ++L+  YA  G ++ +  +F  + + N + +TAII   A +G
Sbjct: 1122 MLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYG 1181

Query: 393  KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
                A+  F +M+  GL PD +TFL  ++ C   G+ +EGR     M +   L P  +H+
Sbjct: 1182 DGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHF 1241

Query: 453  SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
            +CMV+LL R G ++EA +++   P+      W +L  +C+ HG   +G+RAA  L+++  
Sbjct: 1242 ACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGR 1301

Query: 513  QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
            +D    + ++N + D    E A ++++M   + V+K+ G S IEV+
Sbjct: 1302 KDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1346



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 173/381 (45%), Gaps = 37/381 (9%)

Query: 33   KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
            K L ++ + +  SWN  +  + + G M+EAV   KQML +G   P   ++  L  +    
Sbjct: 952  KALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKM-PSIRSFVSLLALSGKT 1010

Query: 93   GLRFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
            G   LG +I G V KLGF    ++V   +I ++  C     +  +F+E     L   NSL
Sbjct: 1011 GDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSL 1070

Query: 152  INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC--AQLEDLNLGREIHWYISES 209
            I   +R      A+ +   M +E V PD+VT    + A   +    L   + +H  + + 
Sbjct: 1071 ITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKL 1130

Query: 210  GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            G  + + + ++L+  Y   G+L S+  IF+ +++  V+  T +I   A++G  D AR   
Sbjct: 1131 GFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYG--DGAR--- 1185

Query: 270  DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                      A+ LF +M ++G+KPD VT +  ++ C Q G  +
Sbjct: 1186 --------------------------AMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFE 1219

Query: 330  DG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGG 387
            +G + I         + +      +V++ ++ G + +A+++  + P R+ +  +++++  
Sbjct: 1220 EGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQS 1279

Query: 388  LALHGKALDAISYFSEMIGVG 408
               HG+ +      + +I VG
Sbjct: 1280 CKAHGENVLGKRAANMLIDVG 1300



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 169/382 (44%), Gaps = 41/382 (10%)

Query: 45   SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
            S N  I GF+  G    A  +Y+ M+ +G  R    T+  +  VC++    +   ++ G 
Sbjct: 764  SLNRMITGFIRDGLADRARAVYRWMVASG-IRETPHTFSTILGVCST----YEALQLHGR 818

Query: 105  VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            VL LG   + +V +A+++ ++       + ++F E  ++N    N ++ G        E 
Sbjct: 819  VLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEEL 878

Query: 165  IRLFRDMQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESG-LTLTVPLANALM 222
            I  F DM+ + +E + ++    +  C Q  E L  GR++H  + ++G +   + L+N+L+
Sbjct: 879  ICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLV 938

Query: 223  DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            D+Y   G  +S + +                             K  +D+  + V+ WN+
Sbjct: 939  DLYSAIG--DSVDTV-----------------------------KALNDILSEDVISWNS 967

Query: 283  IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
            I+  Y      KEA+    +M   G  P   + V  L+   + G    G+ IH  + K  
Sbjct: 968  ILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLG 1027

Query: 343  FNLNVV-LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD-AISY 400
            F+ + V + T L+DMY KC     +L +F+E+P        ++I   +L     D A+  
Sbjct: 1028 FSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS-SLRCNMFDAALEI 1086

Query: 401  FSEMIGVGLMPDEITFLGILSA 422
               MI  G+ PD++TF   + A
Sbjct: 1087 LHCMIVEGVTPDDVTFSATMKA 1108



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    +   ++  +  ++N  I G++ +G++REA+ L+  M R+   R DNFT   L 
Sbjct: 322 HVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD-LRVDNFTVVSLL 380

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASLG    G  +   +     + D+Y+  A++ +++ CG +  A  VF     R++ 
Sbjct: 381 SACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVH 440

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR------ 200
           +W ++I G   +G  +  +  F  M+ +  +P+ V+ I +++AC+    LN GR      
Sbjct: 441 AWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEM 500

Query: 201 ----EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                IH  I   G          ++D+  + G L+ A ++  +M
Sbjct: 501 RILYNIHPQIEHYG---------CMIDLLGRSGLLDEAMDLVKTM 536



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 122/282 (43%), Gaps = 37/282 (13%)

Query: 142  VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            VR++ S N +I GF+R G    A  ++R M    +     T   ++  C+  E L L   
Sbjct: 759  VRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQL--- 815

Query: 202  IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
             H  +   GL     + +AL++ Y+    +ES                            
Sbjct: 816  -HGRVLALGLCCNPFVGSALVNHYM---HVESPHA------------------------- 846

Query: 262  LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
               +  +F +LP +     N ++ G    K ++E +  F +M+   ++ + ++  + +  
Sbjct: 847  ---SLSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKG 903

Query: 322  CSQLGA-LDDGIWIHRFIEKENF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
            C Q G  L+ G  +H  + K  +   N+ L  +LVD+Y+  G+    ++  +++   + +
Sbjct: 904  CYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVI 963

Query: 380  TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            ++ +I+   A  G   +A+ Y  +M+  G MP   +F+ +L+
Sbjct: 964  SWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLA 1005



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 13/291 (4%)

Query: 277  VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V   N +I G+++   +  A A++  M A+GI+    T    L  CS   AL     +H 
Sbjct: 762  VASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ----LHG 817

Query: 337  FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
             +       N  +G+ALV+ Y    +   +L +F E+P +N+     ++ GL       +
Sbjct: 818  RVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEE 877

Query: 397  AISYFSEMIGVGLMPDEITFLGILSACCHGG-LVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
             I  F +M    L  + +++   +  C   G  +++GR+    +     +   +   + +
Sbjct: 878  LICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSL 937

Query: 456  VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF--FACRLHGNVSIGERAAMKLLELDPQ 513
            VDL    G   +  + +  + ++ DV+ W ++   +A R H   ++     M      P 
Sbjct: 938  VDLYSAIGDSVDTVKALNDI-LSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPS 996

Query: 514  DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
                  LLA +   +  W+   ++  ++ + G      CSS+ V   L + 
Sbjct: 997  IRSFVSLLA-LSGKTGDWQLGVQIHGIVHKLGF----SCSSVHVQTTLIDM 1042


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 317/542 (58%), Gaps = 44/542 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY-- 99
           +SF  N+ I G+        A+ +Y+ ++ NG   PD +T P + K CA    RF G   
Sbjct: 148 SSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFV-PDVYTVPAVLKSCA----RFSGIAE 202

Query: 100 --EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
             +I    +K     DM+V N+ +HV+  CGD   A  VFD   VR++VSW  LI+G+++
Sbjct: 203 VKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMK 262

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +G   +A+ LF  M    V P+  T + ++ AC +L  LNLG+ IH  +S+      + +
Sbjct: 263 AGLFNDAVALFLRMD---VAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVV 319

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           +N LMDMYVKC      E + D                         A+++FD++PEK +
Sbjct: 320 SNTLMDMYVKC------ESVTD-------------------------AKRLFDEIPEKDI 348

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V W ++I G VQ +  +E+L LF+EM  +G +PD V     LSAC+ LG LD G W+H +
Sbjct: 349 VSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEY 408

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+      +V +GT+L+DMYAKCG I  A Q+F+ +P +N  T+ A IGGLA++G   +A
Sbjct: 409 IDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEA 468

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS-IFRLSPKLKHYSCMV 456
           +  F  ++  G  P+EITFL + SACCH GLVDEGR YF QM+S  + LSP L+HY CMV
Sbjct: 469 LKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMV 528

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           DLL R+ L+EEA +LI  MPM  DV + GAL  A   +GNV +       +   + Q+SG
Sbjct: 529 DLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQESG 588

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
           +YVLL+N Y ++  W E   VR++M+E+G+ K PG S I V+G  ++F+V D +HP+ E 
Sbjct: 589 VYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRVDGKSHKFVVGDNNHPQSED 648

Query: 577 IY 578
           I+
Sbjct: 649 IH 650



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 15/275 (5%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF---GFLDIAR-----KIFDDL 272
           L+D   +C  L S ++I   ++  T+V    ++   A F      DI       K FD  
Sbjct: 87  LLDFIQRCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWS 146

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
              +  P N II GY        A+ ++  +   G  PD  T    L +C++   + +  
Sbjct: 147 FSSF--PCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVK 204

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH    K +   ++ +  + V +Y+ CG+   A +VF  MP R+ +++T +I G    G
Sbjct: 205 QIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAG 264

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              DA++ F  M    + P+  TF+ IL AC   G ++ G+     +S  +    +L   
Sbjct: 265 LFNDAVALFLRM---DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSK-YPHGKELVVS 320

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + ++D+  +   + +A++L   +P   D+V W ++
Sbjct: 321 NTLMDMYVKCESVTDAKRLFDEIP-EKDIVSWTSM 354


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 318/554 (57%), Gaps = 36/554 (6%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y  K L ++QN  + SWN  +R        +EA++LY QML +G + P+ FT+P  FK C
Sbjct: 10  YANKWL-DLQNTTA-SWNARLRELARQRHFQEALNLYCQMLASGDS-PNAFTFPFAFKSC 66

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VRNL-VS 147
           ASL L   G ++ GHV+K G + + +V  ++I ++  C  +  A  VFDE+   RNL V 
Sbjct: 67  ASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVC 126

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           +N+LI G+  +    +A+ LFR M+ E V  + VTM+G++  CA    L  G  +H    
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV 186

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
             GL   + + N L+ MYV+CG +                               D ARK
Sbjct: 187 RFGLDGDLSVGNCLLTMYVRCGSV-------------------------------DFARK 215

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD +PEK ++ WNA+I GY Q   +   L L+ +M+ TGI PD VT V  LS+C+ LGA
Sbjct: 216 LFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGA 275

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
              G  + + IE   F  N  L  AL++MYA+CGN+ KA  +F  M E+N +++TAII G
Sbjct: 276 HAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAG 335

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
             +HG+   A+  F EMI    +PD   F+ +LSAC H GL ++G  YF  M   + L P
Sbjct: 336 YGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQP 395

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HYSC+VDLLGR+G LEEA +LI SM +  D  VWGAL  AC++H NV + E A  K+
Sbjct: 396 GPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKV 455

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           +E +P + G YVLL+N++ ++   E   +VR MM ER ++K PGCS +E  G ++ F+  
Sbjct: 456 IEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAG 515

Query: 568 DKSHPELEQIYDCL 581
           D++HP+ ++IY  L
Sbjct: 516 DRTHPQAQEIYHML 529



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D+  K+   +      +WN  I G+ + G     +DLY++M    G  PD  T   + 
Sbjct: 209 SVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKM-EFTGIVPDPVTLVGVL 267

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG    G E+   +   GF  + ++ NA+I+++  CG+L  A  +FD    +N++
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVI 327

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW ++I G+   G    A++LF +M      PD    + ++SAC+       G  ++++ 
Sbjct: 328 SWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKG--LYYFT 385

Query: 207 S---ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +   + GL       + ++D+  + G+LE A ++  SM
Sbjct: 386 AMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSM 423


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 326/565 (57%), Gaps = 34/565 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           E   ++Y   +   +   +  SW+  IR      +   A++L ++M      RP      
Sbjct: 141 ECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM-NFMQVRPSEVAMV 199

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV--HNAVIHVFVSCGDLGLACNVFDESC 141
            +  + A      +G  +  +V++   +  M V    A++ ++  CG LGLA  +F+   
Sbjct: 200 SMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT 259

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            + +VSW ++I G +RS    E  +LF  MQ E + P+E+TM+ ++  C     L LG++
Sbjct: 260 QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ 319

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H YI  +G ++++ LA AL+DMY KC  + +A                           
Sbjct: 320 LHAYILRNGFSVSLALATALVDMYGKCSDIRNA--------------------------- 352

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
               R +FD    + V+ W A++  Y QA    +A  LF +M+ +G++P  VT V  LS 
Sbjct: 353 ----RALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 408

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+  GALD G W+H +I+KE   ++ +L TALVDMYAKCG+I  A ++F E   R+   +
Sbjct: 409 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 468

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            AII G A+HG   +A+  F+EM   G+ P++ITF+G+L AC H GLV EG+K F +M  
Sbjct: 469 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 528

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            F L P+++HY CMVDLLGR+GLL+EA ++I+SMP+  + +VWGAL  ACRLH N  +GE
Sbjct: 529 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 588

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
            AA +LLE++P++ G  VL++N+Y  +N W +A  VRK M+  G++K PG S IEVNG +
Sbjct: 589 LAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 648

Query: 562 YEFIVRDKSHPELEQIYDCLVQLTR 586
           +EF++ D+SHP++ +I + L ++ R
Sbjct: 649 HEFLMGDQSHPQIRRINEMLAEMRR 673



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 211/437 (48%), Gaps = 38/437 (8%)

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           NF  P + K C  +    LG EI G VLK G D D++V NA++ ++  C  +  A  VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           +   R++VSW+++I    R+     A+ L R+M   +V P EV M+ MV+  A   ++ +
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 199 GREIHWYI--SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           G+ +H Y+  + +   + VP   AL+DMY KCG L  A ++F+ +  KTVVS T MI G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG- 272

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
                                          +++ R +E   LF  MQ   I P+ +T +
Sbjct: 273 ------------------------------CIRSNRLEEGTKLFIRMQEENIFPNEITML 302

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             +  C   GAL  G  +H +I +  F++++ L TALVDMY KC +I  A  +F     R
Sbjct: 303 SLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNR 362

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + + +TA++   A       A + F +M   G+ P ++T + +LS C   G +D G K+ 
Sbjct: 363 DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWV 421

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
                  R+       + +VD+  + G +  A +L     ++ D+ +W A+     +HG 
Sbjct: 422 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHG- 479

Query: 497 VSIGERAAMKLLELDPQ 513
              GE A     E++ Q
Sbjct: 480 --YGEEALDIFAEMERQ 494


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/487 (39%), Positives = 299/487 (61%), Gaps = 2/487 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVS--CGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           +I G +LK G  +D    + ++    S   G L  A  VFD     N   WN++I G+  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S  P EA+ L+  M    V  +  T   ++ AC+ +      ++IH +I + G    +  
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYT 155

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N+L+++Y K G ++SA  +FD +  +  VS  +MI GY K G +++A +IF+ +PE+ +
Sbjct: 156 TNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W ++I G V A + KEAL LFH MQ  GIK D V  V  L AC+ LG LD G WIH +
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+K    ++ +LG  L+DMYAKCG++ +A++VF +M E+    +TA+I G A+HG+  +A
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           + +F +M   G+ P+++TF GIL+AC H GLV E +  F  M  I    P ++HY CMVD
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+GLL+EAE+LI +MP+  +  +WGAL  AC +HGN+ +G++    L+++DP   G 
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGR 455

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y+ LA+++  +  W +A +VR+ M+E+GV K PGCS I VNG  +EF+  D+SHP++++I
Sbjct: 456 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEI 515

Query: 578 YDCLVQL 584
              L Q+
Sbjct: 516 DHMLEQI 522



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 204/426 (47%), Gaps = 67/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLI      S+L+AFCA   S +L Y   +   +  PN+F WN  IRG+  + +  
Sbjct: 41  MLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPE 100

Query: 61  EAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           EA+ LY  ML +  + P N +T+P L K C+S+       +I  H++K+GF  ++Y  N+
Sbjct: 101 EALLLYHHMLYH--SVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNS 158

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR---------------------- 157
           +++V+   GD+  A  +FD+   R+ VSWNS+I+G+ +                      
Sbjct: 159 LLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISW 218

Query: 158 ---------SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                    +G P+EA+ LF  MQ   ++ D V ++  + ACA L  L+ G+ IH YI +
Sbjct: 219 TSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK 278

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             + +   L   L+DMY KCG LE A E+F  M  K V   T MI GYA  G        
Sbjct: 279 HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG-------- 330

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  R +EAL  F +MQ  G++P+ +T    L+ACS  G +
Sbjct: 331 -----------------------RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLV 367

Query: 329 DDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIG 386
            +   +   +E+   F  ++     +VD+  + G + +A ++   MP + N+  + A++ 
Sbjct: 368 HEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLN 427

Query: 387 GLALHG 392
              +HG
Sbjct: 428 ACHIHG 433


>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
          Length = 529

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 310/514 (60%), Gaps = 4/514 (0%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           NV IR     G     + +Y   LR  G   D++TYP + +   ++ L   G ++    +
Sbjct: 15  NVLIRTLARRGSFSRVMAVYYD-LRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAV 73

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           K GF  D Y   +++ ++   G    A  VFDE   R LV WN ++  ++R G    A+ 
Sbjct: 74  KTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVA 133

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L   M+     PD VT++  V+AC++  DLNLGR IH Y+ +     ++P+ANAL+DMY 
Sbjct: 134 LAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYM-DGVFGFSLPVANALLDMYT 192

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K G LE A ++F+ M  + ++S T ++ GY   G LD AR  F    +K ++ W ++I  
Sbjct: 193 KNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINA 252

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            VQ    +EAL LF +MQ   ++PD  T V  L+ C+ +GALD G WIH++ E  N  ++
Sbjct: 253 CVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKID 312

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            VLGTAL++MY+KCG++ K+LQ+F  M  +++  +TAII GLA +G+A  A+  F EM  
Sbjct: 313 AVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQR 372

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
               PD ITF+G+LSACCHGGLVDEG++YF  M  ++ + P+++HYSC+V+LLG +GLL 
Sbjct: 373 SKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLY 432

Query: 467 EAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELD-PQDSGIYVLLANM 524
           EAE+LI  MP+  D + ++GAL  AC+ +GNV + E    ++ + D   +  + VL++N+
Sbjct: 433 EAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCSPNPDVNVLMSNV 492

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           Y  ++ WEEA +VR  M    V+KT GCS IEV 
Sbjct: 493 YATASRWEEAIRVRSKMTNPAVKKTAGCSMIEVK 526



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 167/367 (45%), Gaps = 71/367 (19%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN+ +R ++  G+   AV L  QM  +GG  PD  T       C+  G   LG  I  ++
Sbjct: 115 WNMMMRCYIRCGRFTAAVALAVQM-ESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYM 173

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS------------------ 147
             + F   + V NA++ ++   G L  A  +F++   RN++S                  
Sbjct: 174 DGV-FGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKAR 232

Query: 148 -------------WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
                        W S+IN  V+ G   EA+ LFRDMQL+RVEPD+ T++ +++ CA + 
Sbjct: 233 VFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIG 292

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L+ G  IH Y     + +   L  AL++MY KCG ++ + +IF  M  K   + T +I 
Sbjct: 293 ALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIIC 352

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G A  G                               ++ +AL LF EMQ +  KPD +T
Sbjct: 353 GLATNG-------------------------------QASKALELFEEMQRSKTKPDGIT 381

Query: 315 TVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLG--TALVDMYAKCGNIAKALQVF 370
            +  LSAC   G +D+G    R+ +  KE +++   +   + LV++    G + +A ++ 
Sbjct: 382 FIGVLSACCHGGLVDEG---QRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLI 438

Query: 371 HEMPERN 377
            +MP  N
Sbjct: 439 TDMPVNN 445


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 337/585 (57%), Gaps = 39/585 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVD----LYKQMLRNGGTRPDNFTYPLLFKVCASLGLR-F 96
           ++F ++ A+R     G      D    L+++M R    RPD FT+  LFK  +S   R  
Sbjct: 4   STFLFDTALRACFRAGTSSGDPDIPFVLFRRM-RRAAVRPDGFTFHFLFKCSSSSRPRAL 62

Query: 97  LGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDE---------------- 139
           L   +    L+        +V N++IH++   G  G     FDE                
Sbjct: 63  LCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGL 122

Query: 140 ---------------SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
                          + VR+++SW SLI  + R+   +EA+  F++M  E + PD+VT+I
Sbjct: 123 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 182

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VN 243
           G++SAC+QL+DL LG  +H  + E G++++  L  AL+DMY KCG    A E+FD++   
Sbjct: 183 GVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRG 242

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +   S   +I GY K G +D+AR +FD +  + ++ +N++I GY+ + + +EAL LF  M
Sbjct: 243 RRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNM 302

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +   ++ D  T V  LSAC+ LGAL  G  +H  IE      ++ +GTAL+DMY KCG +
Sbjct: 303 RRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 362

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A  VF  M +R+   +TA+I GLA +G     + YF +M   G  P+ ++++ +L+AC
Sbjct: 363 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTAC 422

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H  L++EGR YF +M  ++ + P+++HY CM+DLLGRSGLL+EA  L+++MPM  + V+
Sbjct: 423 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVI 482

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W ++  ACR+H  + + + AA  LL+++P +  +YV L N+  DS  WE+A K+R +MEE
Sbjct: 483 WASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEE 542

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           R V+KT G SS+ V G +++F+V DKSHP + +I   L +++   
Sbjct: 543 RQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRL 587



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 246/526 (46%), Gaps = 46/526 (8%)

Query: 42   NSFSWNVAIRGFLETGKMREAV----DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF- 96
            N+   NV +RG        E +    D+ +Q L   G      +Y    K C   G    
Sbjct: 796  NTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNG-----LSYCYAMKGCYQNGEWLE 850

Query: 97   LGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
             G ++ G VLK G+   ++++ N+++ ++ + GD        ++    +++SWNS+++ +
Sbjct: 851  QGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMY 910

Query: 156  VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL-T 214
               G  +EA+   + M      P   + + +++   +  D  LG +IH  + + G +  +
Sbjct: 911  ADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSS 970

Query: 215  VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
            V +   L+DMY KC   + +  IF+ + +  +  C ++I          +   +FD    
Sbjct: 971  VHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS-------SLGCNMFD---- 1019

Query: 275  KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG--ALDDGI 332
                                 AL + H M   G+ PD VT    + A S     +L    
Sbjct: 1020 --------------------AALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQ 1059

Query: 333  WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             +H  + K  F +++ + ++L+  YA  G ++ +  +F  + + N + +TAII   A +G
Sbjct: 1060 MLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYG 1119

Query: 393  KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
                A+  F +M+  GL PD +TFL  ++ C   G+ +EGR     M +   L P  +H+
Sbjct: 1120 DGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHF 1179

Query: 453  SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
            +CMV+LL R G ++EA +++   P+      W +L  +C+ HG   +G+RAA  L+++  
Sbjct: 1180 ACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGR 1239

Query: 513  QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
            +D    + ++N + D    E A ++++M   + V+K+ G S IEV+
Sbjct: 1240 KDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1284



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 173/386 (44%), Gaps = 49/386 (12%)

Query: 45   SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
            S N  I GF+  G    A  +Y+ M+ +G  R    T+  +  VC++    +   ++ G 
Sbjct: 702  SLNRMITGFIRDGLADRARAVYRWMVASG-IRETPHTFSTILGVCST----YEALQLHGR 756

Query: 105  VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            VL LG   + +V +A+++ ++       A ++F E  ++N    N ++ G        E 
Sbjct: 757  VLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEEL 816

Query: 165  IRLFRDMQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESG-LTLTVPLANALM 222
            I  F DM+ + +E + ++    +  C Q  E L  GR++H  + ++G +   + L+N+L+
Sbjct: 817  ICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLV 876

Query: 223  DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            D+Y   G  +S + +                             K  +D+  + V+ WN+
Sbjct: 877  DLYSAIG--DSVDTV-----------------------------KALNDILSEDVISWNS 905

Query: 283  IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
            I+  Y      KEA+    +M   G  P   + V  L+   + G    G+ IH  + K  
Sbjct: 906  ILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLG 965

Query: 343  FNLNVV-LGTALVDMYAKCGNIAKALQVFHEMPER-----NSLTYTAIIGGLALHGKALD 396
            F+ + V + T L+DMY KC     +L +F+E+P       NSL  +++  G  +   AL+
Sbjct: 966  FSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSL--GCNMFDAALE 1023

Query: 397  AISYFSEMIGVGLMPDEITFLGILSA 422
             +     MI  G+ PD++TF   + A
Sbjct: 1024 ILHC---MIVEGVTPDDVTFSATMKA 1046



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 172/381 (45%), Gaps = 37/381 (9%)

Query: 33   KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
            K L ++ + +  SWN  +  + + G M+EAV   KQML +G   P   ++  L  +    
Sbjct: 890  KALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKM-PSVRSFVSLLALSGKT 948

Query: 93   GLRFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
            G   LG +I G V KLGF    ++V   +I ++  C     +  +F+E     L   NSL
Sbjct: 949  GDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSL 1008

Query: 152  INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC--AQLEDLNLGREIHWYISES 209
            I   +       A+ +   M +E V PD+VT    + A   +    L   + +H  + + 
Sbjct: 1009 ITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKL 1068

Query: 210  GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            G  + + + ++L+  Y   G+L S+  IF+ +++  V+  T +I   A++G  D AR   
Sbjct: 1069 GFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYG--DGAR--- 1123

Query: 270  DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                      A+ LF +M ++G+KPD VT +  ++ C Q G  +
Sbjct: 1124 --------------------------AMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFE 1157

Query: 330  DG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGG 387
            +G + I         + +      +V++ ++ G + +A+++  + P R+ +  +++++  
Sbjct: 1158 EGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQS 1217

Query: 388  LALHGKALDAISYFSEMIGVG 408
               HG+ +      + +I VG
Sbjct: 1218 CKAHGENVLGKRAANMLIDVG 1238



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    +   ++  +  ++N  I G++ +G++REA+ L+  M R+   R DNFT   L 
Sbjct: 260 HVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD-LRVDNFTVVSLL 318

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASLG    G  +   +     + D+Y+  A++ +++ CG +  A  VF     R++ 
Sbjct: 319 SACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVH 378

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR------ 200
           +W ++I G   +G  +  +  F  M+ +  +P+ V+ I +++AC+    LN GR      
Sbjct: 379 AWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEM 438

Query: 201 ----EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                IH  I   G          ++D+  + G L+ A ++  +M
Sbjct: 439 RILYNIHPQIEHYG---------CMIDLLGRSGLLDEAMDLVKTM 474



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 122/282 (43%), Gaps = 37/282 (13%)

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           VR++ S N +I GF+R G    A  ++R M    +     T   ++  C+  E L L   
Sbjct: 697 VRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQL--- 753

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
            H  +   GL     + +AL++ Y+    +ES                            
Sbjct: 754 -HGRVLALGLCCNPFVGSALVNHYM---HVESPHA------------------------- 784

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
              A  +F +LP +     N ++ G    K ++E +  F +M+   ++ + ++  + +  
Sbjct: 785 ---ALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKG 841

Query: 322 CSQLGA-LDDGIWIHRFIEKENF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           C Q G  L+ G  +H  + K  +   N+ L  +LVD+Y+  G+    ++  +++   + +
Sbjct: 842 CYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVI 901

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++ +I+   A  G   +A+ Y  +M+  G MP   +F+ +L+
Sbjct: 902 SWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLA 943



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 120/291 (41%), Gaps = 13/291 (4%)

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           V   N +I G+++   +  A A++  M A+GI+    T    L  CS   AL     +H 
Sbjct: 700 VASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ----LHG 755

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            +       N  +G+ALV+ Y    +   AL +F E+P +N+     ++ GL       +
Sbjct: 756 RVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEE 815

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGG-LVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            I  F +M    L  + +++   +  C   G  +++GR+    +     +   +   + +
Sbjct: 816 LICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSL 875

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF--FACRLHGNVSIGERAAMKLLELDPQ 513
           VDL    G   +  + +  + ++ DV+ W ++   +A R H   ++     M      P 
Sbjct: 876 VDLYSAIGDSVDTVKALNDI-LSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPS 934

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
                 LLA +   +  W+   ++  ++ + G      CSS+ V   L + 
Sbjct: 935 VRSFVSLLA-LSGKTGDWQLGVQIHGIVHKLGF----SCSSVHVQTTLIDM 980


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/519 (40%), Positives = 299/519 (57%), Gaps = 41/519 (7%)

Query: 74  GTRPDNFTYPLLFKVCASLG--LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
           G RPD +T P   K CA LG  LR  G +      K GF   + V NA++  + +CG  G
Sbjct: 112 GARPDGYTLPAALKACARLGGGLRE-GCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCG 170

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
            A  VFDE   R++VSW +L++ F R G   EA+ +  +M    V P+EVT+  ++ AC 
Sbjct: 171 DARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACG 227

Query: 192 QLEDLNLGREIH-WYIS-ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            L     G+ +H WY   E  L L V   NAL+DMYVKC KL                  
Sbjct: 228 NLGTARAGKAVHGWYFRREKELNLIV--GNALLDMYVKCEKL------------------ 267

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                        D+AR++FD L  + +V W  +I G VQ KR  EAL +F+ MQ +G+K
Sbjct: 268 -------------DLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVK 314

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD V     LSAC+ LGAL+ G W+H +IE++    +V +GT++VDMY KCG +  A+ +
Sbjct: 315 PDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSI 374

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F EMP +N  ++ A+I G ALHG+  +A+  F  M+  GL P+E+TF+ +L ACCH GLV
Sbjct: 375 FQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLV 434

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            EGR+ F  M+  ++LSP   HY CMVDLLGR+GL++EA  +I++MPM   V  W  L  
Sbjct: 435 QEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLS 494

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           AC+ HG +   ++  M + EL+   +GIYVLL+NMY  S+ W + GK R  M E+G++K 
Sbjct: 495 ACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKE 554

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           PG S IEVNG   EF+V  ++H  ++ +   L  L +  
Sbjct: 555 PGSSVIEVNGKTCEFLVGQQNHLYMDDVRAMLSILMKQI 593



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 170/364 (46%), Gaps = 39/364 (10%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SW   +  F   G   EA+ +  +M       P+  T   +   C +L
Sbjct: 174 KVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM----DVTPNEVTLASVLVACGNL 229

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  + G   +   ++++ V NA++ ++V C  L LA  VFD    R++VSW  +I
Sbjct: 230 GTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMI 289

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G V+   P EA+ +F  MQ+  V+PD+V +  ++SACA L  L  GR +H YI   G+ 
Sbjct: 290 SGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIE 349

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +  +++DMYVKCG L++A  IF  M  K V S                        
Sbjct: 350 WDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSS------------------------ 385

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  WNA+I G+    R +EAL  F  M A+G+ P+ VT +  L AC   G + +G 
Sbjct: 386 -------WNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGR 438

Query: 333 WIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLA 389
            +   + K ++ L+        +VD+  + G I +A  V   MP R  + T+  ++    
Sbjct: 439 QLFELMTK-SYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQ 497

Query: 390 LHGK 393
            HG+
Sbjct: 498 AHGR 501



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 128/251 (50%), Gaps = 3/251 (1%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           + LD   ++   +   +  SW V I G ++  +  EA++++  M +  G +PD      +
Sbjct: 265 EKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAM-QISGVKPDKVVLSTV 323

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              CASLG    G  +  ++ + G + D++V  +V+ ++V CG L  A ++F E  ++N+
Sbjct: 324 LSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNV 383

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
            SWN+LINGF   G  REA+  F  M    + P+EVT I ++ AC     +  GR++   
Sbjct: 384 SSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFEL 443

Query: 206 ISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD 263
           +++S  L+        ++D+  + G ++ A ++  +M +   V +  T++      G +D
Sbjct: 444 MTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMD 503

Query: 264 IARKIFDDLPE 274
            +++I   + E
Sbjct: 504 FSQQILMHIHE 514



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 15/214 (7%)

Query: 279 PWNAIIGGYVQAKRSKEA-----LALFHEMQATGIKPDAVTTVHCLSACSQLGA-LDDGI 332
           P+NA+I     A     A     L L       G +PD  T    L AC++LG  L +G 
Sbjct: 79  PFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGC 138

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             H   EK  F   V +  ALV  Y  CG    A +VF EM ER+ +++TA++      G
Sbjct: 139 QAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGG 198

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
             ++A+   +EM    + P+E+T   +L AC + G    G+   A     FR   +L   
Sbjct: 199 MFMEALGVLAEM---DVTPNEVTLASVLVACGNLGTARAGK---AVHGWYFRREKELNLI 252

Query: 453 --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
             + ++D+  +   L+ A ++   M +A D+V W
Sbjct: 253 VGNALLDMYVKCEKLDLARRVF-DMLLARDIVSW 285


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 324/547 (59%), Gaps = 41/547 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++F  N  I+  +   ++ +A  LYK + R     PDNFT+ +L K CA     + G E 
Sbjct: 65  DTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLET 124

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            GHV+K+GF  DMYV  A++ ++   G+LGLA  VF++   R+LVSW +LI G+VR G  
Sbjct: 125 HGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDM 184

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A  LF+ M                           GR+   +             N L
Sbjct: 185 GNAWFLFKLMP--------------------------GRDSAAF-------------NLL 205

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +D YVK G +ESA  +FD M  + V+S T+MI GY   G +  AR +FD +PEK +V WN
Sbjct: 206 IDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWN 265

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGI-KPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           A+IGGY Q K+  EAL LF E+Q++ + +P+ VT V  L A + LGAL+ G W+HRF+++
Sbjct: 266 AMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQR 325

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +  +  V + T+LVDMY KCG I+KA +VF E+P++ + T+ A+I G A++G A +A+  
Sbjct: 326 KKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEA 385

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           FSEM   G+ P++IT  G+LSAC HGGLV+EG+  F  M     LSPK++HY C+VDLLG
Sbjct: 386 FSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDLLG 444

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L+EAE LI+SMP  A+ ++  +  FAC    +V+  +R   + + ++P ++GIYV+
Sbjct: 445 RAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVM 504

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           + N+Y     W++  ++  +M  RG +K  G S+IEV+  + EFI    +HP+L+ I   
Sbjct: 505 MRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRVSEFISGGIAHPQLDVIESV 564

Query: 581 LVQLTRH 587
           + QL  H
Sbjct: 565 IGQLWIH 571



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 163/349 (46%), Gaps = 41/349 (11%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    K+  ++ + +  SW   I G++  G M  A  L+K M        D+  + LL 
Sbjct: 152 NLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLM-----PGRDSAAFNLLI 206

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
                +G       +F  +     + ++    ++I+ + + GD+  A  +FD    +NLV
Sbjct: 207 DGYVKVGDMESARSLFDEMP----ERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLV 262

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           SWN++I G+ ++  P EA++LFR++Q   V EP+EVT++ ++ A A L  L LG  +H +
Sbjct: 263 SWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRF 322

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           +    L   V +  +L+DMY+KCG++  A ++F  +  K   +   +I G+A  G     
Sbjct: 323 VQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGL---- 378

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                      + EAL  F EMQ  GIKP+ +T    LSACS  
Sbjct: 379 ---------------------------ASEALEAFSEMQQEGIKPNDITMTGVLSACSHG 411

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
           G +++G    + + +   +  +     LVD+  + G + +A  +   MP
Sbjct: 412 GLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMP 460


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 343/593 (57%), Gaps = 25/593 (4%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILF--------NVQNPNSFSWNVAIRG 52
           +  TG I++    +R+I   + S  K L    + LF        + +  N F WN  I+ 
Sbjct: 93  LITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKS 152

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
           F       EA  ++  ML NG    D F++ L+ K C+ LGL   G +I G +  +    
Sbjct: 153 FSHGEDPXEAFXIFNLMLENG-VCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGXMEIGS 211

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+++ N ++ +++ CG LG+A  +FD    R+ VS+NS+I+G+V+ G  + A  LF  M 
Sbjct: 212 DVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMP 271

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E  + + ++   M+S  A+ E+   G  + W + E      +   N+++D  VKCGK+E
Sbjct: 272 ME--QKNLISWNSMISGYARSEE---GLRVAWELFEEMPKRDLISWNSMIDGCVKCGKME 326

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  + VVS   M+ GYAK G +DIAR +FD++PE+ V+  NA++ GYVQ   
Sbjct: 327 NAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGX 386

Query: 293 SKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             EAL  FH+M +   + P   T +  LSA +QLG  D+G+ +H +IE   F+L+  LG 
Sbjct: 387 LMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGX 446

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DMYAKCG+I  AL + H         + AIJ GLA+HG    A   F EM  + + P
Sbjct: 447 ALIDMYAKCGSIDNAL-IDH---------WNAIJXGLAIHGLGEVAFELFMEMEKLFVKP 496

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           B+ITF+G+L+AC H GLV EG   F  M  + ++ PKL+HY CMVD+LGR+G +EE ++ 
Sbjct: 497 BDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVEEXKKF 556

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           +  MP+  + VVW  L  ACR H N +IGE  A  L+ +D  +   YVLL+N+Y    MW
Sbjct: 557 VEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAXFGMW 616

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            +  ++R MM++R ++K PGCS IE+ G ++EF VRDKSHP+   I +   +L
Sbjct: 617 NDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQRLPIVNISAEL 669


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/622 (35%), Positives = 340/622 (54%), Gaps = 42/622 (6%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  + G+  ++LIA  + S     +    IL ++ +P  +S++  I    +     +++
Sbjct: 44  SGAQNDGYISAKLIA--SYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSI 101

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +M  +G   PD    P LFKVCA L     G +I       G D+D +V  ++ H+
Sbjct: 102 GVFSRMFSHG-LIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHM 160

Query: 124 FVSCGDLGLACNVFD-----------------------ESCVR------------NLVSW 148
           ++ CG +G A  VFD                       E  VR            N+VSW
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSW 220

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N +++GF RSG+ +EA+ +F+ M      PD+VT+  ++ +    E+LN+GR+IH Y+ +
Sbjct: 221 NGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIK 280

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            GL     + +A++DMY K G +    ++FD         C   I G ++ G +D A ++
Sbjct: 281 QGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEM 340

Query: 269 FDDLPEKY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           F    E+     VV W +II G  Q  +  EAL LF EMQ  G+KP+ VT    L AC  
Sbjct: 341 FGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGN 400

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           + AL  G   H F  + +   +V +G+AL+DMYAKCG I  +  VF+ MP +N + + ++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSL 460

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           + G ++HGKA + +S F  ++   L PD I+F  +LSAC   GL DEG KYF  MS  + 
Sbjct: 461 MNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYG 520

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           + P+L+HYSCMV+LLGR+G L+EA  LI+ +P   D  VWGAL  +CRL  NV + E AA
Sbjct: 521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAA 580

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            KL  L+P++ G YVL++N+Y    MW E   +R  ME  G++K PGCS I+V   +Y  
Sbjct: 581 QKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTL 640

Query: 565 IVRDKSHPELEQIYDCLVQLTR 586
           +  DKSHP+++QI + + +++ 
Sbjct: 641 LACDKSHPQIDQITEKMDEISE 662



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 196/430 (45%), Gaps = 41/430 (9%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +LK G   D Y+   +I  + +      A  +        + S++SLI    ++    ++
Sbjct: 41  ILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQS 100

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I +F  M    + PD   +  +   CA+L     G++IH     SGL +   +  +L  M
Sbjct: 101 IGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHM 160

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP----EKYVVPW 280
           Y++CG++  A ++FD M  K VV+C+ ++ GYA+ G L+   +I  ++     E  +V W
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSW 220

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N I+ G+ ++   KEA+ +F +M   G  PD VT    L +      L+ G  IH ++ K
Sbjct: 221 NGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIK 280

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-------------------------- 374
           +    +  + +A++DMY K G++   +++F E                            
Sbjct: 281 QGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEM 340

Query: 375 ---------ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
                    E N +++T+II G A +GK ++A+  F EM   G+ P+ +T   +L AC +
Sbjct: 341 FGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGN 400

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
              +  GR        +  L   +   S ++D+  + G ++ ++ +   MP   ++V W 
Sbjct: 401 IAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMSQIVFNMMP-TKNLVCWN 458

Query: 486 ALFFACRLHG 495
           +L     +HG
Sbjct: 459 SLMNGYSMHG 468



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ITGL  +G     L  F    E K               N  SW   I G  + GK  EA
Sbjct: 325 ITGLSRNGLVDKALEMFGLFKEQK------------MELNVVSWTSIIAGCAQNGKDIEA 372

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           ++L+++M +  G +P+  T P +   C ++     G    G  +++    D++V +A+I 
Sbjct: 373 LELFREM-QVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALID 431

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG + ++  VF+    +NLV WNSL+NG+   G  +E + +F  +   R++PD ++
Sbjct: 432 MYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFIS 491

Query: 183 MIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              ++SAC Q+   + G +    +SE  G+   +   + ++++  + GKL+ A ++   +
Sbjct: 492 FTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEI 551


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/568 (37%), Positives = 323/568 (56%), Gaps = 44/568 (7%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A+S  +  +   ++   VQ PN    N  IR   +  +  +A  ++ +M R  G   DNF
Sbjct: 60  ALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQR-FGLFADNF 118

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL--ACNVFD 138
           TYP L K C+      +   +  H+ KLG   D+YV NA+I  +  CG LG+  A  +F+
Sbjct: 119 TYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFE 178

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           +   R+ VSWNS++ G V++G  R+A RLF          DE+    ++S          
Sbjct: 179 KMSERDTVSWNSMLGGLVKAGELRDARRLF----------DEMPQRDLIS---------- 218

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
                W              N ++D Y +C ++  A E+F+ M  +  VS +TM++GY+K
Sbjct: 219 -----W--------------NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSK 259

Query: 259 FGFLDIARKIFDD--LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
            G +++AR +FD   LP K VV W  II GY +    KEA  L  +M A+G+K DA   +
Sbjct: 260 AGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVI 319

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             L+AC++ G L  G+ IH  +++ N   N  +  AL+DMYAKCGN+ KA  VF+++P++
Sbjct: 320 SILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK 379

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + +++  ++ GL +HG   +AI  FS M   G+ PD++TF+ +L +C H GL+DEG  YF
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF 439

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             M  ++ L P+++HY C+VDLLGR G L+EA +++++MPM  +VV+WGAL  ACR+H  
Sbjct: 440 YSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNE 499

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           V I +     L++LDP D G Y LL+N+Y  +  WE    +R  M+  GVEK  G SS+E
Sbjct: 500 VDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVE 559

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +   ++EF V DKSHP+ +QIY  L  L
Sbjct: 560 LEDGIHEFTVFDKSHPKSDQIYQMLGSL 587



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 53/298 (17%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           +LN  +++H  I    L   + +A  L+     C +   A  +F+ +    V  C     
Sbjct: 31  NLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLC----- 85

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                                     N++I  + Q  +  +A  +F EMQ  G+  D  T
Sbjct: 86  --------------------------NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFT 119

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA--KALQVFHE 372
               L ACS    L     +H  IEK   + ++ +  AL+D Y++CG +    A+++F +
Sbjct: 120 YPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEK 179

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M ER+++++ +++GGL   G+  DA   F EM       D I++  +L          +G
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMP----QRDLISWNTML----------DG 225

Query: 433 RKYFAQMSSIFRLSPKLKH-----YSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVW 484
                +MS  F L  K+       +S MV    ++G +E A  +   MP+ A +VV W
Sbjct: 226 YARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTW 283


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/586 (36%), Positives = 332/586 (56%), Gaps = 35/586 (5%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + I+GL  +GF  ++L+     S    + Y  K+      P+ F WN  IR +      R
Sbjct: 79  LVISGLQHNGFLMTKLVN--GSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYR 136

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + V++Y+ M R  G  PD FT+P + K C  L    L   I G ++K GF  D++V N +
Sbjct: 137 DTVEMYRWM-RWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGL 195

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++  CG +G+A  VFD    R +VSW S+I+G+ ++G   EA+R+F  M+   V+PD 
Sbjct: 196 VALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDW 255

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           + ++ ++ A   ++DL  GR IH ++ + GL     L  +L   Y KCG           
Sbjct: 256 IALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCG----------- 304

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                + +A+  FD +    V+ WNA+I GY +   ++EA+ LF
Sbjct: 305 --------------------LVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLF 344

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           H M +  IKPD+VT    + A +Q+G+L+   W+  ++ K N+  ++ + T+L+DMYAKC
Sbjct: 345 HYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKC 404

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G++  A +VF    +++ + ++A+I G  LHG+  +AI+ +  M   G+ P+++TF+G+L
Sbjct: 405 GSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLL 464

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           +AC H GLV EG + F  M   F + P+ +HYSC+VDLLGR+G L EA   I  +P+   
Sbjct: 465 TACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPG 523

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           V VWGAL  AC+++  V++GE AA KL  LDP ++G YV L+N+Y  S +W+    VR +
Sbjct: 524 VSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVL 583

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           M E+G+ K  G S IE+NG L  F V DKSHP  ++I+D L +L R
Sbjct: 584 MREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLER 629


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/584 (34%), Positives = 327/584 (55%), Gaps = 30/584 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM------------------ 69
           +D+  K+     NP+ F WN  I G+ + G +++A++L+ +M                  
Sbjct: 165 MDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQH 224

Query: 70  ------------LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
                       + N G RP++ TY  +   C S+     G  +   ++++   +D+Y  
Sbjct: 225 GFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAG 284

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
             +I ++  CG L  A  VFD     N VSW SLI G  ++GF  EA+ LF  M+   V 
Sbjct: 285 CGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVA 344

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            D+ T+  ++  C   +D+++G ++H +    GL  +VP+ANAL+ MY KCG +  A   
Sbjct: 345 SDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHA 404

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F+ M  + ++S T MI  +++ G ++ AR+ FD +PE+ V+ WN+++  Y+Q    +E L
Sbjct: 405 FELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGL 464

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            ++ +M   G+K D +T    +SAC+ L  L  G  I    EK  F+ NV +  ++V MY
Sbjct: 465 KVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMY 524

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           ++CG I +A ++F  +  +N +++ A++ G A +G+    I  F +M+ +G +PD+I+++
Sbjct: 525 SRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYV 584

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +LS C H G V EG+ YF  M+    +SP  +H+ CMVDLLGR+G LE+A+ LI  MP 
Sbjct: 585 SVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPF 644

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             +  +WGAL  ACR+HGN  + E A   LLELD +  G Y LLAN+Y +S   +    V
Sbjct: 645 KPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNV 704

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           RK+M ++GV K PGCS IEV+  ++ F V D +HP+++ ++  L
Sbjct: 705 RKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 234/475 (49%), Gaps = 24/475 (5%)

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K CASL    +  ++   ++ +G    +++ N +++++ +CG +  A  VF      N+ 
Sbjct: 12  KECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVY 71

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS-------------ACAQL 193
           SWN++I+GF  SG  REA +LF  M     E D V+   M+S             A   L
Sbjct: 72  SWNTMISGFADSGQMREAEKLFEKMP----ERDSVSWNSMMSGYFHNGELEATIKASGSL 127

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L L  ++H +  +    +   +  +++DMY+KCG ++ A+++F    N ++    +MI
Sbjct: 128 GYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMI 187

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY+K+G +  A ++F  +PE+  V WN +I    Q     E L  F EM   G +P+++
Sbjct: 188 YGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSM 247

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    LSAC+ +  L+ G  +H  I +    L+V  G  L+DMYAKCG +  A QVF  +
Sbjct: 248 TYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGL 307

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            E N++++T++IGG+A  G   +A+  F++M  V +  D+ T   +L  C     +  G 
Sbjct: 308 TEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGE 367

Query: 434 KYFAQMSSIFR-LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           +  A   +I R L   +   + +V +  + G + +A      MP+  D++ W A+  A  
Sbjct: 368 QLHAH--TITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPI-RDIISWTAMITAFS 424

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             G+V   E+A     ++  ++   +  +   Y     WEE  KV   M   GV+
Sbjct: 425 QAGDV---EKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 217/525 (41%), Gaps = 103/525 (19%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD--------NFTYPL 84
           ++   +  PN +SWN  I GF ++G+MREA  L+++M        +        N     
Sbjct: 60  RVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEA 119

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---- 140
             K   SLG   L  ++ G   K  F +D  V  +V+ +++ CG +  A  VF  +    
Sbjct: 120 TIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPS 179

Query: 141 --CV-------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
             C                          R+ VSWN++I+   + GF  E +  F +M  
Sbjct: 180 LFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWN 239

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
           +   P+ +T   ++SAC  + DL  G  +H  I      L V     L+DMY KCG+LES
Sbjct: 240 QGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLES 299

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A ++FD +     VS T++I G A+ GF                                
Sbjct: 300 ARQVFDGLTEHNAVSWTSLIGGVAQAGF-------------------------------Q 328

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
           +EAL LF++M+   +  D  T    L  C     +  G  +H        + +V +  AL
Sbjct: 329 EEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANAL 388

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS----------- 402
           V MYAKCG++ KA   F  MP R+ +++TA+I   +  G    A  YF            
Sbjct: 389 VTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWN 448

Query: 403 --------------------EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
                               +M+  G+  D ITF   +SAC    ++  G +  AQ   +
Sbjct: 449 SMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKL 508

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
              S  +   + +V +  R G +EEA+++  S+ M  ++V W A+
Sbjct: 509 -GFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVM-KNLVSWNAM 551



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S++ +++   +    +   N  SWN  +  +++ G   E + +Y QMLR  G + D  
Sbjct: 422 AFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLRE-GVKTDWI 480

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+      CA L +  LG +I     KLGF  ++ V N+V+ ++  CG +  A  +F   
Sbjct: 481 TFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI 540

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
            ++NLVSWN+++ G+ ++G  R+ I +F  M      PD+++ + ++S C+    ++ G+
Sbjct: 541 VMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQ 600

Query: 201 EIHWYISESGLTLTVPLAN---ALMDMYVKCGKLESAEEIFDSM 241
             ++++S +      P++     ++D+  + G+LE A+ + + M
Sbjct: 601 --YYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQM 642


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/483 (41%), Positives = 293/483 (60%), Gaps = 2/483 (0%)

Query: 104 HVLKLGFDVDMYVHNAVIH--VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            +++LG   D      VI        GDL  A  VFD+    +   +N++  G++R    
Sbjct: 42  QIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLA 101

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           R  I ++  M  + V P++ T   ++ AC     +  G++IH ++ + G        N L
Sbjct: 102 RNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNL 161

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + MYV    LE A  +FD+M  + VVS T++I GY+++GF+D AR++F+ +PE+  V WN
Sbjct: 162 IHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWN 221

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I  YVQ+ R  EA ALF  M+   +  D       LSAC+ LGAL+ G WIH +IEK 
Sbjct: 222 AMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS 281

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
              L+  L T ++DMY KCG + KA +VF+E+P++   ++  +IGGLA+HGK   AI  F
Sbjct: 282 GIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELF 341

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM    + PD ITF+ +LSAC H GLV+EG+ YF  M+ +  L P ++H+ CMVDLLGR
Sbjct: 342 KEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGR 401

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +GLLEEA +LI  MP+  D  V GAL  ACR+HGN  +GE+   K++EL+P +SG YVLL
Sbjct: 402 AGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLL 461

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y  +  WE+  KVRK+M +RGV+K PG S IE    + EFI   ++HP+ ++IY  L
Sbjct: 462 ANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKL 521

Query: 582 VQL 584
            ++
Sbjct: 522 DEI 524



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 198/428 (46%), Gaps = 79/428 (18%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL +   A  R+I FCAIS+S +L+Y  ++   + +P+++ +N   RG+L     R  + 
Sbjct: 47  GLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIF 106

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           +Y +ML      P+ FTYP L + C        G +I  HVLK GF  D +  N +IH++
Sbjct: 107 MYSRMLHKS-VSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMY 165

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP----------------------- 161
           V+   L  A  VFD    R++VSW SLI G+ + GF                        
Sbjct: 166 VNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIA 225

Query: 162 --------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
                    EA  LF  M+LE V  D+     M+SAC  L  L  G+ IH YI +SG+ L
Sbjct: 226 AYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIEL 285

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              LA  ++DMY KCG LE A E+F+ +  K + S   MI G A  G             
Sbjct: 286 DSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHG------------- 332

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                             + + A+ LF EM+   + PD +T V+ LSAC+  G +++G  
Sbjct: 333 ------------------KGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKH 374

Query: 334 IHRFIEKENFNLNVVLGTA--------LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAI 384
             +++ +       VLG          +VD+  + G + +A ++ +EMP   ++    A+
Sbjct: 375 YFQYMTE-------VLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGAL 427

Query: 385 IGGLALHG 392
           +G   +HG
Sbjct: 428 VGACRIHG 435


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/481 (40%), Positives = 291/481 (60%), Gaps = 2/481 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN--VFDESCVRNLVSWNSLINGFVR 157
           +I G +LK G   +    + ++  +     + LA    VFD     N V WN+++  +  
Sbjct: 28  QIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSN 87

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S  P  A+ L+  M    V  +  T   ++ AC+ L      ++IH +I + G  L V  
Sbjct: 88  SNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYA 147

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N+L+ +Y   G ++SA  +F+ +  + +VS   MI GY KFG LD+A KIF  +PEK V
Sbjct: 148 TNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNV 207

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W  +I G+V+    KEAL+L  +M   GIKPD++T    LSAC+ LGAL+ G WIH +
Sbjct: 208 ISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTY 267

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           IEK    ++ VLG  L DMY KCG + KAL VF ++ ++    +TAIIGGLA+HGK  +A
Sbjct: 268 IEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREA 327

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           + +F++M   G+ P+ ITF  IL+AC H GL +EG+  F  MSS++ + P ++HY CMVD
Sbjct: 328 LDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVD 387

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           L+GR+GLL+EA + I SMP+  +  +WGAL  AC+LH +  +G+     L+ELDP  SG 
Sbjct: 388 LMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGR 447

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y+ LA++Y  +  W +  +VR  ++ RG+   PGCSSI +NG+++EF   D SHP +++I
Sbjct: 448 YIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGDGSHPHIQEI 507

Query: 578 Y 578
           Y
Sbjct: 508 Y 508



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 194/421 (46%), Gaps = 67/421 (15%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G I +    S L+   A  E  NL Y   +  ++ +PN+  WN  +R +  +     A+ 
Sbjct: 37  GTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALL 96

Query: 65  LYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           LY QML N  + P N +T+P L K C++L       +I  H++K GF +++Y  N+++ V
Sbjct: 97  LYHQMLHN--SVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRV 154

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLIN------------------------------ 153
           +   G++  A  +F++   R++VSWN +I+                              
Sbjct: 155 YAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMI 214

Query: 154 -GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            GFVR G  +EA+ L + M +  ++PD +T+   +SACA L  L  G+ IH YI ++ + 
Sbjct: 215 VGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIK 274

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           +   L   L DMYVKCG++E A  +F                                 L
Sbjct: 275 IDPVLGCVLTDMYVKCGEMEKALLVF-------------------------------SKL 303

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            +K V  W AIIGG     + +EAL  F +MQ  GI P+++T    L+ACS  G  ++G 
Sbjct: 304 EKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGK 363

Query: 333 WIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLAL 390
            +   +    N   ++     +VD+  + G + +A +    MP + N+  + A++    L
Sbjct: 364 SLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQL 423

Query: 391 H 391
           H
Sbjct: 424 H 424


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/494 (40%), Positives = 297/494 (60%), Gaps = 35/494 (7%)

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
           L+  +  ++    +   I  H LKLGF+  ++V NA+IH++  CG LG A  +FD    R
Sbjct: 29  LVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDR 88

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +LVSWN+LI G+ +    +E +RLF  M    ++ D VTM+ ++ AC+ L D      + 
Sbjct: 89  DLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMV 148

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            YI E+ L + V L N L+DMY + G L +                              
Sbjct: 149 KYIKENNLEIDVYLGNTLIDMYGRLGNLTA------------------------------ 178

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            ARK+FD++P++ V+ W ++I GY QA +  +A+ LF EM A  +KPD VT    LSAC+
Sbjct: 179 -ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACA 237

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LG LD G  +H +I +     ++ +G +L+DMY KCG + KAL+VFH M +++S+++T+
Sbjct: 238 HLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTS 297

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GLA++G A  A+  FS+M+  G+ P   TF+GIL AC H GLV++G +YF  M S+ 
Sbjct: 298 VISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVH 357

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            L P +KHY C+VDLL RSG +++A + I+ MP+  DVVVW  L  AC+LHGNV + E A
Sbjct: 358 GLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIA 417

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
             +LLELDP DSG YVLL+N Y   + W++A K+R++ME+  V+K  G SSIEV+G++  
Sbjct: 418 TKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSN 477

Query: 564 FIVRDKSHPELEQI 577
           +       P L Q+
Sbjct: 478 Y----SQEPGLLQV 487



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 2/216 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    K+  N+   +  SW   I G+ +  +  +AV L+++M+     +PD  T   + 
Sbjct: 175 NLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMA-AKVKPDKVTVASVL 233

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   +G+ +  ++ + G   D+YV N++I ++  CG +  A  VF     ++ V
Sbjct: 234 SACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSV 293

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW S+I+G   +GF   A+ LF  M  E V+P   T +G++ ACA    +N G E    +
Sbjct: 294 SWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESM 353

Query: 207 -SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            S  GL   +     ++D+  + G ++ A E    M
Sbjct: 354 ESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKM 389


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/622 (35%), Positives = 341/622 (54%), Gaps = 42/622 (6%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  + G+  ++LIA  + S     +    +L ++ +P  +S++  I    +     +++
Sbjct: 44  SGAQNDGYISAKLIA--SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSI 101

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +M  +G   PD+   P LFKVCA L    +G +I       G D+D +V  ++ H+
Sbjct: 102 GVFSRMFSHG-LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHM 160

Query: 124 FVSCGDLGLACNVFD-----------------------ESCVR------------NLVSW 148
           ++ CG +G A  VFD                       E  VR            N+VSW
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N +++GF RSG+ +EA+ +F+ +      PD+VT+  ++ +    E LN+GR IH Y+ +
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            GL     + +A++DMY K G +     +F+         C   I G ++ G +D A ++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 269 FDDLPEKY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           F+   E+     VV W +II G  Q  +  EAL LF EMQ  G+KP+ VT    L AC  
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           + AL  G   H F  + +   NV +G+AL+DMYAKCG I  +  VF+ MP +N + + ++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSL 460

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           + G ++HGKA + +S F  ++   L PD I+F  +LSAC   GL DEG KYF  MS  + 
Sbjct: 461 MNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG 520

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           + P+L+HYSCMV+LLGR+G L+EA  LI+ MP   D  VWGAL  +CRL  NV + E AA
Sbjct: 521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAA 580

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            KL  L+P++ G YVLL+N+Y    MW E   +R  ME  G++K PGCS I+V   +Y  
Sbjct: 581 EKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTL 640

Query: 565 IVRDKSHPELEQIYDCLVQLTR 586
           +  DKSHP+++QI + + ++++
Sbjct: 641 LAGDKSHPQIDQITEKMDEISK 662



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 198/430 (46%), Gaps = 41/430 (9%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +LK G   D Y+   +I  + +      A  V        + S++SLI    ++    ++
Sbjct: 41  ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQS 100

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I +F  M    + PD   +  +   CA+L    +G++IH     SGL +   +  ++  M
Sbjct: 101 IGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHM 160

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP----EKYVVPW 280
           Y++CG++  A ++FD M +K VV+C+ ++  YA+ G L+   +I  ++     E  +V W
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N I+ G+ ++   KEA+ +F ++   G  PD VT    L +      L+ G  IH ++ K
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 341 ENFNLNVVLGTALVDMYAKCGN-------------------------------IAKALQV 369
           +    +  + +A++DMY K G+                               + KAL++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 370 FHEMPER----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           F    E+    N +++T+II G A +GK ++A+  F EM   G+ P+ +T   +L AC +
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
              +  GR        +  L   +   S ++D+  + G +  ++ +   MP   ++V W 
Sbjct: 401 IAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMMP-TKNLVCWN 458

Query: 486 ALFFACRLHG 495
           +L     +HG
Sbjct: 459 SLMNGFSMHG 468


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/529 (40%), Positives = 314/529 (59%), Gaps = 28/529 (5%)

Query: 82  YPLL----FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG--DLGLACN 135
           YP L     K C S+  R L  ++   ++K G   D  +   ++ +  +    D+G A +
Sbjct: 14  YPRLDVPQIKACKSM--RELK-QVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALS 70

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPR-EAIRLFRDMQLE-RVEPDEVTMIGMVSACAQL 193
           VFD+   RN  +WN++I     +     +A+ +F  M  E  VEP++ T   ++ ACA +
Sbjct: 71  VFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVM 130

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-------DSMVNK-- 244
             L  G+++H  + + GL     +   L+ MYV CG +E A  +F       D + N   
Sbjct: 131 ARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVR 190

Query: 245 -------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
                   VV C  M+ GYA+ G L  AR++FD + ++ VV WN +I GY Q    KEA+
Sbjct: 191 DERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAI 250

Query: 298 ALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
            +FH M   G + P+ VT V  L A S+LG L+ G W+H + EK    ++ VLG+ALVDM
Sbjct: 251 EIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDM 310

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           YAKCG+I KA+QVF  +P+ N +T+ A+IGGLA+HGKA D  +Y S M   G+ P ++T+
Sbjct: 311 YAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTY 370

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + ILSAC H GLVDEGR +F  M +   L PK++HY CMVDLLGR+G LEEAE+LI +MP
Sbjct: 371 IAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMP 430

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           M  D V+W AL  A ++H N+ IG RAA  L+++ P DSG YV L+NMY  S  W+    
Sbjct: 431 MKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAA 490

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           VR MM++  + K PGCS IE++G+++EF+V D SH   + I+  L +++
Sbjct: 491 VRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEIS 539



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 196/439 (44%), Gaps = 82/439 (18%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET-GKMREA 62
           TG        + ++   A S+ +++ Y   +   +   N F+WN  IR   ET  +  +A
Sbjct: 41  TGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDA 100

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++ QML      P+ FT+P + K CA +     G ++ G +LK G   D +V   ++ 
Sbjct: 101 LLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLR 160

Query: 123 VFVSCGDLGLA------------------------------CNV---------------- 136
           ++V CG +  A                              CNV                
Sbjct: 161 MYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARE 220

Query: 137 -FDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEPDEVTMIGMVSACAQLE 194
            FD    R++VSWN +I+G+ ++GF +EAI +F R MQ+  V P+ VT++ ++ A ++L 
Sbjct: 221 LFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLG 280

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L LG+ +H Y  ++ + +   L +AL+DMY KCG +E A ++F+               
Sbjct: 281 VLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFER-------------- 326

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                            LP+  V+ WNA+IGG     ++ +       M+  GI P  VT
Sbjct: 327 -----------------LPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVT 369

Query: 315 TVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
            +  LSACS  G +D+G  + +  +        +     +VD+  + G + +A ++   M
Sbjct: 370 YIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNM 429

Query: 374 PER-NSLTYTAIIGGLALH 391
           P + + + + A++G   +H
Sbjct: 430 PMKPDDVIWKALLGASKMH 448


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/514 (38%), Positives = 310/514 (60%), Gaps = 5/514 (0%)

Query: 71  RNGGTRPDNFTYPLLFKV---CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           R G   P     P L +    C   G    G        ++G   D +V  A++  + +C
Sbjct: 61  RTGLPPPGPRALPALLRSAARCVGAGAYVRGAHALA--FRVGSLDDGFVRTALVGAYAAC 118

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G +G A  VFD   VR++VSW  +++ + ++   +EA+  F  M+   V  D++ +  ++
Sbjct: 119 GCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVL 178

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SAC  +  L  G+ IH Y+  S + +   L++AL+++Y  C  +E AE++++ M  K +V
Sbjct: 179 SACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLV 238

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T M+ GYA+    +IAR IFD +PEK VV W+A+I GY  + +  EAL+LF++MQ  G
Sbjct: 239 SSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECG 298

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           I+PD VT +  +SAC+ LG+LD   WIH FI+    N  + +  AL+DM+AKCG I  AL
Sbjct: 299 IRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLAL 358

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            +F+EMP++N +T+T++I   A+HG    A+  F +M   G+ P+E+TFL +L ACCH G
Sbjct: 359 NIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAG 418

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LV EGR  F+ M   + + PK +HY CMVDLLGR+ L++EA  LI SM +  +V VWG+L
Sbjct: 419 LVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSL 478

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             AC +HG++ +G  AA K+L+LDP   G  VLL+ +Y  S+   +A +VR +M+ +GV 
Sbjct: 479 LAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVS 538

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           K  G S +++N   +EF    + +PE ++I+  L
Sbjct: 539 KETGLSWMDLNEPFHEFTAGGEKYPENDKIFQKL 572



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 147/318 (46%), Gaps = 63/318 (19%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW V +  + +T   +EA+  + +M +N G   D      +   C  +     G  I  +
Sbjct: 138 SWGVMLDSYCQTRNYKEALLQFAKM-KNSGVLSDQLILATVLSACGHIRHLRTGKSIHSY 196

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDL-----------------------GLACN------ 135
           +L     ++ ++ +A+I+++ SC  +                       G A N      
Sbjct: 197 MLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIA 256

Query: 136 --VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             +FD    +++VSW+++I+G+  S  P EA+ LF DMQ   + PDEVTM+ ++SACA L
Sbjct: 257 RYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANL 316

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L+  + IH +I  +GL   + + NAL+DM+ KCG +  A  IF+ M  K V++ T+MI
Sbjct: 317 GSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMI 376

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
             +A  G                                 K AL LF +M+  G++P+ V
Sbjct: 377 TAFAMHG-------------------------------DGKSALCLFEQMRNEGVEPNEV 405

Query: 314 TTVHCLSACSQLGALDDG 331
           T ++ L AC   G + +G
Sbjct: 406 TFLNLLYACCHAGLVHEG 423



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW+  I G+ ++ +  EA+ L+  M +  G RPD  T   +   CA+LG       I   
Sbjct: 270 SWSAMISGYADSNQPNEALSLFNDM-QECGIRPDEVTMLSVISACANLGSLDKAKWIHAF 328

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +   G +  +++ NA+I +F  CG + LA N+F+E   +N+++W S+I  F   G  + A
Sbjct: 329 IKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSA 388

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMD 223
           + LF  M+ E VEP+EVT + ++ AC     ++ GR +    + + G+         ++D
Sbjct: 389 LCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVD 448

Query: 224 MYVKCGKLESAEEIFDSM 241
           +  +   ++ A  + +SM
Sbjct: 449 LLGRAKLMQEAVNLIESM 466


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/538 (40%), Positives = 316/538 (58%), Gaps = 38/538 (7%)

Query: 25  SKNLDYCTKILFNVQN-PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           S+N + C  +LF+  N PN+   N  I           ++  Y + LR  G +PD  T+P
Sbjct: 57  SQNQNTCLLLLFDTINTPNTRLLNKMIAA---CSHPHISLLCYAK-LRQKGVQPDKHTFP 112

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
           LL K   S  +    + I+  + KLGFD+D+++ NA+I  F + G +  A  VFDES  +
Sbjct: 113 LLLKT-FSKSIAQNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQ 171

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           + V+W +LING+V++  P EA++ F  M+L     D VT+  ++ A A + D + GR +H
Sbjct: 172 DTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVH 231

Query: 204 WYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
            +  E+G + L   + +ALMDMY KCG  E A              C             
Sbjct: 232 GFYVEAGRVQLDGYVFSALMDMYFKCGHCEDA--------------C------------- 264

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
               K+F++LP + VV W  ++ GYVQ+ + ++AL  F +M +  + P+  T    LSAC
Sbjct: 265 ----KVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSAC 320

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +Q+GALD G  +H++IE    N+NV LGTALVDMYAKCG+I +AL+VF  MP +N  T+T
Sbjct: 321 AQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWT 380

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            II GLA+HG AL A++ F  M+  G+ P+E+TF+G+L+AC HGG V+EG++ F  M   
Sbjct: 381 VIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHA 440

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + L P++ HY CMVD+LGR+G LE+A+Q+I +MPM     V GALF AC +H    +GE 
Sbjct: 441 YHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEH 500

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
               L+   P  SG Y LLAN+Y+    WE A +VRK+M+   V K PG S IEV+G 
Sbjct: 501 IGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRIEVDGF 558


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 315/547 (57%), Gaps = 34/547 (6%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           N  S  WN  +R   +  +  +A+ LY QMLR+G  RP+ FT+P   K CA+L L  LG 
Sbjct: 11  NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHG-DRPNAFTFPFALKSCAALSLPILGS 69

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VRNL-VSWNSLINGFVR 157
           +  G + K+G   + +V   +I ++     +  A  VF+E+   R L V +N+L++G+V 
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 129

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +    EA+ LFR M  E V  + VT++G++ AC    +L LG  +H    + G    V +
Sbjct: 130 NSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 189

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N  + MY+KC                               G ++ A+K+FD++P K +
Sbjct: 190 VNCFITMYMKC-------------------------------GSVNYAQKLFDEMPVKGL 218

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + WNA++ GY Q   +   L L+  M   G+ PD VT V  LS+C+ LGA   G  +   
Sbjct: 219 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 278

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+   F  N  L  AL++MYA+CGN+ KA  VF  MPER  +++TAIIGG  +HG    A
Sbjct: 279 IQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 338

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F EMI  G+ PD   F+ +LSAC H GL D+G +YF  M   ++L P  +HYSCMVD
Sbjct: 339 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 398

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L+EA+ LI SMP+  D  VWGAL  AC++H NV + E A  +++EL+P++ G 
Sbjct: 399 LLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGY 458

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLL+N+Y ++N  +   ++R MM+E+ ++K PGCS +E+ G ++ FIV D++H + ++I
Sbjct: 459 YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEI 518

Query: 578 YDCLVQL 584
           Y  L +L
Sbjct: 519 YRVLEEL 525



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 17/317 (5%)

Query: 7   ISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           + +GF     +  C I+   +  +++Y  K+   +      SWN  + G+ + G     +
Sbjct: 179 LKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVL 238

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           +LY+ M  N G  PD  T   +   CA+LG + +G+E+   +   GF  + +++NA+I++
Sbjct: 239 ELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINM 297

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG+L  A  VFD    R LVSW ++I G+   G    A++LF++M    +EPD    
Sbjct: 298 YARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAF 357

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM-DMYVKCGKLESAEEIFDSMV 242
           + ++SAC+     + G E    +  +      P   + M D+  + G+L+ A+ + +SM 
Sbjct: 358 VCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 417

Query: 243 NKTVVSCTTMIVGYAKF-GFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKRSK 294
            K   +    ++G  K    +++A   F+ + E  + P N  IG YV        A  SK
Sbjct: 418 IKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPEN--IGYYVLLSNIYSNANNSK 473

Query: 295 EALALFHEMQATGIKPD 311
             L +   M+   +K D
Sbjct: 474 GVLRIRIMMKEKKLKKD 490


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/622 (35%), Positives = 341/622 (54%), Gaps = 42/622 (6%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  + G+  ++LIA  + S     +    +L ++ +P  +S++  I    +     +++
Sbjct: 44  SGAQNDGYISAKLIA--SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSI 101

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +M  +G   PD+   P LFKVCA L    +G +I       G D+D +V  ++ H+
Sbjct: 102 GVFSRMFSHG-LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHM 160

Query: 124 FVSCGDLGLACNVFD-----------------------ESCVR------------NLVSW 148
           ++ CG +G A  VFD                       E  VR            N+VSW
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N +++GF RSG+ +EA+ +F+ +      PD+VT+  ++ +    E LN+GR IH Y+ +
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            GL     + +A++DMY K G +     +F+         C   I G ++ G +D A ++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 269 FDDLPEKY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           F+   E+     VV W +II G  Q  +  EAL LF EMQ  G+KP+ VT    L AC  
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           + AL  G   H F  + +   NV +G+AL+DMYAKCG I  +  VF+ MP +N + + ++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSL 460

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           + G ++HGKA + +S F  ++   L PD I+F  +LSAC   GL DEG KYF  MS  + 
Sbjct: 461 MNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG 520

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           + P+L+HYSCMV+LLGR+G L+EA  LI+ MP   D  VWGAL  +CRL  NV + E AA
Sbjct: 521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAA 580

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            KL  L+P++ G YVLL+N+Y    MW E   +R  ME  G++K PGCS I+V   +Y  
Sbjct: 581 EKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTL 640

Query: 565 IVRDKSHPELEQIYDCLVQLTR 586
           +  DKSHP+++QI + + ++++
Sbjct: 641 LAGDKSHPQIDQITEKMDEISK 662



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 198/430 (46%), Gaps = 41/430 (9%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +LK G   D Y+   +I  + +      A  V        + S++SLI    ++    ++
Sbjct: 41  ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQS 100

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I +F  M    + PD   +  +   CA+L    +G++IH     SGL +   +  ++  M
Sbjct: 101 IGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHM 160

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP----EKYVVPW 280
           Y++CG++  A ++FD M +K VV+C+ ++  YA+ G L+   +I  ++     E  +V W
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N I+ G+ ++   KEA+ +F ++   G  PD VT    L +      L+ G  IH ++ K
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 341 ENFNLNVVLGTALVDMYAKCGN-------------------------------IAKALQV 369
           +    +  + +A++DMY K G+                               + KAL++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 370 FHEMPER----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           F    E+    N +++T+II G A +GK ++A+  F EM   G+ P+ +T   +L AC +
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
              +  GR        +  L   +   S ++D+  + G +  ++ +   MP   ++V W 
Sbjct: 401 IAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMMP-TKNLVCWN 458

Query: 486 ALFFACRLHG 495
           +L     +HG
Sbjct: 459 SLMNGFSMHG 468


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/546 (35%), Positives = 315/546 (57%), Gaps = 32/546 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +++P+  SW+  I    + G+ REA +++K+M R+ G  P+ FT   L      L
Sbjct: 386 KVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRM-RHSGVIPNQFTLASLVSAATDL 444

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G  + G  I   V K GF+ D  V NA++ +++  G +   C VF+ +  R+L+SWN+L+
Sbjct: 445 GDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALL 504

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +GF  +      +R+F  M  E   P+  T I ++ +C+ L D++LG+++H  I ++ L 
Sbjct: 505 SGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD 564

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  AL+DMY                               AK  FL+ A  IF+ L
Sbjct: 565 GNDFVGTALVDMY-------------------------------AKNRFLEDAETIFNRL 593

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            ++ +  W  I+ GY Q  + ++A+  F +MQ  G+KP+  T    LS CS++  LD G 
Sbjct: 594 IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR 653

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H    K   + ++ + +ALVDMYAKCG +  A  VF  +  R+++++  II G + HG
Sbjct: 654 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 713

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +   A+  F  M+  G +PDE+TF+G+LSAC H GL++EG+K+F  +S I+ ++P ++HY
Sbjct: 714 QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHY 773

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVD+LGR+G   E E  I  M + ++V++W  +  AC++HGN+  GERAAMKL EL+P
Sbjct: 774 ACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEP 833

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           +    Y+LL+NM+    MW++   VR +M  RGV+K PGCS +EVNG ++ F+  D SHP
Sbjct: 834 EIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHP 893

Query: 573 ELEQIY 578
           ++ +I+
Sbjct: 894 KIREIH 899



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/539 (25%), Positives = 234/539 (43%), Gaps = 75/539 (13%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           +Y  K+   +   +  SW   I GF+  G    AV+L+ +M R G    + FTY    K 
Sbjct: 180 NYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREG-VEANEFTYATALKA 238

Query: 89  CA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           C+  L L F G ++    +K+G   D++V +A++ ++  CG++ LA  VF     +N VS
Sbjct: 239 CSMCLDLEF-GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVS 297

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN+L+NGF + G   + + LF  M    +   + T+  ++  CA   +L  G+ +H    
Sbjct: 298 WNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAI 357

Query: 208 ESGLTLTVPLANALMDMYVKC-------------------------------GKLESAEE 236
             G  L   ++  L+DMY KC                               G+   A E
Sbjct: 358 RIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAE 417

Query: 237 IFDSMVNKTVVS---------------------------------------CTTMIVGYA 257
           +F  M +  V+                                        C  ++  Y 
Sbjct: 418 VFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYM 477

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
           K G +    ++F+    + ++ WNA++ G+   +     L +F++M A G  P+  T + 
Sbjct: 478 KIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFIS 537

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L +CS L  +D G  +H  I K + + N  +GTALVDMYAK   +  A  +F+ + +R+
Sbjct: 538 ILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRD 597

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
              +T I+ G A  G+   A+  F +M   G+ P+E T    LS C     +D GR+  +
Sbjct: 598 LFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 657

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            M+     S  +   S +VD+  + G +E+AE +   + ++ D V W  +      HG 
Sbjct: 658 -MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQ 714



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 167/341 (48%), Gaps = 31/341 (9%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           Y  + + CAS G    G  I G V+K G + D ++ N++++V+  CG    AC VF E  
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            R++VSW +LI GFV  G+   A+ LF +M+ E VE +E T    + AC+   DL  G++
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H    + G    + + +AL+D+Y KCG++  AE +F  M  +  VS             
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVS------------- 297

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
                             WNA++ G+ Q   +++ L LF  M  + I     T    L  
Sbjct: 298 ------------------WNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG 339

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+  G L  G  +H    +    L+  +   LVDMY+KCG    AL+VF  + + + +++
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSW 399

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +AII  L   G++ +A   F  M   G++P++ T   ++SA
Sbjct: 400 SAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSA 440



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 221/508 (43%), Gaps = 74/508 (14%)

Query: 40  NPNSFSWN-------------------------------VAIRGFLETGKMREAVDLYKQ 68
           NP+S  WN                                 I GF+  G    AV+L+ +
Sbjct: 160 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219

Query: 69  MLRNGGTRPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           M R  G   + FTY    K C+  L L F G ++    +K+G   D++V +A++ ++  C
Sbjct: 220 MRRE-GVEANEFTYATALKACSMCLDLEF-GKQVHAEAIKVGDFSDLFVGSALVDLYAKC 277

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G++ LA  VF     +N VSWN+L+NGF + G   + + LF  M    +   + T+  ++
Sbjct: 278 GEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVL 337

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
             CA   +L  G+ +H      G  L   ++  L+DMY KC                   
Sbjct: 338 KGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKC------------------- 378

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                       G    A K+F  + +  VV W+AII    Q  +S+EA  +F  M+ +G
Sbjct: 379 ------------GLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           + P+  T    +SA + LG L  G  IH  + K  F  +  +  ALV MY K G++    
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF     R+ +++ A++ G   +      +  F++M+  G  P+  TF+ IL +C    
Sbjct: 487 RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            VD G++  AQ   I + S     +  + +VD+  ++  LE+AE +   + +  D+  W 
Sbjct: 547 DVDLGKQVHAQ---IVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWT 602

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQ 513
            +       G    GE+A    +++  +
Sbjct: 603 VIVAGYAQDGQ---GEKAVKCFIQMQRE 627



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 37/305 (12%)

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
           GM+  CA   DLN G+ IH  + +SG+     L N+L+++Y KCG               
Sbjct: 133 GMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSA------------- 179

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
                             + A K+F ++PE+ VV W A+I G+V       A+ LF EM+
Sbjct: 180 ------------------NYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMR 221

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             G++ +  T    L ACS    L+ G  +H    K     ++ +G+ALVD+YAKCG + 
Sbjct: 222 REGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A +VF  MP++N++++ A++ G A  G A   ++ F  M G  +   + T   +L  C 
Sbjct: 282 LAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           + G +  G+      S   R+  +L  +   C+VD+  + GL  +A ++   +    DVV
Sbjct: 342 NSGNLRAGQIVH---SLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVV 397

Query: 483 VWGAL 487
            W A+
Sbjct: 398 SWSAI 402


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/548 (38%), Positives = 318/548 (58%), Gaps = 37/548 (6%)

Query: 26  KNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKMRE-AVDLYKQMLRNGGTRPDNFTYP 83
           KN  Y + +  ++  +PN +++N+ IR    T      A+ L+ +M+    +  +     
Sbjct: 62  KNFTYASLLFSHIAPHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPF 121

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                CA+L +          V KL    D +  +++I ++  CG +  A  VFDE   R
Sbjct: 122 FFLS-CANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRR 180

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +LVSWNS+I G+ ++G  REA+ +F +M + +  EPDE++++ ++ AC +L DL LGR +
Sbjct: 181 DLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWV 240

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
             ++ E G+TL   + +AL+ MY KCG L S                             
Sbjct: 241 EGFVVERGMTLNSYIGSALISMYAKCGDLGS----------------------------- 271

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
             AR+IFD +  + V+ WNA+I GY Q   + EA++LFH M+   +  + +T    LSAC
Sbjct: 272 --ARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSAC 329

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + +GALD G  I  +  +  F  ++ + TAL+DMYAKCG++A A +VF EMP++N  ++ 
Sbjct: 330 ATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWN 389

Query: 383 AIIGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           A+I  LA HGKA +A+S F  M   G G  P++ITF+G+LSAC H GLV+EG + F  MS
Sbjct: 390 AMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMS 449

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           ++F L PK++HYSCMVDLL R+G L EA  LI  MP   D V  GAL  ACR   NV IG
Sbjct: 450 TLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIG 509

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ER    +LE+DP +SG Y++ + +Y + NMWE++ ++R +M ++G+ KTPGCS IEV   
Sbjct: 510 ERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENH 569

Query: 561 LYEFIVRD 568
           L+EF   D
Sbjct: 570 LHEFHAGD 577


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 312/547 (57%), Gaps = 41/547 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +SF  N  I+ +LET    ++   Y+ + +     PDNFT+  + K C      + G ++
Sbjct: 41  DSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQL 100

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              + + GF  DMYV   V+ ++   G +G A NVFDE   R+ VSW +LI G+VR G  
Sbjct: 101 HSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGEL 160

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A +LF  M                    Q++D                   V + NA+
Sbjct: 161 DLASKLFDQM-------------------PQVKD-------------------VVIYNAM 182

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           MD +VK G + SA  +FD M +KTV++ TTMI GY     +D ARK+FD +PE+ +V WN
Sbjct: 183 MDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWN 242

Query: 282 AIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            +IGGY Q K+ +EA+ LF EMQAT  + PD VT +  L A S  GAL  G W H F+++
Sbjct: 243 TMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQR 302

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +N +  V + TA++DMY+KCG I KA ++F EMPE+   ++ A+I G AL+G A  A+  
Sbjct: 303 KNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDL 362

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  M      PDEIT L ++SAC HGGLV+EGRK+F QM   F L+ K++HY CMVDLLG
Sbjct: 363 FLTM-AKEEKPDEITMLAVISACNHGGLVEEGRKWF-QMMRKFGLNAKIEHYGCMVDLLG 420

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L++AE LI +MP   + ++  +   AC  + ++   ER   K +EL+PQ+ G YVL
Sbjct: 421 RAGNLKQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVL 480

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L N+Y     W++ G V+ MM +   +K  GCS IE+N ++ EFI  D +HP  + I+  
Sbjct: 481 LRNLYAADKRWDDFGMVKNMMRKNEAKKEVGCSLIEINYIVSEFISGDTTHPHRQSIHLV 540

Query: 581 LVQLTRH 587
           L +L  H
Sbjct: 541 LEKLLVH 547



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 25  SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPL 84
           S ++D   K+   +   N  SWN  I G+ +  + +EA+ L+++M       PD+ T   
Sbjct: 220 SNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILS 279

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           +    +  G   LG      V +   D  + V  A++ ++  CG++  A  +FDE   + 
Sbjct: 280 VLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQ 339

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           + SWN++I+G+  +G    A+ LF  M  E  +PDE+TM+ ++SAC     +  GR+   
Sbjct: 340 VASWNAMIHGYALNGNAHAALDLFLTMAKEE-KPDEITMLAVISACNHGGLVEEGRKWFQ 398

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            + + GL   +     ++D+  + G L+ AE +  +M
Sbjct: 399 MMRKFGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNM 435


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/556 (36%), Positives = 330/556 (59%), Gaps = 6/556 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++  ++Q  +  SWN  I    ++G    A+ ++K+M      +P++ TY  +    ++ 
Sbjct: 163 RMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM--KCDVKPNSTTYINVISGFSTP 220

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            +   G +I   ++  GFD D+ V  A+I+++  CG    A  VFD+   R++VSWN +I
Sbjct: 221 EVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMI 280

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             +V +G   EA+ L++ + +E  +  + T + ++ AC+ ++ L  GR +H +I E GL 
Sbjct: 281 GCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD 340

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF---LDIARKIF 269
             V +A AL++MY KCG LE A ++F++M N+  V+ +T+I  YA  G+      ARK+F
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGAL 328
           D L  +  + WNA+I  YVQ   +  A+ +F EM  A G+KPDAVT +  L AC+ LG L
Sbjct: 401 DRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRL 460

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
            +   +H  I +     NVV+   L++MYA+CG++ +A ++F    E+  +++TA++   
Sbjct: 461 SEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF 520

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           + +G+  +A+  F EM   G+ PD++T+  IL  C HGG +++G +YF  M+ +  L+P 
Sbjct: 521 SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPT 580

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
             H++ MVDLLGRSG L +A++L+ SMP   D V W     ACR+HG + +GE AA ++ 
Sbjct: 581 ADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVY 640

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           ELDP  +  Y+ ++N+Y    MWE+   VRK MEERG++K PG S IEV+G L+EF    
Sbjct: 641 ELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGG 700

Query: 569 KSHPELEQIYDCLVQL 584
           K HP  ++I + L +L
Sbjct: 701 KYHPRTDEICEELTRL 716



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 215/443 (48%), Gaps = 41/443 (9%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           +PDN T+  +   C+S G    G  +   +    F+ D  V NA+I ++  C  L  A +
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 136 VFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           VF+  +   RN+VSWN++I  + ++G   EA+ L+  M L+ +  D VT + ++ AC+ L
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
                GREIH  +  SGL     LANAL+ MY + G +  A+ +F S+  +   S     
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS----- 175

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                                     WNA+I  + Q+     AL +F EM+   +KP++ 
Sbjct: 176 --------------------------WNAVILAHSQSGDWSGALRIFKEMKCD-VKPNST 208

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T ++ +S  S    L +G  IH  I    F+ ++V+ TAL++MY KCG+  +A +VF +M
Sbjct: 209 TYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKM 268

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R+ +++  +IG   L+G   +A+  + ++   G    + TF+ IL AC     + +GR
Sbjct: 269 KKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR 328

Query: 434 KYFAQMSSIFR-LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
              + +  + R L  ++   + +V++  + G LEEA ++  +M    D V W  L  A  
Sbjct: 329 LVHSHI--LERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGAYA 385

Query: 493 LHGNVSIGERAAMKLLELDPQDS 515
            +G      +A      L  +D+
Sbjct: 386 SNGYGKDARKARKVFDRLGSRDT 408



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 148/307 (48%), Gaps = 12/307 (3%)

Query: 12  APSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           A S LI A+ +    K+     K+   + + ++ SWN  I  +++ G    A+ ++++M 
Sbjct: 376 AWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMT 435

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
              G +PD  T+  + + CASLG       +   + +   + ++ V N +I+++  CG L
Sbjct: 436 GAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSL 495

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +F  +  + +VSW +++  F + G   EA+ LF++M LE V+PD+VT   ++  C
Sbjct: 496 EEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVC 555

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLAN---ALMDMYVKCGKLESAEEIFDSM-VNKTV 246
                L  G    ++   + L    P A+   A++D+  + G+L  A+E+ +SM      
Sbjct: 556 THGGSLEQG--WRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDP 613

Query: 247 VSCTTMIVGYAKFGFLDI----ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           V+  T +      G L++    A ++++  P     P+ A+   Y      ++  ++  +
Sbjct: 614 VAWMTFLTACRIHGKLELGEAAAERVYELDPSS-TAPYIAMSNIYAAHGMWEKVASVRKK 672

Query: 303 MQATGIK 309
           M+  G+K
Sbjct: 673 MEERGLK 679


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 322/531 (60%), Gaps = 39/531 (7%)

Query: 30  YCTKILFNVQNP-NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           Y + IL ++++  +SFS+N  +  +    K R  + +Y+  + NG + PD FT+P +FK 
Sbjct: 57  YSSVILHSIRSVLSSFSYNTLLSSYAVCDKPRMTIFVYRVFVSNGFS-PDMFTFPPVFKA 115

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           C        G +I G V K+GF  D+YV N+++H +  CG+   AC VFD+  VR++VSW
Sbjct: 116 CGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSW 175

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
             +I GF R+G  +EA+  F  M    VEP+  T +  + +  ++  L+LG+ IH  I +
Sbjct: 176 TGIITGFTRTGLYKEALDTFSKMD---VEPNLATYVCALVSSGRVGCLSLGKGIHGLILK 232

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
               +++   NAL+DMYVKC      E++ D+M                          +
Sbjct: 233 RASLISLETGNALIDMYVKC------EQLSDAMT-------------------------V 261

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGA 327
           F +L +K  V WN++I G V  +RS EA+ LF  MQ ++GIKPD       LSAC+ LGA
Sbjct: 262 FGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGA 321

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           +D G W+H ++       +  +GTA+VDMYAKCG I  AL++F+ +  +N  T+ A++GG
Sbjct: 322 VDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGG 381

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLS 446
           LA+HG   +++ YF EM+ +G  P+ +TFL IL+ACCH GLVDEGR+YF +M +  + LS
Sbjct: 382 LAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLS 441

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV-SIGERAAM 505
           PKL+HY C++DL  R+GLL+EA +LI++MP+  DV + GA+  AC+  G +  + +    
Sbjct: 442 PKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSRGTLMELPKEILD 501

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
             LE++ +DSG+YVLL+N++  +  W++  ++R++M+ +G+ K PG SSIE
Sbjct: 502 SFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKVPGSSSIE 552


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 335/589 (56%), Gaps = 41/589 (6%)

Query: 6   LISHGFAPSRLIAFCAISE-----SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           L+  G+  S +   CA+ +     + +L+   K+   + + N  +W + I  F + G  R
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +AVDL+  M+ +G   PD FT   +   CA +GL  LG +    V+K G D+D+ V  ++
Sbjct: 128 DAVDLFLDMVLSGYV-PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSL 186

Query: 121 IHVFVSC---GDLGLACNVFDESCVRNLVSWNSLINGFVRSG-FPREAIRLFRDMQLERV 176
           + ++  C   G +  A  VFD   V N++SW ++I G+V+SG   REAI LF +M   +V
Sbjct: 187 VDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQV 246

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           +P+  T   ++ ACA L D+ LG +++  + +  L     + N+L+ MY +CG +E+A  
Sbjct: 247 KPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA-- 304

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
                                        RK FD L EK +V +N I+  Y ++  S+EA
Sbjct: 305 -----------------------------RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEA 335

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
             LF+E++  G   +A T    LS  S +GA+  G  IH  I K  F  N+ +  AL+ M
Sbjct: 336 FELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISM 395

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y++CGNI  A QVF+EM + N +++T++I G A HG A  A+  F +M+  G+ P+E+T+
Sbjct: 396 YSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTY 455

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + +LSAC H GL+ EG K+F  M     + P+++HY+C+VDLLGRSG LEEA +L+ SMP
Sbjct: 456 IAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMP 515

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
             AD +V      ACR+HGN+ +G+ AA  +LE DP D   Y+LL+N++  +  WEE  +
Sbjct: 516 FKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAE 575

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           +RK M+ER + K  GCS IEV   +++F V D SHP+ ++IYD L QL 
Sbjct: 576 IRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLA 624



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 229/471 (48%), Gaps = 40/471 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW+  I  +    K  EA+  +  ML   G  P+ + +  +F+ C++     LG  IFG 
Sbjct: 9   SWSALISCYANNEKAFEAISAFFDMLE-CGFYPNEYCFTGVFRACSNKENISLGKIIFGF 67

Query: 105 VLKLG-FDVDMYVHNAVIHVFVSC-GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           +LK G F+ D+ V  A+I +FV   GDL  A  VFD    RN+V+W  +I  F + GF R
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           +A+ LF DM L    PD  T+ G+VSACA++  L+LGR+ H  + +SGL L V +  +L+
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 223 DMYVKC---GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           DMY KC   G ++ A ++FD M    V+S T +I GY + G  D                
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCD---------------- 231

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                         +EA+ LF EM    +KP+  T    L AC+ L  +  G  ++  + 
Sbjct: 232 --------------REAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K        +G +L+ MY++CGN+  A + F  + E+N ++Y  I+   A    + +A  
Sbjct: 278 KMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFE 337

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKHYSCMVDL 458
            F+E+ G G   +  TF  +LS     G + +G +  ++ + S F+    L   + ++ +
Sbjct: 338 LFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFK--SNLHICNALISM 395

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
             R G +E A Q+   M    +V+ W ++      HG  +       K+LE
Sbjct: 396 YSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALETFHKMLE 445



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 170/334 (50%), Gaps = 38/334 (11%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+LVSW++LI+ +  +    EAI  F DM      P+E    G+  AC+  E+++LG+ I
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 203 HWYISESG-LTLTVPLANALMDMYVK-CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
             ++ ++G     V +  AL+DM+VK  G LESA ++FD M ++ VV+ T MI  + + G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
           F                               S++A+ LF +M  +G  PD  T    +S
Sbjct: 125 F-------------------------------SRDAVDLFLDMVLSGYVPDRFTLSGVVS 153

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC---GNIAKALQVFHEMPERN 377
           AC+++G L  G   H  + K   +L+V +G +LVDMYAKC   G++  A +VF  MP  N
Sbjct: 154 ACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHN 213

Query: 378 SLTYTAIIGGLALHGKA-LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
            +++TAII G    G    +AI  F EM+   + P+  TF  +L AC +   +  G + +
Sbjct: 214 VMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVY 273

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           A +  + RL+      + ++ +  R G +E A +
Sbjct: 274 ALVVKM-RLASINCVGNSLISMYSRCGNMENARK 306



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 2/111 (1%)

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +R+ ++++A+I   A + KA +AIS F +M+  G  P+E  F G+  AC +   +  G+ 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEEAEQLIRSMPMAADVVVW 484
            F  +         +     ++D+  + +G LE A ++   MP   +VV W
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP-DRNVVTW 113


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 322/531 (60%), Gaps = 39/531 (7%)

Query: 30  YCTKILFNVQNP-NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           Y + IL ++++  +SFS+N  +  +    K R  +  YK  + NG + PD FT+P +FK 
Sbjct: 57  YSSVILHSIRSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFS-PDMFTFPPVFKA 115

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           C        G +I G V K+GF  D+YV N+++H +  CG+   AC VF E  VR++VSW
Sbjct: 116 CGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSW 175

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
             +I GF R+G  +EA+  F  M    VEP+  T + ++ +  ++  L+LG+ IH  I +
Sbjct: 176 TGIITGFTRTGLYKEALDTFSKMD---VEPNLATYVCVLVSSGRVGCLSLGKGIHGLILK 232

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
               +++   NAL+DMYVKC      E++ D+M                         ++
Sbjct: 233 RASLISLETGNALIDMYVKC------EQLSDAM-------------------------RV 261

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGA 327
           F +L +K  V WN++I G V  +RSKEA+ LF  MQ ++GIKPD       LSAC+ LGA
Sbjct: 262 FGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGA 321

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           +D G W+H +I       +  +GTA+VDMYAKCG I  AL++F+ +  +N  T+ A++GG
Sbjct: 322 VDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGG 381

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLS 446
           LA+HG  L+++ YF EM+ +G  P+ +TFL  L+ACCH GLVDEGR+YF +M S  + L 
Sbjct: 382 LAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLF 441

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV-SIGERAAM 505
           PKL+HY CM+DLL R+GLL+EA +L+++MP+  DV + GA+  AC+  G +  + +    
Sbjct: 442 PKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILD 501

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
             L+++ +DSG+YVLL+N++  +  W++  ++R++M+ +G+ K PG S IE
Sbjct: 502 SFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 4/251 (1%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           + L    ++   ++  +  SWN  I G +   + +EA+DL+  M  + G +PD      +
Sbjct: 253 EQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSV 312

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              CASLG    G  +  ++L  G   D ++  A++ ++  CG +  A  +F+    +N+
Sbjct: 313 LSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
            +WN+L+ G    G   E++R F +M     +P+ VT +  ++AC     ++ GR     
Sbjct: 373 FTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHK 432

Query: 206 ISESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFG-F 261
           +      L   L +   ++D+  + G L+ A E+  +M V   V  C  ++      G  
Sbjct: 433 MKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTL 492

Query: 262 LDIARKIFDDL 272
           +++ ++I D  
Sbjct: 493 MELPKEILDSF 503


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/477 (40%), Positives = 292/477 (61%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I  H+++     D++  + +I + ++   L  A  VF +    NL  +NS I GF  S  
Sbjct: 34  IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKD 93

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           P ++   +   +   + PD +T   +V AC Q   L++G + H  I   G    V + N+
Sbjct: 94  PDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNS 153

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ MY   G ++SA  +F  +    VVS T+M+ GY K G +  ARK+FD +PEK +V W
Sbjct: 154 LVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTW 213

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           + +I GY +     +A+ L+  +Q+ G+  +    V  +++C+ LGAL+ G   H +I +
Sbjct: 214 SVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILR 273

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               +N++LGTALVDMYA+CG+I KA+ VF ++P R++L++T +I G A+HG A  A+ Y
Sbjct: 274 NKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEY 333

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           FS M   GL P EITF  +LSAC HGGLV+ G + F  M   +R+ P+L+HY CMVDLLG
Sbjct: 334 FSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLG 393

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L EAE+ +  MPM  +  +WGAL  ACR+H N  I ERA   L+EL P+ SG YVL
Sbjct: 394 RAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVL 453

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           L+N+Y  +N WE    +R+MM+ERGV K PG +  E++G +++F + DK+HPE++QI
Sbjct: 454 LSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQI 510



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 208/416 (50%), Gaps = 71/416 (17%)

Query: 11  FAPSRLIAFCAISESKNL-DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           FA S LI+   IS +KNL DY  ++ + +QNPN F +N  IRGF  +    ++   Y Q 
Sbjct: 48  FAASCLIS---ISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQS 104

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF----- 124
            RNG   PDN TYP L K C   G   +G +  G +++ GFD D+YV N+++ ++     
Sbjct: 105 KRNGLV-PDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGD 163

Query: 125 ----------VSC----------------GDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
                     +SC                GD+  A  +FD+   +NLV+W+ +I+G+ ++
Sbjct: 164 IKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKN 223

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
            F  +AI L+  +Q E V  +E  M+ ++++CA L  L LG   H YI  + +T+ + L 
Sbjct: 224 SFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILG 283

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
            AL+DMY +CG ++ A  +FD +  +  +S TT+I G+A  G+                 
Sbjct: 284 TALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGY----------------- 326

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                         +++AL  F  M+  G+ P  +T    LSACS  G ++ G+ +   +
Sbjct: 327 --------------AEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 339 EKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
            K ++ +   L     +VD+  + G +A+A +  +EMP + N+  + A++G   +H
Sbjct: 373 -KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIH 427


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/575 (37%), Positives = 328/575 (57%), Gaps = 65/575 (11%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S     +R+IAFC   ES N++Y  ++   + +P+ F WN  I+G+ +       V 
Sbjct: 34  GLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVS 93

Query: 65  LYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           +Y  ML     +PD FT+P   K     + L+  G E+  H +K GFD +++V  A IH+
Sbjct: 94  MYLLML-TSNIKPDRFTFPFSLKGFTRDMALQH-GKELLNHAVKHGFDSNLFVQKAFIHM 151

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           F  CG + LA  VFD      +V+WN +++G+ R       ++ F+  +          M
Sbjct: 152 FSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNR-------VKQFKISK----------M 194

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + ++SAC++L+DL  G+ I  YI+             +  M+  CG++            
Sbjct: 195 LLVLSACSKLKDLEWGKHIFKYIN----------GGIVEHMFAACGEM------------ 232

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                              D A+ +FD++  + VV W A+I GY++      ALALF EM
Sbjct: 233 -------------------DEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREM 273

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           Q + +KPD  T V  L AC+ LGAL+ G W+   I+K +   +  +G ALVDMY KCGN+
Sbjct: 274 QMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNV 333

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA +VF EM +++  T+T +I GLA++G   +A++ FS MI   + PDEIT++G+L AC
Sbjct: 334 RKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC 393

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
               +VD+G+ +F  M+    + P + HY CMVDLLG  G LEEA ++I +MP+  + +V
Sbjct: 394 ----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIV 449

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WG+   ACR+H NV + + AA ++LEL+P++  +YVLL N+Y  S  WE   +VRK+M E
Sbjct: 450 WGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMME 509

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           RG++KTPGCS +E+NG +YEF+  D+SHP+ ++IY
Sbjct: 510 RGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 544


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 336/577 (58%), Gaps = 19/577 (3%)

Query: 14  SRLIAFCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           SR I F A+S   NLD     LFN    NPN F +N  I  F    K+ E+  LY  +L 
Sbjct: 2   SRFIYFSAVSHPDNLDLAIT-LFNHFTPNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLS 59

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           +G   PD  T   L +      + F+    +I    +  G     Y+ N +I V++  G 
Sbjct: 60  SGEC-PDKQTLLYLLQ-----AVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGL 113

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           + LA  VF++    ++VS+N +I G+ + GF  EA+RLF +M    +EPDE T++G++ +
Sbjct: 114 VRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVS 173

Query: 190 CAQLEDLNLGREIHWYISESGLTLT--VPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           C QL ++  G+ +H ++     T++  + L NAL+DMYVKC K+E A   F ++  K +V
Sbjct: 174 CGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIV 233

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S   ++ G AK G L+ AR  F  +P + +V WN+++ GY           L  +M    
Sbjct: 234 SWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEK 293

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           + PD VT +  +SA ++ GALD G W H ++ +    L+  LG+AL+DMY KCG+I +A 
Sbjct: 294 VIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERAS 353

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF E+ +++   +T +I GLA HG    A+  FSEM    + PD++TF+ +LSAC H G
Sbjct: 354 RVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSG 412

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LVD+G K F+ M+  + + P ++HY C+VDLL RSG L EA+ +I  MPM     +WGA+
Sbjct: 413 LVDQGIKVFSSMTD-YGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAM 471

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             AC+  G+V + E A+ +LL LDP++ G Y LL+N+Y  S  W  + K+R+ ME RGV+
Sbjct: 472 LNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVK 531

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHP---ELEQIYDCL 581
           KT GCSS+ V+G+++ FI  DK HP   ++  I +CL
Sbjct: 532 KTAGCSSVVVDGVVHNFISADKCHPGWVDISSILNCL 568


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 321/561 (57%), Gaps = 8/561 (1%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL-YKQMLRNGGTRPDNFTYPLLFK 87
           D    +   + +P+  S+N  +      G+   A  L +   +       + +++     
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALS 159

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA+      G ++ G V +     D+++ +A++ ++  C     A  VFD    RN+VS
Sbjct: 160 ACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVS 219

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNSLI  + ++G   EA+ LF +M      PDEVT+  ++SACA L     GR++H ++ 
Sbjct: 220 WNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMV 279

Query: 208 E-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +   L   + L NAL+DMY KCG+   A  IFDSM ++++VS T+++ GYAK   ++ A+
Sbjct: 280 KCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQ 339

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +F  + EK V+ WN +I  Y Q    +EA+ LF +++   I P   T  + L+AC  + 
Sbjct: 340 VVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIA 399

Query: 327 ALDDGIWIHRFIEKENFNLN------VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
            L  G   H  + KE F  +      V +G +LVDMY K G+I    +VF  M  R++++
Sbjct: 400 DLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS 459

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + A+I G A +G+A DA+  F  M+     PD +T +G+LSAC H GLVDEGR+YF  M+
Sbjct: 460 WNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMT 519

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
               ++P   HY+CMVDLLGR+G L+EAE+LI  MPM  D V+W +L  ACRLH NV +G
Sbjct: 520 EDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELG 579

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           E  A +L ELDPQ+SG YVLL+NMY +   W E  +VR+ M++RGV K PGCS IE+   
Sbjct: 580 EWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRK 639

Query: 561 LYEFIVRDKSHPELEQIYDCL 581
           +  F+ RDK HP   +I++ L
Sbjct: 640 MNVFLARDKRHPCRNEIHNTL 660



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 164/373 (43%), Gaps = 77/373 (20%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +LK     + ++ N ++  +   G L  A  VFDE  +RN  S+N+L++ + R G P EA
Sbjct: 43  ILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEA 102

Query: 165 IRLFRDMQLERVEPDEVTMIGMV------------------------------------- 187
             LF  +     +PD+ +   +V                                     
Sbjct: 103 RALFEAIP----DPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASAL 158

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SACA  +D   G ++H  ++ S     V + +AL+DMY KC + E A  +FD+M  + VV
Sbjct: 159 SACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVV 218

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S                               WN++I  Y Q     EAL LF EM A G
Sbjct: 219 S-------------------------------WNSLITCYEQNGPVGEALMLFVEMMAAG 247

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKA 366
             PD VT    +SAC+ L A  +G  +H  + K +    ++VL  ALVDMYAKCG   +A
Sbjct: 248 FSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEA 307

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
             +F  MP R+ ++ T+I+ G A      DA   FS+M+   +    I +  +++A    
Sbjct: 308 RCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQN 363

Query: 427 GLVDEGRKYFAQM 439
           G  +E  + F Q+
Sbjct: 364 GEEEEAIRLFVQL 376



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 136/284 (47%), Gaps = 2/284 (0%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           +L+  R  H  I +S +     L N L+  Y + G+L  A  +FD +  +   S   ++ 
Sbjct: 32  NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR--SKEALALFHEMQATGIKPDA 312
            YA+ G  D AR +F+ +P+     +NA++    +  R  + +AL     M A     +A
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNA 151

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
            +    LSAC+       G  +H  + +     +V + +ALVDMYAKC     A +VF  
Sbjct: 152 YSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDA 211

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           MPERN +++ ++I     +G   +A+  F EM+  G  PDE+T   ++SAC       EG
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREG 271

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           R+  A M    RL   +   + +VD+  + G   EA  +  SMP
Sbjct: 272 RQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 123/241 (51%), Gaps = 13/241 (5%)

Query: 13  PSRLIA-----FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           PSR I          ++S N++    +   +   N  +WNV I  + + G+  EA+ L+ 
Sbjct: 315 PSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFV 374

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF------DVDMYVHNAVI 121
           Q+ R+    P ++TY  +   C ++    LG +   HVLK GF      + D++V N+++
Sbjct: 375 QLKRD-SIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 433

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            +++  G +     VF+    R+ VSWN++I G+ ++G  ++A+ LF  M      PD V
Sbjct: 434 DMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSV 493

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           TMIG++SAC     ++ GR   H    + G+T +      ++D+  + G L+ AEE+ + 
Sbjct: 494 TMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIND 553

Query: 241 M 241
           M
Sbjct: 554 M 554


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/556 (36%), Positives = 331/556 (59%), Gaps = 6/556 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++  ++Q  +  SWN  I    ++G    A+ ++K+M      +P++ TY  +    ++ 
Sbjct: 163 RMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM--KCDMKPNSTTYINVISGFSTP 220

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            +   G +I   ++  GFD D+ V  A+I+++  CG    A  VFD+   R++VSWN +I
Sbjct: 221 EVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMI 280

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             +V++G   EA+ L++ + +E  +  + T + ++ AC+ ++ L  GR +H +I E GL 
Sbjct: 281 GCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD 340

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF---LDIARKIF 269
             V +A AL++MY KCG LE A ++F++M N+  V+ +T+I  YA  G+      ARK+F
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGAL 328
           D L  +  + WNA+I  YVQ   +  A+ +F EM  A G+KPDAVT +  L AC+ LG L
Sbjct: 401 DRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRL 460

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
            +   +H  I +     NVV+   L++MYA+CG++ +A ++F    E+  +++TA++   
Sbjct: 461 SEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF 520

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           + +G+  +A+  F EM   G+ PD++T+  IL  C HGG +++G +YF  M+ +  L+P 
Sbjct: 521 SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPT 580

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
             H++ MVDLLGRSG L +A++L+ SMP   D V W     ACR+HG + +GE AA ++ 
Sbjct: 581 ADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVY 640

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           ELDP  +  Y+ ++N+Y    MWE+   VRK MEERG++K PG S IEV+G L+EF    
Sbjct: 641 ELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGG 700

Query: 569 KSHPELEQIYDCLVQL 584
           K HP  ++I + L +L
Sbjct: 701 KYHPRTDEICEELTRL 716



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 226/526 (42%), Gaps = 111/526 (21%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           +PDN T+  +   C+S G    G  +   +    F+ D  V NA+I ++  C  L  A +
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 136 VFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           VF+  +   RN+VSWN++I  + ++G   EA+ L+  M L+ +  D VT + ++ AC+ L
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
                GREIH  +  SGL     LANAL+ MY + G +  A+ +F S+  +   S   +I
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 254 VGYAKFGFLDIARKIFDD------------------------LPEKY------------- 276
           + +++ G    A +IF +                        LPE               
Sbjct: 181 LAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDS 240

Query: 277 -VVPWNAIIGGYVQAKRSKEALALFHEMQA------------------------------ 305
            +V   A+I  Y +   S EA  +F +M+                               
Sbjct: 241 DLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLD 300

Query: 306 -TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             G K    T V  L ACS + AL  G  +H  I +   +  V + TALV+MYAKCG++ 
Sbjct: 301 MEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALD---------------------------- 396
           +A +VF+ M  R+++ ++ +IG  A +G   D                            
Sbjct: 361 EARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQ 420

Query: 397 ------AISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
                 A+  F EM G  GL PD +TF+ +L AC   G + E +   AQ+S    L   +
Sbjct: 421 NGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES-ELESNV 479

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              + ++++  R G LEEAE+L  +      VV W A+  A   +G
Sbjct: 480 VVTNTLINMYARCGSLEEAERLF-AAAKEKTVVSWTAMVAAFSQYG 524



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 146/305 (47%), Gaps = 8/305 (2%)

Query: 12  APSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           A S LI A+ +    K+     K+   + + ++  WN  I  +++ G    A+ ++++M 
Sbjct: 376 AWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMT 435

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
              G +PD  T+  + + CASLG       +   + +   + ++ V N +I+++  CG L
Sbjct: 436 GAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSL 495

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +F  +  + +VSW +++  F + G   EA+ LF++M LE V+PD+VT   ++  C
Sbjct: 496 EEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVC 555

Query: 191 AQLEDLNLGREIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVS 248
                L  G      ++E  GL  T     A++D+  + G+L  A+E+ +SM      V+
Sbjct: 556 THGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVA 615

Query: 249 CTTMIVGYAKFGFLDI----ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             T +      G L++    A ++++  P     P+ A+   Y      ++  ++  +M+
Sbjct: 616 WMTFLTACRIHGKLELGEAAAERVYELDPSS-TAPYIAMSNIYAAHGMWEKVASVRKKME 674

Query: 305 ATGIK 309
             G+K
Sbjct: 675 ERGLK 679



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           +PD VT +  L +CS  G + +G  +H  I    F  + ++G AL+ MY KC ++  A  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 369 VFHEMP--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH- 425
           VF  M   +RN +++ A+I   A +G + +A+  +  M   GL  D +TF+ +L AC   
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 426 -GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
             G     R +++ + S   L+  L      V +  R G + +A+++ +S+    D   W
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANAL------VTMYARFGSVGDAKRMFQSL-QTRDETSW 176

Query: 485 GALFFACRLHGNVS 498
            A+  A    G+ S
Sbjct: 177 NAVILAHSQSGDWS 190


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/445 (42%), Positives = 288/445 (64%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +F +    NL  +N++I G   S  P +A   +   Q + + PD +T   +V +C +
Sbjct: 72  ASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTK 131

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L  +++G + H +I + G    V + N+L+ MY   G  E+A  IF  M    VVS T+M
Sbjct: 132 LHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSM 191

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I G+ K G ++ ARK+FD +PEK +V W+ +I GY Q     +A+ LF  +Q+ G++ + 
Sbjct: 192 IRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANE 251

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
              V  +S+C+ LGAL+ G   H ++ K    LN++LGTALVDMYA+CG+I KA+ VF +
Sbjct: 252 TVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFED 311

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           +PER++L++TA+I GLA+HG +  ++ YF+ M+  GL P +ITF  +LSAC HGGLV+ G
Sbjct: 312 LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERG 371

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            + F  M    R+ P+L+HY CMVDLLGR+G LEEAE+ +  MP+  +  VWGAL  ACR
Sbjct: 372 FQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACR 431

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           +H N  IGER    L++L PQ SG YVLL+N+Y ++  WE+  ++R+MM+ +G++K PG 
Sbjct: 432 IHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGH 491

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQI 577
           S IE++G +++F + D SHPE+++I
Sbjct: 492 SLIELDGRVHKFTIGDSSHPEMDKI 516



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 217/456 (47%), Gaps = 69/456 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKN--LDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           M  T +I   FA SRLIAFC    S    +DY ++I   +QNPN F +N  IRG   +  
Sbjct: 40  MIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKN 99

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             +A   Y Q  R G   PDN T+P L K C  L    +G +  GH++K GF+ D+YV N
Sbjct: 100 PDQAFHFYVQSQRQG-LLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQN 158

Query: 119 AVIHVFVS-------------------------------CGDLGLACNVFDESCVRNLVS 147
           +++H++ +                               CGD+  A  +FD+   +NLV+
Sbjct: 159 SLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVT 218

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W+++I+G+ ++    +A+ LF+ +Q + V  +E  M+ ++S+CA L  L LG   H Y+ 
Sbjct: 219 WSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVV 278

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++G+TL + L  AL+DMY +CG ++ A  +F+ +  +  +S T +I G A  G+      
Sbjct: 279 KNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGY------ 332

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                    S+ +L  F  M   G+ P  +T    LSACS  G 
Sbjct: 333 -------------------------SERSLKYFATMVEAGLTPRDITFTAVLSACSHGGL 367

Query: 328 LDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAII 385
           ++ G  I   +++++     +     +VD+  + G + +A +   +MP + N+  + A++
Sbjct: 368 VERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALL 427

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           G   +H  A   I      I + L+P    +  +LS
Sbjct: 428 GACRIHKNA--EIGERVGKILIQLLPQHSGYYVLLS 461



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 152/361 (42%), Gaps = 68/361 (18%)

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +D A +IF  +    +  +NA+I G+  +K   +A   + + Q  G+ PD +T    + 
Sbjct: 68  LIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVK 127

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA---------------------- 358
           +C++L  +  G   H  I K  F  +V +  +LV MYA                      
Sbjct: 128 SCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVS 187

Query: 359 ---------KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
                    KCG++  A ++F +MPE+N +T++ +I G A +     A+  F  +   G+
Sbjct: 188 WTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGV 247

Query: 410 MPDEITFLGILSACCHGGLVDEGRK---YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             +E   + ++S+C H G ++ G +   Y  +      ++  L   + +VD+  R G ++
Sbjct: 248 RANETVMVSVISSCAHLGALELGERAHDYVVKNG----MTLNLILGTALVDMYARCGSID 303

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHG--NVSIGERAAMKLLELDPQDSGIYVLLANM 524
           +A  +   +P   D + W AL     +HG    S+   A M    L P+D     +L+  
Sbjct: 304 KAVWVFEDLP-ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSAC 362

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD-KSHPELEQIYDCLVQ 583
                     G V     ERG +             ++E + RD +  P LE  Y C+V 
Sbjct: 363 -------SHGGLV-----ERGFQ-------------IFESMKRDHRVEPRLEH-YGCMVD 396

Query: 584 L 584
           L
Sbjct: 397 L 397



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 16/293 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++   K+   +   N  +W+  I G+ +     +AV+L+K +L++ G R +      + 
Sbjct: 200 DVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK-VLQSQGVRANETVMVSVI 258

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   LG     +V+K G  +++ +  A++ ++  CG +  A  VF++   R+ +
Sbjct: 259 SSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTL 318

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW +LI G    G+   +++ F  M    + P ++T   ++SAC+    +  G +I   +
Sbjct: 319 SWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESM 378

Query: 207 S-ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY------AKF 259
             +  +   +     ++D+  + GKLE AE     M  K        ++G       A+ 
Sbjct: 379 KRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEI 438

Query: 260 GFLDIARKIFDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           G   + + +   LP+    YV+  N     Y  AK  ++   +   M+A G+K
Sbjct: 439 G-ERVGKILIQLLPQHSGYYVLLSNI----YANAKEWEKVTEMRQMMKAKGLK 486



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 103/247 (41%), Gaps = 40/247 (16%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL----VDMYAKCGNIAKALQVFHEMP 374
           L  CS L  L     IH ++ + +   +V   + L    VD  +    I  A ++F ++ 
Sbjct: 24  LETCSDLTHLK---IIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC----------- 423
             N   + A+I G +       A  ++ +    GL+PD +TF  ++ +C           
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140

Query: 424 CHGGLVDEG--RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
            HG ++  G  +  + Q S              +V +    G  E A  + + M    DV
Sbjct: 141 AHGHIIKHGFEKDVYVQNS--------------LVHMYATFGDTEAATLIFQRM-YYVDV 185

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-YVLLANMYRDSNMWEEAGKVRKM 540
           V W ++       G+V     +A KL +  P+ + + +  + + Y  +N +++A ++ K+
Sbjct: 186 VSWTSMIRGFNKCGDVE----SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKV 241

Query: 541 MEERGVE 547
           ++ +GV 
Sbjct: 242 LQSQGVR 248


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/476 (43%), Positives = 301/476 (63%), Gaps = 16/476 (3%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMV 187
           DL  A  +F      N  S+N+LI     S  P +A+ +F +M  +  VEP+  T   + 
Sbjct: 60  DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 119

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF--------- 238
            AC + E L  GR++H    + GL     + + ++ MY+ CG +E A  +F         
Sbjct: 120 KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 179

Query: 239 ------DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
                    V+  VV    MI GY + G L++AR +FD++P++ VV WN +I GY Q+  
Sbjct: 180 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGH 239

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            KEA+ +F EMQ   + P+ VT V  L A S+LGAL+ G W+H +  + N  ++ VLG+A
Sbjct: 240 FKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSA 299

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMYAKCG+I KALQVF  +P+RN +T++ II GLA+HG+A D + +F +M   G+MP 
Sbjct: 300 LIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 359

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           ++T++G+LSAC H GLV+EGR +F  M  +  L P+++HY CMVDLLGR+GLLEE+E+LI
Sbjct: 360 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 419

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
            +MP+  D V+W AL  AC++HGNV +G+R A  L+EL P DSG YV L+N+Y     WE
Sbjct: 420 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 479

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
              KVR MM+E  V K PGCS IE++G+++EF+V D SHP+ ++I+  L +++R+ 
Sbjct: 480 GVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNL 535



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 209/440 (47%), Gaps = 79/440 (17%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T  I    A + L+ F A+S+ ++LDY  KI  ++  PN FS+N  IR   E+    
Sbjct: 34  MIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPC 93

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ ++ +M+ +    P+ FT+P +FK C        G ++ G  +K G D D +V + V
Sbjct: 94  DALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNV 153

Query: 121 IHVFVSC----------------------------------------------GDLGLAC 134
           + +++SC                                              G+L +A 
Sbjct: 154 VRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVAR 213

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
           N+FDE   R++VSWN +I G+ +SG  +EA+ +FR+MQ+  V P+ VT++ ++ A ++L 
Sbjct: 214 NLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLG 273

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L LG+ +H Y   + + +   L +AL+DMY KCG +E A ++F+ +  + VV+ +T+I 
Sbjct: 274 ALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIA 333

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G A  G                               R+K+ L  F +M+  G+ P  VT
Sbjct: 334 GLAMHG-------------------------------RAKDTLDHFEDMERAGVMPSDVT 362

Query: 315 TVHCLSACSQLGALDDGIW-IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
            +  LSACS  G +++G W     +        +     +VD+  + G + ++ ++   M
Sbjct: 363 YIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNM 422

Query: 374 P-ERNSLTYTAIIGGLALHG 392
           P + + + + A++G   +HG
Sbjct: 423 PIKPDDVIWKALLGACKMHG 442


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/518 (39%), Positives = 316/518 (61%), Gaps = 15/518 (2%)

Query: 84  LLFKVCASLGLR-FLGYEIFGHV-------LKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           L+    A + +R F G+    H+       L+LG D D Y+ N V+    + G+   +  
Sbjct: 4   LILNKSAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHR 63

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +F ++   N+  +N++I+G V +   +E+I ++  M+ E + PD  T   ++ ACA+L D
Sbjct: 64  IFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLD 123

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
             LG ++H  + ++G      +  +L+ +Y KCG +++A ++FD +  K V + T +I G
Sbjct: 124 SKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISG 183

Query: 256 YAKFG----FLDIARK---IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
           Y   G     +D+ R+   +FD + EK +V W+++I GY      KEAL LF +M   G 
Sbjct: 184 YIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGF 243

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           +PD    V  L AC++LGAL+ G W    +++  F  N VLGTAL+DMYAKCG +  A +
Sbjct: 244 RPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWE 303

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF  M +++ + + A I GLA+ G    A   F +M   G+ PD  TF+G+L AC H GL
Sbjct: 304 VFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGL 363

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           VDEGR+YF  M  +F L+P+++HY CMVDLLGR+G L+EA QL++SMPM A+ +VWGAL 
Sbjct: 364 VDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALL 423

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
             CRLH +  + E    +L+ L+P +SG YVLL+N+Y  S+ WE+A K+R +M ERG++K
Sbjct: 424 GGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKK 483

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            PG S IEV+G+++EF+V D SHP  E+IY  L +L +
Sbjct: 484 VPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVK 521



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 74/406 (18%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N +Y  +I    + PN F +N  I G +     +E++++Y  M R  G  PD+FT+P L 
Sbjct: 57  NTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSM-RKEGLSPDSFTFPFLL 115

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG--------------- 131
           K CA L    LG ++ G V+K G + D +V+ +++ ++  CG +                
Sbjct: 116 KACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVA 175

Query: 132 -----------------------LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF 168
                                   AC+VFD    +++VSW+S+I G+  +G P+EA+ LF
Sbjct: 176 AWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLF 235

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
             M  E   PD   M+G++ ACA+L  L LG      +  +       L  AL+DMY KC
Sbjct: 236 FKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKC 295

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G+++SA E+F  M  K +V                                WNA I G  
Sbjct: 296 GRMDSAWEVFRGMRKKDIVV-------------------------------WNAAISGLA 324

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
            +   K A  LF +M+ +GI+PD  T V  L AC+  G +D+G      +E+  F L   
Sbjct: 325 MSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV-FTLTPE 383

Query: 349 LG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           +     +VD+  + G + +A Q+   MP E N++ + A++GG  LH
Sbjct: 384 IEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH 429


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 322/580 (55%), Gaps = 36/580 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           + Y  K+      PNSF W   I GF E  +   A   + +M R     P NFT   + K
Sbjct: 52  VSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHREN-IVPLNFTIASVLK 110

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             + LG    G  ++G  ++ G++ D+ V N +I +F+ CG++G A  +FDE   R+ VS
Sbjct: 111 AVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVS 170

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS+I G+  +G    A +LF  M+    E + ++   M+    +  DL   R +   + 
Sbjct: 171 WNSMITGYGNNGRVDIARKLFDRME----ERNVISWTSMIQGYVKAGDLLEARVLFERMP 226

Query: 208 ESGLTLTVPLANALMDM---------------------------YVKCGKLESAEEIFDS 240
           E  L     + +A M +                             K G++++A+E FD 
Sbjct: 227 EKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDR 286

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V S   +I GY K G +D AR +FD +PEK +V W+ +IGGY +      +L L+
Sbjct: 287 MQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLY 346

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENF-NLNVVLGTALVDMYA 358
              +  GIKPD    +  +SACSQLG  D     I  F+    F NL VV  T+L+DMYA
Sbjct: 347 KTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVV--TSLIDMYA 404

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCGNI +A+QVF  + +++   Y+ +I   A HG + DAIS FSEM    + PD + FLG
Sbjct: 405 KCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLG 464

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L+AC HGGLV EGR+ F QM   + + P  KHY+CMVD+LGR+G LEEA  LI SMP+A
Sbjct: 465 VLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVA 524

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            +  VWGAL  ACR+H NV + E AA +L +++P +SG YVLL N+Y D+  W++  KVR
Sbjct: 525 PNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVR 584

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            M+ E  V K  G S IE+  +++EF++ DKSH + E+I+
Sbjct: 585 AMIRENRVRKNRGSSWIELGSVIHEFVMGDKSHFDSERIF 624



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 207/459 (45%), Gaps = 31/459 (6%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N ++ ++   G +  A  +FDE+   N   W +LI+GF  +     A   F  M  E + 
Sbjct: 40  NKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIV 99

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P   T+  ++ A ++L  +  G  ++      G    + + N +++++++CG++ SA ++
Sbjct: 100 PLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQM 159

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M  +  VS  +MI GY   G +DIARK+FD + E+ V+ W ++I GYV+A    EA 
Sbjct: 160 FDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEAR 219

Query: 298 ALFHEMQATGIKP-----DAVTTVHCLSACSQLGAL----DDGIWIHRF----------I 338
            LF  M    +        A  +V  L A   L  L    D G W               
Sbjct: 220 VLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDA 279

Query: 339 EKENFN----LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
            KE F+     NV     ++D Y K G++  A  VF +MPE+N + ++ +IGG A  G  
Sbjct: 280 AKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHP 339

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM--SSIFRLSPKLKHY 452
             ++  +      G+ PDE   LGI+SAC   G+ D            S+F   P L+  
Sbjct: 340 YSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLF---PNLQVV 396

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG--NVSIGERAAMKLLEL 510
           + ++D+  + G +E A Q+   M    D+  +  +  A   HG    +I   + M+   +
Sbjct: 397 TSLIDMYAKCGNIERAVQVFE-MVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANI 455

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
            P       +L        + E     R+M++E G++ +
Sbjct: 456 KPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPS 494



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 103/217 (47%), Gaps = 4/217 (1%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPL-L 85
           ++D    +   +   N  +W+  I G+ +TG    ++ LYK   +  G +PD  T+ L +
Sbjct: 307 DVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKT-FKEQGIKPDE-TFALGI 364

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              C+ LG+      +    +      ++ V  ++I ++  CG++  A  VF+    ++L
Sbjct: 365 ISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDL 424

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HW 204
             ++++I  F   G   +AI LF +MQ   ++PD V  +G+++AC     +  GR +   
Sbjct: 425 HCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQ 484

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            I E G+  +      ++D+  + G LE A  +  SM
Sbjct: 485 MIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSM 521


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 337/579 (58%), Gaps = 37/579 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL   GF  ++LI   A S   ++ +  ++  ++  P  F WN  IRG+      +
Sbjct: 44  LLVLGLQFSGFLITKLIH--ASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQ 101

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ +Y +M +     PD+FT+P L K C  L    +G  +   V +LGF+ D++V N +
Sbjct: 102 DALLMYSKM-QLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGL 160

Query: 121 IHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           I ++  C  LG A  VF+   +  R +VSW ++++ + ++G P EA+ +F  M+   V+P
Sbjct: 161 IALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKP 220

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D V ++ +++A   L+DL  GR IH  + + GL     L  +L  MY KCG++ +A    
Sbjct: 221 DCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATA---- 276

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                                      + +FD +    ++ WNA+I GY +   +K+A+ 
Sbjct: 277 ---------------------------KILFDKMKSPNLILWNAMISGYAKNGFAKDAID 309

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LFHEM    ++PD ++    +SAC+Q+G+L+   W+  ++ + ++  +V + +AL+DM+A
Sbjct: 310 LFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFA 369

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG++  A  VF    +R+ + ++A+I G  LHG+A +AIS +  M   G+ P+++TFLG
Sbjct: 370 KCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLG 429

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC H G+V EG  +F +M+   +++P+ +HY+C++DLLGR+G L++A ++I+ MP+ 
Sbjct: 430 LLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
             V VWGAL  AC+ H +V +G+ AA +L  +DP ++G YV L+N+Y  + +W+   +VR
Sbjct: 489 PGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
             M+E+G+ K  GCS +EV G L  F V DKSHP  E+I
Sbjct: 549 VRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEI 587



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 202/447 (45%), Gaps = 41/447 (9%)

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
           N G   D+F   L+        LR    +I   +L LG     ++   +IH   S GD+ 
Sbjct: 15  NSGIHSDSFYASLIDSSTHKAQLR----QIHARLLVLGLQFSGFLITKLIHASSSYGDIT 70

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
            A  VFD+     +  WN++I G+ R+   ++A+ ++  MQL RV PD  T   ++ AC 
Sbjct: 71  FARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACG 130

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS--MVNKTVVSC 249
            L  L +GR +H  +   G    V + N L+ +Y KC +L  A  +F+   +  +T+VS 
Sbjct: 131 GLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSW 190

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T ++  YA+ G                                  EAL +F +M+   +K
Sbjct: 191 TAIVSAYAQNG-------------------------------EPVEALEIFSQMRKMDVK 219

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD V  V  L+A + L  L+ G  IH  + K        L  +L  MYAKCG +A A  +
Sbjct: 220 PDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKIL 279

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F +M   N + + A+I G A +G A DAI  F EMI   + PD I+    +SAC   G +
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           ++ R +  +  S       +   S ++D+  + G +E A  +     +  DVVVW A+  
Sbjct: 340 EQAR-WMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVF-DRTLDRDVVVWSAMIV 397

Query: 490 ACRLHGNV--SIGERAAMKLLELDPQD 514
              LHG    +I    AM+   + P D
Sbjct: 398 GYGLHGQAREAISLYRAMERDGVHPND 424


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 319/552 (57%), Gaps = 11/552 (1%)

Query: 35  LFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +F + +P  N + WN  IR     G   EA+ LY +  R    +PD +T+P +   CA L
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGL 128

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +   I   VL +GF  D+Y+ NA+I ++    DL  A  VF+E  +R++VSWNSLI
Sbjct: 129 LDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 153 NGFVRSGFPREA-------IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           +G+  +G+  EA       I+LF +M + + +PD +T+  ++ AC  L DL  G+ +H Y
Sbjct: 189 SGYNANGYWNEALEIYYQSIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDY 247

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           +  SG       +N L++MY KCG L +++E+F  M  K  VS  +MI  Y + G +  +
Sbjct: 248 MITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDS 307

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
            K+F+++  + ++ WN II   V ++     L +   M+  G+ PD  T +  L  CS L
Sbjct: 308 LKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 367

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
            A   G  IH  I K     +V +G  L++MY+KCG++  + QVF  M  ++ +T+TA+I
Sbjct: 368 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 427

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
               ++G+   A+  F EM   G++PD + F+ I+ AC H GLV+EG  YF +M   +++
Sbjct: 428 SACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKI 487

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P+++HY+C+VDLL RS LL++AE  I SMP+  D  +WGAL  ACR+ G+  I ER + 
Sbjct: 488 EPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSE 547

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +++EL+P D+G YVL++N+Y     W++   +RK ++ RG++K PGCS +E+   +Y F 
Sbjct: 548 RIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFG 607

Query: 566 VRDKSHPELEQI 577
              K   + E++
Sbjct: 608 TGTKFFEQFEEV 619



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 190/433 (43%), Gaps = 71/433 (16%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR-----NGGTRPDNFT 81
           +LD   K+   +   +  SWN  I G+   G   EA+++Y Q ++         +PD  T
Sbjct: 165 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLT 224

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              + + C  LG    G  +  +++  G++ D    N +I+++  CG+L  +  VF    
Sbjct: 225 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 284

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQ----------------------------- 172
            ++ VSWNS+IN ++++G   +++++F +M+                             
Sbjct: 285 CKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISR 344

Query: 173 --LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
              E V PD  TM+ ++  C+ L     G+EIH  I + GL   VP+ N L++MY KCG 
Sbjct: 345 MRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGS 404

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           L ++ ++F  M  K VV+ T +I     +G                              
Sbjct: 405 LRNSFQVFKLMKTKDVVTWTALISACGMYG------------------------------ 434

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVL 349
              K+A+  F EM+A GI PD V  V  + ACS  G +++G+ + HR  +       +  
Sbjct: 435 -EGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 493

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
              +VD+ ++   + KA      MP + +S  + A++    + G   +     SE I + 
Sbjct: 494 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDT-EIAERVSERI-IE 551

Query: 409 LMPDEITFLGILS 421
           L PD+  +  ++S
Sbjct: 552 LNPDDTGYYVLVS 564


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 314/546 (57%), Gaps = 31/546 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++ + +Q  +  +W+  I   ++TG   EA+ L+++M +N   +P+  T   +   CA L
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM-QNQKMKPNRVTLMSILPACADL 443

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L  LG  I    +K   D D+    A++ ++  CG    A   F+    R++V+WNSLI
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           NG+ + G P  AI +F  ++L  + PD  TM+G+V ACA L DL+ G  IH  I + G  
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE 563

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               + NAL+DMY KCG L SAE +F    NKT  +                        
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLF----NKTDFT------------------------ 595

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K  V WN II  Y+Q   +KEA++ FH+M+     P++VT V  L A + L A  +G+
Sbjct: 596 --KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             H  I +  F  N ++G +L+DMYAKCG +  + ++F+EM  ++++++ A++ G A+HG
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
               AI+ FS M    +  D ++F+ +LSAC H GLV+EGRK F  MS  + + P L+HY
Sbjct: 714 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHY 773

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR+GL +E    I+ MP+  D  VWGAL  +CR+H NV +GE A   L++L+P
Sbjct: 774 ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           ++   +V+L+++Y  S  W +AGK R  M + G++KTPGCS +E+   ++ F V DKSHP
Sbjct: 834 RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHP 893

Query: 573 ELEQIY 578
           +LE ++
Sbjct: 894 QLESMH 899



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 262/527 (49%), Gaps = 42/527 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  ++D   ++   + + +  SW   + G+   G   E ++L+ +M + G  R +  + 
Sbjct: 274 SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSA 332

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
              F   A       G EI G  L+   D D+ V   ++ ++  CG+   A  +F     
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+LV+W+++I   V++G+P EA+ LF++MQ ++++P+ VT++ ++ ACA L  L LG+ I
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +  ++ +   +    AL+ MY KCG   +A   F+ M ++ +V+  ++I GYA+ G  
Sbjct: 453 HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG-- 510

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                           P+NAI               +F++++ + I PDA T V  + AC
Sbjct: 511 ---------------DPYNAI--------------DMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTY 381
           + L  LD G  IH  I K  F  +  +  AL+DMYAKCG++  A  +F++    ++ +T+
Sbjct: 542 ALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
             II     +G A +AIS F +M      P+ +TF+ +L A  +     EG  + A +  
Sbjct: 602 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           +  LS  L   S ++D+  + G L+ +E+L   M    D V W A+     +HG+   G+
Sbjct: 662 MGFLSNTLVGNS-LIDMYAKCGQLDYSEKLFNEMDH-KDTVSWNAMLSGYAVHGH---GD 716

Query: 502 RA-AMKLLELDPQ---DSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           RA A+  L  + Q   DS  +V + +  R + + EE  K+   M ++
Sbjct: 717 RAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDK 763



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 224/474 (47%), Gaps = 43/474 (9%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           D    +  +  NP+   WN  IR +  + +  EA+++Y  M+  G   PD +T+  + K 
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG-LEPDKYTFTFVLKA 138

Query: 89  CA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           C  +L L+  G    G + + G + D+++   ++ ++   GDL  A  VFD+   R++V+
Sbjct: 139 CTGALNLQ-EGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA 197

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I G  +S  P EA+  FR MQL  VEP  V+++ +     +L ++ L R IH Y+ 
Sbjct: 198 WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
               +  V  +N L+D+Y KCG +                               D+AR+
Sbjct: 258 RRDFSSAV--SNGLIDLYSKCGDV-------------------------------DVARR 284

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD + ++  V W  ++ GY       E L LF +M+   ++ + V+ V    A ++   
Sbjct: 285 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETID 344

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  IH    ++  + ++++ T L+ MYAKCG   KA Q+F  +  R+ + ++AII  
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           L   G   +A+S F EM    + P+ +T + IL AC    L+  G+      +    +  
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC-FTVKADMDS 463

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            L   + +V +  + G    A      M  + D+V W +L     ++G   IG+
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSL-----INGYAQIGD 511



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 4/240 (1%)

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T +I  Y+ F   D+AR +FD  P    + WN++I  Y ++K+  EAL +++ M   G
Sbjct: 65  SITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 124

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++PD  T    L AC+    L +G+W H  I++     +V +G  LVDMY+K G++ +A 
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF +MP+R+ + + A+I GL+      +A+ +F  M  VG+ P  ++ L +    C   
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            ++  R        +FR        + ++DL  + G ++ A ++   M +  D V WG +
Sbjct: 245 NIELCRSIHGY---VFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTM 300


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/547 (37%), Positives = 315/547 (57%), Gaps = 34/547 (6%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           N  S  WN  +R   +  +  +A+ LY QMLR+G  RP+ FT+P   K CA+L L  LG 
Sbjct: 2   NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHG-DRPNAFTFPFALKSCAALSLPILGS 60

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VRNL-VSWNSLINGFVR 157
           +  G + K+G   + +V   +I ++     +  A  VF+E+   R L V +N+L++G+V 
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 120

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +    +A+ LFR M  E V  + VT++G++ AC    +L LG  +H    + G    V +
Sbjct: 121 NSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 180

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N  + MY+KC                               G ++ A+K+FD++P K +
Sbjct: 181 VNCFITMYMKC-------------------------------GSVNYAQKLFDEMPVKGL 209

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + WNA++ GY Q   +   L L+  M   G+ PD VT V  LS+C+ LGA   G  +   
Sbjct: 210 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 269

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           ++   F  N  L  AL++MYA+CGN+ KA  VF  MPER  +++TAIIGG  +HG    A
Sbjct: 270 MQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 329

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F EMI  G+ PD   F+ +LSAC H GL D+G +YF  M   ++L P  +HYSCMVD
Sbjct: 330 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 389

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L+EA+ LI SMP+  D  VWGAL  AC++H NV + E A  +++EL+P++ G 
Sbjct: 390 LLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGY 449

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLL+N+Y ++N  +   ++R MM+E+ ++K PGCS +E+ G ++ FIV D++H + ++I
Sbjct: 450 YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEI 509

Query: 578 YDCLVQL 584
           Y  L +L
Sbjct: 510 YRVLEEL 516



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 17/317 (5%)

Query: 7   ISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           + +GF     +  C I+   +  +++Y  K+   +      SWN  + G+ + G     +
Sbjct: 170 LKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVL 229

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           +LY+ M  N G  PD  T   +   CA+LG + +G+E+   +   GF  + +++NA+I++
Sbjct: 230 ELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINM 288

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG+L  A  VFD    R LVSW ++I G+   G    A++LF++M    +EPD    
Sbjct: 289 YARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAF 348

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM-DMYVKCGKLESAEEIFDSMV 242
           + ++SAC+     + G E    +  +      P   + M D+  + G+L+ A+ + +SM 
Sbjct: 349 VCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 408

Query: 243 NKTVVSCTTMIVGYAKF-GFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKRSK 294
            K   +    ++G  K    +++A   F+ + E  + P N  IG YV        A  SK
Sbjct: 409 IKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPEN--IGYYVLLSNIYSNANNSK 464

Query: 295 EALALFHEMQATGIKPD 311
             L +   M+   +K D
Sbjct: 465 GVLRIRIMMKEKKLKKD 481


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/547 (39%), Positives = 309/547 (56%), Gaps = 66/547 (12%)

Query: 1   MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  TGL +  +A S+LI FC +S     L Y   +   +Q PN   WN   RG   +   
Sbjct: 10  MIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDP 69

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY  M+ + G  P+ +T+P L K CA       G +I GHVLKLG+D+D+YVH +
Sbjct: 70  VSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 128

Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
           +I ++V  G L  A  VFD+S                                V+++VSW
Sbjct: 129 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSW 188

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+  +G  +EA+ LF+DM    V PDE TM+ +VSACAQ   + LGR++H +I +
Sbjct: 189 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 248

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    + + NAL+D+Y KCG++E+A              C                  +
Sbjct: 249 HGFGSNLKIVNALIDLYSKCGEVETA--------------C-----------------GL 277

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ L  K V+ WN +IGGY      KEAL LF EM  +G  P+ VT +  L AC+ LGA+
Sbjct: 278 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 337

Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           D G WIH +I K  +       L T+L+DMYAKCG+I  A QVF  M  R+  ++ A+I 
Sbjct: 338 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIF 397

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A+HGKA  A   FS+M   G+ PD+ITF+G+LSAC H G++D GR  F  MS  ++++
Sbjct: 398 GFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKIT 457

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PKL+HY CM+DLLG  GL +EA+++IR+MPM  D V+W +L  AC++H NV +GE  A  
Sbjct: 458 PKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQN 517

Query: 507 LLELDPQ 513
           L++++P+
Sbjct: 518 LIKIEPE 524



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 216/388 (55%), Gaps = 4/388 (1%)

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           L  A +VF+     NL+ WN++  G   S  P  A+ L+  M    + P+  T   ++ +
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           CA+ +    G++IH ++ + G  L + +  +L+ MYV+ G+LE A ++FD   ++ VVS 
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 157

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T +I GYA  G+++ A+K+FD++P K VV WNA+I GY +    KEAL LF +M  T ++
Sbjct: 158 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 217

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD  T V  +SAC+Q G+++ G  +H +I+   F  N+ +  AL+D+Y+KCG +  A  +
Sbjct: 218 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGL 277

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  +  ++ +++  +IGG        +A+  F EM+  G  P+++T L IL AC H G +
Sbjct: 278 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 337

Query: 430 DEGRKYFAQMSSIFR-LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           D GR     ++   + ++      + ++D+  + G +E A+Q+  SM +   +  W A+ 
Sbjct: 338 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSWNAMI 396

Query: 489 FACRLHG--NVSIGERAAMKLLELDPQD 514
           F   +HG  N +    + M+   +DP D
Sbjct: 397 FGFAMHGKANAAFDLFSKMRKNGIDPDD 424


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 338/579 (58%), Gaps = 37/579 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL   GF  ++LI   A S   ++ +  ++  ++  P  F WN  IRG+      +
Sbjct: 44  LLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQ 101

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ +Y  M +     PD+FT+P L K C+ L    +G  +   V +LGFD D++V N +
Sbjct: 102 DALLMYSNM-QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGL 160

Query: 121 IHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           I ++  C  LG A  VF+   +  R +VSW ++++ + ++G P EA+ +F  M+   V+P
Sbjct: 161 IALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKP 220

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D V ++ +++A   L+DL  GR IH  + + GL +   L  +L  MY KCG++ +A    
Sbjct: 221 DWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA---- 276

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                                      + +FD +    ++ WNA+I GY +   ++EA+ 
Sbjct: 277 ---------------------------KILFDKMKSPNLILWNAMISGYAKNGYAREAID 309

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           +FHEM    ++PD ++    +SAC+Q+G+L+    ++ ++ + ++  +V + +AL+DM+A
Sbjct: 310 MFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFA 369

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG++  A  VF    +R+ + ++A+I G  LHG+A +AIS +  M   G+ P+++TFLG
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC H G+V EG  +F +M+   +++P+ +HY+C++DLLGR+G L++A ++I+ MP+ 
Sbjct: 430 LLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
             V VWGAL  AC+ H +V +GE AA +L  +DP ++G YV L+N+Y  + +W+   +VR
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
             M+E+G+ K  GCS +EV G L  F V DKSHP  E+I
Sbjct: 549 VRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEI 587



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 215/462 (46%), Gaps = 44/462 (9%)

Query: 59  MREAVDLYKQML-RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
           M EA  L   +L  N G   D+F   L+        L+    +I   +L LG     ++ 
Sbjct: 1   MSEASCLASPLLYTNSGIHSDSFYASLIDSATHKAQLK----QIHARLLVLGLQFSGFLI 56

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
             +IH   S GD+  A  VFD+     +  WN++I G+ R+   ++A+ ++ +MQL RV 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD  T   ++ AC+ L  L +GR +H  +   G    V + N L+ +Y KC +L SA  +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 238 FDS--MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           F+   +  +T+VS T ++  YA+ G                                  E
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNG-------------------------------EPME 205

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL +F +M+   +KPD V  V  L+A + L  L  G  IH  + K    +   L  +L  
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MYAKCG +A A  +F +M   N + + A+I G A +G A +AI  F EMI   + PD I+
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 416 FLGILSACCHGGLVDEGRKYFAQMS-SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
               +SAC   G +++ R  +  +  S +R    +   S ++D+  + G +E A +L+  
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGA-RLVFD 382

Query: 475 MPMAADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQD 514
             +  DVVVW A+     LHG    +I    AM+   + P D
Sbjct: 383 RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPND 424


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 314/546 (57%), Gaps = 31/546 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++ + +Q  +  +W+  I   ++TG   EA+ L+++M +N   +P+  T   +   CA L
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM-QNQKMKPNRVTLMSILPACADL 443

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L  LG  I    +K   D D+    A++ ++  CG    A   F+    R++V+WNSLI
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           NG+ + G P  AI +F  ++L  + PD  TM+G+V ACA L DL+ G  IH  I + G  
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE 563

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               + NAL+DMY KCG L SAE +F    NKT  +                        
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLF----NKTDFT------------------------ 595

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K  V WN II  Y+Q   +KEA++ FH+M+     P++VT V  L A + L A  +G+
Sbjct: 596 --KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             H  I +  F  N ++G +L+DMYAKCG +  + ++F+EM  ++++++ A++ G A+HG
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
               AI+ FS M    +  D ++F+ +LSAC H GLV+EGRK F  MS  + + P L+HY
Sbjct: 714 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHY 773

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR+GL +E    I+ MP+  D  VWGAL  +CR+H NV +GE A   L++L+P
Sbjct: 774 ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           ++   +V+L+++Y  S  W +AGK R  M + G++KTPGCS +E+   ++ F V DKSHP
Sbjct: 834 RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHP 893

Query: 573 ELEQIY 578
           +LE ++
Sbjct: 894 QLESMH 899



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 260/527 (49%), Gaps = 42/527 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  ++D   ++   + + +  SW   + G+   G   E ++L+ +M + G  R +  + 
Sbjct: 274 SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSA 332

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
              F   A       G EI G  L+   D D+ V   ++ ++  CG+   A  +F     
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+LV+W+++I   V++G+P EA+ LF++MQ ++++P+ VT++ ++ ACA L  L LG+ I
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +  ++ +   +    AL+ MY KCG   +A   F+ M ++ +V+  ++I GYA+ G  
Sbjct: 453 HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG-- 510

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                           P+NAI               +F++++ + I PDA T V  + AC
Sbjct: 511 ---------------DPYNAI--------------DMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTY 381
           + L  LD G  IH  I K  F  +  +  AL+DMYAKCG++  A  +F++    ++ +T+
Sbjct: 542 ALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
             II     +G A +AIS F +M      P+ +TF+ +L A  +     EG  + A +  
Sbjct: 602 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           +  LS  L   S ++D+  + G L  +E+L   M    D V W A+     +HG+   G+
Sbjct: 662 MGFLSNTLVGNS-LIDMYAKCGQLXYSEKLFNEMDH-KDTVSWNAMLSGYAVHGH---GD 716

Query: 502 RA-AMKLLELDPQ---DSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           RA A+  L  + Q   DS  +V + +  R   + EE  K+   M ++
Sbjct: 717 RAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDK 763



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 224/474 (47%), Gaps = 43/474 (9%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           D    +  +  NP+   WN  IR +  + +  EA+++Y  M+  G   PD +T+  + K 
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG-LEPDKYTFTFVLKA 138

Query: 89  CA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           C  +L L+  G    G + + G + D+++   ++ ++   GDL  A  VFD+   R++V+
Sbjct: 139 CTGALNLQ-EGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA 197

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I G  +S  P EA+  FR MQL  VEP  V+++ +     +L ++ L R IH Y+ 
Sbjct: 198 WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
               +  V  +N L+D+Y KCG +                               D+AR+
Sbjct: 258 RRDFSSAV--SNGLIDLYSKCGDV-------------------------------DVARR 284

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD + ++  V W  ++ GY       E L LF +M+   ++ + V+ V    A ++   
Sbjct: 285 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETID 344

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  IH    ++  + ++++ T L+ MYAKCG   KA Q+F  +  R+ + ++AII  
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           L   G   +A+S F EM    + P+ +T + IL AC    L+  G+      +    +  
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC-FTVKADMDS 463

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            L   + +V +  + G    A      M  + D+V W +L     ++G   IG+
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSL-----INGYAQIGD 511



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 4/240 (1%)

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T +I  Y+ F   D+AR +FD  P    + WN++I  Y ++K+  EAL +++ M   G
Sbjct: 65  SITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 124

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++PD  T    L AC+    L +G+W H  I++     +V +G  LVDMY+K G++ +A 
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF +MP+R+ + + A+I GL+      +A+ +F  M  VG+ P  ++ L +    C   
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            ++  R        +FR        + ++DL  + G ++ A ++   M +  D V WG +
Sbjct: 245 NIELCRSIHGY---VFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTM 300


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/493 (40%), Positives = 298/493 (60%), Gaps = 10/493 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVF----VSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           ++  H+++ G     YV   +I +     V  G   L   VF +    N   W ++I G+
Sbjct: 60  QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLL--VFGQVNYPNPFLWTAMIRGY 117

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH-WYISESGLTLT 214
              G   E+   +  M+ + V P   T   +  AC    +++LG+++H   I   G    
Sbjct: 118 ALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASD 177

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N+++D+YVKCG L  A ++FD M  + VVS T +IV YAK+G ++ A  +FDDLP 
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPS 237

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +V W A++ GY Q  R KEAL  F +MQ  G++ D VT    +SAC+QLGA+    WI
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297

Query: 335 HRFIEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
               E+  F    NVV+G+AL+DMY+KCG+  +A +VF  M ERN  +Y+++I G A+HG
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +A  A+  F +M+   + P+++TF+GILSAC H GLV++GR+ FA+M   F ++P   HY
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR+G LEEA  L+++MPM  +  VWGAL  ACR+HGN  I + AA +L +L+P
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE-VNGLLYEFIVRDKSH 571
              G Y+LL+N+Y  +  WEE  K+RK++ E+G +K PGCS  E  NG +++F   D +H
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTH 537

Query: 572 PELEQIYDCLVQL 584
           P   +I   L QL
Sbjct: 538 PRSSEIRQALKQL 550



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 198/432 (45%), Gaps = 82/432 (18%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
            GL    +  ++LI      +     Y   +   V  PN F W   IRG+   G + E+ 
Sbjct: 68  NGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSEST 127

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIH 122
           + Y +M R+ G  P +FT+  LFK C +     LG ++    + + GF  D+YV N++I 
Sbjct: 128 NFYTRMRRD-GVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMID 186

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLI------------------------------ 152
           ++V CG LG A  VFDE   R++VSW  LI                              
Sbjct: 187 LYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAM 246

Query: 153 -NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
             G+ ++G P+EA+  F+ MQ   +E DEVT+ G++SACAQL  +     I      SG 
Sbjct: 247 VTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGF 306

Query: 212 --TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +  V + +AL+DMY KCG  + A ++F+ M  + V S ++MI+GYA  G         
Sbjct: 307 GPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG--------- 357

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                 R+  AL LFH+M  T I+P+ VT +  LSACS  G ++
Sbjct: 358 ----------------------RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 330 DGIWIHRFIEKENFNLNVVLGTA--------LVDMYAKCGNIAKALQVFHEMP-ERNSLT 380
            G  +  F + E F      G A        +VD+  + G + +AL +   MP E N   
Sbjct: 396 QGRQL--FAKMEKF-----FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV 448

Query: 381 YTAIIGGLALHG 392
           + A++G   +HG
Sbjct: 449 WGALLGACRIHG 460


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/544 (38%), Positives = 316/544 (58%), Gaps = 37/544 (6%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLRF 96
            Q PNSF  N  +R +   G+  EA+DLY  M R G    +NFTYP + KVCAS LG  F
Sbjct: 92  TQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG-VGVNNFTYPFVLKVCASELGAVF 150

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G  + G V++ GF  D++V  A++ ++  CG++G A  VFD   +R++V W ++I  + 
Sbjct: 151 -GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           ++  P +A+ LFR MQ E    DE+T I + SA  QL D  +   +H Y   +G    V 
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVS 269

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N+++ MY KCG                                ++ AR +FD + E+ 
Sbjct: 270 VGNSIVGMYAKCGN-------------------------------VERARLVFDRMEERN 298

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            + WN+++ GY Q  R  +AL+LF++MQA+   P+ VT +  +SACS LG+   G  +H 
Sbjct: 299 GISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHN 358

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH--EMPERNSLTYTAIIGGLALHGKA 394
           F+     +++  L  A++DMY KCG++  A+++F+  E+ ER+  ++  +I G  +HG  
Sbjct: 359 FVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHG 418

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +A+  FS M   G+ P++ITF  ILSAC H GL+DEGRK FA M+ +  + P++KHY+C
Sbjct: 419 KEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYAC 477

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVD+LGR+G L EA +LI+ +P      VWGAL  ACR+HGN  +GE AA  L +L+P+ 
Sbjct: 478 MVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEH 537

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
           +G YVL++N+Y  SN W+E   VR+ M+ RG++K    S IE    ++ F   D+S P  
Sbjct: 538 TGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYY 597

Query: 575 EQIY 578
            ++Y
Sbjct: 598 REVY 601



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKC-GKLESAEEIFDSMVNKTVVSCTT-----MI 253
           R +H ++S +   L +P  +   D  ++C   L + + I  S+  +  +  T      +I
Sbjct: 7   RALH-HLSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLI 65

Query: 254 VGYAKFGFLDIARKIFD----------DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + Y+K G L  AR +FD            P  ++   N ++  Y  A RS EA+ L+  M
Sbjct: 66  ILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLC--NTMLRAYANAGRSYEAIDLYIYM 123

Query: 304 QATGIKPDAVTTVHCLSAC-SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           Q  G+  +  T    L  C S+LGA+  G  +H  + +  F  ++ +  ALVDMYAKCG 
Sbjct: 124 QRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGE 182

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I  A +VF  M  R+ + +TA+I       + L A+  F +M   G + DEIT + + SA
Sbjct: 183 IGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA 242

Query: 423 CCHGGLVDEGR 433
               G + +GR
Sbjct: 243 V---GQLGDGR 250


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 322/549 (58%), Gaps = 54/549 (9%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           R A++ Y  M R      D+F  P + K C+ + +  +G EI G  +K G   D++V NA
Sbjct: 91  RYALNTYTYM-RKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN----------------------GFVR 157
           ++ ++  CG L  A  +FD+   R++VSW+++I                       G++R
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
                E  RLF  M  E V P+++TM+ ++ +C  +  + LG+ +H YI  +G  +++ L
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLAL 269

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           A AL+DMY KCG++ SA                               R IFD +  K V
Sbjct: 270 ATALVDMYGKCGEIRSA-------------------------------RAIFDSMKNKDV 298

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W A+I  Y QA     A  LF +M+  G++P+ +T V  LS C+  GALD G W H +
Sbjct: 299 MTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAY 358

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+K+   ++V+L TAL+DMYAKCG+I+ A ++F E  +R+  T+  ++ G  +HG    A
Sbjct: 359 IDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKA 418

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F+EM  +G+ P++ITF+G L AC H GLV EG+  F +M   F L PK++HY CMVD
Sbjct: 419 LKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVD 478

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+GLL+EA ++I SMP+  ++ +WGA+  AC++H N ++GE AA +LL L+PQ+ G 
Sbjct: 479 LLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGY 538

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
            VL++N+Y  +N W +   +RK +++ G++K PG SSIEVNGL+++F + D +HP +E+I
Sbjct: 539 KVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKI 598

Query: 578 YDCLVQLTR 586
            + L ++++
Sbjct: 599 SEMLAEMSK 607



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 182/360 (50%), Gaps = 21/360 (5%)

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           PR A+  +  M+   +E D   +  ++ AC+Q+    +G+EIH +  ++GL   V + NA
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           LM MY +CG L SA  +FD M  + VVS +TMI  Y           +F    ++ +V W
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYGFSQRSIVSW 200

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I GY++    +E   LF  M    + P+ +T +  + +C  +GA+  G  +H +I +
Sbjct: 201 TAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILR 260

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F +++ L TALVDMY KCG I  A  +F  M  ++ +T+TA+I   A       A   
Sbjct: 261 NGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQL 320

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLL 459
           F +M   G+ P+E+T + +LS C   G +D G+ + A +      +   LK  + ++D+ 
Sbjct: 321 FVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILK--TALIDMY 378

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLLELDPQD 514
            + G +  A++L  S  +  D+  W  +     +HG    GE+A      M+ L + P D
Sbjct: 379 AKCGDISGAQRLF-SEAIDRDICTWNVMMAGYGMHG---YGEKALKLFTEMETLGVKPND 434



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 166/349 (47%), Gaps = 34/349 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   I G++    + E   L+ +M+      P++ T   L   C  +G   LG  +  +
Sbjct: 199 SWTAMIAGYIRCNDLEEGERLFVRMIEE-NVFPNDITMLSLIISCGFVGAVQLGKRLHAY 257

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +L+ GF + + +  A++ ++  CG++  A  +FD    +++++W ++I+ + ++     A
Sbjct: 258 ILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYA 317

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
            +LF  M+   V P+E+TM+ ++S CA    L++G+  H YI + G+ + V L  AL+DM
Sbjct: 318 FQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDM 377

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG +  A+ +F   +++ + +   M+ GY   G+                       
Sbjct: 378 YAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGY----------------------- 414

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENF 343
                    ++AL LF EM+  G+KP+ +T +  L ACS  G + +G  +  + I     
Sbjct: 415 --------GEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGL 466

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
              V     +VD+  + G + +A ++   MP   N   + A++    +H
Sbjct: 467 VPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 321/583 (55%), Gaps = 37/583 (6%)

Query: 6   LISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +I++GF  S L A  A+    ++ + ++   K+   +   +  SWN  + G+ + G  R 
Sbjct: 168 VITNGFQ-SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARR 226

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           AV +  QM +  G +PD+ T   +    A L    +G  I G+  + GF+  + V  A++
Sbjct: 227 AVQVVLQM-QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
             +  CG +  A  VF     RN+VSWN++I+G+ ++G   EA   F  M  E VEP  V
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +M+G + ACA L DL  GR +H  + E  +   V + N+L+ MY KC ++          
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRV---------- 395

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                DIA  +F +L  K VV WNA+I GY Q     EAL LF 
Sbjct: 396 ---------------------DIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFC 434

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EMQ+  IKPD+ T V  ++A + L       WIH    +   + NV + TAL+D +AKCG
Sbjct: 435 EMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCG 494

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            I  A ++F  M ER+ +T+ A+I G   +G   +A+  F+EM    + P+EITFL +++
Sbjct: 495 AIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIA 554

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLV+EG  YF  M   + L P + HY  MVDLLGR+G L++A + I+ MP+   +
Sbjct: 555 ACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGI 614

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            V GA+  ACR+H NV +GE+ A +L +LDP D G +VLLANMY  ++MW++  +VR  M
Sbjct: 615 TVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAM 674

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E++G++KTPGCS +E+   ++ F     +HP+ ++IY  L  L
Sbjct: 675 EKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETL 717



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/544 (25%), Positives = 259/544 (47%), Gaps = 41/544 (7%)

Query: 9   HGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQ 68
           H F    +  FC  +   ++    ++   V++     ++  ++G+ +   +R+AV  Y++
Sbjct: 76  HLFQTKLISLFCKFN---SITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYER 132

Query: 69  MLRNGGTRPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           M R     P  + +  L ++   +L LR  G EI G V+  GF  +++   AV++++  C
Sbjct: 133 M-RCDEVMPVVYDFTYLLQLSGENLDLR-RGREIHGMVITNGFQSNLFAMTAVVNLYAKC 190

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
             +  A  +F+    R+LVSWN+++ G+ ++GF R A+++   MQ    +PD +T++ ++
Sbjct: 191 RQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVL 250

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            A A L+ L +GR IH Y   +G    V +A A++D Y KCG + SA  +F  M ++ VV
Sbjct: 251 PAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVV 310

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S  TMI GYA+ G                                S+EA A F +M   G
Sbjct: 311 SWNTMIDGYAQNG-------------------------------ESEEAFATFLKMLDEG 339

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++P  V+ +  L AC+ LG L+ G ++HR ++++    +V +  +L+ MY+KC  +  A 
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAA 399

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VF  +  +  +T+ A+I G A +G   +A++ F EM    + PD  T + +++A     
Sbjct: 400 SVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLS 459

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +  +  K+   ++    +   +   + ++D   + G ++ A +L   M     V+ W A+
Sbjct: 460 VTRQA-KWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLM-QERHVITWNAM 517

Query: 488 F--FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
              +    HG  ++     M+   + P +     ++A       + E       M E  G
Sbjct: 518 IDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYG 577

Query: 546 VEKT 549
           +E T
Sbjct: 578 LEPT 581



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 10/198 (5%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  C+ L  L     I   I K  F    +  T L+ ++ K  +I +A +VF  +  +  
Sbjct: 51  LELCTSLKELHQ---ILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLD 107

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + Y  ++ G A +    DA+ ++  M    +MP    F  +L        +  GR+    
Sbjct: 108 VLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHG- 166

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M         L   + +V+L  +   +E+A ++   MP   D+V W  +      +G   
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQ-RDLVSWNTVVAGYAQNG--- 222

Query: 499 IGERAAMKLLELDPQDSG 516
              RA   +L++  Q++G
Sbjct: 223 FARRAVQVVLQM--QEAG 238


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/521 (39%), Positives = 313/521 (60%), Gaps = 35/521 (6%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDESCVRNLVSWNSLINGFV 156
           +I   ++K   D + +V   ++    +C    DL  A +VFDE    +   WN++I  ++
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 157 RSGFPREAIRLFRDMQLERVEP-DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
            S  P+E++ LF  M+ +   P D  ++  ++ AC +L+D   G+++H  + + GL   +
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 216 PLANALMDMYVKCGKLESAEEI-------------------------------FDSMVNK 244
            +  AL++MY K G +E A  I                               FD M  +
Sbjct: 141 FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPER 200

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            +VS  TMI G+A  G +  A+K+FD   E+ ++ W+++I  Y +A++S EAL LFHEMQ
Sbjct: 201 DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQ 260

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
              + PD VT V  LSAC  +GAL  G  IH  IE+    +++ LGT+LVDMYAKCG+I 
Sbjct: 261 LANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDID 320

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            +L+VF+ M  R+   ++A+I GLA HG    A+ +FS+MI   + P+++TF+G+LSAC 
Sbjct: 321 NSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACS 380

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLVDEG  YF  MS ++ +SPK++HY C+VD+LGR+G L+EA +LI+SMP A D +VW
Sbjct: 381 HIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVW 440

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL  ACR++ NV I E A + LLEL+P   G YVLL+N+Y  +  W++   VR+MM+  
Sbjct: 441 RALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNI 500

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            ++K PG SSIEV+  ++EF+  D+SHPE ++I   L ++T
Sbjct: 501 NIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEIT 541



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 207/450 (46%), Gaps = 98/450 (21%)

Query: 4   TGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           T L  + F  ++L+    A S + +L Y   +   + +P++F WN  IR +L +   +E+
Sbjct: 29  TSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQES 88

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + L+ QM        D+++  L+ + C  L     G ++   VLK+G   D++V  A+I 
Sbjct: 89  MSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIE 148

Query: 123 VFVSCGDLGLACNVFDESC-------------------------------VRNLVSWNSL 151
           ++   GD+ +A N+ DE                                  R+LVSWN++
Sbjct: 149 MYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTM 208

Query: 152 INGFVRSG--------FPR-----------------------EAIRLFRDMQLERVEPDE 180
           I+G    G        F R                       EA+RLF +MQL  V PD+
Sbjct: 209 IHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDK 268

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTM+ ++SAC  +  L +G+ IH  I  + + + + L  +L+DMY KCG ++++  +F+ 
Sbjct: 269 VTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNG 328

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M N+ V + + MI+G A  GF ++                               AL  F
Sbjct: 329 MNNRDVFAWSAMIMGLANHGFGEL-------------------------------ALDHF 357

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYA 358
            +M +  IKP+ VT +  LSACS +G +D+G W +     + ++++  +     +VD+  
Sbjct: 358 SKMISEDIKPNDVTFIGVLSACSHIGLVDEG-WTYFTSMSKVYDVSPKIEHYGCVVDILG 416

Query: 359 KCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
           + G + +A+++   MP   +++ + A++G 
Sbjct: 417 RAGRLQEAMELIKSMPFAPDAIVWRALLGA 446


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/493 (40%), Positives = 298/493 (60%), Gaps = 10/493 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVF----VSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           ++  H+++ G     YV   +I +     V  G   L   VF +    N   W ++I G+
Sbjct: 60  QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLL--VFGQVNYPNPFLWTAMIRGY 117

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH-WYISESGLTLT 214
              G   E+   +  M+ + V P   T   +  AC    +++LG+++H   I   G    
Sbjct: 118 ALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASD 177

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N+++D+YVKCG L  A ++FD M  + VVS T +IV YAK+G ++ A  +FDDLP 
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPL 237

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +V W A++ GY Q  R KEAL  F +MQ  G++ D VT    +SAC+QLGA+    WI
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297

Query: 335 HRFIEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
               E+  F    NVV+G+AL+DMY+KCG+  +A +VF  M ERN  +Y+++I G A+HG
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +A  A+  F +M+   + P+++TF+GILSAC H GLV++GR+ FA+M   F ++P   HY
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR+G LEEA  L+++MPM  +  VWGAL  ACR+HGN  I + AA +L +L+P
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE-VNGLLYEFIVRDKSH 571
              G Y+LL+N+Y  +  WEE  K+RK++ E+G +K PGCS  E  NG +++F   D +H
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTH 537

Query: 572 PELEQIYDCLVQL 584
           P   +I   L QL
Sbjct: 538 PRSSEIRQALKQL 550



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 198/432 (45%), Gaps = 82/432 (18%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
            GL    +  ++LI      +     Y   +   V  PN F W   IRG+   G + E+ 
Sbjct: 68  NGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSEST 127

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIH 122
           + Y +M R+ G  P +FT+  LFK C +     LG ++    + + GF  D+YV N++I 
Sbjct: 128 NFYTRMRRD-GVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMID 186

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLI------------------------------ 152
           ++V CG LG A  VFDE   R++VSW  LI                              
Sbjct: 187 LYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAM 246

Query: 153 -NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
             G+ ++G P+EA+  F+ MQ   +E DEVT+ G++SACAQL  +     I      SG 
Sbjct: 247 VTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGF 306

Query: 212 --TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +  V + +AL+DMY KCG  + A ++F+ M  + V S ++MI+GYA  G         
Sbjct: 307 GPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG--------- 357

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                 R+  AL LFH+M  T I+P+ VT +  LSACS  G ++
Sbjct: 358 ----------------------RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 330 DGIWIHRFIEKENFNLNVVLGTA--------LVDMYAKCGNIAKALQVFHEMP-ERNSLT 380
            G  +  F + E F      G A        +VD+  + G + +AL +   MP E N   
Sbjct: 396 QGRQL--FAKMEKF-----FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV 448

Query: 381 YTAIIGGLALHG 392
           + A++G   +HG
Sbjct: 449 WGALLGACRIHG 460


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/505 (39%), Positives = 308/505 (60%), Gaps = 11/505 (2%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV-SCGDLGLAC---NVFDES 140
           L K C++L  + L ++    +L  G D D    N ++  F+ +C  LG +    ++F   
Sbjct: 47  LLKQCSNL--KHL-HQTHCFMLSRGLDQD----NILLSRFIEACSSLGFSHYSHSIFTHK 99

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
              ++  +N++I          EAI L+  +    +  D  ++  ++ A  +L  +++GR
Sbjct: 100 TRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGR 159

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           +IH     +GL   + +  AL+ MY  CG +  A ++FD +  + V     M+ GYAK G
Sbjct: 160 QIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +D AR +F+ +PE+ V+ W A+I GY Q  R  EA+ +F  MQ   ++PD +  +  LS
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ LGAL+ G WIH +I+K   +  V L  AL+DMYAKCG I KAL+VF  M  ++ +T
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +T++I GLALHG   +A+  FS M    + P+EITF+ ILSACCH GLV+ GR YF  M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           + + + PK++HY CM+DLLGR+G L+EA++L+R MP  A+  +WG+L  A R+HG+  +G
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ++A   L++++P +SG Y LL+N+Y   + W EAG VRK+M + GV+K PG S IEVN  
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNR 519

Query: 561 LYEFIVRDKSHPELEQIYDCLVQLT 585
           ++EF+  DK HP+ E+I++ L +J 
Sbjct: 520 VHEFVAGDKLHPQSERIFEVLCKJN 544



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 195/427 (45%), Gaps = 67/427 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M   GL       SR I  C  S      Y   I  +   P+ + +N  I+         
Sbjct: 64  MLSRGLDQDNILLSRFIEAC--SSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELAT 121

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ LY ++L +   R D ++ P + K    L    +G +I    +  G   D++V  A+
Sbjct: 122 EAILLYNRILASD-LRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTAL 180

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--------------------- 159
           I ++ SCG +  A  +FD  C R++  WN+++ G+ + G                     
Sbjct: 181 IQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWT 240

Query: 160 ----------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                      P EAI +FR MQLE VEPDE+ M+  +SACA L  L LG  IH YI + 
Sbjct: 241 AVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKH 300

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL+  VPL NAL+DMY KCGK+E A E+F +M +K+V++ T+MI G A  G         
Sbjct: 301 GLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGL-------- 352

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                   +EAL +F  M+   IKP+ +T V  LSAC  +G ++
Sbjct: 353 -----------------------GREALEMFSCMERNRIKPNEITFVAILSACCHVGLVE 389

Query: 330 DGIWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
            G W  + +  K      +     ++D+  + G + +A ++   MP E N+  + +++  
Sbjct: 390 MGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAA 449

Query: 388 LALHGKA 394
             +HG A
Sbjct: 450 ARIHGDA 456


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 337/579 (58%), Gaps = 37/579 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL   GF  ++LI   A S   ++ +  ++  ++  P  F WN  IRG+      +
Sbjct: 44  LLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQ 101

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ +Y  M +     PD+FT+P L K C+ L    +G  +   V +LGFD D++V N +
Sbjct: 102 DALLMYSNM-QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGL 160

Query: 121 IHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           I ++  C  LG A  VF+   +  R +VSW ++++ + ++G P EA+ +F  M+   V+P
Sbjct: 161 IALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKP 220

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D V ++ +++A   L+DL  GR IH  + + GL +   L  +L  MY KCG++ +A    
Sbjct: 221 DWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA---- 276

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                                      + +FD +    ++ WNA+I GY +   ++EA+ 
Sbjct: 277 ---------------------------KILFDKMKSPNLILWNAMISGYAKNGYAREAID 309

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           +FHEM    ++PD ++    +SAC+Q+G+L+    ++ ++ + ++  +V + +AL+DM+A
Sbjct: 310 MFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFA 369

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG++  A  VF    +R+ + ++A+I G  LHG+A +AIS +  M   G+ P+++TFLG
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC H G+V EG  +F  M+   +++P+ +HY+C++DLLGR+G L++A ++I+ MP+ 
Sbjct: 430 LLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
             V VWGAL  AC+ H +V +GE AA +L  +DP ++G YV L+N+Y  + +W+   +VR
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
             M+E+G+ K  GCS +EV G L  F V DKSHP  E+I
Sbjct: 549 VRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEI 587



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 214/462 (46%), Gaps = 44/462 (9%)

Query: 59  MREAVDLYKQML-RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
           M EA  L   +L  N G   D+F   L+        L+    +I   +L LG     ++ 
Sbjct: 1   MSEASCLASPLLYTNSGIHSDSFYASLIDSATHKAQLK----QIHARLLVLGLQFSGFLI 56

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
             +IH   S GD+  A  VFD+     +  WN++I G+ R+   ++A+ ++ +MQL RV 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD  T   ++ AC+ L  L +GR +H  +   G    V + N L+ +Y KC +L SA  +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 238 FDS--MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           F+   +  +T+VS T ++  YA+ G                                  E
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNG-------------------------------EPME 205

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL +F  M+   +KPD V  V  L+A + L  L  G  IH  + K    +   L  +L  
Sbjct: 206 ALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MYAKCG +A A  +F +M   N + + A+I G A +G A +AI  F EMI   + PD I+
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 416 FLGILSACCHGGLVDEGRKYFAQMS-SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
               +SAC   G +++ R  +  +  S +R    +   S ++D+  + G +E A +L+  
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGA-RLVFD 382

Query: 475 MPMAADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQD 514
             +  DVVVW A+     LHG    +I    AM+   + P D
Sbjct: 383 RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPND 424


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/550 (38%), Positives = 312/550 (56%), Gaps = 41/550 (7%)

Query: 39  QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
           Q  +SF  N  I+ +LET +  ++  LY+ + +     PDNFT+  L K C+     + G
Sbjct: 38  QRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQG 97

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
            ++   + + GF  DMYV   V+ ++   G +G A N FDE   R+ VSW +LI+G++R 
Sbjct: 98  LQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRC 157

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G    A +LF  M                     ++D                   V + 
Sbjct: 158 GELDLASKLFDQM-------------------PHVKD-------------------VVIY 179

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NA+MD +VK G + SA  +FD M +KTV++ TTMI GY     +D ARK+FD +PE+ +V
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
            WN +IGGY Q K+ +E + LF EMQAT  + PD VT +  L A S  GAL  G W H F
Sbjct: 240 SWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           ++++  +  V + TA++DMY+KCG I KA ++F EMPE+   ++ A+I G AL+G A  A
Sbjct: 300 VQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAA 359

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F  M+ +   PDEIT L +++AC HGGLV+EGRK+F  M  +  L+ K++HY CMVD
Sbjct: 360 LDLFVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVD 417

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L+EAE LI +MP   + ++  +   AC  + ++   ER   K +EL+PQ+ G 
Sbjct: 418 LLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGN 477

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLL N+Y     W++ G V+ +M +   +K  GCS IE+N ++ EFI  D +HP    I
Sbjct: 478 YVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSI 537

Query: 578 YDCLVQLTRH 587
           +  L  L  H
Sbjct: 538 HLVLGDLLMH 547



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 18  AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP 77
            +C I   K++D   K+   +   N  SWN  I G+ +  + +E + L+++M       P
Sbjct: 216 GYCNI---KDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDP 272

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D+ T   +    +  G   LG      V +   D  + V  A++ ++  CG++  A  +F
Sbjct: 273 DDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIF 332

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           DE   + + SWN++I+G+  +G  R A+ LF  M +E  +PDE+TM+ +++AC     + 
Sbjct: 333 DEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLVE 391

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            GR+    + E GL   +     ++D+  + G L+ AE++  +M
Sbjct: 392 EGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM 435



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 36/180 (20%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+   ++   +I   +      SWN  I G+   G  R A+DL+  M+     +PD  T 
Sbjct: 320 SKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIE--EKPDEITM 377

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C   GL   G + F HV++                     ++GL   +    C+
Sbjct: 378 LAVITACNHGGLVEEGRKWF-HVMR---------------------EMGLNAKIEHYGCM 415

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +L+          R+G  +EA  L  +M     EP+ + +   +SAC Q +D+     I
Sbjct: 416 VDLLG---------RAGSLKEAEDLITNMPF---EPNGIILSSFLSACGQYKDIERAERI 463


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/505 (39%), Positives = 308/505 (60%), Gaps = 11/505 (2%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV-SCGDLGLAC---NVFDES 140
           L K C++L  + L ++    +L  G D D    N ++  F+ +C  LG +    ++F   
Sbjct: 47  LLKQCSNL--KHL-HQTHCFMLSRGLDQD----NILLSRFIEACSSLGFSHYSHSIFTHK 99

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
              ++  +N++I          EAI L+  +    +  D  ++  ++ A  +L  +++GR
Sbjct: 100 TRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGR 159

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           +IH     +GL   + +  AL+ MY  CG +  A ++FD +  + V     M+ GYAK G
Sbjct: 160 QIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +D AR +F+ +PE+ V+ W A+I GY Q  R  EA+ +F  MQ   ++PD +  +  LS
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ LGAL+ G WIH +I+K   +  V L  AL+DMYAKCG I KAL+VF  M  ++ +T
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +T++I GLALHG   +A+  FS M    + P+EITF+ ILSACCH GLV+ GR YF  M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           + + + PK++HY CM+DLLGR+G L+EA++L+R MP  A+  +WG+L  A R+HG+  +G
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ++A   L++++P +SG Y LL+N+Y   + W EAG VRK+M + GV+K PG S IEVN  
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNR 519

Query: 561 LYEFIVRDKSHPELEQIYDCLVQLT 585
           ++EF+  DK HP+ E+I++ L ++ 
Sbjct: 520 VHEFVAGDKLHPQSERIFEVLCKIN 544



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 195/427 (45%), Gaps = 67/427 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M   GL       SR I  C  S      Y   I  +   P+ + +N  I+         
Sbjct: 64  MLSRGLDQDNILLSRFIEAC--SSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELAT 121

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ LY ++L +   R D ++ P + K    L    +G +I    +  G   D++V  A+
Sbjct: 122 EAILLYNRILASD-LRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTAL 180

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--------------------- 159
           I ++ SCG +  A  +FD  C R++  WN+++ G+ + G                     
Sbjct: 181 IQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWT 240

Query: 160 ----------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                      P EAI +FR MQLE VEPDE+ M+  +SACA L  L LG  IH YI + 
Sbjct: 241 AVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKH 300

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL+  VPL NAL+DMY KCGK+E A E+F +M +K+V++ T+MI G A  G         
Sbjct: 301 GLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGL-------- 352

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                   +EAL +F  M+   IKP+ +T V  LSAC  +G ++
Sbjct: 353 -----------------------GREALEMFSCMERNRIKPNEITFVAILSACCHVGLVE 389

Query: 330 DGIWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
            G W  + +  K      +     ++D+  + G + +A ++   MP E N+  + +++  
Sbjct: 390 MGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAA 449

Query: 388 LALHGKA 394
             +HG A
Sbjct: 450 ARIHGDA 456


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 316/552 (57%), Gaps = 43/552 (7%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  S+ +  C  +   N  Y T +   V +P++  WN  I+G+ E   +   V 
Sbjct: 52  GLHQDHFIISQFLTLC--NSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVS 109

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M R+    PD FTYP L K C+ +     G    G  ++ G   D++V  ++I ++
Sbjct: 110 LFIRMKRSDAV-PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLY 168

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             CG++  A  VFDE   RN+VSW ++I G+       EA +LF +M      P++    
Sbjct: 169 GKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM------PEK---- 218

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
                            + W              NA++  YVKCG L SA ++FD M ++
Sbjct: 219 ---------------NAVSW--------------NAIISGYVKCGDLRSARKMFDEMPHR 249

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VVS TTMI GYAK G +  AR +F++ PE+ VV W+A+I GYVQ  +  EA+ +F EM 
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMC 309

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAKCGNI 363
           +  +KPD    V  +SACSQ+G+L+   W+  ++ K + +++   +  AL+DM AKCG++
Sbjct: 310 SRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSM 369

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A ++F EMP+R+ ++Y +++ GL++HG    A+S FS M+  GL PD++ F  IL+AC
Sbjct: 370 DRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTAC 429

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
              GLVDEG  YF  M + + + P   HY+CMVDLLGR+G L+EA +L++SMP+      
Sbjct: 430 SRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGA 489

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL  AC+LH ++ +GE  A +L EL+PQ++G YVLL+N+Y  +  W +   +R  M E
Sbjct: 490 WGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRE 549

Query: 544 RGVEKTPGCSSI 555
           RG+ K PGCS I
Sbjct: 550 RGIRKIPGCSWI 561



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 199/431 (46%), Gaps = 46/431 (10%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           ++   +++ G   D ++ +  + +  S  +     +VF+     + V WN+ I G+  + 
Sbjct: 43  QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENY 102

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
                + LF  M+     PD+ T   ++ AC+++  +  G   H      G+   V +  
Sbjct: 103 SVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMT 162

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+D+Y KCG++  A ++FD M  + VVS T MI GYA F  L  ARK+FD++PEK  V 
Sbjct: 163 SLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVS 222

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNAII GYV+    + A  +F EM                               HR   
Sbjct: 223 WNAIISGYVKCGDLRSARKMFDEMP------------------------------HR--- 249

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
                 NVV  T ++D YAK G++A A  VF E PER+ + ++A+I G   +G+  +A+ 
Sbjct: 250 ------NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVK 303

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIFRLSPKLKHYSCMVD 457
            F EM    + PDE   + ++SAC   G ++  +    + + SSI      +   + ++D
Sbjct: 304 IFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHV--IAALID 361

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE--LDPQDS 515
           +  + G ++ A +L   MP   D++ + ++     +HG          ++L   L P D 
Sbjct: 362 MNAKCGSMDRATKLFEEMP-KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDV 420

Query: 516 GIYVLLANMYR 526
              V+L    R
Sbjct: 421 AFTVILTACSR 431


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/550 (38%), Positives = 312/550 (56%), Gaps = 41/550 (7%)

Query: 39  QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
           Q  +SF  N  I+ +LET +  ++  LY+ + +     PDNFT+  L K C+     + G
Sbjct: 38  QRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQG 97

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
            ++   + + GF  DMYV   V+ ++   G +G A N FDE   R+ VSW +LI+G++R 
Sbjct: 98  LQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRC 157

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G    A +LF  M                     ++D                   V + 
Sbjct: 158 GELDLASKLFDQM-------------------PHVKD-------------------VVIY 179

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NA+MD +VK G + SA  +FD M +KTV++ TTMI GY     +D ARK+FD +PE+ +V
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
            WN +IGGY Q K+ +E + LF EMQAT  + PD VT +  L A S  GAL  G W H F
Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           ++++  +  V + TA++DMY+KCG I KA ++F EMPE+   ++ A+I G AL+G A  A
Sbjct: 300 VQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAA 359

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F  M+ +   PDEIT L +++AC HGGLV+EGRK+F  M  +  L+ K++HY CMVD
Sbjct: 360 LDLFVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVD 417

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L+EAE LI +MP   + ++  +   AC  + ++   ER   K +EL+PQ+ G 
Sbjct: 418 LLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGN 477

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLL N+Y     W++ G V+ +M +   +K  GCS IE+N ++ EFI  D +HP    I
Sbjct: 478 YVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSI 537

Query: 578 YDCLVQLTRH 587
           +  L  L  H
Sbjct: 538 HLVLGDLLMH 547



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 18  AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP 77
            +C I   K++D   K+   +   N  SWN  I G+ +  + +E + L+++M       P
Sbjct: 216 GYCNI---KDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDP 272

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D+ T   +    +  G   LG      V +   D  + V  A++ ++  CG++  A  +F
Sbjct: 273 DDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIF 332

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           DE   + + SWN++I+G+  +G  R A+ LF  M +E  +PDE+TM+ +++AC     + 
Sbjct: 333 DEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLVE 391

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            GR+    + E GL   +     ++D+  + G L+ AE++  +M
Sbjct: 392 EGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM 435



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 36/180 (20%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+   ++   +I   +      SWN  I G+   G  R A+DL+  M+     +PD  T 
Sbjct: 320 SKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIE--EKPDEITM 377

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C   GL   G + F HV++                     ++GL   +    C+
Sbjct: 378 LAVITACNHGGLVEEGRKWF-HVMR---------------------EMGLNAKIEHYGCM 415

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +L+          R+G  +EA  L  +M     EP+ + +   +SAC Q +D+     I
Sbjct: 416 VDLLG---------RAGSLKEAEDLITNMPF---EPNGIILSSFLSACGQYKDIERAERI 463


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 325/570 (57%), Gaps = 36/570 (6%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  S LI F   SE+  +     +   + + +   WNV + G+++ G    A  ++ +M 
Sbjct: 183 FVGSSLIKF--YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMR 240

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN--AVIHVFVSCG 128
           R   T P++ T+  +  VCAS  +   G ++ G V+  G ++D  V N  A+I ++  C 
Sbjct: 241 RTE-TNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCR 299

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           D+ +A  +FD+    ++V   ++I+G+V +G    A+ +FR +  ER+  + VT+  ++ 
Sbjct: 300 DVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLP 359

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           ACA L  L LG+E+H +I ++G   +  + +A+MDMY KCG+L                 
Sbjct: 360 ACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRL----------------- 402

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
                         D+A + F  + +K  V WN++I    Q  + +EA+ LF +M   G 
Sbjct: 403 --------------DLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT 448

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           K D V+    LSAC+ L AL  G  IH F+ +  F  ++   +AL+DMY+KCGN+  A +
Sbjct: 449 KYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACR 508

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF  M E+N +++ +II     HG+  D+++ F  M+G G+ PD +TFL I+SAC H G 
Sbjct: 509 VFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQ 568

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           VDEG  YF  M+    +  +++HY+CMVDL GR+G L EA  +I SMP + D  VWG L 
Sbjct: 569 VDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLL 628

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
            ACRLHGNV + E A+  L +LDPQ+SG YVLL+N++ ++  WE   K+R +M+ERGV+K
Sbjct: 629 GACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQK 688

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            PGCS I+VN   + F+  D+SHP+  QIY
Sbjct: 689 VPGCSWIDVNNTTHMFVAADRSHPQSSQIY 718



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 143/344 (41%), Gaps = 35/344 (10%)

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVT--MIGMVSACAQLEDLNLGREIHWYISESGLT 212
           F    F   ++ + + +Q      D +   ++ ++  C     L+ GR+ H  +  +G+ 
Sbjct: 19  FKLKSFHTNSVNIGKPLQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIG 78

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               L   L+ MYV CG                               FLD A+ IF  L
Sbjct: 79  YNGILGTKLLGMYVLCG------------------------------AFLD-AKNIFYQL 107

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                 PWN +I G+    +   AL  + +M   G  PD  T  + + AC  L ++  G 
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H  I+   F L+V +G++L+  Y++ G I  A  +F  MP ++ + +  ++ G   +G
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKH 451
              +A   F EM      P+ +TF  +LS C    +++ G +     +SS   +   + +
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              ++D+  +   +E A + I       D+VV  A+     L+G
Sbjct: 288 TFALIDIYFKCRDVEMARK-IFDQRTPVDIVVCTAMISGYVLNG 330



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 23/198 (11%)

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           A   V  L  C+    L  G   H  +       N +LGT L+ MY  CG    A  +F+
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFY 105

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL--- 428
           ++    S  +  +I G  + G+   A+ ++ +M+G G +PD+ TF  ++ AC  GGL   
Sbjct: 106 QLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC--GGLNSV 163

Query: 429 -----VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
                V +  ++      +F  S  +K YS        +G + +A  L   MP + D V+
Sbjct: 164 ALGRVVHDKIQFMGFELDVFVGSSLIKFYS-------ENGCIHDARYLFDRMP-SKDGVL 215

Query: 484 WGALFFACRLHGNVSIGE 501
           W  +     L+G V  G+
Sbjct: 216 WNVM-----LNGYVKNGD 228


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/555 (37%), Positives = 310/555 (55%), Gaps = 41/555 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +  PN+  WN   RG+ +    ++ + L++QM +     P+ FT+P++ K C  +
Sbjct: 6   KVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQM-KGLDVMPNCFTFPVILKSCVKI 64

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G E+   V+K GF  + +V   +I ++ S G +  A  VF E   RN+++W ++I
Sbjct: 65  NALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMI 124

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           NG++       A RLF D+  ER                                     
Sbjct: 125 NGYITCCDLVTARRLF-DLAPER------------------------------------- 146

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L N ++  Y++   +  A E+FD M NK V+S  T++ GYA  G +    ++F+++
Sbjct: 147 -DIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEM 205

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDG 331
           PE+ V  WNA+IGGY +     E L+ F  M   G + P+  T V+ LSAC++LGALD G
Sbjct: 206 PERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLG 265

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            W+H + E   +  NV +  AL+DMYAKCG +  AL VF  M  ++ +++  IIGGLA+H
Sbjct: 266 KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVH 325

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G   DA++ FS M   G  PD ITF+GIL AC H GLV++G  YF  M+  + + P+++H
Sbjct: 326 GHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEH 385

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y C+VDLLGR+GLL  A   IR MP+ AD V+W AL  ACR++ NV + E A  KL+E +
Sbjct: 386 YGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFE 445

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P++   YV+L+N+Y D   W++  +++  M + G +K PGCS IEVN  L EF   D+ H
Sbjct: 446 PKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERH 505

Query: 572 PELEQIYDCLVQLTR 586
           PE EQIY  L  LT+
Sbjct: 506 PEKEQIYGTLRTLTK 520



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 174/365 (47%), Gaps = 42/365 (11%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD+    N   WN++  G+ ++   ++ I LFR M+   V P+  T   ++ +C +
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           +  L  G E+H ++ +SG      +A  L+DMY   G + +A  +F  M+ + V++ T M
Sbjct: 64  INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I GY     L  AR++FD  PE+ +V WN +I GY++AK    A  LF +M         
Sbjct: 124 INGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMP-------- 175

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
                                          N +V+    +++ YA  G++    ++F E
Sbjct: 176 -------------------------------NKDVMSWNTVLNGYASNGDVMACERLFEE 204

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDE 431
           MPERN  ++ A+IGG   +G   + +S F  M+  G ++P++ T + +LSAC   G +D 
Sbjct: 205 MPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDL 264

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G K+    +        +   + ++D+  + G++E A  + +SM    D++ W  +    
Sbjct: 265 G-KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMD-NKDLISWNTIIGGL 322

Query: 492 RLHGN 496
            +HG+
Sbjct: 323 AVHGH 327



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           ++ A K+FD +PE     WNA+  GY Q +  K+ + LF +M+   + P+  T    L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C ++ AL +G  +H F+ K  F  N  + T L+DMYA  G I  A +VF EM ERN + +
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMP--DEITFLGILSACCHGGLVDEGRKYFAQM 439
           TA+I G       + A   F       L P  D + +  ++S       V   R+ F +M
Sbjct: 121 TAMINGYITCCDLVTARRLFD------LAPERDIVLWNTMISGYIEAKDVIRARELFDKM 174

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +   +S     ++ +++    +G +   E+L   MP   +V  W AL
Sbjct: 175 PNKDVMS-----WNTVLNGYASNGDVMACERLFEEMP-ERNVFSWNAL 216



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%)

Query: 31  CTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           C ++   +   N FSWN  I G+   G   E +  +K+ML +G   P++ T   +   CA
Sbjct: 198 CERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACA 257

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            LG   LG  +  +    G+  ++YV NA++ ++  CG +  A +VF     ++L+SWN+
Sbjct: 258 RLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNT 317

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           +I G    G   +A+ LF  M++    PD +T IG++ AC  +
Sbjct: 318 IIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHM 360



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 10/151 (6%)

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A +VF ++PE N+  + A+  G + +    D I  F +M G+ +MP+  TF  IL +C 
Sbjct: 3   NAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCV 62

Query: 425 HGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
               + EG +     + S FR +P +   + ++D+    G +  A ++   M +  +V+ 
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVA--TTLIDMYASGGAIHAAYRVFGEM-IERNVIA 119

Query: 484 WGALFFACRLHGNVSIGER-AAMKLLELDPQ 513
           W A+     ++G ++  +   A +L +L P+
Sbjct: 120 WTAM-----INGYITCCDLVTARRLFDLAPE 145


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/583 (36%), Positives = 328/583 (56%), Gaps = 37/583 (6%)

Query: 6   LISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           LI +GFA S + A   +    ++ + ++   K+   +   +   WN  I G+ + G  + 
Sbjct: 201 LIVNGFA-SNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKT 259

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A++L  +M +  G RPD+ T   +    A +G   +G  I G+ ++ GF+  + V  A++
Sbjct: 260 ALELVLRM-QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALV 318

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG +G A  +FD    + +VSWNS+I+G+V++G P  A+ +F+ M  E+VE   V
Sbjct: 319 DMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNV 378

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T++G + ACA L D+  GR +H  + +  L   V + N+L+ MY KC ++          
Sbjct: 379 TVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRV---------- 428

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                DIA +IF++L  K +V WNA+I GY Q  R  EA+  F 
Sbjct: 429 ---------------------DIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFC 467

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           +MQ   IKPD+ T V  + A ++L  L    WIH  + +   + NV + TALVDMYAKCG
Sbjct: 468 KMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCG 527

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            +  A ++F  M ER+  T+ A+I G   HG    A+  F +M    + P+E+TFL +LS
Sbjct: 528 AVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLS 587

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLV+EG +YF  M   + L P + HY  MVDLLGR+  L EA   I+ MP+   +
Sbjct: 588 ACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAI 647

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            V+GA+  ACR+H NV +GE+AA ++ +LDP D G +VLLAN+Y  ++MW++  +VR  M
Sbjct: 648 SVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTM 707

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E++G++KTPG S +E+   ++ F     SHP+ ++IY  L  L
Sbjct: 708 EKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETL 750



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 241/507 (47%), Gaps = 42/507 (8%)

Query: 4   TGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
            GL S     ++L++ FC      +L    ++   +++     ++  ++G+     + +A
Sbjct: 103 NGLYSEHLFQTKLVSLFCKFG---SLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           V  + +M R  G RP  + +  L KVC        G EI   ++  GF  +++    V++
Sbjct: 160 VSFFCRM-RYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVN 218

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  C  +  A  +FD    R+LV WN++I+G+ ++GF + A+ L   MQ E   PD +T
Sbjct: 219 MYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSIT 278

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           ++ ++ A A +  L +GR IH Y   +G    V ++ AL+DMY KCG + +A  IFD M 
Sbjct: 279 IVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMT 338

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            KTVVS  +MI G                               YVQ      A+ +F +
Sbjct: 339 GKTVVSWNSMIDG-------------------------------YVQNGDPGAAMEIFQK 367

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M    ++   VT +  L AC+ LG ++ G ++H+ +++     +V +  +L+ MY+KC  
Sbjct: 368 MMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKR 427

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A ++F  +  +  +++ A+I G A +G+  +AI YF +M    + PD  T + ++ A
Sbjct: 428 VDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
                ++ +  K+   +     L   +   + +VD+  + G +  A +L   M     V 
Sbjct: 488 LAELSVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMD-ERHVT 545

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLE 509
            W A+      HG   +G +AA++L E
Sbjct: 546 TWNAMIDGYGTHG---LG-KAALELFE 568


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 317/563 (56%), Gaps = 37/563 (6%)

Query: 24   ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML--RNGGTRPDNFT 81
            +S  +D   K+   + + +  SWN  I G +  G    A++ + QML  R G    D  T
Sbjct: 600  KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG---VDLAT 656

Query: 82   YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
                   CA++G   LG  + G  +K  F  ++  +N ++ ++  CG+L  A   F++  
Sbjct: 657  LVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG 716

Query: 142  VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
             + +VSW SLI  +VR G   +AIRLF +M+ + V PD  +M  ++ ACA    L+ GR+
Sbjct: 717  QKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRD 776

Query: 202  IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
            +H YI ++ + L +P++NALMDMY KCG +E A                          +
Sbjct: 777  VHNYIRKNNMALCLPVSNALMDMYAKCGSMEEA--------------------------Y 810

Query: 262  LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            L     +F  +P K +V WN +IGGY +     EAL LF EMQ    +PD +T    L A
Sbjct: 811  L-----VFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPA 864

Query: 322  CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
            C  L AL+ G  IH  I +  ++  + +  AL+DMY KCG++  A  +F  +PE++ +T+
Sbjct: 865  CGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITW 924

Query: 382  TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            T +I G  +HG   +AI+ F +M   G+ PDEITF  IL AC H GL++EG  +F  M S
Sbjct: 925  TVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMIS 984

Query: 442  IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
               + PKL+HY+CMVDLL R+G L +A  LI +MP+  D  +WGAL   CR+H +V + E
Sbjct: 985  ECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAE 1044

Query: 502  RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
            + A  + EL+P ++G YVLLAN+Y ++  WEE  K+R+ + +RG++K+PGCS IEV G  
Sbjct: 1045 KVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKF 1104

Query: 562  YEFIVRDKSHPELEQIYDCLVQL 584
              F+  D +HP+ + I+  L  L
Sbjct: 1105 TTFVSADTAHPQAKSIFSLLNNL 1127



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 180/371 (48%), Gaps = 35/371 (9%)

Query: 23   SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
            S+  NL+   +    +      SW   I  ++  G   +A+ L+ +M  + G  PD ++ 
Sbjct: 700  SKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM-ESKGVSPDVYSM 758

Query: 83   PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
              +   CA       G ++  ++ K    + + V NA++ ++  CG +  A  VF +  V
Sbjct: 759  TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV 818

Query: 143  RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +++VSWN++I G+ ++  P EA++LF +MQ E   PD +TM  ++ AC  L  L +GR I
Sbjct: 819  KDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGI 877

Query: 203  HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
            H  I  +G +  + +ANAL+DMYVKCG L  A  +FD +  K +++ T MI G    G  
Sbjct: 878  HGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGL- 936

Query: 263  DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                            EA+A F +M+  GIKPD +T    L AC
Sbjct: 937  ------------------------------GNEAIATFQKMRIAGIKPDEITFTSILYAC 966

Query: 323  SQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT- 380
            S  G L++G  + +  I + N    +     +VD+ A+ GN++KA  +   MP +   T 
Sbjct: 967  SHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATI 1026

Query: 381  YTAIIGGLALH 391
            + A++ G  +H
Sbjct: 1027 WGALLCGCRIH 1037



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 203/443 (45%), Gaps = 37/443 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           N  I  F E G +R AV+L +   +   +  D   Y  + ++CA       G  +   + 
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQK---SELDLNAYSSILQLCAEHKCLQEGKMVHSVIS 478

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS-WNSLINGFVRSGFPREAI 165
             G  ++  +   ++ ++VSCG L     +FD     N V  WN +++ + + G  RE+I
Sbjct: 479 SNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI 538

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LF+ MQ   +  +  T   ++   A L  +   + IH  + + G      + N+L+  Y
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATY 598

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            K G+++SA ++FD + ++ VVS                               WN++I 
Sbjct: 599 FKSGEVDSAHKLFDELGDRDVVS-------------------------------WNSMIS 627

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           G V    S  AL  F +M    +  D  T V+ ++AC+ +G+L  G  +H    K  F+ 
Sbjct: 628 GCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR 687

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
            V+    L+DMY+KCGN+  A+Q F +M ++  +++T++I      G   DAI  F EM 
Sbjct: 688 EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEME 747

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ PD  +   +L AC  G  +D+GR     +     ++  L   + ++D+  + G +
Sbjct: 748 SKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK-NNMALCLPVSNALMDMYAKCGSM 806

Query: 466 EEAEQLIRSMPMAADVVVWGALF 488
           EEA  +   +P+  D+V W  + 
Sbjct: 807 EEAYLVFSQIPV-KDIVSWNTMI 828



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 152/343 (44%), Gaps = 36/343 (10%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N+ I  F   G  R A+ L R  Q  + E D      ++  CA+ + L  G+ +H  IS 
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQ--KSELDLNAYSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +G+ +   L   L+ MYV CG L     IFD +                           
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHI--------------------------- 512

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
              L +  V  WN ++  Y +    +E++ LF +MQ  GI  ++ T    L   + LG +
Sbjct: 513 ---LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRV 569

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
            +   IH  + K  F     +  +L+  Y K G +  A ++F E+ +R+ +++ ++I G 
Sbjct: 570 GECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSP 447
            ++G +  A+ +F +M+ + +  D  T +  ++AC + G +  GR    Q + + F  S 
Sbjct: 630 VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACF--SR 687

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           ++   + ++D+  + G L +A Q    M     VV W +L  A
Sbjct: 688 EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT-VVSWTSLIAA 729



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 13/220 (5%)

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N  I  + +    + A+ L    Q + +  +A +++  L  C++   L +G  +H  I  
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSI--LQLCAEHKCLQEGKMVHSVISS 479

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVF-HEMPERNSLTYTAIIGGLALHGKALDAIS 399
               +  VLG  LV MY  CG + +  ++F H + +     +  ++   A  G   ++I 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            F +M  +G+  +  TF  IL      G V E ++       +++L      Y+ +V+ L
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHG---CVYKLG--FGSYNTVVNSL 594

Query: 460 ----GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
                +SG ++ A +L   +    DVV W ++   C ++G
Sbjct: 595 IATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISGCVMNG 633


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/583 (34%), Positives = 333/583 (57%), Gaps = 37/583 (6%)

Query: 6   LISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           LI++ FA + + A   +    ++ + +D   K+   +   +  SWN  I GF + G  ++
Sbjct: 173 LITNSFA-ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A++L  +M ++ G RPD+ T   +    A +GL  +G  I G+ ++ GF   + +  A+ 
Sbjct: 232 ALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG +  A  +FD    + +VSWNS+++G+V++G P +AI +F  M  E ++P  V
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T++  + ACA L DL  G+ +H ++ +  L   + + N+L+ MY KC ++          
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRV---------- 400

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                DIA  IF++L  +  V WNA+I GY Q  R  EAL  F 
Sbjct: 401 ---------------------DIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFS 439

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM++ G+KPD+ T V  + A ++L       WIH  I +   + N+ + TALVDMY+KCG
Sbjct: 440 EMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCG 499

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            I  A ++F  + +R+ +T+ A+I G   HG    A+  F +M    + P++IT+L ++S
Sbjct: 500 AIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLVDEG ++F  M   + L P + HY  MVDLLGR+G ++EA   I +MP++  +
Sbjct: 560 ACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGI 619

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            V+GA+  AC++H N+ +GE+AA KL EL+P + G +VLLAN+Y  ++ W +  +VRK M
Sbjct: 620 TVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E++G++KTPGCS +E+   ++ F     +HP+ ++IY  L +L
Sbjct: 680 EKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEEL 722



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 18/281 (6%)

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T ++  ++K+G ++ A ++F+ + +K    ++ ++ GY +    + ALA    M+   +K
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P      + L  C     L  G  IH  +   +F  NV   T +V+MYAKC  I  A ++
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  MPER+ +++  II G + +G A  A+     M   G  PD IT + +L A    GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 430 DEG--------RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
             G        R  FA++ +I          + + D+  + G +E A  +   M     V
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNI---------STALADMYSKCGSVETARLIFDGMDQKT-V 314

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           V W ++      +G          K+LE     +G+ ++ A
Sbjct: 315 VSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEA 355


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/563 (36%), Positives = 324/563 (57%), Gaps = 2/563 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S  +D+  +I  ++   +  SWN+ I    ++G++REA+D+   M    G RPD+ TY
Sbjct: 236 AKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDM-HGKGVRPDSTTY 294

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                 CA L     G ++   V++    +D YV +A++ ++  CG    A  VF     
Sbjct: 295 TSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRD 354

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           RN VSW  LI GF++ G   E++ LF  M+ E +  D+  +  ++S C    D+ LG ++
Sbjct: 355 RNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQL 414

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    +SG T  V ++N+L+ MY KCG L++AE IF+ M  + +VS T MI  Y++ G +
Sbjct: 415 HSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNI 474

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSA 321
             AR+ FDD+  + V+ WNA++G Y+Q    ++ L ++ +M     + PD VT V     
Sbjct: 475 AKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRG 534

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ +GA   G  I     K    L+  +  A++ MY+KCG I++A + F  +  ++ +++
Sbjct: 535 CADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSW 594

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            A+I G + HG    AI  F +++  G  PD I+++ +LS C H GLV+EG+ YF  M  
Sbjct: 595 NAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKR 654

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
              +SP L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC+ HGN  + E
Sbjct: 655 DHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAE 714

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
            AA  L +LD   SG Y+LLA MY D+   +++ +VRK+M ++G++K+PG S +EVN  +
Sbjct: 715 LAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRV 774

Query: 562 YEFIVRDKSHPELEQIYDCLVQL 584
           + F   D SHP++  I + L +L
Sbjct: 775 HVFKAEDVSHPQVIAIREKLDEL 797



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 207/390 (53%), Gaps = 9/390 (2%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM- 171
           ++  HN +++ +   G L  A  +F     R++ SWN++++G+ +SG    A+ +F  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           Q     P+  T   ++ +C  L    +  ++   +S+        +  AL+DM V+CG +
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A + F  + N T++   +M+VGYAK   +D A +IF  +PE+ VV WN +I    ++ 
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R +EAL +  +M   G++PD+ T    L+AC++L +L+ G  +H  + +   +++  + +
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVAS 330

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           A+V++YAKCG   +A +VF  + +RNS+++T +IGG   +G   +++  F++M    +  
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAV 390

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY---SCMVDLLGRSGLLEEA 468
           D+     ++S CC+   +  G    +Q+ S+   S   +     + ++ +  + G L+ A
Sbjct: 391 DQFALATLISGCCNTMDICLG----SQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA 446

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           E LI +     D+V W  +  A    GN++
Sbjct: 447 E-LIFNFMAERDIVSWTGMITAYSQVGNIA 475



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 223/487 (45%), Gaps = 42/487 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ ++G+   A+D++  M + G + P+ FT+  + K C +LG   +  ++ G 
Sbjct: 125 SWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGL 184

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACN----------------------------- 135
           + K     D  V  A++ + V CG +  A                               
Sbjct: 185 LSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHA 244

Query: 136 --VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             +F     R++VSWN +I+   +SG  REA+ +  DM  + V PD  T    ++ACA+L
Sbjct: 245 LEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARL 304

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  +   +   +A+A++++Y KCG  + A+ +F S+ ++  VS T +I
Sbjct: 305 SSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLI 364

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA----TGIK 309
            G+ ++G    + ++F+ +  + +      +   +    +   + L  ++ +    +G  
Sbjct: 365 GGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHT 424

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
              V +   +S  ++ G L +   I  F+ +     ++V  T ++  Y++ GNIAKA + 
Sbjct: 425 RAVVVSNSLISMYAKCGNLQNAELIFNFMAER----DIVSWTGMITAYSQVGNIAKAREF 480

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGL 428
           F +M  RN +T+ A++G    HG   D +  +S+M+    ++PD +T++ +   C   G 
Sbjct: 481 FDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGA 540

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
              G +       +  L       + ++ +  + G + EA +    +    D+V W A+ 
Sbjct: 541 NKLGDQIIGHTVKV-GLILDTSVVNAVITMYSKCGRISEARKAFDFLS-RKDLVSWNAMI 598

Query: 489 FACRLHG 495
                HG
Sbjct: 599 TGYSQHG 605



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 156/342 (45%), Gaps = 42/342 (12%)

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-DSMVNKTVV 247
           +C     L   R +H  +   GL   V L N L+  Y+ CG L  A  +  D +    V+
Sbjct: 34  SCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVI 93

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           +   M+ GYAK G L  A ++F  +P + V  WN I+ GY Q+ +   AL +F  M+ TG
Sbjct: 94  THNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTG 153

Query: 308 IK-PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG----- 361
              P+A T    + +C  LG  +  + +   + K +   +  + TALVDM  +CG     
Sbjct: 154 DSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFA 213

Query: 362 --------------------------NIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
                                      +  AL++F  MPER+ +++  +I  L+  G+  
Sbjct: 214 SKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVR 273

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--S 453
           +A+    +M G G+ PD  T+   L+AC     ++ G++   Q   + R  P +  Y  S
Sbjct: 274 EALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQ---VIRNLPHIDPYVAS 330

Query: 454 CMVDLLGRSGLLEEAEQLIRSM----PMAADVVVWGALFFAC 491
            MV+L  + G  +EA+++  S+     ++  V++ G L + C
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGC 372



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +   ++   N  +WN  +  +++ G   + + +Y  ML      PD  
Sbjct: 467 AYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWV 526

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LF+ CA +G   LG +I GH +K+G  +D  V NAVI ++  CG +  A   FD  
Sbjct: 527 TYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFL 586

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             ++LVSWN++I G+ + G  ++AI +F D+  +  +PD ++ + ++S C+      L  
Sbjct: 587 SRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSH---SGLVE 643

Query: 201 EIHWYIS----ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           E  +Y      +  ++  +   + ++D+  + G L  A+ + D M  K        ++  
Sbjct: 644 EGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSA 703

Query: 257 AKF----GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            K        ++A K   DL       +  +   Y  A +S ++  +   M+  GIK
Sbjct: 704 CKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIK 760


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 337/580 (58%), Gaps = 36/580 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +S SW   I G+ + G+  +A+ ++  M+++    P  FT   +   CA+ G R +G ++
Sbjct: 71  DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDK-VLPTQFTLTNVLASCAATGSRGIGKKV 129

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN----------------- 144
              V+KLG    + V N++++++   GDL +A  VFD   +RN                 
Sbjct: 130 HSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRV 189

Query: 145 --------------LVSWNSLINGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSA 189
                         +VSWNS+I G  + GF  EA++ F   ++   ++PD  ++   +SA
Sbjct: 190 DLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSA 249

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS--MVNKTVV 247
           CA LE L+ G++IH YI  +    +  + NAL+ MY K G +E A  I +   + +  V+
Sbjct: 250 CANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVI 309

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           + T ++ GY K G +  AR+IF+ L +  VV W A+I GYVQ   + +A+ +F  M + G
Sbjct: 310 AFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEG 369

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P++ T    LSA S + +L+ G  IH    +    L+  +G AL  MYAK G+I  A 
Sbjct: 370 PRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGAR 429

Query: 368 QVFHEMPE-RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           +VF+ + + R+++++T++I  LA HG   +AI  F +M+ +G+ PD IT++G+LSAC HG
Sbjct: 430 KVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHG 489

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV++GR YF  M ++ ++ P L HY+CMVDL GR+GLL+EA + + +MPM  DV+ WG+
Sbjct: 490 GLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGS 549

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  +C+++ NV + + AA +LL ++P +SG Y  LAN+Y     W++A K+RK+M+ RGV
Sbjct: 550 LLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGV 609

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +K  G S +++    + F V D  HP+ ++IY  + ++ +
Sbjct: 610 KKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWK 649



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 206/421 (48%), Gaps = 40/421 (9%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N ++  +   G L  A  VFD   VR+ VSW ++I G+ + G   +AI++F DM  ++V 
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P + T+  ++++CA      +G+++H ++ + GL   VP+AN+L++MY K G L+ A+ +
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M  +   S   MI  +   G +D+A   F+ L E+ +V WN++I G  Q     EAL
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 298 ALFHE-MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
             F   ++ T +KPD  +    LSAC+ L  L  G  IH +I +  F+ +  +G AL+ M
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 357 YAKC---------------------------------GNIAKALQVFHEMPERNSLTYTA 383
           YAK                                  G+I  A Q+F+ + + + + +TA
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTA 344

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSI 442
           +I G   +G   DAI  F  M+  G  P+  T   +LSA      ++ G++  A  + S 
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             LSP + +   +  +  ++G +  A ++   +    D V W ++  A   HG   +GE 
Sbjct: 405 EALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHG---LGEE 459

Query: 503 A 503
           A
Sbjct: 460 A 460



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 45/209 (21%)

Query: 35  LFNV--QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +FN+  QN ++ SW   I    + G   EA++L++QML   G +PD+ TY  +   C   
Sbjct: 431 VFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML-TLGIKPDHITYVGVLSACTHG 489

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           GL   G   F                          DL    +  D +    L  +  ++
Sbjct: 490 GLVEQGRSYF--------------------------DLMKNVHKIDPT----LSHYACMV 519

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           + F R+G  +EA +   +M +   EPD +    ++S+C   ++++L +     ++   L 
Sbjct: 520 DLFGRAGLLQEAYKFVENMPM---EPDVIAWGSLLSSCKVYKNVDLAK-----VAAERLL 571

Query: 213 LTVP----LANALMDMYVKCGKLESAEEI 237
           L  P      +AL ++Y  CGK + A +I
Sbjct: 572 LIEPNNSGAYSALANVYSSCGKWDDAAKI 600


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 327/587 (55%), Gaps = 14/587 (2%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F+ + L++ CA       D    +   + +P+  S+N  +    + G+  +A+     M 
Sbjct: 82  FSYNALLSACA--RLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMH 139

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
            +     + +++      CAS      G ++   V K     D+Y+  A++ ++  C   
Sbjct: 140 ADDFVL-NAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERP 198

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  VFD    RN+VSWNSLI  + ++G   EA+ LF  M  +   PDEVT+  ++SAC
Sbjct: 199 EEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSAC 258

Query: 191 AQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           A L     GR++H  + +S      + L NAL+DMY KCG+   A+ +FD M  ++VVS 
Sbjct: 259 AGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSE 318

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T+MI GYAK   +  A+ +F  + EK VV WN +I  Y      +EAL LF  ++   + 
Sbjct: 319 TSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVW 378

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN------VVLGTALVDMYAKCGNI 363
           P   T  + L+AC+ L  L  G   H  + KE F  +      V +G +LVDMY K G+I
Sbjct: 379 PTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSI 438

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           +   +VF  M  R+++++ A+I G A +G+A DA+  F  M+     PD +T +G+LSAC
Sbjct: 439 SDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSAC 498

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLV EGR+YF  M+    + P   HY+CM+DLLGR+G L+E E+LI +MPM  D V+
Sbjct: 499 GHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVL 558

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W +L  ACRLH N+ +GE AA KL ELDP +SG YVLL+NMY +   W +  +VR+ M+ 
Sbjct: 559 WASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKH 618

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL----VQLTR 586
           RGV K PGCS IE+   +  F+ RD  HP   +I+D L    +Q++R
Sbjct: 619 RGVSKQPGCSWIEIGRKVNVFLARDNIHPCRNEIHDTLRIIQMQMSR 665



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 127/261 (48%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+  Y + G L  A  +FD M ++   S   ++   A+ G  D A  +F  +P+  
Sbjct: 52  LLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPD 111

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              +NA++    Q  R  +AL     M A     +A +    LSAC+   A   G  +H 
Sbjct: 112 QCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA 171

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + K +   +V +GTALVDMYAKC    +A +VF  MPERN +++ ++I     +G   +
Sbjct: 172 LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDE 231

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A++ F  M+  G +PDE+T   ++SAC       EGR+   +M    R    +   + +V
Sbjct: 232 ALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALV 291

Query: 457 DLLGRSGLLEEAEQLIRSMPM 477
           D+  + G   EA+ +   M +
Sbjct: 292 DMYAKCGRTWEAKCVFDRMAI 312



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 153/364 (42%), Gaps = 72/364 (19%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           +F  N  +  +   G + +A  ++     +G    + F+Y  L   CA LG       +F
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVF-----DGMPHRNTFSYNALLSACARLGRADDALALF 104

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           G +     D D   +NAV+      G  G                               
Sbjct: 105 GAIP----DPDQCSYNAVVAALAQHGRGG------------------------------- 129

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           +A+R    M  +    +  +    +SACA  +    G ++H  +++S     V +  AL+
Sbjct: 130 DALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALV 189

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY KC + E A+++FD+M  + +VS  ++I  Y + G +D                   
Sbjct: 190 DMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVD------------------- 230

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKE 341
                       EALALF  M   G  PD VT    +SAC+ L A  +G  +H R ++ +
Sbjct: 231 ------------EALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSD 278

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  ++VL  ALVDMYAKCG   +A  VF  M  R+ ++ T++I G A      DA + F
Sbjct: 279 RFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVF 338

Query: 402 SEMI 405
            +M+
Sbjct: 339 LQMV 342


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 313/551 (56%), Gaps = 34/551 (6%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +FN V+  N  SW   I GF + G+M EA   + +M+ +G   P+  T+  +   C+   
Sbjct: 363 VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG-IEPNRVTFMSILGACSRPS 421

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G +I   ++K G+  D  V  A++ ++  CG L  A NVF+    +N+V+WN++I 
Sbjct: 422 ALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMIT 481

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
            +V+      A+  F+ +  E ++PD  T   +++ C   + L LG+ +   I  +G   
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFES 541

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + + NAL+ M+V CG L SA                                 +F+D+P
Sbjct: 542 DLHIRNALVSMFVNCGDLMSA-------------------------------MNLFNDMP 570

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           E+ +V WN II G+VQ   ++ A   F  MQ +G+KPD +T    L+AC+   AL +G  
Sbjct: 571 ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR 630

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  I +   + +VV+GT L+ MY KCG+I  A  VFH +P++N  ++T++I G A HG+
Sbjct: 631 LHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGR 690

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +A+  F +M   G+ PD ITF+G LSAC H GL+ EG  +F  M   F + P+++HY 
Sbjct: 691 GKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYG 749

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CMVDL GR+GLL EA + I  M +  D  +WGAL  AC++H +V + E+ A K LELDP 
Sbjct: 750 CMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPN 809

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           D G+YV+L+N+Y  + MW+E  K+RK+M +RGV K PG S IEV+G ++ F   DK+HP+
Sbjct: 810 DDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQ 869

Query: 574 LEQIYDCLVQL 584
           +E+I+  L +L
Sbjct: 870 IEEIHAELGRL 880



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 234/469 (49%), Gaps = 34/469 (7%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N +   +I   + + + +SWN+ + G+++  +  EA  L++QM+++G  +PD +T+  + 
Sbjct: 154 NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG-VKPDKYTFVYML 212

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA       G E+F  +L  G+D D++V  A+I++ + CG +  A  VF+    R+L+
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +W S+I G  R    ++A  LF+ M+ E V+PD+V  + ++ AC   E L  G+ +H  +
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            E GL   + +  AL+ MY KCG +E A E+F+ +  + VVS T MI G+A+ G      
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHG------ 386

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                    R +EA   F++M  +GI+P+ VT +  L ACS+  
Sbjct: 387 -------------------------RMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPS 421

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           AL  G  IH  I K  +  +  + TAL+ MYAKCG++  A  VF  + ++N + + A+I 
Sbjct: 422 ALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMIT 481

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
               H K  +A++ F  ++  G+ PD  TF  IL+ C     ++ G K+   +       
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFE 540

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             L   + +V +    G L  A  L   MP   D+V W  +      HG
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHG 588



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 226/468 (48%), Gaps = 34/468 (7%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+  N+   +  +W   I G     + ++A +L+ Q++   G +PD   +  L K
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLF-QVMEEEGVQPDKVAFVSLLK 314

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C        G  +   + ++G D ++YV  A++ ++  CG +  A  VF+    RN+VS
Sbjct: 315 ACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W ++I GF + G   EA   F  M    +EP+ VT + ++ AC++   L  GR+IH  I 
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++G      +  AL+ MY KCG L  A  +F+ +  + VV+                   
Sbjct: 435 KAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA------------------- 475

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA+I  YVQ ++   A+A F  +   GIKPD+ T    L+ C    A
Sbjct: 476 ------------WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G W+   I +  F  ++ +  ALV M+  CG++  A+ +F++MPER+ +++  II G
Sbjct: 524 LELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAG 583

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
              HG+   A  YF  M   G+ PD+ITF G+L+AC     + EGR+  A ++    L  
Sbjct: 584 FVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA-ALDC 642

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +   + ++ +  + G +++A  +  ++P   +V  W ++      HG
Sbjct: 643 DVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHG 689



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 233/469 (49%), Gaps = 36/469 (7%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  L ++C        G  I  H+       D+++ N +I ++  CG+   A  +FDE 
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +++ SWN L+ G+V+     EA RL   M  + V+PD+ T + M++ACA  ++++ G 
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E+   I  +G    + +  AL++M++KCG +                             
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGV----------------------------- 256

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
             D A K+F++LP + ++ W ++I G  + ++ K+A  LF  M+  G++PD V  V  L 
Sbjct: 257 --DDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLK 314

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+   AL+ G  +H  +++   +  + +GTAL+ MY KCG++  AL+VF+ +  RN ++
Sbjct: 315 ACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +TA+I G A HG+  +A  +F++MI  G+ P+ +TF+ IL AC     + +GR+   ++ 
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
               ++   +  + ++ +  + G L +A  +   +    +VV W A+  A   H      
Sbjct: 435 KAGYITDD-RVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNA 492

Query: 501 ERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
                 LL+  + P DS  +  + N+ +  +  E    V+ ++   G E
Sbjct: 493 VATFQALLKEGIKP-DSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 182/356 (51%), Gaps = 33/356 (9%)

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           ++N    N+ +N   ++G   EA+ +   +    ++    T   ++  C + ++L  G  
Sbjct: 66  IKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           IH +I  S +   + + N L+ MY KCG   SA                           
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSA--------------------------- 158

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
               ++IFD++P+K V  WN ++GGYVQ +R +EA  L  +M   G+KPD  T V+ L+A
Sbjct: 159 ----KQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNA 214

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+    +D G  +   I    ++ ++ +GTAL++M+ KCG +  AL+VF+ +P R+ +T+
Sbjct: 215 CADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITW 274

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           T++I GLA H +   A + F  M   G+ PD++ F+ +L AC H   +++G++  A+M  
Sbjct: 275 TSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKE 334

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           +  L  ++   + ++ +  + G +E+A ++  ++    +VV W A+      HG +
Sbjct: 335 V-GLDTEIYVGTALLSMYTKCGSMEDALEVF-NLVKGRNVVSWTAMIAGFAQHGRM 388



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 134/301 (44%), Gaps = 36/301 (11%)

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA +    +A +  EA+ +   + +  I+    T    L  C +   L DG  IH  I+ 
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                ++ +   L+ MYAKCGN   A Q+F EMP+++  ++  ++GG   H +  +A   
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS------------------- 441
             +M+  G+ PD+ TF+ +L+AC     VD+G + F+ + +                   
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 442 ---------IFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMP---MAADVVVWGAL 487
                    +F   P+  L  ++ M+  L R    ++A  L + M    +  D V + +L
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSL 312

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYV--LLANMYRDSNMWEEAGKVRKMMEERG 545
             AC     +  G+R   ++ E+   D+ IYV   L +MY      E+A +V  +++ R 
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVG-LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 546 V 546
           V
Sbjct: 372 V 372



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    +  N+   N +SW   I G+ + G+ +EA++L+ QM +  G +PD  T+    
Sbjct: 659 SIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQM-QQEGVKPDWITFVGAL 717

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA  GL           +K G           +H F S  D  +   +    C+ +L 
Sbjct: 718 SACAHAGL-----------IKEG-----------LHHFESMKDFNIEPRMEHYGCMVDL- 754

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
                   F R+G   EA+     MQ   V+PD      ++ AC    D+ L  ++
Sbjct: 755 --------FGRAGLLHEAVEFINKMQ---VKPDSRLWGALLGACQVHLDVELAEKV 799


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 324/573 (56%), Gaps = 40/573 (6%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLE--TGKMREAVDLYKQMLR 71
           SRL+  C  + ++   Y  ++L  +Q  +   W+  I  F    T   R +   Y+ M R
Sbjct: 39  SRLLRRCCTAATQ-FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRR 97

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLG-YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           NG   P   T+P L K  A   LR    ++   H++K G D D +V N++I  + S G  
Sbjct: 98  NG-VIPSRHTFPPLLK--AVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLF 154

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FD +  +++V+W ++I+GFVR+G   EA+  F +M+   V  +E+T++ ++ A 
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAA 214

Query: 191 AQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            ++ED+  GR +H    E+G +   V + ++L+DMY KC                   SC
Sbjct: 215 GKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC-------------------SC 255

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                        D A+K+FD++P + VV W A+I GYVQ++   + + +F EM  + + 
Sbjct: 256 ------------YDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+  T    LSAC+ +GAL  G  +H ++ K +  +N   GT L+D+Y KCG + +A+ V
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  + E+N  T+TA+I G A HG A DA   F  M+   + P+E+TF+ +LSAC HGGLV
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLV 423

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           +EGR+ F  M   F + PK  HY+CMVDL GR GLLEEA+ LI  MPM    VVWGALF 
Sbjct: 424 EEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFG 483

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           +C LH +  +G+ AA ++++L P  SG Y LLAN+Y +S  W+E  +VRK M+++ V K+
Sbjct: 484 SCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKS 543

Query: 550 PGCSSIEVNGLLYEFIVRDKSHP-ELEQIYDCL 581
           PG S IEV G L EFI  D   P E + +Y  L
Sbjct: 544 PGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTL 576


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/521 (39%), Positives = 305/521 (58%), Gaps = 8/521 (1%)

Query: 72  NGGTRPDNFTYPLLFKVCASL-GLRFLGYEIFGHVLKLGFDVDMYVHNA--VIHVFVSCG 128
           N     +  T+  L + C SL  L+    +I G  + LG       H A  +++ +   G
Sbjct: 247 NRNAHMNTQTFYFLLQKCGSLEKLK----QIHGKAVTLGLLCSKRQHLACKLLNTYTQLG 302

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
               A  VF+     ++VSW  LI+ ++ +  P +A  +F  +    + PD   ++G VS
Sbjct: 303 SPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVS 362

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           AC   +DL+ GR +H  +    L     + NAL+DMY + G +E A  +F +M  K V S
Sbjct: 363 ACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSS 422

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            T+++ G+ K   ++ AR+IFD++P +  V W A+I GYVQ +     L LF EM+A G 
Sbjct: 423 WTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGK 482

Query: 309 K-PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
             P  +T V  LS C+ +GA D G  +H ++ K N +L+V +  AL+DMYAK G +  AL
Sbjct: 483 DWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLAL 542

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           ++F EMP+R+  ++T +I GLALHGK   A+  FS+M   G  P+E+T L +LSAC H G
Sbjct: 543 KIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAG 602

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LV EGR  F +M     + PK++HY CMVDLLGR+GLL EA++LI  MP+  D V+W +L
Sbjct: 603 LVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSL 662

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             AC +HGN+++ E A   ++EL+P D G+Y+LL N+Y  ++ WE+A K RK M +R V+
Sbjct: 663 LSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVK 722

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           K PGCS +EVNG+++EF+  D  H     +Y  L  +T   
Sbjct: 723 KKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQM 763



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 187/415 (45%), Gaps = 68/415 (16%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+  ++QNP+  SW   I  +L T +  +A  ++  +  + G RPD+F        C   
Sbjct: 309 KVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLF-HSGLRPDSFCVVGAVSACGHR 367

Query: 93  GLRFLGYEIFGHVLK--LGFD-------VDMYVHNAVIHV-------------------- 123
                G  + G V +  LG D       +DMY  +  I V                    
Sbjct: 368 KDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLL 427

Query: 124 --FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDE 180
             F+ C D+  A  +FDE  +RN VSW ++I G+V+   P   + LF++M+ E  + P  
Sbjct: 428 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTV 487

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T++ ++S CA +   +LG  +H Y++++ L L V + NALMDMY K G L  A +IF  
Sbjct: 488 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 547

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V S TTMI G A  G                               +   AL  F
Sbjct: 548 MPKRDVFSWTTMISGLALHG-------------------------------KGTHALEAF 576

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAK 359
            +M  +G  P+ VT +  LSACS  G + +G  +  + ++       +     +VD+  +
Sbjct: 577 SDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGR 636

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
            G + +A ++   MP + +S+ + +++    +HG    A++  +  + + L PD+
Sbjct: 637 AGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNL--ALAEMAGKMIIELEPDD 689



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 134/277 (48%), Gaps = 13/277 (4%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS SW   I G+++       ++L+++M   G   P   T   +   CA +G   LG  +
Sbjct: 450 NSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSV 509

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G+V K   D+D+ V+NA++ ++   G L LA  +F E   R++ SW ++I+G    G  
Sbjct: 510 HGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKG 569

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-SGLTLTVPLANA 220
             A+  F DM      P+EVT++ ++SAC+    +  GR +   + +  G+   +     
Sbjct: 570 THALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGC 629

Query: 221 LMDMYVKCGKLESAEEIFDSMVNK--TVV--SCTTMIVGYAKFGFLDIARKIFDDL-PEK 275
           ++D+  + G L  A+E+ + M  K  +V+  S  +  + +      ++A K+  +L P+ 
Sbjct: 630 MVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDD 689

Query: 276 ---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
              Y++ WN     Y  A R ++AL     M+   +K
Sbjct: 690 DGVYILLWNI----YCSASRWEDALKARKAMRDRRVK 722


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 313/534 (58%), Gaps = 32/534 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  I G+++ G M EA  L+ +M+ +   +PD+ T+     + +       G EI  +
Sbjct: 316 TWNGMISGYVQNGFMDEASCLFHEMI-SARMKPDSITFSSFLPLLSEGATLRQGKEIHCY 374

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +++ G  +D+++ +A+I ++  C D+ +A  +FD+    ++V   ++I+G+V +G    A
Sbjct: 375 IIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNA 434

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +FR +  ER+  + VT+  ++ ACA L  L LG+E+H +I ++G   +  + +A+MDM
Sbjct: 435 LEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDM 494

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG+L                               D+A + F  + +K  V WN++I
Sbjct: 495 YAKCGRL-------------------------------DLAHQTFIGISDKDAVCWNSMI 523

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
               Q  + +EA+ LF +M   G K D V+    LSAC+ L AL  G  IH F+ +  F 
Sbjct: 524 TSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFR 583

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++   +AL+DMY+KCGN+  A +VF  M E+N +++ +II     HG+  D+++ F  M
Sbjct: 584 SDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGM 643

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
           +G G+ PD +TFL I+SAC H G VDEG  YF  M+    +  +++HY+CMVDL GR+G 
Sbjct: 644 LGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGR 703

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L EA  +I SMP + D  VWG L  ACRLHGNV + E A+  L +LDPQ+SG YVLL+N+
Sbjct: 704 LNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNV 763

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           + ++  WE   K+R +M+ERGV+K PGCS I+VN   + F+  D+SHP+  QIY
Sbjct: 764 HANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIY 817



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 238/501 (47%), Gaps = 48/501 (9%)

Query: 1   MTITGLISHGFAPSRLIA---FC-AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           M + G+  +G   ++L+     C A  ++KN+ Y  ++        S  WN  IRGF   
Sbjct: 72  MLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC------SEPWNWMIRGFTMM 125

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G+   A+  Y +ML   GT PD +T+P + K C  L    LG  +   +  +GF++D++V
Sbjct: 126 GQFDFALLFYFKML-GCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFV 184

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            +++I  +   G +  A  +FD    ++ V WN ++NG+V++G    A  +F +M+    
Sbjct: 185 GSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET 244

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P+ VT   ++S CA    +N G ++H  +  SGL +  P+AN L+ MY KCG L  A  
Sbjct: 245 NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARR 304

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD M    +V+   MI GY + GF+D                               EA
Sbjct: 305 LFDMMPKTDLVTWNGMISGYVQNGFMD-------------------------------EA 333

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
             LFHEM +  +KPD++T    L   S+   L  G  IH +I +   +L+V L +AL+D+
Sbjct: 334 SCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDI 393

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KC ++  A ++F +    + +  TA+I G  L+G   +A+  F  ++   +  + +T 
Sbjct: 394 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTL 453

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRS 474
             +L AC     +  G++       I +       Y  S ++D+  + G L+ A Q    
Sbjct: 454 ASVLPACAGLAALTLGKELHGH---ILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIG 510

Query: 475 MPMAADVVVWGALFFACRLHG 495
           +    D V W ++  +C  +G
Sbjct: 511 IS-DKDAVCWNSMITSCSQNG 530



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 37/336 (11%)

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVT--MIGMVSACAQLEDLNLGREIHWYISESGLT 212
           F    F   ++ + + +Q      D +   ++ ++  C     L+ GR+ H  +  +G+ 
Sbjct: 19  FKLKSFHTNSVNIGKPLQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIG 78

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               L   L+ MYV CG                               FLD A+ IF  L
Sbjct: 79  YNGILGTKLLGMYVLCG------------------------------AFLD-AKNIFYQL 107

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                 PWN +I G+    +   AL  + +M   G  PD  T  + + AC  L ++  G 
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H  I+   F L+V +G++L+  Y++ G I  A  +F  MP ++ + +  ++ G   +G
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKH 451
              +A   F EM      P+ +TF  +LS C    +++ G +     +SS   +   +  
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA- 286

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + ++ +  + G L +A +L   MP   D+V W  +
Sbjct: 287 -NTLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGM 320



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 23/198 (11%)

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           A   V  L  C+    L  G   H  +       N +LGT L+ MY  CG    A  +F+
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFY 105

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL--- 428
           ++    S  +  +I G  + G+   A+ ++ +M+G G +PD+ TF  ++ AC  GGL   
Sbjct: 106 QLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC--GGLNSV 163

Query: 429 -----VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
                V +  ++      +F  S  +K YS        +G + +A  L   MP + D V+
Sbjct: 164 ALGRVVHDKIQFMGFELDVFVGSSLIKFYS-------ENGCIHDARYLFDRMP-SKDGVL 215

Query: 484 WGALFFACRLHGNVSIGE 501
           W  +     L+G V  G+
Sbjct: 216 WNVM-----LNGYVKNGD 228


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/505 (38%), Positives = 294/505 (58%), Gaps = 39/505 (7%)

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
            TYP + K C    + + G  +  HV+K GF+ D Y+ N++IH++ +  DLG A  +F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              R++VSWN++I+G+V+ G       +F  M    V                       
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----------------------- 97

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
             I W              N +++ Y   GK++ A+ +FD M  + +VS  +M+ G+ K 
Sbjct: 98  --ISW--------------NTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKC 141

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G ++ A  +F ++P + VV WN+++  Y Q  +  EALALF +M+A G+KP   T V  L
Sbjct: 142 GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 201

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC+ LGALD G+ +H +I      +N ++GTALVDMYAKCG I+ A QVF+ M  ++ L
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
            +  II G+A+HG   +A   F EM    + P++ITF+ +LSAC H G+VDEG+K    M
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 321

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
           SS + + PK++HY C++DLL R+GLLEEA +LI +MPM  +    GAL   CR+HGN  +
Sbjct: 322 SSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFEL 381

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
           GE    +L+ L P  SG Y+LL+N+Y  +  W++A KVR +M+  G+ K PG S IE+ G
Sbjct: 382 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 441

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQL 584
           +++ F+  D SHPE  +IYD L ++
Sbjct: 442 MVHRFVAGDWSHPESNKIYDKLNEI 466



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 190/400 (47%), Gaps = 57/400 (14%)

Query: 4   TGLISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           T ++  GF     I    I   +  K+L    ++     + +  SWN  I G+++ G+M 
Sbjct: 24  THVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMG 83

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV--LKLGFD----VDM 114
               ++ +M+       D  ++  +            GY I G +   K  FD     ++
Sbjct: 84  HTRMVFDRMVCR-----DVISWNTIIN----------GYAIVGKIDEAKRLFDEMPERNL 128

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
              N+++  FV CG++  A  +F E   R++VSWNS++  + + G P EA+ LF  M+  
Sbjct: 129 VSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 188

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            V+P E T++ ++SACA L  L+ G  +H YI+++ + +   +  AL+DMY KCGK+  A
Sbjct: 189 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 248

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            ++F++M +K V++  T+I G A  G +  A++                           
Sbjct: 249 TQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQ--------------------------- 281

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTAL 353
               LF EM+   ++P+ +T V  LSACS  G +D+G  +   +         V     +
Sbjct: 282 ----LFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCV 337

Query: 354 VDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           +D+ A+ G + +A+++   MP E N     A++GG  +HG
Sbjct: 338 IDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHG 377



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 135/269 (50%), Gaps = 6/269 (2%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  +  + + GK  EA+ L+ QM R  G +P   T   L   CA LG    G  +  +
Sbjct: 161 SWNSMLACYAQCGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTY 219

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +     +V+  V  A++ ++  CG + LA  VF+    +++++WN++I G    G  +EA
Sbjct: 220 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEA 279

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMD 223
            +LF++M+   VEP+++T + M+SAC+    ++ G+++   +S S G+   V   + ++D
Sbjct: 280 QQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVID 339

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARKIFDDLPEKYVVP 279
           +  + G LE A E+  +M  +   S    ++G    +  F   ++  K   +L   +   
Sbjct: 340 LLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGR 399

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGI 308
           +  +   Y  AK+  +A  + + M+  GI
Sbjct: 400 YILLSNIYAAAKKWDDARKVRNLMKVNGI 428


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/432 (43%), Positives = 279/432 (64%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS +        P +AI LF  ++   V PD  T   ++ AC  L DL+ GR +H  + 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G    + L N ++ +Y  CG++  A  +F+ M  + VV+   MI    K G  + A  
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F  +PE+ V  W ++I GYVQ  ++KEA+ LF +M+  G+K + VT V  L+AC+ LGA
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           LD G+ IH +  +  F  NV +   L+DMY KCG + +A +VF EM ER  ++++A+IGG
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGG 335

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA+HG+A +A+  FS+M  VG+ P+ +TF+G+L AC H GL+ EGR++FA M+  + + P
Sbjct: 336 LAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIP 395

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           +++HY CMVDLL R+GLL EA + I +MPM  + VVWGAL  ACR+H NV + E A   L
Sbjct: 396 QIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           LELDP + G YV+L+N+Y ++  WE+  +VRK M++R V+KTPG SSI V+G+++EF+  
Sbjct: 456 LELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAG 515

Query: 568 DKSHPELEQIYD 579
           ++SHP+ EQI+ 
Sbjct: 516 EESHPDTEQIFQ 527



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 207/432 (47%), Gaps = 78/432 (18%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNV--QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           +R+   CA + S    Y  +I   V  Q P +F WN  ++   E     +A+ L+ + LR
Sbjct: 64  TRVGLVCAFTPS--FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYR-LR 120

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
                PD FT   + + C +L     G  + G V K+GF  ++Y+ N ++H++ SCG++G
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 132 LACNVFDESCVRNLVSWN-------------------------------SLINGFVRSGF 160
            A  +F++   R++V+WN                               S+I G+V+ G 
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            +EAI LF  M+   V+ +EVT++ +++ACA L  L+LG  IH Y +  G    V ++N 
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNT 300

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMYVKCG LE A ++F+ M  +TVVS + MI G A  G                    
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG-------------------- 340

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                      R++EAL LF +M   GI+P+ VT +  L ACS +G + +G    RF   
Sbjct: 341 -----------RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEG---RRFFAS 386

Query: 341 ENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGK-- 393
              +  ++        +VD+ ++ G + +A +    MP + N + + A++G   +H    
Sbjct: 387 MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVE 446

Query: 394 -ALDAISYFSEM 404
            A +AI +  E+
Sbjct: 447 MAEEAIKHLLEL 458


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/583 (34%), Positives = 332/583 (56%), Gaps = 37/583 (6%)

Query: 6   LISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           LI++ FA + + A   +    ++ + +D   K+   +   +  SWN  I GF + G  ++
Sbjct: 173 LITNSFA-ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A++L  +M ++ G RPD+ T   +    A +GL  +G  I G+ ++ GF   + +  A+ 
Sbjct: 232 ALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG +  A  +FD    + +VSWNS+++G+V++G P +AI +F  M  E ++P  V
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T++  + ACA L DL  G+ +H ++ +  L   + + N+L+ MY KC ++          
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRV---------- 400

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                DIA  IF++L  +  V WNA+I GY Q  R  EAL  F 
Sbjct: 401 ---------------------DIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFS 439

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM++ G+KPD+ T V  + A ++L       WIH  I +   + N+ + TALVDMY+KCG
Sbjct: 440 EMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCG 499

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            I  A ++F  + +R+ +T+ A+I G   HG    A+  F +M    + P++IT+L ++S
Sbjct: 500 AIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLVDEG ++F  M   + L P + HY  MVDLLGR+G ++EA   I +MP++  +
Sbjct: 560 ACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGI 619

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            V+GA   AC++H N+ +GE+AA KL EL+P + G +VLLAN+Y  ++ W +  +VRK M
Sbjct: 620 TVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E++G++KTPGCS +E+   ++ F     +HP+ ++IY  L +L
Sbjct: 680 EKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEEL 722



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 18/281 (6%)

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T ++  ++K+G ++ A ++F+ + +K    ++ ++ GY +    + ALA    M+   +K
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P      + L  C     L  G  IH  +   +F  NV   T +V+MYAKC  I  A ++
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  MPER+ +++  II G + +G A  A+     M   G  PD IT + +L A    GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 430 DEG--------RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
             G        R  FA++ +I          + + D+  + G +E A  +   M     V
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNI---------STALADMYSKCGSVETARLIFDGMDQKT-V 314

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           V W ++      +G          K+LE     +G+ ++ A
Sbjct: 315 VSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEA 355


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 319/575 (55%), Gaps = 45/575 (7%)

Query: 12  APSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           AP  + AF   S    ++    +   +Q+PN   +N  IR  ++  +  +A   +  M +
Sbjct: 58  APKLISAF---SLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQK 114

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
           NG    DNFTYP L K C   G       I  HV K GF  D++V N++I  +  CG LG
Sbjct: 115 NG-LFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLG 173

Query: 132 L--ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +  A  +F E   ++LVSWNS+I G V++G    A +LF +M     E D V+       
Sbjct: 174 VNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM----AERDAVS------- 222

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
                         W              N ++D YVK G++  A  +F+ M  + VVS 
Sbjct: 223 --------------W--------------NTILDGYVKAGEMSQAFNLFEKMPERNVVSW 254

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           +TM+ GY K G +++AR +FD +P K +V W  II G+ +   +KEA  L+++M+A G+K
Sbjct: 255 STMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLK 314

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD  T +  L+AC++ G L  G  +H  I+K     +V +  ALVDMYAKCG + KAL +
Sbjct: 315 PDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSI 374

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F+EM  R+ +++  ++ GLA+HG    AI  FS+M   G  PD++T + IL AC H G V
Sbjct: 375 FNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFV 434

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           D+G  YF  M     + P ++HY CM+DLLGR G LEEA +L++SMPM  + V+WG L  
Sbjct: 435 DQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLG 494

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+H  V + E+   +L+ L+  D G Y +L+N++  +  W     +R  M+  GV+K 
Sbjct: 495 ACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKP 554

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            G SSIE++  ++EF V DKSHPE ++IY  LV+L
Sbjct: 555 SGASSIELDDEVHEFTVFDKSHPETDKIYQILVKL 589



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 141/332 (42%), Gaps = 45/332 (13%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           D N  +E+H  I +  L   + +A  L+  +  C +                        
Sbjct: 35  DFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQ------------------------ 70

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                  +++A  +F+ + +  V  +N +I  +VQ  +S +A A F +MQ  G+  D  T
Sbjct: 71  -------MNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFT 123

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG--NIAKALQVFHE 372
               L AC+  G L     IH  +EK  F  ++ +  +L+D Y+KCG   +  A+++F E
Sbjct: 124 YPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFME 183

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M E++ +++ ++IGGL   G    A   F EM       D +++  IL      G + + 
Sbjct: 184 MGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAE----RDAVSWNTILDGYVKAGEMSQA 239

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF--FA 490
              F +M     +S     +S MV    ++G +E A  L   MP   ++V W  +   FA
Sbjct: 240 FNLFEKMPERNVVS-----WSTMVSGYCKTGDMEMARMLFDKMPF-KNLVTWTIIISGFA 293

Query: 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
            +     +      M+   L P D  +  +LA
Sbjct: 294 EKGLAKEATTLYNQMEAAGLKPDDGTLISILA 325


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/512 (39%), Positives = 305/512 (59%), Gaps = 8/512 (1%)

Query: 81  TYPLLFKVCASL-GLRFLGYEIFGHVLKLGFDVDMYVHNA--VIHVFVSCGDLGLACNVF 137
           T+  L + C SL  L+    +I G  + LG       H A  +++ +   G    A  VF
Sbjct: 5   TFYFLLQKCGSLEKLK----QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVF 60

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           +     ++VSW  LI+ ++ +  P +A  +F  +    + PD   ++G VSAC   +DL+
Sbjct: 61  NHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLS 120

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            GR +H  +    L     + NAL+DMY + G +E A  +F +M  K V S T+++ G+ 
Sbjct: 121 NGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFI 180

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK-PDAVTTV 316
           K   ++ AR+IFD++P +  V W A+I GYVQ +     L LF EM+A G   P  +T V
Sbjct: 181 KCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIV 240

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             LS C+ +GA D G  +H ++ K N +L+V +  AL+DMYAK G +  AL++F EMP+R
Sbjct: 241 AVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKR 300

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           +  ++T +I GLALHGK   A+  FS+M   G++P+E+T L +LSAC H GLV EGR  F
Sbjct: 301 DVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLF 360

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            +M     + PK++HY CMVDLLGR+GLL EA++LI  MP+  D V+W +L  AC +HGN
Sbjct: 361 QKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGN 420

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           +++ E A   ++EL+P D G+Y+LL N+Y  ++ WE+A K RK M +R V+K PGCS +E
Sbjct: 421 LALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVE 480

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           VNG+++EF+  D  H     +Y  L  +T   
Sbjct: 481 VNGVVHEFLAEDAVHCIRADVYTVLEAITEQM 512



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 188/415 (45%), Gaps = 68/415 (16%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+  ++QNP+  SW   I  +L T +  +A  ++  +  + G RPD+F        C   
Sbjct: 58  KVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHS-GLRPDSFCVVGAVSACGHR 116

Query: 93  GLRFLGYEIFGHVLK--LGFD-------VDMYVHNAVIHV-------------------- 123
                G  + G V +  LG D       +DMY  +  I V                    
Sbjct: 117 KDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLL 176

Query: 124 --FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDE 180
             F+ C D+  A  +FDE  +RN VSW ++I G+V+   P   + LF++M+ E  + P  
Sbjct: 177 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTV 236

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T++ ++S CA +   +LG  +H Y++++ L L V + NALMDMY K G L  A +IF  
Sbjct: 237 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 296

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V S TTMI G A  G                               +   AL  F
Sbjct: 297 MPKRDVFSWTTMISGLALHG-------------------------------KGTHALEAF 325

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAK 359
            +M  +G+ P+ VT +  LSACS  G + +G  +  + ++       +     +VD+  +
Sbjct: 326 SDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGR 385

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
            G + +A ++   MP + +S+ + +++    +HG    A++  +  + + L PD+
Sbjct: 386 AGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNL--ALAEMAGKMIIELEPDD 438



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 13/292 (4%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++   +I   +   NS SW   I G+++       ++L+++M   G   P   T   + 
Sbjct: 184 DIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVL 243

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA +G   LG  + G+V K   D+D+ V+NA++ ++   G L LA  +F E   R++ 
Sbjct: 244 SGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVF 303

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW ++I+G    G    A+  F DM    V P+EVT++ ++SAC+    +  GR +   +
Sbjct: 304 SWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKM 363

Query: 207 SE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--TVV--SCTTMIVGYAKFGF 261
            +  G+   +     ++D+  + G L  A+E+ + M  K  +V+  S  +  + +     
Sbjct: 364 VQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLAL 423

Query: 262 LDIARKIFDDL-PEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            ++A K+  +L P+    Y++ WN     Y  A R ++AL     M+   +K
Sbjct: 424 AEMAGKMIIELEPDDDGVYILLWNI----YCSASRWEDALKARKAMRDRRVK 471


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/432 (43%), Positives = 279/432 (64%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS +        P +AI LF  ++   V PD  T   ++ AC  L DL+ GR +H  + 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G    + L N ++ +Y  CG++  A  +F+ M  + VV+   MI    K G  + A  
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F  +PE+ V  W ++I GYVQ  ++KEA+ LF +M+  G+K + VT V  L+AC+ LGA
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           LD G+ IH +  +  F  NV +   L+DMY KCG + +A +VF EM ER  ++++A+IGG
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGG 335

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA+HG+A +A+  FS+M  VG+ P+ +TF+G+L AC H GL+ EGR++FA M+  + + P
Sbjct: 336 LAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIP 395

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           +++HY CMVDLL R+GLL EA + I +MPM  + VVWGAL  ACR+H NV + E A   L
Sbjct: 396 QIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           LELDP + G YV+L+N+Y ++  WE+  +VRK M++R V+KTPG SSI V+G+++EF+  
Sbjct: 456 LELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAG 515

Query: 568 DKSHPELEQIYD 579
           ++SHP+ EQI+ 
Sbjct: 516 EESHPDTEQIFQ 527



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 207/432 (47%), Gaps = 78/432 (18%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNV--QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           +R+   CA + S    Y  +I   V  Q P +F WN  ++   E     +A+ L+ + LR
Sbjct: 64  TRVGLVCAFTPS--FHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYR-LR 120

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
                PD FT   + + C +L     G  + G V K+GF  ++Y+ N ++H++ SCG++G
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 132 LACNVFDESCVRNLVSWN-------------------------------SLINGFVRSGF 160
            A  +F++   R++V+WN                               S+I G+V+ G 
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            +EAI LF  M+   V+ +EVT++ +++ACA L  L+LG  IH Y +  G    V ++N 
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNT 300

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMYVKCG LE A ++F+ M  +TVVS + MI G A  G                    
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG-------------------- 340

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                      R++EAL LF +M   GI+P+ VT +  L ACS +G + +G    RF   
Sbjct: 341 -----------RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEG---RRFFAS 386

Query: 341 ENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGK-- 393
              +  ++        +VD+ ++ G + +A +    MP + N + + A++G   +H    
Sbjct: 387 MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVE 446

Query: 394 -ALDAISYFSEM 404
            A +AI +  E+
Sbjct: 447 MAEEAIKHLLEL 458


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 328/578 (56%), Gaps = 47/578 (8%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
            AP +LI+  ++    NL    ++   VQ PN    N  IR      +  +A  ++ +M 
Sbjct: 53  IAP-KLISALSLCRQTNL--ALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQ 109

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           R  G   DNFTYP L K C+ L    +   +  H+ KLG   D+YV NA+I  +  CG L
Sbjct: 110 R-FGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGL 168

Query: 131 GL--ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           G+  A  +F++   R+ VSWNS++ G V++G  R+A +LF          DE+    ++S
Sbjct: 169 GVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLF----------DEMPQRDLIS 218

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
                          W              N ++D Y +C ++  A E+F+ M  +  VS
Sbjct: 219 ---------------W--------------NTMLDGYARCREMSRAFELFEKMPERNTVS 249

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            +TM++GY+K G +++AR +FD +P   K VV W  II GY +    KEA  L  +M A+
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVAS 309

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G++ DA   +  L+AC++ G L  G+  H  I+K N N N  +  AL+DMYAKCG++ KA
Sbjct: 310 GLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKA 369

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
             VF++MP+++ +++  ++ GL +HG   +AI  FS M   G+ PD++TF+ +L +C H 
Sbjct: 370 FDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHA 429

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GL+DEG  YF  M  ++ L PK++HY C+VDLLGR G L+EA +++++MPM  +VV+WGA
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGA 489

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H  V I +     L++LDP D G Y LL+N+Y  +  WE    +R  M+  GV
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGV 549

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           EK  G SS+E+   ++EF V DKSHP+ +QIY  L  L
Sbjct: 550 EKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 181/401 (45%), Gaps = 45/401 (11%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           ++   +++     D+++   +I     C    LA  VF++    N+   NSLI     + 
Sbjct: 37  QLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNS 96

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P +A  +F +MQ   +  D  T   ++ AC+ L  L + + +H +I + GL+  + + N
Sbjct: 97  QPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPN 156

Query: 220 ALMDMYVKCGKL--ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           AL+D Y +CG L    A ++F+ M  +  VS  +M+ G  K G L  ARK+FD++P++ +
Sbjct: 157 ALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDL 216

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + WN ++ GY + +    A  LF +M                                  
Sbjct: 217 ISWNTMLDGYARCREMSRAFELFEKMPER------------------------------- 245

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM--PERNSLTYTAIIGGLALHGKAL 395
                   N V  + +V  Y+K G++  A  +F +M  P +N +T+T II G A  G   
Sbjct: 246 --------NTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLK 297

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           +A     +M+  GL  D    + IL+AC   GL+  G +  + +     L+      + +
Sbjct: 298 EADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKK-SNLNSNASVLNAL 356

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           +D+  + G L++A  +   MP   D+V W  +     +HG+
Sbjct: 357 LDMYAKCGSLKKAFDVFNDMP-KKDLVSWNTMLHGLGVHGH 396



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 53/298 (17%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           +LN  +++H  I    L   + +A  L+     C +   A  +F+ +    V  C     
Sbjct: 31  NLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHLC----- 85

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                                     N++I  +    +  +A  +F EMQ  G+  D  T
Sbjct: 86  --------------------------NSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFT 119

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA--KALQVFHE 372
               L ACS L  L     +H  IEK   + ++ +  AL+D Y++CG +    A+++F +
Sbjct: 120 YPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEK 179

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M ER+++++ +++GGL   G+  DA   F EM       D I++  +L          +G
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARKLFDEMP----QRDLISWNTML----------DG 225

Query: 433 RKYFAQMSSIFRLSPKLKH-----YSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVW 484
                +MS  F L  K+       +S MV    ++G +E A  +   MP  A +VV W
Sbjct: 226 YARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTW 283



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 13/198 (6%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  C+ L  +     +H  I + N + ++ +   L+   + C     AL+VF+++ E N 
Sbjct: 26  LPKCANLNQVKQ---LHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
               ++I   AL+ +   A   FSEM   GL  D  T+  +L AC     +   +     
Sbjct: 83  HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNH 142

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLL--EEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           +  +  LS  +   + ++D   R G L   +A +L   M    D V W ++     L G 
Sbjct: 143 IEKL-GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSM-----LGGL 195

Query: 497 VSIGE-RAAMKLLELDPQ 513
           V  GE R A KL +  PQ
Sbjct: 196 VKAGELRDARKLFDEMPQ 213


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/453 (42%), Positives = 281/453 (62%), Gaps = 4/453 (0%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           VF +    N   W +LI G+   G   E++ L+  M+ + + P   T   ++ AC+   D
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 196 LNLGREIH-WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           +NLGR++H   I   G    + + N L+DMYVKCG L     +FD M+++ V+S T++IV
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            YAK G ++ A ++FD LP K +V W A++ GY Q  R +EAL +F  MQA G+K D VT
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENF--NLNVVLGTALVDMYAKCGNIAKALQVFHE 372
            V  +SAC+QLGA     W+    E+  F    NVV+G+AL+DMYAKCG++  A +VF  
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M ERN  +Y+++I G A+HG A  A+  F EM+   + P+ +TF+G+L+AC H G+V++G
Sbjct: 335 MEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG 394

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           ++ FA M     ++P   HY+CMVDLLGR+G LEEA  L++ MPM     VWGAL  ACR
Sbjct: 395 QQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACR 454

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           +HGN  + + AA  L EL+P   G Y+LL+N+Y  +  W++  KVRK+M  +G++K PGC
Sbjct: 455 IHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGC 514

Query: 553 SSIE-VNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           S +E   G+++EF   D SHP+  +I   L  L
Sbjct: 515 SWVEGKKGIIHEFFAGDMSHPKSREIKQALEDL 547



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 188/402 (46%), Gaps = 69/402 (17%)

Query: 28  LDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +D   +++F  V+ PN F W   IRG+   G   E+V LY  M R  G  P +FT+  L 
Sbjct: 88  MDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQ-GIGPVSFTFTALL 146

Query: 87  KVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
           K C++     LG ++    + + GF  D+YV N +I ++V CG LG    VFDE   R++
Sbjct: 147 KACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDV 206

Query: 146 VSWNSLI-------------------------------NGFVRSGFPREAIRLFRDMQLE 174
           +SW SLI                                G+ ++  PREA+ +F  MQ  
Sbjct: 207 ISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAA 266

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL--TLTVPLANALMDMYVKCGKLE 232
            V+ DEVT++G++SACAQL        +     +SG   T  V + +AL+DMY KCG +E
Sbjct: 267 GVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVE 326

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A ++F+ M  + V S ++MIVG+A  G    A ++FD                      
Sbjct: 327 DAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD---------------------- 364

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGT 351
                    EM  T IKP+ VT +  L+ACS  G ++ G  +   +E+      +     
Sbjct: 365 ---------EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYA 415

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            +VD+  + G + +AL +   MP   +   + A++G   +HG
Sbjct: 416 CMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHG 457



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A ++  N++  +++   +   +  +W   + G+ +  + REA++++++M +  G + D  
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERM-QAAGVKTDEV 273

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGF--DVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           T   +   CA LG       +     + GF    ++ V +A+I ++  CG +  A  VF+
Sbjct: 274 TLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
               RN+ S++S+I GF   G    A+ LF +M    ++P+ VT IG+++AC+    +  
Sbjct: 334 RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQ 393

Query: 199 GREIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           G+++   + E  G+  +      ++D+  + G+LE A  +   M
Sbjct: 394 GQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM 437


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/582 (35%), Positives = 327/582 (56%), Gaps = 35/582 (6%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +++ GF     I    +S   +  ++D   ++   +   +  ++NV + G+ ++G   +A
Sbjct: 184 VVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKA 243

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            +L+ +M +  G +P+  ++  +   C +      G  +    +  G   D+ V  ++I 
Sbjct: 244 FELFYRM-QQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIR 302

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++ +CG +  A  VFD   VR++VSW  +I G+  +G   +A  LF  MQ E ++PD +T
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRIT 362

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
            + +++ACA   +LN  REIH  +  +G    + ++ AL+ MY KCG ++ A        
Sbjct: 363 YMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDA-------- 414

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                                  R++FD +P + VV W+A+IG YV+     EA   FH 
Sbjct: 415 -----------------------RQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHL 451

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+ + I+PD VT ++ L+AC  LGALD G+ I+    K +   +V LG AL+ M AK G+
Sbjct: 452 MKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGS 511

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           + +A  +F  M  R+ +T+ A+IGG +LHG A +A+  F  M+     P+ +TF+G+LSA
Sbjct: 512 VERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSA 571

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C   G VDEGR++F  +     + P +K Y CMVDLLGR+G L+EAE LI+SMP+     
Sbjct: 572 CSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSS 631

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +W +L  ACR+HGN+ + ERAA + L +DP D  +YV L++MY  + MWE   KVRK+ME
Sbjct: 632 IWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVME 691

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            RG+ K  GC+ IEV G ++ F+V D+SHP + +IY  L +L
Sbjct: 692 SRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARL 733



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 235/470 (50%), Gaps = 34/470 (7%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N+    +I  +V+N    +WN  I G+ + G ++EA  L++QM+ + G  P   T+  + 
Sbjct: 107 NVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV-DEGLEPSIITFLSVL 165

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C+S      G E+   V+  GF  D  +  A++ ++V  G +  A  VFD   +R++ 
Sbjct: 166 DACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVS 225

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           ++N ++ G+ +SG   +A  LF  MQ   ++P++++ + ++  C   E L  G+ +H   
Sbjct: 226 TFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQC 285

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
             +GL   + +A +L+ MY  CG +E A                               R
Sbjct: 286 MNAGLVDDIRVATSLIRMYTTCGSIEGA-------------------------------R 314

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           ++FD++  + VV W  +I GY +    ++A  LF  MQ  GI+PD +T +H ++AC+   
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISA 374

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            L+    IH  ++   F  ++++ TALV MYAKCG I  A QVF  MP R+ ++++A+IG
Sbjct: 375 NLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIG 434

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
               +G   +A   F  M    + PD +T++ +L+AC H G +D G + + Q      L 
Sbjct: 435 AYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA-DLV 493

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             +   + ++ +  + G +E A  +  +M +  DV+ W A+     LHGN
Sbjct: 494 SHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGN 542



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 215/438 (49%), Gaps = 33/438 (7%)

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
           F  T   R   +   Q L  GG   D+ TY  LF+ C  L    LG ++  H+++ G  +
Sbjct: 31  FRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQL 90

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++Y  N +I ++  CG++  A  +FD    + +V+WN+LI G+ + G  +EA  LFR M 
Sbjct: 91  NIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV 150

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            E +EP  +T + ++ AC+    LN G+E+H  +  +G      +  AL+ MYVK G ++
Sbjct: 151 DEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMD 210

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A ++FD +  + V +   M+ GYAK G                   W            
Sbjct: 211 DARQVFDGLHIRDVSTFNVMVGGYAKSG------------------DW------------ 240

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            ++A  LF+ MQ  G+KP+ ++ +  L  C    AL  G  +H          ++ + T+
Sbjct: 241 -EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATS 299

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+ MY  CG+I  A +VF  M  R+ +++T +I G A +G   DA   F+ M   G+ PD
Sbjct: 300 LIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPD 359

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            IT++ I++AC     ++  R+  +Q+  I      L   + +V +  + G +++A Q+ 
Sbjct: 360 RITYMHIMNACAISANLNHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKDARQVF 418

Query: 473 RSMPMAADVVVWGALFFA 490
            +MP   DVV W A+  A
Sbjct: 419 DAMPR-RDVVSWSAMIGA 435


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/508 (42%), Positives = 297/508 (58%), Gaps = 47/508 (9%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GDL  A  +FD+    N   +NSLI G+  S  P +A+ LFR M    + P+E T+  ++
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221

Query: 188 SACA---------------------------------------------QLEDLNLGREI 202
            AC                                                +D+     +
Sbjct: 222 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 281

Query: 203 HW--YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            W   I  +G+ + + + NAL DMY KCG L SA+ IFD    K VVS T+MI  YA+ G
Sbjct: 282 SWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 341

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +++AR+IFD +P K VV WN++I  Y++  + +EAL LF++M+ + + PD  T V  L+
Sbjct: 342 SIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILA 401

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           ACSQLG L  G  IH +I        V L  +L+DMYAKCG +  AL +F EMP +N ++
Sbjct: 402 ACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVS 461

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +  IIG LALHG  L+AI  F EM   G +PDEIT  G+LSAC H GLVD G  YF +M 
Sbjct: 462 WNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMG 521

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            I+R+  +++HY+CMVDLLGR GLL EA +LI  MPM  DVVVWGAL  ACR+HGNV IG
Sbjct: 522 VIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIG 581

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ++   +LLEL+P   G+YVL++N+Y ++  WE+  K+RK+M +RG++K    SSIE++G 
Sbjct: 582 KQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGC 641

Query: 561 LYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +YEF+V DK H     IY  L QLT H 
Sbjct: 642 IYEFMVDDKRHKISSSIYAMLDQLTDHL 669


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/472 (41%), Positives = 283/472 (59%), Gaps = 6/472 (1%)

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD----LGLACNVFDESCVRNLVSWNSLING 154
           ++   H+LK G     +  + +I   VS       +  A ++F      N   WN++I  
Sbjct: 24  HQAHAHILKSGLIHSTFAASRLI-ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRA 82

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           +  S  P  A+ +F  M    V PD+ T    + +C     +  GR+IH ++ ++GL   
Sbjct: 83  YANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDD 142

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA-RKIFDDLP 273
           + + N L+ +Y  CG +E A  + D M+ + VVS   ++  YA+ G +++A R++F + P
Sbjct: 143 LFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETP 202

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            K VV WNA+I GY  A R  E L LF +MQ  G+KPD  T V  LSAC+ +GAL  G W
Sbjct: 203 VKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEW 262

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H +I+K   +++  + TALVDMY+KCG+I KAL+VF+    ++  T+ +II GL+ HG 
Sbjct: 263 VHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGS 322

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
              A+  FSEM+  G  P+E+TF+ +LSAC   GL+DEGR+ F  M  +  + P ++HY 
Sbjct: 323 GQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYG 382

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CMVDLLGR GLLEEAE+L++ MP     VVW +L  ACR HGNV + ER A KLLEL PQ
Sbjct: 383 CMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQ 442

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +S  +V L+NMY     W++  +VR+ M  +GV K PGCS IEV+G +YEF+
Sbjct: 443 ESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFL 494



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 212/433 (48%), Gaps = 83/433 (19%)

Query: 4   TGLISHGFAPSRLIAFCAI-SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +GLI   FA SRLIA  +  S ++ + Y   I   + NPNS+ WN  IR +  +     A
Sbjct: 33  SGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAA 92

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++ QML +    PD +T+    K C S      G +I GHVLK G   D+++ N +IH
Sbjct: 93  LTIFHQML-HASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIH 151

Query: 123 VFVSCG----------------------------DLGL----ACNVFDESCVRNLVSWNS 150
           ++ SCG                            + GL    +  VF E+ V+N+VSWN+
Sbjct: 152 LYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNA 211

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G+  +G   E + LF DMQ   V+PD  T++ ++SACA +  L+ G  +H YI ++G
Sbjct: 212 MITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNG 271

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +++   +A AL+DMY KCG +E A E+F+S + K + +  ++I G +  G          
Sbjct: 272 ISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHG---------- 321

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                                  + AL +F EM   G KP+ VT V  LSACS+ G LD+
Sbjct: 322 ---------------------SGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDE 360

Query: 331 GIWIHRFIEKENFNLNV-VLGTA--------LVDMYAKCGNIAKALQVFHEMPERN-SLT 380
           G        +E FNL V V G          +VD+  + G + +A ++  +MP++  S+ 
Sbjct: 361 G--------REMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVV 412

Query: 381 YTAIIGGLALHGK 393
           + +++G    HG 
Sbjct: 413 WESLLGACRNHGN 425



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 142/275 (51%), Gaps = 6/275 (2%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SWN  I G+   G+  E + L++ M ++ G +PDN T   +   CA +G    G  +
Sbjct: 205 NVVSWNAMITGYSHAGRFSEVLVLFEDM-QHAGVKPDNCTLVSVLSACAHVGALSQGEWV 263

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             ++ K G  +D +V  A++ ++  CG +  A  VF+    +++ +WNS+I+G    G  
Sbjct: 264 HAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSG 323

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANA 220
           + A+++F +M +E  +P+EVT + ++SAC++   L+ GRE+ +  +   G+  T+     
Sbjct: 324 QHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGC 383

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK-FGFLDIARKIFDDLPEKYVVP 279
           ++D+  + G LE AEE+   M  K        ++G  +  G +++A ++   L E     
Sbjct: 384 MVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQE 443

Query: 280 WNAII---GGYVQAKRSKEALALFHEMQATGIKPD 311
            ++ +     Y    R K+ + +  +M+A G++ D
Sbjct: 444 SSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD 478


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/496 (44%), Positives = 301/496 (60%), Gaps = 36/496 (7%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GDL  A  +FD+    N   +NSLI G+  S  P +A+ LFR M    + P+E T+  ++
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 188 SAC----AQLE---------DLNLG----------------------REIHWYISESGLT 212
            AC    A  E          L +G                      R++   I++  L 
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTL- 154

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           + + + NAL+DMY KCG L SA+ IFD    K VVS T+MI  YA+ G +++AR+IFD +
Sbjct: 155 IDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQM 214

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           P K VV WN++I  Y++  + +EAL LF++M+ + + PD  T V  L+ACSQLG L  G 
Sbjct: 215 PGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGK 274

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH +I        V L  +L+DMYAKCG +  AL +F EMP +N +++  IIG LALHG
Sbjct: 275 KIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHG 334

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
             L+AI  F EM   G +PDEIT  G+LSAC H GLVD G  YF +M  I+R+  +++HY
Sbjct: 335 CGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHY 394

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR GLL EA +LI  MPM  DVVVWGAL  ACR+HGNV IG++   +LLEL+P
Sbjct: 395 ACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEP 454

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
              G+YVL++N+Y ++  WE+  K+RK+M +RG++K    SSIE++G +YEF+V DK H 
Sbjct: 455 HSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHK 514

Query: 573 ELEQIYDCLVQLTRHF 588
               IY  L QLT H 
Sbjct: 515 ISSSIYAMLDQLTDHL 530



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 213/466 (45%), Gaps = 113/466 (24%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL +      +LI+FCA+ ++ +L Y  ++   +  PN F +N  IRG+  +    
Sbjct: 11  IILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPI 70

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG----------- 109
           +AV L+++M+ + G  P+ FT P + K C      +    + G  +KLG           
Sbjct: 71  DAVLLFRRMICS-GLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL 129

Query: 110 ----------------FD-------VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
                           FD       +D+ V NA++ ++  CG+L  A  +FD +  +N+V
Sbjct: 130 IAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVV 189

Query: 147 S-------------------------------WNSLINGFVRSGFPREAIRLFRDMQLER 175
           S                               WNS+I+ ++R G  REA+ LF  M+  R
Sbjct: 190 SWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR 249

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V PDE T++ +++AC+QL DL +G++IH YI  +     V L N+L+DMY KCG + +A 
Sbjct: 250 VVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTAL 309

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           +IF  M                               P K +V WN IIG         E
Sbjct: 310 DIFLEM-------------------------------PGKNLVSWNVIIGALALHGCGLE 338

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW-------IHRFI-EKENFNLNV 347
           A+ LF EMQA G  PD +T    LSACS  G +D G++       I+R   E E++    
Sbjct: 339 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHY---- 394

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHG 392
                +VD+  + G + +A+++   MP + + + + A++G   +HG
Sbjct: 395 ---ACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHG 437



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 24/324 (7%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A ++  +++   +I   +   N  SWN  I  +L  G+ REA+DL+ +M RN    PD  
Sbjct: 197 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM-RNSRVVPDEA 255

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVL--KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           T   +   C+ LG   +G +I  ++L  K  + V +Y  N++I ++  CG +  A ++F 
Sbjct: 256 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLY--NSLIDMYAKCGPVVTALDIFL 313

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           E   +NLVSWN +I      G   EAI+LF +MQ +   PDE+T+ G++SAC+    +++
Sbjct: 314 EMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDM 373

Query: 199 GREIHWYISESGLTLTVPLA----NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           G    +Y    G+   VP        ++D+  + G L  A E+   M  K  V     ++
Sbjct: 374 GL---YYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALL 430

Query: 255 GYAKF-GFLDIARKIFDDLPE-------KYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           G  +  G ++I ++I   L E        YV+  N     Y +A+R ++   +   M   
Sbjct: 431 GACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNI----YWEAQRWEDVKKIRKLMIDR 486

Query: 307 GIKPDAVTTVHCLSACSQLGALDD 330
           GIK     +   +  C     +DD
Sbjct: 487 GIKKGRAISSIEIDGCIYEFMVDD 510



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 68/332 (20%)

Query: 230 KLESAEEIFDSMVNKTVVSCTTM-IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           KL  A+ I   + N+T+     +        G L  A+++FD +P+     +N++I GY 
Sbjct: 5   KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR-----------F 337
            +    +A+ LF  M  +G+ P+  T    L AC    A  + + +H            F
Sbjct: 65  NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 338 IEKENFNLNVVLG-----------------------TALVDMYAKCGNIAKALQVFHEMP 374
           ++     + VV G                        ALVDMYAKCGN+  A  +F    
Sbjct: 125 VQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQ 184

Query: 375 ERNSLTYTAIIGGLALH-------------------------------GKALDAISYFSE 403
           E+N +++T++I   A H                               G+  +A+  F++
Sbjct: 185 EKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNK 244

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M    ++PDE T + IL+AC   G +  G+K    + S  + +  +  Y+ ++D+  + G
Sbjct: 245 MRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILS-NKGAYGVTLYNSLIDMYAKCG 303

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +  A  +   MP   ++V W  +  A  LHG
Sbjct: 304 PVVTALDIFLEMP-GKNLVSWNVIIGALALHG 334


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/513 (38%), Positives = 301/513 (58%), Gaps = 9/513 (1%)

Query: 77  PDNFTYPLLFKVCASLGLRFLG-YEIFGHVLKLGFDVDMYVHNAVIHVFV-SCGDLGL-- 132
           P  FT  L F    S     L  Y+I G +L    D D    N  +  F+ +C  LGL  
Sbjct: 18  PAIFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQD----NLFLSQFIDACTSLGLSS 73

Query: 133 -ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
            A ++F      +L  +N+ I    ++  P  AI L+  ++++ + PD  ++  ++ A  
Sbjct: 74  YAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVV 133

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
           +L  + +GR+IH     S L + V +A +L+ MY  CG +  A ++FD +  K V     
Sbjct: 134 KLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNA 193

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           M+ GY K G L  ARK+F+++P++ V+ W  +I GY Q  R  EA+ LF +MQ   ++PD
Sbjct: 194 MVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPD 253

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            +  +  LSAC+ LGAL+ G WIH +IEK      V L  AL+DMYAK GNI +AL+VF 
Sbjct: 254 EIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFE 313

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            M +++ +T++ +I  LALHG   +AI  F  M    + P+E+TF+ ILSAC H G+VD 
Sbjct: 314 NMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDV 373

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           GR YF QM S++++ PK++HY CM+DLL R+G L+EA++L+  MP  A+ ++WG+L  A 
Sbjct: 374 GRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAAS 433

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
             H +  + + A   L +L+P +SG YVLL+N Y     W E+G VRK+M   GV+K PG
Sbjct: 434 NTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPG 493

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            S IE+N ++YEF+  D S  ++ +IY  L ++
Sbjct: 494 GSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKI 526



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 200/428 (46%), Gaps = 74/428 (17%)

Query: 9   HGFAPSRLIAFCAISESKNLDYCTK---------ILFNVQNPNSFSWNVAIRGFLETGKM 59
           HGF   R +    +  S+ +D CT          I  N  +P+   +N AI+   +T   
Sbjct: 44  HGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSP 103

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ LY + +R  G RPD+++ P + K    L    +G +I    +    D+D+ V  +
Sbjct: 104 INAIWLYTR-IRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATS 162

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-------------------- 159
           +I ++ SCG +  A  +FD    +++  WN+++ G+V+ G                    
Sbjct: 163 LIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISW 222

Query: 160 -----------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                       P EAI LFR MQLE VEPDE+ M+ ++SACA L  L LG  IH YI +
Sbjct: 223 TTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEK 282

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            GL   V L NAL+DMY K G +  A E+F++M  K+V++ +T+I   A  G        
Sbjct: 283 HGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHG-------- 334

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                          +GG        EA+ +F  M+   ++P+ VT V  LSACS +G +
Sbjct: 335 ---------------LGG--------EAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMV 371

Query: 329 DDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           D G  +  +          +     ++D+ A+ G + +A ++ H+MP E N++ + +++ 
Sbjct: 372 DVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLA 431

Query: 387 GLALHGKA 394
               H  A
Sbjct: 432 ASNTHRDA 439


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/584 (37%), Positives = 322/584 (55%), Gaps = 49/584 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG-------L 94
           N+FS+N  +  +   G+  EA  L++ +       PD  +Y  +    A  G       L
Sbjct: 82  NTFSYNALLSAYARLGRPDEARALFEAI-----PDPDQCSYNAVVAALARHGRGHAGDAL 136

Query: 95  RFL------------------------------GYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           RFL                              G ++ G V +     D+++  A++ ++
Sbjct: 137 RFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMY 196

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             C     A  VFD    RN+VSWNSLI  + ++G   EA+ LF +M      PDEVT+ 
Sbjct: 197 AKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLS 256

Query: 185 GMVSACAQLEDLNLGREIHWY-ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
            ++SACA L     GR++H + +    L   + L NAL+DMY KCG+   A  IFDSM +
Sbjct: 257 SVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPS 316

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           ++VVS T+++ GYAK   ++ A+ +F  + EK V+ WN +I  Y Q    +EA+ LF ++
Sbjct: 317 RSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL 376

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN------VVLGTALVDMY 357
           +   I P   T  + L+AC  +  L  G   H  + KE F  +      V +G +LVDMY
Sbjct: 377 KRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 436

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
            K G+I    +VF  M  R+++++ A+I G A +G+A DA+  F  M+     PD +T +
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 496

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+LSAC H GLVDEGR++F  M+    ++P   HY+CMVDLLGR+G L+EAE+LI+ MP 
Sbjct: 497 GVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT 556

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             D V+W +L  ACRLH NV +GER A +L ELDP++SG YVLL+NMY +   W +  +V
Sbjct: 557 EPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRV 616

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           R+ M++RGV K PGCS IE+   +  F+ RD  HP   +I+  L
Sbjct: 617 RRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTL 660



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 179/408 (43%), Gaps = 82/408 (20%)

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           G VLK     + ++ N ++  +   G L  A  VFD   +RN  S+N+L++ + R G P 
Sbjct: 41  GCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPD 100

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMV----------------------------------- 187
           EA  LF  +     +PD+ +   +V                                   
Sbjct: 101 EARALFEAIP----DPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFAS 156

Query: 188 --SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
             SACA  +DL  G ++H  ++ S     V +  AL+DMY KC +   A  +FD+M  + 
Sbjct: 157 ALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERN 216

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VVS                               WN++I  Y Q     EAL LF EM A
Sbjct: 217 VVS-------------------------------WNSLITCYEQNGPVGEALVLFVEMMA 245

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYAKCGNIA 364
           TG  PD VT    +SAC+ L A  +G  +H   ++++    ++VL  ALVDMYAKCG   
Sbjct: 246 TGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTW 305

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           +A  +F  MP R+ ++ T+I+ G A      DA   FS+M+   +    I +  +++A  
Sbjct: 306 EARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYA 361

Query: 425 HGGLVDEGRKYFAQMS--SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
             G  +E  + F Q+   SI+   P    Y  +++  G   +L+  +Q
Sbjct: 362 QNGEEEEAIRLFVQLKRDSIW---PTHYTYGNVLNACGNIAVLQLGQQ 406



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 2/280 (0%)

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
            R  H  + +S +     L N L+  Y + G+L  A  +FD +  +   S   ++  YA+
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR--SKEALALFHEMQATGIKPDAVTTV 316
            G  D AR +F+ +P+     +NA++    +  R  + +AL     M A     +A +  
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             LSAC+    L  G  +H  + +     +V +GTALVDMYAKC     A +VF  MPER
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPER 215

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N +++ ++I     +G   +A+  F EM+  G  PDE+T   ++SAC       EGR+  
Sbjct: 216 NVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVH 275

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           A M    RL   +   + +VD+  + G   EA  +  SMP
Sbjct: 276 AHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 13/241 (5%)

Query: 13  PSRLIA-----FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           PSR +          ++S N++    +   +   N  +WNV I  + + G+  EA+ L+ 
Sbjct: 315 PSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFV 374

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF------DVDMYVHNAVI 121
           Q+ R+    P ++TY  +   C ++ +  LG +   HVLK GF      + D++V N+++
Sbjct: 375 QLKRD-SIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 433

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            +++  G +     VF+    R+ VSWN++I G+ ++G  ++A+ LF  M      PD V
Sbjct: 434 DMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSV 493

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           TMIG++SAC     ++ GR   H+   + G+T +      ++D+  + G L+ AEE+   
Sbjct: 494 TMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKD 553

Query: 241 M 241
           M
Sbjct: 554 M 554


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 314/543 (57%), Gaps = 33/543 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I  + ++G  +EA++ Y  ++R  G  P++ T       CA L     G EI   +
Sbjct: 175 WNTVISCYYQSGNFKEALE-YFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEEL 233

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +  GF +D ++ +A++ ++  CG L +A  VF++   + +V+WNS+I+G+   G     I
Sbjct: 234 INSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCI 293

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
           +LF+ M  E V+P   T+  ++  C++   L  G+ +H Y   + +   V + ++LMD+Y
Sbjct: 294 QLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLY 353

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KCGK+E AE                                IF  +P+  VV WN +I 
Sbjct: 354 FKCGKVELAE-------------------------------NIFKLIPKSKVVSWNVMIS 382

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GYV   +  EAL LF EM+ + ++PDA+T    L+ACSQL AL+ G  IH  I ++  + 
Sbjct: 383 GYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDN 442

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           N V+  AL+DMYAKCG + +A  VF  +P+R+ +++T++I     HG+A  A+  F+EM+
Sbjct: 443 NEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEML 502

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
              + PD +TFL ILSAC H GLVDEG  YF QM +++ + P+++HYSC++DLLGR+G L
Sbjct: 503 QSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRL 562

Query: 466 EEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
            EA ++++  P +  DV +   LF ACRLH N+ +G   A  L++ DP DS  Y+LL+NM
Sbjct: 563 HEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNM 622

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           Y  ++ W+E   VR  M+E G++K PGCS IE+N  +  F V D SH  LE ++ CL  L
Sbjct: 623 YASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYL 682

Query: 585 TRH 587
           + H
Sbjct: 683 SDH 685



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 242/486 (49%), Gaps = 42/486 (8%)

Query: 29  DYCTKILFNVQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           D+   +  N++NP   S WN  + G+ +     EA++L++++L     +PD++TYP + K
Sbjct: 55  DHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLK 114

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C  L    LG  I   ++K G  +D+ V ++++ ++  C     A  +F+E   +++  
Sbjct: 115 ACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVAC 174

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+ + +SG  +EA+  F  M+    EP+ VT+   +S+CA+L DLN G EIH  + 
Sbjct: 175 WNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELI 234

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
            SG  L   +++AL+DMY KCG LE A E+F+ M  KTVV+                   
Sbjct: 235 NSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVA------------------- 275

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WN++I GY     S   + LF  M   G+KP   T    +  CS+   
Sbjct: 276 ------------WNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSAR 323

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L +G ++H +  +     +V + ++L+D+Y KCG +  A  +F  +P+   +++  +I G
Sbjct: 324 LLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISG 383

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
               GK  +A+  FSEM    + PD ITF  +L+AC     +++G +    +     +  
Sbjct: 384 YVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLI-----IEK 438

Query: 448 KLKH----YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           KL +       ++D+  + G ++EA  + + +P   D+V W ++  A   HG   +    
Sbjct: 439 KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQAYVALEL 497

Query: 504 AMKLLE 509
             ++L+
Sbjct: 498 FAEMLQ 503



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 196/409 (47%), Gaps = 40/409 (9%)

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD---E 139
           PLL     S  L+  G  I   V+ LG   D+++   +I++++SC     A  VFD    
Sbjct: 8   PLLRACMNSKSLK-QGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMEN 66

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNL 198
            C  +L  WN L+ G+ ++    EA+ LF   +    ++PD  T   ++ AC  L    L
Sbjct: 67  PCEISL--WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVL 124

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+ IH  + ++GL + + + ++L+ MY KC   E A  +F+ M                 
Sbjct: 125 GKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEM----------------- 167

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
                         PEK V  WN +I  Y Q+   KEAL  F  M+  G +P++VT    
Sbjct: 168 --------------PEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTA 213

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           +S+C++L  L+ G+ IH  +    F L+  + +ALVDMY KCG++  A++VF +MP++  
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTV 273

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + + ++I G  L G ++  I  F  M   G+ P   T   ++  C     + EG K+   
Sbjct: 274 VAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHG 332

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +   R+   +   S ++DL  + G +E AE + + +P  + VV W  +
Sbjct: 333 YTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIP-KSKVVSWNVM 380



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 176/374 (47%), Gaps = 36/374 (9%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI+ GF     I+   +    +  +L+   ++   +      +WN  I G+   G     
Sbjct: 233 LINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISC 292

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + L+K+M  N G +P   T   L  VC+       G  + G+ ++     D++++++++ 
Sbjct: 293 IQLFKRMY-NEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMD 351

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG + LA N+F       +VSWN +I+G+V  G   EA+ LF +M+   VEPD +T
Sbjct: 352 LYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAIT 411

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
              +++AC+QL  L  G EIH  I E  L     +  AL+DMY KCG ++ A  +F  + 
Sbjct: 412 FTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP 471

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            + +VS T+MI  Y   G             + YV                  AL LF E
Sbjct: 472 KRDLVSWTSMITAYGSHG-------------QAYV------------------ALELFAE 500

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           M  + +KPD VT +  LSAC   G +D+G  + ++ +        V   + L+D+  + G
Sbjct: 501 MLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAG 560

Query: 362 NIAKALQVFHEMPE 375
            + +A ++  + PE
Sbjct: 561 RLHEAYEILQQNPE 574


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/461 (41%), Positives = 287/461 (62%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GD+  A  +F     R    WN+++  F     P   + L++ M      P+  T   ++
Sbjct: 36  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 95

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            ACAQL DL+ G  +H      G      + N L+ +Y  C  ++SA  +FD  VN+ VV
Sbjct: 96  QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 155

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           + T +I GYAK G + +AR++FD++PEK  V W+A+I GY Q    +EAL LF++MQ  G
Sbjct: 156 TWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAG 215

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P+    V  L+AC+ LGALD G WIH ++++    L+ +LGTAL+DMYAKCG +  A 
Sbjct: 216 FRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETAC 275

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF EM +R+   +T++I GLA HG +  AI  F+ M   G+ P+E+TF+ +LSAC   G
Sbjct: 276 RVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVG 335

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LV+EG + F  M++I+ + P ++HY C+VDLLGR+G+LE+A++++R MP+  D  V GAL
Sbjct: 336 LVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGAL 395

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR+HG+V +G+     L E      G++VLL+NMY  +N WE+  KVRK MEE+ V+
Sbjct: 396 LNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVK 455

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           K PGCS IEV+G ++EF+  D SH  +++I   L+ + +H 
Sbjct: 456 KVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHL 496



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 208/426 (48%), Gaps = 67/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +T++G +   FA  R+I+FCA+S   ++ +   +  ++    SF WN  +R F +  +  
Sbjct: 11  LTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPA 70

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             + LYK ML  G   P+N+T+  L + CA L     G  +    ++LG++   +V N +
Sbjct: 71  TVLSLYKYMLSTG-FLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGL 129

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-----------FP-------- 161
           +H++ SC  +  A  +FD S  R++V+W ++ING+ +SG            P        
Sbjct: 130 LHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWS 189

Query: 162 ------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                       REA+ LF DMQ+    P+   ++G ++ACA L  L+ GR IH Y+  +
Sbjct: 190 AMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRN 249

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            + L   L  AL+DMY KCG +E+A  +FD M+++ V + T++I G A  G         
Sbjct: 250 RMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG--------- 300

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  S  A+ +F  MQ  G+ P+ VT +  LSACS++G ++
Sbjct: 301 ----------------------HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVE 338

Query: 330 DGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           +G+ I + +    + +  V+     LVD+  + G +  A +V  EMP E +S    A++ 
Sbjct: 339 EGLRIFKSM-TNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLN 397

Query: 387 GLALHG 392
              +HG
Sbjct: 398 ACRVHG 403


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/537 (36%), Positives = 308/537 (57%), Gaps = 33/537 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  S N  + GF +T    +   +  Q+L  G   P+ +T+  + K CAS G    G  I
Sbjct: 155 NLASRNNLLSGFCDTETCDQGPRILIQLLVEG-FEPNMYTFISILKTCASKGDLNEGKAI 213

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G V+K G + D ++ N++++V+  CG    AC VF E   R++VSW +LI GFV  G+ 
Sbjct: 214 HGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG 273

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
              +R+F  M  E   P+  T I ++ +C+ L D++LG+++H  I ++ L     +  AL
Sbjct: 274 -SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTAL 332

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY                               AK  FL+ A  IF+ L ++ +  W 
Sbjct: 333 VDMY-------------------------------AKNRFLEDAETIFNRLIKRDLFAWT 361

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            I+ GY Q  + ++A+  F +MQ  G+KP+  T    LS CS++  LD G  +H    K 
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 421

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             + ++ + +ALVDMYAKCG +  A  VF  +  R+++++  II G + HG+   A+  F
Sbjct: 422 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAF 481

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M+  G +PDE+TF+G+LSAC H GL++EG+K+F  +S I+ ++P ++HY+CMVD+LGR
Sbjct: 482 EAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGR 541

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G   E E  I  M + ++V++W  +  AC++HGN+  GERAAMKL EL+P+    Y+LL
Sbjct: 542 AGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILL 601

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +NM+    MW++   VR +M  RGV+K PGCS +EVNG ++ F+  D SHP++ +I+
Sbjct: 602 SNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIH 658



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 208/451 (46%), Gaps = 35/451 (7%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  +        ++EAV L+  ++R+   R + F +  L    ASLG    G  I   V
Sbjct: 58  WNQKLSSANSPYPLQEAVQLF-YLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACV 116

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            K GF+ D+ + NA + +++    +      F    + NL S N+L++GF  +    +  
Sbjct: 117 CKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGP 176

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
           R+   + +E  EP+  T I ++  CA   DLN G+ IH  + +SG+     L N+L+++Y
Sbjct: 177 RILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVY 236

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KCG    A ++F  +  + VVS T +I G+   G+                        
Sbjct: 237 AKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY------------------------ 272

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                      L +F++M A G  P+  T +  L +CS L  +D G  +H  I K + + 
Sbjct: 273 --------GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 324

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           N  +GTALVDMYAK   +  A  +F+ + +R+   +T I+ G A  G+   A+  F +M 
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ P+E T    LS C     +D GR+  + M+     S  +   S +VD+  + G +
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHS-MAIKAGQSGDMFVASALVDMYAKCGCV 443

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           E+AE +   + ++ D V W  +      HG 
Sbjct: 444 EDAEVVFDGL-VSRDTVSWNTIICGYSQHGQ 473



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 181/374 (48%), Gaps = 51/374 (13%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           +Y  K+   +   +  SW   I GF+  G     + ++ QML  G   P+ +T+  + + 
Sbjct: 243 NYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEG-FNPNMYTFISILRS 300

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           C+SL    LG ++   ++K   D + +V  A++ ++     L  A  +F+    R+L +W
Sbjct: 301 CSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAW 360

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
             ++ G+ + G   +A++ F  MQ E V+P+E T+   +S C+++  L+ GR++H    +
Sbjct: 361 TVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK 420

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +G +  + +A+AL+DMY KCG +E AE +FD +V++  VS  T+I GY++ G        
Sbjct: 421 AGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG-------- 472

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  +  +AL  F  M   G  PD VT +  LSACS +G +
Sbjct: 473 -----------------------QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 509

Query: 329 DDGIWIHRFIEKENFN-LNVVLG-TALVDMYAKCGNIAKALQVFHEMPE--------RNS 378
           ++G        K++FN L+ + G T  ++ YA   +I      FHE+           N 
Sbjct: 510 EEG--------KKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 561

Query: 379 LTYTAIIGGLALHG 392
           L +  ++G   +HG
Sbjct: 562 LIWETVLGACKMHG 575



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 2/238 (0%)

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           ++++  Y K   L  AR++ +++P + V  WN  +         +EA+ LF+ M+ T I+
Sbjct: 28  SSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIR 87

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            +       +SA + LG    G  IH  + K  F  ++++  A V MY K  ++    Q 
Sbjct: 88  LNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQF 147

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  M   N  +   ++ G               +++  G  P+  TF+ IL  C   G +
Sbjct: 148 FKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDL 207

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +EG+    Q+     ++P    ++ +V++  + G    A ++   +P   DVV W AL
Sbjct: 208 NEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-ERDVVSWTAL 263


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/461 (41%), Positives = 287/461 (62%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GD+  A  +F     R    WN+++  F     P   + L++ M      P+  T   ++
Sbjct: 61  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 120

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            ACAQL DL+ G  +H      G      + N L+ +Y  C  ++SA  +FD  VN+ VV
Sbjct: 121 QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 180

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           + T +I GYAK G + +AR++FD++PEK  V W+A+I GY Q    +EAL LF++MQ  G
Sbjct: 181 TWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAG 240

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P+    V  L+AC+ LGALD G WIH ++++    L+ +LGTAL+DMYAKCG +  A 
Sbjct: 241 FRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETAC 300

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF EM +R+   +T++I GLA HG +  AI  F+ M   G+ P+E+TF+ +LSAC   G
Sbjct: 301 RVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVG 360

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LV+EG + F  M++I+ + P ++HY C+VDLLGR+G+LE+A++++R MP+  D  V GAL
Sbjct: 361 LVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGAL 420

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR+HG+V +G+     L E      G++VLL+NMY  +N WE+  KVRK MEE+ V+
Sbjct: 421 LNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVK 480

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           K PGCS IEV+G ++EF+  D SH  +++I   L+ + +H 
Sbjct: 481 KVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHL 521



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 208/426 (48%), Gaps = 67/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +T++G +   FA  R+I+FCA+S   ++ +   +  ++    SF WN  +R F +  +  
Sbjct: 36  LTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPA 95

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             + LYK ML  G   P+N+T+  L + CA L     G  +    ++LG++   +V N +
Sbjct: 96  TVLSLYKYMLSTG-FLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGL 154

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-----------FP-------- 161
           +H++ SC  +  A  +FD S  R++V+W ++ING+ +SG            P        
Sbjct: 155 LHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWS 214

Query: 162 ------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                       REA+ LF DMQ+    P+   ++G ++ACA L  L+ GR IH Y+  +
Sbjct: 215 AMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRN 274

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            + L   L  AL+DMY KCG +E+A  +FD M+++ V + T++I G A  G         
Sbjct: 275 RMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG--------- 325

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  S  A+ +F  MQ  G+ P+ VT +  LSACS++G ++
Sbjct: 326 ----------------------HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVE 363

Query: 330 DGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           +G+ I + +    + +  V+     LVD+  + G +  A +V  EMP E +S    A++ 
Sbjct: 364 EGLRIFKSM-TNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLN 422

Query: 387 GLALHG 392
              +HG
Sbjct: 423 ACRVHG 428


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/579 (35%), Positives = 325/579 (56%), Gaps = 44/579 (7%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F   +LIA  A S  + +     +   +Q+P+   +N  IR  +   +   A  ++ +M 
Sbjct: 50  FVGQKLIA--AFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEM- 106

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           ++ G   DNFTYP L K C+      +   I   V K+GF +D++V N++I  +  CG  
Sbjct: 107 QDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLD 166

Query: 131 GLAC--NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           G+A    VF+    R+ VSWNS+I G V+ G   EA RLF +M      P+  T      
Sbjct: 167 GVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEM------PERDT------ 214

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
                        + W              N ++D YVK G++ +A E+F+ M  + VVS
Sbjct: 215 -------------VSW--------------NTILDGYVKAGEMNAAFELFEKMPARNVVS 247

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            +TM++GY+K G +D+AR +FD +P K +VPW  +I GY +   +K+A+ L+++M+  G+
Sbjct: 248 WSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGL 307

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           K D  T +  LSAC+  G L  G  +H  IE+  F  +  +  AL+DMYAKCG++  AL 
Sbjct: 308 KFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALS 367

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           +FH M  ++ +++ AII GLA+HG    A+  FS M G G +PD++TF+G+L AC H G 
Sbjct: 368 IFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGF 427

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           VDEG  YF  M   + + P+++HY CMVDLLGR G L+EA +L+ SMP+  + ++WG L 
Sbjct: 428 VDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLL 487

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
            ACR+H    + E    +L++ +  DSG   +L+N+Y  +  W+    +R  M+   ++K
Sbjct: 488 GACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQK 547

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
             G SSIEV+  ++EF V D+SHP+ ++IY  +  L +H
Sbjct: 548 PSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGLGQH 586



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 197/407 (48%), Gaps = 48/407 (11%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   VLK     + +V   +I  F  C  + LA NVF++    +++ +N+LI   VR+ 
Sbjct: 35  QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P  A  +F +MQ   V  D  T   ++ AC+    + +   IH  + + G  L + + N
Sbjct: 95  EPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPN 154

Query: 220 ALMDMYVKCG--KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           +L+D Y KCG   + +A ++F+ M  +  VS  +MI G  K G L  AR++FD++PE+  
Sbjct: 155 SLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDT 214

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WN I+ GYV+A     A  LF +M A                                
Sbjct: 215 VSWNTILDGYVKAGEMNAAFELFEKMPAR------------------------------- 243

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
                   NVV  + +V  Y+K G++  A  +F +MP +N + +T +I G A  G A DA
Sbjct: 244 --------NVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDA 295

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMV 456
           I+ +++M   GL  D+ T + ILSAC   GL+  G++  A +    F+ S  + +   ++
Sbjct: 296 INLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSN--ALI 353

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           D+  + G LE A  +   M +  DVV W A+     +HG+   GE+A
Sbjct: 354 DMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGH---GEKA 396



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 87/232 (37%), Gaps = 52/232 (22%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  CS L  +     IH  + K N +    +G  L+  ++ C  +  A+ VF+++ + + 
Sbjct: 24  LHRCSSLNQVKQ---IHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC--------------- 423
           L Y  +I     + + L A S F EM   G+  D  T+  +L AC               
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140

Query: 424 ----------------------CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
                                 C    V   RK F  M+    +S     ++ M+  L +
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVS-----WNSMIGGLVK 195

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE-RAAMKLLELDP 512
            G L EA +L   MP   D V W  +     L G V  GE  AA +L E  P
Sbjct: 196 VGELGEARRLFDEMP-ERDTVSWNTI-----LDGYVKAGEMNAAFELFEKMP 241


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/529 (37%), Positives = 309/529 (58%), Gaps = 34/529 (6%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC--GDLGLACNVFDESCV 142
           LF   +   L++L  ++ G VL+ G   D YV  A++  + +    +   A  VF     
Sbjct: 37  LFDSKSITSLQYL-TQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPN 95

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            N+  WN +I G + +    +AI  +  M ++   P++ T   +  AC+  + +  GR+I
Sbjct: 96  PNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQI 154

Query: 203 HWYISESGLTLTVPLA------------------------------NALMDMYVKCGKLE 232
           H ++ + G+   V +                               N ++D Y+KCG LE
Sbjct: 155 HGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLE 214

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A+ +F  M  K + S   MI G AK G L  ARK+FD++ E+  + W++++ GY+ A R
Sbjct: 215 AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGR 274

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            KEAL +F +MQ    +P        L+ACS +GA+D G W+H ++++ +  L+ VLGTA
Sbjct: 275 YKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA 334

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMYAKCG +    +VF EM ER   T+ A+IGGLA+HG+A DA+  FS++    + P+
Sbjct: 335 LLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPN 394

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            IT +G+L+AC H G VD+G + F  M   + + P+L+HY CMVDLLGRSGL  EAE LI
Sbjct: 395 GITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLI 454

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
            SMPM  +  VWGAL  ACR+HGN  + ER    LLEL+PQ+SG YVLL+N+Y     ++
Sbjct: 455 NSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFD 514

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +  K+RK+M++RG++  PG S +++NG ++EF + D SHP++++IY  L
Sbjct: 515 DVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKL 563



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 202/430 (46%), Gaps = 98/430 (22%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N D+  K+  ++ NPN F WN+ I+G LE  K+ +A+  Y +M+ +   RP+ FTYP LF
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID--ARPNKFTYPTLF 139

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS-------------------- 126
           K C+       G +I GHV+K G   D+++ +A IH++ S                    
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVC 199

Query: 127 ----------CGDLGLACNVFDESCVRNL------------------------------- 145
                     CG L  A  +F +  V+N+                               
Sbjct: 200 WNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDE 259

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           +SW+S+++G++ +G  +EA+ +F+ MQ E   P    +  +++AC+ +  ++ GR +H Y
Sbjct: 260 ISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           +  + + L   L  AL+DMY KCG+L+   E+F+ M  + + +   MI G A  G     
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHG----- 374

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                     R+++AL LF ++Q   +KP+ +T V  L+AC+  
Sbjct: 375 --------------------------RAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408

Query: 326 GALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMPER-NSLTYT 382
           G +D G+ I + + +E + ++  L     +VD+  + G  ++A  + + MP + N+  + 
Sbjct: 409 GFVDKGLRIFQTM-REFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWG 467

Query: 383 AIIGGLALHG 392
           A++G   +HG
Sbjct: 468 ALLGACRIHG 477



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 144/298 (48%), Gaps = 14/298 (4%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
            +++  NL    K+   +   +  SW+  + G++  G+ +EA+++++QM R   TRP  F
Sbjct: 237 GLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE-TRPGRF 295

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
               +   C+++G    G  +  ++ +    +D  +  A++ ++  CG L +   VF+E 
Sbjct: 296 ILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM 355

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R + +WN++I G    G   +A+ LF  +Q  R++P+ +T++G+++ACA    ++ G 
Sbjct: 356 KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGL 415

Query: 201 EIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            I   + E  G+   +     ++D+  + G    AE++ +SM  K   +    ++G  + 
Sbjct: 416 RIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRI 475

Query: 260 -GFLDIARKIFDDLPE-------KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            G  D+A ++   L E       +YV+  N     Y +  R  +   +   M+  GIK
Sbjct: 476 HGNFDLAERVGKILLELEPQNSGRYVLLSNI----YAKVGRFDDVSKIRKLMKDRGIK 529


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 317/548 (57%), Gaps = 33/548 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NSF WN  IRG+   G   +++ LY++ML   G R DNFTYP + K C  L L  +G  +
Sbjct: 125 NSFLWNFMIRGYASNGLPMKSLVLYREML-CFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+  G + D+YV N+++ ++   GD+G A  VFD    R+L SWN++I+G+ ++   
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLTVPLANA 220
             A  +F  M    +  D  T++G++SACA L+ +  G+ IH Y   + +        N+
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L++MY  C          + MV+                     AR++F+ +  K  V W
Sbjct: 304 LIEMYCNC----------NCMVD---------------------ARRLFERVRWKDTVSW 332

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N++I GY +   + E+L LF  M   G  PD VT +  L AC Q+ AL  G+ IH ++ K
Sbjct: 333 NSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVK 392

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           + F+ N ++GTALVDMY+KCG++A + +VF EMP+++ ++++A++ G  LHG+  +AIS 
Sbjct: 393 KGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISI 452

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
              M    ++PD   F  ILSAC H GLV EG++ F +M   + + P L HYSCMVDLLG
Sbjct: 453 LDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLG 512

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L+EA  +IR+M +     +W AL  A RLH N+ + E +A K+ +++P+    Y+ 
Sbjct: 513 RAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYIC 572

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N+Y     W++  +VR M+  +G++K+PGCS IE++ +++ F+V DKSH + E IY  
Sbjct: 573 LSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAK 632

Query: 581 LVQLTRHF 588
           L +L +  
Sbjct: 633 LNELKQQL 640



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 5/226 (2%)

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT-----MIVGYAKFGFLDIARK 267
           LT     AL+  +      +  +++   M++ +++   T     +   YA  G +  A  
Sbjct: 57  LTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEV 116

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           IFD +  K    WN +I GY       ++L L+ EM   G + D  T    L AC  L  
Sbjct: 117 IFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLL 176

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           ++ G  +H  +       ++ +G +L+ MYAK G++  A  VF  M ER+  ++  +I G
Sbjct: 177 VEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISG 236

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            A +  +  A   F  M   GL  D  T LG+LSAC     V EG+
Sbjct: 237 YAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK 282


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/489 (38%), Positives = 303/489 (61%), Gaps = 6/489 (1%)

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVS-CGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           ++I+ H++K G  ++       +    S  G++  A  +F      NL SWN++I  F R
Sbjct: 45  HQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSR 104

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S  P+ AI LF DM   +++P  +T   +  A AQL   + G ++H  + + GL     +
Sbjct: 105 SSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFI 164

Query: 218 ANALMDMYVKCGKLESAEEIFD----SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            N ++ MY   G +  A  +FD     + +  VV+  +MI+GYAK G +D +R +FDD+ 
Sbjct: 165 CNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMI 224

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            +  V WN++I GYV+  +  EAL LF++MQ  G +    T V  L+AC+ LGAL  G W
Sbjct: 225 TRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKW 284

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H +I++ +F LNV++ TA++DMY KCG++  A++VF   P R    + +II GLA++G 
Sbjct: 285 VHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGH 344

Query: 394 ALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
             +A  +FS++    L+ PD ++F+G+L+AC H G +++ R YF  M + + + P +KHY
Sbjct: 345 EREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHY 404

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +C+VD+LG++GLLEEAE+LI+ MP+  D ++WG+L  +CR H NV I  RAA ++ EL+P
Sbjct: 405 TCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNP 464

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
            D+  YVL++N++  SN +EEA + R +M+E   EK PGCSSIE+ G ++EFI   + HP
Sbjct: 465 SDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFIAGGRLHP 524

Query: 573 ELEQIYDCL 581
           + ++IY  L
Sbjct: 525 KTQEIYHLL 533



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 146/540 (27%), Positives = 238/540 (44%), Gaps = 119/540 (22%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL  +  A +R + FCA S S N++Y  K+   + NPN +SWN  IR F  +   + A+
Sbjct: 54  TGLTLNPIASTRALTFCA-SPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAI 112

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  ML +   +P   TYP +FK  A LG    G ++ G V+KLG   D ++ N +I++
Sbjct: 113 SLFVDMLYSQ-IQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYM 171

Query: 124 FVS-----------------------------------CGDLGLACNVFDESCVRNLVSW 148
           + +                                   CG++  + N+FD+   R  VSW
Sbjct: 172 YANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSW 231

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NS+I+G+VR+G   EA+ LF  MQ+E  E  E TM+ +++ACA L  L  G+ +H YI  
Sbjct: 232 NSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKR 291

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +   L V +  A++DMY KCG +E+A E+F++                            
Sbjct: 292 NHFELNVIVVTAIIDMYCKCGSVENAVEVFET---------------------------- 323

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGA 327
               P + +  WN+II G       +EA   F +++++  +KPD+V+ +  L+AC  LGA
Sbjct: 324 ---CPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGA 380

Query: 328 LDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           ++    +    + K     ++   T +VD+  + G + +A ++   MP            
Sbjct: 381 INKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMP------------ 428

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
                                 L PD I +  +LS+C     V   R+       ++ L+
Sbjct: 429 ----------------------LKPDAIIWGSLLSSCRKHRNVQIARR---AAQRVYELN 463

Query: 447 PK-LKHYSCMVDLLGRSGLLEEA--------EQLIRSMPMAADVVVWGAL--FFA-CRLH 494
           P     Y  M ++   S   EEA        E L    P  + + ++G +  F A  RLH
Sbjct: 464 PSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFIAGGRLH 523


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 341/589 (57%), Gaps = 41/589 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLD--YCTKILFN-VQNPNSFSWNVAIRGFLETG 57
           + +TGL   GF  ++L+     +++ N+    C + LF+   +P+ F WN  +R +   G
Sbjct: 98  LLVTGLQYGGFLIAKLV-----NKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
               A+++Y +M +     PD F++P + K C++L    +G  + G + + GF+ D++V 
Sbjct: 153 FFGHAIEMYARM-QVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQ 211

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N ++ ++  CG++  A  VF     R +VSW S+I+G+ ++G P EA+R+F +M+   V 
Sbjct: 212 NGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVR 271

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD + ++ ++ A   +EDL  G+ IH  + + GL     L  +L  +Y KCG +      
Sbjct: 272 PDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVM----- 326

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
                                     +AR  F+ +    ++ WNA+I GYV+   ++EA+
Sbjct: 327 --------------------------VARLFFNQVENPSLIFWNAMISGYVKNGYAEEAI 360

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF  M++  I+PD++T    ++AC+Q+G+L+   W+  +I    F  +V++ T+L+D Y
Sbjct: 361 ELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTY 420

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG++  A  VF  +P+++ + ++A++ G  LHG+  ++I  F  M   G+ P+++TF+
Sbjct: 421 AKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFV 480

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+L+AC + GLV+EG   F +M   + + P+ +HY+C+VDLLGR+G L+ A   + +MP+
Sbjct: 481 GLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPI 539

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
              V VWGAL  AC++H +V++GE AA +L  LDP ++G YV L+N+Y  S +W+   KV
Sbjct: 540 EPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKV 599

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           R +M E+G+ K  G S IE+NG L  F   DK+HP  ++I++ +  L R
Sbjct: 600 RVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLER 648



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/516 (25%), Positives = 230/516 (44%), Gaps = 47/516 (9%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT------RPDNFTYPLLFKVCASLG 93
           +P  F +  +   FLET     +++L      N         +PD F   L+        
Sbjct: 32  DPPPFRFPASTLKFLET-HYSSSLNLTTHFNNNKDDCNESTFKPDKFYASLIDDSIHKTH 90

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
           L     +I+  +L  G     ++   +++   + G++  A  +FD+    ++  WN+++ 
Sbjct: 91  LN----QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVR 146

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
            + R GF   AI ++  MQ+  V PD  +   ++ AC+ L  L +GR +H  I   G   
Sbjct: 147 CYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFES 206

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            V + N L+ +Y KCG++  A  +F  +V++T+VS T++I GYA+ G             
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNG------------- 253

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                             +  EAL +F EM+ T ++PD +  V  L A + +  L+ G  
Sbjct: 254 ------------------QPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH  + K        L  +L  +YAKCG++  A   F+++   + + + A+I G   +G 
Sbjct: 296 IHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGY 355

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           A +AI  F  M    + PD IT    ++AC   G ++  R +  +  S+      +   +
Sbjct: 356 AEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELAR-WMDEYISMSEFRNDVIVNT 414

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN--VSIGERAAMKLLELD 511
            ++D   + G ++ A  +   +P   DVVVW A+     LHG    SI    AM+   + 
Sbjct: 415 SLIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVS 473

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           P D   +V L    ++S + EE   +   M + G+E
Sbjct: 474 PNDV-TFVGLLTACKNSGLVEEGWDLFHRMRDYGIE 508


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/592 (35%), Positives = 327/592 (55%), Gaps = 51/592 (8%)

Query: 6   LISHGFA-----PSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +I++GF        +L+  CA    K + Y  ++   + +PN   WN   RG+ ++   R
Sbjct: 124 IIANGFQYNEYITPKLVTICATL--KRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYR 181

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           E V L+ QM +    RP+ FT+P++ K C  +     G ++   ++K GF  + +V   +
Sbjct: 182 EVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTL 240

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++ + G +G A  +F E   RN+V+W S+ING++ S     A RLF D+  ER     
Sbjct: 241 IDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF-DLAPER----- 294

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
                                             V L N ++  Y++ G +  A ++F  
Sbjct: 295 ---------------------------------DVVLWNIMVSGYIEGGDMVEARKLFXE 321

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M N+ V+   T++ GYA  G ++    +F+++PE+ +  WNA+IGGY       E L  F
Sbjct: 322 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 381

Query: 301 HEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
             M   + + P+  T V  LSAC++LGALD G W+H + E      NV +G AL+DMYAK
Sbjct: 382 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 441

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG I  A+ VF  M  ++ +++  +IGGLA+H +  DA++ F +M   G  PD ITF+GI
Sbjct: 442 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 501

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H GLV++G  YF  M+  + + P+++HY CMVD+L R+G LE+A   +R MP+ A
Sbjct: 502 LCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEA 561

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D V+W  L  ACR++ NV + E A  +L+EL+P++   YV+L+N+Y D+  WE+  +++ 
Sbjct: 562 DGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKV 621

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC---LVQLTRHF 588
            M + G +K PGCS IEVN  + EF   D+ HP++E+IY     LV++ R F
Sbjct: 622 AMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSF 673



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 182/399 (45%), Gaps = 46/399 (11%)

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           ++I   ++  GF  + Y+   ++ +  +   +  A  +FD+    N+  WNS+  G+ +S
Sbjct: 118 HQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS 177

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
              RE + LF  M+   + P+  T   ++ +C ++  L  G ++H ++ + G      + 
Sbjct: 178 ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVG 237

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
             L+DMY   G +  A +IF  M  + VV+ T+MI GY     L  AR++FD  PE+ VV
Sbjct: 238 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 297

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN ++ GY++     EA  LF EM                                   
Sbjct: 298 LWNIMVSGYIEGGDMVEARKLFXEMP---------------------------------- 323

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
                N +V+    ++  YA  GN+     +F EMPERN  ++ A+IGG A +G   + +
Sbjct: 324 -----NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVL 378

Query: 399 SYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIFRLSPKLKHYSCM 455
             F  M+    + P++ T + +LSAC   G +D G+    +A+ S    L   +   + +
Sbjct: 379 GSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSG---LKGNVYVGNAL 435

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +D+  + G++E A  + R M    D++ W  L     +H
Sbjct: 436 MDMYAKCGIIENAISVFRGMD-TKDLISWNTLIGGLAMH 473


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 332/585 (56%), Gaps = 37/585 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG+  HG + ++LI   + +   +++   ++          +WN  I  +   G M 
Sbjct: 30  MILTGIFGHGNSNAKLIQ--SYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMF 87

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           EA+ LY +M   G  RPD+ TY ++ K C  SL LR  G E +   +  G+  D++V  A
Sbjct: 88  EALSLYHRMASEG-VRPDSSTYTVVLKACTRSLDLRS-GEETWRQAVDQGYGDDVFVGAA 145

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           V++++  CG +  A  VFD+   R+LV W ++I G  ++G  REA+ ++R M  +RVE D
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGD 205

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            V M+G++ AC  L    +G  IH Y+    + + V +  +L+DMY              
Sbjct: 206 GVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMY-------------- 251

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                            AK G L++A  +F  +  K V+ W+A+I G+ Q   +  AL L
Sbjct: 252 -----------------AKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQL 294

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
             +MQ+ G KPD+V+ V  L ACSQ+G L  G  +H +I +   + + V  TA++DMY+K
Sbjct: 295 VVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSK 353

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+++ A  VF ++  R+S+++ AII    +HG   +A+S F +M    + PD  TF  +
Sbjct: 354 CGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASL 413

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSA  H GLV++GR +F+ M + +++ P  KHY+CMVDLL R+G +EEA++LI SM    
Sbjct: 414 LSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEP 473

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
            + +W AL   C  HG   IGE AA K+LEL+P D GIY L++N +  +  W+E  +VRK
Sbjct: 474 GIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRK 533

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +M++ G++K PG S +EVNG L+ F++ DKSH + E+I   L +L
Sbjct: 534 IMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKL 578


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/506 (37%), Positives = 298/506 (58%), Gaps = 12/506 (2%)

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           NFT P   K            ++  H+LK    +     + V  V         A  +F 
Sbjct: 24  NFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQ 71

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
                 +  WN+ +  F     P +AI LF  ++   + PD  T   ++ AC++L D+  
Sbjct: 72  LLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+ +H Y+ + GL   + L N ++ +Y  CG++  A ++FD M  + V++   MI    K
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G  + A K+F ++PE+ V  W ++IGGY Q  +SKEA+ LF EM+  G+ P+ VT V  
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAV 251

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L AC+ +G L  G  IH F  +  +  N+ +   L+DMY KCG +  A ++F  M ER  
Sbjct: 252 LVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTV 311

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           ++++A+I GLA HG+A DA++ F++MI  G+ P+ +TF+GIL AC H G+V++GRKYFA 
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFAS 371

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+  + + P+++HY CMVDL  R+GLL+EA + I +MP+A + VVWGAL   C++H N+ 
Sbjct: 372 MTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIK 431

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           + E A   L +LDP + G YV+L+N+Y ++  WE+  +VRK+M +RGV+KTPG SSI V 
Sbjct: 432 LAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVE 491

Query: 559 GLLYEFIVRDKSHPELEQIYDCLVQL 584
           G++Y F+  D +HP+ E+I+    +L
Sbjct: 492 GVVYNFVAGDDTHPQTEEIFQTWEKL 517



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 216/431 (50%), Gaps = 78/431 (18%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRN 72
           SR+ + CA + S    Y  K++F + + +  + WN  +R F E     +A+ L+ + LR 
Sbjct: 51  SRVASVCAFNSS--FSY-AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYR-LRE 106

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
               PD++T   + K C+ L     G  + G+V KLG   +M++ N ++H++  CG++G+
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166

Query: 133 ACNVFDESCVRNLVSWN-------------------------------SLINGFVRSGFP 161
           A  VFD+   R++++WN                               S+I G+ + G  
Sbjct: 167 ARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKS 226

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EAI LF +M+   + P+EVT++ ++ ACA + +L LGR IH + + SG    + + N L
Sbjct: 227 KEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTL 286

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMYVKCG LE A  IFD+M  +TVVS + MI G A  G                     
Sbjct: 287 IDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG--------------------- 325

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                     R+++ALALF++M  TG+KP+AVT +  L ACS +G ++ G    ++    
Sbjct: 326 ----------RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKG---RKYFASM 372

Query: 342 NFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK--- 393
             +  +V        +VD++++ G + +A +    MP   N + + A++GG  +H     
Sbjct: 373 TRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKL 432

Query: 394 ALDAISYFSEM 404
           A +A  + S++
Sbjct: 433 AEEATRHLSKL 443


>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 553

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/515 (36%), Positives = 302/515 (58%), Gaps = 3/515 (0%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  IR F  +     A+ +Y   ++     PD +TYP + K C  +G    G E+  H
Sbjct: 40  TWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAH 99

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V K G D D+YV NA++H++ S G +  A  +FD    R+L SWN+L+  +  +    E 
Sbjct: 100 VTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYNDNAV--EV 157

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF+ M  E +  D ++M+ + SAC ++     G+E+H Y+ + G+   + L+NAL+ +
Sbjct: 158 LVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGV 217

Query: 225 YVKCGKLESAEEIFDSMVN-KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           Y KCG++++A+ +F  M   + VVS T +  GY   G +D+AR IFD +  K +V WN++
Sbjct: 218 YTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSM 277

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I  YV+AK  K+A+ LF +M+   ++PD  T V  L+AC+ L  L +G   HRFI + N 
Sbjct: 278 IHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNP 337

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             ++ +GTAL+DMYAKCG++ +A+  F++M  R+  T+T  I GLA HG    A+S F+E
Sbjct: 338 RQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTE 397

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M   G+ P++ TF+ +L AC   GLV EG   F +M   +++ PK++H  C++D+L R+G
Sbjct: 398 MEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAG 457

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           LL +AE+ I+ MP    ++    L  AC  H    +GE+ A  L EL  Q    ++LL+N
Sbjct: 458 LLHQAEEFIKLMPPKEKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSHATHILLSN 517

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
            Y  +  W E  K R++M+E  + K PG SS+++ 
Sbjct: 518 FYALAGQWAEVAKTRRVMKEIDIRKVPGISSVDIK 552


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 316/549 (57%), Gaps = 26/549 (4%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           G   S+LI FC  S   +++    +   +  P+ + WN  IRGF+     R ++ LY+Q+
Sbjct: 25  GLILSKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQL 84

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           + NG + PD+FT+P + K C ++  +  G  I   ++K GF+ D Y    ++H++VSC D
Sbjct: 85  IENGYS-PDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCAD 143

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +     VFD   + N+V+W  LI G+V +  P EA+++F+DM    VEP+E+TM+  +  
Sbjct: 144 MKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIX 203

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           CA+  D + G+ +H +I ++G                         + F S  N  ++  
Sbjct: 204 CARSRDFDTGQWVHQHIRKAGY------------------------DPFMSTSNSNIILA 239

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T ++  YAK G   IAR +F+ +P++ +V WN++I  Y Q +R KEAL LF +M  +GI 
Sbjct: 240 TAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIY 299

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD  T +  LS C+ L AL  G  +H ++ K     ++ L TAL+DMYAK G +  A ++
Sbjct: 300 PDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKI 359

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGILSACCHGGL 428
           F  + +R+ + +T++I GLA+HG   +A+  F  M     L+PD IT++G+L AC H GL
Sbjct: 360 FSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVLFACSHVGL 419

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           V+E +K+F  M+ ++ + P  +HY CMVDLL RSG   EAE+L+ +M +  ++ + GAL 
Sbjct: 420 VEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPNISIXGALL 479

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
           + C++H N+ +  +   +L EL+   SG +VLL+N+Y  +  WE+    RK+M+ + + K
Sbjct: 480 YGCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGTRKVMKHKRITK 539

Query: 549 TPGCSSIEV 557
             G SS+E+
Sbjct: 540 IIGHSSVEM 548


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/572 (36%), Positives = 319/572 (55%), Gaps = 34/572 (5%)

Query: 17  IAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           I  C  +++  LD   K+   + +    S+   I G ++    REA++++K M R+ G  
Sbjct: 340 IMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDM-RSDGVV 398

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P++ T   +   C+  G       I    +KL  +  + V   ++  +  C  +G A  +
Sbjct: 399 PNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRL 458

Query: 137 FDESCVRNLVSWNSLINGFVRSG--------FPR-----------------------EAI 165
           FD     NLVSWN ++NG+ ++G        F R                       EA+
Sbjct: 459 FDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEAL 518

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            ++R M    +  +E+ ++ +VSAC +L  +  G ++H  + + G      +   ++  Y
Sbjct: 519 VMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFY 578

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
             CG ++ A   F+      + S   ++ G+ K   +D ARKIFDD+PE+ V  W+ +I 
Sbjct: 579 AACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMIS 638

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY Q  +S+ AL LFH+M A+GIKP+ VT V   SA + LG L +G W H +I  E+  L
Sbjct: 639 GYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPL 698

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPER--NSLTYTAIIGGLALHGKALDAISYFSE 403
           N  L  AL+DMYAKCG+I  ALQ F+++ ++  +   + AII GLA HG A   +  FS+
Sbjct: 699 NDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSD 758

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M    + P+ ITF+G+LSACCH GLV+ GR+ F  M S + + P +KHY CMVDLLGR+G
Sbjct: 759 MQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAG 818

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           LLEEAE++IRSMPM AD+V+WG L  ACR HG+V+IGERAA  L  L P   G  VLL+N
Sbjct: 819 LLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSN 878

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           +Y D+  WE+   VR+ ++ + +E+ PGCS +
Sbjct: 879 IYADAGRWEDVSLVRRAIQNQRMERMPGCSGV 910



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 222/468 (47%), Gaps = 70/468 (14%)

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG--------------LACNV------- 136
           G ++   VLKLG   + ++ N++I+++   G +               ++CN+       
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347

Query: 137 ----------FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
                     FD    +  VS+ ++I G V++   REA+ +F+DM+ + V P+++T++ +
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNV 407

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           + AC+   ++   R IH    +  +   V ++  LM  Y  C  +  A  +FD M    +
Sbjct: 408 IYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNL 467

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           VS   M+ GYAK G +D+AR++F+ +P+K V+ W  +I GY+   R  EAL ++  M  +
Sbjct: 468 VSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRS 527

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG----- 361
           G+  + +  V+ +SAC +L A+ DG  +H  + K+ F+    + T ++  YA CG     
Sbjct: 528 GLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLA 587

Query: 362 --------------------------NIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
                                      + +A ++F +MPER+  +++ +I G A   ++ 
Sbjct: 588 CLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSR 647

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHY 452
            A+  F +M+  G+ P+E+T + + SA    G + EGR   +Y    S    L+  L+  
Sbjct: 648 IALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNES--IPLNDNLR-- 703

Query: 453 SCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGNVSI 499
           + ++D+  + G +  A Q    +      V  W A+      HG+ S+
Sbjct: 704 AALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASM 751



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 192/404 (47%), Gaps = 64/404 (15%)

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           VS++S  N       P+  I +F + +L +   +    + +VSA       + GR++H  
Sbjct: 237 VSFSSSTNASPHVQDPQHFIGIFCNARLHQNHYE--CELALVSALKYCSSSSQGRQLHSL 294

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           + + GL     + N+L++MY K G ++ A+ +FD+      +SC  M+ GYAK G LD A
Sbjct: 295 VLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNA 354

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           RK+FD +P+K  V +  +I G VQ +  +EAL +F +M++ G+ P+ +T V+ + ACS  
Sbjct: 355 RKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHF 414

Query: 326 GALDDGIWIHR-----FIE----------------------KENFN----LNVVLGTALV 354
           G + +   IH      F+E                      +  F+    +N+V    ++
Sbjct: 415 GEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVML 474

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           + YAK G +  A ++F  +P+++ +++  +I G  L  +  +A+  +  M+  GL  +EI
Sbjct: 475 NGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEI 534

Query: 415 TFLGILSAC-----------CHGGLVDEGRK--YFAQMSSI---------------FRLS 446
             + ++SAC            HG +V +G     F Q + I               F + 
Sbjct: 535 LVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVG 594

Query: 447 PK--LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            K  L+ ++ +V    ++ ++++A ++   MP   DV  W  + 
Sbjct: 595 AKDHLESWNALVSGFIKNRMVDQARKIFDDMP-ERDVFSWSTMI 637


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 319/574 (55%), Gaps = 28/574 (4%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           DY  K+   +  PN++ W   I G++E  +  EA  L+ QM R   +   NFT   + K 
Sbjct: 52  DYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVL-NFTISSVLKA 110

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
            A L     G  ++G VLK GF  D+ V N+V+ +F+ C  +  A   FDE C +++VSW
Sbjct: 111 LARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSW 170

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI-------GMVSACAQLEDLNLGRE 201
           N +I+G+  +    +  R F D   ER      +MI        M  A    + + +   
Sbjct: 171 NMMISGYGNND-RVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDL 229

Query: 202 IHWYISESGLTLTVPLANA-----------------LMDMYVKCGKLESAEEIFDSMVNK 244
             W +  SG        NA                 ++  + K G+LESA++ FD M NK
Sbjct: 230 ASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNK 289

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            V+S   M+ GY K G  + AR +FD +P K +V W+ +IGGY +  +  +AL LF   +
Sbjct: 290 NVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFK 349

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              IKPD    +  +SACSQLG +D     IH ++     + ++ + T+L+DMYAKCG+I
Sbjct: 350 EQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSI 408

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KALQ+F     ++ L Y+ +I  LA HG   DAI  F +M    + PD +TFLG+L+AC
Sbjct: 409 EKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTAC 468

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            HGGLVDEGRKYF QM+  F + P  KHY+C+VDLLGR G LEEA  LIR+MP+A   VV
Sbjct: 469 NHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVV 528

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL  ACR+H NV + E AA +L +++P +SG Y+LL+N+Y  +  W    KVR  + E
Sbjct: 529 WGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIRE 588

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
             V K  G S IE++ +++EF++ D SH + + I
Sbjct: 589 HRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSI 622



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 223/464 (48%), Gaps = 35/464 (7%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           +V N ++ ++   G    A  VFDE    N   W SLI+G+V +    EA  LF  M+ E
Sbjct: 36  FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            +     T+  ++ A A+L     G+ ++ ++ + G    + + N+++D++++C K+++A
Sbjct: 96  PISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTA 155

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            + FD M  K +VS   MI GY     +DIARK FD +PE+ VV W ++I GYV+A    
Sbjct: 156 RQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMA 215

Query: 295 EALALFHEMQATGIKPDAVTTV------HCLSACSQLGAL---DDGIW---IHRFIE--- 339
           EA  LF  M    +    V          C++A    G +   D G W   I  F +   
Sbjct: 216 EAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGE 275

Query: 340 ----KENF----NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
               K+ F    N NV+    ++D Y K G+   A  +F +MP +N +T++ +IGG A +
Sbjct: 276 LESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARN 335

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G+ L A+  F       + PDE   LGI+SAC   G++D              LS  L+ 
Sbjct: 336 GQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRV 394

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMK 506
           ++ ++D+  + G +E+A Q+   M    D++ +  +  A   HG   +G  A      M+
Sbjct: 395 FTSLIDMYAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALANHG---LGRDAIFLFDKMQ 450

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGK-VRKMMEERGVEKT 549
              + P DS  ++ +        + +E  K  ++M EE G++ +
Sbjct: 451 RANIKP-DSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPS 493



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 135/323 (41%), Gaps = 69/323 (21%)

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVG-----YAKFGFLDIARKIFDDLPEKYVVPWNA 282
           C  L+S + I   ++ ++ V+ +  ++      Y++FG  D A K+FD++ +     W +
Sbjct: 12  CKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTS 71

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GYV+ ++  EA +LF +M+   I     T    L A ++L     G  ++ F+ K  
Sbjct: 72  LIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYG 131

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHE------------------------------ 372
           F  ++++  +++D++ +C  +  A Q F E                              
Sbjct: 132 FAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFD 191

Query: 373 -MPERNSLTYTAIIGGLALHGKALDAISYFSEM-------------------------IG 406
            MPERN +++T++I G    G   +A   F  M                         I 
Sbjct: 192 RMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARII 251

Query: 407 VGLMP--DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
            G MP  D  ++  ++S  C  G ++  + +F +M +   +S     +  M+D   ++G 
Sbjct: 252 FGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVIS-----WGIMLDGYIKNGD 306

Query: 465 LEEAEQLIRSMPMAADVVVWGAL 487
              A  L   MPM  ++V W  +
Sbjct: 307 TNGARCLFDQMPM-KNLVTWSTM 328


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/592 (35%), Positives = 327/592 (55%), Gaps = 51/592 (8%)

Query: 6   LISHGFA-----PSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           +I++GF        +L+  CA    K + Y  ++   + +PN   WN   RG+ ++   R
Sbjct: 61  IIANGFQYNEYITPKLVTICATL--KRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYR 118

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           E V L+ QM +    RP+ FT+P++ K C  +     G ++   ++K GF  + +V   +
Sbjct: 119 EVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTL 177

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++ + G +G A  +F E   RN+V+W S+ING++ S     A RLF D+  ER     
Sbjct: 178 IDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF-DLAPER----- 231

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
                                             V L N ++  Y++ G +  A ++F  
Sbjct: 232 ---------------------------------DVVLWNIMVSGYIEGGDMVEARKLFHE 258

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M N+ V+   T++ GYA  G ++    +F+++PE+ +  WNA+IGGY       E L  F
Sbjct: 259 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 318

Query: 301 HEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
             M   + + P+  T V  LSAC++LGALD G W+H + E      NV +G AL+DMYAK
Sbjct: 319 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 378

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG I  A+ VF  M  ++ +++  +IGGLA+H +  DA++ F +M   G  PD ITF+GI
Sbjct: 379 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 438

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H GLV++G  YF  M+  + + P+++HY CMVD+L R+G LE+A   +R MP+ A
Sbjct: 439 LCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEA 498

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D V+W  L  ACR++ NV + E A  +L+EL+P++   YV+L+N+Y D+  WE+  +++ 
Sbjct: 499 DGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKV 558

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC---LVQLTRHF 588
            M + G +K PGCS IEVN  + EF   D+ HP++E+IY     LV++ R F
Sbjct: 559 AMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSF 610



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 183/399 (45%), Gaps = 46/399 (11%)

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           ++I   ++  GF  + Y+   ++ +  +   +  A  +FD+    N+  WNS+  G+ +S
Sbjct: 55  HQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS 114

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
              RE + LF  M+   + P+  T   ++ +C ++  L  G ++H ++ + G      + 
Sbjct: 115 ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVG 174

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
             L+DMY   G +  A +IF  M  + VV+ T+MI GY     L  AR++FD  PE+ VV
Sbjct: 175 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 234

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN ++ GY++     EA  LFHEM                                   
Sbjct: 235 LWNIMVSGYIEGGDMVEARKLFHEMP---------------------------------- 260

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
                N +V+    ++  YA  GN+     +F EMPERN  ++ A+IGG A +G   + +
Sbjct: 261 -----NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVL 315

Query: 399 SYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIFRLSPKLKHYSCM 455
             F  M+    + P++ T + +LSAC   G +D G+    +A+ S    L   +   + +
Sbjct: 316 GSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSG---LKGNVYVGNAL 372

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +D+  + G++E A  + R M    D++ W  L     +H
Sbjct: 373 MDMYAKCGIIENAISVFRGMD-TKDLISWNTLIGGLAMH 410


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 323/573 (56%), Gaps = 40/573 (6%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLE--TGKMREAVDLYKQMLR 71
           SRL+  C  + ++   Y  ++L  +Q  +   W+  I  F    T   R +   Y+ M R
Sbjct: 39  SRLLRRCCTAATQ-FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRR 97

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLG-YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           NG   P   T+P L K  A   LR    ++   H++K G D D +V N++I  + S G  
Sbjct: 98  NG-VIPSRHTFPPLLK--AVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLF 154

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FD +  +++V+W ++I+GFVR+G   EA+  F +M+   V  +E+T++ ++ A 
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAA 214

Query: 191 AQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            ++ED+  GR +H    E+G +   V + ++L+DMY KC                   SC
Sbjct: 215 GKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC-------------------SC 255

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                        D A+K+FD++P + VV W A+I GYVQ++   + + +F EM  + + 
Sbjct: 256 ------------YDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+  T    LSAC+ +GAL  G  +H ++ K +  +N   GT L+D+Y KCG + +A+ V
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  + E+N  T+TA+I G A HG A DA   F  M+   + P+E+TF+ +LSAC HGGLV
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLV 423

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           +EGR+ F  M   F +  K  HY+CMVDL GR GLLEEA+ LI  MPM    VVWGALF 
Sbjct: 424 EEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFG 483

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           +C LH +  +G+ AA ++++L P  SG Y LLAN+Y +S  W+E  +VRK M+++ V K+
Sbjct: 484 SCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKS 543

Query: 550 PGCSSIEVNGLLYEFIVRDKSHP-ELEQIYDCL 581
           PG S IEV G L EFI  D   P E + +Y  L
Sbjct: 544 PGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTL 576


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/474 (41%), Positives = 295/474 (62%), Gaps = 17/474 (3%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE--AIRLFRDMQL-ERVEPDEVTMIG 185
           DL  A  +F++   RN  SWN++I GF  S   +   AI LF +M   E VEP+  T   
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-DSMVNK 244
           ++ ACA+   +  G++IH    + G      + + L+ MYV CG ++ A  +F  +++ K
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 245 TVVSCT-------------TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
            +V  T              MI GY + G    AR +FD + ++ VV WN +I GY    
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             K+A+ +F EM+   I+P+ VT V  L A S+LG+L+ G W+H + E     ++ VLG+
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DMY+KCG I KA+ VF  +P  N +T++A+I G A+HG+A DAI  F +M   G+ P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
            ++ ++ +L+AC HGGLV+EGR+YF+QM S+  L P+++HY CMVDLLGRSGLL+EAE+ 
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           I +MP+  D V+W AL  ACR+ GNV +G+R A  L+++ P DSG YV L+NMY     W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            E  ++R  M+E+ + K PGCS I+++G+L+EF+V D SHP+ ++I   LV+++
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEIS 547



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 209/440 (47%), Gaps = 82/440 (18%)

Query: 4   TGLISHGFAPSRLIAFCAISE--SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +G +    A + ++ FCA S+   ++LDY  KI   +   N FSWN  IRGF E+ + + 
Sbjct: 49  SGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKA 108

Query: 62  --AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ L+ +M+ +    P+ FT+P + K CA  G    G +I G  LK GF  D +V + 
Sbjct: 109 LIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSN 168

Query: 120 VIHVFVSC---------------------------------------------GDLGLAC 134
           ++ ++V C                                             GD   A 
Sbjct: 169 LVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAAR 228

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            +FD+   R++VSWN++I+G+  +GF ++A+ +FR+M+   + P+ VT++ ++ A ++L 
Sbjct: 229 MLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLG 288

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L LG  +H Y  +SG+ +   L +AL+DMY KCG +E A  +F+ +  + V++      
Sbjct: 289 SLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVIT------ 342

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                                    W+A+I G+    ++ +A+  F +M+  G++P  V 
Sbjct: 343 -------------------------WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377

Query: 315 TVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
            ++ L+ACS  G +++G  +  + +  +     +     +VD+  + G + +A +    M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437

Query: 374 P-ERNSLTYTAIIGGLALHG 392
           P + + + + A++G   + G
Sbjct: 438 PIKPDDVIWKALLGACRMQG 457


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 340/620 (54%), Gaps = 75/620 (12%)

Query: 4   TGLISHGFAPSRLIAFCA----ISESKNL-DYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           +GL+S+ F  + LI+F      IS +++L D C+     V +P   S N+ + G++++G 
Sbjct: 81  SGLLSNIFVKNSLISFYVKCRLISNARSLFDTCS-----VLDP--VSCNIMLAGYVKSGS 133

Query: 59  MREAVDLYKQM------------------------------LRNGGTRPDNFTYPLLFKV 88
           +  A  L+++M                              +R  G  P+  T   +   
Sbjct: 134 LDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISA 193

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
            + +G       +     KLG +    V   ++H++  C  LG A  +FDE   RN+V+W
Sbjct: 194 YSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTW 253

Query: 149 NSLINGFVRSG--------FPR-----------------------EAIRLFRDMQLERVE 177
           N ++NG+ +SG        F R                       EA+R++R M    V 
Sbjct: 254 NVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVG 313

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+EV ++ ++SAC +   ++ G++ H  I  +G      +   ++  Y  CG++  A   
Sbjct: 314 PNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQ 373

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F+      V S   +I G+ + G ++ AR++FD++PE+ V  W+++I GY Q ++   AL
Sbjct: 374 FELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLAL 433

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LFHEM A G++P+ +T V   SA + LG L +G W H +I   +  LN  L  AL+DMY
Sbjct: 434 QLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMY 493

Query: 358 AKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           AKCG+I  ALQ+F+E+ +R S    + AII GLA+HG A  ++  FS++  V + P+ IT
Sbjct: 494 AKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSIT 553

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+LSACCH GLVD G KYF  M +++ + P +KHY CM+DLLGR+G L+EA ++IR M
Sbjct: 554 FIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKM 613

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM ADVV+WG L  ACR HGNV IGERAA  L +LD       VLL+N+Y D+  W++A 
Sbjct: 614 PMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAF 673

Query: 536 KVRKMMEERGVEKTPGCSSI 555
            VR+ M+ + ++K+PGCS +
Sbjct: 674 LVRRAMQSQRMKKSPGCSGV 693



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/511 (27%), Positives = 241/511 (47%), Gaps = 70/511 (13%)

Query: 72  NGGTRPDNFTYPLL--FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           N  T+  ++   L+   K C+SL     G +I   V K G   +++V N++I  +V C  
Sbjct: 43  NKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRL 102

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSG--------FPR------------------- 162
           +  A ++FD   V + VS N ++ G+V+SG        F +                   
Sbjct: 103 ISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQN 162

Query: 163 ----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
               EAI +F+DM+   V P+EVT+  ++SA + +  +   R +H    + GL     +A
Sbjct: 163 NCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVA 222

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
             L+ MY  C  L +A  +FD +  + VV+   M+ GY+K G +D+AR +F+ +P K VV
Sbjct: 223 TNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVV 282

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W  II GYVQ +R  EAL ++  M  TG+ P+ V  V  +SAC +  A+ +G   H  I
Sbjct: 283 SWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGII 342

Query: 339 EKENFNLNVVLGTALVDMYAKCGN-------------------------------IAKAL 367
            +  F+    +   ++  YA CG                                I +A 
Sbjct: 343 VRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQAR 402

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           Q+F EMPER+  +++++I G + + +   A+  F EM+  G+ P+EIT + + SA    G
Sbjct: 403 QLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLG 462

Query: 428 LVDEGR-KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWG 485
            + EGR  +   +S+   L+  L   + ++D+  + G +  A QL   +    + V  W 
Sbjct: 463 TLMEGRWAHEYILSNSIPLNDNLN--AALIDMYAKCGSITIALQLFYEIQDRVSSVSPWN 520

Query: 486 ALFFACRLHG--NVSIGERAAMKLLELDPQD 514
           A+     +HG  NVS+   + ++ + + P  
Sbjct: 521 AIICGLAMHGHANVSLKLFSQLQRVRIKPNS 551



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 179/389 (46%), Gaps = 63/389 (16%)

Query: 161 PREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           P + +R F +   +    D E+T++  + +C+ L  L+ G++IH  + +SGL   + + N
Sbjct: 32  PIDHLRAFFNGNKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKN 91

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+  YVKC  + +A  +FD+      VSC  M+ GY K G LD AR +F+ +P K  V 
Sbjct: 92  SLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVS 151

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           +  ++ G  Q     EA+ +F +M+  G+ P+ VT    +SA S +G + +   +H    
Sbjct: 152 YTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSF 211

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG------- 392
           K       ++ T LV MY  C ++  A  +F E+PERN +T+  ++ G +  G       
Sbjct: 212 KLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARD 271

Query: 393 -----KALDAISY-------------------FSEMIGVGLMPDEITFLGILSACCHGGL 428
                 A D +S+                   +  M+  G+ P+E+  + ++SAC     
Sbjct: 272 LFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMA 331

Query: 429 VDEGRKY-------------FAQMSSI---------------FRLSPK--LKHYSCMVDL 458
           V EG+++             F Q + I               F L  K  +  ++ ++  
Sbjct: 332 VSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISG 391

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             R+G++E+A QL   MP   DV  W ++
Sbjct: 392 FVRNGMIEQARQLFDEMP-ERDVFSWSSM 419


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 324/562 (57%), Gaps = 2/562 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ++  +D+  ++  ++   +  SWN+ +    ++G++REA+D+   M ++ G R D+ TY 
Sbjct: 216 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM-QSKGVRLDSTTYT 274

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                CA L     G ++   V++    +D YV +A++ ++  CG    A  VF+    R
Sbjct: 275 SSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDR 334

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           N V+W  LI GF++ G   E++ LF  M+ E +  D+  +  ++S C    DL LGR++H
Sbjct: 335 NNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               +SG    V ++N+L+ MY KC  L+SAE IF  M  K +VS T+MI  +++ G + 
Sbjct: 395 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIA 454

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSAC 322
            AR+ FD +  K V+ WNA++G Y+Q    ++ L +++ M     ++PD VT V     C
Sbjct: 455 KAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGC 514

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + LGA   G  I     K    L+  +  A++ MY+KCG I +A +VF  +  ++ +++ 
Sbjct: 515 ADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWN 574

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I G + HG    AI  F +++  G  PD I+++ +LS C H GLV EG+ YF  M  +
Sbjct: 575 AMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRV 634

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             +SP L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC++HGN  + E 
Sbjct: 635 HNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAEL 694

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  + ELD  DSG Y+L+A +Y D+   +++ ++RK+M ++G++K PG S +EVN  ++
Sbjct: 695 AAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVH 754

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
            F   D SHP++  I   L +L
Sbjct: 755 VFKADDVSHPQVIAIRKKLDEL 776



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 204/390 (52%), Gaps = 9/390 (2%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++  HN +++ +V  G L  A  +F     R++ SWN+L++G+ +S     ++  F  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 173 LE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P+  T    + +C  L + +L  ++   + + G      +A AL+DM+V+CG +
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A  +F  +   T+    +M+VGY K   +D A ++FD +PE+ VV WN ++    Q+ 
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R +EAL +  +MQ+ G++ D+ T    L+AC++L +L  G  +H  + +    ++  + +
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVAS 309

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALV++YAKCG   +A  VF+ + +RN++ +T +I G   HG   +++  F++M    +  
Sbjct: 310 ALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL 369

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY---SCMVDLLGRSGLLEEA 468
           D+     ++S CC    +  GR    Q+ S+   S +++     + ++ +  +   L+ A
Sbjct: 370 DQFALATLISGCCSRMDLCLGR----QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           E + R M    D+V W ++  A    GN++
Sbjct: 426 ESIFRFMN-EKDIVSWTSMITAHSQVGNIA 454



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 228/487 (46%), Gaps = 42/487 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ ++ +   +++ +  M R+G + P+ FT+    K C +LG R L  ++ G 
Sbjct: 104 SWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGM 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACN----------------------------- 135
           V K G   D  V  A++ +FV CG + LA                               
Sbjct: 164 VQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHA 223

Query: 136 --VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             +FD    R++VSWN +++   +SG  REA+ +  DMQ + V  D  T    ++ACA+L
Sbjct: 224 LELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARL 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  +   +   +A+AL+++Y KCG  + A+ +F+S+ ++  V+ T +I
Sbjct: 284 SSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+ + G    + ++F+ +  + +      +   +    S+  L L  ++ +  +K   +
Sbjct: 344 AGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 314 TTV----HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
             V      +S  ++   L     I RF+ ++    ++V  T+++  +++ GNIAKA + 
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSAESIFRFMNEK----DIVSWTSMITAHSQVGNIAKAREF 459

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGL 428
           F  M  +N +T+ A++G    HG   D +  ++ M+    + PD +T++ +   C   G 
Sbjct: 460 FDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGA 519

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
              G +   +   +  L       + ++ +  + G + EA ++   + +  D+V W A+ 
Sbjct: 520 NKLGDQIIGRTVKV-GLILDTSVANAVITMYSKCGRILEARKVFDFLNV-KDIVSWNAMI 577

Query: 489 FACRLHG 495
                HG
Sbjct: 578 TGYSQHG 584



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 144/328 (43%), Gaps = 34/328 (10%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N  +WN  +  +++ G   + + +Y  ML     RPD  
Sbjct: 446 AHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWV 505

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LFK CA LG   LG +I G  +K+G  +D  V NAVI ++  CG +  A  VFD  
Sbjct: 506 TYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFL 565

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
            V+++VSWN++I G+ + G  ++AI +F D+     +PD ++ + ++S C          
Sbjct: 566 NVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC---------- 615

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
                 S SGL   V    +  DM  +   +    E F  MV+         ++G A  G
Sbjct: 616 ------SHSGL---VQEGKSYFDMMKRVHNISPGLEHFSCMVD---------LLGRA--G 655

Query: 261 FLDIARKIFDDLPEKYVVP-WNAIIGG-YVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            L  A+ + D++P K     W A++    +        LA  H  +     PD+ + +  
Sbjct: 656 HLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELD--SPDSGSYMLM 713

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLN 346
               +  G  DD   I + +  +    N
Sbjct: 714 AKIYADAGKSDDSAQIRKLMRDKGIKKN 741



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 43/348 (12%)

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-DSMVNKTVVSCTTMIVGYAKFGF 261
           H  +   GL   V L N L+  Y+ CG L  A  +    + +  V++   M+ GY K G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLS 320
           L  A ++F  +P + V  WN ++ GY Q+++   +L  F  M  +G   P+A T  + + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN------------------ 362
           +C  LG     + +   ++K     +  +  ALVDM+ +CG                   
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 363 -------------IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
                        +  AL++F  MPER+ +++  ++  L+  G+  +A+    +M   G+
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEE 467
             D  T+   L+AC     +  G++  AQ   + R  P +  Y  S +V+L  + G  +E
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQ---VIRNLPCIDPYVASALVELYAKCGCFKE 323

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHG----NVSIGERAAMKLLELD 511
           A+ +  S+    + V W  L      HG    +V +  +   +L+ LD
Sbjct: 324 AKGVFNSLH-DRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLD 370


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 308/532 (57%), Gaps = 15/532 (2%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   +L + ++P+SFSW  AIR   + G+ +EA  LY QM R  G  P  F      K C
Sbjct: 57  YVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQR-WGLWPTTFALSSALKAC 115

Query: 90  ASLGLRFLGYEIFGHVLKLGFD---VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           A +  R  G  I G V K GF      +YV  A++  +   GD+ +A  +FDE   RN+V
Sbjct: 116 ARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVV 175

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWNS++ G+++SG    A R+F ++     + D ++   M+S  A+  D+     +   +
Sbjct: 176 SWNSMLAGYLKSGDLVVAQRVFDEIP----QKDVISWNSMISGYARAGDMEKALSLFQQM 231

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            E          NA++  YV+ G ++SA   FD+M  +  VS  TMI GY+K G +D A 
Sbjct: 232 PERNFASW----NAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSAC 287

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQ 324
           ++FD +  K ++ +NA+I  Y Q  R KEAL LF+ M      ++PD +T    +SACSQ
Sbjct: 288 ELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQ 347

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           LG L  G WI  ++ +    ++  L TAL+D+YAKCG+I KA ++FH + +++ + YTA+
Sbjct: 348 LGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAM 407

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G  ++GKA+DAI  F EM+   + P+ ITF+G+L+A  H GLV+EG   F  M   + 
Sbjct: 408 ILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKK-YN 466

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           L P + HY  MVDL GR+G L+EA +LI+SMPM     VWGAL  ACRLH NV  GE AA
Sbjct: 467 LVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAA 526

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
               EL+P  +G   LL+N+Y     W++  ++RK+ +E+G  K PGCS +E
Sbjct: 527 QHCFELEPDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 193/411 (46%), Gaps = 65/411 (15%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S +L    ++   +   +  SWN  I G+   G M +A+ L++QM         NF   
Sbjct: 186 KSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPER------NF--- 236

Query: 84  LLFKVCASLGLRFLGYEIFGHV--LKLGFDVDMYVHN----AVIHVFVSCGDLGLACNVF 137
                 AS      GY  FG +   +  FD     +N     +I  +  CGD+  AC +F
Sbjct: 237 ------ASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELF 290

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE--RVEPDEVTMIGMVSACAQLED 195
           D+   ++L+ +N++I  + ++  P+EA++LF +M      V+PDE+T+  ++SAC+QL D
Sbjct: 291 DQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGD 350

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L  G  I  Y+   G+ +   LA AL+D+Y KCG ++ A E+F  +  K +V+ T MI+G
Sbjct: 351 LRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILG 410

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
               G                               ++ +A+ LF EM    I P+++T 
Sbjct: 411 CGING-------------------------------KAIDAIKLFDEMVDAQIFPNSITF 439

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEM 373
           +  L+A +  G +++G   H F   + +NL  +V     +VD++ + G + +AL++   M
Sbjct: 440 IGLLTAYNHAGLVEEG--YHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSM 497

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIG---VGLMPDEITFLGILS 421
           P +    +  + G L L  +  + +  F E+       L PD   +  +LS
Sbjct: 498 PMQ---PHAGVWGALLLACRLHNNVE-FGEIAAQHCFELEPDTTGYCSLLS 544


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/622 (35%), Positives = 328/622 (52%), Gaps = 72/622 (11%)

Query: 35   LFNVQNPNSF-SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
            LFN        SWN  I G+       EA+ LYKQM ++ G +P   T+  L   C +  
Sbjct: 442  LFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM-QSEGVKPGRVTFLHLLSACTNSS 500

Query: 94   LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
                G  I   +L+ G   + ++ NA+++++  CG +  A NVF+ +  R+++SWNS+I 
Sbjct: 501  AYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIA 560

Query: 154  GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
            G  + G    A +LF +M+ E +EPD++T   ++  C   E L LGR+IH  I ESGL L
Sbjct: 561  GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 214  TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
             V L NAL++MY++CG L+ A E+F S+ ++ V+S T MI G+A  G    A ++F  + 
Sbjct: 621  DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 274  EKYVVP---------------------------------------WNAIIGGYVQAKRSK 294
                 P                                        NA+I  Y ++    
Sbjct: 681  NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT 740

Query: 295  EALALFHEM-------------------------------QATGIKPDAVTTVHCLSACS 323
            +A  +F +M                               Q  G+  +  + V  L+ACS
Sbjct: 741  DARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800

Query: 324  QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
               AL++G  +H  I K     +V +G AL+ MYAKCG++ +A +VF    E+N +T+ A
Sbjct: 801  SFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNA 860

Query: 384  IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
            +I   A HG A  A+ +F+ M   G+ PD  TF  ILSAC H GLV EG + F+ + S  
Sbjct: 861  MINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQH 920

Query: 444  RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
             LSP ++HY C+V LLGR+G  +EAE LI  MP   D  VW  L  ACR+HGNV++ E A
Sbjct: 921  GLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHA 980

Query: 504  AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
            A   L+L+ ++  +YVLL+N+Y  +  W++  K+R++ME RG+ K PG S IEV+ +++E
Sbjct: 981  ANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHE 1040

Query: 564  FIVRDKSHPELEQIYDCLVQLT 585
            FI  D+SHPE  +IY+ L +L+
Sbjct: 1041 FIAADRSHPETAEIYEELKRLS 1062



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 223/444 (50%), Gaps = 36/444 (8%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +N  I    + G   EA + Y QM R+ G   +  TY  +   C++      G  I  H+
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQM-RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            ++G   D+ + N++I ++  CGDL  A  +F+    R+L+SWN++I G+ R     EA+
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
           +L++ MQ E V+P  VT + ++SAC      + G+ IH  I  SG+     LANALM+MY
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            +CG +  A+ +F+    + ++S  +MI G+A+ G  + A K                  
Sbjct: 532 RRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYK------------------ 573

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                        LF EM+  G++PD +T    L  C    AL+ G  IH  I +    L
Sbjct: 574 -------------LFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +V LG AL++MY +CG++  A +VFH +  RN +++TA+IGG A  G+   A   F +M 
Sbjct: 621 DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKHYSCMVDLLGRSGL 464
             G  P + TF  IL AC     +DEG+K  A  ++S + L   + +   ++    +SG 
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGS 738

Query: 465 LEEAEQLIRSMPMAADVVVWGALF 488
           + +A ++   MP   D++ W  + 
Sbjct: 739 MTDARKVFDKMP-NRDIMSWNKMI 761



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 225/464 (48%), Gaps = 36/464 (7%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           ++L    ++   +   +  S+N  +  + +   + E + L+ QM  + G  PD  TY  L
Sbjct: 232 EDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM-SSEGIPPDKVTYINL 290

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
                +  +   G  I    +  G + D+ V  A+  +FV CGD+  A    +    R++
Sbjct: 291 LDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDV 350

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           V +N+LI    + G   EA   +  M+ + V  +  T + +++AC+  + L  G  IH +
Sbjct: 351 VVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSH 410

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           ISE G +  V + N+L+ MY +CG L  A                               
Sbjct: 411 ISEVGHSSDVQIGNSLISMYARCGDLPRA------------------------------- 439

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           R++F+ +P++ ++ WNAII GY + +   EA+ L+ +MQ+ G+KP  VT +H LSAC+  
Sbjct: 440 RELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
            A  DG  IH  I +     N  L  AL++MY +CG+I +A  VF     R+ +++ ++I
Sbjct: 500 SAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMI 559

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-YFAQMSSIFR 444
            G A HG    A   F EM   GL PD+ITF  +L  C +   ++ GR+ +   + S  +
Sbjct: 560 AGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           L   L +   ++++  R G L++A ++  S+    +V+ W A+ 
Sbjct: 620 LDVNLGN--ALINMYIRCGSLQDAYEVFHSL-RHRNVMSWTAMI 660



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 203/414 (49%), Gaps = 33/414 (7%)

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
           T  +   Y  L + C           I   +++ G   D+++ N +I+++V C  +  A 
Sbjct: 78  TETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAH 137

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VF +   R+++SWNSLI+ + + GF ++A +LF +MQ     P ++T I +++AC    
Sbjct: 138 QVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPA 197

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           +L  G++IH  I E+G      + N+L++MY KC  L SA ++F  +  + VVS      
Sbjct: 198 ELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS------ 251

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                                    +N ++G Y Q    +E + LF +M + GI PD VT
Sbjct: 252 -------------------------YNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT 286

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            ++ L A +    LD+G  IH+    E  N ++ +GTAL  M+ +CG++A A Q      
Sbjct: 287 YINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFA 346

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +R+ + Y A+I  LA HG   +A   + +M   G++ +  T+L +L+AC     +  G  
Sbjct: 347 DRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGEL 406

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
             + +S +   S  ++  + ++ +  R G L  A +L  +MP   D++ W A+ 
Sbjct: 407 IHSHISEVGH-SSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAII 458



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 222/466 (47%), Gaps = 38/466 (8%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   +  SWN  I  + + G  ++A  L+++M +  G  P   TY  +   C S 
Sbjct: 138 QVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM-QTAGFIPSKITYISILTACCSP 196

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G +I   +++ G+  D  V N++++++  C DL  A  VF     R++VS+N+++
Sbjct: 197 AELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTML 256

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             + +  +  E I LF  M  E + PD+VT I ++ A      L+ G+ IH      GL 
Sbjct: 257 GLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLN 316

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +  AL  M+V+CG +  A++  ++  ++ VV                         
Sbjct: 317 SDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVV------------------------ 352

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  +NA+I    Q    +EA   +++M++ G+  +  T +  L+ACS   AL  G 
Sbjct: 353 -------YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGE 405

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  I +   + +V +G +L+ MYA+CG++ +A ++F+ MP+R+ +++ AII G A   
Sbjct: 406 LIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRE 465

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  + +M   G+ P  +TFL +LSAC +     +G+        I R   K   +
Sbjct: 466 DRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIH---EDILRSGIKSNGH 522

Query: 453 --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             + ++++  R G + EA+ +      A D++ W ++      HG+
Sbjct: 523 LANALMNMYRRCGSIMEAQNVFEGT-RARDIISWNSMIAGHAQHGS 567



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 34/362 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++  ++++ N  SW   I GF + G+ R+A +L+ QM +N G +P   T+  + K C S 
Sbjct: 643 EVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQM-QNDGFKPVKSTFSSILKACMSS 701

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G ++  H+L  G+++D  V NA+I  +   G +  A  VFD+   R+++SWN +I
Sbjct: 702 ACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMI 761

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ ++G    A++    MQ + V  ++ + + +++AC+    L  G+ +H  I +  + 
Sbjct: 762 AGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQ 821

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +  AL+ MY KCG LE A+E+FD+   K VV+   MI  YA+ G            
Sbjct: 822 GDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGL----------- 870

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                               + +AL  F+ M   GIKPD  T    LSAC+  G + +G 
Sbjct: 871 --------------------ASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGN 910

Query: 333 WIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            I   +E ++  +  +     LV +  + G   +A  + ++MP   ++  +  ++G   +
Sbjct: 911 RIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRI 970

Query: 391 HG 392
           HG
Sbjct: 971 HG 972



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 131/282 (46%), Gaps = 12/282 (4%)

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           +  R  E   L +  Q    + +    V  +  C++  +L +   IH  + +     ++ 
Sbjct: 59  EQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIF 118

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           L   L++MY KC +++ A QVF +MP R+ +++ ++I   A  G    A   F EM   G
Sbjct: 119 LSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAG 178

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
            +P +IT++ IL+ACC    ++ G+K  ++ + + ++  P++++   ++++ G+   L  
Sbjct: 179 FIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPS 236

Query: 468 AEQLIRSMPMAADVVVWGAL--FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           A Q+   +    DVV +  +   +A + +    IG    M   E  P D   Y+ L + +
Sbjct: 237 ARQVFSGI-YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMS-SEGIPPDKVTYINLLDAF 294

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
              +M +E  ++ K+    G+      S I V   L    VR
Sbjct: 295 TTPSMLDEGKRIHKLAVNEGLN-----SDIRVGTALATMFVR 331


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/462 (40%), Positives = 285/462 (61%)

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           G  +++G D D +V  A++  + +C  +  A  VFD    R+LV+W  +++ +  +   R
Sbjct: 17  GIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYR 76

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           E + L   M+  RV PD+V +  ++S C     L  G+ IH YI  S + +   L++AL+
Sbjct: 77  ETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALI 136

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           +MY  C  +E A++I+  M  K +VS T M+ GYAK G ++IAR IF+ + EK VV W+A
Sbjct: 137 NMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSA 196

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I  Y +  +  E L LF++MQ  G+ PD +T +  +SAC+ +G+LD   WIH  +    
Sbjct: 197 MISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHG 256

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
           F   + +  AL+DM++KCG++  AL +F+ MP +N +T+T++I   A+HG    A++ F 
Sbjct: 257 FYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFG 316

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M G G+ P+ +TFL +L ACCH GLV EGR  F  M   +R+ PK +HY CMVDL+GR+
Sbjct: 317 QMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRA 376

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
            L++EA  LI SM +  +V +WG+L  AC +HG++ +GE AA K+LELDP   G YVLL+
Sbjct: 377 KLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLS 436

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
           N++  S  W  A K+R MM+  GV K  G S +E+N  ++ F
Sbjct: 437 NIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGF 478



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 63/318 (19%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +W V +  +  T   RE + L  +M R+    PD      +   C        G  I  +
Sbjct: 61  AWGVMLDSYFNTQNYRETLLLLNKMKRSR-VVPDQVILATVLSTCGHTRHLRSGKTIHSY 119

Query: 105 VLKLGFDVDMYVHNAVIHVFVSC-------------------------------GDLGLA 133
           +      VD  + +A+I+++ SC                               G + +A
Sbjct: 120 IQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIA 179

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++F+    +++VSW+++I+ +  +  P E + LF  MQ   V PDE+TM+ ++SACA +
Sbjct: 180 RSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANI 239

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L+  R IH  +   G    + + NAL+DM+ KCG L  A  +F++M  K V++ T+MI
Sbjct: 240 GSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMI 299

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
             +A  G          D P                      AL LF +M+  G++P+ V
Sbjct: 300 AAFAMHG----------DGP---------------------SALTLFGQMKGEGVEPNGV 328

Query: 314 TTVHCLSACSQLGALDDG 331
           T +  L AC   G + +G
Sbjct: 329 TFLVLLYACCHAGLVYEG 346


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 330/590 (55%), Gaps = 48/590 (8%)

Query: 10  GFAPSRLIAFCAISE---SKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVD 64
           GF+  R I   A+     S N +  T  LFN  V   N FSWN  I     +G   EA+ 
Sbjct: 81  GFSKRRSICAGAVLRRRYSNNPNLTT--LFNKYVDKTNVFSWNSVIAELARSGDSVEALR 138

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
            +  M R    +P+  T+P   K C++L     G +     L  GF+ D++V +A++ ++
Sbjct: 139 AFSSM-RKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMY 197

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--------V 176
             CG+L  A  +FDE   RN+VSW S+I G+V++     A+ LF++  +E         V
Sbjct: 198 SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEV 257

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
             D + M+ ++SAC+++ + ++   +H ++ + G    + + N LMD Y KCG+      
Sbjct: 258 CVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGE------ 311

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
                                    L ++R++FD + E+ V+ WN+II  Y Q   S E+
Sbjct: 312 -------------------------LGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 297 LALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           + +FH M   G I  +AVT    L AC+  G+   G  IH  + K     NV +GT+++D
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY KCG +  A + F  M E+N  +++A++ G  +HG A +A+  F EM   G+ P+ IT
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+ +L+AC H GL++EG  +F  MS  F + P ++HY CMVDLLGR+G L+EA  LI+ M
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
            +  D VVWGAL  ACR+H NV +GE +A KL ELDP++ G YVLL+N+Y D+  WE+  
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVE 586

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           ++R +M+  G+ K PG S +++ G ++ F+V D+ HP+ E+IY+ L +L+
Sbjct: 587 RMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLS 636


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 332/561 (59%), Gaps = 29/561 (5%)

Query: 1   MTITGLISHGFAP-SRLIAFCAISE-SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           +T    I+    P S+LI FC  S   +  +Y   +   + +PN + +N  I+G+ ++  
Sbjct: 28  LTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNN 87

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
              ++ LYKQML+NG + PD+FT+P + K C+ +  +  G  +   +LK GF+ ++YV  
Sbjct: 88  PTMSLHLYKQMLQNGYS-PDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVAT 146

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            +++++V C ++     VFD+    N+V+W  LING+V +  PREA+ +F++M    VE 
Sbjct: 147 GLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEA 206

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +EVTM+  + ACA+  D++ GR +H  + ++G            D +V           F
Sbjct: 207 NEVTMVNALIACARCRDVDTGRWVHERVCKAGY-----------DPFV-----------F 244

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
            S  N  V+  T ++  YAK G+L++AR++F+ +PE+ +V WN +I  Y Q +R  EAL 
Sbjct: 245 AS--NSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALG 302

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF  M A G  PD  T +  LS C++   L  G  +H ++ K N   ++ L TAL+DMYA
Sbjct: 303 LFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYA 362

Query: 359 KCGNIAKALQVFHE-MPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITF 416
           K G +  A ++F+  + +++ + +T++I  LA+HG   +A+S F  M     L+PD IT+
Sbjct: 363 KNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITY 422

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           +G+L AC H GLV+E +K F  M+  + + P+ +HYSCMVDLL R+G   EAE+L+ +M 
Sbjct: 423 IGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETMS 482

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  ++ +WGAL   C++H N+ +  +  ++L EL+P  SGIY LL+N+Y +S  WEE  +
Sbjct: 483 IRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEEVNR 542

Query: 537 VRKMMEERGVEKTPGCSSIEV 557
            RKMM+ + + KT G SS+E+
Sbjct: 543 TRKMMKHKRIAKTIGHSSVEM 563


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 307/529 (58%), Gaps = 34/529 (6%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC--GDLGLACNVFDESCV 142
           LF   +   L++L  ++   VL+ G   D YV  A++  + +    +   A  VF     
Sbjct: 37  LFDSKSITSLQYL-TQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPN 95

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            N+  WN +I G + +    +AI  +  M ++   P++ T   +  AC+  + +  GR+I
Sbjct: 96  PNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQI 154

Query: 203 HWYISESGLTLTVPLA------------------------------NALMDMYVKCGKLE 232
           H ++ + G+   V +                               N ++D Y+KCG LE
Sbjct: 155 HGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLE 214

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A+ +F  M  K + S   MI G AK G L  ARK+FD++ E+  + W++++ GY+ A R
Sbjct: 215 AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGR 274

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            KEAL +F +MQ    +P        L+ACS +GA+D G W+H ++++ +  L+ VLGTA
Sbjct: 275 YKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA 334

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMYAKCG +    +VF EM ER   T+ A+IGGLA+HG+A DA+  FS++    + P+
Sbjct: 335 LLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPN 394

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            IT +G+L+AC H G VD+G + F  M   + + P+L+HY CMVDLLGRSGL  EAE LI
Sbjct: 395 GITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLI 454

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
            SMPM  +  VWGAL  ACR+HGN  + ER    LLEL+PQ+SG YVLL+N+Y     ++
Sbjct: 455 NSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFD 514

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +  K+RK+M+ RG++  PG S +++NG ++EF + D SHP++++IY  L
Sbjct: 515 DVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKL 563



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 201/430 (46%), Gaps = 98/430 (22%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N D+  K+  ++ NPN F WN+ I+G LE  K+ +A+  Y +M+ +   RP+ FTYP LF
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID--ARPNKFTYPTLF 139

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS-------------------- 126
           K C+       G +I GHV+K G   D+++ +A I ++ S                    
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVC 199

Query: 127 ----------CGDLGLACNVFDESCVRNL------------------------------- 145
                     CG L  A  +F +  V+N+                               
Sbjct: 200 WNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDE 259

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           +SW+S+++G++ +G  +EA+ +F+ MQ E   P    +  +++AC+ +  ++ GR +H Y
Sbjct: 260 ISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           +  + + L   L  AL+DMY KCG+L+   E+F+ M  + + +   MI G A  G     
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHG----- 374

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                     R+++AL LF ++Q   +KP+ +T V  L+AC+  
Sbjct: 375 --------------------------RAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMPER-NSLTYT 382
           G +D G+ I + + +E + ++  L     +VD+  + G  ++A  + + MP + N+  + 
Sbjct: 409 GFVDKGLRIFQTM-REFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWG 467

Query: 383 AIIGGLALHG 392
           A++G   +HG
Sbjct: 468 ALLGACRIHG 477



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 144/298 (48%), Gaps = 14/298 (4%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
            +++  NL    K+   +   +  SW+  + G++  G+ +EA+++++QM R   TRP  F
Sbjct: 237 GLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE-TRPGRF 295

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
               +   C+++G    G  +  ++ +    +D  +  A++ ++  CG L +   VF+E 
Sbjct: 296 ILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM 355

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R + +WN++I G    G   +A+ LF  +Q  R++P+ +T++G+++ACA    ++ G 
Sbjct: 356 KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGL 415

Query: 201 EIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            I   + E  G+   +     ++D+  + G    AE++ +SM  K   +    ++G  + 
Sbjct: 416 RIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRI 475

Query: 260 -GFLDIARKIFDDLPE-------KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            G  D+A ++   L E       +YV+  N     Y +  R  +   +   M+  GIK
Sbjct: 476 HGNFDLAERVGKILLELEPQNSGRYVLLSNI----YAKVGRFDDVSKIRKLMKNRGIK 529


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 308/532 (57%), Gaps = 15/532 (2%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   +L + ++P+SFSW  AIR   + G+ +EA  LY QM R  G  P  F      K C
Sbjct: 57  YVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQR-WGLCPTTFALSSALKAC 115

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVD---MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           A +  R  G  I G V K GF      +YV  A++  +   GD+ +A  +FDE   RN+V
Sbjct: 116 ARIAYRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVV 175

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWNS++ G+++SG    A R+F ++     + D ++   M+S  A+  D+     +   +
Sbjct: 176 SWNSMLAGYLKSGDLVVAQRVFDEIP----QKDVISWNSMISGYARAGDMEKASSLFQQM 231

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            E          NA++  +V+ G ++SA   FD+M  K  VS  TMI GY+K G +D A 
Sbjct: 232 PERNFASW----NAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSAC 287

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQ 324
           ++FD +  K ++ +NA+I  Y Q  R  EAL LF+ M      ++PD +T    +SACSQ
Sbjct: 288 ELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQ 347

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           LG L  G WI  ++ +    ++  L TAL+D+YAKCG+I KA ++FH + +++ + YTA+
Sbjct: 348 LGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAM 407

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G  ++GKA+DAI  F EM+   + P+ ITF+G+L+A  H GLV+EG + F  M   + 
Sbjct: 408 ILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKK-YN 466

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           L P + HY  MVDL GR+G L+EA +LI+SMPM     VWGAL  ACRLH NV  GE AA
Sbjct: 467 LVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAA 526

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
               EL+P  +G   LL+N+Y     W++  ++RK+ +E+G  K PGCS +E
Sbjct: 527 QHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 188/409 (45%), Gaps = 61/409 (14%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S +L    ++   +   +  SWN  I G+   G M +A  L++QM         NF   
Sbjct: 186 KSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPER------NF--- 236

Query: 84  LLFKVCASLGLRFLGYEIFGHV--LKLGFDVDMYVHN----AVIHVFVSCGDLGLACNVF 137
                 AS      G+  FG +   +  FD     +N     +I  +  CGD+  AC +F
Sbjct: 237 ------ASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELF 290

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGMVSACAQLED 195
           D+   ++L+ +N++I  + ++  P EA+ LF +M      V+PDE+T+  ++SAC+QL D
Sbjct: 291 DQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGD 350

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L  G  I  Y+   G+ +   LA AL+D+Y KCG ++ A E+F  +  K +V+ T MI+G
Sbjct: 351 LRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILG 410

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
               G                               ++ +A+ LF EM    I P+++T 
Sbjct: 411 CGING-------------------------------KAIDAIKLFDEMVDAQIFPNSITF 439

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  L+A +  G +++G      ++K N   +V     +VD++ + G + +AL++   MP 
Sbjct: 440 IGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPM 499

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIG---VGLMPDEITFLGILS 421
           +    +  + G L L  +  + +  F E+       L PD   +  +LS
Sbjct: 500 Q---PHAGVWGALLLACRLHNNVE-FGEIAAQHCFELEPDTTGYRSLLS 544


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/543 (38%), Positives = 311/543 (57%), Gaps = 35/543 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G ++ G   +A+D+  +M R  G   D+ T   +  VCA LG       I  +
Sbjct: 240 SWNAMISGLIQNGNAAQALDVLDEM-RLEGINMDSVTVASILPVCAQLGDISTATLIHLY 298

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+K G + +++V NA+I+++   G+LG A  VF +  +R++VSWNS+I  + ++  P  A
Sbjct: 299 VIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTA 358

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMD 223
              F  MQL  +EPD +T++ + S  AQ  D    R +H +I   G L   V + NA+MD
Sbjct: 359 RGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMD 418

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY                               AK G +D A K+F+ +P K VV WN +
Sbjct: 419 MY-------------------------------AKLGVIDSAHKVFNLIPVKDVVSWNTL 447

Query: 284 IGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY Q   + EA+ ++  M+    IK +  T V  L+A + +GAL  G+ IH  + K N
Sbjct: 448 ISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTN 507

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            +L+V +GT L+D+Y KCG +  A+ +F+++P  +S+ + AII    +HG    A+  F 
Sbjct: 508 LHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFR 567

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM   G+ PD +TF+ +LSAC H GLVDEG+ +F  M   + + P LKHY CMVDLLGR+
Sbjct: 568 EMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRA 626

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G LE A   I+ MP+  D  +WGAL  ACR+HGN+ +G+ A+ +L E+D ++ G YVLL+
Sbjct: 627 GFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLS 686

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y +   WE   KVR +  ERG++KTPG SSIEVN  +  F   ++SHP+ ++IY  L 
Sbjct: 687 NIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELR 746

Query: 583 QLT 585
            LT
Sbjct: 747 ILT 749



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 165/590 (27%), Positives = 291/590 (49%), Gaps = 61/590 (10%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++G I   F   RL+   A     +L   T     +Q  + ++WN  I  ++  G  R
Sbjct: 99  LVVSGKIQSNFISIRLVNLYASLGDVSLSRGT--FDQIQRKDVYTWNSMISAYVRNGHFR 156

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+D + Q+L     + D +T+P + K C +L     G +I   V KLGF  D++V  ++
Sbjct: 157 EAIDCFYQLLLVTKFQADFYTFPPVLKACQTL---VDGRKIHCWVFKLGFQWDVFVAASL 213

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH++   G +G+A ++FD+   R++ SWN++I+G +++G   +A+ +  +M+LE +  D 
Sbjct: 214 IHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDS 273

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT+  ++  CAQL D++    IH Y+ + GL   + ++NAL++MY K G L  A+++F  
Sbjct: 274 VTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQ 333

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + VVS                               WN+II  Y Q      A   F
Sbjct: 334 MFLRDVVS-------------------------------WNSIIAAYEQNDDPVTARGFF 362

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN-VVLGTALVDMYAK 359
            +MQ  G++PD +T V   S  +Q     +   +H FI +  + +  VV+G A++DMYAK
Sbjct: 363 FKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAK 422

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP-DEITFLG 418
            G I  A +VF+ +P ++ +++  +I G   +G A +AI  +  M     +  ++ T++ 
Sbjct: 423 LGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVS 482

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           IL+A  H G + +G +    +     L   +   +C++DL G+ G L +A  L   +P  
Sbjct: 483 ILAAYAHVGALQQGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE 541

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI------YVLLANMYRDSNMWE 532
           +  V W A+     +HG+   GE+A     E+  QD G+      ++ L +    S + +
Sbjct: 542 SS-VPWNAIISCHGIHGH---GEKALKLFREM--QDEGVKPDHVTFISLLSACSHSGLVD 595

Query: 533 EAGKVRKMMEERGVE---KTPGCSSIEVNG------LLYEFIVRDKSHPE 573
           E      +M+E G++   K  GC  +++ G      + Y+FI     HP+
Sbjct: 596 EGKWFFHLMQEYGIKPSLKHYGC-MVDLLGRAGFLEMAYDFIKDMPLHPD 644


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/498 (38%), Positives = 298/498 (59%), Gaps = 7/498 (1%)

Query: 85  LFKVCASLG-LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC--GDLGLACNVFDESC 141
           L + C+++G L+    +I G +LK G        + ++  + S    +L  A  VFD   
Sbjct: 17  LLERCSNIGELK----QIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRIS 72

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
             N V WN++I  +  S  P EA+ L+  M    +  +  T   ++ AC+ L  L    +
Sbjct: 73  SPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQ 132

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           IH  I + G    V   N+L+ +Y   G ++SA  +FD + ++ +VS  TMI GY K G 
Sbjct: 133 IHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGN 192

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +++A KIF  +PEK V+ W ++I G+V+    KEAL L  +M   GIKPD +T    LSA
Sbjct: 193 VEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSA 252

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ LGAL+ G WIH +I K    ++ VLG AL+DMY KCG + KAL VF ++ ++   T+
Sbjct: 253 CAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTW 312

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           TAIIGG A+HGK  +A+ +F++M   G+ P   TF  +L+AC H GLV+EG+  F  MS+
Sbjct: 313 TAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMST 372

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + + P ++HY CMVDLLGR+G L+EA++ + SMP+  +  +WG+L  AC LH ++ +G+
Sbjct: 373 FYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGK 432

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
                L+ELDP+  G Y+ LA+++  +  W+EA +VR  ++ +G+   PGCS+I +NG+ 
Sbjct: 433 EIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVA 492

Query: 562 YEFIVRDKSHPELEQIYD 579
           +EF    + HP + ++YD
Sbjct: 493 HEFFAGAEPHPHVREMYD 510



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 199/422 (47%), Gaps = 69/422 (16%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G I H    SRL+   A  E  NL Y   +   + +PN+  WN  IR +  +    EA+ 
Sbjct: 38  GTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALL 97

Query: 65  LYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           LY QML +  + P N +T+P L K C++L      ++I   ++K GF  ++Y  N+++ V
Sbjct: 98  LYHQMLHH--SIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRV 155

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLIN------------------------------ 153
           +   G +  A  +FD    R++VSWN++I+                              
Sbjct: 156 YAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMI 215

Query: 154 -GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            GFVR+G  +EA+ L + M +  ++PD++T+   +SACA L  L  G+ IH YI ++ + 
Sbjct: 216 VGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIK 275

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           +   L  AL+DMYVKCG+++ A  +F  +  K V +                        
Sbjct: 276 IDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYT------------------------ 311

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  W AIIGG+    +  EAL  F +MQ  GIKP + T    L+ACS  G +++G 
Sbjct: 312 -------WTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGK 364

Query: 333 WIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLA 389
            +   +    +N+  V+     +VD+  + G + +A +    MP + N+  + +++    
Sbjct: 365 SLFESMST-FYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACH 423

Query: 390 LH 391
           LH
Sbjct: 424 LH 425


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/411 (43%), Positives = 271/411 (65%)

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V+P++ T+  +V ACA +  L  G++ H YI + G    V +  AL+ MY +CG LE A 
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD M  ++  +   MI G+A+   +  A K+F ++ E+ VV W A+I GY Q     E
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           +L +F++M+ TG+K D       LSAC+ L AL+ G   H ++ +  F L++V+G+ALVD
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MYAK G++  A QVF +MP+RN +++ +II G A HG+  DA+  F +M+  G+ P+EI+
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+LSAC H GLV+EGR YF  M+  + + P + HY+CM+DLLGR+G L+EAE  I  M
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P+  DV VWGAL  ACR+HGN  + +R A  LL ++ Q +GIYVLL+N+Y  +  W++A 
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           KVRK+M++RGV K PG S IEV  +++ F+  + SHP+L++I++ L  L+R
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSR 416



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 180/380 (47%), Gaps = 71/380 (18%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G +P+ FT   + K CAS+     G +   +++K+GF+ D+ V  A++H++  CG L  A
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 134 CNVFD-------------------------------ESCVRNLVSWNSLINGFVRSGFPR 162
            +VFD                               E   R++VSW ++I G+ ++G+  
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           E++ +F  M+   ++ D   M  ++SACA L  L LGR+ H Y+ +SG  L + + +AL+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY K G +E A ++FD M  +  VS                               WN+
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVS-------------------------------WNS 213

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           II G  Q  R  +A+ LF +M   GIKP+ ++ V  LSACS  G +++G      +  +N
Sbjct: 214 IITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLM-TQN 272

Query: 343 FNL--NVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAIS 399
           + +  +V   T ++D+  + G + +A    + MP E +   + A++G   +HG      +
Sbjct: 273 YGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGN-----T 327

Query: 400 YFSEMIGVGLMPDEITFLGI 419
             ++ I   L+  E+   GI
Sbjct: 328 ELAKRIAEHLLGMEVQIAGI 347



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 134/252 (53%), Gaps = 3/252 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++++++    K+ + +   +  SW   I G+ + G   E+++++ QM R  G + D F  
Sbjct: 87  AQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQM-RKTGMKSDRFIM 145

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA L    LG +   +V++ GF +D+ V +A++ ++   G +  AC VFD+   
Sbjct: 146 GSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ 205

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           RN VSWNS+I G  + G   +A+ LF  M    ++P+E++ +G++SAC+    +N GR  
Sbjct: 206 RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGY 265

Query: 203 HWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-G 260
              ++++ G+   V     ++D+  + G L+ AE   + M  +  VS    ++G  +  G
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325

Query: 261 FLDIARKIFDDL 272
             ++A++I + L
Sbjct: 326 NTELAKRIAEHL 337



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 35/225 (15%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG- 361
           M   G+KP+  T    + AC+ + +L+ G   H +I K  F  +VV+ TALV MYA+CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 362 ------------------------------NIAKALQVFHEMPERNSLTYTAIIGGLALH 391
                                         ++ KAL++F+EM ER+ +++TA+I G A +
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLK 450
           G   ++++ F++M   G+  D      +LSAC     ++ GR++ A  + S F L   + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             S +VD+  +SG +E+A Q+   MP   + V W ++   C  HG
Sbjct: 181 --SALVDMYAKSGSMEDACQVFDKMPQRNE-VSWNSIITGCAQHG 222


>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 765

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/443 (41%), Positives = 277/443 (62%), Gaps = 2/443 (0%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL  H +  S+L +  A+S   +LDY  K+   +  PN ++WN  IR F  + +   ++
Sbjct: 57  SGLFFHPYNASKLFSVAALSSFSSLDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSL 116

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +ML +    P+ FT+P + K  A +        I G  +K     D+++ N++IH 
Sbjct: 117 LIFIRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHC 176

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           + SCGDL  A +VF +   +++VSWNS+I GFV  G P +A+ LF+ M+ E V P++VTM
Sbjct: 177 YASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTM 236

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           +G++SACA+  DL  GR +  YI  +G+ + + ++NA++DMYVK G LE A  +FD M  
Sbjct: 237 VGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEE 296

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           K + S TTMI GYAK    D AR +FD +P + +  WN +I  Y Q  + KEALA+FHE+
Sbjct: 297 KDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHEL 356

Query: 304 Q-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           Q +   KPD VT V  LSAC+QLGA+D G WIH +I+K++  LN  L T+L+DMY+KCG 
Sbjct: 357 QLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGE 416

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           + KAL +F+ +  R+   ++A+I GLA+HG+   AI  F EM    + P+ +TF  +L A
Sbjct: 417 VEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCA 476

Query: 423 CCHGGLVDEGRKYFAQM-SSIFR 444
           C H GLV+EGR +F QM SS F+
Sbjct: 477 CSHTGLVNEGRMFFNQMESSTFK 499



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 197/447 (44%), Gaps = 78/447 (17%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHV--FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           E+   +L+ G     Y  + +  V    S   L  A  VF+E    NL +WN+LI  F  
Sbjct: 49  ELHATILRSGLFFHPYNASKLFSVAALSSFSSLDYARKVFEEISQPNLYTWNTLIRAFAS 108

Query: 158 SGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           S  P  ++ +F  M  +  + P++ T   ++ A A +  L   + IH    ++ L   + 
Sbjct: 109 SPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLF 168

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N+L+  Y  CG L+S                               A  +F  + EK 
Sbjct: 169 ILNSLIHCYASCGDLDS-------------------------------AYSVFVKIEEKD 197

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV WN++I G+V      +AL LF  M+A  ++P+ VT V  LSAC++   L+ G  +  
Sbjct: 198 VVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCH 257

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH----- 391
           +IE+   N+N+ +  A++DMY K G++  A ++F +M E++  ++T +I G A       
Sbjct: 258 YIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDA 317

Query: 392 --------------------------GKALDAISYFSEM-IGVGLMPDEITFLGILSACC 424
                                     GK  +A++ F E+ +     PDE+T +  LSAC 
Sbjct: 318 ARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACA 377

Query: 425 HGGLVDEG---RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
             G +D G     Y  +     +L+  L   + ++D+  + G +E+A  +  S+    DV
Sbjct: 378 QLGAIDIGGWIHVYIKKQD--IKLNCHLT--TSLIDMYSKCGEVEKALDIFYSVDRR-DV 432

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLL 508
            VW A+     +HG      RAA+ L 
Sbjct: 433 FVWSAMIAGLAMHGR----GRAAIDLF 455


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 319/563 (56%), Gaps = 14/563 (2%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A + + +LD        +   N +SW   I  F + G++ +A+ LY+++       P+  
Sbjct: 405 AYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV-------PEQT 457

Query: 81  --TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
             T   +    A +G       IF  +L    + ++   NA+I  +   G L  A ++F 
Sbjct: 458 VATKTAMMTAYAQVGRIQKARLIFDEIL----NPNVVAWNAIIAGYTQNGMLKEAKDLFQ 513

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           +  V+N  SW ++I GFV++   REA+ L  ++      P + +    +SACA + D+ +
Sbjct: 514 KMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEI 573

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           GR IH    ++G      + N L+ MY KCG +E    +F ++  K  VS  ++I G ++
Sbjct: 574 GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSE 633

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
              LD AR +F+ +P++ VV W AII  YVQA   + AL LF +M A GIKP+ +T    
Sbjct: 634 NYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSL 693

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           LSAC  LGA+  G   H  I K  F+  + +G +L+ MY KCG       VF EMPE + 
Sbjct: 694 LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDL 752

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +T+ A++ G A +G   +AI  F +M   G++PD+++FLG+L AC H GLVDEG  +F  
Sbjct: 753 ITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNS 812

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+  + + P + HY+CMVDLLGR+G L EAE LI +MP+  D V+W AL  ACR+H NV 
Sbjct: 813 MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVE 872

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           +G+R A +L ++    S  YVLL+N++    MW++  ++RK+M+++G+ K PG S I+V 
Sbjct: 873 LGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVK 932

Query: 559 GLLYEFIVRDKSHPELEQIYDCL 581
             L+ F+  D++H ++E+IY  L
Sbjct: 933 NKLHCFVTGDRTHDQIEEIYSAL 955



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 227/502 (45%), Gaps = 84/502 (16%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG-LRFLGYE 100
           NS SW V I G++      EA D++ +M R    RPD   + ++      L  L  +G  
Sbjct: 325 NSVSWMVMISGYVHISDYWEAWDVFVKMCRTVA-RPDQSIFVVVLSAITGLDDLELIG-S 382

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           +    +K G++ D+ V +A+++ +   G L LA + F+    RN  SW ++I  F + G 
Sbjct: 383 LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGR 442

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             +AI+L+     ERV P++                                 TV    A
Sbjct: 443 LDDAIQLY-----ERV-PEQ---------------------------------TVATKTA 463

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           +M  Y + G+++ A  IFD ++N  VV+   +I GY + G L  A+ +F  +P K    W
Sbjct: 464 MMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASW 523

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I G+VQ + S+EAL L  E+  +G  P   +    LSAC+ +G ++ G  IH    K
Sbjct: 524 AAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIK 583

Query: 341 ENFNLNVVLGTALVDMYAKCGNIA-------------------------------KALQV 369
                N  +   L+ MYAKCGN+                                 A  V
Sbjct: 584 TGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVV 643

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F +MP+R+ +++TAII      G    A+  F +M+  G+ P+++T   +LSAC + G +
Sbjct: 644 FEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAI 703

Query: 430 DEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             G ++ A    IF+L      +  + ++ +  + G  E+   +   MP   D++ W A+
Sbjct: 704 KLGEQFHAL---IFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAV 758

Query: 488 FFACRLHGNVSIGERAAMKLLE 509
              C  +G   +G + A+K+ E
Sbjct: 759 LVGCAQNG---LG-KEAIKIFE 776



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 185/372 (49%), Gaps = 22/372 (5%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N  I      G +  A  VF+E   R++VSWNS+ING+ ++G   EA  LF     + + 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR 234

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
              + + G      ++E+    RE+     ES     V   NA++  YV+ G L++A ++
Sbjct: 235 TWTILLTGYAKE-GRIEE---AREVF----ESMTERNVVSWNAMISGYVQNGDLKNARKL 286

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M  K V S  +++ GY     +  AR++FD +PE+  V W  +I GYV      EA 
Sbjct: 287 FDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 346

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F +M  T  +PD    V  LSA + L  L+    +     K  +  +VV+G+A+++ Y
Sbjct: 347 DVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAY 406

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI--T 415
            + G++  A+  F  MPERN  ++T +I   A  G+  DAI  +        +P++   T
Sbjct: 407 TRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER------VPEQTVAT 460

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
              +++A    G + + R  F ++     L+P +  ++ ++    ++G+L+EA+ L + M
Sbjct: 461 KTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515

Query: 476 PMAADVVVWGAL 487
           P+  +   W A+
Sbjct: 516 PV-KNSASWAAM 526



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 54/215 (25%)

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
            C T I    + G ++ AR++F+++ ++ VV WN++I GY Q  +  EA  LF       
Sbjct: 173 QCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF------- 225

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
              DA                        F+ K     N+   T L+  YAK G I +A 
Sbjct: 226 ---DA------------------------FVGK-----NIRTWTILLTGYAKEGRIEEAR 253

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE--ITFLGILSACCH 425
           +VF  M ERN +++ A+I G   +G   +A   F E      MP++   ++  +++  CH
Sbjct: 254 EVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDE------MPEKNVASWNSVVTGYCH 307

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
              + E R+ F QM       P+    S MV + G
Sbjct: 308 CYRMSEARELFDQM-------PERNSVSWMVMISG 335


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 325/551 (58%), Gaps = 9/551 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +I  N  + + F WN  I+ +    +   A+ L+  ML NG    D F++ L+ K CA +
Sbjct: 80  RIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFC-VDKFSFSLILKACARV 138

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L   G +I G ++KL    ++++ N +I +++ CGD+  A  VFD   +++ VS+NS+I
Sbjct: 139 CLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMI 198

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGL 211
           +G+V+SG    A  LF  M LE  + + ++   M+   AQ +D + L  E+   + E  L
Sbjct: 199 DGYVKSGTIDLARELFDSMPLE--DKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDL 256

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
                  N ++  + KCG++E A  +F+ M  + V+S + MI GYAK G + +AR +FD+
Sbjct: 257 VSW----NTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDE 312

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDD 330
           +P+K VV +N I+ GY Q     EAL +FHEMQ  + + PD  T V  LSA SQLG ++ 
Sbjct: 313 MPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEK 372

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              +H +  +   ++   +  AL+DMY+KCG+I  A+ +F  + ++    + A+I G+A 
Sbjct: 373 AASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMAR 432

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           +G    A     EM  + + PD ITF+G+L+AC H GLV EG   F  M  + +L PKL+
Sbjct: 433 NGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQ 492

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CMVD+LG++GL+E A + I  MP+  + ++W  L  AC+ H N +IGE  A  L+ +
Sbjct: 493 HYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTM 552

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           D  +S  YVLL+N+Y    +W  A KVR MM+++ + K PGCS IE+ G+++EF+VRDKS
Sbjct: 553 DSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKS 612

Query: 571 HPELEQIYDCL 581
           HP + +IY  L
Sbjct: 613 HPYVSEIYSVL 623


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 315/559 (56%), Gaps = 34/559 (6%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C   LF+ + + +   WN  I  + ++GK  EA+  Y  M+R  G  PD+ T       C
Sbjct: 159 CAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALR-YFGMMRRFGFEPDSVTITTAISSC 217

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           A L     G EI   ++  GF +D +V  A++ ++  CG L +A  VF++   + +V+WN
Sbjct: 218 ARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWN 277

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           S+ING+   G     I+LF+ M  E V+P   T+   + AC+Q   L  G+ +H YI  +
Sbjct: 278 SMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRN 337

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            +   + L ++LMD+Y KCGK+ESAE IF  M                            
Sbjct: 338 RIQPDIFLNSSLMDLYFKCGKVESAETIFKLM---------------------------- 369

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
              P+   V WN +I GYV   +  +AL LF EM  + ++PDA+T    L+ACSQL AL+
Sbjct: 370 ---PKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALE 426

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  IH  I + N   N V+  AL+DMYAKCG + +A  VF  +PER+ +++T++I    
Sbjct: 427 KGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYG 486

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            HG+  +A+  F+EM+   + PD +TFL ILSAC H GLVD+G  +F QM +++ + P++
Sbjct: 487 SHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRI 546

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           +HYSC++ LLGR+G L EA ++++S P ++ D  +   LF ACRLH N+ +G   A  L+
Sbjct: 547 EHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLI 606

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           + DP DS  Y++L+NMY     W+E   VR  M++ G++K PGCS IE+N  +  F V D
Sbjct: 607 DKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVED 666

Query: 569 KSHPELEQIYDCLVQLTRH 587
            SH  LE I + L  LT H
Sbjct: 667 NSHYHLEGIGNILSYLTSH 685



 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 236/471 (50%), Gaps = 34/471 (7%)

Query: 28  LDYCTKILFNVQNPNSFSW-NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            DY   +   ++NP   S  N  + G+       EA+ L+ +++     +PD++TYP + 
Sbjct: 54  FDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVL 113

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C  L    LG  I   ++K G  VD+ V ++++ ++  C +   A  +FDE   +++ 
Sbjct: 114 KACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVA 173

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
            WN++I+ + +SG   EA+R F  M+    EPD VT+   +S+CA+L DL+ GREIH  +
Sbjct: 174 CWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKEL 233

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
             SG  +   ++ AL+DMY KCG+LE A E+F+ M NKTVV+                  
Sbjct: 234 VNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVA------------------ 275

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                        WN++I GY         + LF  M + G+KP   T    L ACSQ  
Sbjct: 276 -------------WNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSA 322

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            L +G ++H +I +     ++ L ++L+D+Y KCG +  A  +F  MP+  ++++  +I 
Sbjct: 323 QLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMIS 382

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G    GK  DA+  F EM    + PD ITF  +L+AC     +++GR+    +     L 
Sbjct: 383 GYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGRE-IHNLIVERNLG 441

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
                   ++D+  + G +EEA  + + +P   D+V W ++  A   HG V
Sbjct: 442 NNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRV 491



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 200/429 (46%), Gaps = 48/429 (11%)

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
           PLL     S  L+  G  +   V+ LG   D+YV   +I ++VSC     A NVFD   +
Sbjct: 8   PLLRASVNSKSLK-QGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFD--VI 64

Query: 143 RN---LVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
            N   +   N L+ G+ R+    EA+ LF + M    ++PD  T   ++ AC  L  + L
Sbjct: 65  ENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVL 124

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+ IH  + + GL + + + ++L+ MY KC + E A ++FD M +K V            
Sbjct: 125 GQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVAC---------- 174

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
                                WN +I  Y Q+ + +EAL  F  M+  G +PD+VT    
Sbjct: 175 ---------------------WNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTA 213

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           +S+C++L  LD G  IH+ +    F ++  +  ALVDMY KCG +  A++VF +MP +  
Sbjct: 214 ISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTV 273

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + + ++I G    G  +  I  F  M   G+ P   T    L AC     + EG K+   
Sbjct: 274 VAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEG-KFVHG 332

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAADVVVWGALFF 489
                R+ P +   S ++DL  + G +E AE + + MP         M +  V  G LF 
Sbjct: 333 YIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFD 392

Query: 490 ACRLHGNVS 498
           A RL G +S
Sbjct: 393 ALRLFGEMS 401


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/629 (34%), Positives = 334/629 (53%), Gaps = 71/629 (11%)

Query: 27   NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +L    ++ + +   +  SWN  I G+       EA+ LYKQM ++ G +P   T+  L 
Sbjct: 380  DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLL 438

Query: 87   KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
              CA+      G  I   +L+ G   + ++ NA+++++  CG L  A NVF+ +  R+++
Sbjct: 439  SACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVI 498

Query: 147  SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
            SWNS+I G  + G    A +LF++MQ E +EPD +T   ++S C   E L LG++IH  I
Sbjct: 499  SWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558

Query: 207  SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG------ 260
            +ESGL L V L NAL++MY++CG L+ A  +F S+ ++ V+S T MI G A  G      
Sbjct: 559  TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAI 618

Query: 261  --FLDIARKIFDDLPE------------------KYVVPW-------------NAIIGGY 287
              F  +  + F  +                    K V+ +             NA+I  Y
Sbjct: 619  ELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAY 678

Query: 288  VQAKRSKEALALFHEM-------------------------------QATGIKPDAVTTV 316
             ++    +A  +F +M                               Q   + P+  + V
Sbjct: 679  SKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFV 738

Query: 317  HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
              L+ACS   AL++G  +H  I K     +V +G AL+ MYAKCG+  +A +VF  + E+
Sbjct: 739  SLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEK 798

Query: 377  NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
            N +T+ A+I   A HG A  A+ +F+ M   G+ PD  TF  ILSAC H GLV EG + F
Sbjct: 799  NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIF 858

Query: 437  AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            + M S + + P ++HY C+V LLGR+   +EAE LI  MP   D  VW  L  ACR+HGN
Sbjct: 859  SSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 918

Query: 497  VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
            +++ E AA   L+L+ ++  +Y+LL+N+Y  +  W++  K+R++ME RG+ K PG S IE
Sbjct: 919  IALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 978

Query: 557  VNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            V+ +++EFI  D+SHPE  +IY  L +L+
Sbjct: 979  VDNIIHEFIAADRSHPETAEIYAELKRLS 1007



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/543 (29%), Positives = 260/543 (47%), Gaps = 48/543 (8%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +N  I    + G   EA + Y +M R+ G   +  TY  +   C++      G  I  H+
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI 356

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            + G   D+ + NA+I ++  CGDL  A  +F     R+L+SWN++I G+ R     EA+
Sbjct: 357 SEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAM 416

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
           RL++ MQ E V+P  VT + ++SACA       G+ IH  I  SG+     LANALM+MY
Sbjct: 417 RLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMY 476

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            +CG L  A+ +F+    + V+S  +MI G+A+ G  + A K+F                
Sbjct: 477 RRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLF---------------- 520

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                           EMQ   ++PD +T    LS C    AL+ G  IH  I +    L
Sbjct: 521 ---------------QEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +V LG AL++MY +CG++  A  VFH +  R+ +++TA+IGG A  G+ + AI  F +M 
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKHYSCMVDLLGRSGL 464
             G  P + TF  IL  C     +DEG+K  A  ++S + L   +   + ++    +SG 
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG--NALISAYSKSGS 683

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD----SGIYVL 520
           + +A ++   MP + D+V W  +      +G   +G+ A     ++  QD       +V 
Sbjct: 684 MTDAREVFDKMP-SRDIVSWNKIIAGYAQNG---LGQTAVEFAYQMQEQDVVPNKFSFVS 739

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L N     +  EE  +V   + +R ++       + V   L     +  S  E ++++D 
Sbjct: 740 LLNACSSFSALEEGKRVHAEIVKRKLQ-----GDVRVGAALISMYAKCGSQGEAQEVFDN 794

Query: 581 LVQ 583
           +++
Sbjct: 795 IIE 797



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 232/475 (48%), Gaps = 40/475 (8%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
            SWN  I  + + G  ++A  L+++M +N G  P+  TY  +   C S      G +I  
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEM-QNAGFIPNKITYISILTACYSPAELENGKKIHS 152

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
            ++K G+  D  V N+++ ++  CGDL  A  VF     R++VS+N+++  + +  + +E
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKE 212

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
            + LF  M  E + PD+VT I ++ A      L+ G+ IH    E GL   + +  AL+ 
Sbjct: 213 CLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVT 272

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           M V+CG ++SA                               ++ F    ++ VV +NA+
Sbjct: 273 MCVRCGDVDSA-------------------------------KQAFKGTADRDVVVYNAL 301

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I    Q   + EA   ++ M++ G+  +  T +  L+ACS   AL+ G  IH  I ++  
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           + +V +G AL+ MYA+CG++ KA ++F+ MP+R+ +++ AII G A      +A+  + +
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGR 461
           M   G+ P  +TFL +LSAC +     +G+        I R   K   +  + ++++  R
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIH---EDILRSGIKSNGHLANALMNMYRR 478

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQD 514
            G L EA+ +      A DV+ W ++      HG+     +    M+  EL+P +
Sbjct: 479 CGSLMEAQNVFEGT-QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 33/414 (7%)

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
           T  +  TY  L + C    L      I   +++     D+++ N +I+++V C  +  A 
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VF E   R+++SWNSLI+ + + GF ++A +LF +MQ     P+++T I +++AC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           +L  G++IH  I ++G      + N+L+ MY KCG L  A                    
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRA-------------------- 182

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                      R++F  +  + VV +N ++G Y Q    KE L LF +M + GI PD VT
Sbjct: 183 -----------RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVT 231

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            ++ L A +    LD+G  IH+   +E  N ++ +GTALV M  +CG++  A Q F    
Sbjct: 232 YINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA 291

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +R+ + Y A+I  LA HG  ++A   +  M   G+  +  T+L IL+AC     ++ G+ 
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
             + +S     S  ++  + ++ +  R G L +A +L  +MP   D++ W A+ 
Sbjct: 352 IHSHISEDGH-SSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAII 403



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 156/325 (48%), Gaps = 33/325 (10%)

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           Q    E +  T + ++  C +   L   + IH  + E+ +   + L+N L++MYVKC   
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKC--- 75

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
                + D                         A ++F ++P + V+ WN++I  Y Q  
Sbjct: 76  ---RSVLD-------------------------AHQVFKEMPRRDVISWNSLISCYAQQG 107

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             K+A  LF EMQ  G  P+ +T +  L+AC     L++G  IH  I K  +  +  +  
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN 167

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           +L+ MY KCG++ +A QVF  +  R+ ++Y  ++G  A      + +  F +M   G+ P
Sbjct: 168 SLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISP 227

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D++T++ +L A     ++DEG++   +++    L+  ++  + +V +  R G ++ A+Q 
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA 286

Query: 472 IRSMPMAADVVVWGALFFACRLHGN 496
            +      DVVV+ AL  A   HG+
Sbjct: 287 FKGTA-DRDVVVYNALIAALAQHGH 310


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/582 (36%), Positives = 315/582 (54%), Gaps = 43/582 (7%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL  + F     I  C  S  K + +  K+   +  PN+ +WN   RG+L+ G  R+ V 
Sbjct: 39  GLEHNDFVAPNFITTC--SRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVV 96

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ ++ R  G  P+ FT+P++ K C  L     G E+     K GF  + +V  ++I ++
Sbjct: 97  LFGELNRIAGM-PNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMY 155

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
              G +  A  VF E   RN+V W ++ING++  G      RLF D+  ER    +V M 
Sbjct: 156 SKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLF-DLAPER----DVVM- 209

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
                              W +  SG              Y++   + +A E+FD M N+
Sbjct: 210 -------------------WSVLISG--------------YIESKNMAAARELFDKMPNR 236

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             +S   M+ GYA  G +++  K+FD++PE+ V  WN +IGGYV+     E L  F  M 
Sbjct: 237 DTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRML 296

Query: 305 ATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
             G + P+  T V  LSACS+LGALD G W+H + E   +  N+ +G  L+DMYAKCG I
Sbjct: 297 VEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVI 356

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             A+ VF+ +  ++ +++  II GLA+HG A DA+  F  M   G  PD +TF+GILSAC
Sbjct: 357 ENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSAC 416

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLV +G  YF  M   + + P+++HY CMVDLLGR+GLL++A   IR MP+  D V+
Sbjct: 417 THMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVI 476

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W AL  ACRL+ NV I E A  +L+EL+P +   +V+++N+Y+D    E+  +++  M +
Sbjct: 477 WAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRD 536

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            G  K PGCS IE N  + EF   D+ H E E IY  L  LT
Sbjct: 537 TGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLT 578


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 331/600 (55%), Gaps = 37/600 (6%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
             A +++ NLD   ++   +  P+S SW   I G+   G  + AV  + +M+ + G  P 
Sbjct: 86  LSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV-SSGISPT 144

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD--------- 129
            FT+  +   CA+     +G ++   V+KLG    + V N++++++  CGD         
Sbjct: 145 QFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFD 204

Query: 130 ----------------------LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL 167
                                   LA  +FD+    ++VSWNS+I G+   G+   A+  
Sbjct: 205 RMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALET 264

Query: 168 FRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           F  M +   ++PD+ T+  ++SACA  E L LG++IH +I  + + +   + NAL+ MY 
Sbjct: 265 FSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324

Query: 227 KCGKLESAEEIFD--SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           K G +E A  I +     +  V++ T+++ GY K G +D AR IFD L  + VV W A+I
Sbjct: 325 KSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q     +AL LF  M   G KP+  T    LS  S L +LD G  +H    +    
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV 444

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVF-HEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
            +V +G AL+ MY++ G+I  A ++F H    R++LT+T++I  LA HG   +AI  F +
Sbjct: 445 SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEK 504

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+ + L PD IT++G+LSAC H GLV++G+ YF  M ++  + P   HY+CM+DLLGR+G
Sbjct: 505 MLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAG 564

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           LLEEA   IR+MP+  DVV WG+L  +CR+H  V + + AA KLL +DP +SG Y+ LAN
Sbjct: 565 LLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALAN 624

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
                  WE+A KVRK M+++ V+K  G S +++   ++ F V D  HP+ + IY C++ 
Sbjct: 625 TLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIY-CMIS 683



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 209/453 (46%), Gaps = 51/453 (11%)

Query: 93  GLRFLGYEIFGHVL----KLGFDVD------------MYVHNAVIHVFVSCGDLGLACNV 136
           GLR+LG  +  ++L    K G   D             +  N ++      G+L  A  V
Sbjct: 42  GLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRV 101

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           FDE    + VSW ++I G+   G  + A+  F  M    + P + T   ++++CA  + L
Sbjct: 102 FDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQAL 161

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           ++G+++H ++ + G +  VP+AN+L++MY KCG    A+ +FD M  K   +  TMI  +
Sbjct: 162 DVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMH 221

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTT 315
            +F   D+A  +FD + +  +V WN+II GY        AL  F  M +++ +KPD  T 
Sbjct: 222 MQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTL 281

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC--------------- 360
              LSAC+   +L  G  IH  I + + ++   +G AL+ MYAK                
Sbjct: 282 GSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGT 341

Query: 361 ------------------GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
                             G+I  A  +F  +  R+ + +TA+I G A +G   DA+  F 
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFR 401

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
            MI  G  P+  T   +LS       +D G++  A    +  +S  +   + ++ +  RS
Sbjct: 402 LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVS-SVSVGNALITMYSRS 460

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           G +++A ++   +    D + W ++  +   HG
Sbjct: 461 GSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 38/324 (11%)

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLT-LTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           + ++ +  +  D  +GR IH  I + GL  L V L N L+++YVK G    A  +FD M 
Sbjct: 16  VHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMP 75

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            KT  S  T++  +AK G LD AR++FD++P+   V W  +I GY      K A+  F  
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M ++GI P   T  + L++C+   ALD G  +H F+ K   +  V +  +L++MYAKCG+
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 363 --IAK-----------------------------ALQVFHEMPERNSLTYTAIIGGLALH 391
             +AK                             AL +F +M + + +++ +II G    
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 392 GKALDAISYFSEMI-GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           G  + A+  FS M+    L PD+ T   +LSAC +   +  G++  A    I R    + 
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAH---IVRADVDIA 312

Query: 451 HY--SCMVDLLGRSGLLEEAEQLI 472
               + ++ +  +SG +E A +++
Sbjct: 313 GAVGNALISMYAKSGAVEVAHRIV 336


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/554 (35%), Positives = 322/554 (58%), Gaps = 33/554 (5%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            + LF+ +Q  +  +W V I G+ E GK  E++ L+++M R  G  PD      +   CA
Sbjct: 84  ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM-REEGVVPDKVAMVTVVFACA 142

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            LG       I  ++ +  F +D+ +  A+I ++  CG +  A  +FD    +N++SW++
Sbjct: 143 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 202

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I  +   G  R+A+ LFR M    + PD++T+  ++ AC+ L++L +GR IH  + + G
Sbjct: 203 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFG 262

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L L   +  AL+DMY KC ++E A                               R +FD
Sbjct: 263 LDLDHFVCAALVDMYGKCREIEDA-------------------------------RFLFD 291

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            +PE+ +V W  +IGGY +   + E+L LF +M+  G+ PD V  V  + AC++LGA+  
Sbjct: 292 KMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHK 351

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              I  +I+++ F L+V+LGTA++DM+AKCG +  A ++F  M E+N ++++A+I     
Sbjct: 352 ARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 411

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG+   A+  F  M+  G++P++IT + +L AC H GLV+EG ++F+ M   + +   +K
Sbjct: 412 HGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVK 471

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY+C+VDLLGR+G L+EA +LI SM +  D  +WGA   ACR H +V + E+AA  LLEL
Sbjct: 472 HYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLEL 531

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
            PQ+ G Y+LL+N+Y ++  WE+  K R +M +R ++K PG + IEV+   ++F V D +
Sbjct: 532 QPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTT 591

Query: 571 HPELEQIYDCLVQL 584
           HP  ++IY+ L  L
Sbjct: 592 HPRSKEIYEMLKSL 605



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 175/339 (51%), Gaps = 37/339 (10%)

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           ++ GF + G        FR++      PD  T+  ++ AC  L++L +GR IH  + + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L L   +  AL+DMYVKC ++E A                               R +FD
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDA-------------------------------RFLFD 89

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            + E+ +V W  +IGGY +  ++ E+L LF +M+  G+ PD V  V  + AC++LGA+  
Sbjct: 90  KMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              I  +I+++ F L+V+LGTA++DMYAKCG +  A ++F  M E+N ++++A+I     
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG+   A+  F  M+  G++PD+IT   +L AC     +  GR        +++    L 
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH---HIVYKFGLDLD 266

Query: 451 HYSC--MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           H+ C  +VD+ G+   +E+A  L   MP   D+V W  +
Sbjct: 267 HFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVM 304



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 184/384 (47%), Gaps = 39/384 (10%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           G A   + A C   ES       +I   ++  N  SW+  I  +   G+ R+A+DL++ M
Sbjct: 169 GTAMIDMYAKCGCVESAR-----EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM 223

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           L + G  PD  T   L   C+ L    +G  I   V K G D+D +V  A++ ++  C +
Sbjct: 224 L-SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 282

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +  A  +FD+   R+LV+W  +I G+   G   E++ LF  M+ E V PD+V M+ +V A
Sbjct: 283 IEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 342

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           CA+L  ++  R I  YI      L V L  A++DM+ KCG +ESA EIFD M  K V+S 
Sbjct: 343 CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW 402

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           + MI  Y   G                               + ++AL LF  M  +GI 
Sbjct: 403 SAMIAAYGYHG-------------------------------QGRKALDLFPMMLRSGIL 431

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           P+ +T V  L ACS  G +++G+     + E  +   +V   T +VD+  + G + +AL+
Sbjct: 432 PNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALK 491

Query: 369 VFHEMP-ERNSLTYTAIIGGLALH 391
           +   M  E++   + A +G    H
Sbjct: 492 LIESMTVEKDEGLWGAFLGACRTH 515



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           ++GG+ +          F E+   G +PD  T    + AC  L  L  G  IH  + K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            +L+  +  ALVDMY KC  I  A  +F +M ER+ +T+T +IGG A  GKA +++  F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHYSCMVDLL 459
           +M   G++PD++  + ++ AC   G + + R    Y  +    F+L   L   + M+D+ 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK--FQLDVILG--TAMIDMY 176

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            + G +E A ++   M    +V+ W A+  A   HG 
Sbjct: 177 AKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 212


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 310/544 (56%), Gaps = 34/544 (6%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           S SWNV +R         E++ LY+ MLR+G + PD F++P + K CASL L   G ++ 
Sbjct: 15  STSWNVRLRELAYQSLFTESISLYRSMLRSGSS-PDAFSFPFILKSCASLSLPVSGQQLH 73

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL--VSWNSLINGFVRSGF 160
            HV++ G + + +V  A+I ++  CG +  A  VF+E+   +   V +N+LI+G+  +  
Sbjct: 74  CHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSK 133

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             +A  +FR M+   V  D VT++G+V  C   E L LGR +H    + G    V + N+
Sbjct: 134 VSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNS 193

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
            + MY+KCG +ES                                R++FD++P K ++ W
Sbjct: 194 FITMYMKCGSVESG-------------------------------RRLFDEMPVKGLITW 222

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA+I GY Q   + + L LF +M+++G+ PD  T V  LS+C+ LGA   G  +   +E 
Sbjct: 223 NAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEA 282

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F  NV L  AL+ MYA+CGN+AKA  VF  MP ++ +++TA+IG   +HG     ++ 
Sbjct: 283 NGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTL 342

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F +MI  G+ PD   F+ +LSAC H GL D+G + F  M   ++L P  +HYSC+VDLLG
Sbjct: 343 FDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLG 402

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L+EA + I SMP+  D  VWGAL  AC++H NV + E A  K++E +P + G YVL
Sbjct: 403 RAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVL 462

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           ++N+Y DS   E   ++R MM ER   K PG S +E  G ++ F+  D+SH + E+++  
Sbjct: 463 MSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRM 522

Query: 581 LVQL 584
           L +L
Sbjct: 523 LDEL 526



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 180/373 (48%), Gaps = 38/373 (10%)

Query: 39  QNPNS----FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGL 94
           +NP+S      +N  I G+    K+ +A  ++++M +  G   D+ T   L  +C     
Sbjct: 110 ENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRM-KETGVSVDSVTILGLVPLCTVPEY 168

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
            +LG  + G  +K G   ++ V N+ I +++ CG +     +FDE  V+ L++WN++I+G
Sbjct: 169 LWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISG 228

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           + ++G   + + LF  M+   V PD  T++ ++S+CA L    +G+E+   +  +G    
Sbjct: 229 YSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPN 288

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V L+NAL+ MY +CG L  A  +FD M  K++VS T MI  Y   G  +    +FDD+ +
Sbjct: 289 VFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIK 348

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           +                               GI+PD    V  LSACS  G  D G+ +
Sbjct: 349 R-------------------------------GIRPDGAVFVMVLSACSHSGLTDKGLEL 377

Query: 335 HRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            R +++E          + LVD+  + G + +A++    MP E +   + A++G   +H 
Sbjct: 378 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHK 437

Query: 393 KALDAISYFSEMI 405
               A   F+++I
Sbjct: 438 NVDMAELAFAKVI 450


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 291/480 (60%), Gaps = 20/480 (4%)

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG---FPREAIRLFRDMQLE-RVEPDEV 181
           S  D+  A  VF +    N   WN+++     +       EA+ LF  M  + RV+P+  
Sbjct: 64  SSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRF 123

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++ ACA+   L  G++IH  I + G      + + L+ MYV C  +E A  +F   
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 242 V----------------NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           V                +  VV    MI G  + G +  A+ +FD++P++ VV WN +I 
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMIS 243

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY Q     EA+ LF EMQ++ I P+ VT V  L A +++GAL+ G WIH +  K    +
Sbjct: 244 GYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEI 303

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           + VLG+ALVDMY+KCG+I +ALQVF  +P+RN++T++AIIG  A+HG+A DAI +F  M 
Sbjct: 304 DDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG 363

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ P+++ ++GILSAC H GLV+EGR +F+ M  +  L P+++HY CMVDLLGR+G L
Sbjct: 364 KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHL 423

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           EEAE+LIR+MP+  D V+W AL  AC++H N+ +GER A  L+EL P DSG YV L+N+Y
Sbjct: 424 EEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLY 483

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
                WE   +VR  M+   + K PGCS IE++G+++EF+V D SH + ++I   L +++
Sbjct: 484 ASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMS 543



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 208/440 (47%), Gaps = 84/440 (19%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK---MR 60
           TG I      + +I FCA S S+++DY   +   +  PN F WN  +R   ET       
Sbjct: 45  TGQIQDPLTAAEVIKFCAFS-SRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQS 103

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ L+  ML +G  +P+ FT+P + K CA       G +I G ++K GF  D +V + +
Sbjct: 104 EALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNL 163

Query: 121 IHVFVSC-----------------------------------------------GDLGLA 133
           + ++V C                                               GD+  A
Sbjct: 164 VRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSA 223

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            N+FDE   R++VSWN +I+G+ ++G   EAI LF++MQ   ++P+ VT++ ++ A A++
Sbjct: 224 KNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARI 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L LG+ IH Y  ++ + +   L +AL+DMY KCG ++ A ++F++             
Sbjct: 284 GALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFET------------- 330

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                             LP++  + W+AIIG +    R+++A+  FH M   G+ P+ V
Sbjct: 331 ------------------LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDV 372

Query: 314 TTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
             +  LSACS  G +++G  +    ++       +     +VD+  + G++ +A ++   
Sbjct: 373 AYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRN 432

Query: 373 MP-ERNSLTYTAIIGGLALH 391
           MP E + + + A++G   +H
Sbjct: 433 MPIEPDDVIWKALLGACKMH 452


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/480 (41%), Positives = 290/480 (60%), Gaps = 20/480 (4%)

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG---FPREAIRLFRDMQLE-RVEPDEV 181
           S  D+  A  VF +    N   WN+++     +       EA+ LF  M  + RV+P+  
Sbjct: 64  SSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRF 123

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++ ACA+   L  G++IH  I + G      + + L+ MYV C  +E A  +F   
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 242 V----------------NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           V                +  VV    MI G  + G +  A+ +FD++P + VV WN +I 
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMIS 243

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY Q     EA+ LF EMQ++ I P+ VT V  L A +++GAL+ G WIH +  K    +
Sbjct: 244 GYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEI 303

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           + VLG+ALVDMY+KCG+I KALQVF  +P+RN++T++AIIG  A+HG+A DAI +F  M 
Sbjct: 304 DDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG 363

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ P+++ ++GILSAC H GLV+EGR +F+ M  +  L P+++HY CMVDLLGR+G L
Sbjct: 364 KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHL 423

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           EEAE+LIR+MP+  D V+W AL  AC++H N+ +GER A  L+EL P DSG YV L+N+Y
Sbjct: 424 EEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLY 483

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
                WE   +VR  M+   + K PGCS IE++G+++EF+V D SH + ++I   L +++
Sbjct: 484 ASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMS 543



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 208/440 (47%), Gaps = 84/440 (19%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK---MR 60
           TG I      + +I FCA S S+++DY   +   +  PN F WN  +R   ET       
Sbjct: 45  TGQIQDPLTAAEVIKFCAFS-SRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQS 103

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ L+  ML +G  +P+ FT+P + K CA       G +I G ++K GF  D +V + +
Sbjct: 104 EALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNL 163

Query: 121 IHVFVSC-----------------------------------------------GDLGLA 133
           + ++V C                                               GD+  A
Sbjct: 164 VRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSA 223

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            N+FDE   R++VSWN +I+G+ ++G   EAI LF++MQ   ++P+ VT++ ++ A A++
Sbjct: 224 KNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARI 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L LG+ IH Y  ++ + +   L +AL+DMY KCG ++ A ++F++             
Sbjct: 284 GALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFET------------- 330

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                             LP++  + W+AIIG +    R+++A+  FH M   G+ P+ V
Sbjct: 331 ------------------LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDV 372

Query: 314 TTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
             +  LSACS  G +++G  +    ++       +     +VD+  + G++ +A ++   
Sbjct: 373 AYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRN 432

Query: 373 MP-ERNSLTYTAIIGGLALH 391
           MP E + + + A++G   +H
Sbjct: 433 MPIEPDDVIWKALLGACKMH 452


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/463 (41%), Positives = 283/463 (61%), Gaps = 10/463 (2%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM---QLERVEPDEVTMIG 185
           +L  A  + + +    L + NS+I  + +S  P ++   + ++       + PD  T   
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           +V  CAQL+    G  +H  + + G  L   +   L+ MY + G L S   +FD  V   
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           +V+ T M+   AK G +D ARK+FD++PE+  V WNA+I GY Q  RS+EAL +FH MQ 
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G+K + V+ V  LSAC+ L  LD G W+H ++E+    + V LGTALVDMYAKCGN+ +
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDR 297

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A+QVF  M ERN  T+++ IGGLA++G   +++  F++M   G+ P+ ITF+ +L  C  
Sbjct: 298 AMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSV 357

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            GLV+EGRK+F  M +++ + P+L+HY  MVD+ GR+G L+EA   I SMPM   V  W 
Sbjct: 358 VGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWS 417

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
           AL  ACR++ N  +GE A  K++EL+ ++ G YVLL+N+Y D   WE    +R+ M+ +G
Sbjct: 418 ALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKG 477

Query: 546 VEKTPGCSSIEVNGLLYEFIVRDKSHP-------ELEQIYDCL 581
           V+K PGCS IEV+G ++EFIV DKSHP       +LE+I  CL
Sbjct: 478 VKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCL 520



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 203/418 (48%), Gaps = 81/418 (19%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + G++++     + +A  A+  + NLDY  K+L +  NP  F+ N  IR + ++    
Sbjct: 32  LVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPS 91

Query: 61  EAVDLYKQMLR--NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV-- 116
           ++   Y  +L   N    PDN+T+  L + CA L     G  + G V+K GF++D +V  
Sbjct: 92  KSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQT 151

Query: 117 ---------------HN--------------AVIHVFVSCGDLGLACNVFDESCVRNLVS 147
                          HN              A+++    CGD+  A  +FDE   R+ V+
Sbjct: 152 GLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVT 211

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I G+ + G  REA+ +F  MQ+E V+ +EV+M+ ++SAC  L+ L+ GR +H Y+ 
Sbjct: 212 WNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVE 271

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
              + +TV L  AL+DMY KCG ++ A ++F  M  + V + ++ I G A  GF      
Sbjct: 272 RYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGF------ 325

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                     +E+L LF++M+  G++P+ +T +  L  CS +G 
Sbjct: 326 -------------------------GEESLDLFNDMKREGVQPNGITFISVLKGCSVVGL 360

Query: 328 LDDGIWIHRFIEKENFN-LNVVLGTA--------LVDMYAKCGNIAKALQVFHEMPER 376
           +++G        +++F+ +  V G          +VDMY + G + +AL   + MP R
Sbjct: 361 VEEG--------RKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMR 410



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A ++  ++D+  K+   +   +  +WN  I G+ + G+ REA+D++  +++  G + +  
Sbjct: 187 ACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVF-HLMQMEGVKLNEV 245

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           +  L+   C  L +   G  +  +V +    + + +  A++ ++  CG++  A  VF   
Sbjct: 246 SMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGM 305

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             RN+ +W+S I G   +GF  E++ LF DM+ E V+P+ +T I ++  C+ +  +  GR
Sbjct: 306 KERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGR 365

Query: 201 EIHWYISES--GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG--- 255
           + H+    +  G+   +     ++DMY + G+L+ A    +SM  +  V   + ++    
Sbjct: 366 K-HFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACR 424

Query: 256 -YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            Y      +IA++   +L +K    +  +   Y   K  +   +L   M+A G+K
Sbjct: 425 MYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVK 479


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/480 (40%), Positives = 296/480 (61%), Gaps = 7/480 (1%)

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL--KLGFDVDMYVHNAVIHVFVSCG 128
           R G   P     P L +  A    R LG     H L  ++G +VD +V  A++  + +CG
Sbjct: 61  RVGLPAPGRRALPSLLRAIAFA--RSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACG 118

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
            +  A  VFD    R+LV+W  +++ + ++    EA+ LF  M+  RV PD+V +  ++S
Sbjct: 119 RVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLS 178

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
            CA   +L  G+ IH Y+  S   +   ++ ALM+MY  C  +E AE++++ +  K +V 
Sbjct: 179 TCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVL 238

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            TTM+ GYAK G ++IA  IF+ +P K VV W+A+I GY ++ +  EAL LFH+MQ +G+
Sbjct: 239 STTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGV 298

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           KPD +T +  +SAC+ +GAL+    IH F+E  +    + +G AL+DM++KCG++  AL 
Sbjct: 299 KPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALD 358

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF+ MP++N +T+T+II   A+HG    A++ F  M   G+ P+ +TFLG+L ACCH GL
Sbjct: 359 VFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGL 418

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           V+EGR  F  M   +R+ P  +HY CMVDLLGR+ LL +A  LI+SM +  +VV+WG+L 
Sbjct: 419 VEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLL 478

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
            ACR+HG++ +G  AA K+LELDP   G  VLL+N+Y +   W +   V++ + ++  EK
Sbjct: 479 AACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWND---VKEGLSKKDYEK 535



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW+  I G+ E+ K  EA++L+  M R+ G +PD  T   +   CA++G       I   
Sbjct: 269 SWSAMIAGYAESSKPMEALNLFHDMQRS-GVKPDEITMLSVISACANVGALEKARCIHSF 327

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V        + + NA+I +F  CG L LA +VF+    +N+V+W S+I      G  R A
Sbjct: 328 VENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSA 387

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
           + LF +M+ E ++P+ VT +G++ AC     +  GR
Sbjct: 388 LTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGR 423


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/529 (37%), Positives = 314/529 (59%), Gaps = 10/529 (1%)

Query: 60  REAVDLYKQMLRN-GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           R+AV LY QM R   G RP  FT   + K  A   +   G ++  HV K GF  D  +  
Sbjct: 84  RDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIAT 143

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            ++ ++  CG L  A  VFD   V++   +N++I  ++ +G    A  LF  M     E 
Sbjct: 144 TLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMP----ER 199

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +  T++ MV   +   D++  +  H +   +G+   V L  A++  + K G ++ A  +F
Sbjct: 200 NTHTLMEMVGGYSARGDMDSAK--HVFEMANGVVNMV-LCTAMISGFAKTGSVDDARSVF 256

Query: 239 DSMVNKTVVSCTTMI-VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           D M  + V +   MI V YAK G ++ ARK+FD +PE+ VV W ++I GY Q  + K+A+
Sbjct: 257 DGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAV 316

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF +MQ +G+K D  T    +S+C Q+GALD G ++H + +       + +  +L+DMY
Sbjct: 317 KLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMY 376

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITF 416
           +KCG+I KA ++F  + +R+  ++T +I G A++G + +A+  F++M   G +MP+EITF
Sbjct: 377 SKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITF 436

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           LG+L++C HGGLV++G  +F +MS ++ ++P+++HY CMVDLLGR+ LL EAEQ I  MP
Sbjct: 437 LGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMP 496

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +A DV +W +L FACR  G V + E  A ++ EL+P   G  VLL+N+Y  ++ W +  K
Sbjct: 497 IAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNK 556

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           VR  M    V K PGCS IEVNG  +EF+  D++H E E IY+ L+ + 
Sbjct: 557 VRTGMGRSRVSKRPGCSVIEVNGCAHEFLSGDETHLETEAIYNILLGIN 605



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  ++    +I   +   + FSW V I GF   G   EA+DL+ QM   G   P+  T+
Sbjct: 377 SKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITF 436

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKL 108
             +   C+  GL   GY  F  + K+
Sbjct: 437 LGVLTSCSHGGLVEQGYHHFHRMSKV 462


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/643 (33%), Positives = 342/643 (53%), Gaps = 70/643 (10%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKMREAVD 64
           L  H +  + LI  C  +  +   + T +LFN   NPN F +   +R +       + V 
Sbjct: 29  LHHHNYWVALLINHC--TRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVL 86

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI----------------------- 101
           +++ M +  G RPD F YP+L K   + G+ F  + +                       
Sbjct: 87  MFEHM-QGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGP 145

Query: 102 FGHVLKLG--------------------------------FDV----DMYVHNAVIHVFV 125
            GH  K+                                 FDV    ++    A++  + 
Sbjct: 146 IGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYA 205

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
              DL  A   FD    R++VSWN++++G+ ++G   E +RLF +M    +EPDE T + 
Sbjct: 206 KVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVT 265

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNK 244
           ++SAC+   D  L   +   + +  + L   +  AL+DMY KCG + +A  IFD +   +
Sbjct: 266 VISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYR 325

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM- 303
             V+   MI  Y + G LD AR++F+ +P + VV WN++I GY Q  +S  A+ LF EM 
Sbjct: 326 NSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMI 385

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            A  + PD VT V  +SAC  LGAL+ G W+ RF+ +    L++    A++ MY++CG++
Sbjct: 386 TAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSM 445

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             A +VF EM  R+ ++Y  +I G A HG  ++AI+  S M   G+ PD +TF+G+L+AC
Sbjct: 446 EDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTAC 505

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL++EGRK F  +       P + HY+CMVDLLGR G LE+A++ +  MPM     V
Sbjct: 506 SHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGV 560

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           +G+L  A R+H  V +GE AA KL EL+P +SG ++LL+N+Y  +  W++  ++R+ M++
Sbjct: 561 YGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKK 620

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            GV+KT G S +E  G L++FIV D+SH   + IY  L++L +
Sbjct: 621 GGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRK 663


>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 472

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/443 (41%), Positives = 278/443 (62%), Gaps = 1/443 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + +  L        +L++FCA+S++ NLDY   +   +  PN F +N  IRG+  +    
Sbjct: 11  IILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPI 70

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +++ LY+Q++ + G  P+ FT+P + K CAS    ++   + GH  KLGF   + V N +
Sbjct: 71  KSMFLYRQLI-DSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFASLICVQNGL 129

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I+ +++CG +  A  +FD+   R+LVSWNS+I G+ + G+ +E   LF++M+    E D+
Sbjct: 130 INAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADD 189

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T++ ++  C++  D+NLGR +H YI  +G+ + +   NAL+DMY KCG L  AE +F  
Sbjct: 190 FTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQQ 249

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M NK VVS T+MI  YAK G ++ ARK FD +PEK VV WN++I  YVQ  + +EAL LF
Sbjct: 250 MPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLF 309

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           HEM +  + P+  T +  LSAC Q+G L  G  IH +I   +   +V L  +L+DMYAKC
Sbjct: 310 HEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKC 369

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G +  A+ VF+EMP +N +++  IIG LALHG  ++A+  F +M   G+ PDEITF+G+L
Sbjct: 370 GALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLL 429

Query: 421 SACCHGGLVDEGRKYFAQMSSIF 443
           SAC H GLVD G  YF +MSSI+
Sbjct: 430 SACSHSGLVDSGLYYFDKMSSIY 452



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 119/246 (48%), Gaps = 6/246 (2%)

Query: 260 GFLDIARKIFDDL--PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
           G LD A  +F+ +  P K++  +N++I GY  +    +++ L+ ++  +G+ P+  T   
Sbjct: 36  GNLDYAHLVFNQISIPNKFM--YNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPF 93

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L AC+   A    + +H   +K  F   + +   L++ Y  CG I  A ++F +M ER+
Sbjct: 94  VLKACASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERS 153

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++ ++IGG +  G   +    F EM  +G   D+ T + +L  C     ++ GR +  
Sbjct: 154 LVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGR-FVH 212

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
               I  +   L   + ++D+  + G L  AE++ + MP   +VV W ++  A    G V
Sbjct: 213 LYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQQMP-NKNVVSWTSMITAYAKQGLV 271

Query: 498 SIGERA 503
               ++
Sbjct: 272 EYARKS 277


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 316/585 (54%), Gaps = 46/585 (7%)

Query: 10   GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
            GF  SR      +S S NL   T     V   N  SWN  I      G   EA+  +   
Sbjct: 1079 GFPSSRRRP---VSLSSNL--ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS- 1132

Query: 70   LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
            LR  G  P   ++P   K C++L     G          GF+ D++V +A+I ++  CG 
Sbjct: 1133 LRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ 1192

Query: 130  LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP--------DEV 181
            L  A  +FDE  +RN+VSW S+I G+V++     A+ LF+D   E  E         D V
Sbjct: 1193 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252

Query: 182  TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             M+ ++SAC+++    +   +H ++ + G   ++ + N LMD Y KCG+           
Sbjct: 1253 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL--------- 1303

Query: 242  VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                  +++K+FD + EK  + WN++I  Y Q+  S EAL +FH
Sbjct: 1304 ----------------------VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH 1341

Query: 302  EM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
             M +  G++ +AVT    L AC+  GAL  G  IH  + K +   NV +GT+++DMY KC
Sbjct: 1342 GMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKC 1401

Query: 361  GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
            G +  A + F  M E+N  ++TA++ G  +HG+A +A+  F +M+  G+ P+ ITF+ +L
Sbjct: 1402 GRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVL 1461

Query: 421  SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
            +AC H GLV+EG  +F  M   + + P ++HY CMVDL GR+G L EA  LI+ M M  D
Sbjct: 1462 AACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPD 1521

Query: 481  VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             VVWG+L  ACR+H NV +GE AA KL ELDP + G YVLL+N+Y D+  W +  ++R +
Sbjct: 1522 FVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRML 1581

Query: 541  MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            M+ R + K PG S +E+ G ++ F+V DK HP  E IY  L +LT
Sbjct: 1582 MKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLT 1626



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 213/369 (57%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   +++ G   D  +   +IH++ + G +  A  +F +       +WN +I     +G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              +A+ L+++M  + +  D+ T   ++ AC     ++LG+ +H  + + G +  V + N
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+D Y KCG    A ++F+ M  + VVS TT+I G    G L  AR+IFD++P K VV 
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           W A+I GY++ ++ +EAL LF  MQA  I P+  T V  + AC+++G L  G  IH +  
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K    + V LGTAL+DMY+KCG+I  A++VF  MP ++  T+ ++I  L +HG   +A++
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            FSEM  V + PD ITF+G+L AC H   V EG  YF +M+  + ++P  +HY CM +L 
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELY 404

Query: 460 GRSGLLEEA 468
            RS  L+EA
Sbjct: 405 ARSNNLDEA 413



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 178/383 (46%), Gaps = 64/383 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S    + Y   + + +QNP +F+WN+ IR     G   +A+ LYK M+  G    D FT+
Sbjct: 70  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG-IAADKFTF 128

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
           P + K C +     LG  + G ++K GF  D++V N +I  +  CG    A  VF++  V
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188

Query: 143 RNLVSWNS-------------------------------LINGFVRSGFPREAIRLFRDM 171
           RN+VSW +                               +ING++R+  P EA+ LF+ M
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           Q E + P+E TM+ ++ AC ++  L LGR IH Y  ++ + + V L  AL+DMY KCG +
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSI 308

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A E+F++M                               P K +  WN++I       
Sbjct: 309 KDAIEVFETM-------------------------------PRKSLPTWNSMITSLGVHG 337

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLG 350
             +EAL LF EM+   +KPDA+T +  L AC  +  + +G  +  R  +           
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397

Query: 351 TALVDMYAKCGNIAKALQVFHEM 373
             + ++YA+  N+ +A +   E+
Sbjct: 398 ECMTELYARSNNLDEAFKSTKEV 420



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 160/402 (39%), Gaps = 77/402 (19%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C   + L   R+IH  I  SGL+    L   L+ +Y   G++  A  +F  + N  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQN-- 87

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
              CT                             WN II        S++AL L+  M  
Sbjct: 88  --PCT---------------------------FTWNLIIRANTINGLSEQALMLYKNMVC 118

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            GI  D  T    + AC+   ++D G  +H  + K  F+ +V +   L+D Y KCG+   
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRF 178

Query: 366 ALQVFHEM-------------------------------PERNSLTYTAIIGGLALHGKA 394
           AL+VF +M                               P +N +++TA+I G   + + 
Sbjct: 179 ALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQP 238

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-YFAQMSSIFRLSPKLKHYS 453
            +A+  F  M    + P+E T + ++ AC   G++  GR  +   + +   +   L   +
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG--T 296

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLL 508
            ++D+  + G +++A ++  +MP  + +  W ++  +  +HG   +G+ A      M+ +
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMPRKS-LPTWNSMITSLGVHG---LGQEALNLFSEMERV 352

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
            + P       +L       N+ E      +M +  G+   P
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 288/466 (61%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D +V  A+   + +CG +     VFD   VR++VSW  +++ + ++   +EA+ LF  M+
Sbjct: 184 DGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMK 243

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V PD++ +  ++ AC  +  L +G+ IH Y+  S + +   +++AL+ +Y  C  +E
Sbjct: 244 NSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANME 303

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            AE++++ M  K +VS T M+ GYA+   ++IAR IFD +PEK VV W+A+I GYV + +
Sbjct: 304 MAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQ 363

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             EAL+LF+ MQ  GI+ D +T +  +SAC+ LG+LD   WIH FI+    N  + +  A
Sbjct: 364 PNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNA 423

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DM+AKCG I  AL VF+EMP +N +T+T++I   A+HG    ++  F +M   G  P+
Sbjct: 424 LIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPN 483

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           E+TFL +L ACCH GLV EGR  F+ M   + + PK +HY CMVDLLGR+ L++EA  LI
Sbjct: 484 EVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLI 543

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
            SM +  +V +WG+L  AC +HG++ +G  AA K+L+LDP   G  VLL  +Y  S+   
Sbjct: 544 ESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLN 603

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            A +VR +M+   V K  G S +E+N   +EF    + HPE  +I+
Sbjct: 604 NAQEVRGVMKLHRVSKETGLSWMELNEPFHEFAAGGEKHPESGKIF 649



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 170/381 (44%), Gaps = 65/381 (17%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW V +  + +T   +EA+ L+ +M +N G  PD      +   C  +    +G  I  +
Sbjct: 218 SWGVMLDSYCQTRNYKEALLLFAKM-KNSGVVPDQLILATVLPACGHIRHLRIGKAIHSY 276

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGL-------------------------------A 133
           +L     +  ++ +A+I ++ SC ++ +                               A
Sbjct: 277 MLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIA 336

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++FD    +++VSW+++I+G+V S  P EA+ LF  MQ   +  DE+TM+ ++SACA L
Sbjct: 337 RSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANL 396

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L+  + IH +I  SGL   + + NAL+DM+ KCG +  A  +F+ M  K V++ T+MI
Sbjct: 397 GSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMI 456

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
             +A  G                                 K +L LF +M+  G +P+ V
Sbjct: 457 SAFAMHG-------------------------------DGKSSLRLFEQMKDEGAEPNEV 485

Query: 314 TTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           T +  L AC   G + +G +     +++            +VD+  +   + +A+ +   
Sbjct: 486 TFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIES 545

Query: 373 MP-ERNSLTYTAIIGGLALHG 392
           M  E N   + +++    +HG
Sbjct: 546 MHLEPNVPIWGSLLAACWMHG 566



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 112/220 (50%), Gaps = 2/220 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           + ++ ++    I   +   +  SW+  I G++++ +  EA+ L+  M +  G R D  T 
Sbjct: 328 ARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGM-QECGIRSDEITM 386

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA+LG       I   +   G +  +++ NA+I +F  CG + LA NVF+E  +
Sbjct: 387 LSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPL 446

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +N+++W S+I+ F   G  + ++RLF  M+ E  EP+EVT + ++ AC     ++ GR +
Sbjct: 447 KNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLL 506

Query: 203 -HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
               + + G+         ++D+  +   ++ A  + +SM
Sbjct: 507 FSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESM 546


>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/459 (42%), Positives = 281/459 (61%), Gaps = 6/459 (1%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G L  AC VF+      L   N++I  F+ +G       +F  M    + PD  T+  ++
Sbjct: 53  GSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVL 112

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            ACA L D +LG+ +H Y S+ GL   + + N+LM MY  CG + +A  +FD M   + V
Sbjct: 113 KACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAV 172

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S + MI GYAK G +D AR  FD+ PEK    W A+I GYVQ    KE L LF  +Q T 
Sbjct: 173 SWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTH 232

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           + PD    V  LSAC+ LGALD GIWIHR++ ++  +L++ L T+L+DMYAKCGN+  A 
Sbjct: 233 VVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAK 292

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           ++F  MPER+ + + A+I GLA+HG    A+  FSEM   G+ PD+ITF+ + +AC + G
Sbjct: 293 RLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACSYSG 352

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-----DVV 482
           +  EG +   +MSS++ + PK +HY C+VDLL R+GL  EA  +IR +   +     + +
Sbjct: 353 MAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETL 412

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
            W A   AC  HG   + ERAA +LL L+   SG+YVLL+N+Y  S    +A +VR MM 
Sbjct: 413 AWRAFLSACCNHGQAQLAERAAKRLLRLE-NHSGVYVLLSNLYAASGKHSDARRVRNMMR 471

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
            +GV+K PGCSS+E++G++ EFI  +++HP++E+I+  L
Sbjct: 472 NKGVDKAPGCSSVEIDGVVSEFIAGEETHPQMEEIHSVL 510



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 206/432 (47%), Gaps = 76/432 (17%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL ++ FA SRL+AFC+     +L Y  ++   + +P     N  I+ FL  G      
Sbjct: 31  TGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTF 90

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +ML NG   PDN+T P + K CA+L    LG  + G+  KLG   D++V N+++ +
Sbjct: 91  HVFTKMLHNG-LGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAM 149

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWN-------------------------------SLI 152
           +  CGD+  A +VFDE    + VSW+                               ++I
Sbjct: 150 YSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMI 209

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+V++   +E + LFR +QL  V PDE   + ++SACA L  L++G  IH Y++   ++
Sbjct: 210 SGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVS 269

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L++ L+ +L+DMY KCG LE A+ +FDSM  + +V    MI G A  G            
Sbjct: 270 LSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHG------------ 317

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                  AL +F EM+ TGIKPD +T +   +ACS  G   +G+
Sbjct: 318 -------------------DGASALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGL 358

Query: 333 WIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPERN------SLTYT 382
              + ++K +    +   +     LVD+ ++ G   +A+ +   +   +      +L + 
Sbjct: 359 ---QLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWR 415

Query: 383 AIIGGLALHGKA 394
           A +     HG+A
Sbjct: 416 AFLSACCNHGQA 427


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/544 (36%), Positives = 309/544 (56%), Gaps = 34/544 (6%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           S  WNV +R         E++ LY+ MLR+G + PD F++P + K CASL L   G ++ 
Sbjct: 18  STPWNVRLRELAYQSLFSESISLYRSMLRSGSS-PDAFSFPFILKSCASLSLPVSGQQLH 76

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS--WNSLINGFVRSGF 160
            HV K G + + +V  A+I ++  CG +  A  VF+E+   + +S  +N+LI+G+  +  
Sbjct: 77  CHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSK 136

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             +A  +FR M+   V  D VTM+G+V  C   E L LGR +H    + GL   V + N+
Sbjct: 137 VTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
            + MY+KCG +E+                                R++FD++P K ++ W
Sbjct: 197 FITMYMKCGSVEAG-------------------------------RRLFDEMPVKGLITW 225

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA+I GY Q   + + L L+ +M+++G+ PD  T V  LS+C+ LGA   G  + + +E 
Sbjct: 226 NAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVES 285

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F  NV +  A + MYA+CGN+AKA  VF  MP ++ +++TA+IG   +HG     +  
Sbjct: 286 NGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLML 345

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F +MI  G+ PD   F+ +LSAC H GL D+G + F  M   ++L P  +HYSC+VDLLG
Sbjct: 346 FDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLG 405

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L+EA + I SMP+  D  VWGAL  AC++H NV + E A  K++E +P + G YVL
Sbjct: 406 RAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVL 465

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           ++N+Y DS   E   ++R MM ER   K PG S +E  G ++ F+  D+SH + E+++  
Sbjct: 466 MSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRM 525

Query: 581 LVQL 584
           L +L
Sbjct: 526 LDEL 529


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 312/561 (55%), Gaps = 41/561 (7%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNFTYPLLF 86
           +++  +        ++F  N  I       +  +   L++ + R      PD +T+  L 
Sbjct: 73  INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K CA+      G  + G VLK G   D+YV  A++ ++V  G LG A  VFDE  VR+ V
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW ++I G+ R G   EA RLF +M+                           R+I  + 
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEME--------------------------DRDIVAF- 225

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
                       NA++D YVK G +  A E+F+ M  + VVS T+M+ GY   G ++ A+
Sbjct: 226 ------------NAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAK 273

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +FD +PEK V  WNA+IGGY Q +RS +AL LF EMQ   ++P+ VT V  L A + LG
Sbjct: 274 LMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLG 333

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           ALD G WIHRF  ++  + +  +GTAL+DMYAKCG I KA   F  M ER + ++ A+I 
Sbjct: 334 ALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALIN 393

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A++G A +A+  F+ MI  G  P+E+T +G+LSAC H GLV+EGR++F  M   F ++
Sbjct: 394 GFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMER-FGIA 452

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P+++HY CMVDLLGR+G L+EAE LI++MP  A+ ++  +  FAC    +V   ER   +
Sbjct: 453 PQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKE 512

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           ++++D   +G YV+L N+Y     W +   V++MM++RG  K   CS IE+ G   EF  
Sbjct: 513 VVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAA 572

Query: 567 RDKSHPELEQIYDCLVQLTRH 587
            D  H  LE I   L QL++H
Sbjct: 573 GDYLHSHLEVIQLTLGQLSKH 593


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/631 (34%), Positives = 340/631 (53%), Gaps = 72/631 (11%)

Query: 29  DYCTKILFNVQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           D+   +  N++NP   S WN  + G+ +     EA++L++++L     +PD++TYP +FK
Sbjct: 55  DHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFK 114

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C  L    LG  I   ++K G  +D+ V ++++ ++  C     A  +F+E   +++  
Sbjct: 115 ACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVAC 174

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+ + +SG  ++A+  F  M+    EP+ VT+   +S+CA+L DLN G EIH  + 
Sbjct: 175 WNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELI 234

Query: 208 ESGLTL-------------------------------TVPLANALMDMYVKCGKLESAEE 236
            SG  L                               TV   N+++  Y   G + S  +
Sbjct: 235 NSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQ 294

Query: 237 IFDSMVNK------TVVSCTTMIVG---------------------------------YA 257
           +F  M N+      T +S   M+                                   Y 
Sbjct: 295 LFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYF 354

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
           K G +++A KIF  +P+  VV WN +I GYV   +  EAL LF EM+ + ++ DA+T   
Sbjct: 355 KCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTS 414

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L+ACSQL AL+ G  IH  I ++  + N V+  AL+DMYAKCG + +A  VF  +P+R+
Sbjct: 415 VLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRD 474

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++T++I     HG A  A+  F+EM+   + PD + FL ILSAC H GLVDEG  YF 
Sbjct: 475 LVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFN 534

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGN 496
           QM +++ + P+++HYSC++DLLGR+G L EA ++++  P +  DV +   LF ACRLH N
Sbjct: 535 QMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRN 594

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           + +G   A  L++ DP DS  Y+LL+NMY  ++ W+E   VR  M+E G++K PGCS IE
Sbjct: 595 IDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIE 654

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           +N  +  F V D SH  LE ++ CL  L+ H
Sbjct: 655 INQKILPFFVEDNSHLHLELVFKCLSYLSDH 685



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 195/409 (47%), Gaps = 40/409 (9%)

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD---E 139
           PLL     S  L+  G  I   V+ LG   D+++   +I+ ++SC     A  VFD    
Sbjct: 8   PLLRACMNSKSLK-QGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMEN 66

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNL 198
            C  +L  WN L+ G+ ++    EA+ LF   +    ++PD  T   +  AC  L    L
Sbjct: 67  PCEISL--WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVL 124

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+ IH  + ++GL + + + ++L+ MY KC   E A  +F+ M                 
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEM----------------- 167

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
                         PEK V  WN +I  Y Q+   K+AL  F  M+  G +P++VT    
Sbjct: 168 --------------PEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTA 213

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           +S+C++L  L+ G+ IH  +    F L+  + +ALVDMY KCG++  A+++F +MP++  
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTV 273

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + + ++I G  L G  +  I  F  M   G+ P   T   ++  C     + EG K+   
Sbjct: 274 VAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHG 332

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +   R+ P +   S ++DL  + G +E AE++ + +P  + VV W  +
Sbjct: 333 YTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIP-KSKVVSWNVM 380



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 173/374 (46%), Gaps = 36/374 (9%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI+ GF     I+   +    +  +L+   +I   +      +WN  I G+   G +   
Sbjct: 233 LINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISC 292

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + L+K+M  N G +P   T   L  VC+       G  + G+ ++     D++V+++++ 
Sbjct: 293 IQLFKRMY-NEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMD 351

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG + LA  +F       +VSWN +I+G+V  G   EA+ LF +M+   VE D +T
Sbjct: 352 LYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAIT 411

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
              +++AC+QL  L  G+EIH  I E  L     +  AL+DMY KCG ++ A  +F  + 
Sbjct: 412 FTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP 471

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            + +VS T+MI  Y   G                                +  AL LF E
Sbjct: 472 KRDLVSWTSMITAYGSHG-------------------------------HAYGALELFAE 500

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           M  + +KPD V  +  LSAC   G +D+G  + ++ I        V   + L+D+  + G
Sbjct: 501 MLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAG 560

Query: 362 NIAKALQVFHEMPE 375
            + +A ++  + PE
Sbjct: 561 RLHEAYEILQQNPE 574



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 12/184 (6%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L AC    +L  G  IH+ +       ++ L   L++ Y  C     A  VF  M     
Sbjct: 10  LRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCE 69

Query: 379 LT-YTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYF 436
           ++ +  ++ G   +   ++A+  F +++    L PD  T+  +  AC  GGL    R   
Sbjct: 70  ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC--GGL---HRYVL 124

Query: 437 AQMSSIFRLSPKLKHY----SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            +M     +   L       S +V + G+    E+A  L   MP   DV  W  +     
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMP-EKDVACWNTVISCYY 183

Query: 493 LHGN 496
             GN
Sbjct: 184 QSGN 187


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 306/537 (56%), Gaps = 34/537 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N   W   + G+ + G   +AV+ ++ M    G   + +T+P +   C+S+  R  G ++
Sbjct: 229 NHVLWTAMVTGYAQNGDGYKAVEFFRYM-HAQGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G ++K GF  ++YV +A++ ++  CGDL  A N+ +     ++VSWNSL+ GFVR G  
Sbjct: 288 HGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLE 347

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA+RLF++M    ++ D+ T   +++ C  +  +N  + +H  I ++G      ++NAL
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVSNAL 405

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY                               AK G +D A  +F+ + EK V+ W 
Sbjct: 406 VDMY-------------------------------AKTGDMDCAYTVFEKMLEKDVISWT 434

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           +++ GY Q    +E+L +F +M+ TG+ PD       LSAC++L  L+ G  +H    K 
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS 494

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               +  +  +LV MYAKCG +  A  +F  M  ++ +T+TAII G A +GK  +++ ++
Sbjct: 495 GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFY 554

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M+  G  PD ITF+G+L AC H GLVDEGRKYF QM+ ++ + P  +HY+CM+DL GR
Sbjct: 555 DAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGR 614

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           SG L+EA+QL+  M +  D  VW +L  ACR+H N+ + ERAA  L EL+P ++  YV+L
Sbjct: 615 SGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVML 674

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +NMY  S  W +  K+RK+M+ +G+ K PGCS +E+N  +  FI  D+ HP   +IY
Sbjct: 675 SNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIY 731



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 197/393 (50%), Gaps = 44/393 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  S+ +  S L+   A  +  +L     +L  +++ +  SWN  + GF+  G   EA+
Sbjct: 294 SGFGSNVYVQSALVDMYA--KCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEAL 351

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+K M      + D++T+P +   C    +      + G ++K GF+    V NA++ +
Sbjct: 352 RLFKNM-HGRNMKIDDYTFPSVLNCCVVGSIN--PKSVHGLIIKTGFENYKLVSNALVDM 408

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +   GD+  A  VF++   ++++SW SL+ G+ ++    E++++F DM++  V PD+  +
Sbjct: 409 YAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIV 468

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++SACA+L  L  G+++H    +SGL  +  + N+L+ MY KCG L+ A+ IF SM  
Sbjct: 469 ASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQV 528

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           K V++ T +IVGYA+ G                               + + +L  +  M
Sbjct: 529 KDVITWTAIIVGYAQNG-------------------------------KGRNSLKFYDAM 557

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG----TALVDMYAK 359
            ++G +PD +T +  L ACS  G +D+G    ++ ++ N    +  G      ++D++ +
Sbjct: 558 VSSGTRPDFITFIGLLFACSHAGLVDEG---RKYFQQMNKVYGIKPGPEHYACMIDLFGR 614

Query: 360 CGNIAKALQVFHEMPERNSLT-YTAIIGGLALH 391
            G + +A Q+  +M  +   T + +++    +H
Sbjct: 615 SGKLDEAKQLLDQMDVKPDATVWKSLLSACRVH 647



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 51/384 (13%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D Y  N +I  +V+ G L  A  +FD    ++ ++W+S+I+G+ + G   EA  LFR M+
Sbjct: 95  DEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMR 154

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           LE  +  + T+  ++  C+ L  +  G  IH ++ ++G    V +   L+DMY KC  + 
Sbjct: 155 LEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVS 214

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            AE +F  +                             +   K  V W A++ GY Q   
Sbjct: 215 EAEFLFKGL-----------------------------EFDRKNHVLWTAMVTGYAQNGD 245

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             +A+  F  M A G++ +  T    L+ACS + A   G  +H FI K  F  NV + +A
Sbjct: 246 GYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSA 305

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           LVDMYAKCG++  A  +   M + + +++ +++ G   HG   +A+  F  M G  +  D
Sbjct: 306 LVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKID 365

Query: 413 EITFLGILSAC---------CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           + TF  +L+ C          HG ++  G + +  +S            + +VD+  ++G
Sbjct: 366 DYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVS------------NALVDMYAKTG 413

Query: 464 LLEEAEQLIRSMPMAADVVVWGAL 487
            ++ A  +   M +  DV+ W +L
Sbjct: 414 DMDCAYTVFEKM-LEKDVISWTSL 436



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           R IH   + +    ++   N L++   K G++  A ++FD M  K   S  TMI  Y   
Sbjct: 52  RSIH--TTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNV 109

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G L  AR++FD    K  + W++II GY +     EA  LF  M+  G K    T    L
Sbjct: 110 GRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVL 169

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH--EMPERN 377
             CS LG +  G  IH F+ K  F  NV + T LVDMYAKC  +++A  +F   E   +N
Sbjct: 170 RVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKN 229

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-----------HG 426
            + +TA++ G A +G    A+ +F  M   G+  ++ TF  IL+AC            HG
Sbjct: 230 HVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHG 289

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
            +V  G                +   S +VD+  + G L+ A+ ++ +M    DVV W +
Sbjct: 290 FIVKSG------------FGSNVYVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNS 336

Query: 487 LFFACRLHG 495
           L      HG
Sbjct: 337 LMVGFVRHG 345


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 319/551 (57%), Gaps = 38/551 (6%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P +FS+NV +R F  T + R A+ L+ +MLR    RPD +T P L    A          
Sbjct: 80  PTAFSYNVTLRFFAST-RPRTALRLFLRMLR-AALRPDAYTLPFLLLAAARAPEPPFARS 137

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
               + +LG     +  ++++ ++ + GD   A  VFD    R++VSWN+++  + R+G 
Sbjct: 138 AHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGM 197

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             +  R+FRDM  E  V P+EVT+  +++AC    DL LGR +  ++  + + +   + +
Sbjct: 198 AADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGS 257

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+ MY KCG++  A                               R++FD +  K VV 
Sbjct: 258 ALVGMYEKCGEMTEA-------------------------------RRVFDGIAHKDVVA 286

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA+I GY Q   SKEA+ALFH M+  G  PD +T V  LSAC+ +GAL+ G  +  +  
Sbjct: 287 WNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYAS 346

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
                 NV +GTALVDMY+KCG++ KA+QVF ++P +N  T+ A+I GLA +G+  +AI 
Sbjct: 347 HRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIR 406

Query: 400 YFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
            F  M    GL PD+ITF+G+LSAC H GL+ +GR++F  ++S F++ PK++HYSCMVDL
Sbjct: 407 QFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDL 466

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           L R+G LEEA   +  +P  AD V+ GAL  ACR   NV + ER   ++++L+P +S  Y
Sbjct: 467 LARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLEPSNSWNY 526

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH---PELE 575
           V+ + +Y  S+  +++ K+R +M ERGV K PGCS +EV+G + EF   D+S     ++ 
Sbjct: 527 VVSSKIYASSDRLDDSAKMRGLMRERGVSKIPGCSWVEVSGKVLEFYAGDESQHGADDMY 586

Query: 576 QIYDCLVQLTR 586
           Q++D L+   R
Sbjct: 587 QLHDMLIDEMR 597


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/621 (34%), Positives = 330/621 (53%), Gaps = 72/621 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNL-----DYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           +GL++  +A SRL+ F   + +  L      +  ++   V++PN+F+ N  ++  L  G 
Sbjct: 30  SGLLADAYAASRLLLFTTSATAARLLPHPLHHSLQLFGLVRSPNAFTCNTLLKAALRQGF 89

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH- 117
                 LY  M       PD +T+PLL   CA+ G    G ++  H +K GF  ++Y+  
Sbjct: 90  PHLCFPLYASM----PAAPDTYTHPLLAAACAARGDVREGLQVHSHSVKHGFSDNLYLRN 145

Query: 118 ------------------------------NAVIHVFVSCGDLGLACNVF---------- 137
                                         N ++  +V  GD+  A  VF          
Sbjct: 146 ALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAA 205

Query: 138 ---------------------DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                                D +  R+  +W ++++ F R+    EA+ +F DM+ E  
Sbjct: 206 VSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGW 265

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
             DE  M+ +V+ACA+   +  G   H  +  +GL   V + N L+ MY  C  + +A  
Sbjct: 266 PVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARR 325

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD+  +    S  +MI GY K G ++ A+ +FD +P+K  V W+A+I G V   +S EA
Sbjct: 326 LFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEA 385

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L +F  M+A  IKPD VT V  +SACS L AL+ G  +H +I K  +N+ +VLGT+L+DM
Sbjct: 386 LNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDM 445

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEIT 415
           Y KCG +  AL+VF  + E+ +  + A+I GLA++G    ++  FSEM   G  +P+EIT
Sbjct: 446 YMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEIT 505

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F G+LSAC HGGLV+EGR++F  M + +++ P ++HY CMVDLLGR+G + EAE +I+SM
Sbjct: 506 FTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSM 565

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM+ DV  WGAL  AC  HG+  +GER   KL++LDP   G   +L+N+Y    MW+   
Sbjct: 566 PMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVK 625

Query: 536 KVRKMMEERGVEKTPGCSSIE 556
            +R  M+++ V K  GCS +E
Sbjct: 626 DLRGSMKQQHVAKVAGCSMVE 646


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/562 (35%), Positives = 324/562 (57%), Gaps = 2/562 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ++  +D+  ++  ++   +  SWN+ +    ++G++REA+D+   M ++ G R D+ TY 
Sbjct: 236 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM-QSKGVRLDSTTYT 294

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                CA L     G ++   V++    +D YV +A++ ++   G    A  VF+    R
Sbjct: 295 SSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 354

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           N V+W  LI+GF++ G   E++ LF  M+ E +  D+  +  ++S C    DL LGR++H
Sbjct: 355 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 414

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               +SG    V ++N+L+ MY KC  L+SAE IF  M  K +VS T+MI  Y++ G + 
Sbjct: 415 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVA 474

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSAC 322
            AR+ FD + EK V+ WNA++G Y+Q    ++ L ++  M +   ++PD VT V     C
Sbjct: 475 KAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGC 534

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + LGA   G  I     K    ++  +  A++ MY+KCG I +A +VF  +  ++ +++ 
Sbjct: 535 ADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWN 594

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I G + HG    AI  F +++  G  PD I+++ +LS C H GLV EG+ YF  M   
Sbjct: 595 AMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRA 654

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             +SP L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC++HGN  + E 
Sbjct: 655 HNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAEL 714

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  + ELD  DSG Y+L+A +Y D+   +++ ++RK+M ++G++K PG S +EV+  ++
Sbjct: 715 AAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVH 774

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
            F   D SHP++  I   L +L
Sbjct: 775 VFKADDVSHPQVLAIRKKLDEL 796



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 201/390 (51%), Gaps = 9/390 (2%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++  HN +++ +   G L  A  +F     R++ SWN+L++G+ +S     ++  F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 173 LERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P+  T+   + +C  L   +L  ++   + +        +A AL+DM+V+CG +
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A  +F  +   T+    +M+ GY K   +D A ++FD +PE+ VV WN ++    Q+ 
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R +EAL +  +MQ+ G++ D+ T    L+AC++L +L  G  +H  + +   +++  + +
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 329

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALV++YAK G   +A  VF+ + +RN++ +T +I G   +G   +++  F++M    +  
Sbjct: 330 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 389

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY---SCMVDLLGRSGLLEEA 468
           D+     ++S CC    +  GR    Q+ S+   S +++     + ++ +  +   L+ A
Sbjct: 390 DQFALATLISGCCSRMDLCLGR----QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 445

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           E + R M    D+V W ++  A    GNV+
Sbjct: 446 EAIFRFMN-EKDIVSWTSMITAYSQVGNVA 474



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 224/487 (45%), Gaps = 42/487 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ ++ +   +++ +  M R+G + P+ FT     K C +LG   L  ++   
Sbjct: 124 SWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAM 183

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACN----------------------------- 135
           V K     D  V  A++ +FV CG + LA                               
Sbjct: 184 VQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHA 243

Query: 136 --VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             +FD    R++VSWN +++   +SG  REA+ +  DMQ + V  D  T    ++ACA+L
Sbjct: 244 LELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARL 303

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  +   +   +A+AL+++Y K G  + A+ +F+S+ ++  V+ T +I
Sbjct: 304 SSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLI 363

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+ ++G    + ++F+ +  + +      +   +    S+  L L  ++ +  +K   +
Sbjct: 364 SGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 423

Query: 314 TTV----HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
             V      +S  ++   L     I RF+ ++    ++V  T+++  Y++ GN+AKA + 
Sbjct: 424 QAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK----DIVSWTSMITAYSQVGNVAKAREF 479

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGL 428
           F  M E+N +T+ A++G    HG   D +  +  M+    + PD +T++ +   C   G 
Sbjct: 480 FDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGA 539

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
              G +   +   +  L       + ++ +  + G + EA ++   + +  D+V W A+ 
Sbjct: 540 NKLGDQIIGRTVKV-GLIIDTSVANAVITMYSKCGRILEARKVFDFLNV-KDIVSWNAMI 597

Query: 489 FACRLHG 495
                HG
Sbjct: 598 TGYSQHG 604



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 144/328 (43%), Gaps = 34/328 (10%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N  +WN  +  +++ G   + + +YK ML     RPD  
Sbjct: 466 AYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWV 525

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LFK CA LG   LG +I G  +K+G  +D  V NAVI ++  CG +  A  VFD  
Sbjct: 526 TYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFL 585

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
            V+++VSWN++I G+ + G  ++AI +F D+     +PD ++ + ++S C          
Sbjct: 586 NVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC---------- 635

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
                 S SGL   V       DM  +   +    E F  MV+         ++G A  G
Sbjct: 636 ------SHSGL---VQEGKFYFDMMKRAHNISPGLEHFSCMVD---------LLGRA--G 675

Query: 261 FLDIARKIFDDLPEKYVVP-WNAIIGG-YVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            L  A+ + DD+P K     W A++    +        LA  H  +     PD+ + +  
Sbjct: 676 HLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDS--PDSGSYMLM 733

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLN 346
               +  G  DD   I + +  +    N
Sbjct: 734 AKIYADAGKSDDSAQIRKLMRDKGIKKN 761



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 42/321 (13%)

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIF-DSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           GL   V L N L+  Y+ CG L  A  +    + +  V++   M+ GYAK G L  A ++
Sbjct: 54  GLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVEL 113

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK-PDAVTTVHCLSACSQLGA 327
           F  +P + V  WN ++ GY Q+++   +L  F  M  +G   P+A T    + +C  LG 
Sbjct: 114 FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 173

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG-------------------------- 361
               + +   ++K +   +  +  ALVDM+ +CG                          
Sbjct: 174 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 233

Query: 362 -----NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
                 +  AL++F  MPER+ +++  ++  L+  G+  +A+    +M   G+  D  T+
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRS 474
              L+AC     +  G++  AQ   + R  P +  Y  S +V+L  +SG  +EA+ +  S
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQ---VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNS 350

Query: 475 M----PMAADVVVWGALFFAC 491
           +     +A  V++ G L + C
Sbjct: 351 LHDRNNVAWTVLISGFLQYGC 371


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/533 (37%), Positives = 300/533 (56%), Gaps = 32/533 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G++E     +A+ L+++M   G  +P+  TY ++ K CASL     G E+   
Sbjct: 96  SWNAMIAGYVEHKHAEDAMRLFREMCHEG-VQPNAGTYMIILKACASLSALKWGKEVHAC 154

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +   G + D+ V  A++ ++  CG +  A  +FD     +++SW  +I  + +SG  +EA
Sbjct: 155 IRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEA 214

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
            RL   M+ E  +P+ +T + +++ACA    L   + +H +  ++GL L V +  AL+ M
Sbjct: 215 YRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQM 274

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y                               AK G +D AR +FD +  + VV WN +I
Sbjct: 275 Y-------------------------------AKSGSIDDARVVFDRMKVRDVVSWNVMI 303

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
           G + +  R  EA  LF +MQ  G KPDA+  +  L+AC+  GAL+    IHR        
Sbjct: 304 GAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           ++V +GTALV MY+K G+I  A  VF  M  RN +++ A+I GLA HG   DA+  F  M
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRM 423

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G+ PD +TF+ +LSAC H GLVDEGR  +  M+ ++ + P + H +CMVDLLGR+G 
Sbjct: 424 TAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGR 483

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L EA+  I +M +  D   WGAL  +CR +GNV +GE  A + L+LDP+++  YVLL+N+
Sbjct: 484 LMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNI 543

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y ++  W+    VR MM ERG+ K PG S IEV+  +++F+V D SHPE ++I
Sbjct: 544 YAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEI 596



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 207/422 (49%), Gaps = 33/422 (7%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G   D+F Y  + K C          ++   ++K   + + +V N ++HV++ CG L  A
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VFD    ++  SWN++I G+V      +A+RLFR+M  E V+P+  T + ++ ACA L
Sbjct: 83  RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+E+H  I   GL   V +  AL+ MY KCG +  A  IFD+++N  ++S T M 
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVM- 201

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                                         IG Y Q+   KEA  L  +M+  G KP+A+
Sbjct: 202 ------------------------------IGAYAQSGNGKEAYRLMLQMEQEGFKPNAI 231

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T V  L+AC+  GAL     +HR        L+V +GTALV MYAK G+I  A  VF  M
Sbjct: 232 TYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRM 291

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             R+ +++  +IG  A HG+  +A   F +M   G  PD I FL IL+AC   G + E  
Sbjct: 292 KVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL-EWV 350

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           K   + +    L   ++  + +V +  +SG +++A  +   M +  +VV W A+      
Sbjct: 351 KKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKV-RNVVSWNAMISGLAQ 409

Query: 494 HG 495
           HG
Sbjct: 410 HG 411



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 180/386 (46%), Gaps = 41/386 (10%)

Query: 10  GFAPSRLIAFC-AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQ 68
           G A  R+   C +I+E++      +I  N+ N +  SW V I  + ++G  +EA  L  Q
Sbjct: 167 GTALLRMYGKCGSINEAR------RIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQ 220

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           M +  G +P+  TY  +   CAS G       +  H L  G ++D+ V  A++ ++   G
Sbjct: 221 MEQE-GFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSG 279

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
            +  A  VFD   VR++VSWN +I  F   G   EA  LF  MQ E  +PD +  + +++
Sbjct: 280 SIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILN 339

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           ACA    L   ++IH +  +SGL + V +  AL+ MY K G ++ A  +FD M  + VVS
Sbjct: 340 ACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS 399

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              MI G A+ G                                 ++AL +F  M A G+
Sbjct: 400 WNAMISGLAQHGL-------------------------------GQDALEVFRRMTAHGV 428

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           KPD VT V  LSACS  G +D+G   +    +      +V     +VD+  + G + +A 
Sbjct: 429 KPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAK 488

Query: 368 QVFHEMP-ERNSLTYTAIIGGLALHG 392
                M  + +  T+ A++G    +G
Sbjct: 489 LFIDNMAVDPDEATWGALLGSCRTYG 514



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 5/219 (2%)

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           EA+ +       G+  D+   V  L  C +   L     +H  I K     N  +   L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
            +Y +CG + +A  VF  + +++  ++ A+I G   H  A DA+  F EM   G+ P+  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           T++ IL AC     +  G++  A +     L   ++  + ++ + G+ G + EA ++  +
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRH-GGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           + M  D++ W  +  A    GN   G+ A   +L+++ +
Sbjct: 190 L-MNHDIISWTVMIGAYAQSGN---GKEAYRLMLQMEQE 224


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/562 (35%), Positives = 324/562 (57%), Gaps = 2/562 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ++  +D+  ++  ++   +  SWN+ +    ++G++REA+D+   M ++ G R D+ TY 
Sbjct: 216 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM-QSKGVRLDSTTYT 274

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                CA L     G ++   V++    +D YV +A++ ++   G    A  VF+    R
Sbjct: 275 SSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 334

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           N V+W  LI+GF++ G   E++ LF  M+ E +  D+  +  ++S C    DL LGR++H
Sbjct: 335 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               +SG    V ++N+L+ MY KC  L+SAE IF  M  K +VS T+MI  Y++ G + 
Sbjct: 395 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVA 454

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSAC 322
            AR+ FD + EK V+ WNA++G Y+Q    ++ L ++  M +   ++PD VT V     C
Sbjct: 455 KAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGC 514

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + LGA   G  I     K    ++  +  A++ MY+KCG I +A +VF  +  ++ +++ 
Sbjct: 515 ADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWN 574

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I G + HG    AI  F +++  G  PD I+++ +LS C H GLV EG+ YF  M   
Sbjct: 575 AMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRA 634

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             +SP L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC++HGN  + E 
Sbjct: 635 HNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAEL 694

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  + ELD  DSG Y+L+A +Y D+   +++ ++RK+M ++G++K PG S +EV+  ++
Sbjct: 695 AAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVH 754

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
            F   D SHP++  I   L +L
Sbjct: 755 VFKADDVSHPQVLAIRKKLDEL 776



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 201/390 (51%), Gaps = 9/390 (2%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++  HN +++ +   G L  A  +F     R++ SWN+L++G+ +S     ++  F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 173 LERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P+  T+   + +C  L   +L  ++   + +        +A AL+DM+V+CG +
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A  +F  +   T+    +M+ GY K   +D A ++FD +PE+ VV WN ++    Q+ 
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R +EAL +  +MQ+ G++ D+ T    L+AC++L +L  G  +H  + +   +++  + +
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 309

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALV++YAK G   +A  VF+ + +RN++ +T +I G   +G   +++  F++M    +  
Sbjct: 310 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 369

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY---SCMVDLLGRSGLLEEA 468
           D+     ++S CC    +  GR    Q+ S+   S +++     + ++ +  +   L+ A
Sbjct: 370 DQFALATLISGCCSRMDLCLGR----QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           E + R M    D+V W ++  A    GNV+
Sbjct: 426 EAIFRFMN-EKDIVSWTSMITAYSQVGNVA 454



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 224/487 (45%), Gaps = 42/487 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ ++ +   +++ +  M R+G + P+ FT     K C +LG   L  ++   
Sbjct: 104 SWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAM 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACN----------------------------- 135
           V K     D  V  A++ +FV CG + LA                               
Sbjct: 164 VQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHA 223

Query: 136 --VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             +FD    R++VSWN +++   +SG  REA+ +  DMQ + V  D  T    ++ACA+L
Sbjct: 224 LELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARL 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  +   +   +A+AL+++Y K G  + A+ +F+S+ ++  V+ T +I
Sbjct: 284 SSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+ ++G    + ++F+ +  + +      +   +    S+  L L  ++ +  +K   +
Sbjct: 344 SGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 314 TTV----HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
             V      +S  ++   L     I RF+ ++    ++V  T+++  Y++ GN+AKA + 
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK----DIVSWTSMITAYSQVGNVAKAREF 459

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGL 428
           F  M E+N +T+ A++G    HG   D +  +  M+    + PD +T++ +   C   G 
Sbjct: 460 FDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGA 519

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
              G +   +   +  L       + ++ +  + G + EA ++   + +  D+V W A+ 
Sbjct: 520 NKLGDQIIGRTVKV-GLIIDTSVANAVITMYSKCGRILEARKVFDFLNV-KDIVSWNAMI 577

Query: 489 FACRLHG 495
                HG
Sbjct: 578 TGYSQHG 584



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 144/328 (43%), Gaps = 34/328 (10%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N  +WN  +  +++ G   + + +YK ML     RPD  
Sbjct: 446 AYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWV 505

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LFK CA LG   LG +I G  +K+G  +D  V NAVI ++  CG +  A  VFD  
Sbjct: 506 TYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFL 565

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
            V+++VSWN++I G+ + G  ++AI +F D+     +PD ++ + ++S C          
Sbjct: 566 NVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC---------- 615

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
                 S SGL   V       DM  +   +    E F  MV+         ++G A  G
Sbjct: 616 ------SHSGL---VQEGKFYFDMMKRAHNISPGLEHFSCMVD---------LLGRA--G 655

Query: 261 FLDIARKIFDDLPEKYVVP-WNAIIGG-YVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            L  A+ + DD+P K     W A++    +        LA  H  +     PD+ + +  
Sbjct: 656 HLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDS--PDSGSYMLM 713

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLN 346
               +  G  DD   I + +  +    N
Sbjct: 714 AKIYADAGKSDDSAQIRKLMRDKGIKKN 741



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 42/328 (12%)

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-DSMVNKTVVSCTTMIVGYAKFGF 261
           H  +   GL   V L N L+  Y+ CG L  A  +    + +  V++   M+ GYAK G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK-PDAVTTVHCLS 320
           L  A ++F  +P + V  WN ++ GY Q+++   +L  F  M  +G   P+A T    + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG------------------- 361
           +C  LG     + +   ++K +   +  +  ALVDM+ +CG                   
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 362 ------------NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
                        +  AL++F  MPER+ +++  ++  L+  G+  +A+    +M   G+
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEE 467
             D  T+   L+AC     +  G++  AQ   + R  P +  Y  S +V+L  +SG  +E
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQ---VIRNLPHIDPYVASALVELYAKSGCFKE 323

Query: 468 AEQLIRSM----PMAADVVVWGALFFAC 491
           A+ +  S+     +A  V++ G L + C
Sbjct: 324 AKGVFNSLHDRNNVAWTVLISGFLQYGC 351


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 318/558 (56%), Gaps = 2/558 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D+  +   ++   +  SWN+ I    ++G++REA+ L  +M R G  R D+ TY     
Sbjct: 220 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-VRLDSTTYTSSLT 278

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA L     G ++   V++    +D YV +A+I ++  CG    A  VF+    RN VS
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 338

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W  LI G ++     +++ LF  M+ E +  D+  +  ++S C    DL LGR++H    
Sbjct: 339 WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCL 398

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG    + ++N+L+ +Y KCG L++AE +F SM  + +VS T+MI  Y++ G +  AR+
Sbjct: 399 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKARE 458

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLG 326
            FD +  +  + WNA++G Y+Q    ++ L ++  M     + PD VT V     C+ +G
Sbjct: 459 FFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 518

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           A   G  I     K    LNV +  A + MY+KCG I++A ++F  +  ++ +++ A+I 
Sbjct: 519 ANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMIT 578

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G + HG    A   F +M+  G  PD I+++ +LS C H GLV EG+ YF  M+ +  +S
Sbjct: 579 GYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS 638

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC++HGN  + E AA  
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKH 698

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           + ELD  DSG Y+LLA +Y D+   +++ +VRK+M ++G++K PG S +EV   ++ F  
Sbjct: 699 VFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKA 758

Query: 567 RDKSHPELEQIYDCLVQL 584
            D SHP++  I + L +L
Sbjct: 759 DDVSHPQVIAIRNKLDEL 776



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 127/526 (24%), Positives = 224/526 (42%), Gaps = 105/526 (19%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ +  +  + ++ +  M R+G + P+ FT+  + K C +LG R L  ++ G 
Sbjct: 104 SWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGL 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV---------------------------- 136
             K  F  D  V  A++ +FV CG +  A  +                            
Sbjct: 164 FWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHA 223

Query: 137 ---FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
              F++   R++VSWN +I    +SG  REA+ L  +M  + V  D  T    ++ACA+L
Sbjct: 224 IEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARL 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  S   +   +A+AL+++Y KCG  + A+ +F+S+ ++  VS     
Sbjct: 284 FSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS----- 338

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                                     W  +IGG +Q +   +++ LF++M+A  +  D  
Sbjct: 339 --------------------------WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQF 372

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC------------- 360
                +S C     L  G  +H    K   N  +V+  +L+ +YAKC             
Sbjct: 373 ALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 432

Query: 361 ------------------GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
                             GNI KA + F  M  RN++T+ A++G    HG   D +  +S
Sbjct: 433 SERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYS 492

Query: 403 EMIGV-GLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
            M+    + PD +T++ +   C   G   L D+   +  +   I  +S      +  + +
Sbjct: 493 AMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA----NAAITM 548

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
             + G + EA++L   +    DVV W A+      HG   +G++AA
Sbjct: 549 YSKCGRISEAQKLF-DLLNGKDVVSWNAMITGYSQHG---MGKQAA 590



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 196/392 (50%), Gaps = 15/392 (3%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++  HN +++ +   G L  A  +FD    R++ SWN+L++G+ ++    + +  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 173 LERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P+  T   ++ +C  L    L  ++     +        +  AL+DM+V+CG +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A  +F  +   T+    +M+ GYAK   +D A + F+D+ E+ VV WN +I    Q+ 
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R +EAL L  EM   G++ D+ T    L+AC++L +L  G  +H  + +    ++  + +
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+++YAKCG+  +A +VF+ + +RNS+++T +IGG   +     ++  F++M    +  
Sbjct: 310 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH------YSCMVDLLGRSGLL 465
           D+     ++S C +   +  GR+       +  L  K  H       + ++ L  + G L
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQ-------LHSLCLKSGHNRAIVVSNSLISLYAKCGDL 422

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           + AE +  SM    D+V W ++  A    GN+
Sbjct: 423 QNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 453



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 143/298 (47%), Gaps = 9/298 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N+ +WN  +  +++ G   + + +Y  ML      PD  
Sbjct: 446 AYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 505

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LF+ CA +G   LG +I GH +K G  +++ V NA I ++  CG +  A  +FD  
Sbjct: 506 TYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLL 565

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +++VSWN++I G+ + G  ++A + F DM  +  +PD ++ + ++S C+    +  G+
Sbjct: 566 NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGK 625

Query: 201 EIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
                ++   G++  +   + ++D+  + G L  A+++ D M  K        ++   K 
Sbjct: 626 LYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 685

Query: 260 GFLD-----IARKIFD-DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
              D      A+ +F+ D P+       A I  Y  A +S ++  +   M+  GIK +
Sbjct: 686 HGNDELAELAAKHVFELDSPDSGSYMLLAKI--YSDAGKSDDSAQVRKLMRDKGIKKN 741


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 306/557 (54%), Gaps = 41/557 (7%)

Query: 38   VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
            V   N  SWN  I      G   EA+  +   LR  G  P   ++P   K C++L     
Sbjct: 1975 VDKSNVHSWNSVIADLARGGDSVEALRAFSS-LRKLGLIPTRSSFPCTIKSCSALCDLVS 2033

Query: 98   GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
            G          GF+ D++V +A+I ++  CG L  A  +FDE  +RN+VSW S+I G+V+
Sbjct: 2034 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 2093

Query: 158  SGFPREAIRLFRDMQLERVEP--------DEVTMIGMVSACAQLEDLNLGREIHWYISES 209
            +     A+ LF+D   E  E         D V M+ ++SAC+++    +   +H ++ + 
Sbjct: 2094 NEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK 2153

Query: 210  GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            G   ++ + N LMD Y KCG+                                 +++K+F
Sbjct: 2154 GFDGSIGVGNTLMDAYAKCGQPL-------------------------------VSKKVF 2182

Query: 270  DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGAL 328
            D + EK  + WN++I  Y Q+  S EAL +FH M +  G++ +AVT    L AC+  GAL
Sbjct: 2183 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242

Query: 329  DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
              G  IH  + K +   NV +GT+++DMY KCG +  A + F  M E+N  ++TA++ G 
Sbjct: 2243 RAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGY 2302

Query: 389  ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
             +HG+A +A+  F +M+  G+ P+ ITF+ +L+AC H GLV+EG  +F  M   + + P 
Sbjct: 2303 GMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG 2362

Query: 449  LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
            ++HY CMVDL GR+G L EA  LI+ M M  D VVWG+L  ACR+H NV +GE AA KL 
Sbjct: 2363 IEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLF 2422

Query: 509  ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
            ELDP + G YVLL+N+Y D+  W +  ++R +M+ R + K PG S +E+ G ++ F+V D
Sbjct: 2423 ELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGD 2482

Query: 569  KSHPELEQIYDCLVQLT 585
            K HP  E IY  L +LT
Sbjct: 2483 KEHPHHEMIYKYLEKLT 2499



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 213/369 (57%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   +++ G   D  +   +IH++ + G +  A  +F +       +WN +I     +G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              +A+ L+++M  + +  D+ T   ++ AC     ++LG+ +H  + + G +  V + N
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+D Y KCG    A ++F+ M  + VVS TT+I G    G L  AR+IFD++P K VV 
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           W A+I GY++ ++ +EAL LF  MQA  I P+  T V  + AC+++G L  G  IH +  
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K    + V LGTAL+DMY+KCG+I  A++VF  MP ++  T+ ++I  L +HG   +A++
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            FSEM  V + PD ITF+G+L AC H   V EG  YF +M+  + ++P  +HY CM +L 
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELY 404

Query: 460 GRSGLLEEA 468
            RS  L+EA
Sbjct: 405 ARSNNLDEA 413



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 176/376 (46%), Gaps = 64/376 (17%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   + + +QNP +F+WN+ IR     G   +A+ LYK M+  G    D FT+P + K C
Sbjct: 77  YAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKAC 135

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
            +     LG  + G ++K GF  D++V N +I  +  CG    A  VF++  VRN+VSW 
Sbjct: 136 TNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWT 195

Query: 150 S-------------------------------LINGFVRSGFPREAIRLFRDMQLERVEP 178
           +                               +ING++R+  P EA+ LF+ MQ E + P
Sbjct: 196 TVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP 255

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +E TM+ ++ AC ++  L LGR IH Y  ++ + + V L  AL+DMY KCG ++ A E+F
Sbjct: 256 NEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           ++M                               P K +  WN++I         +EAL 
Sbjct: 316 ETM-------------------------------PRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMY 357
           LF EM+   +KPDA+T +  L AC  +  + +G  +  R  +             + ++Y
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELY 404

Query: 358 AKCGNIAKALQVFHEM 373
           A+  N+ +A +   E+
Sbjct: 405 ARSNNLDEAFKSTKEV 420



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +  ++S     S LI+   + E++      +I   + + N  SW   I G++   +  
Sbjct: 186 MRVRNVVSWTTVISGLISCGDLQEAR------RIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA++L+K+M +     P+ +T   L K C  +G+  LG  I  + +K   ++ +Y+  A+
Sbjct: 240 EALELFKRM-QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  CG +  A  VF+    ++L +WNS+I      G  +EA+ LF +M+   V+PD 
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358

Query: 181 VTMIGMVSACAQLEDLNLG 199
           +T IG++ AC  ++++  G
Sbjct: 359 ITFIGVLCACVHIKNVKEG 377



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 160/402 (39%), Gaps = 77/402 (19%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C   + L   R+IH  I  SGL+    L   L+ +Y   G++  A  +F  + N  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQN-- 87

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
              CT                             WN II        S++AL L+  M  
Sbjct: 88  --PCT---------------------------FTWNLIIRANTINGLSEQALMLYKNMVC 118

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            GI  D  T    + AC+   ++D G  +H  + K  F+ +V +   L+D Y KCG+   
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRF 178

Query: 366 ALQVFHEM-------------------------------PERNSLTYTAIIGGLALHGKA 394
           AL+VF +M                               P +N +++TA+I G   + + 
Sbjct: 179 ALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQP 238

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-YFAQMSSIFRLSPKLKHYS 453
            +A+  F  M    + P+E T + ++ AC   G++  GR  +   + +   +   L   +
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG--T 296

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLL 508
            ++D+  + G +++A ++  +MP  + +  W ++  +  +HG   +G+ A      M+ +
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMPRKS-LPTWNSMITSLGVHG---LGQEALNLFSEMERV 352

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
            + P       +L       N+ E      +M +  G+   P
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 89/173 (51%), Gaps = 2/173 (1%)

Query: 33   KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
            K+   ++  +  SWN  I  + ++G   EA++++  M+R+ G R +  T   +   CA  
Sbjct: 2180 KVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHA 2239

Query: 93   GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            G    G  I   V+K+  + ++ V  ++I ++  CG + +A   FD    +N+ SW +++
Sbjct: 2240 GALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMV 2299

Query: 153  NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
             G+   G  +EA+ +F  M    V+P+ +T + +++AC+    +  G   HW+
Sbjct: 2300 AGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG--WHWF 2350



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 28   LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
            ++   K    ++  N  SW   + G+   G+ +EA+D++ +M+R  G +P+  T+  +  
Sbjct: 2277 VEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR-AGVKPNYITFVSVLA 2335

Query: 88   VCASLGLRFLGYEIFGHVLKLGFDVDMYV--HNAVIHVFVSCGDLGLACNVFDESCVR-N 144
             C+  GL   G+  F + +K  +D++  +  +  ++ +F   G L  A N+     ++ +
Sbjct: 2336 ACSHAGLVEEGWHWF-NAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPD 2394

Query: 145  LVSWNSLI 152
             V W SL+
Sbjct: 2395 FVVWGSLL 2402


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/582 (34%), Positives = 323/582 (55%), Gaps = 35/582 (6%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I  GF     I    +S   +  ++D   ++   +   +  ++NV I G+ ++G   +A
Sbjct: 188 VIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKA 247

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
             L+ +M + G  +P+  ++  +   C++      G  +    +  G   D+ V  A+I 
Sbjct: 248 FQLFYRMQQEG-FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIR 306

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           +++ CG +  A  VFD+  VR++VSW  +I G+  +    +A  LF  MQ E ++PD +T
Sbjct: 307 MYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRIT 366

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
            I +++ACA   DL+L REIH  +  +G    + +  AL+ MY KCG ++ A        
Sbjct: 367 YIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDA-------- 418

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                                  R++FD +  + VV W+A+IG YV+    +EA   FH 
Sbjct: 419 -----------------------RQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHL 455

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+   ++PD VT ++ L+AC  LGALD G+ I+    K +   ++ +G AL++M  K G+
Sbjct: 456 MKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGS 515

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I +A  +F  M +R+ +T+  +IGG +LHG A +A+  F  M+     P+ +TF+G+LSA
Sbjct: 516 IERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSA 575

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C   G V+EGR++F+ +     + P ++ Y CMVDLLGR+G L+EAE LI  MP+  +  
Sbjct: 576 CSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSS 635

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +W  L  ACR++GN+ + ERAA + L  +P D  +YV L++MY  + MWE   KVRK+ME
Sbjct: 636 IWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVME 695

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            RGV K  GC+ IEV G L+ F+V D+SHP+  +IY  L +L
Sbjct: 696 SRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARL 737



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 236/473 (49%), Gaps = 38/473 (8%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           +V+N    +WN  I G+ + G ++EA  L++QM+ +    P   T+ ++   C+S     
Sbjct: 121 SVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMV-DEAMEPSIITFLIVLDACSSPAGLK 179

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
           LG E    V+K+GF  D  +  A++ ++V  G +  A  VFD    R++ ++N +I G+ 
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           +SG   +A +LF  MQ E  +P+ ++ + ++  C+  E L  G+ +H     +GL   V 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           +A AL+ MY+ CG +E A                               R++FD +  + 
Sbjct: 300 VATALIRMYMGCGSIEGA-------------------------------RRVFDKMKVRD 328

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV W  +I GY +    ++A  LF  MQ  GI+PD +T +H ++AC+    L     IH 
Sbjct: 329 VVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHS 388

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + +  F  ++++ TALV MYAKCG I  A QVF  M  R+ ++++A+IG    +G   +
Sbjct: 389 QVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEE 448

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A   F  M    + PD +T++ +L+AC H G +D G + + Q      L   +   + ++
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALI 507

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           ++  + G +E A  +  +M +  DVV W  +     LHGN     R A+ L +
Sbjct: 508 NMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNA----REALDLFD 555



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 202/421 (47%), Gaps = 33/421 (7%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           L  G    D+ TY  LF+ C  L    LG ++  H+++ G  +++Y  N +I +   CG+
Sbjct: 52  LGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGN 111

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +  A   FD    + +V+WN++I G+ + G  +EA  LFR M  E +EP  +T + ++ A
Sbjct: 112 MLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDA 171

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C+    L LG+E H  + + G      +  AL+ MYVK G ++ A ++FD +  + V + 
Sbjct: 172 CSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTF 231

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
             MI GYAK G                                 ++A  LF+ MQ  G K
Sbjct: 232 NVMIGGYAKSG-------------------------------DGEKAFQLFYRMQQEGFK 260

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+ ++ +  L  CS   AL  G  +H          +V + TAL+ MY  CG+I  A +V
Sbjct: 261 PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV 320

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F +M  R+ +++T +I G A +    DA   F+ M   G+ PD IT++ I++AC     +
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
              R+  +Q+         L   + +V +  + G +++A Q+  +M    DVV W A+  
Sbjct: 381 SLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSR-RDVVSWSAMIG 438

Query: 490 A 490
           A
Sbjct: 439 A 439


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 318/558 (56%), Gaps = 2/558 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D+  +   ++   +  SWN+ I    ++G++REA+ L  +M R G  R D+ TY     
Sbjct: 220 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-VRLDSTTYTSSLT 278

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA L     G ++   V++    +D YV +A+I ++  CG    A  VF+    RN VS
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 338

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W  LI G ++     +++ LF  M+ E +  D+  +  ++S C    DL LGR++H    
Sbjct: 339 WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCL 398

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG    + ++N+L+ +Y KCG L++AE +F SM  + +VS T+MI  Y++ G +  AR+
Sbjct: 399 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKARE 458

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLG 326
            FD +  +  + WNA++G Y+Q    ++ L ++  M     + PD VT V     C+ +G
Sbjct: 459 FFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 518

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           A   G  I     K    LNV +  A + MY+KCG I++A ++F  +  ++ +++ A+I 
Sbjct: 519 ANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMIT 578

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G + HG    A   F +M+  G  PD I+++ +LS C H GLV EG+ YF  M+ +  +S
Sbjct: 579 GYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS 638

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC++HGN  + E AA  
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKH 698

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           + ELD  DSG Y+LLA +Y D+   +++ +VRK+M ++G++K PG S +EV   ++ F  
Sbjct: 699 VFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKA 758

Query: 567 RDKSHPELEQIYDCLVQL 584
            D SHP++  I + + +L
Sbjct: 759 DDVSHPQVIAIRNKMDEL 776



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 127/526 (24%), Positives = 224/526 (42%), Gaps = 105/526 (19%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ +  +  + ++ +  M R+G + P+ FT+  + K C +LG R L  ++ G 
Sbjct: 104 SWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGL 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV---------------------------- 136
             K  F  D  V  A++ +FV CG +  A  +                            
Sbjct: 164 FWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHA 223

Query: 137 ---FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
              F++   R++VSWN +I    +SG  REA+ L  +M  + V  D  T    ++ACA+L
Sbjct: 224 IEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARL 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  S   +   +A+AL+++Y KCG  + A+ +F+S+ ++  VS     
Sbjct: 284 FSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS----- 338

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                                     W  +IGG +Q +   +++ LF++M+A  +  D  
Sbjct: 339 --------------------------WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQF 372

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC------------- 360
                +S C     L  G  +H    K   N  +V+  +L+ +YAKC             
Sbjct: 373 ALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 432

Query: 361 ------------------GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
                             GNI KA + F  M  RN++T+ A++G    HG   D +  +S
Sbjct: 433 SERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYS 492

Query: 403 EMIGV-GLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
            M+    + PD +T++ +   C   G   L D+   +  +   I  +S      +  + +
Sbjct: 493 AMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA----NAAITM 548

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
             + G + EA++L   +    DVV W A+      HG   +G++AA
Sbjct: 549 YSKCGRISEAQKLF-DLLNGKDVVSWNAMITGYSQHG---MGKQAA 590



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 196/392 (50%), Gaps = 15/392 (3%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++  HN +++ +   G L  A  +FD    R++ SWN+L++G+ ++    + +  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 173 LERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P+  T   ++ +C  L    L  ++     +        +  AL+DM+V+CG +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A  +F  +   T+    +M+ GYAK   +D A + F+D+ E+ VV WN +I    Q+ 
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R +EAL L  EM   G++ D+ T    L+AC++L +L  G  +H  + +    ++  + +
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+++YAKCG+  +A +VF+ + +RNS+++T +IGG   +     ++  F++M    +  
Sbjct: 310 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH------YSCMVDLLGRSGLL 465
           D+     ++S C +   +  GR+       +  L  K  H       + ++ L  + G L
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQ-------LHSLCLKSGHNRAIVVSNSLISLYAKCGDL 422

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           + AE +  SM    D+V W ++  A    GN+
Sbjct: 423 QNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 453



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 143/298 (47%), Gaps = 9/298 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N+ +WN  +  +++ G   + + +Y  ML      PD  
Sbjct: 446 AYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 505

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LF+ CA +G   LG +I GH +K G  +++ V NA I ++  CG +  A  +FD  
Sbjct: 506 TYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLL 565

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +++VSWN++I G+ + G  ++A + F DM  +  +PD ++ + ++S C+    +  G+
Sbjct: 566 NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGK 625

Query: 201 EIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
                ++   G++  +   + ++D+  + G L  A+++ D M  K        ++   K 
Sbjct: 626 LYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 685

Query: 260 GFLD-----IARKIFD-DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
              D      A+ +F+ D P+       A I  Y  A +S ++  +   M+  GIK +
Sbjct: 686 HGNDELAELAAKHVFELDSPDSGSYMLLAKI--YSDAGKSDDSAQVRKLMRDKGIKKN 741


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 318/558 (56%), Gaps = 2/558 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D+  +   ++   +  SWN+ I    ++G++REA+ L  +M R G  R D+ TY     
Sbjct: 210 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-VRLDSTTYTSSLT 268

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA L     G ++   V++    +D YV +A+I ++  CG    A  VF+    RN VS
Sbjct: 269 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 328

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W  LI G ++     +++ LF  M+ E +  D+  +  ++S C    DL LGR++H    
Sbjct: 329 WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCL 388

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG    + ++N+L+ +Y KCG L++AE +F SM  + +VS T+MI  Y++ G +  AR+
Sbjct: 389 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKARE 448

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLG 326
            FD +  +  + WNA++G Y+Q    ++ L ++  M     + PD VT V     C+ +G
Sbjct: 449 FFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 508

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           A   G  I     K    LNV +  A + MY+KCG I++A ++F  +  ++ +++ A+I 
Sbjct: 509 ANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMIT 568

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G + HG    A   F +M+  G  PD I+++ +LS C H GLV EG+ YF  M+ +  +S
Sbjct: 569 GYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS 628

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P L+H+SCMVDLLGR+G L EA+ LI  MPM     VWGAL  AC++HGN  + E AA  
Sbjct: 629 PGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKH 688

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           + ELD  DSG Y+LLA +Y D+   +++ +VRK+M ++G++K PG S +EV   ++ F  
Sbjct: 689 VFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKA 748

Query: 567 RDKSHPELEQIYDCLVQL 584
            D SHP++  I + + +L
Sbjct: 749 DDVSHPQVIAIRNKMDEL 766



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 204/425 (48%), Gaps = 21/425 (4%)

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-N 144
            + C S G       + G ++ +G    +++ N ++H ++SCG L  A  +        N
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP------DEVTMIGMVSACAQLEDLNL 198
           +++ N ++NG+ + G   +A  LF  M    V        D     G   +C  L    L
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
             ++     +        +  AL+DM+V+CG ++ A  +F  +   T+    +M+ GYAK
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
              +D A + F+D+ E+ VV WN +I    Q+ R +EAL L  EM   G++ D+ T    
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L+AC++L +L  G  +H  + +    ++  + +AL+++YAKCG+  +A +VF+ + +RNS
Sbjct: 267 LTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS 326

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +++T +IGG   +     ++  F++M    +  D+     ++S C +   +  GR+    
Sbjct: 327 VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ---- 382

Query: 439 MSSIFRLSPKLKH------YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
              +  L  K  H       + ++ L  + G L+ AE +  SM    D+V W ++  A  
Sbjct: 383 ---LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITAYS 438

Query: 493 LHGNV 497
             GN+
Sbjct: 439 QIGNI 443



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 143/298 (47%), Gaps = 9/298 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N+ +WN  +  +++ G   + + +Y  ML      PD  
Sbjct: 436 AYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 495

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LF+ CA +G   LG +I GH +K G  +++ V NA I ++  CG +  A  +FD  
Sbjct: 496 TYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLL 555

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +++VSWN++I G+ + G  ++A + F DM  +  +PD ++ + ++S C+    +  G+
Sbjct: 556 NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGK 615

Query: 201 EIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
                ++   G++  +   + ++D+  + G L  A+++ D M  K        ++   K 
Sbjct: 616 LYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 675

Query: 260 GFLD-----IARKIFD-DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
              D      A+ +F+ D P+       A I  Y  A +S ++  +   M+  GIK +
Sbjct: 676 HGNDELAELAAKHVFELDSPDSGSYMLLAKI--YSDAGKSDDSAQVRKLMRDKGIKKN 731


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/568 (36%), Positives = 316/568 (55%), Gaps = 36/568 (6%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           +  S +L    K+   +   N  +W + I  F + G  R+A+DL+  M  +G   PD FT
Sbjct: 175 VKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFT 233

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFD 138
           Y  +   C  LGL  LG ++   V++LG  +D+ V  +++ ++  C   G +  +  VF+
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293

Query: 139 ESCVRNLVSWNSLINGFVRSG-FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           +    N++SW ++I  +V+SG   +EAI LF  M    + P+  +   ++ AC  L D  
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 353

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G +++ Y  + G+     + N+L+ MY + G++E A                       
Sbjct: 354 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA----------------------- 390

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
                   RK FD L EK +V +NAI+ GY +  +S+EA  LF+E+  TGI   A T   
Sbjct: 391 --------RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 442

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            LS  + +GA+  G  IH  + K  +  N  +  AL+ MY++CGNI  A QVF+EM +RN
Sbjct: 443 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRN 502

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++T++I G A HG A  A+  F +M+  G  P+EIT++ +LSAC H G++ EG+K+F 
Sbjct: 503 VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 562

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M     + P+++HY+CMVDLLGRSGLL EA + I SMP+ AD +VW  L  ACR+HGN 
Sbjct: 563 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 622

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
            +G  AA  +LE +P D   Y+LL+N++  +  W++  K+RK M+ER + K  GCS IEV
Sbjct: 623 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 682

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLT 585
              ++ F V + SHP+  QIY  L QL 
Sbjct: 683 ENRVHRFHVGETSHPQAWQIYQELDQLA 710



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 206/428 (48%), Gaps = 48/428 (11%)

Query: 54  LETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD 113
           L+ G++  A      M +     PD  TY +L K C       LG  +   +++ G ++D
Sbjct: 2   LDVGRLHHAFSTLDLMTQQNAP-PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELD 60

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
             V N +I ++  CGD   A  +F+     R+LVSW+++++ F  +    +AI  F DM 
Sbjct: 61  SVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML 120

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVK-CGK 230
                P+E     ++ AC+      +G  I+ ++ ++G L   V +   L+DM+VK  G 
Sbjct: 121 ELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 180

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           L SA ++FD M  + +V+ T MI  +A+ G                              
Sbjct: 181 LGSAYKVFDKMPERNLVTWTLMITRFAQLGC----------------------------- 211

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
             +++A+ LF +M+ +G  PD  T    LSAC++LG L  G  +H  + +    L+V +G
Sbjct: 212 --ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 269

Query: 351 TALVDMYAKC---GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA-LDAISYFSEMIG 406
            +LVDMYAKC   G++  + +VF +MPE N +++TAII      G+   +AI  F +MI 
Sbjct: 270 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC----MVDLLGRS 462
             + P+  +F  +L AC  G L D    Y  +    + +   +   +C    ++ +  RS
Sbjct: 330 GHIRPNHFSFSSVLKAC--GNLSD---PYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 384

Query: 463 GLLEEAEQ 470
           G +E+A +
Sbjct: 385 GRMEDARK 392



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 193/382 (50%), Gaps = 37/382 (9%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM-REAVDLYKQMLRNGG 74
           + A CA   S  +D   K+   +   N  SW   I  ++++G+  +EA++L+ +M+ +G 
Sbjct: 275 MYAKCAADGS--VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGH 331

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            RP++F++  + K C +L   + G +++ + +KLG      V N++I ++   G +  A 
Sbjct: 332 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 391

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             FD    +NLVS+N++++G+ ++    EA  LF ++    +     T   ++S  A + 
Sbjct: 392 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 451

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            +  G +IH  + + G      + NAL+ MY +CG +E+A ++F+ M ++ V+S T+MI 
Sbjct: 452 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 511

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G+AK GF                               +  AL +FH+M  TG KP+ +T
Sbjct: 512 GFAKHGF-------------------------------ATRALEMFHKMLETGTKPNEIT 540

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEM 373
            V  LSACS +G + +G      + KE+  +  +   A +VD+  + G + +A++  + M
Sbjct: 541 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 600

Query: 374 P-ERNSLTYTAIIGGLALHGKA 394
           P   ++L +  ++G   +HG  
Sbjct: 601 PLMADALVWRTLLGACRVHGNT 622



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 3/195 (1%)

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R   A +    M      PD  T    L +C +      G  +HR + +    L+ V+  
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 352 ALVDMYAKCGNIAKALQVFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            L+ +Y+KCG+   A  +F  M  +R+ ++++A++   A +     AI  F +M+ +G  
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEEAE 469
           P+E  F  ++ AC +      G   +  +     L   +     ++D+  + SG L  A 
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 470 QLIRSMPMAADVVVW 484
           ++   MP   ++V W
Sbjct: 186 KVFDKMP-ERNLVTW 199


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/568 (36%), Positives = 316/568 (55%), Gaps = 36/568 (6%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           +  S +L    K+   +   N  +W + I  F + G  R+A+DL+  M  +G   PD FT
Sbjct: 193 VKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFT 251

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFD 138
           Y  +   C  LGL  LG ++   V++LG  +D+ V  +++ ++  C   G +  +  VF+
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311

Query: 139 ESCVRNLVSWNSLINGFVRSG-FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           +    N++SW ++I  +V+SG   +EAI LF  M    + P+  +   ++ AC  L D  
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 371

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G +++ Y  + G+     + N+L+ MY + G++E A                       
Sbjct: 372 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA----------------------- 408

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
                   RK FD L EK +V +NAI+ GY +  +S+EA  LF+E+  TGI   A T   
Sbjct: 409 --------RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 460

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            LS  + +GA+  G  IH  + K  +  N  +  AL+ MY++CGNI  A QVF+EM +RN
Sbjct: 461 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRN 520

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++T++I G A HG A  A+  F +M+  G  P+EIT++ +LSAC H G++ EG+K+F 
Sbjct: 521 VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 580

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M     + P+++HY+CMVDLLGRSGLL EA + I SMP+ AD +VW  L  ACR+HGN 
Sbjct: 581 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 640

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
            +G  AA  +LE +P D   Y+LL+N++  +  W++  K+RK M+ER + K  GCS IEV
Sbjct: 641 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 700

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLT 585
              ++ F V + SHP+  QIY  L QL 
Sbjct: 701 ENRVHRFHVGETSHPQAWQIYQELDQLA 728



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 213/446 (47%), Gaps = 48/446 (10%)

Query: 36  FNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR 95
            +++NPN       +   L+ G++  A      M +     PD  TY +L K C      
Sbjct: 2   LSLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAP-PDLTTYSILLKSCIRFRNF 60

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLING 154
            LG  +   +++ G ++D  V N +I ++  CGD   A  +F+     R+LVSW+++++ 
Sbjct: 61  QLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSC 120

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTL 213
           F  +    +AI  F DM      P+E     ++ AC+      +G  I+ ++ ++G L  
Sbjct: 121 FANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEA 180

Query: 214 TVPLANALMDMYVK-CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            V +   L+DM+VK  G L SA ++FD M  + +V+ T MI  +A+ G            
Sbjct: 181 DVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC----------- 229

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                               +++A+ LF +M+ +G  PD  T    LSAC++LG L  G 
Sbjct: 230 --------------------ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGK 269

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKC---GNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            +H  + +    L+V +G +LVDMYAKC   G++  + +VF +MPE N +++TAII    
Sbjct: 270 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYV 329

Query: 390 LHGKA-LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
             G+   +AI  F +MI   + P+  +F  +L AC  G L D    Y  +    + +   
Sbjct: 330 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSD---PYTGEQVYSYAVKLG 384

Query: 449 LKHYSC----MVDLLGRSGLLEEAEQ 470
           +   +C    ++ +  RSG +E+A +
Sbjct: 385 IASVNCVGNSLISMYARSGRMEDARK 410



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 193/382 (50%), Gaps = 37/382 (9%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM-REAVDLYKQMLRNGG 74
           + A CA   S  +D   K+   +   N  SW   I  ++++G+  +EA++L+ +M+ +G 
Sbjct: 293 MYAKCAADGS--VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGH 349

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            RP++F++  + K C +L   + G +++ + +KLG      V N++I ++   G +  A 
Sbjct: 350 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 409

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             FD    +NLVS+N++++G+ ++    EA  LF ++    +     T   ++S  A + 
Sbjct: 410 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 469

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            +  G +IH  + + G      + NAL+ MY +CG +E+A ++F+ M ++ V+S T+MI 
Sbjct: 470 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 529

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G+AK GF                               +  AL +FH+M  TG KP+ +T
Sbjct: 530 GFAKHGF-------------------------------ATRALEMFHKMLETGTKPNEIT 558

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEM 373
            V  LSACS +G + +G      + KE+  +  +   A +VD+  + G + +A++  + M
Sbjct: 559 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 618

Query: 374 P-ERNSLTYTAIIGGLALHGKA 394
           P   ++L +  ++G   +HG  
Sbjct: 619 PLMADALVWRTLLGACRVHGNT 640



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 3/195 (1%)

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R   A +    M      PD  T    L +C +      G  +HR + +    L+ V+  
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 352 ALVDMYAKCGNIAKALQVFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            L+ +Y+KCG+   A  +F  M  +R+ ++++A++   A +     AI  F +M+ +G  
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEEAE 469
           P+E  F  ++ AC +      G   +  +     L   +     ++D+  + SG L  A 
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 203

Query: 470 QLIRSMPMAADVVVW 484
           ++   MP   ++V W
Sbjct: 204 KVFDKMP-ERNLVTW 217


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/632 (33%), Positives = 329/632 (52%), Gaps = 71/632 (11%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++   ++     N +  SWNV I G+   G  +EA +L+  +++  G  PD FT+  + 
Sbjct: 94  SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLF-TLMQQEGLEPDKFTFVSIL 152

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C+S      G E+   V++ G   +  V NA+I ++  CG +  A  VFD    R+ V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW +L   +  SG+ +E+++ +  M  E V P  +T + ++SAC  L  L  G++IH  I
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272

Query: 207 SESGLTLTVPLANALMDMYVKC-------------------------------GKLESAE 235
            ES     V ++ AL  MY+KC                               G+LE A 
Sbjct: 273 VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAH 332

Query: 236 EIFDSMVNKTV-------------------VSC--------------------TTMIVGY 256
            +F  M+ + V                   ++C                      +I  Y
Sbjct: 333 GMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMY 392

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           +K G +  AR++FD +P++ VV W A++GGY    +  E+ + F +M   G++ + +T +
Sbjct: 393 SKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYM 452

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             L ACS   AL  G  IH  + K     ++ +  AL+ MY KCG++  A++V   M  R
Sbjct: 453 CVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR 512

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + +T+  +IGGLA +G+ L+A+  F  M    + P+  TF+ ++SAC    LV+EGR+ F
Sbjct: 513 DVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQF 572

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           A M   + + P  KHY+CMVD+L R+G L EAE +I +MP      +WGAL  ACR HGN
Sbjct: 573 ASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGN 632

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           V IGE+AA + L+L+PQ++G YV L+ +Y  + MW +  K+RK+M+ERGV+K PG S IE
Sbjct: 633 VEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIE 692

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           V G ++ F+  D+SHP  E+IY  L  LT+  
Sbjct: 693 VAGEVHSFVAGDQSHPRTEEIYSELEALTKQI 724



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 223/420 (53%), Gaps = 33/420 (7%)

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           Q L   G++ D++ Y  L + C       +G ++  H+L+ G   ++Y+ N ++ ++V C
Sbjct: 33  QYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC 92

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G +  A  +FD+   +++VSWN +I+G+   G  +EA  LF  MQ E +EPD+ T + ++
Sbjct: 93  GSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SAC+    LN GRE+H  + E+GL     + NAL+ MY KCG +  A  +FD+M ++  V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S TT+   YA+ G+                               ++E+L  +H M   G
Sbjct: 213 SWTTLTGAYAESGY-------------------------------AQESLKTYHAMLQEG 241

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++P  +T ++ LSAC  L AL+ G  IH  I +   + +V + TAL  MY KCG +  A 
Sbjct: 242 VRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAR 301

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF  +P R+ + +  +IGGL   G+  +A   F  M+   + PD +T+L ILSAC   G
Sbjct: 302 EVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPG 361

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +  G++  A+      +S  ++  + ++++  ++G +++A Q+   MP   DVV W AL
Sbjct: 362 GLACGKEIHARAVKDGLVS-DVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTAL 419


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/547 (37%), Positives = 309/547 (56%), Gaps = 47/547 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQML---RNGGTRPDNFTYPLLFKVCASLGLRFL- 97
           ++  +N  I     +G+   A   +  +L   R    RPD +T P   K CA LG     
Sbjct: 67  SAHPFNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAGGDD 126

Query: 98  -----GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G ++     K GF   + V NA++ ++  CG+ G A  VFDE   R++VSW +L+
Sbjct: 127 GGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTALV 186

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH-WYIS-ESG 210
           + FVR G   EA+ L   M    V P+E T+  ++ AC +L     G+ +H WY+  ES 
Sbjct: 187 SAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRESD 243

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L L V   NA++DMYVKC KL                               D+AR++FD
Sbjct: 244 LKLIV--GNAVLDMYVKCEKL-------------------------------DLARRVFD 270

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            L  + V+ W  +I G VQ K   +AL +F+EMQ + +KPD V     LSAC+ LGAL+ 
Sbjct: 271 RLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALES 330

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G W+H +IE++    +V +GT+LVDMYAKCG +  +L +F +MP +N  ++ A+I G AL
Sbjct: 331 GRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFAL 390

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG   +A+ +F  M+  GL P+E++F+ +L ACCH GLV EG + F  M + ++LSP  +
Sbjct: 391 HGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEE 450

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY  +VDLLGR+GL+ EA  + ++MPM   V  WGAL  AC+ H  V   ++    + EL
Sbjct: 451 HYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHEL 510

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +  +SG+Y LL+N+Y  ++ W +  +VR +M E+G++K PG S IEVNG   EF+V  K+
Sbjct: 511 ESSESGVYALLSNIYAVNHRWADVKRVRGLMSEKGLQKEPGSSVIEVNGKTSEFVVGQKN 570

Query: 571 HPELEQI 577
           H  +++I
Sbjct: 571 HKNVDEI 577


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 323/584 (55%), Gaps = 36/584 (6%)

Query: 3   ITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           I G  S+ F  S L+  +C  S    + Y  K+   +   ++  WN  I G ++     +
Sbjct: 136 IDGYGSNVFVGSALVDLYCKFSR---VVYARKVFDGMPERDTVLWNTMINGLVKNCCFDD 192

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           ++ L+++M+ +G  R D+ T   +    A L    +G  I    LK+GF    YV   +I
Sbjct: 193 SIQLFREMVADG-VRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLI 251

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CGD+  A  +F      +L+++N++I+GF  +G    +++LFR++          
Sbjct: 252 SLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSS 311

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T++G++   +    L+L   IH +  +SG+ L                            
Sbjct: 312 TIVGLIPLHSPFGHLHLACSIHGFCVKSGIIL---------------------------- 343

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
            N TV +  T I  Y K   +D+AR +FD+ PEK VV WNA+I GY Q   ++ A++LF 
Sbjct: 344 -NPTVSTAFTAI--YNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFK 400

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM  T   P+AVT    LSAC+QLG+L  G W+H  I+ EN   N+ + TALVDMYAKCG
Sbjct: 401 EMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCG 460

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           NI++A Q+F  M E+N++T+  +I G  LHG   +A+  ++EM+ +G  P  +TFL +L 
Sbjct: 461 NISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLY 520

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLV EG + F  M + +R+ P ++HY+CMVD+LGRSG LE+A + I+ MP+    
Sbjct: 521 ACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGP 580

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            VWG L  AC +H +  I   A+ +L ELDP   G YVLL+N+Y     + +A  +R+++
Sbjct: 581 AVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVV 640

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           ++R + K+PGC+ IEVNG  + F+  D+SH     IY  L +LT
Sbjct: 641 KKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLT 684



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 206/462 (44%), Gaps = 36/462 (7%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           + F+V  P+ F +NV +RGF        ++ LY  + RN    PDNFTY      C++  
Sbjct: 66  LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDK 125

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              L   +  H +  G+  +++V +A++ ++     +  A  VFD    R+ V WN++IN
Sbjct: 126 HLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMIN 182

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G V++    ++I+LFR+M  + V  D  T+  ++ A A+L++L +G  I     + G   
Sbjct: 183 GLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGF 242

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              +   L+ +Y KCG + +A  +F  +    +++   MI G+   G  + + K      
Sbjct: 243 CDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVK------ 296

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                                    LF E+  +G +  + T V  +   S  G L     
Sbjct: 297 -------------------------LFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACS 331

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH F  K    LN  + TA   +Y K   I  A  +F E PE+  + + A+I G   +G 
Sbjct: 332 IHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGS 391

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
              AIS F EM+     P+ +T   ILSAC   G +  G K+   +     L P +   +
Sbjct: 392 TETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVST 450

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +VD+  + G + EA QL  SM    + V W  + F   LHG
Sbjct: 451 ALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLHG 491



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 198/473 (41%), Gaps = 80/473 (16%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +N L+ GF  +  P  +I L+  ++    + PD  T    V+AC+  + L L   +H + 
Sbjct: 78  FNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHS 134

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
              G    V + +AL+D+Y                                KF  +  AR
Sbjct: 135 IIDGYGSNVFVGSALVDLY-------------------------------CKFSRVVYAR 163

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           K+FD +PE+  V WN +I G V+     +++ LF EM A G++ D+ T    L A ++L 
Sbjct: 164 KVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQ 223

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            L  G+ I     K  F     + T L+ +Y+KCG++  A  +F  +   + + Y A+I 
Sbjct: 224 ELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMIS 283

Query: 387 GLALHGKALDAISYFSEMIG----------VGLMPDEITFLGILSACC-HGGLVDEGRKY 435
           G   +G    ++  F E++           VGL+P    F  +  AC  HG  V  G   
Sbjct: 284 GFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIIL 343

Query: 436 FAQMSS-----------------IFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM- 475
              +S+                 +F  SP+  +  ++ M+    ++G  E A  L + M 
Sbjct: 344 NPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMM 403

Query: 476 --PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV--LLANMYRDSNMW 531
                 + V    +  AC   G++S G +    L++ +  +  IYV   L +MY      
Sbjct: 404 KTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNI 462

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            EA ++   M E+        +++  N +++ + +    H  L ++Y+ ++ L
Sbjct: 463 SEAWQLFDSMSEK--------NTVTWNTMIFGYGLHGYGHEAL-KLYNEMLHL 506


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/440 (42%), Positives = 276/440 (62%), Gaps = 9/440 (2%)

Query: 148 WNSLINGFVR-----SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           WN+LI   V+     +G     I +F  M+   V+PD  T   ++ + A    L+LGR +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  I   GL +   +  +L+ MY  CG L  A ++FD +    + S  ++I    + G +
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI---KPDAVTTVHCL 319
           D+AR +F  +PE+ V+ W+ +I GYV+  + KEALALF EMQ  G+   +P+  T    L
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM-PERNS 378
           +AC +LGAL+ G W H +I+K    ++VVLGTAL+DMYAKCG++ KA  VF  + P ++ 
Sbjct: 207 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 266

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + ++A+I GLA+HG A + +  FS+MI  G+ P+ +TFL +  AC HGGLV EG+ Y  +
Sbjct: 267 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 326

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+  + + P ++HY CMVDL GR+G ++EA  +++SMPM  DV+VWGAL    R+HG++ 
Sbjct: 327 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
             E A  KL+EL+P +SG YVLL+N+Y     WE+   VR +ME  G++K PGCS IEV 
Sbjct: 387 TCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 446

Query: 559 GLLYEFIVRDKSHPELEQIY 578
           G+L+EF V D SHPE  QI+
Sbjct: 447 GVLHEFFVGDDSHPETRQIH 466



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 196/422 (46%), Gaps = 84/422 (19%)

Query: 13  PSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLE-----TGKMREAVDLYK 67
           P+RLI+    S    L +    L       SF WN  IR  ++     TG     + ++ 
Sbjct: 4   PTRLIS----STHPTLHFSHPTL------ESFLWNTLIRAHVQARAQPTGPTHSPISIFV 53

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           +M R  G +PD  T+P L +  AS  L  LG  +   +L+ G  +D +V  ++I ++ SC
Sbjct: 54  RM-RFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSC 112

Query: 128 GDLGLACNVFDESCVRNLVSWNS-------------------------------LINGFV 156
           G+LG A  VFDE    +L SWNS                               +ING+V
Sbjct: 113 GNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYV 172

Query: 157 RSGFPREAIRLFRDMQL---ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           R G  +EA+ LFR+MQ+     V P+E TM G+++AC +L  L  G+  H YI + G+ +
Sbjct: 173 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV 232

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            V L  AL+DMY KCG +E A  +F ++  NK V++ + MI G A  G            
Sbjct: 233 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGL----------- 281

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                               ++E + LF +M   G++P+AVT +    AC   G + +G 
Sbjct: 282 --------------------AEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 321

Query: 333 -WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            ++ R  E  +    +     +VD+Y + G I +A  V   MP E + L + A++ G  +
Sbjct: 322 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 381

Query: 391 HG 392
           HG
Sbjct: 382 HG 383


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 322/567 (56%), Gaps = 13/567 (2%)

Query: 32   TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
             + LF+ + +P+  S+N  I    +  +  +A+ L+   +       + +++      CA
Sbjct: 845  ARALFHAIPDPDQCSYNAVIAALAQHSRGADAL-LFLAAMHADDFVLNAYSFASALSACA 903

Query: 91   SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            +      G ++   V K     D+Y+ +A++ ++  C     A  VF+    RN+VSWNS
Sbjct: 904  AEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNS 963

Query: 151  LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
            LI  + ++G   EA+ LF  M      PDEVT+  ++SACA L     GR++H  + +S 
Sbjct: 964  LITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSD 1023

Query: 211  -LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
                 + L+NAL+DMY KCG+  +A  +FD M +++VVS T++I GYA+   ++ A+ +F
Sbjct: 1024 RFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVF 1083

Query: 270  DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
              + EK V+ WN +I  Y Q    +EAL LF  ++   + P   T  + L+AC  +  L 
Sbjct: 1084 SQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQ 1143

Query: 330  DGIWIHRFIEKENFNLN------VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
             G   H  + KE F  +      V +G +LVDMY K G+I    +VF  M  R+++++ A
Sbjct: 1144 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 1203

Query: 384  IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
            +I G A +G+A DA+  F  M+     PD +T +G+LSAC H GLV+EGR+YF  M+   
Sbjct: 1204 MIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDH 1263

Query: 444  RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
             + P   HY+CM+DLLGR+G L+E E+LI+ M M  D V+W +L  +CRLH NV +GE A
Sbjct: 1264 GIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWA 1323

Query: 504  AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
            A KL ELDP++SG YVLL+NMY +   W +  +VR  M+ RGV K PGCS IE+   +  
Sbjct: 1324 AGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSV 1383

Query: 564  FIVRDKSHPELEQIYDCL----VQLTR 586
            F+ RD  HP   +I+  L    +Q++R
Sbjct: 1384 FLARDNGHPCKNEIHAILRIIQMQMSR 1410



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 162/558 (29%), Positives = 265/558 (47%), Gaps = 68/558 (12%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++  PN+ SWNV +R +   G    AVD++ +ML + G RP  +T       C       
Sbjct: 211 DILEPNAISWNVIVRRYHLAGMGDMAVDMFFRML-SAGVRPLGYTVSHAVLACRDNNALE 269

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD-----------------E 139
            G  I   VL+ G++  ++V ++V+ ++  CG +  A ++F+                  
Sbjct: 270 EGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLA 329

Query: 140 SC--------------VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
           SC               RNLVSWN+++ G++RS     A+ LF+ M+ E  E D +T+  
Sbjct: 330 SCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGS 389

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++SAC  + D+  G E+H +  + G   +  L NAL+ MY KCG L SAE +        
Sbjct: 390 VLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL------- 442

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                                 +F+   E+    WN++I GY +   S+ AL    +MQ+
Sbjct: 443 ----------------------LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS 480

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
             + P+  T    L+AC+ +  L  G+ IH ++ ++ + ++ +L + L+DMY KC     
Sbjct: 481 E-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDY 539

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           ++++F   P R+ + + ++I G A  GK    +  F EM   G+  D +TFLG L +C  
Sbjct: 540 SIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCIS 599

Query: 426 GGLVDEGRKYFAQM--SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            G V  GR YF  M   SI    P+++HY CM++LLG+ G + E E  +  MP      +
Sbjct: 600 EGHVRLGRSYFTLMMDESII---PRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAM 656

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  +F  CR +GN  +GERAA  + + +P     +V   + Y  ++   EA       E 
Sbjct: 657 WLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFVATVD-YESNDGGREAESTSFSSEG 715

Query: 544 RGVEKTPGCSSIEVNGLL 561
            G E+ P     E +G L
Sbjct: 716 EGCEELPFSLEGEASGSL 733



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 230/459 (50%), Gaps = 8/459 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I      G   EA+ L+  M  + G RP + T   +   CA         ++ GH
Sbjct: 118 SWNAIITASSRAGHPSEALSLFSNM-NSLGIRPKDATMASVLSCCAECLDLCGARQLHGH 176

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           + K  F  ++ +  A++ V+ +C  L  A   FD+    N +SWN ++  +  +G    A
Sbjct: 177 IAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMA 236

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +F  M    V P   T+   V AC     L  GR IH ++   G    V + ++++DM
Sbjct: 237 VDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDM 296

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG +++A+ +F+    K +V  T+++ G A  G +  A+++F+ + E+ +V WNA++
Sbjct: 297 YAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAML 356

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY+++     AL LF +M+    + DA+T    LSAC+ +  +  G  +H F  K  F 
Sbjct: 357 TGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFF 416

Query: 345 LNVVLGTALVDMYAKCGNI--AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            + +L  ALV MY+KCG +  A+ L +F    ER+S ++ ++I G   H  +  A+   +
Sbjct: 417 SSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALT 476

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGR 461
           +M    + P++ TF   L+AC +  L+ +G +  A M    + +   L+  S ++D+  +
Sbjct: 477 KMQS-EVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILR--SVLIDMYCK 533

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
               + + ++  + P + DV++W ++ F C   G    G
Sbjct: 534 CRQFDYSIRIFEARP-SRDVILWNSMIFGCAYSGKGEYG 571



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 189/447 (42%), Gaps = 71/447 (15%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
           V  ++ N  I    +CG +  A  +FD   +R+  SWN++I    R+G P EA+ LF +M
Sbjct: 83  VPTFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNM 142

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
               + P + TM  ++S CA+  DL   R++H +I++      V L  AL+D+Y  C  L
Sbjct: 143 NSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLL 202

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
             A   FD ++    +S                               WN I+  Y  A 
Sbjct: 203 ADARRAFDDILEPNAIS-------------------------------WNVIVRRYHLAG 231

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
               A+ +F  M + G++P   T  H + AC    AL++G  IH F+ +  +  +V + +
Sbjct: 232 MGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRS 291

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ++VDMYAKCG +  A  +F+  P ++ +  T+I+ GLA  G+  DA   F  M    L+ 
Sbjct: 292 SVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVS 351

Query: 412 -------------------------------DEITFLGILSACCHGGLVDEGRKYFAQMS 440
                                          D IT   +LSAC   G++D G+       
Sbjct: 352 WNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT--GILDIGKGEEVHAF 409

Query: 441 SI---FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR-SMPMAADVVVWGALFFACRLHGN 496
           +I   F  SP LK+   +V +  + G L  AE+L+   M    D   W +L      H  
Sbjct: 410 AIKCGFFSSPILKN--ALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSM 467

Query: 497 VSIGERAAMKLL-ELDPQDSGIYVLLA 522
                 A  K+  E+ P  S     LA
Sbjct: 468 SEAALYALTKMQSEVTPNQSTFSSALA 494



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/526 (24%), Positives = 211/526 (40%), Gaps = 132/526 (25%)

Query: 106  LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            LK  F  + ++ N ++  +   G L  A  VFDE    N  S+N+L++   R G P +A 
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 166  RLFRDMQLERVEPDEVTMIGMV-----------------------------------SAC 190
             LF  +     +PD+ +   ++                                   SAC
Sbjct: 847  ALFHAIP----DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSAC 902

Query: 191  AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            A  +D   G ++H  +S+S     V + +AL+DMY KC   E A  +F++M  + +VS  
Sbjct: 903  AAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVS-- 960

Query: 251  TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                         WN++I  Y Q     EAL LF  M   G  P
Sbjct: 961  -----------------------------WNSLITCYEQNGPVGEALVLFVSMMKAGFVP 991

Query: 311  DAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYAKCG-------- 361
            D VT    +SAC+ L A  +G  +H R ++ + F  ++VL  ALVDMYAKCG        
Sbjct: 992  DEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCV 1051

Query: 362  -----------------------NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
                                   N+  A  VF +M E+N + +  +I   A +G+  +A+
Sbjct: 1052 FDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEAL 1111

Query: 399  SYFSEMIGVGLMPDEITFLGILSAC-----------CHGGLVDEGRKY-FAQMSSIFRLS 446
              F  +    + P   T+  +L+AC            H  ++ EG ++ F   S +F   
Sbjct: 1112 RLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFV-- 1169

Query: 447  PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
                  + +VD+  ++G +++  ++   M  A D V W A+      +G      + A+ 
Sbjct: 1170 -----GNSLVDMYLKTGSIDDGAKVFERMA-ARDNVSWNAMIVGHAQNGRA----KDALH 1219

Query: 507  LLEL-----DPQDSGIYVLLANMYRDSNMWEEAGK-VRKMMEERGV 546
            L E      +  DS   + + +    S + EE  +  R M E+ G+
Sbjct: 1220 LFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGI 1265



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 35/344 (10%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   ++  N  SWN  + G++ +  +  A+ L++QM R      D  T   +   C  +
Sbjct: 339 RVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQM-RQETREFDAITLGSVLSACTGI 397

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN--VFDESCVRNLVSWNS 150
                G E+    +K GF     + NA++ ++  CG L  A    +F+    R+  SWNS
Sbjct: 398 LDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNS 457

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           LI+G+ R      A+     MQ E V P++ T    ++ACA +  L  G +IH Y+   G
Sbjct: 458 LISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKG 516

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
             +   L + L+DMY KC + + +  IF++  ++ V+   +MI G A  G          
Sbjct: 517 YEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSG---------- 566

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                                + +  L LF EMQ  GIK D+VT +  L +C   G +  
Sbjct: 567 ---------------------KGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRL 605

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
           G      +  E+    +     ++++  K G + +       MP
Sbjct: 606 GRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMP 649


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 303/520 (58%), Gaps = 33/520 (6%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC--GDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           ++    L+ G   D YV   ++  + +    +L  A  VF+     N+  +N +I G ++
Sbjct: 48  QVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQ 107

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +  P +AI  +  M +    P++ T   +  AC   E    G ++H ++ + GL+  V +
Sbjct: 108 NNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHI 167

Query: 218 A-------------------------------NALMDMYVKCGKLESAEEIFDSMVNKTV 246
                                           NA++D Y+KCG++E+A+E+F SM +K V
Sbjct: 168 RSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNV 227

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            S   M+ G AK G ++ AR++F+++ EK  + W+A+I GY++    KEAL +F+ MQ  
Sbjct: 228 GSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQRE 287

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
            I+P        L+AC+ LGALD G WIH ++   + + + VLGTALVDMYAKCG +  A
Sbjct: 288 EIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMA 347

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
             VF +M ++   T+ A+I GL +HG+A DAI  F +M      P+ IT LG+LSAC H 
Sbjct: 348 WDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHS 407

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G+VDEG + F  M  ++ + P ++HY C+VDLLGR+GLL EAE+++ SMPM     VWGA
Sbjct: 408 GMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGA 467

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR HG+V +GER    LLEL+PQ+SG Y LL+N+Y  +  W++   VRK+M+ERGV
Sbjct: 468 LLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGV 527

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           + + G S I+ +G+++EF + D SHP+++ IY  L  + +
Sbjct: 528 KTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIK 567



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 204/454 (44%), Gaps = 98/454 (21%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG     +    L+   A     NL++  K+   V NPN F +N+ I+G L+  +  +A+
Sbjct: 56  TGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAI 115

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH------ 117
             Y +M+     RP+ FTYP LFK C +      G ++  HV+K G   D+++       
Sbjct: 116 CCYYKMMI-AHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQM 174

Query: 118 -------------------------NAVIHVFVSCGDLGLACNVFDESCVRNLVSWN--- 149
                                    NA+I  ++ CG++  A  +F     +N+ SWN   
Sbjct: 175 YGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMV 234

Query: 150 ----------------------------SLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
                                       ++I+G+++ G+ +EA+ +F  MQ E + P + 
Sbjct: 235 SGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKF 294

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            +  +++ACA L  L+ GR IH Y++ +  +    L  AL+DMY KCG+L+ A ++F+ M
Sbjct: 295 VLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKM 354

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K V +                               WNA+I G     R+++A+ LF 
Sbjct: 355 EKKEVFT-------------------------------WNAMICGLGMHGRAEDAIELFF 383

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAK 359
           +MQ    +P+ +T +  LSAC+  G +D+G+ I   +E E + +   +     +VD+  +
Sbjct: 384 KMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSME-EVYGIEPGMEHYGCVVDLLGR 442

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            G + +A +V + MP E ++  + A++G    HG
Sbjct: 443 AGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 11/283 (3%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LFN ++  N  SW+  I G+++ G  +EA++++  M R    RP  F    +   CA+LG
Sbjct: 249 LFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREE-IRPRKFVLSSVLAACANLG 307

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G  I  +V       D  +  A++ ++  CG L +A +VF++   + + +WN++I 
Sbjct: 308 ALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMIC 367

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-SGLT 212
           G    G   +AI LF  MQ ++  P+ +T++G++SACA    ++ G  I   + E  G+ 
Sbjct: 368 GLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIE 427

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA-KFGFLDIARKIFDD 271
             +     ++D+  + G L  AEE+  SM  +   +    ++G   K G +++  ++   
Sbjct: 428 PGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKI 487

Query: 272 LPEKYVVPWNA-----IIGGYVQAKRSKEALALFHEMQATGIK 309
           L E  + P N+     +   Y +A R  +   +   M+  G+K
Sbjct: 488 LLE--LEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVK 528


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/516 (37%), Positives = 308/516 (59%), Gaps = 42/516 (8%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCG-----DLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +L+ G   D Y+  +++  + +           +  VFD     N+  WN +I   + + 
Sbjct: 57  ILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENN 116

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-------- 211
            P +AI L+ +M +    P++ T   ++ AC+    +  G ++H ++ + GL        
Sbjct: 117 EPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILS 176

Query: 212 ------------------------TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
                                    +     NA++D Y++ G++E+A E+F+ M +++++
Sbjct: 177 SAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMI 236

Query: 248 SC-TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           S    MI G+++ G +++AR+ FD++ E+  + W+A+I GY+Q     EAL +FH+MQ  
Sbjct: 237 STWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKE 296

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
            I+P        LSAC+ LGALD G WIH + ++ +  L+ VLGT+LVDMYAKCG I  A
Sbjct: 297 KIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLA 356

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            +VF +M  +   ++ A+IGGLA+HG+A DAI  FS+M    + P+EITF+G+L+AC HG
Sbjct: 357 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHG 413

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV +G   F  M   + + P+++HY C+VDLLGR+GLL EAE+++ S+P      VWGA
Sbjct: 414 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 473

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR HGNV +GER    LLEL+PQ+SG Y LL+N+Y  +  WEE G+VRK+M+ERG+
Sbjct: 474 LLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 533

Query: 547 EKTPGCSSIEV-NGLLYEFIVRDKSHPELEQIYDCL 581
           + TPG S I++  G +++FI+ D SHP+++ IY  L
Sbjct: 534 KTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQML 569



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 199/458 (43%), Gaps = 104/458 (22%)

Query: 4   TGLISHGFAPSRLI-AFCAISESKNLDYCTKI-LFN-VQNPNSFSWNVAIRGFLETGKMR 60
           TG +   +    L+ ++  +S ++ L + + + +F+ V+ PN F WN  I+  +E  +  
Sbjct: 60  TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPF 119

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ LY +M+     RP+ +TYP + K C+  G+   G ++  H++K G   D ++ ++ 
Sbjct: 120 KAILLYYEMMV-AHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSA 178

Query: 121 IHVFVSCGDLGLACNVFDESCVR-NLVSWNSLINGFVR---------------------- 157
           I ++ S G L  A  + D+     + V WN++I+G++R                      
Sbjct: 179 IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIST 238

Query: 158 -----SGFPR----EAIRLFRDMQLER--------------------------------V 176
                SGF R    E  R F D   ER                                +
Sbjct: 239 WNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKI 298

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P +  +  ++SACA L  L+ GR IH Y   + + L   L  +L+DMY KCG+++ A E
Sbjct: 299 RPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE 358

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F+ M NK V S                               WNA+IGG     R+++A
Sbjct: 359 VFEKMSNKEVSS-------------------------------WNAMIGGLAMHGRAEDA 387

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVD 355
           + LF +M    I P+ +T V  L+AC+  G +  G+ I   + KE      +     +VD
Sbjct: 388 IDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 444

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           +  + G + +A +V   +P E     + A++G    HG
Sbjct: 445 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHG 482



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 104/290 (35%), Gaps = 64/290 (22%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++   + N    SWN  I G    G+  +A+DL+ +M  N    P+  T+  +  
Sbjct: 353 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN----PNEITFVGVLN 408

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA  GL   G  IF  + K                     + G+   +    C+ +L+ 
Sbjct: 409 ACAHGGLVQKGLTIFNSMRK---------------------EYGVEPQIEHYGCIVDLLG 447

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
                    R+G   EA ++   +     EP       ++ AC +  ++ LG  +     
Sbjct: 448 ---------RAGLLTEAEKVVSSIP---TEPTPAVWGALLGACRKHGNVELGERV----- 490

Query: 208 ESGLTLTVPLANA-----LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
              + L +   N+     L ++Y K G+ E   E+   M  + +   TT        G  
Sbjct: 491 -GKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIK--TTPGTSIIDLGRG 547

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE-MQATGIKPD 311
           ++ + I  D             G + Q K   + L    E +Q  G +PD
Sbjct: 548 EVHKFIIGD-------------GSHPQVKDIYQMLDKVKERLQMEGYEPD 584


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 315/537 (58%), Gaps = 34/537 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N  SWN  I  F   GK  +A+D+++ M+ + G RP++ T   +  V   L
Sbjct: 297 KVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMI-DEGMRPNSVTISSMLPVLGEL 355

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           GL  LG E+ G  LK+  + D+++ N++I ++   G   +A  +F++  VRN+VSWN++I
Sbjct: 356 GLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMI 415

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             F R+    EA+ L R MQ +   P+ VT   ++ ACA+L  LN+G+EIH  I   G +
Sbjct: 416 ANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSS 475

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L + ++NAL DMY KCG                   C            L++A+ +F+ +
Sbjct: 476 LDLFVSNALTDMYSKCG-------------------C------------LNLAQNVFN-I 503

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             +  V +N +I GY +   S E+L LF EM+  G++PD V+ +  +SAC+ L  +  G 
Sbjct: 504 SVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGK 563

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  + ++ F+ ++ +  +L+D+Y +CG I  A +VF+ +  ++  ++  +I G  + G
Sbjct: 564 EIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRG 623

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +   AI+ F  M   G+  D ++F+ +LSAC HGGL+++GRKYF  M  +  + P   HY
Sbjct: 624 ELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDL-NIEPTHTHY 682

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR+GL+EEA  LIR + +  D  +WGAL  ACR+HGN+ +G  AA  L EL P
Sbjct: 683 ACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKP 742

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           Q  G Y+LL+NMY ++  W+EA KVR++M+ RG +K PGCS ++V  L++ F+V +K
Sbjct: 743 QHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEK 799



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 234/475 (49%), Gaps = 49/475 (10%)

Query: 9   HGFAPSRLIAFCA--ISESKNLDYCTKILFNVQNP-----NSFSWNVAIRGFLETGKMRE 61
           HGF P R ++ CA  I +  +  + +  L   Q+      ++F WN  IR     G + +
Sbjct: 63  HGFLP-RSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAG-VFD 120

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
               Y  M+R  G +PD  TYP + KVC+       G E+ G   KLGFD D++V N ++
Sbjct: 121 GFGTYNTMVR-AGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLL 179

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--VEPD 179
             + +CG  G A  VFDE   R+ VSWN++I      GF  EA+  FR M   +  ++PD
Sbjct: 180 AFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPD 239

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIF 238
            VT++ ++  CA+ ED  + R +H Y  + GL    V + NAL+D+Y KCG  +++    
Sbjct: 240 LVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKAS---- 295

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                                      +K+FD++ E+ V+ WNAII  +    +  +AL 
Sbjct: 296 ---------------------------KKVFDEIDERNVISWNAIITSFSFRGKYMDALD 328

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           +F  M   G++P++VT    L    +LG    G+ +H F  K     +V +  +L+DMYA
Sbjct: 329 VFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYA 388

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           K G+   A  +F++M  RN +++ A+I   A +    +A+    +M   G  P+ +TF  
Sbjct: 389 KSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTN 448

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQL 471
           +L AC   G ++ G++  A+   I R+   L  +  + + D+  + G L  A+ +
Sbjct: 449 VLPACARLGFLNVGKEIHAR---IIRVGSSLDLFVSNALTDMYSKCGCLNLAQNV 500



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 6/266 (2%)

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD--LPEKYVVPWNAIIGGYVQAK 291
           A  +    + ++V  C ++I+ YA FG    +  +F       +    WN +I     A 
Sbjct: 58  AYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAG 117

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
              +    ++ M   G+KPD  T    L  CS    +  G  +H    K  F+ +V +G 
Sbjct: 118 -VFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGN 176

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV--GL 409
            L+  Y  CG    A++VF EMPER+ +++  +IG  +LHG   +A+ +F  M+    G+
Sbjct: 177 TLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGI 236

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD +T + +L  C         R        +  L   +K  + +VD+ G+ G  E+A 
Sbjct: 237 QPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCG-SEKAS 295

Query: 470 QLIRSMPMAADVVVWGALFFACRLHG 495
           + +       +V+ W A+  +    G
Sbjct: 296 KKVFDEIDERNVISWNAIITSFSFRG 321



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D  TK+ + +QN +  SWN  I G+   G++  A++L++ M +  G   D+ ++  +  
Sbjct: 594 IDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAM-KEDGVEYDSVSFVAVLS 652

Query: 88  VCASLGLRFLGYEIF 102
            C+  GL   G + F
Sbjct: 653 ACSHGGLIEKGRKYF 667


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/516 (37%), Positives = 308/516 (59%), Gaps = 42/516 (8%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCG-----DLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +L+ G   D Y+  +++  + +           +  VFD     N+  WN +I   + + 
Sbjct: 58  ILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENN 117

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-------- 211
            P +AI L+ +M +    P++ T   ++ AC+    +  G ++H ++ + GL        
Sbjct: 118 EPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILS 177

Query: 212 ------------------------TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
                                    +     NA++D Y++ G++E+A E+F+ M +++++
Sbjct: 178 SAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMI 237

Query: 248 SC-TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           S    MI G+++ G +++AR+ FD++ E+  + W+A+I GY+Q     EAL +FH+MQ  
Sbjct: 238 STWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKE 297

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
            I+P        LSAC+ LGALD G WIH + ++ +  L+ VLGT+LVDMYAKCG I  A
Sbjct: 298 KIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLA 357

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            +VF +M  +   ++ A+IGGLA+HG+A DAI  FS+M    + P+EITF+G+L+AC HG
Sbjct: 358 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHG 414

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV +G   F  M   + + P+++HY C+VDLLGR+GLL EAE+++ S+P      VWGA
Sbjct: 415 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 474

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR HGNV +GER    LLEL+PQ+SG Y LL+N+Y  +  WEE G+VRK+M+ERG+
Sbjct: 475 LLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 534

Query: 547 EKTPGCSSIEV-NGLLYEFIVRDKSHPELEQIYDCL 581
           + TPG S I++  G +++FI+ D SHP+++ IY  L
Sbjct: 535 KTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQML 570



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 200/458 (43%), Gaps = 104/458 (22%)

Query: 4   TGLISHGFAPSRLI-AFCAISESKNLDYCTKI-LFN-VQNPNSFSWNVAIRGFLETGKMR 60
           TG +   +    L+ ++  +S ++ L + + + +F+ V+ PN F WN  I+  +E  +  
Sbjct: 61  TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPF 120

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ LY +M+    +RP+ +TYP + K C+  G+   G ++  H++K G   D ++ ++ 
Sbjct: 121 KAILLYYEMVV-AHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSA 179

Query: 121 IHVFVSCGDLGLACNVFDESCVR-NLVSWNSLINGFVR---------------------- 157
           I ++ S G L  A  + D+     + V WN++I+G++R                      
Sbjct: 180 IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIST 239

Query: 158 -----SGFPR----EAIRLFRDMQLER--------------------------------V 176
                SGF R    E  R F D   ER                                +
Sbjct: 240 WNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKI 299

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P +  +  ++SACA L  L+ GR IH Y   + + L   L  +L+DMY KCG+++ A E
Sbjct: 300 RPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE 359

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F+ M NK V S                               WNA+IGG     R+++A
Sbjct: 360 VFEKMSNKEVSS-------------------------------WNAMIGGLAMHGRAEDA 388

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVD 355
           + LF +M    I P+ +T V  L+AC+  G +  G+ I   + KE      +     +VD
Sbjct: 389 IDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 445

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           +  + G + +A +V   +P E     + A++G    HG
Sbjct: 446 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHG 483


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 311/560 (55%), Gaps = 34/560 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K+  ++   +  SWN  I GF + G    A+ +  +M +  G + D  T   +  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM-KGEGVKMDTITVASILP 230

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           VCA       G  I  HVLK G D D++V NA+I+++   G L  A  VFD+  VR+LVS
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYI 206
           WNS+I  + ++  P  A+R F+ MQL  + PD +T++ + S  +QL D  + R I  + I
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
               L   V + NAL++MY                               AK G+++ A 
Sbjct: 351 RREWLDKDVVIGNALVNMY-------------------------------AKLGYMNCAH 379

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQL 325
            +FD LP K  + WN ++ GY Q   + EA+  ++ M+      P+  T V  + A S +
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           GAL  G+ IH  + K +  L+V + T L+D+Y KCG +  A+ +F+E+P   S+ + AII
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
             L +HG+  +A+  F +M+   +  D ITF+ +LSAC H GLVDEG+K F  M   + +
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P LKHY CMVDLLGR+G LE+A +L+R+MP+  D  +WGAL  AC+++GN  +G  A+ 
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +LLE+D ++ G YVLL+N+Y ++  WE   KVR +  +RG+ KTPG SS+ V      F 
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 566 VRDKSHPELEQIYDCLVQLT 585
             +++HP+  +IY  L  L+
Sbjct: 680 TGNQTHPKYTEIYKELKVLS 699



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 161/530 (30%), Positives = 266/530 (50%), Gaps = 56/530 (10%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR---NGGTRPDNFTYPLLFKVCASLGL 94
           +   N FSWN  I  ++  GK  EA++   Q+      G  RPD +T+P + K C SL  
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL-- 137

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
              G ++   V K+GF+ D++V  +++H++   G L +A  VF +  V+++ SWN++I+G
Sbjct: 138 -VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           F ++G    A+ +   M+ E V+ D +T+  ++  CAQ +D+  G  IH ++ + GL   
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V ++NAL++MY K G+L+ A+ +FD M  + +VS                          
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS-------------------------- 290

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
                WN+II  Y Q      AL  F  MQ  GI+PD +T V   S  SQL        I
Sbjct: 291 -----WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 335 HRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
             F I +E  + +VV+G ALV+MYAK G +  A  VF ++P ++++++  ++ G   +G 
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGL 405

Query: 394 ALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           A +AI  ++ M      +P++ T++ I+ A  H G + +G K  A++    + S  L  +
Sbjct: 406 ASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL---IKNSLYLDVF 462

Query: 453 --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM----K 506
             +C++DL G+ G LE+A  L   +P     V W A+  +  +HG    GE A       
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIASLGIHGR---GEEALQLFKDM 518

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-ERGVE---KTPGC 552
           L E    D   +V L +    S + +E  K   +M+ E G++   K  GC
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 38/321 (11%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +L  G   ++ +   +I+++V+ GD+ L+ + FD    +N+ SWNS+I+ +VR G   EA
Sbjct: 45  LLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEA 104

Query: 165 I----RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           +    +LF       + PD  T   ++ AC  L D   G+++H  + + G    V +A +
Sbjct: 105 MNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAAS 161

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ +Y + G L+ A ++F  M                               P K V  W
Sbjct: 162 LVHLYSRYGVLDVAHKVFVDM-------------------------------PVKDVGSW 190

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA+I G+ Q   +  AL + + M+  G+K D +T    L  C+Q   + +G+ IH  + K
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK 250

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
              + +V +  AL++MY+K G +  A  VF +M  R+ +++ +II     +     A+ +
Sbjct: 251 HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRF 310

Query: 401 FSEMIGVGLMPDEITFLGILS 421
           F  M   G+ PD +T + + S
Sbjct: 311 FKGMQLGGIRPDLLTVVSLTS 331



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 48/316 (15%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           ++N  +++H  +   G +  + L+  L+++YV  G +  +   FD +  K + S  ++I 
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            Y +FG              KY    N +               LF       ++PD  T
Sbjct: 94  AYVRFG--------------KYHEAMNCVN-------------QLFSMCGGGHLRPDFYT 126

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               L AC    +L DG  +H  + K  F  +V +  +LV +Y++ G +  A +VF +MP
Sbjct: 127 FPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMP 183

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            ++  ++ A+I G   +G A  A+   + M G G+  D IT   IL  C     V  G  
Sbjct: 184 VKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL 243

Query: 435 YFAQMSSIFRLSPKLKH--------YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
               +         LKH         + ++++  + G L++A+ +   M +  D+V W +
Sbjct: 244 IHLHV---------LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV-RDLVSWNS 293

Query: 487 LFFACRLHGNVSIGER 502
           +  A   + + S   R
Sbjct: 294 IIAAYEQNNDPSTALR 309


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/491 (40%), Positives = 308/491 (62%), Gaps = 8/491 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC----GDLGLACNVFDESCVRNLVSWNSLINGF 155
           +I   ++K G   D    NA   +   C    GD+  A  VF +    N+ +WN++I GF
Sbjct: 40  KIHSQLIKTGLAKDT---NAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIRGF 96

Query: 156 VRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
            RS  P+ +I L+ DM L   V+P  +T   +  A AQL+  + G ++H  + + GL   
Sbjct: 97  SRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLEND 156

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + N ++ MYV CG    A ++FD  ++  +V+  TMI+G AK G +D +R++FD +  
Sbjct: 157 SFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSL 216

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           +  V WN++I GYV+  R  +AL LF +MQ   I+P   T V  L+AC+ LGA+  G WI
Sbjct: 217 RNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWI 276

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H ++ K+ F LN ++ TA++DMY+KCG+I KA+QVF   P R    + ++I GLA++G+ 
Sbjct: 277 HDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQE 336

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +A+  FS +    L PD+++F+ +L+AC H G+VD+ + YF  M   +++ P +KH+SC
Sbjct: 337 NEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSC 396

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVD+LGR+GLLEEAE+LIRSM +  D ++WG+L ++C  +GN+ + +RAA  L+EL+P +
Sbjct: 397 MVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSE 456

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
           S  +VL+AN Y  +N +EEA K R  ++E  + K PGCS IEV G ++EF+   ++HPE+
Sbjct: 457 SSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCIEVGGEVHEFVAGGRAHPEI 516

Query: 575 EQIYDCLVQLT 585
           ++IY  L  LT
Sbjct: 517 KEIYRVLDVLT 527



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 200/404 (49%), Gaps = 68/404 (16%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL     A SR++AFCA S + +++Y   +   +QNPN F+WN  IRGF  +   + ++
Sbjct: 48  TGLAKDTNAASRILAFCA-SPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSI 106

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            LY  ML     +P   TYP +FK  A L L   G ++ G ++KLG + D ++ N ++ +
Sbjct: 107 SLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFM 166

Query: 124 FVSCG---------DLGL---------------ACNVFDES-------CVRNLVSWNSLI 152
           +V+CG         D G+                C + DES        +RN VSWNS+I
Sbjct: 167 YVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMI 226

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+VR+G   +A+ LF+ MQ+ER+EP E TM+ +++ACA L  +  G  IH Y+ +    
Sbjct: 227 SGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFE 286

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L   +  A++DMY KCG ++ A ++F S                                
Sbjct: 287 LNPIVVTAIIDMYSKCGSIDKAVQVFQSA------------------------------- 315

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD--- 329
           P + +  WN++I G     +  EAL LF  +Q++ ++PD V+ +  L+AC   G +D   
Sbjct: 316 PRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAK 375

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           D   + R  +K      +   + +VD+  + G + +A ++   M
Sbjct: 376 DYFLLMR--DKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSM 417


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 279/501 (55%), Gaps = 34/501 (6%)

Query: 99  YEIFGHVLKLGFDVDMYVHN---AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           ++   H+LK G     +  +   A +        +  A ++F      N   WN++I  +
Sbjct: 24  HQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAY 83

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
             S  P  A+ +F  M    V PD+ T    + +C     +  GR+IH ++ ++GL   +
Sbjct: 84  ANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDL 143

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT------------------------ 251
            + N L+ +Y  CG +E A  + D M+ + VVS                           
Sbjct: 144 FIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTER 203

Query: 252 -------MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
                  MI GY   G L+ AR++F + P K VV WNA+I GY  A R  E L LF +MQ
Sbjct: 204 NVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ 263

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             G+KPD  T V  LSAC+ +GAL  G W+H +I+K   +++  + TALVDMY+KCG+I 
Sbjct: 264 HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIE 323

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           KAL+VF+    ++  T+ +II GL+ HG    A+  FSEM+  G  P+E+TF+ +LSAC 
Sbjct: 324 KALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACS 383

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
             GL+DEGR+ F  M  +  + P ++HY CMVDLLGR GLLEEAE+L++ MP     VVW
Sbjct: 384 RAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVW 443

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            +L  ACR HGNV + ER A KLLEL PQ+S  +V L+NMY     W++  +VR+ M  +
Sbjct: 444 ESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQ 503

Query: 545 GVEKTPGCSSIEVNGLLYEFI 565
           GV K PGCS IEV+G +YEF+
Sbjct: 504 GVRKDPGCSMIEVDGTVYEFL 524



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 214/463 (46%), Gaps = 113/463 (24%)

Query: 4   TGLISHGFAPSRLIAFCAI-SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +GLI   FA SRLIA  +  S ++ + Y   I   + NPNS+ WN  IR +  +     A
Sbjct: 33  SGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAA 92

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++ QML +    PD +T+    K C S      G +I GHVLK G   D+++ N +IH
Sbjct: 93  LTIFHQML-HASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIH 151

Query: 123 VFVSCGD-------------------------------LGLACNVFD------------- 138
           ++ SCG                                + LAC++FD             
Sbjct: 152 LYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFM 211

Query: 139 ------------------ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
                             E+ V+N+VSWN++I G+  +G   E + LF DMQ   V+PD 
Sbjct: 212 ISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDN 271

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T++ ++SACA +  L+ G  +H YI ++G+++   +A AL+DMY KCG +E A E+F+S
Sbjct: 272 CTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNS 331

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
            + K + +  ++I G +  G                                 + AL +F
Sbjct: 332 CLRKDISTWNSIISGLSTHG-------------------------------SGQHALQIF 360

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGTA------- 352
            EM   G KP+ VT V  LSACS+ G LD+G        +E FNL V V G         
Sbjct: 361 SEMLVEGFKPNEVTFVCVLSACSRAGLLDEG--------REMFNLMVHVHGIQPTIEHYG 412

Query: 353 -LVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGGLALHGK 393
            +VD+  + G + +A ++  +MP++  S+ + +++G    HG 
Sbjct: 413 CMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGN 455



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 146/289 (50%), Gaps = 6/289 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   ++       N  SWN  I G+   G+  E + L++ M ++ G +PDN T   +  
Sbjct: 221 LEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDM-QHAGVKPDNCTLVSVLS 279

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +G    G  +  ++ K G  +D +V  A++ ++  CG +  A  VF+    +++ +
Sbjct: 280 ACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIST 339

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYI 206
           WNS+I+G    G  + A+++F +M +E  +P+EVT + ++SAC++   L+ GRE+ +  +
Sbjct: 340 WNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMV 399

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK-FGFLDIA 265
              G+  T+     ++D+  + G LE AEE+   M  K        ++G  +  G +++A
Sbjct: 400 HVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELA 459

Query: 266 RKIFDDLPEKYVVPWNAII---GGYVQAKRSKEALALFHEMQATGIKPD 311
            ++   L E      ++ +     Y    R K+ + +  +M+A G++ D
Sbjct: 460 ERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD 508


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 296/499 (59%), Gaps = 35/499 (7%)

Query: 124 FVSCGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--VEPDE 180
           F + G L  A  +FD   + RN   + ++I  +   G PREA   +  M  ++  V P++
Sbjct: 76  FDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPND 135

Query: 181 VTMIGMVSACAQLEDLNLGREIH--------------W--------YISESGLTL----- 213
            T   + SAC++   +  G++ H              W         + E G+ +     
Sbjct: 136 FTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFD 195

Query: 214 -----TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
                 V   N L++ YVK G L+ A  +FD M  + VVS T M+VGYA  GFL  A  +
Sbjct: 196 KIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCL 255

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD++P++ +V W+A+I GY+Q     +AL LF EMQ   +K D V     LSAC++LGAL
Sbjct: 256 FDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGAL 315

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           D G W+H +I+K    ++  L TAL+DMY+KCG I  A +VF E  ++    ++++IGGL
Sbjct: 316 DQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGL 375

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A+H     AI  F++MI  G+ P EIT++ IL+AC H GLVD G + F +M    +  P+
Sbjct: 376 AMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPR 435

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY C+VDLLGR+GLL +A +++ +MP+ AD  +W AL  AC+LH NV +GE+    L+
Sbjct: 436 MQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILI 495

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           +++PQ+   YVL +N+Y   N W+ +GK+R+ M+ RG++K PGCSSIE+NG ++EF+ RD
Sbjct: 496 KMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRD 555

Query: 569 KSHPELEQIYDCLVQLTRH 587
            SHP+ + IY+ L  LT H
Sbjct: 556 HSHPQSQVIYELLHILTNH 574



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 202/456 (44%), Gaps = 99/456 (21%)

Query: 4   TGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNP-NSFSWNVAIRGFLETGKMRE 61
           T LI   +A  RL+ +F +     +L+Y  K+   V  P NSF +   I+ +   G  RE
Sbjct: 57  TSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPRE 116

Query: 62  AVDLYKQMLRNGG-TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV-------- 112
           A   Y +ML +     P++FT+  +F  C+     F G +    ++K  F+         
Sbjct: 117 AFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSL 176

Query: 113 ------------------------DMYVHNAVIHVFVSCGDLGLACNVFDESCVR----- 143
                                   D+   N +I+ +V  GDL  A  +FDE   R     
Sbjct: 177 LDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSW 236

Query: 144 --------------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
                                     NLVSW++LI G+++ G   +A+ LF++MQ+ +V+
Sbjct: 237 TIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVK 296

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            DEV +  ++SACA+L  L+ GR +H YI + G+ +   L+ AL+DMY KCG+++ A ++
Sbjct: 297 MDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKV 356

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F    +K V   ++MI G A   F                                ++A+
Sbjct: 357 FQETGDKKVFVWSSMIGGLAMHSF-------------------------------GEKAI 385

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDM 356
            LF +M   GI+P  +T ++ L+AC+  G +D G+ I +R +E +     +     +VD+
Sbjct: 386 ELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDL 445

Query: 357 YAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
             + G +  A +V   MP + +   + A++    LH
Sbjct: 446 LGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLH 481



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 21/247 (8%)

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-NLNVVLGTALVDM--YAKCGNIAK 365
           KPD     H +S         D I +H  + K +        G  L+    +   G++  
Sbjct: 30  KPD-----HAISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNY 84

Query: 366 ALQVFH--EMPERNSLTYTAIIGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILS 421
           A ++F   ++P RNS  YT +I   A  G   +A +++S M+     + P++ TF  + S
Sbjct: 85  AQKLFDTVDIP-RNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFS 143

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC     V EG++  AQM   F     +  ++ ++D  G+ G +    + +       DV
Sbjct: 144 ACSKFNGVFEGKQAHAQMIK-FPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDV 202

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLL--ELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           V W      C ++G V  G+    + L  E+  +D   + ++   Y D+    EA  +  
Sbjct: 203 VSWN-----CLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFD 257

Query: 540 MMEERGV 546
            M +R +
Sbjct: 258 EMPKRNL 264


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/479 (39%), Positives = 292/479 (60%), Gaps = 1/479 (0%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   +++ G   D ++   ++     C  +  A  +F  +   N+  + +LI+GFV SG 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             EAI+L+  M  E + PD   M  ++ AC     L  GRE+H    + G +    +   
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           +M++Y KCG+L  A  +F+ M  + VV+ T MI  Y+  G ++ A  +F  +  K  V W
Sbjct: 188 IMELYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I G+V+ + +  AL  F  MQ   ++P+  T V  LSACSQLGAL+ G W+H ++ K
Sbjct: 247 TAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               LN+ +G AL++MY++CG+I +A  VF EM +R+ +TY  +I GL+++GK+  AI  
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  M+G  L P  +TF+G+L+AC HGGLVD G + F  M+  +R+ P+++HY CMVDLLG
Sbjct: 367 FRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLG 426

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R G LEEA  LIR+M M  D ++ G L  AC++H N+ +GE+ A +L +    DSG YVL
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVL 486

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
           L+++Y  S  W+EA +VR  M+E G++K PGCSSIEVN  ++EF++ D  HP+ E+IY+
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYE 545



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 187/403 (46%), Gaps = 68/403 (16%)

Query: 6   LISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI +G +    + F    + S+   +DY ++I     NPN + +   I GF+ +G   EA
Sbjct: 72  LIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEA 131

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           + LY +ML      PDN+    + K C S L LR  G E+    LKLGF  +  V   ++
Sbjct: 132 IQLYSRMLHE-SILPDNYLMASILKACGSQLALR-EGREVHSRALKLGFSSNRLVRLRIM 189

Query: 122 HVFVSCGDLGLACNVFDE----------------------------SCVR--NLVSWNSL 151
            ++  CG+LG A  VF+E                            S VR  + V W ++
Sbjct: 190 ELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM 249

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I+GFVR+     A+  FR MQ E V P+E T++ ++SAC+QL  L +GR +H Y+ +  +
Sbjct: 250 IDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 309

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            L + + NAL++MY +CG ++ A+ +FD M ++ V++  TMI G +  G           
Sbjct: 310 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG----------- 358

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                               +S++A+ LF  M    ++P  VT V  L+ACS  G +D G
Sbjct: 359 --------------------KSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 332 IWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             I H           +     +VD+  + G + +A  +   M
Sbjct: 399 FEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 141/355 (39%), Gaps = 67/355 (18%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++S   +   +N    IH  +  +G +    +   L+    KC  ++ A  IF    N  
Sbjct: 52  IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHN-- 109

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                                      P  Y+  + A+I G+V +    EA+ L+  M  
Sbjct: 110 ---------------------------PNVYL--YTALIDGFVSSGNYLEAIQLYSRMLH 140

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
             I PD       L AC    AL +G  +H    K  F+ N ++   ++++Y KCG +  
Sbjct: 141 ESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 200

Query: 366 ALQVFHEMPE------------------------------RNSLTYTAIIGGLALHGKAL 395
           A +VF EMPE                              ++++ +TA+I G   + +  
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETN 260

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            A+  F  M G  + P+E T + +LSAC   G ++ GR   + M   F +   L   + +
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNAL 319

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           +++  R G ++EA+ +   M    DV+ +  +     ++G      R A++L  +
Sbjct: 320 INMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGK----SRQAIELFRV 369


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 319/561 (56%), Gaps = 34/561 (6%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           + ++   K+   + + +  SWN  I G++  G   + +DL++QML  G    D  T   +
Sbjct: 199 RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSV 257

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              C++ G+  LG  + G+ +K  F  ++ ++N ++ ++   G+L  A  VF+    R++
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 317

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           VSW S+I G+ R G    ++RLF +M+ E + PD  T+  ++ ACA    L  G+++H Y
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNY 377

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           I E+ +   + ++NALMDMY KCG +  A  +                            
Sbjct: 378 IKENKMQSDLFVSNALMDMYAKCGSMGDAHSV---------------------------- 409

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
              F ++  K +V WN +IGGY +     EAL LF EMQ    KP+++T    L AC+ L
Sbjct: 410 ---FSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASL 465

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
            AL+ G  IH  I +  F+L+  +  ALVDMY KCG +  A  +F  +PE++ +++T +I
Sbjct: 466 AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMI 525

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G  +HG   +AI+ F+EM   G+ PDE++F+ IL AC H GL+DEG  +F  M +   +
Sbjct: 526 AGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCI 585

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            PK +HY+C+VDLL R+G L +A + I+ MP+  D  +WGAL   CR++ +V + E+ A 
Sbjct: 586 EPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAE 645

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
            + EL+P+++G YVLLAN+Y ++  WEE  K+R+ +  RG+ K PGCS IE+ G ++ F+
Sbjct: 646 HVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFV 705

Query: 566 VRDKSHPELEQIYDCLVQLTR 586
             D SHP   +I + L++ TR
Sbjct: 706 TGDSSHPLANKI-ELLLKKTR 725



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 193/372 (51%), Gaps = 37/372 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+S NL+   ++   +   +  SW   I G+   G    +V L+ +M +  G  PD FT 
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKE-GISPDIFTI 355

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA  GL   G ++  ++ +     D++V NA++ ++  CG +G A +VF E  V
Sbjct: 356 TTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQV 415

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++VSWN++I G+ ++  P EA+ LF +MQ    +P+ +TM  ++ ACA L  L  G+EI
Sbjct: 416 KDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEI 474

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +I  +G +L   +ANAL+DMY+KCG L  A  +FD +  K +VS T MI GY   G+ 
Sbjct: 475 HGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGY- 533

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                           EA+A F+EM+ +GI+PD V+ +  L AC
Sbjct: 534 ------------------------------GSEAIAAFNEMRNSGIEPDEVSFISILYAC 563

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSL 379
           S  G LD+G W    + + N  +         +VD+ A+ GN++KA +    MP E ++ 
Sbjct: 564 SHSGLLDEG-WGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 380 TYTAIIGGLALH 391
            + A++ G  ++
Sbjct: 623 IWGALLCGCRIY 634



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 187/385 (48%), Gaps = 23/385 (5%)

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           +++ SC  +G +  +  E+    +  +N  I  F   G  R A+ L    Q  + + +  
Sbjct: 46  NLYHSCATIGTSV-LPSETIDCKITDYNIEICRFCELGNLRRAMELIN--QSPKPDLELR 102

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++  CA L+ +  GR IH  I  + + +   L + L+ MYV CG L     IFD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 242 VNKTVVSCTTMIVGYAKFG------------------FLDIARKIFDDLPEKYVVPWNAI 283
            N+ V     ++ GYAK G                   ++ ARK+FD+L ++ V+ WN++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I GYV    S++ L LF +M   GI  D  T V  ++ CS  G L  G  +H +  K +F
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
              + L   L+DMY+K GN+  A+QVF  M ER+ +++T++I G A  G +  ++  F E
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M   G+ PD  T   IL AC   GL++ G+     +    ++   L   + ++D+  + G
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE-NKMQSDLFVSNALMDMYAKCG 401

Query: 464 LLEEAEQLIRSMPMAADVVVWGALF 488
            + +A  +   M +  D+V W  + 
Sbjct: 402 SMGDAHSVFSEMQV-KDIVSWNTMI 425


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 311/560 (55%), Gaps = 34/560 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K+  ++   +  SWN  I GF + G    A+ +  +M +  G + D  T   +  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM-KGEGVKMDTITVASILP 230

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           VCA       G  I  HVLK G D D++V NA+I+++   G L  A  VFD+  VR+LVS
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYI 206
           WNS+I  + ++  P  A+R F+ MQL  + PD +T++ + S  +QL D  + R I  + I
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
               L   V + NAL++MY                               AK G+++ A 
Sbjct: 351 RREWLDKDVVIGNALVNMY-------------------------------AKLGYMNCAH 379

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQL 325
            +FD LP K  + WN ++ GY Q   + EA+  ++ M+      P+  T V  + A S +
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           GAL  G+ IH  + K +  L+V + T L+D+Y KCG +  A+ +F+E+P   S+ + AII
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
             L +HG+  +A+  F +M+   +  D ITF+ +LSAC H GLVDEG+K F  M   + +
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P LKHY CMVDLLGR+G LE+A +L+R+MP+  D  +WGAL  AC+++GN  +G  A+ 
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +LLE+D ++ G YVLL+N+Y ++  WE   KVR +  +RG+ KTPG SS+ V      F 
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 566 VRDKSHPELEQIYDCLVQLT 585
             +++HP+  +IY  L  L+
Sbjct: 680 TGNQTHPKYTEIYKELKVLS 699



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 161/530 (30%), Positives = 266/530 (50%), Gaps = 56/530 (10%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR---NGGTRPDNFTYPLLFKVCASLGL 94
           +   N FSWN  I  ++  GK  EA++   Q+      G  RPD +T+P + K C SL  
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL-- 137

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
              G ++   V K+GF+ D++V  +++H++   G L +A  VF +  V+++ SWN++I+G
Sbjct: 138 -VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           F ++G    A+ +   M+ E V+ D +T+  ++  CAQ +D+  G  IH ++ + GL   
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V ++NAL++MY K G+L+ A+ +FD M  + +VS                          
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS-------------------------- 290

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
                WN+II  Y Q      AL  F  MQ  GI+PD +T V   S  SQL        I
Sbjct: 291 -----WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 335 HRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
             F I +E  + +VV+G ALV+MYAK G +  A  VF ++P ++++++  ++ G   +G 
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGL 405

Query: 394 ALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           A +AI  ++ M      +P++ T++ I+ A  H G + +G K  A++    + S  L  +
Sbjct: 406 ASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL---IKNSLYLDVF 462

Query: 453 --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM----K 506
             +C++DL G+ G LE+A  L   +P     V W A+  +  +HG    GE A       
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIASLGIHGR---GEEALQLFKDM 518

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-ERGVE---KTPGC 552
           L E    D   +V L +    S + +E  K   +M+ E G++   K  GC
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 38/321 (11%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +L  G   ++ +   +I+++V+ GD+ L+ + FD    +N+ SWNS+I+ +VR G   EA
Sbjct: 45  LLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEA 104

Query: 165 I----RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           +    +LF       + PD  T   ++ AC  L D   G+++H  + + G    V +A +
Sbjct: 105 MNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAAS 161

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ +Y + G L+ A ++F  M                               P K V  W
Sbjct: 162 LVHLYSRYGVLDVAHKVFVDM-------------------------------PVKDVGSW 190

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA+I G+ Q   +  AL + + M+  G+K D +T    L  C+Q   + +G+ IH  + K
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK 250

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
              + +V +  AL++MY+K G +  A  VF +M  R+ +++ +II     +     A+ +
Sbjct: 251 HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRF 310

Query: 401 FSEMIGVGLMPDEITFLGILS 421
           F  M   G+ PD +T + + S
Sbjct: 311 FKGMQLGGIRPDLLTVVSLTS 331



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 48/316 (15%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           ++N  +++H  +   G +  + L+  L+++YV  G +  +   FD +  K + S  ++I 
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            Y +FG              KY    N +               LF       ++PD  T
Sbjct: 94  AYVRFG--------------KYHEAMNCVN-------------QLFSMCGGGHLRPDFYT 126

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               L AC    +L DG  +H  + K  F  +V +  +LV +Y++ G +  A +VF +MP
Sbjct: 127 FPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMP 183

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            ++  ++ A+I G   +G A  A+   + M G G+  D IT   IL  C     V  G  
Sbjct: 184 VKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL 243

Query: 435 YFAQMSSIFRLSPKLKH--------YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
               +         LKH         + ++++  + G L++A+ +   M +  D+V W +
Sbjct: 244 IHLHV---------LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV-RDLVSWNS 293

Query: 487 LFFACRLHGNVSIGER 502
           +  A   + + S   R
Sbjct: 294 IIAAYEQNNDPSTALR 309


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/537 (36%), Positives = 305/537 (56%), Gaps = 33/537 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  I  +  T    E ++LY +M+  G  +PD+ T+ +  K C+SL    +G  I+  
Sbjct: 51  AWNSMIIAYSRTNYPDEVLNLYYRMISEG-IKPDSSTFTVTLKACSSLMDLDMGEIIWNQ 109

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +  G+  D++V ++V++++   G +  A  VFD+   R++VSW ++I GF +SG P +A
Sbjct: 110 AVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDA 169

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I ++R MQ ER E D V M+G++ AC  L D   G  +H ++    + +   L  +L+DM
Sbjct: 170 IDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDM 229

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y K GK                               L++A ++F+ +P K V+ W A+I
Sbjct: 230 YAKNGK-------------------------------LELASRVFEGIPYKSVISWGALI 258

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            G+ Q   + + LA   EMQ +G KPD V+ +  LSAC+Q+G L  G  +H  I K  + 
Sbjct: 259 SGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLY- 317

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L+ V GTAL+DMYAKCG +  A  +F ++  R+ + + A+I    +HG  ++A+S F +M
Sbjct: 318 LDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKM 377

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
               + PD  TF  +LSAC H GLV+EG+ +F  +    ++ P  KHY+CMVDLL R+G 
Sbjct: 378 KETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQ 437

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           +EEA QLI SM +   + +W AL   C  H N+ IGE  A K+LE +P D GIYVL++N 
Sbjct: 438 VEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNF 497

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +  +  W++A   RK+M+  G+ K PG S++EVNG L  F++ DK+H + + I   L
Sbjct: 498 FSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMEDKNHNQYQDILQIL 554



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 189/382 (49%), Gaps = 37/382 (9%)

Query: 118 NAVIHVFVSCGDLG---LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           N++  +  S G +     A NVF++   R++ +WNS+I  + R+ +P E + L+  M  E
Sbjct: 19  NSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISE 78

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            ++PD  T    + AC+ L DL++G  I     + G    V + ++++++Y K GK++ A
Sbjct: 79  GIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKA 138

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
           + +FD MV + VVS TTMI G+A+ G                               R  
Sbjct: 139 KIVFDKMVKRDVVSWTTMITGFAQSG-------------------------------RPL 167

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           +A+ ++  MQ    + D V  V  + AC+ LG    G+ +H  + +   N++ VL T+L+
Sbjct: 168 DAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLI 227

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           DMYAK G +  A +VF  +P ++ +++ A+I G A +G A   ++   EM   G  PD +
Sbjct: 228 DMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLV 287

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           + +  LSAC   G +  G+     +  + RL       + ++D+  + G L  A  L   
Sbjct: 288 SLISSLSACAQVGNLKVGKSLHGHI--VKRLYLDKVSGTALIDMYAKCGALTFARALFDQ 345

Query: 475 MPMAADVVVWGALFFACRLHGN 496
           +    D+++W A+  +  +HG+
Sbjct: 346 IE-PRDLILWNAMISSYGIHGD 366



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 188/399 (47%), Gaps = 40/399 (10%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S  +D    +   +   +  SW   I GF ++G+  +A+D+Y+ M +   T  D    
Sbjct: 130 AKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKE-RTEGDGVVM 188

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             L + C SLG    G  + GH+++   ++D  +  ++I ++   G L LA  VF+    
Sbjct: 189 VGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPY 248

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           ++++SW +LI+GF ++GF  + +    +MQ    +PD V++I  +SACAQ+ +L +G+ +
Sbjct: 249 KSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSL 308

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +I +  L L      AL+DMY KCG L  A  +FD                       
Sbjct: 309 HGHIVKR-LYLDKVSGTALIDMYAKCGALTFARALFDQ---------------------- 345

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                    +  + ++ WNA+I  Y       EAL+LF +M+ T I PD  T    LSAC
Sbjct: 346 ---------IEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSAC 396

Query: 323 SQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT- 380
           S  G +++G  W H  I+K     +      +VD+ ++ G + +A Q+   M  +  L  
Sbjct: 397 SHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAI 456

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           + A++ G   H   L       EM+   ++      LGI
Sbjct: 457 WVALLSGCLNHKNLL-----IGEMVAKKILESNPDDLGI 490



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 133/271 (49%), Gaps = 11/271 (4%)

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S   +I  Y +   +  AR +F+ +P++ +  WN++I  Y +     E L L++ M + G
Sbjct: 20  SIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEG 79

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           IKPD+ T    L ACS L  LD G  I        +  +V + ++++++YAK G + KA 
Sbjct: 80  IKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAK 139

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VF +M +R+ +++T +I G A  G+ LDAI  +  M       D +  +G++ AC   G
Sbjct: 140 IVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLG 199

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKH--YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
               G      M    R    + +   + ++D+  ++G LE A ++   +P  + V+ WG
Sbjct: 200 DSKFGLSVHGHM---VRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKS-VISWG 255

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           AL      +G      +    L+E+  Q+SG
Sbjct: 256 ALISGFAQNG---FANKTLASLVEM--QNSG 281


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 319/563 (56%), Gaps = 2/563 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S  +D+  ++  ++   +  SWN+ +    ++G+ REA+ +   M  N G R D+ TY
Sbjct: 239 AKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDM-HNRGVRLDSTTY 297

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                 CA L     G ++   V++    +D YV +A++ ++  CG    A  VF     
Sbjct: 298 TSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRD 357

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           RN VSW  LI GF++ G   E++ LF  M+ E +  D+  +  ++S C+   D+ L R++
Sbjct: 358 RNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQL 417

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    +SG T  V ++N+L+ MY KCG L++AE IF SM  + +VS T M+  Y++ G +
Sbjct: 418 HSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNI 477

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSA 321
             AR+ FD +  + V+ WNA++G Y+Q    ++ L ++  M     + PD VT V     
Sbjct: 478 GKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRG 537

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ +GA   G  I     K    L+  +  A++ MY+KCG I++A ++F  +  ++ +++
Sbjct: 538 CADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSW 597

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            A+I G + HG    AI  F +M+  G  PD I+++ +LS+C H GLV EG+ YF  +  
Sbjct: 598 NAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKR 657

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
              +SP L+H+SCMVDLL R+G L EA+ LI  MPM     VWGAL  AC+ HGN  + E
Sbjct: 658 DHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAE 717

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
            AA  L +LD  DSG Y+LLA +Y D+    ++ +VRK+M ++G++K PG S +EV   +
Sbjct: 718 LAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKV 777

Query: 562 YEFIVRDKSHPELEQIYDCLVQL 584
           + F   D SHP++  I + L +L
Sbjct: 778 HVFKAEDVSHPQVIAIREKLDEL 800



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 225/490 (45%), Gaps = 48/490 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ ++G+  +A++ +  M R+G + P+ FT+    K C +LG   +  ++ G 
Sbjct: 128 SWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGL 187

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACN----------------------------- 135
           + K GF  D  V   ++ +FV CG +  A                               
Sbjct: 188 LTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHA 247

Query: 136 --VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             +F+    R++VSWN +++   +SG  REA+ +  DM    V  D  T    ++ACA+L
Sbjct: 248 LELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKL 307

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+++H  +  S   +   +A+A++++Y KCG  + A  +F S+ ++  VS T +I
Sbjct: 308 SSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLI 367

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+ ++G    + ++F+ +  + +      +   +    ++  + L  ++ +  +K    
Sbjct: 368 GGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHT 427

Query: 314 TTV----HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
             V      +S  ++ G L +   I   +E+     ++V  T ++  Y++ GNI KA + 
Sbjct: 428 RAVVISNSLISMYAKCGNLQNAESIFSSMEER----DIVSWTGMLTAYSQVGNIGKAREF 483

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGG- 427
           F  M  RN +T+ A++G    HG   D +  +S M+    ++PD +T++ +   C   G 
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 428 --LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
             L D+   +  ++  I   S      + ++ +  + G + EA ++   +    D+V W 
Sbjct: 544 NKLGDQITGHTVKVGLILDTSV----MNAVITMYSKCGRISEARKIFDFLSR-KDLVSWN 598

Query: 486 ALFFACRLHG 495
           A+      HG
Sbjct: 599 AMITGYSQHG 608



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 200/392 (51%), Gaps = 15/392 (3%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++  HN +++ +   G L  A  +F     R++ SWN+L++G+ +SG   +A+  F  M+
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 173 LERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P+  T    + +C  L    +  ++   +++ G      +A  ++DM+V+CG +
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           + A + F  +   TV    +M+ GYAK   +D A ++F+ +PE+ VV WN ++    Q+ 
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           R++EAL++  +M   G++ D+ T    L+AC++L +L  G  +H  + +    ++  + +
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVAS 333

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           A+V++YAKCG   +A +VF  + +RN++++T +IGG   +G   +++  F++M    +  
Sbjct: 334 AMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTV 393

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY------SCMVDLLGRSGLL 465
           D+     I+S C +       R        +  LS K  H       + ++ +  + G L
Sbjct: 394 DQFALATIISGCSN-------RMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNL 446

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           + AE +  SM    D+V W  +  A    GN+
Sbjct: 447 QNAESIFSSME-ERDIVSWTGMLTAYSQVGNI 477



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 11/299 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+  N+    +    +   N  +WN  +  +++ G   + + +Y  ML      PD  
Sbjct: 470 AYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWV 529

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  LF+ CA +G   LG +I GH +K+G  +D  V NAVI ++  CG +  A  +FD  
Sbjct: 530 TYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFL 589

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             ++LVSWN++I G+ + G  ++AI +F DM  +  +PD ++ + ++S+C+      L +
Sbjct: 590 SRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSH---SGLVQ 646

Query: 201 EIHWYIS----ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           E  +Y      +  ++  +   + ++D+  + G L  A+ + D M  K        ++  
Sbjct: 647 EGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSA 706

Query: 257 AKFG----FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
            K        ++A K   DL       +  +   Y  A +S ++  +   M+  GIK +
Sbjct: 707 CKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKN 765


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 327/582 (56%), Gaps = 36/582 (6%)

Query: 39  QNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           +NP  N  SW  AI GF+  G   EA+ L+ ++L +G  RP++ T+  + + C  LG   
Sbjct: 143 RNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDVTFTSVVRACGELGDFG 201

Query: 97  LGYEIFGHVLKLGFDVDMYVHN-------------------------------AVIHVFV 125
           LG  I G V+K GF+  + V N                               A++  +V
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
             GDL  A  +FDE   RN +SW+++I  + +SG+  EA++LF  M  E  +P+      
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
            +SA A L  L+ G  IH ++++ G+   V + ++L+D+Y KCGK +    +FD ++ K 
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VV   +M+ GY+  G L+   ++F+ +PEK  V W  II GY++ ++ ++ L +F+ +  
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           +G  P+  T    L AC+ + +LD G+ +H  I K     ++ +GTAL DMYAKCG+I  
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACC 424
           + QVF  MPE+N +++T +I GLA  G A++++  F EM     + P+E+  L +L AC 
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLVD+G  YF  M  ++ + PK KHY+C+VDLL RSG L EAE+ IR++P   +   W
Sbjct: 562 HCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAW 621

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL   C+ + +  I ER A KL +L   +S  YVLL+N+Y  +  W +   +RK+M E+
Sbjct: 622 AALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREK 681

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           G++K+ GCS +EV   ++ F   D SH +  +IY  L QL R
Sbjct: 682 GLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTL-QLLR 722



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 208/433 (48%), Gaps = 67/433 (15%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING------------------ 154
           D+ V N +I  +V  G+L  A  +FDE   RN VSW++LI+G                  
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 155 -------------FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
                        FVR+G   EA++LF  +    V P++VT   +V AC +L D  LG  
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           I   + ++G    + ++N+L+ + ++ G+++ A  +FD M  + VVS T ++  Y + G 
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           L  AR+IFD++PE+  + W+A+I  Y Q+  ++EAL LF +M   G KP+       LSA
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
            + L AL  GI IH  + K   + +V +G++L+D+Y KCG       VF  + E+N + +
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 382 TAIIGGLALHGKAL-------------------------------DAISYFSEMIGVGLM 410
            +++GG +++G+                                   +  F+ ++  G  
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEA 468
           P++ TF  +L AC     +D+G     +   I +L  +   +  + + D+  + G +  +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGK---IIKLGIQYDIFVGTALTDMYAKCGDIGSS 502

Query: 469 EQLIRSMPMAADV 481
           +Q+   MP   ++
Sbjct: 503 KQVFERMPEKNEI 515



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 189/462 (40%), Gaps = 113/462 (24%)

Query: 1   MTITGLI-SHGFAPSRLIAFCAISES---KNLDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           M+I GL+   GF     ++   I+ S     +D   ++   ++  +  SW   +  ++ET
Sbjct: 204 MSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVET 263

Query: 57  GKMREAVDLYKQM------------------------------LRNGGTRPDNFTYPLLF 86
           G +REA  ++ +M                              +   G +P+   +    
Sbjct: 264 GDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTL 323

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
              ASL     G  I GHV K+G D D+++ +++I ++  CG       VFD    +N+V
Sbjct: 324 SALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVV 383

Query: 147 SWNSLINGFVRSG-----------FP--------------------REAIRLFRDMQLER 175
            WNS++ G+  +G            P                     + + +F  + +  
Sbjct: 384 CWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSG 443

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
             P++ T   ++ ACA +  L+ G  +H  I + G+   + +  AL DMY KCG + S++
Sbjct: 444 QTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++F+ M  K  +S T MI G A+ GF                               + E
Sbjct: 504 QVFERMPEKNEISWTVMIQGLAESGF-------------------------------AVE 532

Query: 296 ALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG---- 350
           +L LF EM+ T  + P+ +  +  L ACS  G +D G+W    +EK       V G    
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEK-------VYGIKPK 585

Query: 351 ----TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
               T +VD+ ++ G + +A +    +P +  +  + A++ G
Sbjct: 586 GKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 156/359 (43%), Gaps = 64/359 (17%)

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G  +H ++ ++G +    +A  L+ +Y+ C K    ++I        +V    MI  Y +
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 259 FGFLDIARKIFDDLPE--------------KY-----------------VVPWNAIIGGY 287
           +G L  AR +FD++PE              KY                 VV W A I G+
Sbjct: 100 WGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGF 159

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF---- 343
           V+   + EAL LF  +  +G++P+ VT    + AC +LG    G+ I   + K  F    
Sbjct: 160 VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYL 219

Query: 344 ---------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
                                        +VV  TA++D Y + G++ +A ++F EMPER
Sbjct: 220 SVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER 279

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N ++++A+I   +  G A +A+  FS+M+  G  P+   F   LSA      +  G    
Sbjct: 280 NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIH 339

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             ++ I  +   +   S ++DL  + G  ++  +L+  + +  +VV W ++     ++G
Sbjct: 340 GHVTKI-GIDKDVFIGSSLIDLYCKCGKPDDG-RLVFDLILEKNVVCWNSMVGGYSING 396


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 295/489 (60%), Gaps = 1/489 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H++KL      ++   ++ +  +   +  A  +F +    N+ S+N++I  +  + 
Sbjct: 25  KIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNH 84

Query: 160 FPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
               AI +F  M   +   PD+ T   ++ +CA L    LG+++H ++ + G        
Sbjct: 85  KHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITE 144

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NAL+DMY KCG +  A ++++ M  +  VS  ++I G+ + G +  AR++FD++P + +V
Sbjct: 145 NALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIV 204

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W  +I GY +     +AL +F EMQ  GI+PD ++ +  L AC+QLGAL+ G WIH++ 
Sbjct: 205 SWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYS 264

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
           EK  F  N  +  ALV+MYAKCG I +A  +F++M E++ ++++ +IGGLA HGK   AI
Sbjct: 265 EKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAI 324

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             F +M   G+ P+ +TF+G+LSAC H GL +EG +YF  M   + L P+++HY C+VDL
Sbjct: 325 RVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDL 384

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGRSG +E+A   I  MPM  D   W +L  +CR+H N+ I   A  +LL+L+P++SG Y
Sbjct: 385 LGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNY 444

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           VLLAN+Y   + WE    VRK++  + ++KTPGCS IEVN L+ EF+  D S P  ++++
Sbjct: 445 VLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSKPFSQEVF 504

Query: 579 DCLVQLTRH 587
             L  LT H
Sbjct: 505 WILKGLTLH 513



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 218/444 (49%), Gaps = 74/444 (16%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL 65
           L    F  ++++  C      ++DY T I   ++NPN FS+N  IR +    K   A+ +
Sbjct: 35  LSQSNFLVTKMLDLC--DNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITV 92

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           + QML      PD FT+P + K CA L  R LG ++  HV K G        NA+I ++ 
Sbjct: 93  FNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYT 152

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVR--------------------------SG 159
            CGD+  A  V++E   R+ VSWNSLI+G VR                          +G
Sbjct: 153 KCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMING 212

Query: 160 FPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           + R     +A+ +FR+MQ+  +EPDE+++I ++ ACAQL  L +G+ IH Y  +SG    
Sbjct: 213 YARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKN 272

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + NAL++MY KCG ++ A  +F+ M+ K V+S +TMI G A  G              
Sbjct: 273 AGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHG-------------- 318

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
                      GY        A+ +F +MQ  G+ P+ VT V  LSAC+  G  ++G+  
Sbjct: 319 ----------KGYA-------AIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGL-- 359

Query: 335 HRFIE--KENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLA 389
            R+ +  + +++L   +     LVD+  + G + +AL    +MP + +S T+ +++    
Sbjct: 360 -RYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCR 418

Query: 390 LHGKALDAISYFSEMIGVGLMPDE 413
           +H     A+    +++   L P+E
Sbjct: 419 IHHNLEIAVVAMEQLL--KLEPEE 440


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/539 (37%), Positives = 302/539 (56%), Gaps = 32/539 (5%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I G+ + G  + A+ L  +M   G  RPD+ T   +    A   L  +G  + G+V
Sbjct: 99  WNTMISGYAQNGFAKVALMLVLRMSEEG-HRPDSITIVSILPAVADTRLLRIGMAVHGYV 157

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           L+ GF+  + V  A++ ++  CG + +A  +FD    R +VSWNS+I+G+V+SG    A+
Sbjct: 158 LRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAM 217

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            +F+ M  E V+P  VT++G + ACA L DL  G+ +H  + +  L   V + N+L+ MY
Sbjct: 218 LIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMY 277

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KC ++                               DIA  IF +L  K +V WNA+I 
Sbjct: 278 SKCKRV-------------------------------DIAADIFKNLRNKTLVSWNAMIL 306

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY Q     EAL  F EMQ+  IKPD+ T V  + A ++L       WIH  + +   + 
Sbjct: 307 GYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDK 366

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           NV + TALVDMYAKCG I  A ++F  M  R+ +T+ A+I G   HG    ++  F EM 
Sbjct: 367 NVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMK 426

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
              + P++ITFL  LSAC H GLV+EG  +F  M   + + P + HY  MVDLLGR+G L
Sbjct: 427 KGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRL 486

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
            +A   I+ MP+   + V+GA+  AC++H NV +GE+AA ++ +L+P D G +VLLAN+Y
Sbjct: 487 NQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIY 546

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             ++MW +  KVR +ME+ G++KTPGCS +E+   ++ F     SHP+ ++IY  L  L
Sbjct: 547 ATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETL 605



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 234/502 (46%), Gaps = 36/502 (7%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           ++G+ ++  +  A+  + +M ++   RP  + +  L K+C        G EI G V+  G
Sbjct: 2   LKGYAKSSSLDSALSFFSRM-KHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
           F  +++    V++++  C  +  A N+FD    R+LV WN++I+G+ ++GF + A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            M  E   PD +T++ ++ A A    L +G  +H Y+  +G    V ++ AL+DMY KCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +  A  IFD M ++TVVS  +MI GY + G  + A  IF                    
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIF-------------------- 220

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
                       +M   G++P  VT +  L AC+ LG L+ G ++H+ +++   + +V +
Sbjct: 221 -----------QKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSV 269

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             +L+ MY+KC  +  A  +F  +  +  +++ A+I G A +G   +A++ F EM    +
Sbjct: 270 MNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNI 329

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD  T + ++ A     +  + +     +   F L   +   + +VD+  + G +  A 
Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTAR 388

Query: 470 QLIRSMPMAADVVVWGALFFACRLH--GNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527
           +L   M  A  V+ W A+      H  G  S+     MK   + P D      L+     
Sbjct: 389 KLFDMMN-ARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHS 447

Query: 528 SNMWEEAGKVRKMMEERGVEKT 549
             + E       M ++ G+E T
Sbjct: 448 GLVEEGLCFFESMKKDYGIEPT 469



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 159/348 (45%), Gaps = 33/348 (9%)

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           ++ G+ +S     A+  F  M+ + V P       ++  C    DL  G+EIH  +  SG
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
            +  +     +++MY KC ++  A  +FD M  + +V   TMI GYA+ GF         
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGF--------- 111

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                                 +K AL L   M   G +PD++T V  L A +    L  
Sbjct: 112 ----------------------AKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G+ +H ++ +  F   V + TALVDMY+KCG+++ A  +F  M  R  +++ ++I G   
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            G A  A+  F +M+  G+ P  +T +G L AC   G ++ G K+  ++    +L   + 
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDVS 268

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
             + ++ +  +   ++ A  + +++     +V W A+      +G V+
Sbjct: 269 VMNSLISMYSKCKRVDIAADIFKNLRNKT-LVSWNAMILGYAQNGCVN 315



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 12/245 (4%)

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           ++ GY ++     AL+ F  M+   ++P      + L  C     L  G  IH  +    
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
           F+ N+   T +V+MYAKC  I  A  +F  MPER+ + +  +I G A +G A  A+    
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 403 EMIGVGLMPDEITFLGILSACCHG-----GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
            M   G  PD IT + IL A         G+   G    A   S+  +S      + +VD
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVS------TALVD 174

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           +  + G +  A  +   M     VV W ++       G+         K+L+   Q + +
Sbjct: 175 MYSKCGSVSIARVIFDGMDHRT-VVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNV 233

Query: 518 YVLLA 522
            V+ A
Sbjct: 234 TVMGA 238


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/481 (39%), Positives = 283/481 (58%), Gaps = 3/481 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGD---LGLACNVFDESCVRNLVSWNSLINGFV 156
           +I   +LK G   D Y     +   +S      L  A  VFD     +   WN +I GF 
Sbjct: 32  QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
            S  P  ++ L++ M       +  T   ++ AC+ L       +IH  I++ G    V 
Sbjct: 92  CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVY 151

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
             N+L++ Y   G  + A  +FD +     VS  ++I GY K G +DIA  +F  + EK 
Sbjct: 152 AVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKN 211

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            + W  +I GYVQA  +KEAL LFHEMQ + ++PD V+  + LSAC+QLGAL+ G WIH 
Sbjct: 212 AISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 271

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           ++ K    ++ VLG  L+DMYAKCG + +AL+VF  + +++   +TA+I G A HG   +
Sbjct: 272 YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGRE 331

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           AIS F EM  +G+ P+ ITF  +L+AC + GLV+EG+  F  M   + L P ++HY C+V
Sbjct: 332 AISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIV 391

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           DLLGR+GLL+EA++ I+ MP+  + V+WGAL  ACR+H N+ +GE     L+ +DP   G
Sbjct: 392 DLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGG 451

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            YV  AN++     W++A + R++M+E+GV K PGCS+I + G  +EF+  D+SHPE+E+
Sbjct: 452 RYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEK 511

Query: 577 I 577
           I
Sbjct: 512 I 512



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 214/426 (50%), Gaps = 68/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKM 59
           M  TGL+   +A ++ ++FC  S S +     +I+F+    P++F WN+ IRGF  + + 
Sbjct: 37  MLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEP 96

Query: 60  REAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             ++ LY++ML    + P N +T+P L K C++L       +I   + KLG++ D+Y  N
Sbjct: 97  ERSLLLYQRML--CSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVN 154

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG------------------- 159
           ++I+ +   G+  LA  +FD     + VSWNS+I G+V++G                   
Sbjct: 155 SLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAIS 214

Query: 160 ------------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
                         +EA++LF +MQ   VEPD V++   +SACAQL  L  G+ IH Y++
Sbjct: 215 WTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLN 274

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++ + +   L   L+DMY KCG++E A E+F ++  K+V + T +I GYA  G       
Sbjct: 275 KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG------- 327

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                     +EA++ F EMQ  GIKP+ +T    L+ACS  G 
Sbjct: 328 ------------------------HGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363

Query: 328 LDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G  I   +E++ N    +     +VD+  + G + +A +   EMP + N++ + A++
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423

Query: 386 GGLALH 391
               +H
Sbjct: 424 KACRIH 429


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 311/543 (57%), Gaps = 34/543 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  I GF   GK+ EA++++ +M R      D+ T   L  +C  L     G  I  +
Sbjct: 207 TWNAMISGFYLNGKVAEALEVFDEM-RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVY 265

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +KLG + D++V NA+I+++   G+L  A  +F++  VR++VSWNSL+  F ++  P  A
Sbjct: 266 AIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIA 325

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL-TVPLANALMD 223
           + ++  M    V PD +T++ + S  A+L +    R IH +++     L  + L NA++D
Sbjct: 326 LGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIID 385

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY                               AK GF+D ARK+F+ LP K V+ WN++
Sbjct: 386 MY-------------------------------AKLGFIDSARKVFEGLPVKDVISWNSL 414

Query: 284 IGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY Q   + EA+ ++  M+  +G  P+  T V  L+A SQLGAL  G+  H  + K  
Sbjct: 415 ITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF 474

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
              ++ + T LVDMY KCG +A AL +F+E+P ++S+++ AII    LHG  L A+  F 
Sbjct: 475 LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFK 534

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM   G+ PD ITF+ +LSAC H GLVDEG+  F  M   + + P LKHY CMVDL GR+
Sbjct: 535 EMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRA 594

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G LE+A   +++MP+  DV VWGAL  ACR+H NV +    +  LL+++ ++ G YVLL+
Sbjct: 595 GHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLS 654

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y     WE   +VR +  +RG++KTPG SSIEV+  +  F   +++HP+ E+IY  L 
Sbjct: 655 NIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELR 714

Query: 583 QLT 585
            LT
Sbjct: 715 NLT 717



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/526 (29%), Positives = 267/526 (50%), Gaps = 49/526 (9%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
            +Q  + ++WN  I  +   G    AVD + + L     + D++T+P + + C +L    
Sbjct: 100 QIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD-- 157

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G ++   VLKLGF+ D+Y+  + IH +   G + LACN+FD   +R++ +WN++I+GF 
Sbjct: 158 -GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFY 216

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
            +G   EA+ +F +M+ + V  D VT+  ++  C QL+D+  G  IH Y  + GL   + 
Sbjct: 217 LNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLF 276

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + NAL++MY K G+L SAE IF+ M  + +VS                            
Sbjct: 277 VCNALINMYAKFGELRSAETIFNQMKVRDIVS---------------------------- 308

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              WN+++  + Q K+   AL ++++M + G+ PD +T V   S  ++LG       IH 
Sbjct: 309 ---WNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHG 365

Query: 337 FIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           F+ +  + L ++ LG A++DMYAK G I  A +VF  +P ++ +++ ++I G + +G A 
Sbjct: 366 FVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLAN 425

Query: 396 DAISYFSEM-IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
           +AI  +S M    G +P++ T++ IL+A    G + +G K   Q+   F L   +   +C
Sbjct: 426 EAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTC 484

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ- 513
           +VD+ G+ G L +A  L   +P  +  V W A+     LHG    G +A     E+  + 
Sbjct: 485 LVDMYGKCGKLADALSLFYEVPHQSS-VSWNAIISCHGLHG---YGLKAVKLFKEMQSEG 540

Query: 514 ---DSGIYVLLANMYRDSNMWEEAGKVRKMMEE----RGVEKTPGC 552
              D   +V L +    S + +E     ++M+E    R   K  GC
Sbjct: 541 VKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGC 586



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 125/247 (50%), Gaps = 2/247 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   +   +  SWN  I G+ + G   EA+D+Y  M    G  P+  T+  +  
Sbjct: 393 IDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILT 452

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             + LG    G +  G ++K     D++V   ++ ++  CG L  A ++F E   ++ VS
Sbjct: 453 AHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS 512

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+     G+  +A++LF++MQ E V+PD +T + ++SAC+    ++ G+     + 
Sbjct: 513 WNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQ 572

Query: 208 ES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG-FLDIA 265
           E+ G+  ++     ++D++ + G LE A     +M  +  VS    ++G  +    +++ 
Sbjct: 573 ETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELV 632

Query: 266 RKIFDDL 272
           R + D L
Sbjct: 633 RTVSDHL 639



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 14/274 (5%)

Query: 224 MYVKCGKLESAEEIFDSMV----NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +++ C K+  A+++   +V     +++     +I  YA  G +  AR  FD +  K V  
Sbjct: 49  IFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYT 108

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           WN++I  Y +      A+  F+E  +T  ++ D  T    + AC   G LDDG  +H  +
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLV 165

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K  F  +V +  + +  Y++ G ++ A  +F  M  R+  T+ A+I G  L+GK  +A+
Sbjct: 166 LKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEAL 225

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MV 456
             F EM    +  D +T   +L  C    L D        + +I +L  +   + C  ++
Sbjct: 226 EVFDEMRFKSVSMDSVTISSLLPICVQ--LDDIISGVLIHVYAI-KLGLEFDLFVCNALI 282

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           ++  + G L  AE +   M +  D+V W +L  A
Sbjct: 283 NMYAKFGELRSAETIFNQMKV-RDIVSWNSLLAA 315


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 331/594 (55%), Gaps = 38/594 (6%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N +   ++L+ + + +  SW   I G+ + G    A+ ++ +M+      P  FT   + 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISER-VPPSQFTVSNVL 149

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL- 145
             CA+     +G +I   V+KLG    + V  ++++++  CGD  +A  VFD   V+N+ 
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 146 ------------------------------VSWNSLINGFVRSGFPREAIRLFRDMQLE- 174
                                         VSWNS+I+G+ + G+  EA+ +F  M  E 
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEP 269

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            ++PD  T+  ++SACA LE LN+G++IH YI  +    +  + NAL+ MY K G +E A
Sbjct: 270 SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIA 329

Query: 235 EEIFD--SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
             I +     N  +++ T+++ GY K G +  AR+IF+ L ++ VV W A+I GYVQ   
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGL 389

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             +AL LF  M   G +P++ T    LS  S L  L+ G  IH    K   +    +  A
Sbjct: 390 WNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNA 449

Query: 353 LVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           L+ MYAK GNI  A +VF ++P  ++  +++T++I  LA HG   +AI+ F  M+ VG+ 
Sbjct: 450 LIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           PD IT++G+LSAC H GLV++GRKY+  M+ +  + P L HY+CM+DL GR+GLL+EA  
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
            I SMP+  D + WG+L  +C++H N  + + AA +LL +DP +SG Y+ LAN+Y     
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGK 628

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           WE A + RK+M++RGV K  G S I +   ++ F V D  HP+ ++IY  + ++
Sbjct: 629 WENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEI 682



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 223/466 (47%), Gaps = 68/466 (14%)

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F G  +   ++K G  + +Y+ N ++  +   G L  A +VFDE  +++  SWN+LI+G+
Sbjct: 27  FAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 156 VRSG-----------FPR--------------------EAIRLFRDMQLERVEPDEVTMI 184
            + G            P                      AI +F  M  ERV P + T+ 
Sbjct: 87  AKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVS 146

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++S+CA  + L++GR+IH ++ + GL   VP+A +L++MY KCG    A+ +FD M  K
Sbjct: 147 NVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK 206

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM- 303
            + +   +I  Y + G  ++A   F+ +P++ +V WN++I GY Q   + EALA+F +M 
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKML 266

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI------------------------- 338
               +KPD  T    LSAC+ L  L+ G  IH +I                         
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326

Query: 339 --------EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
                        NLN++  T+L+D Y K GN+  A ++F+++ +R+ + +TA+I G   
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKL 449
           +G   DA+  F  M+  G  P+  T   +LS      +++ G++  A  + +    +P +
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              + ++ +  ++G +  A+++        ++V W ++  A   HG
Sbjct: 447 T--NALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 187/397 (47%), Gaps = 41/397 (10%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++    +++D   GR +H  I + GL L V L N LM  Y K G L  A  +FD M  K+
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
             S  T+I GYAK G  +++R++  ++P+   V W AII GY Q      A+ +F +M +
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN--I 363
             + P   T  + LS+C+    LD G  IH F+ K      V + T+L++MYAKCG+  I
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 364 AK-----------------------------ALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           AK                             A   F +MP+R+ +++ ++I G +  G  
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 395 LDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY- 452
           L+A++ FS+M+    L PD  T   ILSAC +   ++ G++  A    I R   +     
Sbjct: 256 LEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY---ILRAETETSGAV 312

Query: 453 -SCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
            + ++ +  +SG +E A  ++     +  +++ + +L       GNV        KL + 
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD- 371

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             +D   +  +   Y  + +W +A ++ ++M   G E
Sbjct: 372 --RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPE 406


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 311/557 (55%), Gaps = 36/557 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N  +W + I  F + G  R+A+DL+  M  +G   PD FTY  +   C  L
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTEL 64

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDESCVRNLVSWN 149
           GL  LG ++   V++LG  +D+ V  +++ ++  C   G +  +  VF++    N++SW 
Sbjct: 65  GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 124

Query: 150 SLINGFVRSG-FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           ++I  + +SG   +EAI LF  M    + P+  +   ++ AC  L D   G +++ Y  +
Sbjct: 125 AIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 184

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G+     + N+L+ MY + G++E                                ARK 
Sbjct: 185 LGIASVNCVGNSLISMYARSGRMED-------------------------------ARKA 213

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD L EK +V +NAI+ GY +  +S+EA  LF+E+  TGI   A T    LS  + +GA+
Sbjct: 214 FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 273

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G  IH  + K  +  N  +  AL+ MY++CGNI  A QVF+EM +RN +++T++I G 
Sbjct: 274 GKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGF 333

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A HG A  A+  F +M+  G  P+EIT++ +LSAC H G++ EG+K+F  M     + P+
Sbjct: 334 AKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPR 393

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY+CMVDLLGRSGLL EA + I SMP+ AD +VW  L  ACR+HGN  +G  AA  +L
Sbjct: 394 MEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMIL 453

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           E +P D   Y+LL+N++  +  W++  K+RK M+ER + K  GCS IEV   ++ F V +
Sbjct: 454 EQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGE 513

Query: 569 KSHPELEQIYDCLVQLT 585
            SHP+  QIY  L QL 
Sbjct: 514 TSHPQAWQIYQELDQLA 530



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 192/380 (50%), Gaps = 37/380 (9%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM-REAVDLYKQMLRNGG 74
           + A CA   S  +D   K+   +   N  SW   I  + ++G+  +EA++L+ +M+ +G 
Sbjct: 95  MYAKCAADGS--VDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGH 151

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            RP++F++  + K C +L   + G +++ + +KLG      V N++I ++   G +  A 
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 211

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             FD    +NLVS+N++++G+ ++    EA  LF ++    +     T   ++S  A + 
Sbjct: 212 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 271

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            +  G +IH  + + G      + NAL+ MY +CG +E+A ++F+ M ++ V+S T+MI 
Sbjct: 272 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 331

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G+AK GF                               +  AL +FH+M  TG KP+ +T
Sbjct: 332 GFAKHGF-------------------------------ATRALEMFHKMLETGTKPNEIT 360

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEM 373
            V  LSACS +G + +G      + KE+  +  +   A +VD+  + G + +A++  + M
Sbjct: 361 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 374 P-ERNSLTYTAIIGGLALHG 392
           P   ++L +  ++G   +HG
Sbjct: 421 PLMADALVWRTLLGACRVHG 440



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 191/423 (45%), Gaps = 45/423 (10%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD+   RNLV+W  +I  F + G  R+AI LF DM+L    PD  T   ++SAC +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC---GKLESAEEIFDSMVNKTVVSC 249
           L  L LG+++H  +   GL L V +  +L+DMY KC   G ++ + ++F+ M    V+S 
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T +I  YA+ G  D                              KEA+ LF +M +  I+
Sbjct: 124 TAIITAYAQSGECD------------------------------KEAIELFCKMISGHIR 153

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+  +    L AC  L     G  ++ +  K        +G +L+ MYA+ G +  A + 
Sbjct: 154 PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 213

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  + E+N ++Y AI+ G A + K+ +A   F+E+   G+     TF  +LS     G +
Sbjct: 214 FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 273

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSC----MVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            +G +   ++     L    K   C    ++ +  R G +E A Q+   M    +V+ W 
Sbjct: 274 GKGEQIHGRL-----LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 327

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGI-YVLLANMYRDSNMWEEAGK-VRKMMEE 543
           ++      HG  +       K+LE   + + I YV + +      M  E  K    M +E
Sbjct: 328 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 387

Query: 544 RGV 546
            G+
Sbjct: 388 HGI 390



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 9/132 (6%)

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           A A +VF +MPERN +T+T +I   A  G A DAI  F +M   G +PD  T+  +LSAC
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLK-HYSC-MVDLLGR---SGLLEEAEQLIRSMPMA 478
              GL+  G++     S + RL   L     C +VD+  +    G ++++ ++   MP  
Sbjct: 62  TELGLLALGKQLH---SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-E 117

Query: 479 ADVVVWGALFFA 490
            +V+ W A+  A
Sbjct: 118 HNVMSWTAIITA 129


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 328/595 (55%), Gaps = 36/595 (6%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
             A ++  ++D   +    +   +S SW   I G+   G+  +A+ +  +M+R G   P 
Sbjct: 87  LSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREG-IEPS 145

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
            FT   +    A+      G ++   ++KLG   ++ V N++++++  CGD  +A  VFD
Sbjct: 146 QFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFD 205

Query: 139 ESCV-------------------------------RNLVSWNSLINGFVRSGFPREAIRL 167
              V                               R++V+WNS+I+G+ + G+   A+ +
Sbjct: 206 RMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDM 265

Query: 168 FRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           F  M  +  + PD  T+  ++SACA LE L +G +IH +I  +G  ++  + NAL+ MY 
Sbjct: 266 FSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYS 325

Query: 227 KCGKLESAEEIFDSMVNK--TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           +CG +E+A  + +    K   +   T ++ GY K G ++ A+ IFD L ++ VV W A+I
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMI 385

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q     EA+ LF  M     +P++ T    LS  S L +L  G  IH    K    
Sbjct: 386 VGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEI 445

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSE 403
            +V +  AL+ MYAK G+I  A + F  +  ER+++++T++I  LA HG A +A+  F  
Sbjct: 446 YSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+  GL PD IT++G+ SAC H GLV++GR+YF  M  + ++ P L HY+CMVDL GR+G
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           LL+EA++ I  MP+  DVV WG+L  ACR++ N+ +G+ AA +LL L+P++SG Y  LAN
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALAN 625

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +Y     WEEA K+RK M++  V+K  G S IEV   ++ F V D  HP+  +IY
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIY 680



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 207/453 (45%), Gaps = 68/453 (15%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N V+  +   GD+  +C  FD    R+ VSW ++I G+   G   +AIR+  +M  E +E
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P + T+  ++++ A    L  G+++H +I + GL   V ++N+L++MY KCG    A+ +
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD MV K + S   MI  + + G +D+A   F+ + E+ +V WN++I GY Q      AL
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 298 ALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
            +F +M + + + PD  T    LSAC+ L  L  G  IH  I    F+++ ++  AL+ M
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 357 YAKCGNIAKALQ---------------------------------VFHEMPERNSLTYTA 383
           Y++CG +  A +                                 +F  + +R+ + +TA
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTA 383

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-----------HGGLVDEG 432
           +I G   HG   +AI+ F  M+G    P+  T   +LS              HG  V  G
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 433 RKY-----------FAQMSSI---------FRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
             Y           +A+  SI          R       ++ M+  L + G  EEA +L 
Sbjct: 444 EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 473 RSMPMAA---DVVVWGALFFACRLHGNVSIGER 502
            +M M     D + +  +F AC   G V+ G +
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ 536



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 160/361 (44%), Gaps = 71/361 (19%)

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H  + +SGL  +V L N LM++Y K G    A ++FD M  +T  S  T++  YAK G 
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +D + + FD LP++  V W  +I GY    +  +A+ +  EM   GI+P   T  + L++
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN------------------- 362
            +    L+ G  +H FI K     NV +  +L++MYAKCG+                   
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 363 ---IAKALQV---------FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
              IA  +QV         F +M ER+ +T+ ++I G    G  L A+  FS+M+   ++
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 411 -PDEITFLGILSAC------CHG-----------------------------GLVDEGRK 434
            PD  T   +LSAC      C G                             G V+  R+
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
              Q  +      K++ ++ ++D   + G + EA+ +  S+    DVV W A+      H
Sbjct: 336 LIEQRGT---KDLKIEGFTALLDGYIKLGDMNEAKNIFDSLK-DRDVVAWTAMIVGYEQH 391

Query: 495 G 495
           G
Sbjct: 392 G 392


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 311/557 (55%), Gaps = 36/557 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N  +W + I  F + G  R+A+DL+  M  +G   PD FTY  +   C  L
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTEL 69

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDESCVRNLVSWN 149
           GL  LG ++   V++LG  +D+ V  +++ ++  C   G +  +  VF++    N++SW 
Sbjct: 70  GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 129

Query: 150 SLINGFVRSG-FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           ++I  + +SG   +EAI LF  M    + P+  +   ++ AC  L D   G +++ Y  +
Sbjct: 130 AIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 189

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G+     + N+L+ MY + G++E                                ARK 
Sbjct: 190 LGIASVNCVGNSLISMYARSGRMED-------------------------------ARKA 218

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD L EK +V +NAI+ GY +  +S+EA  LF+E+  TGI   A T    LS  + +GA+
Sbjct: 219 FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 278

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G  IH  + K  +  N  +  AL+ MY++CGNI  A QVF+EM +RN +++T++I G 
Sbjct: 279 GKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGF 338

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A HG A  A+  F +M+  G  P+EIT++ +LSAC H G++ EG+K+F  M     + P+
Sbjct: 339 AKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPR 398

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY+CMVDLLGRSGLL EA + I SMP+ AD +VW  L  ACR+HGN  +G  AA  +L
Sbjct: 399 MEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMIL 458

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           E +P D   Y+LL+N++  +  W++  K+RK M+ER + K  GCS IEV   ++ F V +
Sbjct: 459 EQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGE 518

Query: 569 KSHPELEQIYDCLVQLT 585
            SHP+  QIY  L QL 
Sbjct: 519 TSHPQAWQIYQELDQLA 535



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 192/380 (50%), Gaps = 37/380 (9%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM-REAVDLYKQMLRNGG 74
           + A CA   S  +D   K+   +   N  SW   I  + ++G+  +EA++L+ +M+ +G 
Sbjct: 100 MYAKCAADGS--VDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGH 156

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            RP++F++  + K C +L   + G +++ + +KLG      V N++I ++   G +  A 
Sbjct: 157 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 216

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             FD    +NLVS+N++++G+ ++    EA  LF ++    +     T   ++S  A + 
Sbjct: 217 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 276

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            +  G +IH  + + G      + NAL+ MY +CG +E+A ++F+ M ++ V+S T+MI 
Sbjct: 277 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 336

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G+AK GF                               +  AL +FH+M  TG KP+ +T
Sbjct: 337 GFAKHGF-------------------------------ATRALEMFHKMLETGTKPNEIT 365

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEM 373
            V  LSACS +G + +G      + KE+  +  +   A +VD+  + G + +A++  + M
Sbjct: 366 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 374 P-ERNSLTYTAIIGGLALHG 392
           P   ++L +  ++G   +HG
Sbjct: 426 PLMADALVWRTLLGACRVHG 445



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 191/423 (45%), Gaps = 45/423 (10%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD+   RNLV+W  +I  F + G  R+AI LF DM+L    PD  T   ++SAC +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC---GKLESAEEIFDSMVNKTVVSC 249
           L  L LG+++H  +   GL L V +  +L+DMY KC   G ++ + ++F+ M    V+S 
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T +I  YA+ G  D                              KEA+ LF +M +  I+
Sbjct: 129 TAIITAYAQSGECD------------------------------KEAIELFCKMISGHIR 158

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+  +    L AC  L     G  ++ +  K        +G +L+ MYA+ G +  A + 
Sbjct: 159 PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 218

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  + E+N ++Y AI+ G A + K+ +A   F+E+   G+     TF  +LS     G +
Sbjct: 219 FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 278

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSC----MVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            +G +   ++     L    K   C    ++ +  R G +E A Q+   M    +V+ W 
Sbjct: 279 GKGEQIHGRL-----LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 332

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGI-YVLLANMYRDSNMWEEAGK-VRKMMEE 543
           ++      HG  +       K+LE   + + I YV + +      M  E  K    M +E
Sbjct: 333 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 392

Query: 544 RGV 546
            G+
Sbjct: 393 HGI 395



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 9/132 (6%)

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           A A +VF +MPERN +T+T +I   A  G A DAI  F +M   G +PD  T+  +LSAC
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLK-HYSC-MVDLLGR---SGLLEEAEQLIRSMPMA 478
              GL+  G++     S + RL   L     C +VD+  +    G ++++ ++   MP  
Sbjct: 67  TELGLLALGKQLH---SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-E 122

Query: 479 ADVVVWGALFFA 490
            +V+ W A+  A
Sbjct: 123 HNVMSWTAIITA 134


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 311/549 (56%), Gaps = 35/549 (6%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + LF+ + + +  SWN  I G+++ G     ++++ +ML   G   D  T   +F  C
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLV-FGVDIDLATMVNVFVAC 362

Query: 90  ASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           A++G   LG  +  + +K    D ++  +N ++ ++  CGDL  A  VF+    + +VSW
Sbjct: 363 ANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSW 422

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
            S+I G+VR G    AI+LF +M+   V PD   +  +++ACA   +L  G+ +H YI E
Sbjct: 423 TSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRE 482

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + L     ++NAL DMY KCG ++ A ++                               
Sbjct: 483 NNLETNSFVSNALTDMYAKCGSMKDAHDV------------------------------- 511

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F  + +K V+ WN +IGGY +     EAL LF EMQ    KPD  T    L AC+ L AL
Sbjct: 512 FSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAAL 570

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           D G  IH +  +  ++ +  +  A+VDMY KCG +  A  +F  +P ++ +++T +I G 
Sbjct: 571 DKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGY 630

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
            +HG   +AI+ F++M   G+ PDE++F+ IL AC H GL+DEG K F  M    ++ P 
Sbjct: 631 GMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPN 690

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           L+HY+CMVDLL R+G L +A + I++MP+  D  +WGAL   CR+H +V + E+ A ++ 
Sbjct: 691 LEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIF 750

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           EL+P+++G YVLLAN+Y ++  WEE  K+RK + +RG++K PGCS IE+ G +  F+  D
Sbjct: 751 ELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGD 810

Query: 569 KSHPELEQI 577
            S P+ ++I
Sbjct: 811 CSKPQAKKI 819



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 195/440 (44%), Gaps = 43/440 (9%)

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
           F E G ++ A++L   +  +  +  D   Y  + ++CA       G  +   +   G  +
Sbjct: 127 FCEVGDLKNAMEL---LCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMI 183

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D  +   ++ ++V CGDL     VFD+     +  WN +I+ +  SG   E+I LF+ M 
Sbjct: 184 DGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQML 243

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              ++P+  T   ++   A +  +  GR++H  I + G      + N+L+  Y    K+ 
Sbjct: 244 ELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVR 303

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A+++FD + ++ V+S  +MI GY K G  D                             
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDD----------------------------- 334

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF-IEKENFNLNVVLGT 351
               + +F +M   G+  D  T V+   AC+ +G L  G  +H + I+    +  V    
Sbjct: 335 --RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
            L+DMY+KCG++  A++VF  M E+  +++T++I G    G +  AI  F EM   G++P
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP 452

Query: 412 DEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           D      IL+AC   G +  G+    Y  + +    L       + + D+  + G +++A
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENN----LETNSFVSNALTDMYAKCGSMKDA 508

Query: 469 EQLIRSMPMAADVVVWGALF 488
             +   M    DV+ W  + 
Sbjct: 509 HDVFSHMK-KKDVISWNTMI 527


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 311/557 (55%), Gaps = 36/557 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N+ +W + I   ++ G   EA+DL+ +M+ +G   PD FT   +   CA++
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSG-YEPDRFTLSGVISACANM 284

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDESCVRNLVSWN 149
            L  LG ++    ++ G  +D  V   +I+++  C   G +  A  +FD+    N+ SW 
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 150 SLINGFV-RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           ++I G+V + G+  EA+ LFR M L  V P+  T    + ACA L  L +G ++  +  +
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK 404

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G +    +AN+L+ MY + G++                               D ARK 
Sbjct: 405 LGFSSVNCVANSLISMYARSGRI-------------------------------DDARKA 433

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD L EK ++ +N +I  Y +   S+EAL LF+E++  G+   A T    LS  + +G +
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G  IH  + K    LN  +  AL+ MY++CGNI  A QVF +M +RN +++T+II G 
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A HG A  A+  F +M+  G+ P+ +T++ +LSAC H GLV+EG K+F  M +   + P+
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY+CMVD+LGRSG L EA Q I SMP  AD +VW     ACR+HGN+ +G+ AA  ++
Sbjct: 614 MEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           E +P D   Y+LL+N+Y  ++ W+E   +RK M+E+ + K  GCS +EV   +++F V D
Sbjct: 674 EQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGD 733

Query: 569 KSHPELEQIYDCLVQLT 585
            SHP+  +IYD L  L+
Sbjct: 734 TSHPKAAEIYDELQNLS 750



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 203/399 (50%), Gaps = 49/399 (12%)

Query: 7   ISHGFAPSRLIAFCAI------SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM- 59
           I HG    R +  C I      S   ++    KI   + + N FSW   I G+++ G   
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            EA+DL++ M+      P++FT+    K CA+L    +G ++F H +KLGF     V N+
Sbjct: 358 EEALDLFRGMILTH-VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I ++   G +  A   FD    +NL+S+N++I+ + ++    EA+ LF +++ + +   
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++S  A +  +  G +IH  + +SGL L   + NAL+ MY +CG +ESA ++F+
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M ++ V+S T++I G+AK GF                               + +AL L
Sbjct: 537 DMEDRNVISWTSIITGFAKHGF-------------------------------ATQALEL 565

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG-----TALV 354
           FH+M   G++P+ VT +  LSACS +G +++G W H    K  +  + V+        +V
Sbjct: 566 FHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG-WKHF---KSMYTEHGVIPRMEHYACMV 621

Query: 355 DMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHG 392
           D+  + G++++A+Q  + MP + ++L +   +G   +HG
Sbjct: 622 DILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHG 660



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 219/472 (46%), Gaps = 42/472 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW+  +  F        A+  +  M+ NG   P+ + +    + C++     +G  IFG 
Sbjct: 135 SWSAMVSCFANNNMGFRALLTFVDMIENG-YYPNEYCFAAATRACSTAEFVSVGDSIFGF 193

Query: 105 VLKLGF-DVDMYVHNAVIHVFVSC-GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           V+K G+   D+ V   +I +FV   GDL  A  VF++   RN V+W  +I   ++ G+  
Sbjct: 194 VVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EAI LF +M L   EPD  T+ G++SACA +E L LG+++H      GLTL   +   L+
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 223 DMYVKC---GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +MY KC   G + +A +IFD +++  V S T MI GY +                     
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQ--------------------- 352

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                GGY      +EAL LF  M  T + P+  T    L AC+ L AL  G  +     
Sbjct: 353 ----KGGY-----DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV 403

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K  F+    +  +L+ MYA+ G I  A + F  + E+N ++Y  +I   A +  + +A+ 
Sbjct: 404 KLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALE 463

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MVD 457
            F+E+   G+     TF  +LS     G + +G +  A+   + +   KL    C  ++ 
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHAR---VIKSGLKLNQSVCNALIS 520

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           +  R G +E A Q+   M    +V+ W ++      HG  +       K+LE
Sbjct: 521 MYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLE 571



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 130/553 (23%), Positives = 232/553 (41%), Gaps = 85/553 (15%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           NPN  +  +     +  G++ +A+   + M+  G + PD  TY L  K C       +G 
Sbjct: 30  NPNPLTGRLIQE--INNGRLHKAISTLEHMVHQG-SHPDLQTYSLFLKKCIRTRSFDIGT 86

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD-ESCVRNLVSWNSLINGFVRS 158
            +   + +    +D    N++I ++  CG    A ++F      R+L+SW+++++ F  +
Sbjct: 87  LVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANN 146

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPL 217
                A+  F DM      P+E        AC+  E +++G  I  ++ ++G L   V +
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCV 206

Query: 218 ANALMDMYVKC-GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
              L+DM+VK  G L SA ++F+ M  +  V+ T MI    +FG+               
Sbjct: 207 GCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY--------------- 251

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                           + EA+ LF EM  +G +PD  T    +SAC+ +  L  G  +H 
Sbjct: 252 ----------------AGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 337 FIEKENFNLNVVLGTALVDMYAKC---GNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
              +    L+  +G  L++MYAKC   G++  A ++F ++ + N  ++TA+I G    G 
Sbjct: 296 QAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGG 355

Query: 394 -ALDAISYFSEMIGVGLMPDEITFLGILSACCH--------------------------- 425
              +A+  F  MI   ++P+  TF   L AC +                           
Sbjct: 356 YDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415

Query: 426 --------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL---IRS 474
                    G +D+ RK F  +         L  Y+ ++D   ++   EEA +L   I  
Sbjct: 416 SLISMYARSGRIDDARKAFDIL-----FEKNLISYNTVIDAYAKNLNSEEALELFNEIED 470

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEE 533
             M A    + +L       G +  GE+   ++++   + +  +   L +MY      E 
Sbjct: 471 QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIES 530

Query: 534 AGKVRKMMEERGV 546
           A +V + ME+R V
Sbjct: 531 AFQVFEDMEDRNV 543



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 5/245 (2%)

Query: 4   TGLISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           T  +  GF+    +A   IS    S  +D   K    +   N  S+N  I  + +     
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA++L+ + + + G     FT+  L    AS+G    G +I   V+K G  ++  V NA+
Sbjct: 460 EALELFNE-IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  CG++  A  VF++   RN++SW S+I GF + GF  +A+ LF  M  E V P+ 
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNL 578

Query: 181 VTMIGMVSACAQLEDLNLG-REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           VT I ++SAC+ +  +N G +      +E G+   +     ++D+  + G L  A +  +
Sbjct: 579 VTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFIN 638

Query: 240 SMVNK 244
           SM  K
Sbjct: 639 SMPYK 643


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 300/486 (61%), Gaps = 4/486 (0%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   +++   D D +V   +I V  +   +  A +VF      N+  + ++I+GFV SG 
Sbjct: 48  IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             + + L+  M    V PD   +  ++ AC    DL + REIH  + + G   +  +   
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLK 163

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           +M++Y K G+L +A+++FD M ++  V+ T MI  Y++ GF+  A ++F D+  K  V W
Sbjct: 164 MMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCW 223

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I G V+ K   +AL LF EMQ   +  +  T V  LSACS LGAL+ G W+H F+E 
Sbjct: 224 TAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVEN 283

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +   L+  +G AL++MY++CG+I +A +VF  M +++ ++Y  +I GLA+HG +++AI+ 
Sbjct: 284 QRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINE 343

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F +M+  G  P+++T + +L+AC HGGL+D G + F  M  +F + P+++HY C+VDLLG
Sbjct: 344 FRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLG 403

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R G LEEA + I ++P+  D ++ G L  AC++HGN+ +GE+ A +L E +  DSG YVL
Sbjct: 404 RVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVL 463

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N+Y  S  W+E+ ++R+ M + G+EK PGCS+IEV+  ++EF+V D +HP  E IY  
Sbjct: 464 LSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQR 523

Query: 581 LVQLTR 586
           L +L R
Sbjct: 524 LQELNR 529



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 137/284 (48%), Gaps = 14/284 (4%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           +V+  ++  W   I G +   +M +A++L+++M +      + FT   +   C+ LG   
Sbjct: 214 DVKIKDTVCWTAMIDGLVRNKEMNKALELFREM-QMENVSANEFTAVCVLSACSDLGALE 272

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
           LG  +   V     ++  +V NA+I+++  CGD+  A  VF     ++++S+N++I+G  
Sbjct: 273 LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLA 332

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTV 215
             G   EAI  FRDM      P++VT++ +++AC+    L++G E+   +     +   +
Sbjct: 333 MHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQI 392

Query: 216 PLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
                ++D+  + G+LE A    +++ +    +   T++      G +++  KI   L E
Sbjct: 393 EHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFE 452

Query: 275 K-------YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
                   YV+  N     Y  + + KE+  +   M+ +GI+ +
Sbjct: 453 SENPDSGTYVLLSNL----YASSGKWKESTEIRESMRDSGIEKE 492


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/485 (40%), Positives = 286/485 (58%), Gaps = 11/485 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC------GD-LGLACNVFDESCVRNLVSWNSLI 152
           +I   +LK G   D Y     I  F+SC       D L  A  VFD     +   WN +I
Sbjct: 61  QIHARMLKTGLIQDSYA----ITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            GF  S  P  ++ L++ M       +  T   ++ AC+ L  L    +IH  I++ G  
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYE 176

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V   N+L++ Y   G  + A  +FD +     VS  ++I GYAK G +DIA  +F  +
Sbjct: 177 NDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKM 236

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            EK  + W  +I GYVQA   KEAL LFHEMQ + ++PD V+  + LSAC+QLGAL+ G 
Sbjct: 237 VEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 296

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           WIH ++ K    ++ VLG  L+DMYAKCG++ +AL+VF  +  ++   +TA+I G A HG
Sbjct: 297 WIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHG 356

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +AIS F EM  +G+ P+ ITF  +L+AC + GLV+EG+  F  M   + L P ++HY
Sbjct: 357 HGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHY 416

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
            C+VDLL R+GLL+EA++ I+ MP+  + V+WGAL  ACR+H N+ +GE     L+ +DP
Sbjct: 417 GCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 476

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
              G YV  AN++     W++A + R++M+E+GV K PGCS+I + G  +EF+  D+SHP
Sbjct: 477 YHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHP 536

Query: 573 ELEQI 577
           E+E+I
Sbjct: 537 EIEKI 541



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 214/426 (50%), Gaps = 68/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKM 59
           M  TGLI   +A ++ ++ C  S S +     +I+F+    P++F WN+ IRGF  + + 
Sbjct: 66  MLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEP 125

Query: 60  REAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             ++ LY++ML    + P N +T+P L K C++L       +I   + KLG++ D+Y  N
Sbjct: 126 ERSLLLYQRML--CCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVN 183

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL--------------------------- 151
           ++I+ + + G+  LA  +FD     + VSWNS+                           
Sbjct: 184 SLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAIS 243

Query: 152 ----INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
               I+G+V++G  +EA++LF +MQ   VEPD V++   +SACAQL  L  G+ IH Y++
Sbjct: 244 WTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLT 303

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++ + +   L   L+DMY KCG +  A E+F ++  K+V + T +I GYA  G       
Sbjct: 304 KTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHG------- 356

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                     +EA++ F EMQ  GIKP+ +T    L+ACS  G 
Sbjct: 357 ------------------------HGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGL 392

Query: 328 LDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G  I   +E++ N    +     +VD+ ++ G + +A +   EMP + N++ + A++
Sbjct: 393 VEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALL 452

Query: 386 GGLALH 391
               +H
Sbjct: 453 KACRIH 458


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 327/582 (56%), Gaps = 36/582 (6%)

Query: 39  QNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           +NP  N  SW  AI GF+  G   EA+ L+ ++L +G  RP++ T+  + + C  LG   
Sbjct: 143 RNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDVTFTSVVRACGELGDFG 201

Query: 97  LGYEIFGHVLKLGFDVDMYVHN-------------------------------AVIHVFV 125
           LG  I G V+K GF+  + V N                               A++  +V
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
             GDL  A  +FDE   RN +SW+++I  + +SG+  EA++LF  M  E  +P+      
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
            +SA A L  L+ G  IH ++++ G+   V + ++L+D+Y KCGK +    +FD ++ K 
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VV   +M+ GY+  G L+   ++F+ +PEK  V W  II GY++ ++ ++ L +F+ +  
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           +G  P+  T    L AC+ + +LD G+ +H  I K     ++ +GTAL DMYAKCG+I  
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACC 424
           + QVF  MPE+N +++T +I GLA  G A++++  F EM     + P+E+  L +L AC 
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLVD+G  YF  M  ++ + PK KHY+C+VDLL RSG L EAE+ IR++P   +   W
Sbjct: 562 HCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAW 621

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL   C+ + +  I ER A KL +L   +S  YVLL+N+Y  +  W +   +RK+M E+
Sbjct: 622 AALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREK 681

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           G++K+ GCS +EV   ++ F   D SH +  +IY  L QL R
Sbjct: 682 GLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTL-QLLR 722



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 208/433 (48%), Gaps = 67/433 (15%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING------------------ 154
           D+ V N +I  +V  G+L  A  +FDE   RN VSW++LI+G                  
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 155 -------------FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
                        FVR+G   EA++LF  +    V P++VT   +V AC +L D  LG  
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           I   + ++G    + ++N+L+ + ++ G+++ A  +FD M  + VVS T ++  Y + G 
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           L  AR+IFD++PE+  + W+A+I  Y Q+  ++EAL LF +M   G KP+       LSA
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
            + L AL  GI IH  + K   + +V +G++L+D+Y KCG       VF  + E+N + +
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 382 TAIIGGLALHGKAL-------------------------------DAISYFSEMIGVGLM 410
            +++GG +++G+                                   +  F+ ++  G  
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEA 468
           P++ TF  +L AC     +D+G     +   I +L  +   +  + + D+  + G +  +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGK---IIKLGIQYDIFVGTALTDMYAKCGDIGSS 502

Query: 469 EQLIRSMPMAADV 481
           +Q+   MP   ++
Sbjct: 503 KQVFERMPEKNEI 515



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 176/431 (40%), Gaps = 109/431 (25%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM------------------ 69
           +D   ++   ++  +  SW   +  ++ETG +REA  ++ +M                  
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQS 294

Query: 70  ------------LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
                       +   G +P+   +       ASL     G  I GHV K+G D D+++ 
Sbjct: 295 GYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIG 354

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-----------FP----- 161
           +++I ++  CG       VFD    +N+V WNS++ G+  +G            P     
Sbjct: 355 SSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDV 414

Query: 162 ---------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
                           + + +F  + +    P++ T   ++ ACA +  L+ G  +H  I
Sbjct: 415 SWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKI 474

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G+   + +  AL DMY KCG + S++++F+ M  K  +S T MI G A+ GF     
Sbjct: 475 IKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGF----- 529

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQL 325
                                     + E+L LF EM+ T  + P+ +  +  L ACS  
Sbjct: 530 --------------------------AVESLILFEEMERTSEVAPNELMLLSVLFACSHC 563

Query: 326 GALDDGIWIHRFIEKENFNLNVVLG--------TALVDMYAKCGNIAKALQVFHEMP-ER 376
           G +D G+W    +EK       V G        T +VD+ ++ G + +A +    +P + 
Sbjct: 564 GLVDKGLWYFNSMEK-------VYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQP 616

Query: 377 NSLTYTAIIGG 387
            +  + A++ G
Sbjct: 617 EANAWAALLSG 627



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 156/359 (43%), Gaps = 64/359 (17%)

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G  +H ++ ++G +    +A  L+ +Y+ C K    ++I        +V    MI  Y +
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 259 FGFLDIARKIFDDLPE--------------KY-----------------VVPWNAIIGGY 287
           +G L  AR +FD++PE              KY                 VV W A I G+
Sbjct: 100 WGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGF 159

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF---- 343
           V+   + EAL LF  +  +G++P+ VT    + AC +LG    G+ I   + K  F    
Sbjct: 160 VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYL 219

Query: 344 ---------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
                                        +VV  TA++D Y + G++ +A ++F EMPER
Sbjct: 220 SVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER 279

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N ++++A+I   +  G A +A+  FS+M+  G  P+   F   LSA      +  G    
Sbjct: 280 NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIH 339

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             ++ I  +   +   S ++DL  + G  ++  +L+  + +  +VV W ++     ++G
Sbjct: 340 GHVTKI-GIDKDVFIGSSLIDLYCKCGKPDDG-RLVFDLILEKNVVCWNSMVGGYSING 396


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 331/594 (55%), Gaps = 38/594 (6%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N +   ++L+ + + +  SW   I G+ + G    A+ ++ +M+      P  FT   + 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISER-VPPSQFTVSNVL 149

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL- 145
             CA+     +G +I   V+KLG    + V  ++++++  CGD  +A  VFD   V+N+ 
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 146 ------------------------------VSWNSLINGFVRSGFPREAIRLFRDMQLE- 174
                                         VSWNS+I+G+ + G+  EA+ +F  M  E 
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEP 269

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            ++PD  T+  ++SACA LE LN+G++IH YI  +    +  + NAL+ MY K G +E A
Sbjct: 270 SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIA 329

Query: 235 EEIFD--SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
             I +     N  +++ T+++ GY K G +  AR+IF+ L ++ VV W A+I GYVQ   
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGL 389

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             +AL LF  M   G +P++ T    LS  S L  L+ G  IH    K   +    +  A
Sbjct: 390 WNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNA 449

Query: 353 LVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           L+ MYAK GNI  A +VF ++P  ++  +++T++I  LA HG   +AI+ F  M+ VG+ 
Sbjct: 450 LIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           PD IT++G+LSAC H GLV++GRKY+  M+ +  + P L HY+CM+DL GR+GLL+EA  
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
            I SMP+  D + WG+L  +C++H N  + + AA +LL +DP +SG Y+ LAN+Y     
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGK 628

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           WE A + RK+M++RGV K  G S I +   ++ F V D  HP+ ++IY  + ++
Sbjct: 629 WENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEI 682



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 222/466 (47%), Gaps = 68/466 (14%)

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F G  +   ++K G  + +Y+ N ++  +   G L  A +VFDE  +++  SWN+LI+G+
Sbjct: 27  FAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 156 VRSG-----------FPR--------------------EAIRLFRDMQLERVEPDEVTMI 184
            + G            P                      AI +F  M  ERV P + T+ 
Sbjct: 87  AKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVS 146

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++S+CA  + L++GR+IH ++ + GL   VP+A +L++MY KCG    A+ +FD M  K
Sbjct: 147 NVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK 206

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM- 303
            + +   +I  Y + G  ++A   F+ +P++ +V WN++I GY Q   + EAL +F +M 
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKML 266

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI------------------------- 338
               +KPD  T    LSAC+ L  L+ G  IH +I                         
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326

Query: 339 --------EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
                        NLN++  T+L+D Y K GN+  A ++F+++ +R+ + +TA+I G   
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKL 449
           +G   DA+  F  M+  G  P+  T   +LS      +++ G++  A  + +    +P +
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              + ++ +  ++G +  A+++        ++V W ++  A   HG
Sbjct: 447 T--NALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 186/397 (46%), Gaps = 41/397 (10%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++    +++D   GR +H  I + GL L V L N LM  Y K G L  A  +FD M  K+
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
             S  T+I GYAK G  +++R++  ++P+   V W AII GY Q      A+ +F +M +
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN--I 363
             + P   T  + LS+C+    LD G  IH F+ K      V + T+L++MYAKCG+  I
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 364 AK-----------------------------ALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           AK                             A   F +MP+R+ +++ ++I G +  G  
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 395 LDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY- 452
           L+A+  FS+M+    L PD  T   ILSAC +   ++ G++  A    I R   +     
Sbjct: 256 LEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY---ILRAETETSGAV 312

Query: 453 -SCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
            + ++ +  +SG +E A  ++     +  +++ + +L       GNV        KL + 
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD- 371

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             +D   +  +   Y  + +W +A ++ ++M   G E
Sbjct: 372 --RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPE 406


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 309/552 (55%), Gaps = 43/552 (7%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  ++ I+  A +   ++ Y T +   V +P++F WN  + G+    +  + + 
Sbjct: 56  GLEQDSFLVTQFIS--ASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIIS 113

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           LY +M R  G  PD +T+P L KVCAS G    G  + G +L+ G D D+YV  ++++++
Sbjct: 114 LYVRMKREDGA-PDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLY 172

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
              G +  A  VFD    RN+VSW ++I G+   G   EA RLF D+  ER         
Sbjct: 173 GKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLF-DLMPER--------- 222

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
                                         V   NA++  Y+K G ++SAE+ FD M  K
Sbjct: 223 -----------------------------NVASWNAIIGGYMKMGDVKSAEKAFDEMPEK 253

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VVS TTMI GYAK G +  AR +F   PE+ ++ W+A+I GY Q  +  EA+  F EM 
Sbjct: 254 NVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMS 313

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN-VVLGTALVDMYAKCGNI 363
           +  +KPD       + ACSQLG LD   W+  +  + + +L    +  AL+DM AKCGN+
Sbjct: 314 SRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNM 373

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A+ +F +MP+R+ ++Y +++ GL++HG    A+S F  M+G  L PD++ F  IL+AC
Sbjct: 374 ERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTAC 433

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
              GLVDEG  YF  M   + + P + HY+C+VDLL RSG L+EA +LI+S+P+ +    
Sbjct: 434 SRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGA 493

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL  AC+L+ +  + E  A +L+E++P+++G YVLL+N+Y  ++ W +   VR  M E
Sbjct: 494 WGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNE 553

Query: 544 RGVEKTPGCSSI 555
           RG+ K PGCS I
Sbjct: 554 RGLRKIPGCSWI 565


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 316/565 (55%), Gaps = 34/565 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S  LDY  ++   +      S+   I GF +     +AV+L+KQM RN G  P+  T  
Sbjct: 144 KSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQM-RNVGVVPNEVTIA 202

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            L    +  G  +    + G V+K+ F+  + V   ++ ++  C  L  A  +FDE   +
Sbjct: 203 TLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEK 262

Query: 144 NLVSWNSLINGFVRSGFP-------------------------------REAIRLFRDMQ 172
           N+VSWN ++NG+ ++GF                                 EA+ ++R M 
Sbjct: 263 NIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMI 322

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
               EP++V M+ ++S C +   +  G+++   + + G      + + ++ +Y  CG++ 
Sbjct: 323 SAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRIN 382

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A   F     + V S   +I GY +   +D A ++F+++PE+ V  W+ +I GY Q ++
Sbjct: 383 EACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQ 442

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
              AL LFH+M A+GIKP+ VT V  LSA +  G L +G W H ++   +  ++  L  A
Sbjct: 443 PNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAA 502

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           ++DMYAKCG+I  AL+VF+E+ E+ S    + AII GLA+HG A  ++  FS++    + 
Sbjct: 503 IIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIK 562

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
            + ITF+G+L+ACCH GLV+ G+++F  M S   + P +KHY CMVDLLGR+G LEEAE+
Sbjct: 563 LNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEE 622

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           +IRSMPM ADVV+WG L  ACR HGNV +GERAA  L  L+P      VLL+NMY D+  
Sbjct: 623 MIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGK 682

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSI 555
           WE+A  VR+ M+   +++ PG S +
Sbjct: 683 WEDAFLVRRAMQSHRMQRLPGYSGV 707



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 219/443 (49%), Gaps = 48/443 (10%)

Query: 110 FDV----DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           FDV    D   +N +I  +V  G L  AC +FDE  V+  VS+ ++I GF ++    +A+
Sbjct: 124 FDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAV 183

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LF+ M+   V P+EVT+  +VSA +    +   R +H  + +      V ++  L+ MY
Sbjct: 184 ELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMY 243

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
             C  L  A  +FD M  K +VS   M+ GY+K GF+D AR +F+ +P K +V W  II 
Sbjct: 244 CVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIID 303

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GYV+ +R  EAL ++  M + G +P+ V  V  +S C +  A+ +G  +   + K  F+ 
Sbjct: 304 GYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDC 363

Query: 346 NVVLGTALVDMYAKCGNIA-------------------------------KALQVFHEMP 374
              + + ++ +YA CG I                                +A+++F+EMP
Sbjct: 364 YDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMP 423

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR- 433
           ER+  +++ +I G   + +   A+  F +M+  G+ P+E+T + +LSA    G + EGR 
Sbjct: 424 ERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRW 483

Query: 434 -KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFAC 491
              +   +SI  +S  L   + ++D+  + G +  A ++   +   A+ V  W A+    
Sbjct: 484 AHEYVHNNSI-TVSDNLS--AAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGL 540

Query: 492 RLHGNVSIG-------ERAAMKL 507
            +HG+ ++        ER  +KL
Sbjct: 541 AVHGHANLSLKIFSDLERRHIKL 563



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 183/406 (45%), Gaps = 67/406 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S++  +D    +   + N +  +W   I G++   ++ EA+ +Y+ M+ + G  P++   
Sbjct: 275 SKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMI-SAGWEPNDVMM 333

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             L   C        G ++   V+K+GFD   ++ + +IH++ +CG +  AC  F     
Sbjct: 334 VDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSK 393

Query: 143 RNLVSWNSLINGFVR--------------------------SGF-----PREAIRLFRDM 171
            N+ SWN+LI G+VR                          SG+     P  A+ LF  M
Sbjct: 394 ENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKM 453

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
               ++P+EVTM+ ++SA A    L  GR  H Y+  + +T++  L+ A++DMY KCG +
Sbjct: 454 VASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSI 513

Query: 232 ESAEEIFDSMVNK--TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +A E+F  +  K  TV     +I G A  G  +++ KIF DL  ++             
Sbjct: 514 NNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRH------------- 560

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVV 348
                             IK +A+T +  L+AC  +G ++ G      ++ E+  + ++ 
Sbjct: 561 ------------------IKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIK 602

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGK 393
               +VD+  + G + +A ++   MP + + + +  ++     HG 
Sbjct: 603 HYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGN 648



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 164/345 (47%), Gaps = 45/345 (13%)

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E+ ++  +  C+    L+ G++IH  +S+SGL     + N+L++MY KCG L  A+ IFD
Sbjct: 66  ELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFD 125

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                  VS   MI GY K G LD A ++FD++P K  V +  +I G+ Q +   +A+ L
Sbjct: 126 VCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVEL 185

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW----IHRFIEKENFNLNVVLGTALVD 355
           F +M+  G+ P+ VT    +SA S  G    GIW    +H  + K  F   V++ T L+ 
Sbjct: 186 FKQMRNVGVVPNEVTIATLVSAYSHFG----GIWACRMLHGLVIKMLFEEFVLVSTNLLR 241

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGG---------------------LALHGKA 394
           MY  C ++ +A  +F EMPE+N +++  ++ G                     L   G  
Sbjct: 242 MYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTI 301

Query: 395 LD----------AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           +D          A+  +  MI  G  P+++  + ++S C     + EG++    +S++ +
Sbjct: 302 IDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQL---LSAVVK 358

Query: 445 LSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +      +  S ++ L    G + EA    R +    +V  W AL
Sbjct: 359 MGFDCYDFIQSTIIHLYAACGRINEACLQFR-IGSKENVASWNAL 402


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 314/565 (55%), Gaps = 72/565 (12%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A+S    +DY       ++ PN F +N  I+GF+++ +  +A++LY QMLR     P ++
Sbjct: 23  ALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLR-ANVSPTSY 81

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+P L K C  +        + GHV + GFD  ++V  +++  + S G +  +  VFDE 
Sbjct: 82  TFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEM 141

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R++ +W ++++G VR G    A RLF DM                     + D NL  
Sbjct: 142 PERDVFAWTTMVSGLVRVGDMSSAGRLF-DM---------------------MPDRNLAT 179

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
              W              N L+D Y +  +++ AE +F+ M  + ++S TTM        
Sbjct: 180 ---W--------------NTLIDGYARLREVDVAELLFNQMPARDIISWTTM-------- 214

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                                  I  Y Q KR +EAL +F+EM   GI PD VT    +S
Sbjct: 215 -----------------------INCYSQNKRFREALGVFNEMAKHGISPDEVTMATVIS 251

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ LGALD G  IH +I +  FNL+V +G+AL+DMYAKCG++ ++L +F ++ E+N   
Sbjct: 252 ACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFC 311

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + ++I GLA+HG A +A++ F +M    + P+ +TF+ +LSAC H GL++EGRK FA M+
Sbjct: 312 WNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMT 371

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
               + P ++HY CMVDLL ++GLLEEA QLIR+M +  + V+WGAL   C+LH N+ I 
Sbjct: 372 RDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIA 431

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT-PGCSSIEVNG 559
           + AA KL+ L+P +SG Y LL NM  + N W EA K+R  M+E+GVEK  PG S IE+  
Sbjct: 432 QVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMES 491

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQL 584
            +++F   DKSH   ++IY  L +L
Sbjct: 492 QVHQFAASDKSHAASDEIYSLLAEL 516


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/444 (42%), Positives = 282/444 (63%), Gaps = 3/444 (0%)

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQL--ERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           N+ ++N+L+  F +       I  F +  +      PDE T   ++ ACA L  +  G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H ++++ G    + + N+L+D+Y K G    A+++FD MV + VVS  T+I GY   G 
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLS 320
           +D AR +FD + EK +V W+ +I GY + ++  +A+ LF +MQ  G + P+ VT V  LS
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLS 268

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ LGALD G WIHRFI +    + + LG AL DMYAKCG + +A  VFHEM ER+ ++
Sbjct: 269 ACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVIS 328

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           ++ II GLA++G A +A ++F+EMI  GL P++I+F+G+L+AC H GLVD+G +YF  M 
Sbjct: 329 WSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMP 388

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            ++ ++PK++HY C+VDLL R+G L++AE LI SMPM  +V+VWGAL   CR++ +   G
Sbjct: 389 QVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERG 448

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ER   ++LELD   SG  V LAN+Y      ++A   R  M +    KTPGCS IE+N  
Sbjct: 449 ERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNS 508

Query: 561 LYEFIVRDKSHPELEQIYDCLVQL 584
           +YEF + D SHP+  +IY  + +L
Sbjct: 509 VYEFFMGDSSHPQSLRIYSMIREL 532



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 198/415 (47%), Gaps = 68/415 (16%)

Query: 17  IAFCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYK-QMLRNG 73
           + F  +S S      + ++FN  +  PN F++N  ++ F +       +  +  Q++   
Sbjct: 62  VKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPN 121

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
              PD +T+  + K CA L     G ++   V K G + +++V N+++ ++   G   +A
Sbjct: 122 APNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIA 181

Query: 134 CNVFDESCVRNLVSWNSLINGF--------------------------VRSGFPR----- 162
             +FDE  VR++VSWN+LI+G+                          + SG+ R     
Sbjct: 182 QKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYA 241

Query: 163 EAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +AI LFR MQ E  + P++VT++ ++SACA L  L+LG+ IH +I  + + + + L NAL
Sbjct: 242 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNAL 301

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
            DMY KCG +  A+ +F  M  + V+S + +I+G A +G+                    
Sbjct: 302 ADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGY-------------------- 341

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEK 340
                      + EA   F EM   G++P+ ++ +  L+AC+  G +D G+ +     + 
Sbjct: 342 -----------ANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQV 390

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
                 +     +VD+ ++ G + +A  + + MP + N + + A++GG  ++  A
Sbjct: 391 YGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDA 445



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 348 VLGTALVDMYAKCGNIAKALQVF-HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           ++    + + +  GN+  ++ +F H +   N   Y A++   + H      ISYF+  + 
Sbjct: 59  IIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLV 118

Query: 407 V--GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
           +     PDE TF  +L AC     V EG+K    ++  +     L   + +VDL  + G 
Sbjct: 119 LPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTK-YGCESNLFVRNSLVDLYFKVGC 177

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
              A++L   M +  DVV W  L       G V   ++A M    +  ++   +  + + 
Sbjct: 178 NCIAQKLFDEM-VVRDVVSWNTLISGYCFSGMV---DKARMVFDGMMEKNLVSWSTMISG 233

Query: 525 YRDSNMWEEAGKVRKMMEERG---------VEKTPGCS---SIEVNGLLYEFIVRDK 569
           Y  +  + +A ++ + M+  G         V     C+   ++++   ++ FI R+K
Sbjct: 234 YARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNK 290


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 300/499 (60%), Gaps = 63/499 (12%)

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
           S G+L  A  +F+   +  L  +N +I  F ++G  R+A+ LFR ++ E + PD  T   
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY-------------------- 225
           +  A   L ++  G +++ ++ +SGL     + N+LMDMY                    
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 226 -----------VKCGKLESA----EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
                      VKC + E A     +IF+ M  KTV+  T+M+ GY   G LD AR++F+
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 257

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
             P + VV W A+I GYVQ  R  +A+ALF EMQ   + PD  T V  L+          
Sbjct: 258 RSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT---------- 307

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
                          + V+GTAL++MYAKCG I K+L++F+ + E+++ ++T+II GLA+
Sbjct: 308 ---------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAM 352

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           +GK   A+  F+EM+  G+ PD+ITF+G+LSAC HGGLV+EGRK+F  M++++++ PKL+
Sbjct: 353 NGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLE 412

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV---WGALFFACRLHGNVSIGERAAMKL 507
           HY C++DLLGR+G L+EAE+LI   P   + V+   +GAL  ACR HGNV +GER A +L
Sbjct: 413 HYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRL 472

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           + ++  DS ++ LLAN+Y  ++ WE+  KVR+ M++ GV+K PGCSS+EVNG+++EF+V 
Sbjct: 473 VGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVG 532

Query: 568 DKSHPELEQIYDCLVQLTR 586
           D SHPE+ +IY  L  + +
Sbjct: 533 DASHPEMREIYSMLDSIAK 551



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 196/404 (48%), Gaps = 28/404 (6%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG    G   ++ +  C      NL Y  +I   +  P  F +N+ I+ F + G  R+AV
Sbjct: 58  TGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAV 117

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++Q LR  G  PDNFTYP +FK    LG    G +++G V+K G + D YV N+++ +
Sbjct: 118 LLFRQ-LREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDM 176

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR----DMQLERVEPD 179
           +   G +     VF+E   R++VSWN LI+G+V+     +A+ +FR    DM ++ V   
Sbjct: 177 YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTV--- 233

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            +    MVS       L+  RE+     E      V L  A+++ YV+  + + A  +F 
Sbjct: 234 -ICWTSMVSGYVNCGQLDEARELF----ERSPVRDVVLWTAMINGYVQFNRFDDAVALFR 288

Query: 240 SMVNKTV--------------VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            M  K V              V  T +I  YAK GF++ + +IF+ L EK    W +II 
Sbjct: 289 EMQIKRVSPDRFTLVALLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIIC 348

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFN 344
           G     ++ +AL LF EM  TG+KPD +T +  LSACS  G +++G    R +       
Sbjct: 349 GLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIE 408

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             +     L+D+  + G + +A ++  + P  N+     + G L
Sbjct: 409 PKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGAL 452


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/461 (41%), Positives = 284/461 (61%), Gaps = 12/461 (2%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           DLG A ++FD    R+L+ WN++I  +V + F  + I LF ++  E + PD  T+  ++ 
Sbjct: 65  DLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIK 123

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV- 247
            CA+L  +  G++IH    + G    V +  +L++MY KCG+++ A ++FD M++K VV 
Sbjct: 124 GCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVL 183

Query: 248 ----------SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
                     S   MI GY K G  D A ++F  +P   +V WN +I GY    +  +A+
Sbjct: 184 WNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAV 243

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F  M   G +P   T V  LSA S L  L  G WIH ++EK  F L+ +LGT+L++MY
Sbjct: 244 KMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMY 303

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKCG I  AL VF  + ++    +TAII GL +HG A  A++ F EM   GL P+ I F+
Sbjct: 304 AKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFI 363

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+L+AC H GLVD+GR+YF  M + +++ P L+HY C+VD+L R+G LEEA+  I +MP+
Sbjct: 364 GVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPI 423

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
           + + V+W +L    R HG + IGE AA +++E+ P+  G Y+LL+NMY  S MWE+   V
Sbjct: 424 SPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHV 483

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           R+MM +RG  K PGCSS+E  G L+EFIV D SHP+ ++IY
Sbjct: 484 REMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIY 524



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 213/463 (46%), Gaps = 81/463 (17%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           T + +H F  SRL+A  +  +  +L Y   I   +Q  +   WN  I+ ++E     + +
Sbjct: 42  TAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGI 101

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+ +++      PDNFT P + K CA LG+   G +I G  LK+GF  D++V  +++++
Sbjct: 102 VLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNM 159

Query: 124 FVSCGDLGLACNVFDESCVR-----------NLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +  CG++  A  VFD    +           NLVSWN++ING+++SG    A+ LF  M 
Sbjct: 160 YSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMP 219

Query: 173 LERV-------------------------------EPDEVTMIGMVSACAQLEDLNLGRE 201
           +  +                                P   T++ ++SA + L  L  GR 
Sbjct: 220 IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRW 279

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           IH Y+ ++G  L   L  +L++MY KCG +ESA  +F ++  K V   T +IVG    G 
Sbjct: 280 IHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGM 339

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
                                          +  ALALF EM  TG+KP+A+  +  L+A
Sbjct: 340 -------------------------------ANHALALFLEMCKTGLKPNAIIFIGVLNA 368

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNS 378
           C+  G +DDG      +  E + +   L     LVD+  + G++ +A      MP   N 
Sbjct: 369 CNHAGLVDDGRQYFDMMMNE-YKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 427

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           + + +++GG   HGK +D   Y ++ + + + P+ I    +LS
Sbjct: 428 VIWMSLLGGSRNHGK-IDIGEYAAQRV-IEVAPETIGCYILLS 468


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/568 (34%), Positives = 324/568 (57%), Gaps = 40/568 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T ++ +    SRLI FCA SE  +++Y   +         + WN  I+G+   G   
Sbjct: 28  MIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGDKF 87

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ +Y++M R G   PD+FT+P + KVC+++ L   G  +   ++K GF++D+Y  + +
Sbjct: 88  GALFMYEEMQRKG-FYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCL 146

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           ++++VSCGDL     VF+     N+V+W SLI GFV +  P+EA+RLF+DM+ E VEP+E
Sbjct: 147 LNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNE 206

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGL-------TLTVPLANALMDMYVKCGKLES 233
           +TM   ++A A+  D++ G+ + + + + GL          V LA A+MDMY KCGKL +
Sbjct: 207 ITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVT 266

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
                                          AR +FD +P++ +V WN++I  + Q  R 
Sbjct: 267 -------------------------------ARNLFDKMPQRNLVVWNSMISAFSQYGRG 295

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            EAL LF +M+  G  P+  T +  + AC+ L     G  +H  + K NF+  V +GTAL
Sbjct: 296 AEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTAL 355

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPD 412
           +DMYAK G+   AL++F ++ +++ + +T +I GLA+ GK  +A++ F  M     + PD
Sbjct: 356 MDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPD 415

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           +IT++ +L AC H GLV+EG+K+F  M  ++ + P ++HY CM+DLL R+G  EEAE+L+
Sbjct: 416 QITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELL 475

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
             MP   +  +  ++   C ++GNV +  R    ++EL    SG+YVLL+N++  +  WE
Sbjct: 476 VKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWE 535

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           E    R +++ + + KT G S +E+N L
Sbjct: 536 EMKLARDILKHKKIGKTLGNSFVEMNLL 563


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/630 (34%), Positives = 331/630 (52%), Gaps = 70/630 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDY--CTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +GL++  FA SRL+ F + S    L +    ++L  V+ PN+FS N  ++  L  G    
Sbjct: 30  SGLLADAFAASRLLLFTSASRLLPLPFHHSLRLLRLVRYPNAFSCNTLLKSALIGGMPHL 89

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA-- 119
            + LY  +       PD++T+P+L   CAS      G ++  H +  GF  ++Y+ NA  
Sbjct: 90  CLPLYASL----PAPPDSYTHPILAAACASRKDVIEGRQVHAHAVSHGFGDNLYLRNALI 145

Query: 120 -----------------------------VIHVFVSCGDLGLAC---------------- 134
                                        ++  +V  GD+  A                 
Sbjct: 146 FMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSS 205

Query: 135 ---------------NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
                           VFD +  R++ +W ++I+ F R+    EA+ +F  M+ ER   D
Sbjct: 206 MVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHVD 265

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E  M+ +VSACAQ E +  G+  H  +  +GL   V + NAL+ MY  C  + +A  +FD
Sbjct: 266 EPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFD 325

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           S       S  +MI GY K G +  A  +F  +P K  V W+ +I G VQ  +S +AL +
Sbjct: 326 SGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTV 385

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F  MQA GI+PD VT V  +SAC+ L AL+ G  +H +I++  + +++VLGT+L++MY K
Sbjct: 386 FDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMK 445

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEITFLG 418
           CG +  AL+ F+ M E+ +  + A+I GLA++G  + ++  FSEM       P+EITF G
Sbjct: 446 CGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTG 505

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC H GLVDEGR +F  M   +++ P ++HY CMVDLLGR+G ++EAE +I+SMPM+
Sbjct: 506 VLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMPMS 565

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            DV  WGAL  AC  HG   +GER   KL+  DP   G   +L+N+Y    MW+    +R
Sbjct: 566 PDVPAWGALLGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLSNIYAKEGMWQSVDDLR 625

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
             M++R V+K  G S ++ +   YE +  D
Sbjct: 626 GSMKQRHVQKVSGHSVVK-SSHSYEILAGD 654


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/571 (33%), Positives = 326/571 (57%), Gaps = 7/571 (1%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +  S+L+A    S++ +L +   +   + + N+FS+N  +  +    +  +A+DL+  + 
Sbjct: 60  YLASKLVAL--YSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLA 117

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLR--FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
            +     +N +   L K  +S  L    LG E+ G VL+ GFD D++V NA+I  +  C 
Sbjct: 118 SS--NLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCY 175

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMV 187
           DL L+  VFD    R++VSWNS+I+G+ + G   +   L+R+M       P+ VT++ ++
Sbjct: 176 DLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVL 235

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC Q +DL  G E+H +I ++ + + + + NAL+ +Y KCG L+ A E+FD M  K  V
Sbjct: 236 QACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEV 295

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           +   +I G    G++D + ++F  +  + +  WNA+I G VQ  R +  L L  EMQA G
Sbjct: 296 TYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALG 355

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P+AVT    LS  +   +L  G  IH +  K  ++ N+ + TA++DMYAK G +  A 
Sbjct: 356 FRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQ 415

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF +  +R+ + +TAII   A+HG A  A+  F EM+  G+ PD +TF  +L+AC H G
Sbjct: 416 RVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCG 475

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +VD+  + F  M   + + P ++HY+C+V  LG++  L EA++ +  MP+     VWGAL
Sbjct: 476 MVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGAL 535

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
                +  +V +G+     L E++P+++G YV++AN+Y  +  W+EA +VR+ M + G++
Sbjct: 536 LHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQ 595

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           K PG S IE +  L  FI  D     +E+I+
Sbjct: 596 KIPGSSWIETSEGLRSFIATDTCTENVEEIH 626


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/582 (35%), Positives = 327/582 (56%), Gaps = 36/582 (6%)

Query: 39  QNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           +NP  N  SW  AI GF+  G   EA+ L+ ++L +G  RP++ T+  + + C  LG   
Sbjct: 143 RNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDVTFTSVVRACGELGDFG 201

Query: 97  LGYEIFGHVLKLGFDVDMYVHN-------------------------------AVIHVFV 125
           LG  I G V+K GF+  + V N                               A++  +V
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
             GDL  A  +FDE   RN +SW+++I  + +SG+  EA++LF  M  E  +P+      
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
            +SA A L  L+ G  IH ++++ G+   V + ++L+D+Y KCGK +    +FD ++ K 
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VV   +M+ GY+  G L+   ++F+ +PEK    W  IJ GY++ ++ ++ L +F+ +  
Sbjct: 382 VVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLV 441

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           +G  P+  T    L AC+ + +LD G+ +H  I K     ++ +GTAL DMYAKCG+I  
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACC 424
           + QVF  MPE+N +++T +I GLA  G A++++  F EM     + P+E+  L +L AC 
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLVD+G  YF  M  ++ + PK KHY+C+VDLL RSG L EAE+ IR++P   +   W
Sbjct: 562 HCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAW 621

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL   C+ + +  I ER A KL +L   +S  YVLL+N+Y  +  W +   +RK+M E+
Sbjct: 622 AALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREK 681

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           G++K+ GCS +EV   ++ F   D SH + ++IY  L QL R
Sbjct: 682 GLKKSGGCSWVEVRNQVHSFYSEDGSHSQSDEIYGTL-QLLR 722



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 208/433 (48%), Gaps = 67/433 (15%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING------------------ 154
           D+ V N +I  +V  G+L  A  +FDE   RN VSW++LI+G                  
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 155 -------------FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
                        FVR+G   EA++LF  +    V P++VT   +V AC +L D  LG  
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           I   + ++G    + ++N+L+ + ++ G+++ A  +FD M  + VVS T ++  Y + G 
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           L  AR+IFD++PE+  + W+A+I  Y Q+  ++EAL LF +M   G KP+       LSA
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
            + L AL  GI IH  + K   + +V +G++L+D+Y KCG       VF  + E+N + +
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 382 TAIIGGLALHGKAL-------------------------------DAISYFSEMIGVGLM 410
            +++GG +++G+                                   +  F+ ++  G  
Sbjct: 386 NSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEA 468
           P++ TF  +L AC     +D+G     +   I +L  +   +  + + D+  + G +  +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGK---IIKLGIQYDIFVGTALTDMYAKCGDIGSS 502

Query: 469 EQLIRSMPMAADV 481
           +Q+   MP   ++
Sbjct: 503 KQVFERMPEKNEI 515



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 156/359 (43%), Gaps = 64/359 (17%)

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G  +H ++ ++G +    +A  L+ +Y+ C K    ++I        +V    MI  Y +
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 259 FGFLDIARKIFDDLPE--------------KY-----------------VVPWNAIIGGY 287
           +G L  AR +FD++PE              KY                 VV W A I G+
Sbjct: 100 WGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGF 159

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF---- 343
           V+   + EAL LF  +  +G++P+ VT    + AC +LG    G+ I   + K  F    
Sbjct: 160 VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYL 219

Query: 344 ---------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
                                        +VV  TA++D Y + G++ +A ++F EMPER
Sbjct: 220 SVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER 279

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N ++++A+I   +  G A +A+  FS+M+  G  P+   F   LSA      +  G    
Sbjct: 280 NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIH 339

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             ++ I  +   +   S ++DL  + G  ++  +L+  + +  +VV W ++     ++G
Sbjct: 340 GHVTKI-GIDKDVFIGSSLIDLYCKCGKPDDG-RLVFDLILEKNVVCWNSMVGGYSING 396



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           +   N  SW   J G+LE  +  + ++++  +L +G T P+  T+  +   CAS+     
Sbjct: 408 IPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQT-PNKSTFSSVLCACASIASLDK 466

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  + G ++KLG   D++V  A+  ++  CGD+G +  VF+    +N +SW  +I G   
Sbjct: 467 GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAE 526

Query: 158 SGFPREAIRLFRDMQ-LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE----SGLT 212
           SGF  E++ LF +M+    V P+E+ ++ ++ AC+    ++ G    WY +      G+ 
Sbjct: 527 SGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGL---WYFNSMEKVYGIK 583

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSM 241
                   ++D+  + G+L  AEE   ++
Sbjct: 584 PKGKHYTCVVDLLSRSGRLYEAEEFIRTI 612


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 310/557 (55%), Gaps = 36/557 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N+ +W + I   ++ G   EA+DL+  M+ +G   PD FT   +   CA++
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSG-YEPDRFTLSGVISACANM 284

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDESCVRNLVSWN 149
            L  LG ++    ++ G  +D  V   +I+++  C   G +  A  +FD+    N+ SW 
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 150 SLINGFV-RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           ++I G+V + G+  EA+ LFR M L  V P+  T    + ACA L  L +G ++  +  +
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK 404

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G +    +AN+L+ MY + G++                               D ARK 
Sbjct: 405 LGFSSVNCVANSLISMYARSGRI-------------------------------DDARKA 433

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD L EK ++ +N +I  Y +   S+EAL LF+E++  G+   A T    LS  + +G +
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G  IH  + K    LN  +  AL+ MY++CGNI  A QVF +M +RN +++T+II G 
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A HG A  A+  F +M+  G+ P+E+T++ +LSAC H GLV+EG K+F  M +   + P+
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY+C+VD+LGRSG L EA Q I SMP  AD +VW     ACR+HGN+ +G+ AA  ++
Sbjct: 614 MEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           E +P D   Y+LL+N+Y   + W+E   +RK M+E+ + K  GCS +EV   +++F V D
Sbjct: 674 EQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGD 733

Query: 569 KSHPELEQIYDCLVQLT 585
            SHP+  +IYD L  L+
Sbjct: 734 TSHPKAAEIYDELQNLS 750



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 203/399 (50%), Gaps = 49/399 (12%)

Query: 7   ISHGFAPSRLIAFCAI------SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM- 59
           I HG    R +  C I      S   ++    KI   + + N FSW   I G+++ G   
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            EA+DL++ M+      P++FT+    K CA+L    +G ++F H +KLGF     V N+
Sbjct: 358 EEALDLFRGMILTH-VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I ++   G +  A   FD    +NL+S+N++I+ + ++    EA+ LF +++ + +   
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++S  A +  +  G +IH  + +SGL L   + NAL+ MY +CG +ESA ++F+
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M ++ V+S T++I G+AK GF                               + +AL L
Sbjct: 537 DMEDRNVISWTSIITGFAKHGF-------------------------------ATQALEL 565

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG-----TALV 354
           FH+M   G++P+ VT +  LSACS +G +++G W H    K  +  + V+        +V
Sbjct: 566 FHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG-WKHF---KSMYTEHGVIPRMEHYACIV 621

Query: 355 DMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHG 392
           D+  + G++++A+Q  + MP + ++L +   +G   +HG
Sbjct: 622 DILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHG 660



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 218/472 (46%), Gaps = 42/472 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW+  +  F        A+  +  M+ NG   P+ + +    + C++     +G  IFG 
Sbjct: 135 SWSAMVSCFANNNMGFRALLTFVDMIENG-YYPNEYCFAAATRACSTAEFVSVGDSIFGF 193

Query: 105 VLKLGF-DVDMYVHNAVIHVFVSC-GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           V+K G+   D+ V   +I +FV   GDL  A  VF++   RN V+W  +I   ++ G+  
Sbjct: 194 VIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EAI LF DM     EPD  T+ G++SACA +E L LG+++H      GLTL   +   L+
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 223 DMYVKC---GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +MY KC   G + +A +IFD +++  V S T MI GY +                     
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQ--------------------- 352

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                GGY      +EAL LF  M  T + P+  T    L AC+ L AL  G  +     
Sbjct: 353 ----KGGY-----DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV 403

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K  F+    +  +L+ MYA+ G I  A + F  + E+N ++Y  +I   A +  + +A+ 
Sbjct: 404 KLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALE 463

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MVD 457
            F+E+   G+     TF  +LS     G + +G +  A+   + +   KL    C  ++ 
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHAR---VIKSGLKLNQSVCNALIS 520

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           +  R G +E A Q+   M    +V+ W ++      HG  +       K+LE
Sbjct: 521 MYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLE 571



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 129/553 (23%), Positives = 232/553 (41%), Gaps = 85/553 (15%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           NPN  +  +     +  G++ +A+   + M+  G + PD  TY L  K C       +G 
Sbjct: 30  NPNPLTGRLIQE--INNGRLHKAISTLEHMVHQG-SHPDLQTYSLFLKKCIRTRSFDIGT 86

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD-ESCVRNLVSWNSLINGFVRS 158
            +   + +    +D    N++I ++  CG    A ++F      R+L+SW+++++ F  +
Sbjct: 87  LVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANN 146

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPL 217
                A+  F DM      P+E        AC+  E +++G  I  ++ ++G L   V +
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCV 206

Query: 218 ANALMDMYVKC-GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
              L+DM+VK  G L SA ++F+ M  +  V+ T MI    +FG+               
Sbjct: 207 GCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY--------------- 251

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                           + EA+ LF +M  +G +PD  T    +SAC+ +  L  G  +H 
Sbjct: 252 ----------------AGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 337 FIEKENFNLNVVLGTALVDMYAKC---GNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
              +    L+  +G  L++MYAKC   G++  A ++F ++ + N  ++TA+I G    G 
Sbjct: 296 QAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGG 355

Query: 394 -ALDAISYFSEMIGVGLMPDEITFLGILSACCH--------------------------- 425
              +A+  F  MI   ++P+  TF   L AC +                           
Sbjct: 356 YDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415

Query: 426 --------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL---IRS 474
                    G +D+ RK F  +         L  Y+ ++D   ++   EEA +L   I  
Sbjct: 416 SLISMYARSGRIDDARKAFDIL-----FEKNLISYNTVIDAYAKNLNSEEALELFNEIED 470

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEE 533
             M A    + +L       G +  GE+   ++++   + +  +   L +MY      E 
Sbjct: 471 QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIES 530

Query: 534 AGKVRKMMEERGV 546
           A +V + ME+R V
Sbjct: 531 AFQVFEDMEDRNV 543



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 5/245 (2%)

Query: 4   TGLISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           T  +  GF+    +A   IS    S  +D   K    +   N  S+N  I  + +     
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA++L+ + + + G     FT+  L    AS+G    G +I   V+K G  ++  V NA+
Sbjct: 460 EALELFNE-IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  CG++  A  VF++   RN++SW S+I GF + GF  +A+ LF  M  E V P+E
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNE 578

Query: 181 VTMIGMVSACAQLEDLNLG-REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           VT I ++SAC+ +  +N G +      +E G+   +     ++D+  + G L  A +  +
Sbjct: 579 VTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFIN 638

Query: 240 SMVNK 244
           SM  K
Sbjct: 639 SMPYK 643


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 300/509 (58%), Gaps = 32/509 (6%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL--KLGFDVDMYVH 117
           R A+  +  + R G   P     P L +  A    RF G     H L  ++G +VD +V 
Sbjct: 50  RLALAAFACLRRVGLPAPGRRALPSLLRAIALA--RFPGTAGAAHGLAFRVGAEVDGFVG 107

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
            A++  + +CG +  A  VFD    R+LV+W  +++ + ++    EA+ LF  M+  RV 
Sbjct: 108 TALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD+V +  ++S CA   +L  G+ IH Y+  S   +   ++ ALM+MY  C  +E AE++
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKL 227

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           ++ +  K +V  TTM+ GYAK G ++IA  IF+ +PEK VV W+A+I GY ++ +  EAL
Sbjct: 228 YNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEAL 287

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LFH+MQ +G++PD +T +  L                             +G AL+DM+
Sbjct: 288 NLFHDMQRSGVQPDEITMLSILP----------------------------IGNALIDMF 319

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +KCG++  AL VF+ MP++N +T+T+II   A+HG    A++ F  M   G+ P+ +TFL
Sbjct: 320 SKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFL 379

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+L ACCH GLV+EGR  F  M   +R+ P  +HY CMVDLLGR+ LL +A  LI+SM +
Sbjct: 380 GLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHL 439

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             +VV+WG+L  ACR+HG++ +G  AA K+LELDP   G  VLL+N+Y +   W +  +V
Sbjct: 440 RPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEV 499

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           R +M+ +G  K  GCS +E+NG +++F V
Sbjct: 500 RGVMKVQGTWKKKGCSWMELNGSVHQFAV 528



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 29/178 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           +++  ++    I   +   +  SW+  I G+ E+ K  EA++L+  M R+ G +PD  T 
Sbjct: 247 AKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQRS-GVQPDEIT- 304

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                                 +L +G        NA+I +F  CG L LA +VF+    
Sbjct: 305 -------------------MLSILPIG--------NALIDMFSKCGSLTLALDVFNAMPQ 337

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
           +N+V+W S+I      G  R A+ LF +M+ E ++P+ VT +G++ AC     +  GR
Sbjct: 338 KNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGR 395


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 288/475 (60%), Gaps = 34/475 (7%)

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQL--ERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           N+ ++N+L+  F +       I  F +  +      PDE T   ++ ACA L  +  G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 202 IHWYISESGLTLTVPLANALMDMYVK-------------------------------CGK 230
           +H ++++ G    + + N+L+D+Y K                                G 
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           ++ A  +FD M+ K +VS +TMI GYA+ G L+ AR++F+++P + VV WNA+I GY Q 
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQN 268

Query: 291 KRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           ++  +A+ LF +MQ  G + P+ VT V  LSAC+ LGALD G WIHRFI +    + + L
Sbjct: 269 EKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFL 328

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           G AL DMYAKCG + +A  VFHEM ER+ ++++ II GLA++G A +A ++F+EMI  GL
Sbjct: 329 GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL 388

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            P++I+F+G+L+AC H GLVD+G +YF  M  ++ ++PK++HY C+VDLL R+G L++AE
Sbjct: 389 EPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 448

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
            LI SMPM  +V+VWGAL   CR++ +   GER   ++LELD   SG  V LAN+Y    
Sbjct: 449 SLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             ++A   R  M +    KTPGCS IE+N  +YEF + D SHP+  +IY  + +L
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIREL 563



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 197/446 (44%), Gaps = 99/446 (22%)

Query: 17  IAFCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYK-QMLRNG 73
           + F  +S S      + ++FN  +  PN F++N  ++ F +       +  +  Q++   
Sbjct: 62  VKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPN 121

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
              PD +T+  + K CA L     G ++   V K G + +++V N+++ ++   G   +A
Sbjct: 122 APNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIA 181

Query: 134 CNVFDESCVRNLVSWNSLINGF--------------------------VRSGFPR----- 162
             +FDE  VR++VSWN+LI+G+                          + SG+ R     
Sbjct: 182 QKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLE 241

Query: 163 EAIRLFRDMQLERV--------------------------------EPDEVTMIGMVSAC 190
           EA +LF +M +  V                                 P++VT++ ++SAC
Sbjct: 242 EARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSAC 301

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A L  L+LG+ IH +I  + + + + L NAL DMY KCG +  A+ +F  M  + V+S +
Sbjct: 302 AHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWS 361

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
            +I+G A +G+                               + EA   F EM   G++P
Sbjct: 362 IIIMGLAMYGY-------------------------------ANEAFNFFAEMIEDGLEP 390

Query: 311 DAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           + ++ +  L+AC+  G +D G+ +     +       +     +VD+ ++ G + +A  +
Sbjct: 391 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 450

Query: 370 FHEMP-ERNSLTYTAIIGGLALHGKA 394
            + MP + N + + A++GG  ++  A
Sbjct: 451 INSMPMQPNVIVWGALLGGCRIYKDA 476


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/538 (36%), Positives = 307/538 (57%), Gaps = 23/538 (4%)

Query: 52  GFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD 111
             L+    +EA+ +Y +M +      ++FT+  L K   +      G  I G +LKLGF 
Sbjct: 48  NLLDYATHKEALRVYSRM-KALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFG 106

Query: 112 VDMYVHNAVIHVFVSCGD-LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
             ++V N+++  + +C + LG A  VF+E   R+++SWNS+I+ ++  G  + AI L   
Sbjct: 107 SSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDK 166

Query: 171 MQLERVEPDEVTMIGMVSAC------AQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           M    +      + G+  A       +  E + L  E+ W              N+++  
Sbjct: 167 MPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSW--------------NSMISG 212

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           YV+ G + +A+ IF  M  KTVVS T MI GYA  G L  A  IF+ +P K VV WNA+I
Sbjct: 213 YVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMI 272

Query: 285 GGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
            GYV      +AL +FH M   G  +PD  T +  LSAC+ LG+L+ G WI+ +I+K   
Sbjct: 273 SGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKL 332

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           +L++ LG AL+DM+AKCG++  A +VFH M +R  +T+T ++ GLA++GK  +AI+ F +
Sbjct: 333 HLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDK 392

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M   G  PD++ F+ +LSAC HGGLV+EG++ F QM   F + P+++HY CMVDLLGR+G
Sbjct: 393 MCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAG 452

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            LEEA +    M +  + V+W  L F C++HGN  + +    K+++ +P +     L++N
Sbjct: 453 KLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSN 512

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +      WE+    R  M ++ +EK PGCSSI+V   ++EF+ +D  H + ++IY  L
Sbjct: 513 LSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRAL 570



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 209/444 (47%), Gaps = 63/444 (14%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G  S  F  + L+ F A + S+NL    ++   +   +  SWN  I  ++  G+++ A+ 
Sbjct: 104 GFGSSVFVQNSLLGFYA-NCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIG 162

Query: 65  LYKQML-RN---------GGTRPDNFTYPLLFKVCASLGLR--------FLGYEIFGHVL 106
           L  +M  RN         G ++  N    L   V   + LR          GY   G V 
Sbjct: 163 LLDKMPERNIVTWNSVVCGLSKAGNME--LAHSVFEQMPLRNEVSWNSMISGYVRIGDVR 220

Query: 107 KLGF------DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
                     +  +    A+I  + + GDL  A N+F+   V+N+VSWN++I+G+V +  
Sbjct: 221 AAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHE 280

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             +A+ +F  M +     PD+ T+I ++SACA L  L  G+ I+ YI ++ L L++PL N
Sbjct: 281 FDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGN 340

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+DM+ KCG +E+A+E+F  M  + +++ TTM+ G A  G                   
Sbjct: 341 ALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNG------------------- 381

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFI 338
                       + +EA+ LF +M   G KPD V  +  LSAC+  G +++G  +  + +
Sbjct: 382 ------------KCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMV 429

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDA 397
           ++      +     +VD+  + G + +A++    M  + N++ +  ++    +HG   D 
Sbjct: 430 QEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNG-DL 488

Query: 398 ISYFSEMIGVGLMPDEITFLGILS 421
           +   +E I +   P   ++L ++S
Sbjct: 489 LKSVTEKI-MDQEPSNPSYLTLVS 511


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/535 (37%), Positives = 319/535 (59%), Gaps = 6/535 (1%)

Query: 39  QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
           +  NSF WN  I+ F      RE   ++  ML +G    D F++ L+ K C+ LGL   G
Sbjct: 77  KQDNSFIWNAIIKSFSHKEDPREVFVIFNLMLESG-VCVDKFSFSLVLKACSRLGLIKEG 135

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
            +I G + K+    D+++ N ++ +++ CG LG+   +FD    ++ VS+NS+I+G+V+ 
Sbjct: 136 MQIHGLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQLFDRMMKKDSVSFNSMIDGYVKH 195

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G  + A  LF  M +E  +   ++   M+S  A+ E+     ++ W + E      +   
Sbjct: 196 GMVKSAWELFDVMPME--QKILISWNSMISEYARSEE---RLKVAWELFEEMPKKDLISW 250

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N++++  VKCGK+E+   +F+ M  + VVS   M+ G+AK G +DIAR +F ++PE  V+
Sbjct: 251 NSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVI 310

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
             NA++  YVQ     E+L  FH+M +  +  D  T +  LSA +QLG  D+G+ +H +I
Sbjct: 311 SCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYI 370

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
           E   F+L+  LG AL+D YAKCG+I  AL VF ++  ++   + AI+ GLA+HG    A 
Sbjct: 371 EDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEVAF 430

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             F EM  + + P++ITF+G+L+AC H GLV EG   F  M  + ++ PKL+HY CMVD+
Sbjct: 431 ELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMVDI 490

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LG++G +EE ++ +  M +  + VVW  L  ACR H N +IGE  A  L+ +D  +   Y
Sbjct: 491 LGQAGHVEETKKFVEKMSIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNLSSY 550

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           VLL+N+Y    +W +  ++R MM++R ++K PGCS IE+ G +++F VRDKSHP+
Sbjct: 551 VLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPGCSQIELEGNVHKFFVRDKSHPQ 605


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 310/573 (54%), Gaps = 73/573 (12%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL S       LI   AI  S  +DY  ++   +  P+ F WN  IRG  +T K  
Sbjct: 36  LIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPA 95

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            AV LY QM  N G RPD FT+  + K C  L    LG+ I G VLK GF  + +V N +
Sbjct: 96  TAVSLYTQM-ENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTL 154

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I+   +CGDL  A  +FD S  R +V W++L  G+ R G    A +LF          DE
Sbjct: 155 IYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLF----------DE 204

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           + M  +VS               W              N ++  Y K G++E A ++FD 
Sbjct: 205 MPMKDLVS---------------W--------------NVMITAYAKHGEMEKARKLFDE 235

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           +  K VV+                               WNA+I GYV ++ +KEAL +F
Sbjct: 236 VPKKDVVT-------------------------------WNAMIAGYVLSRLNKEALEMF 264

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMYAK 359
             M+  G +PD VT +  LSA + LG L+ G  IHR I +    +L+V+L  AL+DMYAK
Sbjct: 265 DAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAK 324

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG+I  AL+VF  M ++++ ++ +IIGGLALHG A ++I+ F EM+ + + P+EITF+ +
Sbjct: 325 CGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAV 384

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H G V EGR YF  M ++F++ P +KHY CMVD+LGR+GLL EA   I +M +  
Sbjct: 385 LVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEP 444

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           + ++W  L  ACR+HG+V +G RA  +LL++   +SG YVLL+N+Y     W+   KVRK
Sbjct: 445 NAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRK 504

Query: 540 MMEERGVEKTPGCSSIEV-NGLLYEFIVRDKSH 571
           +M++ GV+K  G S I+  N  L  F+   K +
Sbjct: 505 LMDDGGVKKKVGHSLIDSDNSFLMHFLFDSKPN 537


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 306/548 (55%), Gaps = 33/548 (6%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           +  P+  SWN  I G +  G     ++++ QML   G   D  T   +   CA++G   L
Sbjct: 256 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI-LGVEVDLTTLVSVLVACANIGNLSL 314

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  + G  +K  F  ++   N ++ ++  CG+L  A  VF +     +VSW S+I  +VR
Sbjct: 315 GRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVR 374

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
            G   +AI LF +MQ + V PD  T+  +V ACA    L+ GR++H Y+ ++G+   +P+
Sbjct: 375 EGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPV 434

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            NAL++MY KCG +E A                               R +F  +P K +
Sbjct: 435 TNALINMYAKCGSVEEA-------------------------------RLVFSKIPVKDI 463

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WN +IGGY Q     EAL LF +MQ    KPD +T    L AC+ L ALD G  IH  
Sbjct: 464 VSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGH 522

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I +  +  ++ +  ALVDMYAKCG +  A  +F  +P+++ +++T +I G  +HG   +A
Sbjct: 523 ILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 582

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           IS F+EM   G+ PDE +F  IL+AC H GL++EG K+F  M +   + PKL+HY+C+VD
Sbjct: 583 ISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 642

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LL R G L +A + I SMP+  D  +WG L   CR+H +V + E+ A  + EL+P ++  
Sbjct: 643 LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRY 702

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YV+LAN+Y ++  WEE  K+RK M++RG ++ PGCS IEV G    F+  +  HP+ ++I
Sbjct: 703 YVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKI 762

Query: 578 YDCLVQLT 585
              L +LT
Sbjct: 763 DVLLSKLT 770



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 189/371 (50%), Gaps = 35/371 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  NL+  T++   + +    SW   I  ++  G   +A+ L+ +M ++ G RPD +T 
Sbjct: 342 SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTV 400

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA       G ++  +V+K G   ++ V NA+I+++  CG +  A  VF +  V
Sbjct: 401 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 460

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++VSWN++I G+ ++  P EA+ LF DMQ ++ +PD++TM  ++ ACA L  L+ GREI
Sbjct: 461 KDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREI 519

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +I   G    + +A AL+DMY KCG L  A+ +FD +  K ++S T MI GY   GF 
Sbjct: 520 HGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF- 578

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                           EA++ F+EM+  GI+PD  +    L+AC
Sbjct: 579 ------------------------------GNEAISTFNEMRIAGIEPDESSFSAILNAC 608

Query: 323 SQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT- 380
           S  G L++G      +  E      +     +VD+ A+ GN++KA +    MP +   T 
Sbjct: 609 SHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTI 668

Query: 381 YTAIIGGLALH 391
           +  ++ G  +H
Sbjct: 669 WGVLLSGCRIH 679



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 204/451 (45%), Gaps = 36/451 (7%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           N  +  + + N  I  F E G +R A++L   + ++        +Y  + ++CA      
Sbjct: 55  NTTHSVTQNQNAKINKFCEMGDLRNAIEL---LTKSKSYELGLNSYCSVLQLCAEKKSLE 111

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G  +   ++  G  VD  +   ++ ++V+CGDL     +FD+     +  WN L++ + 
Sbjct: 112 DGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYA 171

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           + G  RE++ LF+ MQ   V  +  T   ++   A L  +   + +H Y+ + G      
Sbjct: 172 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 231

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N+L+  Y K G +ESA  +FD +    VVS                            
Sbjct: 232 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVS---------------------------- 263

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              WN++I G V    S   L +F +M   G++ D  T V  L AC+ +G L  G  +H 
Sbjct: 264 ---WNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHG 320

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           F  K  F+  VV    L+DMY+KCGN+  A +VF +M +   +++T+II      G   D
Sbjct: 321 FGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSD 380

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           AI  F EM   G+ PD  T   I+ AC     +D+GR   + +     +   L   + ++
Sbjct: 381 AIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALI 439

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           ++  + G +EEA  +   +P+  D+V W  +
Sbjct: 440 NMYAKCGSVEEARLVFSKIPV-KDIVSWNTM 469



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 37/343 (10%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N+ IN F   G  R AI L    + +  E    +   ++  CA+ + L  G+ +H  I  
Sbjct: 65  NAKINKFCEMGDLRNAIELL--TKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +G+++   L   L+ MYV CG L                                  RKI
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQG-------------------------------RKI 151

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD +    V  WN ++  Y +    +E+++LF +MQ  G+  +  T    L   + LG +
Sbjct: 152 FDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKV 211

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
            +   +H ++ K  F  N  +  +L+  Y K G +  A  +F E+ E + +++ ++I G 
Sbjct: 212 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 271

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSP 447
            ++G + + +  F +M+ +G+  D  T + +L AC + G +  GR      + + F  S 
Sbjct: 272 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACF--SE 329

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           ++   + ++D+  + G L  A ++   M     +V W ++  A
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAA 371


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 304/543 (55%), Gaps = 32/543 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N   WN+ +  + +   + ++ DL+ QM+   G RP+ FTYP L + C   G   LG +I
Sbjct: 309 NVVLWNLMLVAYGQISDLAKSFDLFCQMV-AAGVRPNEFTYPCLLRTCTYAGEINLGEQI 367

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               +K GF+ DMYV   +I ++   G L  A  + +    +++VSW S+I G+V+  F 
Sbjct: 368 HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFC 427

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EA+  F+DMQL  + PD + +   +SACA ++ +  G++IH  +  SG +  V + NAL
Sbjct: 428 KEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNAL 487

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +++Y +CG+ + A  +F+++ +K  ++                               WN
Sbjct: 488 VNLYARCGRSKEAFSLFEAIEHKDKIT-------------------------------WN 516

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            ++ G+ Q+   +EAL +F +M   G+K +  T V  +SA + L  +  G  IH  + K 
Sbjct: 517 GMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT 576

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
                  +  AL+ +Y KCG+I  A   F EM ERN +++  II   + HG  L+A+  F
Sbjct: 577 GCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLF 636

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            +M   GL P+++TF+G+L+AC H GLV+EG  YF  MSS   + P+  HY+C+VD+LGR
Sbjct: 637 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGR 696

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L+ A + +  MP++A+ +VW  L  ACR+H N+ IGE AA  LLEL+P DS  YVLL
Sbjct: 697 AGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLL 756

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +N Y  +  W     VRKMM++RGV K PG S IEV  +++ F V D+ HP   QIY  L
Sbjct: 757 SNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYL 816

Query: 582 VQL 584
             L
Sbjct: 817 ADL 819



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 215/455 (47%), Gaps = 34/455 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   ++ SW   + G+   G   EAV LY QM    G  P  +    +   C   
Sbjct: 98  RVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM-HCSGVVPTPYVLSSVLSACTKA 156

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L   G  +   V K G   +  V NA+I +++  G L LA  VF E    + V++N+LI
Sbjct: 157 ALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLI 216

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +   + G    A+ +F +M+L    PD VT+  +++ACA + DLN G+++H Y+ ++G++
Sbjct: 217 SRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMS 276

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  +L+D+YVKCG +  A EIF S     VV    M+V Y +    D+A K FD  
Sbjct: 277 PDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQIS--DLA-KSFD-- 331

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                     LF +M A G++P+  T    L  C+  G ++ G 
Sbjct: 332 --------------------------LFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGE 365

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH    K  F  ++ +   L+DMY+K G + KA ++   +  ++ +++T++I G   H 
Sbjct: 366 QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHE 425

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  F +M   G+ PD I     +SAC     + +G++  +++  +   S  +  +
Sbjct: 426 FCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRV-YVSGYSADVSIW 484

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + +V+L  R G  +EA  L  ++    D + W  +
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEH-KDKITWNGM 518



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 180/393 (45%), Gaps = 45/393 (11%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I    +  G   D    N +I ++   G +  A  VF++   R+ VSW ++++G+ R+G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             EA+ L+  M    V P    +  ++SAC +      GR +H  + + G      + NA
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ +Y++                               FG L +A ++F ++P    V +
Sbjct: 184 LIALYLR-------------------------------FGSLSLAERVFSEMPYCDRVTF 212

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N +I  + Q    + AL +F EM+ +G  PD VT    L+AC+ +G L+ G  +H ++ K
Sbjct: 213 NTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK 272

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
              + + ++  +L+D+Y KCG I +AL++F      N + +  ++           +   
Sbjct: 273 AGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDL 332

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM----- 455
           F +M+  G+ P+E T+  +L  C + G ++ G +       I  LS K    S M     
Sbjct: 333 FCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ-------IHLLSIKTGFESDMYVSGV 385

Query: 456 -VDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +D+  + G L++A +++  +  A DVV W ++
Sbjct: 386 LIDMYSKYGWLDKARRILEVLE-AKDVVSWTSM 417



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 163/357 (45%), Gaps = 37/357 (10%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS-ACAQLEDLNLGRE 201
           R   S N  + GF+    P + + LF        +  +   +G V  ACA  E    G  
Sbjct: 4   RAAASLNKSLTGFLAHEDPEKLLSLFA------AKVRQCRGLGSVDFACALRE--CRGSV 55

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
            HW           PL   +    + CG            + +  ++   +I  YAK G 
Sbjct: 56  KHW-----------PLVPVIHAKAITCG------------LGEDRIAGNLLIDLYAKKGL 92

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +  AR++F+ L  +  V W A++ GY +    +EA+ L+H+M  +G+ P        LSA
Sbjct: 93  VQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSA 152

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C++    + G  +H  + K+      V+G AL+ +Y + G+++ A +VF EMP  + +T+
Sbjct: 153 CTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTF 212

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
             +I   A  G    A+  F EM   G  PD +T   +L+AC   G +++G++  + +  
Sbjct: 213 NTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK 272

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
              +SP       ++DL  + G++ EA ++ +S     +VV+W  +  A   +G +S
Sbjct: 273 A-GMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDR-TNVVLWNLMLVA---YGQIS 324


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 298/540 (55%), Gaps = 32/540 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+ + G  R A+++   M      +P   T   +    ++L L  +G EI G+
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVNLMCEEN-LKPSFITIVSVLPAVSALRLIRIGKEIHGY 261

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            ++ GFD  + +  A++ ++  CG L  A  +FD    RN+VSWNS+I+ +V++  P+EA
Sbjct: 262 AMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +F+ M  E V+P +V+++G + ACA L DL  GR IH    E  L   V + N+L+ M
Sbjct: 322 MVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISM 381

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KC ++                               D A  +F  L  + +V WNA+I
Sbjct: 382 YCKCKEV-------------------------------DTAASMFGKLQSRTIVSWNAMI 410

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            G+ Q  R  EAL  F +MQA  +KPD  T V  ++A ++L       WIH  + +   +
Sbjct: 411 LGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLD 470

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            NV + TALVDMYAKCG I  A  +F  M ER+  T+ A+I G   HG    A+  F EM
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEM 530

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
               + P+ +TFL ++SAC H GLV+ G K F  M   + + P + HY  MVDLLGR+G 
Sbjct: 531 QKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGR 590

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L EA   I  MP+   V V+GA+  AC++H NV+  E+ A +L EL+P+D G +VLLAN+
Sbjct: 591 LNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANI 650

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           YR ++MWE+ G+VR  M  +G+ KTPGCS +E+   ++ F     +HP  ++IY  L +L
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKL 710



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 251/507 (49%), Gaps = 42/507 (8%)

Query: 4   TGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
            GL       ++L++ FC      ++D   ++   +    +  +   ++GF +   + +A
Sbjct: 63  NGLYQEHLFQTKLVSLFCRYG---SVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +  + +M R+    P  + +  L KVC       +G EI G ++K GF +D++    + +
Sbjct: 120 LKFFVRM-RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  C  +  A  VFD    R+LVSWN+++ G+ ++G  R A+ +   M  E ++P  +T
Sbjct: 179 MYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFIT 238

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           ++ ++ A + L  + +G+EIH Y   +G    V +A AL+DMY KCG L++A  +FD M+
Sbjct: 239 IVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGML 298

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            + VVS                               WN++I  YVQ +  KEA+ +F +
Sbjct: 299 ERNVVS-------------------------------WNSMIDAYVQNENPKEAMVIFQK 327

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M   G+KP  V+ +  L AC+ LG L+ G +IH+   +   + NV +  +L+ MY KC  
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE 387

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A  +F ++  R  +++ A+I G A +G+ ++A++YFS+M    + PD  T++ +++A
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
                +     K+   +     L   +   + +VD+  + G +  A +LI  M     V 
Sbjct: 448 IAELSITHHA-KWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVT 505

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLE 509
            W A+      HG   IG +AA++L E
Sbjct: 506 TWNAMIDGYGTHG---IG-KAALELFE 528



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 199/437 (45%), Gaps = 47/437 (10%)

Query: 66  YKQMLRNGGTRPDN-FTYP--LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY----VHN 118
           ++  L      P N + +P  LL + C+SL       +   H+L L F   +Y       
Sbjct: 21  HRHFLSQRNYIPANVYEHPAALLLERCSSL-------KELRHILPLIFKNGLYQEHLFQT 73

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            ++ +F   G +  A  VF+    +  V + +++ GF +     +A++ F  M+ + VEP
Sbjct: 74  KLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEP 133

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
                  ++  C    +L +G+EIH  + +SG +L +     L +MY KC ++  A    
Sbjct: 134 VVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEA---- 189

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                                      RK+FD +PE+ +V WN I+ GY Q   ++ AL 
Sbjct: 190 ---------------------------RKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           + + M    +KP  +T V  L A S L  +  G  IH +  +  F+  V + TALVDMYA
Sbjct: 223 MVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYA 282

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG++  A  +F  M ERN +++ ++I     +    +A+  F +M+  G+ P +++ +G
Sbjct: 283 KCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMG 342

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
            L AC   G ++ GR +  ++S    L   +   + ++ +  +   ++ A  +   +  +
Sbjct: 343 ALHACADLGDLERGR-FIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKL-QS 400

Query: 479 ADVVVWGALFFACRLHG 495
             +V W A+      +G
Sbjct: 401 RTIVSWNAMILGFAQNG 417


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 322/600 (53%), Gaps = 52/600 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++ K LD   +   ++   N  SW+  I G ++   +R  ++L+K+M +  G      T+
Sbjct: 220 AKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEM-QKAGVGVSQSTF 278

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F+ CA L    LG ++ GH LK  F  D+ +  A + +++ C +L  A  +F+    
Sbjct: 279 ASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPN 338

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            NL S+N++I G+ RS               + +  DEV++ G   ACA ++    G ++
Sbjct: 339 HNLQSYNAIIVGYARSD--------------KGLGLDEVSLSGAFRACAVIKGDLEGLQV 384

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG------- 255
           H    +S     + +ANA++DMY KCG L  A  +F+ MV++  VS   +I         
Sbjct: 385 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE 444

Query: 256 ------------------------------YAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
                                         Y+K G ++ A K+ D L E+ VV WNAII 
Sbjct: 445 EKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 504

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           G+   K+S+EA   F +M   G+ PD  T    L  C+ L  ++ G  IH  I K+    
Sbjct: 505 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 564

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +  + + LVDMY+KCGN+     +F + P R+ +T+ A++ G A HG   +A+  F  M 
Sbjct: 565 DAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ 624

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
              + P+  TFL +L AC H GLV++G  YF  M S + L P+L+HYSC+VD++GRSG +
Sbjct: 625 LENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQV 684

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
            +A +LI  MP  AD V+W  L   C++HGNV + E+AA  +L+L+P+DS  YVLL+N+Y
Sbjct: 685 SKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIY 744

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            ++ MW E  K+RKMM   G++K PGCS IE+   ++ F+V DK+HP  ++IY+ L  LT
Sbjct: 745 ANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLT 804



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 246/494 (49%), Gaps = 42/494 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+L  G  R+ +D++ QM R G T  D  T+ ++ K C+SL     G +I G 
Sbjct: 141 SWNSLISGYLHNGDHRKVIDVFLQMGRMG-TVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K+GFD D+   +A++ ++  C  L  +   F     +N VSW+++I G V++   R  
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGG 259

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF++MQ   V   + T   +  +CA L  L LG ++H +  ++     V +  A +DM
Sbjct: 260 LELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDM 319

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK----FGFLDIARK--------IFDDL 272
           Y+KC  L  A+++F+S+ N  + S   +IVGYA+     G  +++          I  DL
Sbjct: 320 YMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDL 379

Query: 273 P-------------EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
                         +  +   NAI+  Y +     EA  +F EM    +  DAV+    +
Sbjct: 380 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM----VSRDAVSWNAII 435

Query: 320 SACSQLGALDD--GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           +A  Q G  +    ++IH  I K    L+  +G AL+DMY+KCG + KA ++   + E+ 
Sbjct: 436 AAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQT 495

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++ AII G +L  ++ +A   FS+M+ +G+ PD  T+  IL  C +   V+ G++  A
Sbjct: 496 VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA 555

Query: 438 QMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           Q   I +   +   Y  S +VD+  + G +++ + +    P   D V W A+      HG
Sbjct: 556 Q---IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHG 611

Query: 496 NVSIGERAAMKLLE 509
              +GE  A+K+ E
Sbjct: 612 ---LGEE-ALKIFE 621



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 204/443 (46%), Gaps = 62/443 (13%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D    NA++  +   GD+G+A  +FD    R++VSWNSLI+G++ +G  R+ I +F  M 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
                 D  T   ++ +C+ LED   G +IH    + G    V   +AL+DMY KC KL 
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKL- 225

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
                                         D + + F  +PEK  V W+AII G VQ   
Sbjct: 226 ------------------------------DCSIQFFHSMPEKNWVSWSAIIAGCVQNDD 255

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            +  L LF EMQ  G+     T      +C+ L AL  G  +H    K +F  +VV+GTA
Sbjct: 256 LRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTA 315

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            +DMY KC N++ A ++F+ +P  N  +Y AII G A   K            G+GL  D
Sbjct: 316 TLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDK------------GLGL--D 361

Query: 413 EITFLGILSACC--HGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
           E++  G   AC    G L  EG +     M S+ +    +   + ++D+ G+ G L EA 
Sbjct: 362 EVSLSGAFRACAVIKGDL--EGLQVHGLSMKSLCQ--SNICVANAILDMYGKCGALVEAC 417

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGN------VSIGERAAMKLLELDPQDSGIYVLLAN 523
            +   M ++ D V W A+  A   +GN      + I  R     L L   DS + + L +
Sbjct: 418 LVFEEM-VSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGL---DSFVGIALID 473

Query: 524 MYRDSNMWEEAGKVRKMMEERGV 546
           MY    M E+A K+   + E+ V
Sbjct: 474 MYSKCGMMEKAEKLHDRLAEQTV 496



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 165/347 (47%), Gaps = 29/347 (8%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+L       N   +S F    I  F   Q    +    + I     C+  + L  G++ 
Sbjct: 7   RHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHI--FQECSDRKALCPGKQA 64

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  +  +    TV + N L+ MY+KC  LE A ++FD M  +  VS   M+ GYA  G +
Sbjct: 65  HARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDI 124

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            +A+K+FD +PE+ VV WN++I GY+     ++ + +F +M   G   D  T    L +C
Sbjct: 125 GVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSC 184

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           S L     GI IH    K  F+ +VV G+AL+DMYAKC  +  ++Q FH MPE+N ++++
Sbjct: 185 SSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWS 244

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           AII G   +      +  F EM   G+   + TF  +  +C   GL            S 
Sbjct: 245 AIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSC--AGL------------SA 290

Query: 443 FRLSPKLKHYSCMVD-----LLGRSGL--------LEEAEQLIRSMP 476
            RL  +L  ++   D     ++G + L        L +A++L  S+P
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/574 (37%), Positives = 326/574 (56%), Gaps = 18/574 (3%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFS---------WNVAIRGFL 54
           TG+I +    +R++   A S    L    + +F+  +  SFS         WN  I+   
Sbjct: 31  TGIIKNSNLTTRIVLAFAASRRPYLAEFARCVFHEYHVCSFSPGEMEDPFLWNAVIKSHS 90

Query: 55  ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
                R+A+ L+  ML NG    D F+  L+ K C+ LG    G +I G + K G   D+
Sbjct: 91  HGKDPRQALLLFCLMLENG-VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLRKTGLWSDL 149

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           ++ N +I +++ CG LG A  +FD    R+ VS+NS+ING+V+ G    A  LF  M  E
Sbjct: 150 FLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPRE 209

Query: 175 RVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
               + ++   M+S  AQ  E +N+  ++   + E  L       N+++D YVK G++E 
Sbjct: 210 M--KNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISW----NSMIDGYVKHGRIED 263

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A+ +FD M  + VV+C TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ K  
Sbjct: 264 AKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCH 323

Query: 294 KEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            EAL +F++M+  + + PD  T V  LSA +QLG L     +H +I ++ F L   LG A
Sbjct: 324 MEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVA 383

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMY+KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A +   ++  + ++PD
Sbjct: 384 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPD 443

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           +ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+ LI
Sbjct: 444 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 503

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
             MP+  + V+W     AC  H     GE  A  L+     +   YVLL+NMY    MW+
Sbjct: 504 EEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWK 563

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +  +VR MM+ER +EK PGCS IE++G ++EF V
Sbjct: 564 DVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/452 (42%), Positives = 284/452 (62%), Gaps = 10/452 (2%)

Query: 144 NLVSWNSLINGFVRSGFPR-------EAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLED 195
           N  SWN++I     S           EA+  F  M  +  VEP++ T   ++ ACA+L  
Sbjct: 79  NCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLAR 138

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-DSMVNKTVVSCTTMIV 254
           +  G+++H ++ + GL     + + L+ +YV CG ++ A  +F  + +   VV    MI 
Sbjct: 139 IEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMID 198

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           GY + G L  +R++FD +P K VV WN +I G  Q    KEA+ +FH+MQ   + P+ VT
Sbjct: 199 GYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVT 258

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            V  L A S+LGA++ G W+H F EK    ++ VLG+AL+DMY+KCG+I KA+QVF  + 
Sbjct: 259 LVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR 318

Query: 375 -ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            ++N +T++AIIGGLA+HG+A DA+ +F  M   G+ P ++ ++G+LSAC H GLV+EGR
Sbjct: 319 NKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGR 378

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
             +  M +I  L P+++HY CMVDLLGR+G LEEAEQLI +MP+  D V+  AL  AC++
Sbjct: 379 SIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKM 438

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           HGN+ +GER A  L+   P DSG YV L+NM+     WE   KVR  M+E  + K PGCS
Sbjct: 439 HGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCS 498

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            IE++G+++EF+V D SHP  E I+  L +++
Sbjct: 499 WIELDGVIHEFLVEDDSHPRAEGIHSMLEEMS 530



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 203/434 (46%), Gaps = 79/434 (18%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR--- 60
           TG I H  A + L+ F  +S  + + Y  K    + +PN FSWN  IR   ++       
Sbjct: 41  TGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFH 100

Query: 61  ----EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
               EA+  +  ML +G   P+ FT+P + K CA L     G ++ G V+KLG   D +V
Sbjct: 101 VNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFV 160

Query: 117 HNAVIHVFVSC--------------------------------GDLGLACNVFDESCVRN 144
            + ++ V+V C                                GDL  +  +FD    ++
Sbjct: 161 RSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKS 220

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +VSWN +I+G  ++G  +EAI +F DMQL  V P+ VT++ ++ A ++L  + LG+ +H 
Sbjct: 221 VVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHL 280

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           +  ++ + +   L +AL+DMY KCG ++ A ++F+ + NK                    
Sbjct: 281 FAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNK-------------------- 320

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                     K  + W+AIIGG     R+++AL  F  MQ  G+ P  V  +  LSACS 
Sbjct: 321 ----------KNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSH 370

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGT-----ALVDMYAKCGNIAKALQVFHEMPER-NS 378
            G +++G    R I     N+  +L        +VD+  + G + +A Q+   MP + + 
Sbjct: 371 AGLVEEG----RSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDD 426

Query: 379 LTYTAIIGGLALHG 392
           +   A++G   +HG
Sbjct: 427 VILKALLGACKMHG 440


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 321/564 (56%), Gaps = 36/564 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAI-SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  + +I +    SRLI FC    E+ NL Y   +  ++  P+ + WN  IRG+  +   
Sbjct: 29  MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +A+  Y++MLR G + PD FT+P + K C+ L     G  + G V+K GF+V+MYV   
Sbjct: 89  DKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTC 147

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++H+++ CG++     VF++    N+V+W SLI+GFV +    +AI  FR+MQ   V+ +
Sbjct: 148 LLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKAN 207

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E  M+ ++ AC + +D+  G+  H ++   G            D Y            F 
Sbjct: 208 ETIMVDLLVACGRCKDIVTGKWFHGFLQGLGF-----------DPY------------FQ 244

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           S V   V+  T++I  YAK G L  AR +FD +PE+ +V WN+II GY Q   ++EAL +
Sbjct: 245 SKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCM 304

Query: 300 FHEMQATGIKPDAVTTVHCLSA-----CSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           F +M   GI PD VT +  + A     CSQLG       IH ++ K  F  +  +  ALV
Sbjct: 305 FLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQS-----IHAYVSKTGFVKDAAIVCALV 359

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDE 413
           +MYAK G+   A + F ++ +++++ +T +I GLA HG   +A+S F  M   G   PD 
Sbjct: 360 NMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDG 419

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           IT+LG+L AC H GLV+EG++YFA+M  +  L P ++HY CMVD+L R+G  EEAE+L++
Sbjct: 420 ITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVK 479

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           +MP+  +V +WGAL   C +H N+ + +R    + E +   SGIYVLL+N+Y  +  W +
Sbjct: 480 TMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWAD 539

Query: 534 AGKVRKMMEERGVEKTPGCSSIEV 557
              +R+ M+ + V+K  G SS+E 
Sbjct: 540 VKLIRESMKSKRVDKVLGHSSVET 563


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 303/542 (55%), Gaps = 33/542 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G  + G   EA  ++ +M + G   PD+ TY  L     S G      E+  H
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV-PDSTTYLSLLNTHVSTGAWEWVKEVHKH 360

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +++G   D+ V +A +H+++ CG +  A  +FD+  VRN+ +WN++I G  +    REA
Sbjct: 361 AVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREA 420

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF  M+ E   PD  T + ++SA    E L   +E+H Y  ++GL + + + NAL+ M
Sbjct: 421 LSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHM 479

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG                     TM            A+++FDD+ E+ V  W  +I
Sbjct: 480 YAKCG--------------------NTMY-----------AKQVFDDMVERNVTTWTVMI 508

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            G  Q     EA +LF +M   GI PDA T V  LSAC+  GAL+    +H         
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++ +G ALV MYAKCG++  A +VF +M ER+  ++T +IGGLA HG+ LDA+  F +M
Sbjct: 569 SDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKM 628

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G  P+  +F+ +LSAC H GLVDEGR+ F  ++  + + P ++HY+CMVDLLGR+G 
Sbjct: 629 KLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQ 688

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           LEEA+  I +MP+      WGAL  AC  +GN+ + E AA + L+L P+ +  YVLL+N+
Sbjct: 689 LEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 748

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           Y  +  WE+   VR MM+ RG+ K PG S IEV+  ++ F+V D SHPE ++IY  L  L
Sbjct: 749 YAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDL 808

Query: 585 TR 586
            +
Sbjct: 809 IK 810



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 237/475 (49%), Gaps = 37/475 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S ++D    +   +   + FSW V I G  + G+ +EA  L+ QM R GG  P+  TY
Sbjct: 177 AKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER-GGCLPNLTTY 235

Query: 83  PLLFKVCA--SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
             +    A  S G      E+  H  K GF  D+ V NA+IH++  CG +  A  VFD  
Sbjct: 236 LSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM 295

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
           C R+++SWN++I G  ++G   EA  +F  MQ E   PD  T + +++           +
Sbjct: 296 CDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVK 355

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E+H +  E GL   + + +A + MY++CG ++ A+ IFD +  + V +            
Sbjct: 356 EVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTT------------ 403

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                              WNA+IGG  Q K  +EAL+LF +M+  G  PDA T V+ LS
Sbjct: 404 -------------------WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILS 444

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           A     AL+    +H +       +++ +G ALV MYAKCGN   A QVF +M ERN  T
Sbjct: 445 ANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTT 503

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +T +I GLA HG   +A S F +M+  G++PD  T++ ILSAC   G ++  ++  +   
Sbjct: 504 WTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAV 563

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +   L   L+  + +V +  + G +++A ++   M +  DV  W  +      HG
Sbjct: 564 NA-GLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHG 616



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 219/443 (49%), Gaps = 42/443 (9%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           I G+ E G   +A+ +Y QM R GG +P+  TY  + K C S      G +I  H+++ G
Sbjct: 2   IGGYAEYGYAEDAMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
           F  D+ V  A+++++V CG +  A  +FD+   RN++SW  +I G    G  +EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            MQ E   P+  T + +++A A    L   +E+H +   +GL L + + NAL+ MY K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            ++ A  +FD MV + + S T M                               IGG  Q
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVM-------------------------------IGGLAQ 209

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCL--SACSQLGALDDGIWIHRFIEKENFNLNV 347
             R +EA +LF +M+  G  P+  T +  L  SA +  GAL+    +H+   K  F  ++
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
            +G AL+ MYAKCG+I  A  VF  M +R+ +++ A+IGGLA +G   +A + F +M   
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 408 GLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
           G +PD  T+L +L+     G    V E  K+  ++     L   L+  S  V +  R G 
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVG----LVSDLRVGSAFVHMYIRCGS 385

Query: 465 LEEAEQLIRSMPMAADVVVWGAL 487
           +++A QLI       +V  W A+
Sbjct: 386 IDDA-QLIFDKLAVRNVTTWNAM 407



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 188/398 (47%), Gaps = 34/398 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D    I   +   N  SW V I G    G+ +EA   + QM R G   P+++TY  + 
Sbjct: 80  SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI-PNSYTYVSIL 138

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
              AS G      E+  H +  G  +D+ V NA++H++   G +  A  VFD    R++ 
Sbjct: 139 NANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIF 198

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA--QLEDLNLGREIHW 204
           SW  +I G  + G  +EA  LF  M+     P+  T + +++A A      L   +E+H 
Sbjct: 199 SWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK 258

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           +  ++G    + + NAL+ MY KCG +                               D 
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSI-------------------------------DD 287

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR +FD + ++ V+ WNA+IGG  Q     EA  +F +MQ  G  PD+ T +  L+    
Sbjct: 288 ARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVS 347

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
            GA +    +H+   +     ++ +G+A V MY +CG+I  A  +F ++  RN  T+ A+
Sbjct: 348 TGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAM 407

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           IGG+A      +A+S F +M   G  PD  TF+ ILSA
Sbjct: 408 IGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 205/440 (46%), Gaps = 53/440 (12%)

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G+   G+  +A++++  M+ E  +P+E+T + ++ AC     L  G++IH +I +SG
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
               V +  AL++MYVKCG +                               D A+ IFD
Sbjct: 61  FQSDVRVETALVNMYVKCGSI-------------------------------DDAQLIFD 89

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            + E+ V+ W  +IGG     R +EA   F +MQ  G  P++ T V  L+A +  GAL+ 
Sbjct: 90  KMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              +H         L++ +G ALV MYAK G+I  A  VF  M ER+  ++T +IGGLA 
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACC---HGGL--VDEGRKYFAQMSSIFRL 445
           HG+  +A S F +M   G +P+  T+L IL+A      G L  V E  K+  +   I   
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFI--- 266

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
              L+  + ++ +  + G +++A  +   M    DV+ W A+      +G    G  A  
Sbjct: 267 -SDLRVGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMIGGLAQNG---CGHEAFT 321

Query: 506 KLLELDPQ----DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
             L++  +    DS  Y+ L N +  +  WE   +V K   E G+      S + V    
Sbjct: 322 IFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGL-----VSDLRVGSAF 376

Query: 562 YEFIVRDKSHPELEQIYDCL 581
               +R  S  + + I+D L
Sbjct: 377 VHMYIRCGSIDDAQLIFDKL 396



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 2/216 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N  Y  ++  ++   N  +W V I G  + G   EA  L+ QMLR G   PD  TY  + 
Sbjct: 485 NTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG-IVPDATTYVSIL 543

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CAS G      E+  H +  G   D+ V NA++H++  CG +  A  VFD+   R++ 
Sbjct: 544 SACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVY 603

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW  +I G  + G   +A+ LF  M+LE  +P+  + + ++SAC+    ++ GR     +
Sbjct: 604 SWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSL 663

Query: 207 SES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           ++  G+  T+     ++D+  + G+LE A+    +M
Sbjct: 664 TQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNM 699


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/511 (36%), Positives = 297/511 (58%), Gaps = 32/511 (6%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
             RPD+ T+ L    CA LG    G  +       G+  D++V ++++H++   G +G A
Sbjct: 103 AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VFD    R+ V+W++++ GFV +G P +AI+++R M+ + V+ DEV MIG++ AC   
Sbjct: 163 VKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            ++ +G  +H ++   G+ + V  A +L+DMY                            
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMY---------------------------- 254

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
              AK G LD+A ++F  +  +  V W+A+I G+ Q  +S EAL LF  MQA+GI+PD+ 
Sbjct: 255 ---AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSG 311

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             V  L ACS +G L  G  +H FI +  F+ N +LGTA +DMY+KCG++A A  +F+ +
Sbjct: 312 ALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMI 370

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R+ + + A+I     HG+  DA++ F EM   G+ PD  TF  +LSA  H GLV+EG+
Sbjct: 371 SDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            +F  M + F+++P  KHY C+VDLL RSGL+EEA  L+ SM     V +W AL   C  
Sbjct: 431 LWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLN 490

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           +  + +GE  A  +LEL P D G+  L++N+Y  +  W++  +VRK+M++ G +K PGCS
Sbjct: 491 NKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCS 550

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           SIE+ G  + F++ D+SHP+ E+I   + +L
Sbjct: 551 SIEIRGTRHAFLMEDQSHPQREEIVSKVAKL 581



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 188/391 (48%), Gaps = 37/391 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  +W+  + GF+  G+  +A+ +Y++M R  G + D      + + C + 
Sbjct: 164 KVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-REDGVKGDEVVMIGVIQACTAA 222

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G  + GH+L+ G  +D+    +++ ++   G L +AC VF     RN VSW+++I
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +GF ++G   EA+RLFR+MQ   ++PD   ++  + AC+ +  L LGR +H +I      
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FD 341

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               L  A +DMY KCG L SA+ +F+                                +
Sbjct: 342 FNCILGTAAIDMYSKCGSLASAQMLFNM-------------------------------I 370

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG- 331
            ++ ++ WNA+I       R ++AL LF EM  TG++PD  T    LSA S  G +++G 
Sbjct: 371 SDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT-YTAIIGGLAL 390
           +W    +              LVD+ A+ G + +A  +   M    ++  + A++ G  L
Sbjct: 431 LWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSG-CL 489

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           + K L+     ++ I + L PD++  L ++S
Sbjct: 490 NNKKLELGESIADNI-LELQPDDVGVLALVS 519



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 35/340 (10%)

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           R G P  A+R+FR +      PD  T    +SACA+L DL  G  +     ++G    V 
Sbjct: 86  RRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + ++L+ +Y + G +  A ++FD M  +  V+ +TM                        
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTM------------------------ 180

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                  + G+V A +  +A+ ++  M+  G+K D V  +  + AC+    +  G  +H 
Sbjct: 181 -------VAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHG 233

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + +    ++VV  T+LVDMYAK G +  A +VF  M  RN ++++A+I G A +G++ +
Sbjct: 234 HLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDE 293

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  F  M   G+ PD    +  L AC + G +  GR     +   F  +  L   +  +
Sbjct: 294 ALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG--TAAI 351

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           D+  + G L  A Q++ +M    D+++W A+   C  HG 
Sbjct: 352 DMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGR 390



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 8/251 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   ++   + + N  SW+  I GF + G+  EA+ L++ M +  G +PD+        
Sbjct: 260 LDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALL 318

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+++G   LG  + G +++  FD +  +  A I ++  CG L  A  +F+    R+L+ 
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY-- 205
           WN++I      G  ++A+ LF++M    + PD  T   ++SA +    +  G+   W+  
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKL--WFGC 435

Query: 206 -ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD 263
            ++   +T        L+D+  + G +E A ++  SM    TV     ++ G      L+
Sbjct: 436 MVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLE 495

Query: 264 IARKIFDDLPE 274
           +   I D++ E
Sbjct: 496 LGESIADNILE 506


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 310/559 (55%), Gaps = 32/559 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    K+  ++ N N  S+N  I G+  + K  EA+ +++ +L+  G   D  +    F
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFR-LLQKSGLGLDEVSLSGAF 383

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           + CA +     G ++ G  +K     ++ V NA++ ++  CG L  AC VF+E   R+ V
Sbjct: 384 RACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAV 443

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN++I    ++G   + + LF  M    +EPDE T   ++ ACA  + LN G EIH  I
Sbjct: 444 SWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI 503

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            +S L L   +  AL+DMY KCG +E AE                               
Sbjct: 504 IKSRLGLDSFVGIALIDMYSKCGMMEKAE------------------------------- 532

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           K+ D L E+ VV WNAII G+   K+S+EA   F +M   G+ PD  T    L  C+ L 
Sbjct: 533 KLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLV 592

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            ++ G  IH  I K+    +  + + LVDMY+KCGN+     +F + P R+ +T+ A++ 
Sbjct: 593 TVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVC 652

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A HG   +A+  F  M    + P+  TFL +L AC H GLV++G  YF  M S + L 
Sbjct: 653 GYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLD 712

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P+L+HYSC+VD++GRSG + +A +LI  MP  AD V+W  L   C++HGNV + E+AA  
Sbjct: 713 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYS 772

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +L+L+P+DS  YVLL+N+Y ++ MW E  K+RKMM   G++K PGCS IE+   ++ F+V
Sbjct: 773 ILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLV 832

Query: 567 RDKSHPELEQIYDCLVQLT 585
            DK+HP  ++IY+ L  LT
Sbjct: 833 GDKAHPRSKEIYENLDVLT 851



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 244/489 (49%), Gaps = 42/489 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++ K LD   +   ++   N  SW+  I G ++   +R  ++L+K+M +  G      T+
Sbjct: 220 AKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEM-QKAGVGVSQSTF 278

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F+ CA L    LG ++ GH LK  F  D+ +  A + +++ C +L  A  +F+    
Sbjct: 279 ASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPN 338

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            NL S+N++I G+ RS    EA+ +FR +Q   +  DEV++ G   ACA ++    G ++
Sbjct: 339 HNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQV 398

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    +S     + +ANA++DMY KCG L  A  +F+ MV++                  
Sbjct: 399 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA---------------- 442

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                          V WNAII  + Q    ++ L+LF  M  +G++PD  T    L AC
Sbjct: 443 ---------------VSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 487

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +   AL+ G+ IH  I K    L+  +G AL+DMY+KCG + KA ++   + E+  +++ 
Sbjct: 488 AGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWN 547

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           AII G +L  ++ +A   FS+M+ +G+ PD  T+  IL  C +   V+ G++  AQ   I
Sbjct: 548 AIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ---I 604

Query: 443 FRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            +   +   Y  S +VD+  + G +++ + +    P   D V W A+      HG   +G
Sbjct: 605 IKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHG---LG 660

Query: 501 ERAAMKLLE 509
           E  A+K+ E
Sbjct: 661 EE-ALKIFE 668



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 229/474 (48%), Gaps = 40/474 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+L  G  R+ +D++ QM R G T  D  T+ ++ K C+SL     G +I G 
Sbjct: 141 SWNSLISGYLHNGDHRKVIDVFLQMGRMG-TVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K+GFD D+   +A++ ++  C  L  +   F     +N VSW+++I G V++   R  
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGG 259

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF++MQ   V   + T   +  +CA L  L LG ++H +  ++     V +  A +DM
Sbjct: 260 LELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDM 319

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y+KC  L  A+++F+S+ N  + S   +IVGYA+                          
Sbjct: 320 YMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYAR-------------------------- 353

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                + +  EAL +F  +Q +G+  D V+      AC+ +    +G+ +H    K    
Sbjct: 354 -----SDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQ 408

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            N+ +  A++DMY KCG + +A  VF EM  R+++++ AII     +G     +S F  M
Sbjct: 409 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 468

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS--CMVDLLGRS 462
           +  G+ PDE T+  +L AC     ++ G +     + I +    L  +    ++D+  + 
Sbjct: 469 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIH---NRIIKSRLGLDSFVGIALIDMYSKC 525

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL--DPQD 514
           G++E+AE+L   +     VV W A+     L       ++   K+LE+  DP +
Sbjct: 526 GMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 578



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 185/387 (47%), Gaps = 39/387 (10%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D    NA++  +   GD+G+A  +FD    R++VSWNSLI+G++ +G  R+ I +F  M 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
                 D  T   ++ +C+ LED   G +IH    + G    V   +AL+DMY KC KL 
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKL- 225

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
                                         D + + F  +PEK  V W+AII G VQ   
Sbjct: 226 ------------------------------DCSIQFFHSMPEKNWVSWSAIIAGCVQNDD 255

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            +  L LF EMQ  G+     T      +C+ L AL  G  +H    K +F  +VV+GTA
Sbjct: 256 LRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTA 315

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            +DMY KC N++ A ++F+ +P  N  +Y AII G A   K ++A+  F  +   GL  D
Sbjct: 316 TLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLD 375

Query: 413 EITFLGILSACC--HGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
           E++  G   AC    G L  EG +     M S+ +    +   + ++D+ G+ G L EA 
Sbjct: 376 EVSLSGAFRACAVIKGDL--EGLQVHGLSMKSLCQ--SNICVANAILDMYGKCGALVEAC 431

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGN 496
            +   M ++ D V W A+  A   +GN
Sbjct: 432 LVFEEM-VSRDAVSWNAIIAAHEQNGN 457



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 165/347 (47%), Gaps = 29/347 (8%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+L       N   +S F    I  F   Q    +    + I     C+  + L  G++ 
Sbjct: 7   RHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHI--FQECSDRKALCPGKQA 64

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  +  +    TV + N L+ MY+KC  LE A ++FD M  +  VS   M+ GYA  G +
Sbjct: 65  HARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDI 124

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            +A+K+FD +PE+ VV WN++I GY+     ++ + +F +M   G   D  T    L +C
Sbjct: 125 GVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSC 184

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           S L     GI IH    K  F+ +VV G+AL+DMYAKC  +  ++Q FH MPE+N ++++
Sbjct: 185 SSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWS 244

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           AII G   +      +  F EM   G+   + TF  +  +C   GL            S 
Sbjct: 245 AIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSC--AGL------------SA 290

Query: 443 FRLSPKLKHYSCMVD-----LLGRSGL--------LEEAEQLIRSMP 476
            RL  +L  ++   D     ++G + L        L +A++L  S+P
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/580 (35%), Positives = 314/580 (54%), Gaps = 46/580 (7%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F   +LI+  A S  + +   T     VQ PN   +N  IR      +  +A   +  M 
Sbjct: 53  FVVPKLIS--AFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQ 110

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           R+G    DNFT+P L KVC       +   +   + K GF  D++V N++I  +  CG  
Sbjct: 111 RDG-HYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSC 169

Query: 131 GLACN---VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G++            R++VSWNS+I+G  + G   EA ++F +M     E D ++     
Sbjct: 170 GISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMP----EKDGIS----- 220

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
                           W              N ++D YVK GK++ A ++FD M  + VV
Sbjct: 221 ----------------W--------------NTMLDGYVKVGKMDDAFKLFDEMPERNVV 250

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S +TM++GY K G +++AR +FD +P K +V W  I+ G+ +   ++EA++LF +M+   
Sbjct: 251 SWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKAC 310

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +K D  T +  L+AC++ G L  G  IH  I+  NF     +  ALVDMYAKCG +  A 
Sbjct: 311 LKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAY 370

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VF+++  ++ +++ A++ GLA+HG  + A+  F  M   G  P+++T +G+L AC H G
Sbjct: 371 DVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAG 430

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           L+D+G +YF+ M   + L P+++HY CMVDLLGR G LEEA +LIR+MPMA + ++WG L
Sbjct: 431 LIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTL 490

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR+H  V +       L+EL+P DSG + +L+N+Y  +  W      R  M   G +
Sbjct: 491 LGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTK 550

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           K  G SSIEVN  ++EF V D+SHP+ + IY  +  L RH
Sbjct: 551 KPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVINGL-RH 589



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 189/401 (47%), Gaps = 46/401 (11%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           ++   +LK    VD++V   +I  F  C  + LA N F++    N+  +N++I     + 
Sbjct: 38  QLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNS 97

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P +A   F  MQ +    D  T   ++  C     L +   +H  I + G    V + N
Sbjct: 98  QPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPN 157

Query: 220 ALMDMYVKCGK--LESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           +L+D Y KCG   + +A+++F SM   + VVS  +MI G AK G  + ARK+FD++PEK 
Sbjct: 158 SLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKD 217

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            + WN ++ GYV+  +  +A  LF EM      P+                         
Sbjct: 218 GISWNTMLDGYVKVGKMDDAFKLFDEM------PER------------------------ 247

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
                    NVV  + +V  Y K G++  A  +F +MP +N +++T I+ G A  G A +
Sbjct: 248 ---------NVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLARE 298

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCM 455
           AIS F +M    L  D  T + IL+AC   GL+  G K  A + ++ F+ + ++   + +
Sbjct: 299 AISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEIS--NAL 356

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           VD+  + G L  A  +   +    DVV W A+     +HG+
Sbjct: 357 VDMYAKCGRLNIAYDVFNDIK-NKDVVSWNAMLQGLAMHGH 396



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 181/396 (45%), Gaps = 53/396 (13%)

Query: 5   GLISHGFAPSRLI------AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           G +S  F P+ LI        C IS +K L        +V      SWN  I G  + G 
Sbjct: 148 GFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDV-----VSWNSMISGLAKGGL 202

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             EA  ++ +M        D  ++  +      +G     +++F  +     + ++   +
Sbjct: 203 YEEARKVFDEM-----PEKDGISWNTMLDGYVKVGKMDDAFKLFDEMP----ERNVVSWS 253

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            ++  +   GD+ +A  +FD+  V+NLVSW  +++GF   G  REAI LF  M+   ++ 
Sbjct: 254 TMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKL 313

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D  T++ +++ACA+   L LG +IH  I  +    T  ++NAL+DMY KCG+L  A ++F
Sbjct: 314 DNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVF 373

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           + + NK VVS                               WNA++ G        +AL 
Sbjct: 374 NDIKNKDVVS-------------------------------WNAMLQGLAMHGHGVKALE 402

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMY 357
           LF  M+  G  P+ VT +  L AC+  G +DDGI     +E++      V     +VD+ 
Sbjct: 403 LFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLL 462

Query: 358 AKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            + G + +A+++   MP   N++ +  ++G   +H 
Sbjct: 463 GRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHN 498


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/622 (35%), Positives = 336/622 (54%), Gaps = 75/622 (12%)

Query: 4   TGLISHGFAPSRLIAFCAISES-----KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           +GL++  +A SRL+ F   + +     + L +  ++   V++PN+F+ N  IR  L  G 
Sbjct: 30  SGLLADAYAASRLLLFTTSATAARLLPQPLHHSLQLFRLVRSPNAFTCNTLIRAALRQGL 89

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
                 LY  M       PD +T+PLL   CA+ G    G ++  H +K GF  ++Y+ N
Sbjct: 90  PHLCFPLYASM----PAAPDTYTHPLLAAACAARGDAREGRQVHSHAVKHGFGDNLYLRN 145

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           A++H++ +CG +  A  VFD   V + VSWN+++  +VR G   +A+ +F  M  ER   
Sbjct: 146 ALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGVFARMP-ERSAA 204

Query: 179 DEVTMI------GMVS---------------------ACAQLEDLNLG--------REIH 203
              +M+      GMV                      +C +  DL +         RE  
Sbjct: 205 AVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEG 264

Query: 204 WYISE----------------------------SGLTLTVPLANALMDMYVKCGKLESAE 235
           W + E                            +GL   V + NAL+ MY  C  + +A 
Sbjct: 265 WPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAAR 324

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FDS  +    S  +MI GY K G ++ A+ +F+ +P+K  V W+A+I G VQ  +S E
Sbjct: 325 RLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSE 384

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL +F  M+A  IKPD VT V  +SAC+ L AL+ G  +H +I +  +N+ +VLGT+L+D
Sbjct: 385 ALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLID 444

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEI 414
           MY KCG +  AL+VF  + E+ +  + A+I GLA++G    ++  FSEM   G+ +P EI
Sbjct: 445 MYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEI 504

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           TF G+LSAC HGGLV+EGR++F  M + +++ P ++HY CMVDLLGR+G + EAE LI+S
Sbjct: 505 TFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAEDLIQS 564

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MPM+ DV  WGAL  AC  H +  +GER   KL++LDP   G   +L+N+Y    MW+  
Sbjct: 565 MPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIYASEGMWQCV 624

Query: 535 GKVRKMMEERGVEKTPGCSSIE 556
             +R  M++  V K  GCS +E
Sbjct: 625 KDLRGSMKQH-VAKVAGCSVVE 645


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 308/578 (53%), Gaps = 34/578 (5%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL++  F  S L+     +++  +    ++   +   N  SW   I G +  G  +EA+
Sbjct: 145 TGLVNSVFVGSALLDM--YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEAL 202

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             + +M R+     D++T+ +  K CA  G    G EI    +K GFDV  +V N +  +
Sbjct: 203 VYFSEMWRSR-VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATM 261

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG L     +F++  +R++VSW ++I   V+ G    A++ F  M+   V P+E T 
Sbjct: 262 YNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTF 321

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++S CA L  +  G ++H  I   GL  ++ + N++M MY KCG+L S+         
Sbjct: 322 AAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS-------- 373

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                                   IF ++  + +V W+ II GY Q     EA  L   M
Sbjct: 374 -----------------------VIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWM 410

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +  G KP        LSAC  +  L+ G  +H ++         ++ +AL++MY KCG+I
Sbjct: 411 RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSI 470

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A ++F      + +++TA+I G A HG + + I  F ++  VGL PD +TF+G+LSAC
Sbjct: 471 EEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSAC 530

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLVD G +YF  MS  +++SP  +HY CM+DLL R+G L +AE +I +MP   D VV
Sbjct: 531 SHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVV 590

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L  ACR+HG+V  G R A ++L+L+P  +G ++ LAN+Y     W EA  +RK+M+ 
Sbjct: 591 WSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKS 650

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +GV K PG S I+V  L++ F+  D+SHP+ E IY+ L
Sbjct: 651 KGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNML 688



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 185/390 (47%), Gaps = 38/390 (9%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
            D+   N  +   V  G LG A  +FD+   ++ +SW +LI+G+V +    EA+ LF++M
Sbjct: 47  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 172 QLE---RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
           ++E   R++P  +++     AC    D+N G  +H Y  ++GL  +V + +AL+DMY K 
Sbjct: 107 RVESGLRIDPFILSLAH--KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKN 164

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           GK+     +F  M  + VVS T                               AII G V
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWT-------------------------------AIITGLV 193

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           +A  +KEAL  F EM  + ++ D+ T    L AC+  GAL+ G  IH    K+ F+++  
Sbjct: 194 RAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF 253

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +   L  MY KCG +   L +F +M  R+ +++T II  L   G+   A+  F  M    
Sbjct: 254 VANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           + P+E TF  ++S C +   ++ G +  A +  +  L+  L   + ++ +  + G L  +
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHL-GLAASLSVENSIMTMYAKCGQLTSS 372

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVS 498
             +   M    D+V W  +       G+VS
Sbjct: 373 SVIFHEMTR-RDIVSWSTIIAGYSQGGHVS 401



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 5/256 (1%)

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTV 316
           K G L  AR++FD + +K  + W  +I GYV A  S EAL LF  M+  +G++ D     
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
               AC     ++ G  +H +  K     +V +G+AL+DMY K G I +  +VFHEMP R
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N +++TAII GL   G   +A+ YFSEM    +  D  TF   L AC   G ++ GR+  
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 437 AQ-MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           AQ M   F +S  + +   +  +  + G LE    L   M M  DVV W  +       G
Sbjct: 241 AQAMKKGFDVSSFVAN--TLATMYNKCGKLEYGLTLFEKMSM-RDVVSWTTIITTLVQMG 297

Query: 496 NVSIGERAAMKLLELD 511
                 +A +++ E D
Sbjct: 298 QEECAVQAFIRMRESD 313


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/560 (37%), Positives = 311/560 (55%), Gaps = 33/560 (5%)

Query: 27  NLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           NL  C+  LFN + N N  S+N  I G+  + K  EA+ +++ +L+  G   D  +    
Sbjct: 261 NLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFR-LLQKSGLGLDEVSLSGA 319

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            + CA +     G ++ G  +K     ++ V NA++ ++  CG L  AC VF+E   R+ 
Sbjct: 320 XRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 379

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           VSWN++I    ++G   + + LF  M    +EPDE T   ++ ACA  + LN G EIH  
Sbjct: 380 VSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNR 439

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           I +S + L   +  AL+DMY KCG +E AE                              
Sbjct: 440 IIKSRMGLDSFVGIALIDMYSKCGMMEKAE------------------------------ 469

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
            K+ D L E+ VV WNAII G+   K+S+EA   F +M   G+ PD  T    L  C+ L
Sbjct: 470 -KLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL 528

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
             ++ G  IH  I K+    +  + + LVDMY+KCGN+     +F + P R+ +T+ A++
Sbjct: 529 VTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMV 588

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G A HG   +A+  F  M    + P+  TFL +L AC H GLV++G  YF  M S + L
Sbjct: 589 CGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGL 648

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P+L+HYSC+VD++GRSG + +A +LI  MP  AD V+W  L   C++HGNV + E+AA 
Sbjct: 649 DPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAY 708

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
            +L+L+P+DS  YVLL+N+Y ++ MW E  K+RKMM   G++K PGCS IE+   ++ F+
Sbjct: 709 SILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFL 768

Query: 566 VRDKSHPELEQIYDCLVQLT 585
           V DK+HP  ++IY+ L  LT
Sbjct: 769 VGDKAHPRSKEIYENLDVLT 788



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 150/572 (26%), Positives = 252/572 (44%), Gaps = 112/572 (19%)

Query: 11  FAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           F P+  +  C I    +  +L +  K+   +   ++ SWN  + G+   G +  A  L+ 
Sbjct: 73  FKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFD 132

Query: 68  QMLRNG--------------GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD 113
            M   G              GT  D  T+ ++ K C+SL     G +I G  +K+GFD D
Sbjct: 133 AMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCD 192

Query: 114 MYVHNAVIHVFVSCG--------------------------------------------- 128
           +   +A++ ++  C                                              
Sbjct: 193 VVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTAT 252

Query: 129 -DLGLACN--------VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
            D+ + CN        +F+     NL S+N++I G+ RS    EA+ +FR +Q   +  D
Sbjct: 253 LDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLD 312

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           EV++ G   ACA ++    G ++H    +S     + +ANA++DMY KCG L  A  +F+
Sbjct: 313 EVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFE 372

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            MV++                                 V WNAII  + Q    ++ L+L
Sbjct: 373 EMVSRDA-------------------------------VSWNAIIAAHEQNGNEEKTLSL 401

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F  M  +G++PD  T    L AC+   AL+ G+ IH  I K    L+  +G AL+DMY+K
Sbjct: 402 FVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSK 461

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG + KA ++   + E+  +++ AII G +L  ++ +A   FS+M+ +G+ PD  T+  I
Sbjct: 462 CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI 521

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPM 477
           L  C +   V+ G++  AQ   I +   +   Y  S +VD+  + G +++ + +    P 
Sbjct: 522 LDTCANLVTVELGKQIHAQ---IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP- 577

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
             D V W A+      HG   +GE  A+K+ E
Sbjct: 578 NRDFVTWNAMVCGYAQHG---LGEE-ALKIFE 605



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 217/476 (45%), Gaps = 46/476 (9%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+  +F+ C+       G +    ++   F   ++V N +I +++ C DLG A  VFD  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFR-------------DMQLERVEP--DEVTMIG 185
             R+ VSWN+++ G+   G    A +LF              D ++ R+    D  T   
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC----GKLESAEEIFDSM 241
           ++ +C+ LED   G +IH    + G    V   +AL+DMY KC      L    E+F  M
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 242 VNKTVVSC------------TTMIVGYAKF-------GFLDIARKIFDDLPEKYVVPWNA 282
               V +             T +++G A            D + ++F+ LP   +  +NA
Sbjct: 224 QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           II GY ++ +  EAL +F  +Q +G+  D V+      AC+ +    +G+ +H    K  
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL 343

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
              N+ +  A++DMY KCG + +A  VF EM  R+++++ AII     +G     +S F 
Sbjct: 344 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFV 403

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS--CMVDLLG 460
            M+  G+ PDE T+  +L AC     ++ G +     + I +    L  +    ++D+  
Sbjct: 404 WMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIH---NRIIKSRMGLDSFVGIALIDMYS 460

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL--DPQD 514
           + G++E+AE+L   +     VV W A+     L       ++   K+LE+  DP +
Sbjct: 461 KCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 314/534 (58%), Gaps = 34/534 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY-PLLFKVCASLGLRFLGYEIFGH 104
           WN  I G+++ G M +A  L+ +M+ + G +PD+ T+   L  +  S  L+ +  EI G+
Sbjct: 180 WNRMIGGYVQNGFMDDASMLFNEMI-SAGIKPDSITFTSFLPSLAESSSLKQIK-EIHGY 237

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +++ G  +D+Y+++A+I ++  C D  +AC +F+ S   ++V + ++I+G+V +G  ++A
Sbjct: 238 IVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDA 297

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +FR +  +++ P+ +T   ++ ACA L  + LGRE+H YI ++ L    P+ +A+M+M
Sbjct: 298 LEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNM 357

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG+L                               D+A  IF  +  K  + WN+II
Sbjct: 358 YAKCGRL-------------------------------DLAHLIFGRISIKDAICWNSII 386

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
             + Q  + +EA+ LF +M   G+K D VT    LSAC+ + AL  G  IH F+ K  F 
Sbjct: 387 TSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFE 446

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++   +AL++MYAKCG +  A  VF+ M E+N + + +II     HG   D+++ F  M
Sbjct: 447 SDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNM 506

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
           +  G+ PD ITFL ILS+C H G V++G +YF  M+  + +  +++HY+CM DL GR+G 
Sbjct: 507 LEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGH 566

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L+EA ++I SMP      VWG L  ACR+HGNV + E A+  LL+L+P++SG Y+LL ++
Sbjct: 567 LDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHV 626

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
             D+  W    K++ +M+ERGV+K PGCS IEVN     F   D SHPE  QIY
Sbjct: 627 LADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSHPESPQIY 680



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 202/414 (48%), Gaps = 33/414 (7%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PD +T+P + K C  L    LG  I   +L++GFD+DM+V +++I ++   G +  A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
              FD+   ++ V WN +ING+V+ G    AI+LF+DM     +PD VT   ++S     
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             +  GR++H  +  SGL     + N L+ +Y K  +L  A ++FD M    +V    MI
Sbjct: 125 AMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMI 184

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + GF+D                               +A  LF+EM + GIKPD++
Sbjct: 185 GGYVQNGFMD-------------------------------DASMLFNEMISAGIKPDSI 213

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L + ++  +L     IH +I +    L+V L +AL+D+Y KC +   A ++F+  
Sbjct: 214 TFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLS 273

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            + + + YTA+I G  L+G   DA+  F  ++   ++P+ +TF  IL AC     +  GR
Sbjct: 274 TKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGR 333

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +    +     L  K    S ++++  + G L+ A  LI       D + W ++
Sbjct: 334 ELHGYIIK-NELEEKCPVGSAIMNMYAKCGRLDLA-HLIFGRISIKDAICWNSI 385



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD    I   +   ++  WN  I  F + GK  EA+ L++QM   G  + D  T      
Sbjct: 364 LDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEG-VKYDCVTVSAALS 422

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA++     G EI G ++K  F+ D++  +A+I+++  CG L +A  VF+    +N V+
Sbjct: 423 ACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVA 482

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REIHWYI 206
           WNS+I  +   G+  +++ LF +M  E ++PD +T + ++S+C     +  G R      
Sbjct: 483 WNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMT 542

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFL 262
            E G+   +     + D++ + G L+ A E+  SM      S    ++G    +      
Sbjct: 543 EEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELA 602

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           ++A +   DL  K    +  +      A + +    + H M+  G++
Sbjct: 603 EVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQ 649



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 4/183 (2%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M   G+ PD  T    +  C+ L  +  G  I   I +  F+L++ + ++L+ +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I  A + F +M +++ + +  +I G    G++  AI  F +M+     PD +TF  +LS 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 423 CCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
            C   +V+ GR+     + S     P + +    V   GR   L +A +L   MP   D+
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQ--LGDARKLFDMMPQ-IDL 177

Query: 482 VVW 484
           VVW
Sbjct: 178 VVW 180


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/460 (41%), Positives = 275/460 (59%), Gaps = 2/460 (0%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGM 186
           +L  +  V D S    L ++NS+I    +S  P  +   +  +      + PD  T   +
Sbjct: 58  NLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFL 117

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           V   AQL     G  +H    + G      + + L+ MY + G L++   +F S+    +
Sbjct: 118 VRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDL 177

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           V  T M+   AK G +  ARK+FD +  K  + WNA+I GYVQ  +S+EAL+LF+ MQ  
Sbjct: 178 VCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQRE 237

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G+K + V+ V  LSACS LGALD G W H +IE+    + + LGTAL+DMYAKCGN+ KA
Sbjct: 238 GVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKA 297

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           ++VF  M E+N  T+++ IGGLA++G     +  FS M    + P+EITF+ +L  C   
Sbjct: 298 MEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVV 357

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV+EGRK+F  MS ++ + P+L+HY CMVDL GR+G L+EA   I SMP+   V  WGA
Sbjct: 358 GLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGA 417

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  AC+++ N+ +GE A+ K++EL+ ++ G YVLL+N+Y DS  W+    VR+ M  +GV
Sbjct: 418 LLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGV 477

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            K PGCS IEV G ++EF V DKSHP   +I   L +++R
Sbjct: 478 RKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISR 517



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 196/416 (47%), Gaps = 78/416 (18%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + I GL++      + +A  A++   NL Y  ++L N QNP  F++N  IR   ++    
Sbjct: 32  LLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPH 91

Query: 61  EAVDLYKQMLRNGG-TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +   Y ++L + G   PDN+T+  L +  A L     G  + G  +K GF+ D +V + 
Sbjct: 92  RSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSG 151

Query: 120 VIHVFV------SC-------------------------GDLGLACNVFDESCVRNLVSW 148
           +I+++       +C                         GD+G A  +FD+   ++ ++W
Sbjct: 152 LIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAW 211

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+V+ G  REA+ LF  MQ E V+ +EV+M+ ++SAC+ L  L+ GR  H YI  
Sbjct: 212 NAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIER 271

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + L +T+ L  AL+DMY KCG +  A E+F  M                           
Sbjct: 272 NKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGM--------------------------- 304

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                EK V  W++ IGG       ++ L LF  M+   ++P+ +T V  L  CS +G +
Sbjct: 305 ----KEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLV 360

Query: 329 DDGIWIHRFIEKENFNLNVVLGT--------ALVDMYAKCGNIAKALQVFHEMPER 376
           ++G        K   +++ V G          +VD+Y + G++ +AL   + MP R
Sbjct: 361 EEG-------RKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVR 409


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 299/546 (54%), Gaps = 32/546 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+     NP   S N  I G+    ++ EA+++++  L+      D  +       C+++
Sbjct: 327 KVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRS-LQKSYLDFDEISLSGALTACSAI 385

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G ++ G  +K G D ++ V N ++ ++  CG L  AC +FD+  +++ VSWN++I
Sbjct: 386 KGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAII 445

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
               ++    E + LF  M    +EPD+ T   +V ACA  + LN G E+H  + +SG+ 
Sbjct: 446 AAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMG 505

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L   + +A++DMY KCG L  AE                               KI + L
Sbjct: 506 LDWFVGSAIIDMYCKCGMLVEAE-------------------------------KIHERL 534

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            E+  V WN+II G+   K+ + AL+ F  M   G+ PD  T    L  C+ L  ++ G 
Sbjct: 535 EERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGK 594

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  I K   + +V + + +VDMY+KCGN+  +  +F + P+R+ +T++A+I   A HG
Sbjct: 595 QIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHG 654

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              DAI  F EM    + P+   F+ +L AC H G VD+G  YF +M S + L P+++HY
Sbjct: 655 LGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHY 714

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           SCMVDLLGRSG + EA +LI SMP  AD V+W  L   CRL GNV + E+AA  LL+LDP
Sbjct: 715 SCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDP 774

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           QDS  YVLL+N+Y  + MW E  K+R  M+   ++K PGCS I+V   ++ F+V DK+HP
Sbjct: 775 QDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHP 834

Query: 573 ELEQIY 578
             E+IY
Sbjct: 835 RSEEIY 840



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/553 (24%), Positives = 254/553 (45%), Gaps = 77/553 (13%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N+++   +  ++   +  SWN  +  +L+ G  R++++++ +M R    + D  T+ ++ 
Sbjct: 119 NMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKM-RLLEIQHDYATFAVVL 177

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C  +    LG ++    +++GFD D+    A++ ++ +C  L  A N+F E   RN V
Sbjct: 178 KACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSV 237

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
            W+++I G+VR+    E ++L++ M  E +   + T      +CA L    LG ++H Y 
Sbjct: 238 CWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYA 297

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            ++       +  A +DMY KC ++  A ++F++  N T  S   +IVGYA+   +  A 
Sbjct: 298 LKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEAL 357

Query: 267 KIFDDLPEKY---------------------------------------VVPWNAIIGGY 287
           +IF  L + Y                                       +   N I+  Y
Sbjct: 358 EIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMY 417

Query: 288 VQAKRSKEALALFHEMQ-ATGIKPDAVTTVH----------------------------- 317
            +     EA  +F +M+    +  +A+   H                             
Sbjct: 418 AKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFG 477

Query: 318 -CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             + AC+   AL+ G+ +H  + K    L+  +G+A++DMY KCG + +A ++   + ER
Sbjct: 478 SVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEER 537

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
            ++++ +II G +   +  +A+SYFS M+ VG++PD  T+  +L  C +   V+ G++  
Sbjct: 538 TTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIH 597

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            Q+  + +L   +   S +VD+  + G ++++  +    P   D V W A+  A   HG 
Sbjct: 598 GQILKL-QLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHG- 654

Query: 497 VSIGERAAMKLLE 509
             +GE  A+KL E
Sbjct: 655 --LGED-AIKLFE 664



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 195/442 (44%), Gaps = 64/442 (14%)

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
            T+  +F+ C++L     G +    +   GF   ++V N ++  +  C +L  A NVFD+
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 140 SCVRNLVSWNSLINGF-------------------------------VRSGFPREAIRLF 168
              R+++SWN++I G+                               +++GF R++I +F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
             M+L  ++ D  T   ++ AC  +ED  LG ++H    + G    V    AL+DMY  C
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
            KL                               D A  IF ++PE+  V W+A+I GYV
Sbjct: 219 KKL-------------------------------DHAFNIFCEMPERNSVCWSAVIAGYV 247

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           +  R  E L L+  M   G+     T      +C+ L A + G  +H +  K NF  + +
Sbjct: 248 RNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNI 307

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +GTA +DMYAKC  +  A +VF+  P     ++ A+I G A   + L+A+  F  +    
Sbjct: 308 VGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSY 367

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           L  DEI+  G L+AC       EG +    ++    L   +   + ++D+  + G L EA
Sbjct: 368 LDFDEISLSGALTACSAIKGYLEGIQLHG-LAVKCGLDFNICVANTILDMYAKCGALMEA 426

Query: 469 EQLIRSMPMAADVVVWGALFFA 490
             +   M +  D V W A+  A
Sbjct: 427 CLIFDDMEI-KDAVSWNAIIAA 447



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 142/263 (53%), Gaps = 2/263 (0%)

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           P  AI      Q+   +  ++T   +   C+ L+ +N G++ H  I+ +G   TV ++N 
Sbjct: 21  PPYAIHSISSNQMNPTK--KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNC 78

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+  Y KC  L  A  +FD M  + V+S  TMI GYA  G ++ A+ +FD +PE+ VV W
Sbjct: 79  LLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSW 138

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N+++  Y+Q    ++++ +F +M+   I+ D  T    L AC+ +     G+ +H    +
Sbjct: 139 NSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQ 198

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F+ +VV GTALVDMY+ C  +  A  +F EMPERNS+ ++A+I G   + +  + +  
Sbjct: 199 MGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKL 258

Query: 401 FSEMIGVGLMPDEITFLGILSAC 423
           +  M+  G+   + TF     +C
Sbjct: 259 YKVMLDEGMGVSQATFASAFRSC 281


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 305/529 (57%), Gaps = 12/529 (2%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   IL+++ +P+SFSW  AIR F + G+ +EA+ LY QM R G   P  F      +  
Sbjct: 76  YVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLC-PSTFAVSSALRAY 134

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           A    +  G  I     K GF   +YV  A++ ++   GD+  A  VFDE   +N+VSWN
Sbjct: 135 ARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWN 194

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           S+++G ++SG   EA R+F  +     + D ++   M+S  A++ D++    +   + E 
Sbjct: 195 SILSGHLKSGNLLEAQRVFDQIS----KKDVISWNSMISGYAKIGDMDRACVLFQQMPEK 250

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +      NAL+  YV CG ++SA   FD+M  +  VS  TMI GY+K G +D A K+F
Sbjct: 251 NYSSW----NALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLF 306

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQLGA 327
           D + +K ++ +NA+I  + Q  + ++AL LF EM      I+PD +T    +SACSQLG 
Sbjct: 307 DQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGD 366

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L    WI  ++      ++  L TAL+D+YAKCG++ KA ++FH + +++ + Y+A+I G
Sbjct: 367 LRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISG 426

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
             ++GK  DAI  F  M+   + P+  TF G+L+AC H GLV EG ++F+ M     L P
Sbjct: 427 CGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKD-HGLVP 485

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
              HY+ MVDLLGR+G L++A +LI+SMPM     VWGAL  AC +H NV +GE AA   
Sbjct: 486 STDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQHC 545

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
             L+   +  Y LLAN+Y  +  W++ G++RK+ +E+ + K  GCS  E
Sbjct: 546 FNLETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSWTE 594



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 145/300 (48%), Gaps = 29/300 (9%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S NL    ++   +   +  SWN  I G+ + G M  A  L++QM       P+     
Sbjct: 202 KSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQM-------PE----- 249

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLG--FDVDMYVHNAV-----IHVFVSCGDLGLACNV 136
              K  +S      GY   G +      FD  M   N+V     I  +  CGD+  A  +
Sbjct: 250 ---KNYSSWNALISGYVNCGDIKSAWRFFDA-MPERNSVSWITMIAGYSKCGDVDSASKL 305

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGMVSACAQLE 194
           FD+   ++L+++N++I+ F ++  PR+A+ LF +M      ++PD++T+  +VSAC+QL 
Sbjct: 306 FDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLG 365

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           DL     I  Y+++ G  +   L  AL+D+Y KCG ++ A E+F  +  K VV+ + MI 
Sbjct: 366 DLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMIS 425

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS----KEALALFHEMQATGIKP 310
           G    G +  A K+FD + +  + P  A   G + A       KE    F  M+  G+ P
Sbjct: 426 GCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKDHGLVP 485


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  370 bits (950), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 181/441 (41%), Positives = 275/441 (62%), Gaps = 4/441 (0%)

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL---EDLNLGRE 201
           +VSW + I  + +SG   +A   F  M+   +EP+ +T I ++SACA       ++ G  
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115

Query: 202 IHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           IH ++ + GL +  V +  AL+DMY KCG++ESA   FD M  + +VS  TMI GY + G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
             + A ++FD LP K  + W A+IGG+V+    +EAL  F EMQ +G+ PD VT +  ++
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ LG L  G+W+HR +  ++F  NV +  +L+DMY++CG I  A QVF  MP+R  ++
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           + +II G A++G A +A+SYF+ M   G  PD +++ G L AC H GL+ EG + F  M 
Sbjct: 296 WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMK 355

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            + R+ P+++HY C+VDL  R+G LEEA  ++++MPM  + V+ G+L  ACR  GN+ + 
Sbjct: 356 RVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLA 415

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           E     L+ELD      YVLL+N+Y     W+ A KVR+ M+ERG++K PG SSIE++  
Sbjct: 416 ENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSS 475

Query: 561 LYEFIVRDKSHPELEQIYDCL 581
           +++F+  DKSH E + IY  L
Sbjct: 476 IHKFVSGDKSHEEKDHIYAAL 496



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 175/366 (47%), Gaps = 68/366 (18%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF---LGYEI 101
           SW  +I  + ++G + +A   + QM R     P++ T+  L   CA    R     G  I
Sbjct: 58  SWTTSIADYCKSGHLVKAASKFVQM-REAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116

Query: 102 FGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG- 159
             HV KLG D+ D+ V  A+I ++  CG +  A   FD+  VRNLVSWN++I+G++R+G 
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176

Query: 160 ------------------------------FPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
                                         +  EA+  FR+MQL  V PD VT+I +++A
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAA 236

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           CA L  L LG  +H  +        V ++N+L+DMY +CG ++ A ++FD M  +T+VS 
Sbjct: 237 CANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSW 296

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            ++IVG+A  G  D                               EAL+ F+ MQ  G K
Sbjct: 297 NSIIVGFAVNGLAD-------------------------------EALSYFNSMQEEGFK 325

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQ 368
           PD V+    L ACS  G + +G+ I   +++    L  +     LVD+Y++ G + +AL 
Sbjct: 326 PDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALN 385

Query: 369 VFHEMP 374
           V   MP
Sbjct: 386 VLKNMP 391



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 2/204 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SW   I GF++     EA++ +++M +  G  PD  T   +   CA+LG   LG  +
Sbjct: 191 NAISWTALIGGFVKKDYHEEALECFREM-QLSGVAPDYVTVIAVIAACANLGTLGLGLWV 249

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+   F  ++ V N++I ++  CG + LA  VFD    R LVSWNS+I GF  +G  
Sbjct: 250 HRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLA 309

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT-VPLANA 220
            EA+  F  MQ E  +PD V+  G + AC+    +  G  I  ++      L  +     
Sbjct: 310 DEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGC 369

Query: 221 LMDMYVKCGKLESAEEIFDSMVNK 244
           L+D+Y + G+LE A  +  +M  K
Sbjct: 370 LVDLYSRAGRLEEALNVLKNMPMK 393



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 41/222 (18%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++   +      SWN  I GF   G   EA+  +  M +  G +PD  +Y     
Sbjct: 278 IDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSM-QEEGFKPDGVSYTGALM 336

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+  GL   G  IF H+ ++                                 +  +  
Sbjct: 337 ACSHAGLIGEGLRIFEHMKRV------------------------------RRILPRIEH 366

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           +  L++ + R+G   EA+ + ++M +   +P+EV +  +++AC    ++ L   +  Y+ 
Sbjct: 367 YGCLVDLYSRAGRLEEALNVLKNMPM---KPNEVILGSLLAACRTQGNIGLAENVMNYLI 423

Query: 208 E---SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           E    G +  V L+N    +Y   GK + A ++   M  + +
Sbjct: 424 ELDSGGDSNYVLLSN----IYAAVGKWDGANKVRRRMKERGI 461


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 315/581 (54%), Gaps = 39/581 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   + N    S+   I GF++ G  REA++++K M R+ G  P++ T   +  
Sbjct: 135 IDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDM-RSCGVVPNDLTLVNVIS 193

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ LG       + G V+K+     + V   ++H +  C  +  A  +FDE   RNLV+
Sbjct: 194 ACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVT 253

Query: 148 WNSLINGFVRSGFP-------------------------------REAIRLFRDMQLERV 176
           WN ++NG+ ++G                                 REA+ ++R M     
Sbjct: 254 WNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGH 313

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P+EV ++ +VSAC +   +  G ++H  + + G      +   ++  Y  CG ++ A  
Sbjct: 314 GPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACL 373

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
            F+  V   + S   +  G+ K G +D A K FD +  + V  W+ +I GY Q++  K A
Sbjct: 374 QFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMA 433

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L LFH+M A GIKP+ VT V   SA + LG L +G   H ++  E+   N  L  AL+DM
Sbjct: 434 LELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDM 493

Query: 357 YAKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           YAKCG+I  ALQ F+++ +  S    + AII GLA HG A   +  FS+M    + P+ I
Sbjct: 494 YAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPI 553

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           TF+G+LSACCH GLV+ G++ F  M S + + P +KHY CM+D+LGR+GLLEEAE++IRS
Sbjct: 554 TFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRS 613

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MPM AD+V+WG L  ACR HGNV+IGERAA  L  L P   G  VLL+N+Y ++  WEE 
Sbjct: 614 MPMEADIVIWGTLLAACRTHGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEV 673

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEF-----IVRDKS 570
             VR +M+ + +++ PG S       L        ++RDK+
Sbjct: 674 SFVRSVMQGQTMDREPGYSGFVAGSDLDRMSGSSGVIRDKA 714



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 226/478 (47%), Gaps = 66/478 (13%)

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL--------------G 131
            K C+SL     G +I   + KLG   + ++ N++I+++  CGD+               
Sbjct: 60  LKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDS 119

Query: 132 LACNVFDESCVRN-----------------LVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           ++CN+     VRN                  VS+ ++I GFV++GF REA+ +F+DM+  
Sbjct: 120 VSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSC 179

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            V P+++T++ ++SAC+ L ++   R +H  + +  +   V ++  LM  Y  C  +  A
Sbjct: 180 GVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREA 239

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
             +FD M  + +V+   M+ GYAK G +D AR++FD + +K V+ W  +I GY+Q  R +
Sbjct: 240 RRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLR 299

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           EAL ++  M  TG  P+ V  V+ +SAC +  A+ DG  +H  + K  F+    + T ++
Sbjct: 300 EALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTII 359

Query: 355 DMYAKC-------------------------------GNIAKALQVFHEMPERNSLTYTA 383
             YA C                               G +  AL+ F +M  R+  +++ 
Sbjct: 360 YFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWST 419

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSI 442
           +I G A       A+  F +M+  G+ P+E+T + + SA    G + EG+     M S  
Sbjct: 420 MISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSES 479

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGNVSI 499
              +  L+  + ++D+  + G +  A Q    +    + V  W A+      HG+ S+
Sbjct: 480 IPFNDNLR--AALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASM 535



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 157/304 (51%), Gaps = 32/304 (10%)

Query: 161 PREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           P+  I +F + +  +   D E+ ++  + +C+ L  ++ GR+IH  I + GL     + N
Sbjct: 33  PQHFIHIFTNARNHQNHHDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQN 92

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L++MY KCG +++A+ +FD       VSC  M+ GY + G +D ARK+FD +P K  V 
Sbjct: 93  SLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVS 152

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           +  +I G+VQ    +EAL +F +M++ G+ P+ +T V+ +SACS LG + +   +H  + 
Sbjct: 153 YTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVV 212

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA---------- 389
           K      V++ T L+  Y  C  + +A ++F EMPERN +T+  ++ G A          
Sbjct: 213 KMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARE 272

Query: 390 ---------------------LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
                                  G+  +A+  +  M+  G  P+E+  + ++SAC  G  
Sbjct: 273 LFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTA 332

Query: 429 VDEG 432
           + +G
Sbjct: 333 IVDG 336



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 43/209 (20%)

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL-------- 367
           V  L +CS L  +  G  IH  I K   + N  +  +L++MYAKCG+I  A         
Sbjct: 57  VSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFAT 116

Query: 368 -----------------------QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
                                  ++F  MP +  ++YT +I G   +G   +A+  F +M
Sbjct: 117 LDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDM 176

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-----LSPKLKHYSCMVDLL 459
              G++P+++T + ++SAC H G V   R     +  +F      +S  L H  C+    
Sbjct: 177 RSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLC--- 233

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALF 488
             SG + EA +L   MP   ++V W  + 
Sbjct: 234 --SG-VREARRLFDEMP-ERNLVTWNVML 258


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 330/577 (57%), Gaps = 35/577 (6%)

Query: 39  QNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           +NP  N  SW  AI G+++ G   EA+ L+ ++L +   +P+  T+  + + CA+LG   
Sbjct: 143 RNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESE-VKPNKVTFTSVVRACANLGDFG 201

Query: 97  LGYEIFGHVLKLGFDVDMYVHN-------------------------------AVIHVFV 125
           LG  + G ++K G++ D+ V N                               A++ ++V
Sbjct: 202 LGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYV 261

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
              +LG A  +FDE   RN VSW+++I  + +SG+P E++RLF  M  E  +P+      
Sbjct: 262 EMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSS 321

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++SA A +E L  G  IH ++++ G    V ++++L+DMY KCG+ +    +FD+++ K 
Sbjct: 322 ILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKN 381

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           +VS   M+ GY+  G ++ A+ +F+ +P +  V W+AII G++  ++  E   +F+EM  
Sbjct: 382 MVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMIL 441

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G  P+  T    L AC+   +LD G  +H  I K     +  +GTAL DMYAK G+I  
Sbjct: 442 LGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIES 501

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACC 424
           + +VF+ MP++N +++TA+I GLA  G A ++++ F EM     + P+E+ FL +L AC 
Sbjct: 502 SKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACS 561

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLVD+G  YF  M +++ L PK +H++C+VD+L R+G L EAE+ I SMP   +   W
Sbjct: 562 HSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAW 621

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL   C+ + N  + ER A KL E+  ++   YVLL+N+Y  +  W +  KVRK+M+ +
Sbjct: 622 AALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAK 681

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           G++K+ GCS +E+   ++ F   D +H +  +IY+ L
Sbjct: 682 GLKKSGGCSWVEIRDRVHSFYSEDGAHSQSAEIYEIL 718



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 236/500 (47%), Gaps = 79/500 (15%)

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFK--------VCASLGLRFLGYEIFGHVLKLGFDVD- 113
           V L K +   G  R  +  +  LFK        +   L + +L Y       ++  D D 
Sbjct: 25  VSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDG 84

Query: 114 --MYVHNAVIHVFVSCGDLGLACNVFDE-------------------------------S 140
             + VHN +I   V  G+L  A  +FDE                               +
Sbjct: 85  FDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERN 144

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +N+VSW + I+G+V++GF  EA++LF  +    V+P++VT   +V ACA L D  LG 
Sbjct: 145 PFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGM 204

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            +   I ++G    + ++N+L+ + ++ G++  A E+FD M  K VVS T ++  Y +  
Sbjct: 205 SVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMD 264

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            L  AR+IFD++P++  V W+A+I  Y Q+   +E+L LF  M   G KP+       LS
Sbjct: 265 ELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILS 324

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           A + + AL  G+ IH  + K  F  +V + ++L+DMY KCG       +F  + E+N ++
Sbjct: 325 ALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVS 384

Query: 381 YTAIIGGLALHGKALDA-------------------------------ISYFSEMIGVGL 409
           + A++GG +L+G   +A                                  F+EMI +G 
Sbjct: 385 WNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGE 444

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEE 467
           +P++ TF  +L AC     +D+G+    +   I +L  +   Y  + + D+  +SG +E 
Sbjct: 445 IPNKSTFSSLLCACASTASLDKGKNLHGK---IVKLGIQCDTYVGTALTDMYAKSGDIES 501

Query: 468 AEQLIRSMPMAADVVVWGAL 487
           ++++   MP   + V W A+
Sbjct: 502 SKKVFNRMPKKNE-VSWTAM 520


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/485 (38%), Positives = 294/485 (60%), Gaps = 9/485 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG---LACNVFDESCVRNLVSWNSLINGFV 156
           +I  HV+KL      ++   V  +  SC +LG    A  +F +    N+ ++N++I  + 
Sbjct: 28  KIHAHVVKLSLSQSNFL---VTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYA 84

Query: 157 RSGFPREAIRLFRDM---QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
            +     AI +F  M       V PD+ T   ++ +C  +    LG ++H  + + G   
Sbjct: 85  HNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADF 144

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
                NAL+DMY K G L +A ++F+ M ++ V+S  ++I GY K G ++ AR++FDD+P
Sbjct: 145 HCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMP 204

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + +V W  +I GY +     +AL +F EMQ  GI+PD ++ +  L AC+QLGAL+ G W
Sbjct: 205 VRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKW 264

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH + +K  F     +  AL++MYAKCG I +A  +F ++ E++ ++++ +IGGLA HGK
Sbjct: 265 IHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGK 324

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +AI  F EM  V + P+EITFLG+L AC H GL DEG KYF  MS+ + + P+++HY 
Sbjct: 325 GYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYG 384

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           C++DLLGRSG L +A   I  MP+  D  +W +L  +CR+H N+ I   A  +L+EL+P+
Sbjct: 385 CLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPE 444

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           +SG YVLLANMY +   WE+   +RK++  + ++KTPG SSIEVN ++ EF+  D S P 
Sbjct: 445 ESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSSDDSKPF 504

Query: 574 LEQIY 578
            ++++
Sbjct: 505 SQEVF 509



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 191/400 (47%), Gaps = 66/400 (16%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR--PDNFTYPL 84
           ++ Y T +   + +PN F++N  IR +        A+ ++ QML +      PD FT+P 
Sbjct: 57  HVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPF 116

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           + K C  +    LG ++ G V K G D      NA+I ++   GDL  AC VF+E   R+
Sbjct: 117 VIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRD 176

Query: 145 LVSWNSLINGFVR--------------------------SGFPR-----EAIRLFRDMQL 173
           ++SWNSLI G+V+                          +G+ R     +A+ +FR+MQ+
Sbjct: 177 VISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQM 236

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
             +EPDE+++I ++ ACAQL  L +G+ IH Y  ++G      + NAL++MY KCG ++ 
Sbjct: 237 VGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDE 296

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A  +FD +V K V+S +TMI G A  G                         GY      
Sbjct: 297 AWNLFDQLVEKDVISWSTMIGGLANHG------------------------KGY------ 326

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTA 352
            EA+ LF EM    + P+ +T +  L ACS  G  D+G+ +        +    +     
Sbjct: 327 -EAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGC 385

Query: 353 LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           L+D+  + G + +AL    +MP + +S  + +++    +H
Sbjct: 386 LIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIH 425


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/576 (35%), Positives = 311/576 (53%), Gaps = 42/576 (7%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL---GLRFLGYEIFG 103
           N  I  +        AV +++ +L +G  RPD++++  L      L    +R    ++  
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCA-QLQC 183

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSC----------------------------------GD 129
            VLK G    + V NA++ +++ C                                  GD
Sbjct: 184 SVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGD 243

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +G A +VF+E  V+  V WN++I+G+V SG   EA  LFR M LERV  DE T   ++SA
Sbjct: 244 VGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSA 303

Query: 190 CAQLEDLNLGREIHWYISESGLTL----TVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           CA       G+ +H  I+           +P+ NAL+ +Y KCG +  A  IFD+M +K 
Sbjct: 304 CANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKD 363

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VVS  T++ GY +   LD A ++F+++P K  + W  ++ GYV    S++AL LF+ M+A
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRA 423

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
             +KP   T    +SAC +LG+L  G  +H  + +  F  +   G AL+ MYA+CG + +
Sbjct: 424 EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A  +F  MP  +S+++ A+I  L  HG   +A+  F  M+  G+ PD I+FL +L+AC H
Sbjct: 484 ANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH 543

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            GLVDEG +YF  M   F + P   HY+ ++DLLGR+G + EA  LI++MP      +W 
Sbjct: 544 SGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWE 603

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
           A+   CR  G++ +G  AA +L ++ PQ  G Y+LL+N Y  +  W +A +VRK+M +RG
Sbjct: 604 AILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRG 663

Query: 546 VEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           V+K PGCS IE    ++ F+V D  HPE  ++Y  L
Sbjct: 664 VKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFL 699



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 207/436 (47%), Gaps = 51/436 (11%)

Query: 118 NAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE- 174
            +++  + + G L  A + FD      R+ V  N++I+ + R+     A+ +FR +    
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGR--EIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            + PD+ +   ++SA   L ++++    ++   + +SG    + ++NAL+ +Y+KC  LE
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 233 S---AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
           +   A ++ D M +K  ++ TTM+VGY + G +  AR +F+++  K+ V WNA+I GYV 
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK--ENFNLNV 347
           +    EA  LF  M    +  D  T    LSAC+  G    G  +H  I +   NF    
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEA 331

Query: 348 VL--GTALVDMYAKCGNIA-------------------------------KALQVFHEMP 374
            L    ALV +Y+KCGNIA                               KA++VF EMP
Sbjct: 332 ALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            +N L++  ++ G    G + DA+  F+ M    + P + T+ G +SAC   G +  G++
Sbjct: 392 YKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQ 451

Query: 435 YFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
               +  + F  S      + ++ +  R G ++EA  +   MP   D V W A+  A   
Sbjct: 452 LHGHLVQLGFEGSNSAG--NALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQ 508

Query: 494 HGNVSIGERAAMKLLE 509
           HG+     R A++L +
Sbjct: 509 HGH----GREALELFD 520



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 177/387 (45%), Gaps = 75/387 (19%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I G++ +G + EA +L+++M+       D FT+  +   CA+ G    G  + G +
Sbjct: 262 WNAMISGYVHSGMVVEAFELFRRMVLER-VPLDEFTFTSVLSACANAGFFAHGKSVHGQI 320

Query: 106 LKLG----FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS--- 158
            +L      +  + V+NA++ ++  CG++ +A  +FD    +++VSWN++++G+V S   
Sbjct: 321 TRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCL 380

Query: 159 ----------------------------GFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
                                       GF  +A++LF  M+ E V+P + T  G +SAC
Sbjct: 381 DKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISAC 440

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            +L  L  G+++H ++ + G   +    NAL+ MY +CG ++ A  +F  M N   VS  
Sbjct: 441 GELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVS-- 498

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                        WNA+I    Q    +EAL LF  M A GI P
Sbjct: 499 -----------------------------WNAMISALGQHGHGREALELFDRMVAEGIYP 529

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKA 366
           D ++ +  L+AC+  G +D+G    ++ E    +  ++ G    T L+D+  + G I +A
Sbjct: 530 DRISFLTVLTACNHSGLVDEGF---QYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 367 LQVFHEMP-ERNSLTYTAIIGGLALHG 392
             +   MP E     + AI+ G    G
Sbjct: 587 RDLIKTMPFEPTPSIWEAILSGCRTSG 613



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 2/219 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ES  LD   ++   +   N  SW V + G++  G   +A+ L+ +M R    +P ++TY 
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM-RAEDVKPCDYTYA 434

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                C  LG    G ++ GH+++LGF+      NA+I ++  CG +  A  +F      
Sbjct: 435 GAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNI 494

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           + VSWN++I+   + G  REA+ LF  M  E + PD ++ + +++AC     ++ G +  
Sbjct: 495 DSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYF 554

Query: 204 WYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             +    G+         L+D+  + G++  A ++  +M
Sbjct: 555 ESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 142/337 (42%), Gaps = 54/337 (16%)

Query: 200 REIHWYISESGLTLTVP---LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           R +H  +  S L    P   L   L+ +Y   G L +A  +F +  +   V+ T+++  Y
Sbjct: 41  RCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLFRA--DPCPVAATSLVAAY 98

Query: 257 AKFGFLDIARKIFDDLPE--KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAV 313
           A  G L  A   FD +P+  +  V  NA+I  Y +A  +  A+A+F  + A+G ++PD  
Sbjct: 99  AAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDY 158

Query: 314 TTVHCLSACSQLG--ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA---KALQ 368
           +    LSA   L   ++     +   + K      + +  ALV +Y KC  +     A +
Sbjct: 159 SFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARK 218

Query: 369 VFHEMPERNSLTYT-------------------------------AIIGGLALHGKALDA 397
           V  EMP++++LT+T                               A+I G    G  ++A
Sbjct: 219 VLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEA 278

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK------LKH 451
              F  M+   +  DE TF  +LSAC + G    G+    Q   I RL P       L  
Sbjct: 279 FELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQ---ITRLQPNFVPEAALPV 335

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            + +V L  + G +  A ++  +M  + DVV W  + 
Sbjct: 336 NNALVTLYSKCGNIAVARRIFDNM-KSKDVVSWNTIL 371


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 329/595 (55%), Gaps = 36/595 (6%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
             A S+  ++D   +    +   +S SW   I G+   G+  +A+ +   M++ G   P 
Sbjct: 87  LSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG-IEPT 145

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
            FT   +    A+      G ++   ++KLG   ++ V N++++++  CGD  +A  VFD
Sbjct: 146 QFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFD 205

Query: 139 ESCVRNL-------------------------------VSWNSLINGFVRSGFPREAIRL 167
              VR++                               V+WNS+I+GF + G+   A+ +
Sbjct: 206 RMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDI 265

Query: 168 FRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           F  M  + +  PD  T+  ++SACA LE L +G++IH +I  +G  ++  + NAL+ MY 
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325

Query: 227 KCGKLESAEEIFDSMVNK--TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           +CG +E+A  + +    K   +   T ++ GY K G ++ A+ IF  L ++ VV W A+I
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMI 385

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q     EA+ LF  M   G +P++ T    LS  S L +L  G  IH    K    
Sbjct: 386 VGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEI 445

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSE 403
            +V +  AL+ MYAK GNI  A + F  +  ER+++++T++I  LA HG A +A+  F  
Sbjct: 446 YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+  GL PD IT++G+ SAC H GLV++GR+YF  M  + ++ P L HY+CMVDL GR+G
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           LL+EA++ I  MP+  DVV WG+L  ACR+H N+ +G+ AA +LL L+P++SG Y  LAN
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALAN 625

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +Y     WEEA K+RK M++  V+K  G S IEV   ++ F V D +HPE  +IY
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 207/453 (45%), Gaps = 68/453 (15%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N V+  +   GD+   C  FD+   R+ VSW ++I G+   G   +AIR+  DM  E +E
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P + T+  ++++ A    +  G+++H +I + GL   V ++N+L++MY KCG    A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD MV + + S   MI  + + G +D+A   F+ + E+ +V WN++I G+ Q      AL
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL 263

Query: 298 ALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
            +F +M + + + PD  T    LSAC+ L  L  G  IH  I    F+++ ++  AL+ M
Sbjct: 264 DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323

Query: 357 YAKCGNIA---------------------------------KALQVFHEMPERNSLTYTA 383
           Y++CG +                                  +A  +F  + +R+ + +TA
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-----------CHGGLVDEG 432
           +I G   HG   +AI+ F  M+G G  P+  T   +LS              HG  V  G
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443

Query: 433 RKYFAQMSS--------------------IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
             Y   +S+                    + R       ++ M+  L + G  EEA +L 
Sbjct: 444 EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 473 RSMPMAA---DVVVWGALFFACRLHGNVSIGER 502
            +M M     D + +  +F AC   G V+ G +
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ 536



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 168/354 (47%), Gaps = 39/354 (11%)

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H  + +SGL  +V L N LM++Y K G    A ++FD M  +T  S  T++  Y+K G 
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +D   + FD LP++  V W  +I GY    +  +A+ +  +M   GI+P   T  + L++
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN------------------- 362
            +    ++ G  +H FI K     NV +  +L++MYAKCG+                   
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 363 ---IAKALQV---------FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
              IA  +QV         F +M ER+ +T+ ++I G    G  L A+  FS+M+   L+
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 411 -PDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
            PD  T   +LSAC +   +  G++  + + ++ F +S  +   + ++ +  R G +E A
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETA 333

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
            +LI       D+ + G   F   L G + +G+    K + +  +D  +    A
Sbjct: 334 RRLIEQRG-TKDLKIEG---FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 295/522 (56%), Gaps = 33/522 (6%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVF-VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +I   ++  G   D ++    +  + VS  ++  A  VF      +  SW ++I GFV +
Sbjct: 45  KIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEA 104

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
             P +A+  +  M+   VE ++ T + ++ A         GR +H  + + G    V   
Sbjct: 105 KNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTR 164

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----------------------- 255
           NAL+ MY+KCG +  A  +FD M N  VV+  TMI G                       
Sbjct: 165 NALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVG 224

Query: 256 --------YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                   Y+K G +DIAR +FD +PE+ VV W ++I  YVQ  R+ EAL LF EM   G
Sbjct: 225 SWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAG 284

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +  D++     LSAC+Q+GALD G WIH ++++     +V L TALVDMYAKCG I  A 
Sbjct: 285 VSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAF 344

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VF+ MP +N  ++ A++ GLA+HG    A+  F +M   G+ P++ITF+ +LSAC H G
Sbjct: 345 GVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIG 404

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            V+EG K F QM   F ++PK++HY CMVD+L R GL+ EA+++IR+MP+  +VV+WGAL
Sbjct: 405 SVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGAL 464

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             AC++HG  ++GE     + +L  +D G YVLL+N++   + W E  K RKMM++ GVE
Sbjct: 465 LNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVE 524

Query: 548 KT-PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           K  PG SSIE++ ++++F   D+ H +  ++   + +L  H 
Sbjct: 525 KKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHL 566



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 224/512 (43%), Gaps = 113/512 (22%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ITG I   F  ++ +   A+S ++N+DY   +   +  P+S+SW   IRGF+E     
Sbjct: 50  LIITGQIKDTFIATKTVESYAVS-ARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPE 108

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL---GYEIFGHVLKLGFDVDMYVH 117
           +A++ Y  ++R  G   + FT+  + K   + GLR     G  + G ++K+GF  D++  
Sbjct: 109 KALEFYG-LMRQRGVELNKFTFLFVLK---AYGLRPSYQEGRIVHGKLVKVGFCYDVFTR 164

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV- 176
           NA+IH+++ CG +  A  +FDE    N+V+WN++I G    G    A RLF +M    V 
Sbjct: 165 NALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVG 224

Query: 177 --------------------------EPDEVTMIGMVS---------------------- 188
                                     E D V+   M+S                      
Sbjct: 225 SWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAG 284

Query: 189 -------------ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
                        ACAQ+  L++GR IH Y+  S L   V L  AL+DMY KCG +++A 
Sbjct: 285 VSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAF 344

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +F++M                               P K +  WNA++ G         
Sbjct: 345 GVFNTM-------------------------------PRKNLCSWNAMLSGLAIHGHGFA 373

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALV 354
           AL LF +M++TG+ P+ +T V  LSACS +G++++G      ++KE N    V     +V
Sbjct: 374 ALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMV 433

Query: 355 DMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK---ALDAISYFSEMIGVGLM 410
           D+  + G I +A ++   MP E N + + A++    +HG      D + Y  +++     
Sbjct: 434 DILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVS---- 489

Query: 411 PD---EITFLGILSACCHGGLVDEGRKYFAQM 439
            D    +    I +A      V++ RK   QM
Sbjct: 490 EDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQM 521


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 319/551 (57%), Gaps = 38/551 (6%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P +FS+NVAIR F  + +   ++ L+  MLR+   RPD++T P L    A      L   
Sbjct: 116 PTAFSYNVAIR-FFASSRPHTSLRLFLHMLRSA-IRPDSYTLPFLLLAAARYPAPSLARA 173

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
               + K+G +   +  +++I ++    D G A  VFD    R++VSWN+++  + R G 
Sbjct: 174 AHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGM 233

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             E  R+FRDM  E  V P+ VT+  +++AC    DL LGR +  +   + + +   + +
Sbjct: 234 NGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGS 293

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+ MY KCG++  A                               R++FD + +K +V 
Sbjct: 294 ALLGMYEKCGEIAEA-------------------------------RRVFDTIIDKDIVA 322

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA+I GY Q   S EA++LFH M+  G++PD +T    LSACS +GAL+ G  +  +  
Sbjct: 323 WNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYAS 382

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +     NV +GTALVDMYAKCG++ KA++VF +MP +N  ++ A+I GLA +G+  +AI 
Sbjct: 383 RRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQ 442

Query: 400 YFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
           +F  M    GL PD+ITF+G+LSAC H GLV +G+++F  ++  F++ PK++HYSCMVDL
Sbjct: 443 HFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDL 502

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           L RSG LEEA   I  +P   D V+ GAL  ACR   NV IGER   ++++L+P +S  Y
Sbjct: 503 LARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNY 562

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH---PELE 575
           V+ + +Y  S+  +++ K+R +M ERGV KTPGCS +EV+G + EF   D+      ++ 
Sbjct: 563 VVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAGDEPQHGADDMY 622

Query: 576 QIYDCLVQLTR 586
           Q+ D LV   R
Sbjct: 623 QVLDLLVDEMR 633



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 33/346 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SWN  ++ +   G   E   +++ M++ G   P+  T  ++   C   
Sbjct: 208 KVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQ 267

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG  +         ++D  V +A++ ++  CG++  A  VFD    +++V+WN++I
Sbjct: 268 GDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMI 327

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ ++G   EAI LF  M++  + PD++T+ G++SAC+ +  L LG E+  Y S  GL 
Sbjct: 328 TGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLY 387

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +  AL+DMY KCG L+ A E+F  M  K V S                        
Sbjct: 388 SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVAS------------------------ 423

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDG 331
                  WNA+I G     R  EA+  F  M+   G+KPD +T +  LSAC   G + DG
Sbjct: 424 -------WNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDG 476

Query: 332 I-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             W +    +      +   + +VD+ A+ G++ +A     ++P++
Sbjct: 477 KRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDK 522


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 319/551 (57%), Gaps = 38/551 (6%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P +FS+NVAIR F  + +   ++ L+  MLR+   RPD++T P L    A      L   
Sbjct: 116 PTAFSYNVAIR-FFASSRPHTSLRLFLHMLRSA-IRPDSYTLPFLLLAAARYPAPSLARA 173

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
               + K+G +   +  +++I ++    D G A  VFD    R++VSWN+++  + R G 
Sbjct: 174 AHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGM 233

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             E  R+FRDM  E  V P+ VT+  +++AC    DL LGR +  +   + + +   + +
Sbjct: 234 NGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGS 293

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+ MY KCG++  A                               R++FD + +K +V 
Sbjct: 294 ALLGMYEKCGEIAEA-------------------------------RRVFDTIIDKDIVA 322

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA+I GY Q   S EA++LFH M+  G++PD +T    LSACS +GAL+ G  +  +  
Sbjct: 323 WNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYAS 382

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +     NV +GTALVDMYAKCG++ KA++VF +MP +N  ++ A+I GLA +G+  +AI 
Sbjct: 383 RRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQ 442

Query: 400 YFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
           +F  M    GL PD+ITF+G+LSAC H GLV +G+++F  ++  F++ PK++HYSCMVDL
Sbjct: 443 HFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDL 502

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           L RSG LEEA   I  +P   D V+ GAL  ACR   NV IGER   ++++L+P +S  Y
Sbjct: 503 LARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNY 562

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH---PELE 575
           V+ + +Y  S+  +++ K+R +M ERGV KTPGCS +EV+G + EF   D+      ++ 
Sbjct: 563 VVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAGDEPQHGADDMY 622

Query: 576 QIYDCLVQLTR 586
           Q+ D LV   R
Sbjct: 623 QVLDLLVDEMR 633



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 33/346 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SWN  ++ +   G   E   +++ M++ G   P+  T  ++   C   
Sbjct: 208 KVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQ 267

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG  +         ++D  V +A++ ++  CG++  A  VFD    +++V+WN++I
Sbjct: 268 GDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMI 327

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ ++G   EAI LF  M++  + PD++T+ G++SAC+ +  L LG E+  Y S  GL 
Sbjct: 328 TGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLY 387

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +  AL+DMY KCG L+ A E+F  M  K V S                        
Sbjct: 388 SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVAS------------------------ 423

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDG 331
                  WNA+I G     R  EA+  F  M+   G+KPD +T +  LSAC   G + DG
Sbjct: 424 -------WNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDG 476

Query: 332 I-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             W +    +      +   + +VD+ A+ G++ +A     ++P++
Sbjct: 477 KRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDK 522


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 322/565 (56%), Gaps = 40/565 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T ++ +    SRLI FCA SE  +++Y   +   +     + WN  I+G+   G   
Sbjct: 28  MITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKF 87

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ +Y++M R G + PD+FT+P + KVC+ + L   G  +   ++K GF++D+Y  + +
Sbjct: 88  GALFMYEEMQRKGFS-PDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCL 146

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           ++++VSCGDL     VF+     N+V+W SLI GFV +  P+EA+RLF+DM+ E VEP+E
Sbjct: 147 LNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNE 206

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLT-------LTVPLANALMDMYVKCGKLES 233
           +TM   ++A A+  D++ G+ +H  + + G           V LA A+MDMY KC     
Sbjct: 207 ITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKC----- 261

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
                                     G L  AR +FD +P++ +V WN++I  Y Q  R 
Sbjct: 262 --------------------------GKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRG 295

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            EAL LF +M+  G  P+  T +  +SAC+ +G    G  +H    + +F+  V +GTAL
Sbjct: 296 AEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTAL 355

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPD 412
           +DMYAK G+   AL++F ++ +++ + +T +I GLA+ GK  +A++ F  M     + PD
Sbjct: 356 MDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPD 415

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           +IT++ +L AC H GLV+EG+K F  M+ ++ + P ++HY CM+DLL R+G  +EAE+L+
Sbjct: 416 QITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELL 475

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
             MP   +  +  ++   C ++GNV +  R    ++EL+   SG+YVLL+N++  +  W+
Sbjct: 476 MKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQ 535

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEV 557
           E    R M++ + + KT G S +E+
Sbjct: 536 EMKLARDMLKHKNIGKTLGNSFVEI 560


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 308/552 (55%), Gaps = 42/552 (7%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL 65
           +I  G      I    +S S ++ Y T I   + NP++F +N+ ++ F +  +  +   L
Sbjct: 32  IIHKGLEQDHFIISHFLSISTSVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSL 91

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF-GHVLKLGFDVDMYVHNAVIHVF 124
           + +M ++     D +TYPLL KVC++  LR    EI  G  ++ G   D+YV +++I  +
Sbjct: 92  FYRMKQSEYALSDKYTYPLLIKVCSN-ELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFY 150

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             C ++  A  VFDE   RN+VSW +++ G+   G                         
Sbjct: 151 GKCKEILSARKVFDEIPERNVVSWTAMVAGYASVG------------------------- 185

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
                     DL   + +   + E  L    P  NA++    K G L  A ++FD MV +
Sbjct: 186 ----------DLENAKRVFERMPERNL----PSWNAMISGLGKAGDLSGARKVFDEMVER 231

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VVS T MI GYAK G +  AR +FD+ PEK VV W+A+I GY + ++  EA+ +F EM 
Sbjct: 232 NVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMV 291

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAKCGNI 363
           +  +KPD    V  +SACSQLG  D   W+  ++ + + +     +  AL+DM+AKCGN+
Sbjct: 292 SMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNM 351

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA+++F +MP R+ +   ++I GL++HG+ ++A+  F+ M+  GL+PD + F  IL+AC
Sbjct: 352 EKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTAC 411

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
             GGL+++G  +F  M + + + P   HY+CMVDLL R+G L  A  L++SMP+      
Sbjct: 412 SRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACA 471

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL  AC+LHG+V + E  A +LLEL+P+ +G YVLL+N+Y  +N W +   VR  M+E
Sbjct: 472 WGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKE 531

Query: 544 RGVEKTPGCSSI 555
           RG+ K PGCS I
Sbjct: 532 RGIRKIPGCSYI 543


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 315/582 (54%), Gaps = 36/582 (6%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I++GF  +  +    +S   + + +D   K+   +Q+ +  SW   + G+ + G  + A
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + L  QM +  G +PD+ T   +    A +    +G  I G+  + GF+  + V NA++ 
Sbjct: 231 LQLVLQM-QEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLD 289

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG   +A  VF     + +VSWN++I+G  ++G   EA   F  M  E   P  VT
Sbjct: 290 MYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVT 349

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           M+G++ ACA L DL  G  +H  + +  L   V + N+L+ MY KC ++           
Sbjct: 350 MMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRV----------- 398

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                               DIA  IF++L EK  V WNA+I GY Q    KEAL LF  
Sbjct: 399 --------------------DIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCM 437

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQ+ GIK D  T V  ++A +         WIH    +   + NV + TALVDMYAKCG 
Sbjct: 438 MQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGA 497

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I  A ++F  M ER+ +T+ A+I G   HG   + +  F+EM    + P++ITFL ++SA
Sbjct: 498 IKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISA 557

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H G V+EG   F  M   + L P + HYS MVDLLGR+G L++A   I+ MP+   + 
Sbjct: 558 CSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGIS 617

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           V GA+  AC++H NV +GE+AA KL +LDP + G +VLLAN+Y  ++MW++  KVR  ME
Sbjct: 618 VLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAME 677

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           ++G+ KTPGCS +E+   ++ F     +HPE ++IY  L  L
Sbjct: 678 DKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETL 719



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 34/399 (8%)

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           Y+I   ++K GF  +      VI +F   G    A  VF+   ++  V ++ ++ G+ ++
Sbjct: 64  YQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKN 123

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
               +A+  F  M  + V         ++  C +  DL  GREIH  I  +G    + + 
Sbjct: 124 SSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVM 183

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
            A+M +Y KC ++++A ++F+ M +K +VS TT++ GYA+ G                  
Sbjct: 184 TAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNG------------------ 225

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                         +K AL L  +MQ  G KPD+VT V  L A + + AL  G  IH + 
Sbjct: 226 -------------HAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYA 272

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            +  F   V +  AL+DMY KCG+   A  VF  M  +  +++  +I G A +G++ +A 
Sbjct: 273 FRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAF 332

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
           + F +M+  G +P  +T +G+L AC + G ++ G  +  ++    +L   +   + ++ +
Sbjct: 333 ATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGW-FVHKLLDKLKLDSNVSVMNSLISM 391

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
             +   ++ A  +  ++      V W A+      +G V
Sbjct: 392 YSKCKRVDIAASIFNNLEKTN--VTWNAMILGYAQNGCV 428


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 307/578 (53%), Gaps = 34/578 (5%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL++  F  S L+     +++  +    ++   +   N  SW   I G +  G  +EA+
Sbjct: 145 TGLVNSVFVGSALLDM--YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEAL 202

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             + +M R+     D++T+ +  K CA  G    G EI    +K GFDV  +V N +  +
Sbjct: 203 VYFSEMWRSR-VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATM 261

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG L     +F++  +R++VSW ++I   V+ G    A++ F  M+   V P+E T 
Sbjct: 262 YNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTF 321

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++S CA L  +  G ++H  I   GL  ++ + N++M MY KCG+L S+         
Sbjct: 322 AAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS-------- 373

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                                   IF ++  + +V W+ II GY Q     EA  L   M
Sbjct: 374 -----------------------VIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWM 410

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +  G KP        LSAC  +  L+ G  +H ++         ++ +AL++MY KCG+I
Sbjct: 411 RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSI 470

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A ++F      + +++TA+I G A HG + + I  F ++  VGL PD +TF+G+LSAC
Sbjct: 471 EEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSAC 530

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLVD G  YF  MS  +++SP  +HY CM+DLL R+G L +AE +I +MP   D VV
Sbjct: 531 SHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVV 590

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L  ACR+HG+V  G R A ++L+L+P  +G ++ LAN+Y     W EA  +RK+M+ 
Sbjct: 591 WSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKS 650

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +GV K PG S I+V  L++ F+  D+SHP+ E IY+ L
Sbjct: 651 KGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNML 688



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 185/390 (47%), Gaps = 38/390 (9%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
            D+   N  +   V  G LG A  +FD+   ++ +SW +LI+G+V +    EA+ LF++M
Sbjct: 47  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 172 QLE---RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
           ++E   R++P  +++     AC    D+N G  +H Y  ++GL  +V + +AL+DMY K 
Sbjct: 107 RVESGLRIDPFILSLAH--KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKN 164

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           GK+     +F  M  + VVS T                               AII G V
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWT-------------------------------AIITGLV 193

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           +A  +KEAL  F EM  + ++ D+ T    L AC+  GAL+ G  IH    K+ F+++  
Sbjct: 194 RAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF 253

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +   L  MY KCG +   L +F +M  R+ +++T II  L   G+   A+  F  M    
Sbjct: 254 VANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           + P+E TF  ++S C +   ++ G +  A +  +  L+  L   + ++ +  + G L  +
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHL-GLAASLSVENSIMTMYAKCGQLTSS 372

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVS 498
             +   M    D+V W  +       G+VS
Sbjct: 373 SVIFHEMTR-RDIVSWSTIIAGYXQGGHVS 401



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 5/256 (1%)

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTV 316
           K G L  AR++FD + +K  + W  +I GYV A  S EAL LF  M+  +G++ D     
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
               AC     ++ G  +H +  K     +V +G+AL+DMY K G I +  +VFHEMP R
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N +++TAII GL   G   +A+ YFSEM    +  D  TF   L AC   G ++ GR+  
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 437 AQ-MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           AQ M   F +S  + +   +  +  + G LE    L   M M  DVV W  +       G
Sbjct: 241 AQAMKKGFDVSSFVAN--TLATMYNKCGKLEYGLTLFEKMSM-RDVVSWTTIITTLVQMG 297

Query: 496 NVSIGERAAMKLLELD 511
                 +A +++ E D
Sbjct: 298 QEECAVQAFIRMRESD 313


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/550 (35%), Positives = 305/550 (55%), Gaps = 33/550 (6%)

Query: 34  ILFNVQN-PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++FN  +  N   WN+ +  F +   + ++ +L+ QM +  G RP+ FTYP + + C   
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM-QAAGIRPNQFTYPCILRTCTCT 358

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               LG +I    +K GF+ DMYV   +I ++   G L  A  V +    +++VSW S+I
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+V+    ++A+  F++MQ   + PD + +   +S CA +  +  G +IH  I  SG +
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS 478

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V + NAL+++Y +CG++    E F S                            F+++
Sbjct: 479 GDVSIWNALVNLYARCGRIR---EAFSS----------------------------FEEI 507

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K  + WN ++ G+ Q+   +EAL +F  M  +G+K +  T V  LSA + L  +  G 
Sbjct: 508 EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGK 567

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  + K   +    +G AL+ +Y KCG+   A   F EM ERN +++  II   + HG
Sbjct: 568 QIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           + L+A+  F +M   G+ P+++TF+G+L+AC H GLV+EG  YF  MS  + + P+  HY
Sbjct: 628 RGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHY 687

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +C++D+ GR+G L+ A++ I  MP+AAD +VW  L  AC++H N+ +GE AA  LLEL+P
Sbjct: 688 ACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEP 747

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
            DS  YVLL+N Y  +  W    +VRKMM +RGV K PG S IEV  +++ F V D+ HP
Sbjct: 748 HDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHP 807

Query: 573 ELEQIYDCLV 582
             EQIY+ L 
Sbjct: 808 LAEQIYNFLA 817



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   ++ SW   + G+ + G   EA+ LY+QM R  G  P  +    +   C   
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHR-AGVVPTPYVLSSVLSSCTKA 156

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L   G  I     K GF  +++V NAVI +++ CG   LA  VF +   R+ V++N+LI
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLI 216

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G  + G    A+ +F +MQ   + PD VT+  +++ACA L DL  G ++H Y+ ++G++
Sbjct: 217 SGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS 276

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  +L+D+YVKCG +E+A  IF+S     VV    M+V + +    D+A+      
Sbjct: 277 SDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN--DLAK------ 328

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                  +  LF +MQA GI+P+  T    L  C+    +D G 
Sbjct: 329 -----------------------SFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH    K  F  ++ +   L+DMY+K G + KA +V   + E++ +++T++I G   H 
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              DA++ F EM   G+ PD I     +S C     + +G +  A++  +   S  +  +
Sbjct: 426 CCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI-YVSGYSGDVSIW 484

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + +V+L  R G + EA      +    D + W  L
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEH-KDEITWNGL 518



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 201/444 (45%), Gaps = 49/444 (11%)

Query: 52  GFLETGKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRF-LGYEIFGHVLKLG 109
           GFL      + + L+    R +GG  P +F   L  + C   G R+ +  EI    +  G
Sbjct: 15  GFLAHEDPAKVLSLFADKARQHGGLGPLDFACAL--RACRGNGRRWQVVPEIHAKAVTRG 72

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
                 V N +I ++   G +  A  VF+E   R+ VSW ++++G+ ++G   EA+ L+R
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            M    V P    +  ++S+C + E    GR IH    + G    + + NA++ +Y++CG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
               AE +F  M ++  V+  T+I G+A+ G                             
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCG----------------------------- 223

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
               + AL +F EMQ +G+ PD VT    L+AC+ LG L  G  +H ++ K   + + ++
Sbjct: 224 --HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             +L+D+Y KCG++  AL +F+     N + +  ++           +   F +M   G+
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM------VDLLGRSG 463
            P++ T+  IL  C     +D G +       I  LS K    S M      +D+  + G
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQ-------IHSLSVKTGFESDMYVSGVLIDMYSKYG 394

Query: 464 LLEEAEQLIRSMPMAADVVVWGAL 487
            LE+A +++  M    DVV W ++
Sbjct: 395 WLEKARRVL-EMLKEKDVVSWTSM 417



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 175/366 (47%), Gaps = 34/366 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   ++L  ++  +  SW   I G+++    ++A+  +K+M +  G  PDN        
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCGIWPDNIGLASAIS 454

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G +I   +   G+  D+ + NA+++++  CG +  A + F+E   ++ ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN L++GF +SG   EA+++F  M    V+ +  T +  +SA A L ++  G++IH  + 
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++G +    + NAL+ +Y KCG  E A+  F  M  +  VS                   
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS------------------- 615

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WN II    Q  R  EAL LF +M+  GIKP+ VT +  L+ACS +G 
Sbjct: 616 ------------WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 328 LDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G+   + +  E            ++D++ + G + +A +   EMP   +++ +  ++
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 386 GGLALH 391
               +H
Sbjct: 724 SACKVH 729



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 6/237 (2%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+K G +  AR++F++L  +  V W A++ GY Q    +EAL L+ +M   G+ P     
Sbjct: 87  YSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVL 146

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              LS+C++      G  IH    K  F   + +G A++ +Y +CG+   A +VF +MP 
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+++T+  +I G A  G    A+  F EM   GL PD +T   +L+AC   G + +G + 
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 436 FAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
               S +F+  +S        ++DL  + G +E A  +  S     +VV+W  +  A
Sbjct: 267 H---SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR-TNVVLWNLMLVA 319



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 26/188 (13%)

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           ++G  L+D+Y+K G +  A +VF E+  R+++++ A++ G A +G   +A+  + +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--------MVDLL 459
           G++P       +LS+C    L  +GR   AQ           KH  C        ++ L 
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ---------GYKHGFCSEIFVGNAVITLY 188

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLLELDPQD 514
            R G    AE++   MP   D V +  L      H     GE A      M+   L P  
Sbjct: 189 LRCGSFRLAERVFCDMPH-RDTVTFNTLISG---HAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 515 SGIYVLLA 522
             I  LLA
Sbjct: 245 VTISSLLA 252


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 319/551 (57%), Gaps = 38/551 (6%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P +FS+NVAIR F  + +   ++ L+  MLR+   RPD++T P L    A      L   
Sbjct: 116 PTAFSYNVAIR-FFASSRPHTSLRLFLHMLRSA-IRPDSYTLPFLLLAAARYPAPSLARA 173

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
               + K+G +   +  +++I ++    D G A  VFD    R++VSWN+++  + R G 
Sbjct: 174 AHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGM 233

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             E  R+FRDM  E  V P+ VT+  +++AC    DL LGR +  +   + + +   + +
Sbjct: 234 NGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGS 293

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+ MY KCG++  A                               R++FD + +K +V 
Sbjct: 294 ALLGMYEKCGEIAEA-------------------------------RRVFDTIIDKDIVA 322

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA+I GY Q   S EA++LFH M+  G++PD +T    LSACS +GAL+ G  +  +  
Sbjct: 323 WNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYAS 382

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +     NV +GTALVDMYAKCG++ KA++VF +MP +N  ++ A+I GLA +G+  +AI 
Sbjct: 383 RRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQ 442

Query: 400 YFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
           +F  M    GL PD+ITF+G+LSAC H GLV +G+++F  ++  F++ PK++HYSCMVDL
Sbjct: 443 HFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDL 502

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           L RSG LEEA   I  +P   D V+ GAL  ACR   NV IGER   ++++L+P +S  Y
Sbjct: 503 LARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNY 562

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH---PELE 575
           V+ + +Y  S+  +++ K+R +M ERGV KTPGCS +EV+G + EF   D+      ++ 
Sbjct: 563 VVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAGDEPQHGADDMY 622

Query: 576 QIYDCLVQLTR 586
           Q+ D LV   R
Sbjct: 623 QVLDLLVDEMR 633



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 33/346 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SWN  ++ +   G   E   +++ M++ G   P+  T  ++   C   
Sbjct: 208 KVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQ 267

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG  +         ++D  V +A++ ++  CG++  A  VFD    +++V+WN++I
Sbjct: 268 GDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMI 327

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ ++G   EAI LF  M++  + PD++T+ G++SAC+ +  L LG E+  Y S  GL 
Sbjct: 328 TGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLY 387

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +  AL+DMY KCG L+ A E+F  M  K V S                        
Sbjct: 388 SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVAS------------------------ 423

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDG 331
                  WNA+I G     R  EA+  F  M+   G+KPD +T +  LSAC   G + DG
Sbjct: 424 -------WNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDG 476

Query: 332 I-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             W +    +      +   + +VD+ A+ G++ +A     ++P++
Sbjct: 477 KRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDK 522


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/512 (38%), Positives = 294/512 (57%), Gaps = 63/512 (12%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           DLG A ++FD    R+L+ WN++I  +V + F  + I LF ++  E + PD  T+  ++ 
Sbjct: 62  DLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIK 120

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
            CA+L  +  G++IH    + G    V +  +L++MY KCG+++ A ++FD M++K VV 
Sbjct: 121 GCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVL 180

Query: 249 CTTMIVGYAKFGFLDIA-------------------------------RKIFDDLPEKYV 277
             ++I GYA+ G +DIA                               RK+FD +P + +
Sbjct: 181 WNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNL 240

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQ-------------------------------AT 306
           V WNA+I GY+++     AL LF++M                                  
Sbjct: 241 VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKL 300

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G +P   T V  LSA S L  L  G WIH ++EK  F L+ +LGT+L++MYAKCG I  A
Sbjct: 301 GSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 360

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           L VF  + ++    +TAII GL +HG A  A++ F EM   GL P+ I F+G+L+AC H 
Sbjct: 361 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLVD+GR+YF  M + +++ P L+HY C+VD+L R+G LEEA+  I +MP++ + V+W +
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L    R HG + IGE AA +++E+ P+  G Y+LL+NMY  S MWE+   VR+MM +RG 
Sbjct: 481 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 540

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            K PGCSS+E  G L+EFIV D SHP+ ++IY
Sbjct: 541 RKDPGCSSVEHKGTLHEFIVGDISHPQTKEIY 572


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/550 (35%), Positives = 305/550 (55%), Gaps = 33/550 (6%)

Query: 34  ILFNVQN-PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++FN  +  N   WN+ +  F +   + ++ +L+ QM +  G RP+ FTYP + + C   
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM-QAAGIRPNQFTYPCILRTCTCT 358

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               LG +I    +K GF+ DMYV   +I ++   G L  A  V +    +++VSW S+I
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+V+    ++A+  F++MQ   + PD + +   +S CA +  +  G +IH  I  SG +
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS 478

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V + NAL+++Y +CG++    E F S                            F+++
Sbjct: 479 GDVSIWNALVNLYARCGRIR---EAFSS----------------------------FEEI 507

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K  + WN ++ G+ Q+   +EAL +F  M  +G+K +  T V  LSA + L  +  G 
Sbjct: 508 EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGK 567

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  + K   +    +G AL+ +Y KCG+   A   F EM ERN +++  II   + HG
Sbjct: 568 QIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           + L+A+  F +M   G+ P+++TF+G+L+AC H GLV+EG  YF  MS  + + P+  HY
Sbjct: 628 RGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHY 687

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +C++D+ GR+G L+ A++ I  MP+AAD +VW  L  AC++H N+ +GE AA  LLEL+P
Sbjct: 688 ACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEP 747

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
            DS  YVLL+N Y  +  W    +VRKMM +RGV K PG S IEV  +++ F V D+ HP
Sbjct: 748 HDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHP 807

Query: 573 ELEQIYDCLV 582
             EQIY+ L 
Sbjct: 808 LAEQIYNFLA 817



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 216/446 (48%), Gaps = 34/446 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SW   + G+ + G   EA+ LY+QM R  G  P  +    +   C    L   G  I
Sbjct: 107 DNVSWVAMLSGYAQNGLGEEALGLYRQMHR-AGVVPTPYVLSSVLSSCTKAELFAQGRLI 165

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
                K GF  +++V NAVI +++ CG   LA  VF +   R+ V++N+LI+G  + G  
Sbjct: 166 HAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHG 225

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A+ +F +MQ   + PD VT+  +++ACA L DL  G ++H Y+ ++G++    +  +L
Sbjct: 226 EHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSL 285

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +D+YVKCG +E+A  IF+S     VV    M+V + +    D+A+               
Sbjct: 286 LDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN--DLAK--------------- 328

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                         +  LF +MQA GI+P+  T    L  C+    +D G  IH    K 
Sbjct: 329 --------------SFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKT 374

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  ++ +   L+DMY+K G + KA +V   + E++ +++T++I G   H    DA++ F
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAF 434

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM   G+ PD I     +S C     + +G +  A++  +   S  +  ++ +V+L  R
Sbjct: 435 KEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI-YVSGYSGDVSIWNALVNLYAR 493

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGAL 487
            G + EA      +    D + W  L
Sbjct: 494 CGRIREAFSSFEEIEH-KDEITWNGL 518



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 200/438 (45%), Gaps = 37/438 (8%)

Query: 52  GFLETGKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRF-LGYEIFGHVLKLG 109
           GFL      + + L+    R +GG  P +F   L  + C   G R+ +  EI    +  G
Sbjct: 15  GFLAHEDPAKVLSLFADKARQHGGLGPLDFACAL--RACRGNGRRWQVVPEIHAKAVTRG 72

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
                 V N +I ++   G +  A  VF+E   R+ VSW ++++G+ ++G   EA+ L+R
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            M    V P    +  ++S+C + E    GR IH    + G    + + NA++ +Y++CG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
               AE +F  M ++  V+  T+I G+A+ G                             
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCG----------------------------- 223

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
               + AL +F EMQ +G+ PD VT    L+AC+ LG L  G  +H ++ K   + + ++
Sbjct: 224 --HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             +L+D+Y KCG++  AL +F+     N + +  ++           +   F +M   G+
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            P++ T+  IL  C     +D G +  + +S        +     ++D+  + G LE+A 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 470 QLIRSMPMAADVVVWGAL 487
           +++  M    DVV W ++
Sbjct: 401 RVL-EMLKEKDVVSWTSM 417



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 175/366 (47%), Gaps = 34/366 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   ++L  ++  +  SW   I G+++    ++A+  +K+M +  G  PDN        
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCGIWPDNIGLASAIS 454

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G +I   +   G+  D+ + NA+++++  CG +  A + F+E   ++ ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN L++GF +SG   EA+++F  M    V+ +  T +  +SA A L ++  G++IH  + 
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++G +    + NAL+ +Y KCG  E A+  F  M  +  VS                   
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS------------------- 615

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WN II    Q  R  EAL LF +M+  GIKP+ VT +  L+ACS +G 
Sbjct: 616 ------------WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 328 LDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G+   + +  E            ++D++ + G + +A +   EMP   +++ +  ++
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 386 GGLALH 391
               +H
Sbjct: 724 SACKVH 729



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 6/237 (2%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+K G +  AR++F++L  +  V W A++ GY Q    +EAL L+ +M   G+ P     
Sbjct: 87  YSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVL 146

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              LS+C++      G  IH    K  F   + +G A++ +Y +CG+   A +VF +MP 
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+++T+  +I G A  G    A+  F EM   GL PD +T   +L+AC   G + +G + 
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 436 FAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
               S +F+  +S        ++DL  + G +E A  +  S     +VV+W  +  A
Sbjct: 267 H---SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR-TNVVLWNLMLVA 319



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 26/188 (13%)

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           ++G  L+D+Y+K G +  A +VF E+  R+++++ A++ G A +G   +A+  + +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--------MVDLL 459
           G++P       +LS+C    L  +GR   AQ           KH  C        ++ L 
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ---------GYKHGFCSEIFVGNAVITLY 188

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLLELDPQD 514
            R G    AE++   MP   D V +  L      H     GE A      M+   L P  
Sbjct: 189 LRCGSFRLAERVFCDMPH-RDTVTFNTLISG---HAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 515 SGIYVLLA 522
             I  LLA
Sbjct: 245 VTISSLLA 252


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/519 (38%), Positives = 305/519 (58%), Gaps = 24/519 (4%)

Query: 83  PLLFKVCASLG-LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV------SCGD-LGLAC 134
           P  F+ C S+  LR    +    +++LG       HN +I   +      S  D L  A 
Sbjct: 26  PFHFEKCQSMSQLR----QYHSQIIRLGLSS----HNHLIPPLINFCARASTSDALTYAL 77

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGF-PREAIRLFRDMQLER-VEPDEVTMIGMVSACAQ 192
            +FD     +   +N++I GF+ S   P  +I L     L+  V P+  T   ++ AC +
Sbjct: 78  KLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK 137

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           ++    G +IH ++ + G        N+L+ MYV    LE A  +F ++ +   VS T++
Sbjct: 138 IQH---GMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSL 194

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP-D 311
           I GY+K+G +D A  IF  +P+K    WNA++  YVQ  R  EA ALF  M+A      D
Sbjct: 195 ISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLD 254

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
                  LSAC+ LGALD G WIH +I++    L+  L TA+VDMY KCG + KALQVFH
Sbjct: 255 KFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFH 314

Query: 372 EMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
            +P   R   ++  +IGGLA+HG    AI  F EM    + PD+ITFL +L+AC H GLV
Sbjct: 315 SLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLV 374

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           +EGR YF+ M  ++ + P+++H+ CMVDLLGR+G++ EA +LI  MP++ DV V G L  
Sbjct: 375 EEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLG 434

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           AC+ H N+ +GE    +++EL+P +SG YVLLAN+Y ++  WE+A KVRK+M++RGV+K 
Sbjct: 435 ACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKA 494

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           PG S IE+ G ++EFI  +++HP+ ++++  + ++  H 
Sbjct: 495 PGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHL 533



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 183/419 (43%), Gaps = 69/419 (16%)

Query: 5   GLISHGFAPSRLIAFCA-ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM--RE 61
           GL SH      LI FCA  S S  L Y  K+  ++  P++F +N  I+GFL +  +    
Sbjct: 49  GLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNS 108

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
            + LY  ML+N    P+NFT+P L   C  +     G +I  H+ K GF       N++I
Sbjct: 109 ILLLYSHMLQNS-VLPNNFTFPSLLIACRKIQ---HGMQIHAHLFKFGFGAHSVCLNSLI 164

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM---------- 171
           H++V+   L  A  VF      + VSW SLI+G+ + G   EA  +F+ M          
Sbjct: 165 HMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNA 224

Query: 172 ------QLERVEP----------------DEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                 Q  R                   D+     M+SAC  L  L+ G+ IH YI  +
Sbjct: 225 MMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRN 284

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G+ L   L  A++DMY KCG LE A ++F S+                            
Sbjct: 285 GIELDSKLTTAIVDMYCKCGCLEKALQVFHSL---------------------------- 316

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
             LP +++  WN +IGG       + A+ LF EM+   + PD +T ++ L+AC+  G ++
Sbjct: 317 -PLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVE 375

Query: 330 DGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           +G  +    I        +     +VD+  + G + +A ++  EMP    +T    + G
Sbjct: 376 EGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLG 434



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 129/279 (46%), Gaps = 15/279 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS SWN  +  +++T +  EA  L+ +M        D F    +   C  LG    G  I
Sbjct: 218 NSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWI 277

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSG 159
             ++ + G ++D  +  A++ ++  CG L  A  VF    +  R + SWN +I G    G
Sbjct: 278 HEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHG 337

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY-ISESGLTLTVPLA 218
               AI+LF++M+ +RV PD++T + +++ACA    +  GR    Y I   G+   +   
Sbjct: 338 NGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHF 397

Query: 219 NALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFL----DIARKIFDDLP 273
             ++D+  + G +  A ++ D M V+  V    T++    K   +    +I R++ +  P
Sbjct: 398 GCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEP 457

Query: 274 E---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
               +YV+  N     Y  A + ++A  +   M   G+K
Sbjct: 458 NNSGRYVLLANL----YANAGKWEDAAKVRKLMDDRGVK 492


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 211/572 (36%), Positives = 322/572 (56%), Gaps = 16/572 (2%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFS-------WNVAIRGFLET 56
           TG I +    +R++   + S    L    + +F+  + +S+S       WN  I+ F   
Sbjct: 12  TGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVIKSFSHG 71

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
              R A+ L+  M+ N     D F+  L+ K C+ LG    G ++ G + K G   D+++
Sbjct: 72  VDPRNALLLFCLMIENS-VSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFL 130

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N +I +++ CG LG A  VFD    R+ VS+NS+I+G+V+ G    A  LF  M  E+ 
Sbjct: 131 QNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREK- 189

Query: 177 EPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
             + ++   M+S   Q ED +N+  ++   + E  L       N+L+D YVK  ++E A+
Sbjct: 190 -KNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISW----NSLIDGYVKHRRIEDAK 244

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD M  K VV+  TMI GYAK GF+  A+K+FD++P++ VV +N+++ GYVQ K   E
Sbjct: 245 SLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAE 304

Query: 296 ALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           A+ +F++M+  + + PD  T V  LSA +QLG L   + IH +I    F L   LG AL+
Sbjct: 305 AIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALI 364

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           D Y+KCG+I K+++VF E+  ++   + A+IGGLA+HG    A     ++    + PD+I
Sbjct: 365 DTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDI 424

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           TF+G+L+AC H GLV EG   F  M    ++ PKL+HY CMVD+L RSG +E A+ LI  
Sbjct: 425 TFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEE 484

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MP+  + V+W     AC  H     GE  A  L      +   +VLL+NMY    MW+E 
Sbjct: 485 MPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEV 544

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
            +VR  M+ER + K PGCS IE++G ++EF V
Sbjct: 545 RRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 576


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 308/554 (55%), Gaps = 32/554 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +   + +  N   WNV +  +     + E+  ++ QM +  G  P+ FTYP + + C+SL
Sbjct: 428 EFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQM-QMEGIEPNQFTYPSILRTCSSL 486

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               LG +I   VLK GF  ++YV + +I ++   G L  A  +F     +++VSW ++I
Sbjct: 487 RAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMI 546

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ +     EA+ LF++MQ + +  D +     +SACA ++ LN G++IH     SG +
Sbjct: 547 AGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYS 606

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + + NAL+ +Y +CGK+  A   FD + +K  +S                        
Sbjct: 607 DDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS------------------------ 642

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  WN++I G+ Q+   +EAL+LF +M   G + ++ T    +SA + +  +  G 
Sbjct: 643 -------WNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGK 695

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  I K   +    +   L+ +YAKCGNI  A + F EMPE+N +++ A++ G + HG
Sbjct: 696 QIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHG 755

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
               A+S F +M  +G++P+ +TF+G+LSAC H GLVDEG KYF  M  +  L PK +HY
Sbjct: 756 HGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHY 815

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +C+VDLLGRSGLL  A + +  MP+  D +V   L  AC +H N+ IGE AA  LLEL+P
Sbjct: 816 ACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEP 875

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           +DS  YVLL+NMY  +  W    + R+MM++RGV+K PG S IEVN  ++ F   D+ HP
Sbjct: 876 KDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHP 935

Query: 573 ELEQIYDCLVQLTR 586
            +++IY+ L  L  
Sbjct: 936 NVDKIYEYLRDLNE 949



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 246/484 (50%), Gaps = 37/484 (7%)

Query: 7   ISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I+HG+  S  +    I    ++  L+   K+   +Q  +S SW   + G  ++G   EAV
Sbjct: 197 ITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAV 256

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+ QM    G  P  + +  +   C  +    +G ++ G VLK GF ++ YV NA++ +
Sbjct: 257 LLFCQM-HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTL 315

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +   G+   A  VF+    R+ VS+NSLI+G  + G+  +A+ LF+ M L+ ++PD VT+
Sbjct: 316 YSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTV 375

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++SAC+ +  L +G++ H Y  ++G++  + L  AL+D+YVKC  +++A E F S   
Sbjct: 376 ASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTET 435

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + VV    M+V Y           + D+L                      E+  +F +M
Sbjct: 436 ENVVLWNVMLVAYG----------LLDNL---------------------NESFKIFTQM 464

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           Q  GI+P+  T    L  CS L A+D G  IH  + K  F  NV + + L+DMYAK G +
Sbjct: 465 QMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKL 524

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             AL++F  + E++ +++TA+I G A H K  +A++ F EM   G+  D I F   +SAC
Sbjct: 525 DHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISAC 584

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
                +++G++  AQ + +   S  L   + +V L  R G + +A      +  + D + 
Sbjct: 585 AGIQALNQGQQIHAQ-ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKI-FSKDNIS 642

Query: 484 WGAL 487
           W +L
Sbjct: 643 WNSL 646



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 221/475 (46%), Gaps = 42/475 (8%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE-IFGH 104
           WN  +  F+        + L+++ML+    +PD  TY  + + C    + F   E I   
Sbjct: 137 WNKVLHRFVAGKMAGRVLGLFRRMLQEK-VKPDERTYAGVLRGCGGGDVPFHCVEKIHAR 195

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +  G++  ++V N +I ++   G L  A  VFD    R+ VSW ++++G  +SG   EA
Sbjct: 196 TITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEA 255

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF  M    V P       ++SAC ++E   +G ++H  + + G +L   + NAL+ +
Sbjct: 256 VLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTL 315

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y + G    AE++F++M+ +  VS  ++I G ++ G+ D                     
Sbjct: 316 YSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSD--------------------- 354

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                     +AL LF +M    +KPD VT    LSACS +GAL  G   H +  K   +
Sbjct: 355 ----------KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMS 404

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            +++L  AL+D+Y KC +I  A + F      N + +  ++    L     ++   F++M
Sbjct: 405 SDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQM 464

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKHYSCMVDLLGRSG 463
              G+ P++ T+  IL  C     VD G +   Q + + F+ +  +   S ++D+  + G
Sbjct: 465 QMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKLG 522

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
            L+ A ++ R +    DVV W A+      H   +     A+ L + + QD GI+
Sbjct: 523 KLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFA----EALNLFK-EMQDQGIH 571



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 208/437 (47%), Gaps = 44/437 (10%)

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
            ++   G R ++ TY  L   C S G    G+++ G +LK+GF  ++ +   ++ ++++ 
Sbjct: 57  HLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAF 116

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GDL  A  VFDE  VR L  WN +++ FV        + LFR M  E+V+PDE T  G++
Sbjct: 117 GDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVL 176

Query: 188 SACAQLE-DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
             C   +   +   +IH      G   ++ + N L+D+Y K G L SA+++FD +  +  
Sbjct: 177 RGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDS 236

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           VS                               W A++ G  Q+   +EA+ LF +M  +
Sbjct: 237 VS-------------------------------WVAMLSGLSQSGCEEEAVLLFCQMHTS 265

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G+ P        LSAC+++     G  +H  + K+ F+L   +  ALV +Y++ GN   A
Sbjct: 266 GVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPA 325

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            QVF+ M +R+ ++Y ++I GL+  G +  A+  F +M    L PD +T   +LSAC   
Sbjct: 326 EQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSV 385

Query: 427 GLVDEGRKYF-----AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           G +  G+++      A MSS   L   L      +DL  +   ++ A +   S     +V
Sbjct: 386 GALLVGKQFHSYAIKAGMSSDIILEGAL------LDLYVKCSDIKTAHEFFLSTE-TENV 438

Query: 482 VVWGALFFACRLHGNVS 498
           V+W  +  A  L  N++
Sbjct: 439 VLWNVMLVAYGLLDNLN 455



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 30/257 (11%)

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           +K++    A+   Y   +     +   H M+  G++ ++ T +  L  C   G   DG  
Sbjct: 30  QKFLEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWK 89

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  I K  F   VVL   L+D+Y   G++  A+ VF EMP R    +  ++        
Sbjct: 90  LHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKM 149

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSAC------------CHGGLVDEGRKYFAQMSS 441
           A   +  F  M+   + PDE T+ G+L  C             H   +  G +     +S
Sbjct: 150 AGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYE-----NS 204

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           +F  +P       ++DL  ++G L  A+++   +    D V W A+     L G    G 
Sbjct: 205 LFVCNP-------LIDLYFKNGFLNSAKKVFDGL-QKRDSVSWVAM-----LSGLSQSGC 251

Query: 502 RAAMKLLELDPQDSGIY 518
                LL      SG+Y
Sbjct: 252 EEEAVLLFCQMHTSGVY 268



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 43/208 (20%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N+D   +  F +   N  SWN  + G+ + G   +A+ L++ M +  G  P++ T+  + 
Sbjct: 725 NIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDM-KQLGVLPNHVTFVGVL 783

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C+ +GL   G + F  + +        VH             GL       +CV +L+
Sbjct: 784 SACSHVGLVDEGIKYFQSMRE--------VH-------------GLVPKPEHYACVVDLL 822

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
                     RSG    A R   +M    ++PD +    ++SAC   +++++G       
Sbjct: 823 G---------RSGLLSRARRFVEEMP---IQPDAMVCRTLLSACIVHKNIDIGE-----F 865

Query: 207 SESGLTLTVPLANA----LMDMYVKCGK 230
           + S L    P  +A    L +MY   GK
Sbjct: 866 AASHLLELEPKDSATYVLLSNMYAVTGK 893


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 208/540 (38%), Positives = 311/540 (57%), Gaps = 13/540 (2%)

Query: 17  IAFCAISESKNL-DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           I  C I+  K + +Y   IL +++NP+SFSW   IR F + G+  EAV LY QM R  G 
Sbjct: 42  ILLCDITNYKTISNYILSILHHLRNPDSFSWGCVIRFFSQKGQFVEAVSLYVQM-RRIGL 100

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
            P +     + K CA +     G  I GHV K GFD  +YV  A++ ++   GD+  A  
Sbjct: 101 CPSSHAVSSILKSCARVEDDLCGLLIHGHVHKFGFDACVYVQTALLDLYCKIGDVVTARK 160

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           VFDE   +N+VSWNSL++G+++ G   E  R F ++ L+    D ++   MVS  A+   
Sbjct: 161 VFDEMPDKNVVSWNSLLSGYIKGGNLDEGQRFFDEIPLK----DVISWNCMVSGYAKAGK 216

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           ++    +   + E          N ++  YV CG +  A E+FD+M  +  VS  TMI G
Sbjct: 217 MDRACYLFQQMPERNFASW----NTMITGYVDCGSIVEARELFDAMPRRNSVSLITMIAG 272

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAV 313
           Y+K G +  AR++FD + +K ++ +NA+I  Y Q+ + KEAL LF+ M    + + PD +
Sbjct: 273 YSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKM 332

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    +SACSQLG L+   WI   I      L+  L TAL+D+YAKCG+I KA ++FH +
Sbjct: 333 TLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGL 392

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R+ + Y+A+I G  ++G+A DA+  F  M G  ++P+ +T+ GIL+A  H GL +EG 
Sbjct: 393 RKRDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGY 452

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           + F  M     + P + HY  MVDLLGR+G L+EA +LI  MPM  +V VWGAL  ACRL
Sbjct: 453 RCFISMKD-NGIVPSVDHYGIMVDLLGRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRL 511

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           H N+ +GE A    ++L+ + +G Y LL+ +Y     W +A K+   +E + + K PGCS
Sbjct: 512 HDNLKLGEIAVQHCIKLESETAGYYSLLSGIYATVGKWNDAKKLTTGVEGKKIIKIPGCS 571


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/511 (36%), Positives = 297/511 (58%), Gaps = 32/511 (6%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
             RPD+ T+ L    CA LG    G  +       G+  D++V ++++H++   G +G A
Sbjct: 103 AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VF     R+ V+W++++ GFV +G P +AI+++R M+ + V+ DEV MIG++ AC   
Sbjct: 163 VKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            ++ +G  +H ++   G+ + V  A +L+DMY                            
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMY---------------------------- 254

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
              AK G LD+A ++F  +  +  V W+A+I G+ Q  +S EAL LF  MQA+GI+PD+ 
Sbjct: 255 ---AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSG 311

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             V  L ACS +G L  G  +H FI +  F+ N +LGTA +DMY+KCG++A A  +F+ +
Sbjct: 312 ALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMI 370

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R+ + + A+I     HG+  DA++ F EM   G+ PD  TF  +LSA  H GLV+EG+
Sbjct: 371 SDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            +F +M + F+++P  KHY C+VDLL RSGL+EEA  L+ SM     V +W AL   C  
Sbjct: 431 LWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLN 490

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           +  + +GE  A  +LEL P D G+  L++N+Y  +  W++  +VRK+M++ G +K PGCS
Sbjct: 491 NKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCS 550

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           SIE+ G  + F++ D+SHP+ E+I   + +L
Sbjct: 551 SIEIRGTRHVFVMEDQSHPQREEIVSKVAKL 581



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 189/391 (48%), Gaps = 37/391 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  +W+  + GF+  G+  +A+ +Y++M R  G + D      + + C + 
Sbjct: 164 KVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-REDGVKGDEVVMIGVIQACTAA 222

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G  + GH+L+ G  +D+    +++ ++   G L +AC VF     RN VSW+++I
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +GF ++G   EA+RLFR+MQ   ++PD   ++  + AC+ +  L LGR +H +I      
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FD 341

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               L  A +DMY KCG L SA+ +F+                                +
Sbjct: 342 FNCILGTAAIDMYSKCGSLASAQMLFNM-------------------------------I 370

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG- 331
            ++ ++ WNA+I       R ++AL LF EM  TG++PD  T    LSA S  G +++G 
Sbjct: 371 SDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT-YTAIIGGLAL 390
           +W  R +              LVD+ A+ G + +A  +   M    ++  + A++ G  L
Sbjct: 431 LWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSG-CL 489

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           + K L+     ++ I + L PD++  L ++S
Sbjct: 490 NNKKLELGESIADNI-LELQPDDVGVLALVS 519



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 35/340 (10%)

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           R G P  A+R+FR +      PD  T    +SACA+L DL  G  +     ++G    V 
Sbjct: 86  RRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + ++L+ +Y + G +  A ++F  M  +  V+ +TM                        
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTM------------------------ 180

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                  + G+V A +  +A+ ++  M+  G+K D V  +  + AC+    +  G  +H 
Sbjct: 181 -------VAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHG 233

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + +    ++VV  T+LVDMYAK G +  A +VF  M  RN ++++A+I G A +G++ +
Sbjct: 234 HLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDE 293

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  F  M   G+ PD    +  L AC + G +  GR     +   F  +  L   +  +
Sbjct: 294 ALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG--TAAI 351

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           D+  + G L  A Q++ +M    D+++W A+   C  HG 
Sbjct: 352 DMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGR 390



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 8/251 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   ++   + + N  SW+  I GF + G+  EA+ L++ M +  G +PD+        
Sbjct: 260 LDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALL 318

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+++G   LG  + G +++  FD +  +  A I ++  CG L  A  +F+    R+L+ 
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY-- 205
           WN++I      G  ++A+ LF++M    + PD  T   ++SA +    +  G+   W+  
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKL--WFGR 435

Query: 206 -ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD 263
            ++   +T        L+D+  + G +E A ++  SM    TV     ++ G      L+
Sbjct: 436 MVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLE 495

Query: 264 IARKIFDDLPE 274
           +   I D++ E
Sbjct: 496 LGESIADNILE 506


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/479 (39%), Positives = 289/479 (60%), Gaps = 1/479 (0%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   +++ G   D ++   ++     C  +  A  +F  +   N+  + +LI+GFV SG 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             +AI+L+  M  + + PD   M  ++ AC     L  GRE+H    + GL+    +   
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           +M++Y KCG+L  A  +F+ M  + VV+ T MI  Y+  G ++ A  +F  +  K  V W
Sbjct: 188 IMELYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I G+V+ +    AL  F  MQ   ++P+  T V  LSACSQLGAL+ G W+H ++ K
Sbjct: 247 TAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               LN+ +G AL++MY++CG+I +A  VF EM +R+ +TY  +I GL+++GK+  AI  
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  MIG  L P  +TF+G+L+AC HGGLVD G K F  M+  + + P+++HY CMVDLLG
Sbjct: 367 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLG 426

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R G LEEA  LIR+M M  D ++ G L  AC++H N+ +GE+ A  L +    DSG YVL
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVL 486

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
           L+++Y  S  W+EA +VR  M+E G++K PGCSSIEVN  ++EF++ D  HP  E+IY+
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYE 545



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 187/403 (46%), Gaps = 68/403 (16%)

Query: 6   LISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI +G +    + F    + S+   +DY ++I     NPN + +   I GF+ +G   +A
Sbjct: 72  LIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDA 131

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           + LY +ML +    PDN+    + K C S L LR  G E+    LKLG   +  V   ++
Sbjct: 132 IQLYSRMLHD-SILPDNYLMASILKACGSQLALR-EGREVHSRALKLGLSSNRLVRLRIM 189

Query: 122 HVFVSCGDLGLACNVFDE----------------------------SCVR--NLVSWNSL 151
            ++  CG+LG A  VF+E                            S VR  + V W ++
Sbjct: 190 ELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM 249

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I+GFVR+     A+  FR MQ E V P+E T++ ++SAC+QL  L +GR +H Y+ +  +
Sbjct: 250 IDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 309

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            L + + NAL++MY +CG ++ A+ +FD M ++ V++  TMI G +  G           
Sbjct: 310 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG----------- 358

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                               +S++A+ LF  M    ++P  VT V  L+ACS  G +D G
Sbjct: 359 --------------------KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 332 IWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             I H           +     +VD+  + G + +A  +   M
Sbjct: 399 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 67/355 (18%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++S   + + +N    IH  +  +G +    +   L+    KC  ++ A  IF    N  
Sbjct: 52  IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHN-- 109

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                                      P  Y+  + A+I G+V +    +A+ L+  M  
Sbjct: 110 ---------------------------PNVYL--YTALIDGFVSSGNYFDAIQLYSRMLH 140

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
             I PD       L AC    AL +G  +H    K   + N ++   ++++Y KCG +  
Sbjct: 141 DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 200

Query: 366 ALQVFHEMPE------------------------------RNSLTYTAIIGGLALHGKAL 395
           A +VF EMPE                              ++++ +TA+I G   + +  
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMN 260

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            A+  F  M G  + P+E T + +LSAC   G ++ GR   + M   F +   L   + +
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNAL 319

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           +++  R G ++EA+ +   M    DV+ +  +     ++G      R A++L  +
Sbjct: 320 INMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGK----SRQAIELFRV 369


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 328/606 (54%), Gaps = 50/606 (8%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           + + K+LDY          PN  SW+  I GF + G   EA+++  +M +  G  P+  T
Sbjct: 249 LEKMKSLDYSM--------PNVVSWSAVIGGFAQNGYDEEAIEMLFRM-QVEGLVPNAQT 299

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              +   CA L    LG ++ G++ +  F  +  V NA++ V+  CGD+G A  +F +  
Sbjct: 300 LAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFS 359

Query: 142 VRN-----------------------------------LVSWNSLINGFVRSGFPREAIR 166
           V+N                                   L+SWNS+I+G+VR+    EA  
Sbjct: 360 VKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFS 419

Query: 167 LFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
           +F++M +E  +EPD  T+  +++ACA    L  G+EIH      GL     +  AL++MY
Sbjct: 420 MFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMY 479

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD----IARKIFDDLPEKYVVPWN 281
            KC  L +A+  FD ++ K V +   +I GY +   ++    +  K+  D     +  WN
Sbjct: 480 SKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWN 539

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           +I+ G V+ ++    + LF EMQ + ++PD  T    L ACS+L  L+ G   H    K 
Sbjct: 540 SILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKC 599

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            ++ +V +G ALVDMYAKCG++  A   +  +   N +++ A++   A+HG   + IS F
Sbjct: 600 GYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLF 659

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M+ +G +PD +TFL +LS+C H G V+ G ++F  M   + + P LKHY+ MVDLL R
Sbjct: 660 QTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMG-YYNVKPTLKHYTSMVDLLSR 718

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           SG L EA +LI+ MP+  D V+WGAL   C  HGN+ +GE AA +L+EL+P +SG YVLL
Sbjct: 719 SGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLL 778

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN++  +  W +  +VR MM++RG+ K+PGCS IE    ++ F+  D+SH   E+IY  L
Sbjct: 779 ANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSFLACDRSHKRAEEIYATL 838

Query: 582 VQLTRH 587
             L  H
Sbjct: 839 DYLALH 844



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 156/512 (30%), Positives = 257/512 (50%), Gaps = 53/512 (10%)

Query: 4   TGLISHGFAPSRLI---AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           TG  + GF  ++L+   A C + +  +  + T  + N+      SW   +  +L+ G   
Sbjct: 88  TGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLH-----SWKAILSVYLDHGLFE 142

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA  L+ Q+L+  G   D F +PL+FK C+ LG   LG ++ G V+K  F +++YV NA+
Sbjct: 143 EAFLLF-QVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNAL 201

Query: 121 IHVFVSCGDLGLACNVFDESCVR------------------------------------N 144
           I ++  CG L  A  V  +   R                                    N
Sbjct: 202 IDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPN 261

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +VSW+++I GF ++G+  EAI +   MQ+E + P+  T+ G++ ACA+L+ L+LG+++H 
Sbjct: 262 VVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHG 321

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           YI+         + NAL+D+Y +CG +  A +IF     K V+SC TMIVGY + G +  
Sbjct: 322 YITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSK 381

Query: 265 ARKIFDDLP----EKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCL 319
           A+++FD +     E+ ++ WN+II GYV+     EA ++F  M    GI+PD+ T    L
Sbjct: 382 AKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVL 441

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           +AC+   +L  G  IH     +    +  +G ALV+MY+KC ++  A   F E+ E++  
Sbjct: 442 TACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVP 501

Query: 380 TYTAIIGGLALHGKALDAISYFSE-MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           T+ A+I G       ++ I Y  E M G G  P+  T+  IL+       +D   + F++
Sbjct: 502 TWNALISGYT-RSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSE 560

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           M  I +L P +     ++    R   LE  +Q
Sbjct: 561 M-QISKLRPDIYTVGIILPACSRLATLERGKQ 591



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 240/515 (46%), Gaps = 25/515 (4%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN--FTYPLLFKVCASLGLRFLGYEIFGH 104
           N+    F +  +  + V++ +Q  R+  +  DN          V  S     LG ++  H
Sbjct: 25  NLTALSFQKLKQAHQPVNISQQKNRSNFSLLDNKPLNTSKYASVLDSCKCPKLGKQVHAH 84

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K GFD D ++   ++ ++  CG L  A  +F+   +RNL SW ++++ ++  G   EA
Sbjct: 85  TIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEA 144

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
             LF+ +Q + VE D      +  AC+ L  + LGR++H  + +    L + ++NAL+DM
Sbjct: 145 FLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDM 204

Query: 225 YVKCGKLESAEEIF------DSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           Y KCG L+ A+++       DS+  N  + +C    + Y    FL+  + +   +P   V
Sbjct: 205 YGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPN--V 262

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V W+A+IGG+ Q    +EA+ +   MQ  G+ P+A T    L AC++L  LD G  +H +
Sbjct: 263 VSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGY 322

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I + +F  N V+  ALVD+Y +CG++  A ++F +   +N L+   +I G    G    A
Sbjct: 323 ITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKA 382

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-------SSIFRLSPKLK 450
              F  M  +G+    I++  I+S      + DE    F  M          F L   L 
Sbjct: 383 KELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLT 442

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
             +C   +  R G    A+ +++   + +D  V GAL     ++        A +   E+
Sbjct: 443 --ACADTISLRQGKEIHAQAIVKG--LQSDTFVGGALV---EMYSKCQDLTAAQVAFDEV 495

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
             +D   +  L + Y  SN  E    + + M+  G
Sbjct: 496 MEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDG 530


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/591 (34%), Positives = 335/591 (56%), Gaps = 47/591 (7%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNP----NSFSWNVAIRGFLETGKMRE 61
           +I++GF+PS       I+         + +    +P    N F++N  I GF+  G   +
Sbjct: 37  MITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASK 96

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
               YK+M R  G  PD +T+P + + C  +       +I G +LK+G ++D++V +A++
Sbjct: 97  GFQFYKKM-RLEGVMPDKYTFPCVVRTCCEV---MEVKKIHGCLLKMGLELDVFVGSALV 152

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           + ++  G +  A  VF E  +R++V WN++ING+ + G   EA+ +FR M ++ V P   
Sbjct: 153 NTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRF 212

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+ G++S  A   DL+ G+ +H  + + G    V ++NAL+DMY KC      + I D++
Sbjct: 213 TITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKC------KHIGDAL 266

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
           +                         IF+ + EK +  WN+II  + Q       L LF 
Sbjct: 267 I-------------------------IFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFD 301

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-------EKENFNL-NVVLGTAL 353
           +M  +GI PD VT    L ACS L AL  G  IH ++       + EN  + N+++  A+
Sbjct: 302 KMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAV 361

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           +DMYAKCG++  AL++F  M +++  ++  +I G  +HG AL+A+  FS+M      P+E
Sbjct: 362 MDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNE 421

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           +T +G+LSAC H G V  GR + AQM S F + P ++HY+C++D+LGR+G LE+A ++++
Sbjct: 422 VTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQ 481

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
            MP+ A+ VVW AL  ACRLHGN  + E AA ++L+L+P+  G YVL++N+Y     +EE
Sbjct: 482 KMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEE 541

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             +VRK M+E+ V+KTPGCS IE+   ++ F   D++H EL  + + L  +
Sbjct: 542 VLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDRTHSELNALTNQLCDI 592



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 160/408 (39%), Gaps = 78/408 (19%)

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF-DSMV 242
           +  + +CA  ++LN G+++H  +   G + + P   +L++MY KCG++  A  +F D   
Sbjct: 15  VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH 74

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDD------LPEKYVVPW---------------- 280
            + V +   +I G+   G      + +        +P+KY  P                 
Sbjct: 75  ERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHG 134

Query: 281 --------------NAIIGGYVQAKRSKEALALFHE------------------------ 302
                         +A++  Y++    ++A  +F E                        
Sbjct: 135 CLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDE 194

Query: 303 -------MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
                  M   G+ P   T    LS  +  G LD+G  +H  + K  ++  V +  AL+D
Sbjct: 195 ALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALID 254

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY KC +I  AL +F  + E++  ++ +II      G     +  F +M+G G++PD +T
Sbjct: 255 MYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVT 314

Query: 416 FLGILSACCHGGLVDEGRKYFAQM-------SSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
              +L AC H   +  GR+    M                L   + ++D+  + G +  A
Sbjct: 315 ITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNA 374

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQD 514
            ++  SM    DV  W  +     +HG    ++G  + M   E  P +
Sbjct: 375 LKIFDSMS-KKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNE 421


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 205/605 (33%), Positives = 344/605 (56%), Gaps = 36/605 (5%)

Query: 17  IAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           I     ++   L+   ++   +  P+S SW   I G+ + G+   A+ ++++M+ +    
Sbjct: 84  IILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDD-VP 142

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD------- 129
           P  FT   +   CA++    +G ++   V+K G    + V N++++++   GD       
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIV 202

Query: 130 ------------------------LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
                                   + LA   F++   R++VSWN++I+G+ + GF REA+
Sbjct: 203 FDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREAL 262

Query: 166 RLFRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
            +F  M ++   +PD+ T+   +SACA LE+L LG++IH +I  +       + NAL+ M
Sbjct: 263 DIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISM 322

Query: 225 YVKCGKLESAEEIFD-SMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           Y K G +E A++I + SM+ N  V++ T ++ GY K G ++ AR+IFD L  + VV W A
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTA 382

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GYVQ   +++A+ LF  M   G KP+  T    LS  S L +LD G  IH    +  
Sbjct: 383 MIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSG 442

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYF 401
              +V +  AL+ MYAK G+I  A  VF+ +  +R+++T+T++I  LA HG   +A++ F
Sbjct: 443 NASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLF 502

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M+  G+ PD IT++G+LSAC H GLV++GR Y+  M +  ++ P   HY+CM+DL GR
Sbjct: 503 ERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGR 562

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +GLL+EA   I +MP+  DV+ WG+L  +C++H NV + E AA +LL ++P++SG Y  L
Sbjct: 563 AGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSAL 622

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y     WE A  +RK M+++GV+K  G S +++   ++ F V D  HP+ + IY+ +
Sbjct: 623 ANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMM 682

Query: 582 VQLTR 586
            ++ +
Sbjct: 683 AKIWK 687



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 223/473 (47%), Gaps = 69/473 (14%)

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F G  I   ++K G  + +++ N +++ +   G +  A  VFDE  V+++ SWN +++G+
Sbjct: 30  FTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGY 89

Query: 156 VRSGFPREAIR-------------------------------LFRDMQLERVEPDEVTMI 184
            + G   EA R                               +FR+M  + V P + T+ 
Sbjct: 90  AKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLT 149

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++++CA +E L +GR++H ++ + GL+  + +AN+L++MY K G   +A+ +FD M  K
Sbjct: 150 NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK 209

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM- 303
           +  S  TMI  + + G +D+A+  F+ + E+ VV WNA+I GY Q    +EAL +F +M 
Sbjct: 210 STSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKML 269

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-------------------- 343
             +  KPD  T    LSAC+ L  L  G  IH  I +  F                    
Sbjct: 270 MDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGV 329

Query: 344 -------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
                        NL+V+  TAL+D Y K G+I  A ++F  +  R+ + +TA+I G   
Sbjct: 330 EIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQ 389

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           +G   DA+  F  MI  G  P+  T   +LS       +D GR+  A  +     S  + 
Sbjct: 390 NGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNAS-SVS 448

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
             + ++ +  +SG + +A  +   +    D + W ++  A   HG   +GE A
Sbjct: 449 VSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG---LGEEA 498


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 186/479 (38%), Positives = 287/479 (59%), Gaps = 2/479 (0%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFV--SCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           I  H+L+     D++  + +I   +  +   L  A  V  +    NL  +N+LI G   S
Sbjct: 36  IHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTS 95

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
             P  +   +       + PD +T   +V ACAQLE+  +G + H    + G      + 
Sbjct: 96  ENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQ 155

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N+L+ MY   G + +A  +F  M    VVS T MI GY + G    AR++FD +PE+ +V
Sbjct: 156 NSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLV 215

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W+ +I GY +    ++A+  F  +QA G+  +    V  +S+C+ LGAL  G   H ++
Sbjct: 216 TWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYV 275

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            +   +LN++LGTA+VDMYA+CGN+ KA+ VF ++PE++ L +TA+I GLA+HG A  A+
Sbjct: 276 MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL 335

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
            YFSEM   G +P +ITF  +L+AC H G+V+ G + F  M     + P+L+HY CMVDL
Sbjct: 336 WYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDL 395

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGR+G L +AE+ +  MP+  +  +W AL  ACR+H NV +GER    LLE+ P+ SG Y
Sbjct: 396 LGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHY 455

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           VLL+N+Y  +N W++   +R+MM+++GV K PG S IE++G ++EF + DK+HPE+E+I
Sbjct: 456 VLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKI 514



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 201/424 (47%), Gaps = 65/424 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T L    FA SRLIAFC  S +  L Y  ++   +QNPN F +N  IRG   +    
Sbjct: 40  MLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPE 99

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            +   Y + LR  G  PDN T+P L K CA L    +G +  G  +K GF+ D YV N++
Sbjct: 100 NSFHYYIKALR-FGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSL 158

Query: 121 IHVFVSCGDLGLACNVFDESCV-------------------------------RNLVSWN 149
           +H++ S GD+  A +VF   C                                RNLV+W+
Sbjct: 159 VHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWS 218

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+G+ R+    +A+  F  +Q E V  +E  M+G++S+CA L  L +G + H Y+  +
Sbjct: 219 TMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRN 278

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            L+L + L  A++DMY +CG +E A  +F+ +  K V+  T +I G A  G+        
Sbjct: 279 KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGY-------- 330

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  +++AL  F EM   G  P  +T    L+ACS  G ++
Sbjct: 331 -----------------------AEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVE 367

Query: 330 DGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGG 387
            G+ I   +++++     +     +VD+  + G + KA +   +MP + N+  + A++G 
Sbjct: 368 RGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGA 427

Query: 388 LALH 391
             +H
Sbjct: 428 CRIH 431


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 207/555 (37%), Positives = 305/555 (54%), Gaps = 34/555 (6%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            +ILF+ + + +  SWN  I G    G  R  ++ + QML N G   D+ T   +   CA
Sbjct: 212 ARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQML-NLGVDVDSATLVNVLVACA 270

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
           ++G   LG  +  + +K GF   +  +N ++ ++  CG+L  A  VF +     +VSW S
Sbjct: 271 NVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTS 330

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I   VR G   EAI LF +MQ + + PD   +  +V ACA    L+ GRE+H +I ++ 
Sbjct: 331 IIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNN 390

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +   +P++NALM+MY KCG +E A                                 IF 
Sbjct: 391 MGSNLPVSNALMNMYAKCGSMEEA-------------------------------NLIFS 419

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            LP K +V WN +IGGY Q     EAL LF +MQ   +KPD VT    L AC+ L AL+ 
Sbjct: 420 QLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEK 478

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH  I ++ +  ++ +  ALVDMY KCG +  A Q+F  +P+++ + +T +I G  +
Sbjct: 479 GREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGM 538

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG   +AIS F +M   G+ P+E +F  IL AC H GL+ EG K F  M S   + PKL+
Sbjct: 539 HGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLE 598

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY+CMVDLL RSG L  A + I +MP+  D  +WGAL   CR+H +V + E+ A  + EL
Sbjct: 599 HYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFEL 658

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +P+++  YVLLAN+Y ++  WEE  K+++ + + G++   GCS IEV G    F   D S
Sbjct: 659 EPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTS 718

Query: 571 HPELEQIYDCLVQLT 585
           HP+ + I   L +LT
Sbjct: 719 HPQAKMIDSLLRKLT 733



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 202/451 (44%), Gaps = 36/451 (7%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
             N  +   N  I  F E G +R A+ L  +  R   +  +  TY  + ++CA L     
Sbjct: 19  THNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQR---SELELNTYCSVLQLCAELKSLED 75

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  +   +   G  +D  +   ++ ++V+CGDL     +FD      +  WN L++ + +
Sbjct: 76  GKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAK 135

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
            G  RE++ LF  MQ   +  D  T   ++   A    +   + +H Y+ + G      +
Sbjct: 136 IGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAV 195

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N+L+  Y KCG++ESA  +FD + ++ VVS                             
Sbjct: 196 VNSLIAAYFKCGEVESARILFDELSDRDVVS----------------------------- 226

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
             WN++I G      S+  L  F +M   G+  D+ T V+ L AC+ +G L  G  +H +
Sbjct: 227 --WNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAY 284

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
             K  F+  V+    L+DMY+KCGN+  A +VF +M E   +++T+II      G   +A
Sbjct: 285 GVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEA 344

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           I  F EM   GL PD      ++ AC     +D+GR+    +     +   L   + +++
Sbjct: 345 IGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKK-NNMGSNLPVSNALMN 403

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +  + G +EEA  +   +P+  ++V W  + 
Sbjct: 404 MYAKCGSMEEANLIFSQLPV-KNIVSWNTMI 433



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 12/223 (5%)

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V  NA I  + +    + A+ L    Q + ++ +   +V  L  C++L +L+DG  +H 
Sbjct: 24  TVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSV--LQLCAELKSLEDGKRVHS 81

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            I      ++ VLG  LV MY  CG++ K  ++F  +       +  ++   A  G   +
Sbjct: 82  IISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRE 141

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           ++  F +M  +G+  D  TF  +L        V E ++        + L      Y+ +V
Sbjct: 142 SVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHG-----YVLKLGFGSYNAVV 196

Query: 457 DLL----GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           + L     + G +E A  L   +    DVV W ++   C ++G
Sbjct: 197 NSLIAAYFKCGEVESARILFDELS-DRDVVSWNSMISGCTMNG 238


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 302/518 (58%), Gaps = 34/518 (6%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           MLR+G + P+ FT+P   K CA+L L   G ++  HV K G  ++ +V  ++I ++  C 
Sbjct: 1   MLRSGAS-PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCS 59

Query: 129 DLGLACNVFDESC-VRNL-VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
            +  A  +FDE+   R L V +NSL++G+  +   ++ + LF +M+   VE + VTM+G+
Sbjct: 60  LIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           V  C    +L LG  +H +  + GL +   + N L+ MYVK G++               
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEI--------------- 164

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
                           D  RK+FD++P K ++ WNA+I GY Q   +   L L+ EM++ 
Sbjct: 165 ----------------DCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESK 208

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G  PD +T V  LS+C+ LGAL  G  + R +E   F+ N  L  ALV+MYA+CGN+ KA
Sbjct: 209 GFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKA 268

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
             +F  MP ++ +++TAIIGG  +HG+   A+  F EMI  G+ PD   F+ +LSAC H 
Sbjct: 269 RDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHA 328

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GL ++G  YF  M   + L P  +HYSCMVDLLGR+G L EA +LI SM + AD  +WGA
Sbjct: 329 GLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGA 388

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  AC++H NV + E A  +++EL+P ++G YVLL+N+Y ++   E   +VR +M +R +
Sbjct: 389 LLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKL 448

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +K PGCS +E  G ++ F   D++HP+  +IY  L +L
Sbjct: 449 KKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNEL 486



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 198/411 (48%), Gaps = 48/411 (11%)

Query: 4   TGLISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNS----FSWNVAIRGFLET 56
           TG +   F  + LI+    C++ ++       + LF+ +NP S      +N  + G+   
Sbjct: 39  TGCLLEPFVQTSLISMYGKCSLIDN------ARKLFD-ENPQSRKLTVCYNSLLSGYALN 91

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
            ++++ V L+ +M R  G   +  T   L + C   G   LG  + G  +K G D+D  V
Sbjct: 92  SRVKDVVVLFCEM-RELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSV 150

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N ++ ++V  G++     +FDE   + L++WN++ING+ ++G     + L+++M+ +  
Sbjct: 151 GNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGF 210

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            PD +T++G++S+CA L  L++G+E+   +   G +    L NAL++MY +CG L+ A +
Sbjct: 211 CPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARD 270

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           IFD M  K+VVS T +I GY   G                               + + A
Sbjct: 271 IFDGMPVKSVVSWTAIIGGYGMHG-------------------------------QGEVA 299

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVD 355
           + LF EM   GIKPD    V  LSACS  G  + G+     +E++          + +VD
Sbjct: 300 VGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVD 359

Query: 356 MYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +  + G + +A ++   M  R +   + A++G   +H     A   F ++I
Sbjct: 360 LLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVI 410


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/456 (41%), Positives = 276/456 (60%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FDE    +++S+ SL++  ++     +AI +F         PD    +G +SA   
Sbjct: 72  AGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGG 131

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L D  +G  +H  I   GL   + + NAL+DMY +CGK E A  +FD M+ K  V+  +M
Sbjct: 132 LGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSM 191

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GY K   +D A   F  +P K  V W A+I G+VQ K+  +AL LF +M   G +P+ 
Sbjct: 192 LYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNH 251

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           +T V  LSAC+ +GALD G  IH +  K N   N+++  AL+DMYAK G+IA A  VF E
Sbjct: 252 ITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEE 311

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           +  +++ T+T +I    + G    A+  F +M+  G++P+ +TF+ +LSAC H GL+ EG
Sbjct: 312 VQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEG 371

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           R+ F +M  ++ + P+L+HY CMVDLLGR GLLEEAE LI  M +  D+V+W +L  AC 
Sbjct: 372 RELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACL 431

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
            HGN  + E A M++++ +P D G+YVLL NMY  SN W+EA  +RK M  R + K PGC
Sbjct: 432 AHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGC 491

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           S IEV+G+++EF+V DK+H    +IY  L  + RH 
Sbjct: 492 SWIEVDGVVHEFLVEDKTHDARREIYVTLEIMARHL 527



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 160/360 (44%), Gaps = 67/360 (18%)

Query: 7   ISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ++HG  P++    C I    +E        ++   + +P+  S+   +   L+     +A
Sbjct: 44  LTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKA 103

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++   + +G  RPD F           LG + +G  + G + + G D ++ V NA++ 
Sbjct: 104 ISVFSHAIASG-HRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVD 162

Query: 123 VFVSCGDLGLACNVFDE-----------------SCV--------------RNLVSWNSL 151
           ++  CG    A  VFD                   CV              ++ VSW +L
Sbjct: 163 MYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTAL 222

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I G V+   P +A+ LF  M LE   P+ +T++G++SACA +  L+LGR IH Y S+S  
Sbjct: 223 ITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNA 282

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           T  + + NALMDMY K G + SA  +F+ +  K   + TTMI  +   G           
Sbjct: 283 TTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQG----------- 331

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                                 ++A+ LF +M  +GI P++VT V  LSACS  G + +G
Sbjct: 332 --------------------NGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEG 371



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 131/285 (45%), Gaps = 34/285 (11%)

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           N+  +SC  +   YA+FG    A ++FD++P   ++ + +++  +++     +A+++F  
Sbjct: 51  NQQSISCK-IFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH 109

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
             A+G +PD    V  LSA   LG    G  +H  I +   +  +V+  ALVDMY +CG 
Sbjct: 110 AIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGK 169

Query: 363 -------------------------------IAKALQVFHEMPERNSLTYTAIIGGLALH 391
                                          +  AL  F++MP ++++++TA+I G    
Sbjct: 170 FEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQD 229

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
            + + A+  F +M+  G  P+ IT +G+LSAC   G +D GR       S    +  +  
Sbjct: 230 KQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHG-YGSKSNATTNIIV 288

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            + ++D+  +SG +  A  +   + M  D   W  +  +  + GN
Sbjct: 289 TNALMDMYAKSGSIASAFSVFEEVQM-KDAFTWTTMISSFTVQGN 332


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 301/541 (55%), Gaps = 33/541 (6%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
            SWN  + G  + G   EA  ++ QM + G   PD+ TY  L     S        E+  
Sbjct: 490 ISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLV-PDSTTYLSLLNTHGSTDALEWVNEVHK 548

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           H ++ G   D  V +A IH+++ CG +  A  +FD+  VR++ +WN++I G  +    RE
Sbjct: 549 HAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGRE 608

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+ LF  MQ E   PD  T I ++SA    E L   +E+H + +++GL + + + NAL+ 
Sbjct: 609 ALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVH 667

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
            Y KCG                        V YAK        ++FDD+ E+ V  W  +
Sbjct: 668 TYSKCGN-----------------------VKYAK--------QVFDDMVERNVTTWTMM 696

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           IGG  Q     +A + F +M   GI PDA T V  LSAC+  GAL+    +H        
Sbjct: 697 IGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGL 756

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             ++ +G ALV MYAKCG+I  A  VF +M ER+  ++T +IGGLA HG+ L+A+ +F +
Sbjct: 757 VSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVK 816

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M   G  P+  +++ +L+AC H GLVDEGR+ F  M+  + + P ++HY+CMVDLLGR+G
Sbjct: 817 MKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAG 876

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           LLEEAE  I +MP+  D   WGAL  AC  +GN+ + E AA + L+L P+ +  YVLL+N
Sbjct: 877 LLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSN 936

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           +Y  +  WE+   VR MM+ +G+ K PG S IEV+  ++ F+V D SHPE ++IY  L  
Sbjct: 937 IYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLND 996

Query: 584 L 584
           L
Sbjct: 997 L 997



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/475 (30%), Positives = 236/475 (49%), Gaps = 37/475 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S ++D    +   +   + FSW V I G  + G+ +EA  L+ QM RN G  P+  TY
Sbjct: 366 AKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRN-GCLPNLTTY 424

Query: 83  PLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
             +    A      L +   +  H  + GF  D+ + NA+IH++  CG +  A  VFD  
Sbjct: 425 LSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
           C R+++SWN+++ G  ++G   EA  +F  MQ E + PD  T + +++     + L    
Sbjct: 485 CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVN 544

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E+H +  E+GL     + +A + MY++CG ++ A  +FD                     
Sbjct: 545 EVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDK-------------------- 584

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                      L  ++V  WNA+IGG  Q +  +EAL+LF +MQ  G  PDA T ++ LS
Sbjct: 585 -----------LSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           A     AL+    +H         +++ +G ALV  Y+KCGN+  A QVF +M ERN  T
Sbjct: 634 ANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTT 692

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +T +IGGLA HG   DA S+F +M+  G++PD  T++ ILSAC   G ++  ++      
Sbjct: 693 WTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAV 752

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           S   L   L+  + +V +  + G +++A  +   M +  DV  W  +      HG
Sbjct: 753 SA-GLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHG 805



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/492 (29%), Positives = 241/492 (48%), Gaps = 41/492 (8%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           ++AV + K  ++ G    D+F+Y  + + C       L  ++   ++K G + ++YV N 
Sbjct: 100 KDAVAMLKIRVQQG-IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ V++ CG L  A  VFD+   +N+  W ++I G+   G   +A+R++  M+ E  +P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E+T + ++ AC    +L  G++IH +I +SG    V +  AL++MYVKCG +E A+ IFD
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            MV + V+S T MI G A +G                               R +EA  L
Sbjct: 279 KMVERNVISWTVMIGGLAHYG-------------------------------RGQEAFHL 307

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +MQ  G  P++ T V  L+A +  GAL+    +H         L++ +G ALV MYAK
Sbjct: 308 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 367

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
            G+I  A  VF  M ER+  ++T +IGGLA HG+  +A S F +M   G +P+  T+L I
Sbjct: 368 SGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSI 427

Query: 420 LSACCHGGLVD-EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           L+A         E  K   + +        L+  + ++ +  + G +++A  +   M   
Sbjct: 428 LNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM-CD 486

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ----DSGIYVLLANMYRDSNMWEEA 534
            DV+ W A+      +G    G  A    L++  +    DS  Y+ L N +  ++  E  
Sbjct: 487 RDVISWNAMMGGLAQNG---CGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWV 543

Query: 535 GKVRKMMEERGV 546
            +V K   E G+
Sbjct: 544 NEVHKHAVETGL 555



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 183/383 (47%), Gaps = 34/383 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW V I G    G+ +EA  L+ QM R G   P+++TY  +    AS G      E+
Sbjct: 284 NVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI-PNSYTYVSILNANASAGALEWVKEV 342

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             H +  G  +D+ V NA++H++   G +  A  VFD    R++ SW  +I G  + G  
Sbjct: 343 HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRG 402

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMV--SACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           +EA  LF  MQ     P+  T + ++  SA A    L   + +H +  E+G    + + N
Sbjct: 403 QEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGN 462

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+ MY KCG ++ A  +FD M ++ V+S                               
Sbjct: 463 ALIHMYAKCGSIDDARLVFDGMCDRDVIS------------------------------- 491

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA++GG  Q     EA  +F +MQ  G+ PD+ T +  L+      AL+    +H+   
Sbjct: 492 WNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAV 551

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +     +  +G+A + MY +CG+I  A  +F ++  R+  T+ A+IGG A      +A+S
Sbjct: 552 ETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALS 611

Query: 400 YFSEMIGVGLMPDEITFLGILSA 422
            F +M   G +PD  TF+ ILSA
Sbjct: 612 LFLQMQREGFIPDATTFINILSA 634



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 14/298 (4%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  N+ Y  ++  ++   N  +W + I G  + G   +A   + QMLR G   PD  TY
Sbjct: 670 SKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG-IVPDATTY 728

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CAS G      E+  H +  G   D+ V NA++H++  CG +  A +VFD+   
Sbjct: 729 VSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVE 788

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++ SW  +I G  + G   EA+  F  M+ E  +P+  + + +++AC+    ++ GR  
Sbjct: 789 RDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQ 848

Query: 203 HWYISES-GLTLTVPLANALMDMYVKCGKLESAE--------EIFDSMVNKTVVSCTTMI 253
              +++  G+  T+     ++D+  + G LE AE        E  D+     + +C T  
Sbjct: 849 FLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT-- 906

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
             Y      + A K    L  K    +  +   Y    + ++ L +   MQ  GI+ +
Sbjct: 907 --YGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKE 962



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARKIFDDL 272
           +++ L+D     G + S+  + ++ V + +V  +T++ G    +++  FL I+   F   
Sbjct: 13  VSSELIDGQCGRGVISSSFRMNEAQVQRILVG-STLLSGRQMRHSRLYFLSIS-GCFKSE 70

Query: 273 PEKYV----VPWNAIIGGYVQAKR----SKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
             KY+    V  NA + G  +       +K+A+A+       GI  D+ + V+ L  C +
Sbjct: 71  KHKYLPSVLVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLK 130

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
              +     +H  I K     N+ +   L+ +Y +CG +  A QVF ++ ++N   +T +
Sbjct: 131 QEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTM 190

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIF 443
           IGG A +G A DA+  + +M      P+EIT+L IL ACC    +  G+K  A  + S F
Sbjct: 191 IGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGF 250

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +   +++  + +V++  + G +E+A QLI    +  +V+ W  + 
Sbjct: 251 QSDVRVE--TALVNMYVKCGSIEDA-QLIFDKMVERNVISWTVMI 292


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/511 (36%), Positives = 297/511 (58%), Gaps = 32/511 (6%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
             RPD+ T+ L    CA LG    G  +       G+  D++V ++++H++   G +G A
Sbjct: 103 AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VF     R+ V+W++++ GFV +G P +AI+++R M+ + V+ DEV MIG++ AC   
Sbjct: 163 VKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            ++ +G  +H ++   G+ + V  A +L+DMY                            
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMY---------------------------- 254

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
              AK G LD+A ++F  +  +  V W+A+I G+ Q  +S EAL LF  MQA+GI+PD+ 
Sbjct: 255 ---AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSG 311

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             V  L ACS +G L  G  +H FI +  F+ N +LGTA +DMY+KCG++A A  +F+ +
Sbjct: 312 ALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMI 370

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R+ + + A+I     HG+  DA++ F EM   G+ PD  TF  +LSA  H GLV+EG+
Sbjct: 371 SDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            +F +M + F+++P  KHY C+VDLL RSGL+EEA  L+ SM     V +W AL   C  
Sbjct: 431 LWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLN 490

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           +  + +GE  A  +LEL P D G+  L++N+Y  +  W++  +VRK+M++ G +K PGCS
Sbjct: 491 NKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCS 550

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           SIE+ G  + F++ D+SHP+ E+I   + +L
Sbjct: 551 SIEIRGTRHVFVMEDQSHPQREEIVSKVAKL 581



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 189/391 (48%), Gaps = 37/391 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  +W+  + GF+  G+  +A+ +Y++M R  G + D      + + C + 
Sbjct: 164 KVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-REDGVKGDEVVMIGVIQACTAA 222

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G  + GH+L+ G  +D+    +++ ++   G L +AC VF     RN VSW+++I
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +GF ++G   EA+RLFR+MQ   ++PD   ++  + AC+ +  L LGR +H +I      
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FD 341

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               L  A +DMY KCG L SA+ +F+ + ++ ++                         
Sbjct: 342 FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL------------------------ 377

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG- 331
                  WNA+I       R ++AL LF EM  TG++PD  T    LSA S  G +++G 
Sbjct: 378 -------WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT-YTAIIGGLAL 390
           +W  R +              LVD+ A+ G + +A  +   M    ++  + A++ G  L
Sbjct: 431 LWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSG-CL 489

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           + K L+     ++ I + L PD++  L ++S
Sbjct: 490 NNKKLELGESIADNI-LELQPDDVGVLALVS 519



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 35/340 (10%)

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           R G P  A+R+FR +      PD  T    +SACA+L DL  G  +     ++G    V 
Sbjct: 86  RRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + ++L+ +Y + G +  A ++F  M  +  V+ +TM+                       
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVA---------------------- 182

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                    G+V A +  +A+ ++  M+  G+K D V  +  + AC+    +  G  +H 
Sbjct: 183 ---------GFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHG 233

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + +    ++VV  T+LVDMYAK G +  A +VF  M  RN ++++A+I G A +G++ +
Sbjct: 234 HLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDE 293

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  F  M   G+ PD    +  L AC + G +  GR     +   F  +  L   +  +
Sbjct: 294 ALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG--TAAI 351

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           D+  + G L  A Q++ +M    D+++W A+   C  HG 
Sbjct: 352 DMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGR 390



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 8/251 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   ++   + + N  SW+  I GF + G+  EA+ L++ M +  G +PD+        
Sbjct: 260 LDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALL 318

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+++G   LG  + G +++  FD +  +  A I ++  CG L  A  +F+    R+L+ 
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY-- 205
           WN++I      G  ++A+ LF++M    + PD  T   ++SA +    +  G+   W+  
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKL--WFGR 435

Query: 206 -ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD 263
            ++   +T        L+D+  + G +E A ++  SM    TV     ++ G      L+
Sbjct: 436 MVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLE 495

Query: 264 IARKIFDDLPE 274
           +   I D++ E
Sbjct: 496 LGESIADNILE 506


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 188/507 (37%), Positives = 297/507 (58%), Gaps = 34/507 (6%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           DN++  +     A +    +G +     LKL    D +V NA+I+++ SC     A  V 
Sbjct: 92  DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 151

Query: 138 DES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           D +     ++VSWN++I G++R G P +A++ F  M  E+V  DEVT++ ++ ACA+   
Sbjct: 152 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 211

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           + +G   H  +  +G  +   + ++L+ MY KCG +E                       
Sbjct: 212 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEE---------------------- 249

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                    AR++F+ +PE+ VV W ++I G  Q+ R KEA+ LF +MQ  G+K D  T 
Sbjct: 250 ---------ARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATI 300

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              +S+C Q+GALD G ++H + +       + +  +L+DMY+KCG++ KA Q+FH + +
Sbjct: 301 ATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTK 360

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRK 434
           R+  T+T +I G A++G  ++A+  F++M G   +MP+E+ FLG+L+AC HGGLV++G  
Sbjct: 361 RDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYH 420

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F +MS ++ L P+++HY CMVDLLGR+ LL EAEQ I+ MP+A DVVVW +L FACR  
Sbjct: 421 HFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRAS 480

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           G V + E AA ++ +L+P+  G +VLL+N+Y  +  W +   VR  M      K PGCS 
Sbjct: 481 GQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSF 540

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCL 581
           IEV+G ++EF   D+SH E E I + L
Sbjct: 541 IEVDGCIHEFFAGDESHFETEAICNTL 567



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 34/332 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G++  G   +A+  + QM +    R D  T   +   CA  G   +G      
Sbjct: 163 SWNTIIAGYIRGGMPNKALQSFHQMAKEQ-VRLDEVTLLNVLVACARTGAMKVGSLCHAL 221

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+  GF+++ Y+ ++++ ++  CG +  A  VF+    RN+V W S+I G  +SG  +EA
Sbjct: 222 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEA 281

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LFRDMQ+  V+ D+ T+  +VS+C Q+  L+LGR +H Y    GL   + + N+L+DM
Sbjct: 282 VDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDM 341

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG +  A +IF  +  + V + T MI+G+A  G                        
Sbjct: 342 YSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGL----------------------- 378

Query: 285 GGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKEN 342
                     EAL LF +M+    + P+ V  +  L+ACS  G ++ G    HR  +  N
Sbjct: 379 --------CVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 430

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               +     +VD+  +   +A+A Q   +MP
Sbjct: 431 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMP 462



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N   W   I G  ++G+ +EAVDL++ M +  G + D+ T   +   C  +G   LG  +
Sbjct: 261 NVVCWTSMIAGCTQSGRFKEAVDLFRDM-QIAGVKADDATIATVVSSCGQMGALDLGRYL 319

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             +    G   ++ V N++I ++  CGD+  A  +F     R++ +W  +I GF  +G  
Sbjct: 320 HAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLC 379

Query: 162 REAIRLFRDMQLE-RVEPDEVTMIGMVSACAQ 192
            EA+ LF  M+ E +V P+EV  +G+++AC+ 
Sbjct: 380 VEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 411



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +++   +I   +   + F+W V I GF   G   EA+DL+ QM       P+   +
Sbjct: 343 SKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIF 402

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF--DES 140
             +   C+  GL   GY  F  + K+   V    H   +   +    L      F  D  
Sbjct: 403 LGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMP 462

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
              ++V W SL+     SG  +  +  +   ++E++EP
Sbjct: 463 VAPDVVVWRSLLFACRASG--QVGLAEYAAERIEQLEP 498


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 211/597 (35%), Positives = 326/597 (54%), Gaps = 93/597 (15%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKI--LF--NVQNPNS-FSWNVAIRGFLET 56
           T+T L++ G           I+  ++LDY  K   LF  +V++ ++ F  N  IRG+   
Sbjct: 59  TLTKLVNAG---------AEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSA 109

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G  REA+ LY +ML  G T P+++T+P +   C  +     G ++ G V+K+G + D+++
Sbjct: 110 GLGREAILLYVRMLVLGVT-PNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFI 168

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N +IH +  CG +     VF+    RN+VSW SLI G+ R   P+EA+ LF +M     
Sbjct: 169 QNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM----- 223

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
                                               L   + NAL+DMY+KCG +++A+ 
Sbjct: 224 ------------------------------------LNKVMVNALVDMYMKCGAIDAAKR 247

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD  V++ +V   T++  YA+ G                                ++EA
Sbjct: 248 LFDECVDRNLVLYNTILSNYARQGL-------------------------------AREA 276

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQL-----GALDDGIWIHRFIEKENFNLNVVLGT 351
           LA+  EM   G +PD VT +  +SA +QL     G +  G W+H +IEK     ++ L T
Sbjct: 277 LAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNT 336

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALVDM+A+CG+   A+QVF++M ER+   +TA IG +A+ G    A   F++M+  G+ P
Sbjct: 337 ALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKP 396

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D + F+ +L+AC HGG V++G   F+ M     +SP+++HY CMVDLLGR+GLL EA  L
Sbjct: 397 DVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDL 455

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           I+SMPM  + VVWG+L  ACR+H NV +   AA ++ EL PQ +G++VLL+N+Y  +  W
Sbjct: 456 IKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKW 515

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            +  +VR  + E+GV K PG SS++VNG+++EF   D+SHPE+  I   L ++   F
Sbjct: 516 TDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRF 572


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 208/604 (34%), Positives = 338/604 (55%), Gaps = 24/604 (3%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG   H F  ++L+          LD    +   +   N +SW   +   ++ G   EA+
Sbjct: 88  TGFHGHEFVETKLLQM--YGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEAL 145

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL------------GFD 111
            L+++ L+      + F +P++ K+C  L +  LG ++ G V+K             GF 
Sbjct: 146 SLFEK-LQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFS 204

Query: 112 VDMYV-HNAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLF 168
           V   V +N +I  +   G++  A  +FD  E   ++ +SWNS+I+G+  +    EA+ +F
Sbjct: 205 VKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMF 264

Query: 169 RDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
           RD+ +E  +E D  T+  +++ACA +  L  G+E+H      GL     +  AL++MY K
Sbjct: 265 RDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSK 324

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD----IARKIFDDLPEKYVVPWNAI 283
           C  L++A+  FD +  +   +   +I GYA    L+    + +K+  D  E  V  WN I
Sbjct: 325 CEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGI 384

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I G+V+   ++ AL LF EMQ + ++PD  T    L AC++L  +  G  +H    ++ +
Sbjct: 385 ISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGY 444

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
            L+V +G ALVDMYAKCG+I  A+QV++ +   N ++  A++   A+HG   + I+ F  
Sbjct: 445 ELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRN 504

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+G G  PD +TFL +LS+C H G V+ G ++F  M+  + ++P LKHY+C+VDLL R+G
Sbjct: 505 MLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAG 563

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            L+EA +L++ +P   D V+WGAL   C + GNV +GE AA  L+EL+P ++G YVLLAN
Sbjct: 564 RLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLAN 623

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           +Y  +  W +  + R+M+++RG+ K+PGCS IE    ++ F+  DKSH + E IY  L  
Sbjct: 624 LYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDN 683

Query: 584 LTRH 587
           L  H
Sbjct: 684 LNTH 687



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D+ TY  L + C +L L   G ++  H LK GF    +V   ++ ++   G L  A  VF
Sbjct: 61  DSSTYASLLESCRTLNL---GKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
            +   RNL SW ++++  V  G+  EA+ LF  +QL+ +  +      ++  C  L  L 
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLE 177

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
           LGR++H  + +                  +C  + SA +IF     K VVS  TMIVGY 
Sbjct: 178 LGRQLHGVVIK------------------RCADMGSALKIFSGFSVKNVVSYNTMIVGYC 219

Query: 258 KFGFLDIARKIFD--DLPEKYVVPWNAIIGGYVQAKRSKEALALFHE-MQATGIKPDAVT 314
           + G ++ A+++FD  +L  K  + WN++I GY       EAL++F + +   GI+ D+ T
Sbjct: 220 ENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFT 279

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               L+AC+ + +L  G  +H        + N  +G ALV+MY+KC ++  A   F  + 
Sbjct: 280 LGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVT 339

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           ER++ T+  +I G A   +  +  +   +M G G  P+  T+ GI+S     G  +   +
Sbjct: 340 ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALR 399

Query: 435 YFAQMSS 441
            F +M +
Sbjct: 400 LFTEMQT 406


>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
 gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
          Length = 543

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 196/488 (40%), Positives = 304/488 (62%), Gaps = 3/488 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVS-CGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +   H++K G  ++ +  + ++    S  G++  A  VF +    NL SWN++I GF +S
Sbjct: 42  QFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQS 101

Query: 159 GFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
             P+ A+ LF DM +  +VEP  +T   +  A +QL   + G ++H  I + GL     +
Sbjct: 102 SNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFI 161

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N ++ MY   G L  A  IF+  +   VVS  +MI+G AK G +D +RK+FD +P K  
Sbjct: 162 RNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNP 221

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + WN++IGGYV+    KEAL LF +MQ   I+P   T V  L+A +Q+GAL  G+WIH +
Sbjct: 222 ISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEY 281

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+K N  LN ++ TA++DMY KCG+I  ALQVF ++P R+  ++ ++I GLA++G   +A
Sbjct: 282 IKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEA 341

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           I  F  +    L PD I+F+ +L+AC HG +VDEG ++F++M + +R+ P +KHY+ MVD
Sbjct: 342 ILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVD 401

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           ++ R+G LEEAEQ I++MP+  D ++WG L  ACR++GN  + +RAA K+ ELDP+++  
Sbjct: 402 MISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEETMG 461

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV-RDKSHPELEQ 576
           YVL+AN++   N +  A + R  M  + VEK PG S IEV+  ++EFI    + H + ++
Sbjct: 462 YVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEVHEFIAGGGRLHRKAQE 521

Query: 577 IYDCLVQL 584
           IY  L QL
Sbjct: 522 IYIVLGQL 529



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 213/422 (50%), Gaps = 65/422 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G     FA SR++AFCA S   N+DY   +   +QNPN FSWN  IRGF ++   + A+
Sbjct: 50  SGQAIESFAASRILAFCA-SPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIAL 108

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  ML +    P   TYP +FK  + LGL   G ++ G ++KLG   D ++ N ++++
Sbjct: 109 YLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYM 168

Query: 124 FVS-------------------------------CGDLGLACNVFDESCVRNLVSWNSLI 152
           + +                               CG++  +  +FD+  V+N +SWNS+I
Sbjct: 169 YATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMI 228

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+VR+G  +EA++LF  MQ ER++P E TM+ +++A AQ+  L  G  IH YI ++ L 
Sbjct: 229 GGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQ 288

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L   +  A++DMY KCG + +A ++F                               + +
Sbjct: 289 LNAIVVTAIIDMYCKCGSIGNALQVF-------------------------------EKI 317

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           P + +  WN++I G       KEA+ +F  ++++ +KPD ++ +  L+AC+    +D+G+
Sbjct: 318 PCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGM 377

Query: 333 -WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            +  R         ++     +VDM ++ G + +A Q    MP E++++ +  ++    +
Sbjct: 378 EFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRI 437

Query: 391 HG 392
           +G
Sbjct: 438 YG 439


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 189/525 (36%), Positives = 313/525 (59%), Gaps = 12/525 (2%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW   I  +      +EA+  + +M ++ G +P++FT+  +   C  L    LG E 
Sbjct: 130 NVVSWTAMIAAYARHEHGQEALGFFYEM-QDVGIQPNHFTFASILPACTDL--EVLG-EF 185

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              ++K GF+ +++V N ++ ++   G +  A  +FD+   R++VSWN++I G+V++G  
Sbjct: 186 HDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLI 245

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            +A++LF+++     + D +T   M++  AQ  D+    E+   + E  L       N +
Sbjct: 246 EDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSW----NTM 297

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +  YV+ G ++ A ++F  M  + V+S   +I G+A+ G ++ A K+F  +PE  VV WN
Sbjct: 298 IAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWN 357

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I GY Q  +++ AL LF +MQ   +KP+  T    L AC+ L  L+ G   H  + + 
Sbjct: 358 AMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS 417

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  +V++G  LV MYAKCG+I  A +VF  M +++S + +A+I G A++G + +++  F
Sbjct: 418 GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELF 477

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            +M   GL PD +TF+G+LSACCH GLVDEGR+YF  M+  + ++P ++HY CM+DLLGR
Sbjct: 478 EQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGR 537

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G  +EA  LI  MP+  D  +WG+L  ACR H N+ +GE+ A  L+ L+PQ+   YVLL
Sbjct: 538 AGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLL 597

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +N+Y  +  W++ G VR  M++R V+K  GCS I +   ++ F+V
Sbjct: 598 SNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLV 642



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 208/386 (53%), Gaps = 13/386 (3%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           ++   + G++REA+ + + M+ NG   P + TY  L + C +         +  H+++  
Sbjct: 36  VKSLCKQGRLREALHILQDMVENG-IWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 110 FDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF 168
           F+  D+ + N ++ ++V  G L  A  VFDE  V+N+VSW ++I  + R    +EA+  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
            +MQ   ++P+  T   ++ AC  LE L    E H  I + G    V + N L+DMY K 
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTDLEVLG---EFHDEIVKGGFESNVFVGNGLVDMYAKR 211

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G +E A E+FD M  + VVS   MI GY + G ++ A K+F ++P++ V+ WN ++ GY 
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYA 271

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           Q    + A+ LF +M    +    V+    ++   Q G++ +   + + + +     NV+
Sbjct: 272 QCGDVENAVELFEKMPEQNL----VSWNTMIAGYVQNGSVKEAFKLFQIMPER----NVI 323

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
              A++  +A+ G + +AL++F  MPE N +++ A+I G + +G+A +A+  F +M  V 
Sbjct: 324 SWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD 383

Query: 409 LMPDEITFLGILSACCHGGLVDEGRK 434
           + P+  TF  +L AC    ++++G +
Sbjct: 384 MKPNTETFAIVLPACAALAVLEQGNE 409



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 169/366 (46%), Gaps = 49/366 (13%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           + L+    + G  REA+ + +DM    + P   T   ++  C   + L   + +H ++ +
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 209 SGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +      + L N L+ +YVK G L  A                               R+
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEA-------------------------------RR 121

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD++P K VV W A+I  Y + +  +EAL  F+EMQ  GI+P+  T    L AC+ L  
Sbjct: 122 VFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEV 181

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L +    H  I K  F  NV +G  LVDMYAK G I  A ++F +MP+R+ +++ A+I G
Sbjct: 182 LGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAG 238

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
              +G   DA+  F E+       D IT+  +++     G V+   + F +M        
Sbjct: 239 YVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVELFEKMP-----EQ 289

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
            L  ++ M+    ++G ++EA +L + MP   +V+ W A+      +G V      A+KL
Sbjct: 290 NLVSWNTMIAGYVQNGSVKEAFKLFQIMP-ERNVISWNAVISGFAQNGQV----EEALKL 344

Query: 508 LELDPQ 513
            +  P+
Sbjct: 345 FKTMPE 350


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/559 (35%), Positives = 308/559 (55%), Gaps = 32/559 (5%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           +   Y   +  + Q PN F +N  I GF+      E +DL+   +R  G     FT+PL+
Sbjct: 59  RQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLS-IRKHGLYLHGFTFPLV 117

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K C     R LG ++   V+K GF+ D+    +++ ++   G L  A  +FDE   R++
Sbjct: 118 LKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSV 177

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           V+W +L +G+  SG  REAI LF+ M    V+PD   ++ ++SAC  + DL+ G  I  Y
Sbjct: 178 VTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKY 237

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           + E             M+M                   K     TT++  YAK G ++ A
Sbjct: 238 MEE-------------MEM------------------QKNSFVRTTLVNLYAKCGKMEKA 266

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           R +FD + EK +V W+ +I GY      KE + LF +M    +KPD  + V  LS+C+ L
Sbjct: 267 RSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASL 326

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           GALD G W    I++  F  N+ +  AL+DMYAKCG +A+  +VF EM E++ +   A I
Sbjct: 327 GALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            GLA +G    + + F +   +G+ PD  TFLG+L  C H GL+ +G ++F  +S ++ L
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYAL 446

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
              ++HY CMVDL GR+G+L++A +LI  MPM  + +VWGAL   CRL  +  + E    
Sbjct: 447 KRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLK 506

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +L+ L+P ++G YV L+N+Y     W+EA +VR MM ++G++K PG S IE+ G ++EF+
Sbjct: 507 ELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFL 566

Query: 566 VRDKSHPELEQIYDCLVQL 584
             DKSHP  ++IY  L  L
Sbjct: 567 ADDKSHPLSDKIYAKLEDL 585



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 182/390 (46%), Gaps = 40/390 (10%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S S  L+   K+   + + +  +W     G+  +G+ REA+DL+K+M+   G +PD++  
Sbjct: 157 SGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEM-GVKPDSYFI 215

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C  +G    G  I  ++ ++    + +V   +++++  CG +  A +VFD    
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVE 275

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++V+W+++I G+  + FP+E I LF  M  E ++PD+ +++G +S+CA L  L+LG   
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
              I        + +ANAL+DMY KCG +    E+F  M  K +V     I G AK G +
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                          K + A+F + +  GI PD  T +  L  C
Sbjct: 396 -------------------------------KLSFAVFGQTEKLGISPDGSTFLGLLCGC 424

Query: 323 SQLGALDDGIWIHRFIEKEN----FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-N 377
              G + DG+   RF    +        V     +VD++ + G +  A ++  +MP R N
Sbjct: 425 VHAGLIQDGL---RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPN 481

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           ++ + A++ G  L      A +   E+I +
Sbjct: 482 AIVWGALLSGCRLVKDTQLAETVLKELIAL 511


>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
 gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 408

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 173/396 (43%), Positives = 261/396 (65%)

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           M+  RV PD+V +  ++S CA   +L  G+ IH Y+  S   +   ++ ALM+MY  C  
Sbjct: 1   MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +E AE++++ +  K +V  TTM+ GYAK G ++IA  IF+ +P K VV W+A+I GY ++
Sbjct: 61  MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
            +  EAL LFH+MQ +G+KPD +T +  +SAC+ +GAL+    IH F+E  +    + +G
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            AL+DM++KCG++  AL VF+ MP++N +T+T+II   A+HG    A++ F  M   G+ 
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 240

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P+ +TFLG+L ACCH GLV+EGR  F  M   +R+ P  +HY CMVDLLGR+ LL +A  
Sbjct: 241 PNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAAD 300

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           LI+SM +  +VV+WG+L  ACR+HG++ +G  AA K+LELDP   G  VLL+N+Y +   
Sbjct: 301 LIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGN 360

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           W +  +VR +ME +G  K  GCS +E+NG +++F V
Sbjct: 361 WNDVKEVRGVMEVQGTWKKKGCSWMELNGSVHQFAV 396



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 161/353 (45%), Gaps = 72/353 (20%)

Query: 77  PDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA-- 133
           PD      +   CA +  LRF G  I  ++L     +D  V  A+++++ SC D+ +A  
Sbjct: 8   PDQVIIATVLSTCAHTRNLRF-GKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEK 66

Query: 134 -----------------------------CNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
                                         ++F+    +++VSW+++I G+  S  P EA
Sbjct: 67  LYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEA 126

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF DMQ   V+PDE+TM+ ++SACA +  L   R IH ++    +   +P+ NAL+DM
Sbjct: 127 LNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDM 186

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           + KCG L  A ++F++M  K VV+ T++I   A  G                        
Sbjct: 187 FSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHG------------------------ 222

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                    + AL LF  M++ GI+P+ VT +  L AC   G +++G  + + + ++ + 
Sbjct: 223 -------DGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQ-YR 274

Query: 345 LNVVLG--TALVDMYAKC---GNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           +  +      +VD+  +    G  A  +Q  H  P  N + + +++    +HG
Sbjct: 275 IEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRP--NVVIWGSLLAACRMHG 325



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW+  I G+ E+ K  EA++L+  M R+G  +PD  T   +   CA++G       I   
Sbjct: 109 SWSAMIAGYAESSKPMEALNLFHDMQRSG-VKPDEITMLSVISACANVGALEKARCIHSF 167

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V        + + NA+I +F  CG L LA +VF+    +N+V+W S+I      G  R A
Sbjct: 168 VENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSA 227

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
           + LF +M+ E ++P+ VT +G++ AC     +  GR
Sbjct: 228 LTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGR 263


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 318/584 (54%), Gaps = 49/584 (8%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE-AVDLYKQM 69
           F   +LIA  A S  ++L     +  +V +PN   +N  IR        R    + + QM
Sbjct: 54  FVAPKLIA--AFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQM 111

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
            +NG   PDNFTYP L K C+      L   I  HV K+GF  D++V N++I  +  CG+
Sbjct: 112 QKNG-LFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGN 170

Query: 130 LGL--ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
            GL  A ++F     R++V+WNS+I G VR G  + A +LF +M      PD      MV
Sbjct: 171 AGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEM------PDR----DMV 220

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           S               W              N ++D Y K G++++A E+F+ M  + +V
Sbjct: 221 S---------------W--------------NTMLDGYAKAGEMDTAFELFERMPWRNIV 251

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S +TM+ GY+K G +D+AR +FD  P K VV W  II GY +   ++EA  L+ +M+  G
Sbjct: 252 SWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAG 311

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++PD    +  L+AC++ G L  G  IH  + +  F     +  A +DMYAKCG +  A 
Sbjct: 312 MRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAF 371

Query: 368 QVFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            VF  M  +++ +++ ++I G A+HG    A+  FS M+  G  PD  TF+G+L AC H 
Sbjct: 372 DVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHA 431

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV+EGRKYF  M  ++ + P+++HY CM+DLLGR G L+EA  L+RSMPM  + ++ G 
Sbjct: 432 GLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGT 491

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H +V +      +L +L+P D G Y LL+N+Y  +  W     VR  M+  G 
Sbjct: 492 LLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGG 551

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY---DCLVQLTRH 587
           EK  G SSIEV   ++EF V D+SHP+ + IY   D LVQ  R 
Sbjct: 552 EKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQ 595



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 16/199 (8%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  C+ L +++    IH  + K N + ++ +   L+  ++ C ++A A+ VF+ +P  N 
Sbjct: 28  LHKCTNLDSVNQ---IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84

Query: 379 LTYTAIIGGLALHGKALDAISY--FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
             Y +II   A H  +  ++ +  F +M   GL PD  T+  +L AC     +   R   
Sbjct: 85  HLYNSIIRAHA-HNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIH 143

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGL--LEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           A +  I          S ++D   R G   L+ A  L  +M    DVV W ++     + 
Sbjct: 144 AHVEKIGFYGDIFVPNS-LIDSYSRCGNAGLDGAMSLFLAME-ERDVVTWNSM-----IG 196

Query: 495 GNVSIGE-RAAMKLLELDP 512
           G V  GE + A KL +  P
Sbjct: 197 GLVRCGELQGACKLFDEMP 215


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 306/543 (56%), Gaps = 35/543 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G ++ G   +A+D+  +M R  G + +  T   +  VC  LG       I  +
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEM-RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+K G + D++V NA+I+++   G+L  A   F +  + ++VSWNS+I  + ++  P  A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMD 223
              F  MQL   +PD +T++ + S  AQ  D    R +H +I   G L   V + NA++D
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY                               AK G LD A K+F+ +P K V+ WN +
Sbjct: 462 MY-------------------------------AKLGLLDSAHKVFEIIPVKDVISWNTL 490

Query: 284 IGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY Q   + EA+ ++  M+    I P+  T V  L A + +GAL  G+ IH  + K N
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTN 550

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            +L+V + T L+D+Y KCG +  A+ +F+++P+ +S+T+ AII    +HG A   +  F 
Sbjct: 551 LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFG 610

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM+  G+ PD +TF+ +LSAC H G V+EG+  F  M   + + P LKHY CMVDLLGR+
Sbjct: 611 EMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRA 669

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G LE A   I+ MP+  D  +WGAL  ACR+HGN+ +G+ A+ +L E+D ++ G YVLL+
Sbjct: 670 GYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 729

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y +   WE   KVR +  ERG++KTPG S+IEVN  +  F   ++SHP+ ++IY+ L 
Sbjct: 730 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 789

Query: 583 QLT 585
            LT
Sbjct: 790 VLT 792



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 275/559 (49%), Gaps = 46/559 (8%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + G +   F  +RL+   A     +L  CT     +   + ++WN  I  ++  G   
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCT--FDQIPQKDVYAWNSMISAYVHNGHFH 199

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+  + Q+L     RPD +T+P + K C +L     G +I     KLGF  +++V  ++
Sbjct: 200 EAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNVFVAASL 256

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH++   G  G+A ++FD+   R++ SWN++I+G +++G   +A+ +  +M+LE ++ + 
Sbjct: 257 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNF 316

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT++ ++  C QL D++    IH Y+ + GL   + ++NAL++MY K G LE A + F  
Sbjct: 317 VTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQ 376

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M    VVS                               WN+II  Y Q      A   F
Sbjct: 377 MFITDVVS-------------------------------WNSIIAAYEQNDDPVTAHGFF 405

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAK 359
            +MQ  G +PD +T V   S  +Q     +   +H FI +  + + +VV+G A+VDMYAK
Sbjct: 406 VKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAK 465

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLG 418
            G +  A +VF  +P ++ +++  +I G A +G A +AI  +  M     ++P++ T++ 
Sbjct: 466 LGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 525

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           IL A  H G + +G K   ++     L   +   +C++D+ G+ G L +A  L   +P  
Sbjct: 526 ILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  V W A+     +HG+     +   ++L+  + P D   +V L +    S   EE   
Sbjct: 585 SS-VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP-DHVTFVSLLSACSHSGFVEEGKW 642

Query: 537 VRKMMEERGVE---KTPGC 552
             ++M+E G++   K  GC
Sbjct: 643 CFRLMQEYGIKPSLKHYGC 661



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 105/214 (49%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K+   +   +  SWN  I G+ + G   EA+++YK M       P+  T+  +  
Sbjct: 469 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             A +G    G +I G V+K    +D++V   +I V+  CG L  A ++F +    + V+
Sbjct: 529 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+     G   + ++LF +M  E V+PD VT + ++SAC+    +  G+     + 
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           E G+  ++     ++D+  + G LE A +    M
Sbjct: 649 EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 682


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 297/510 (58%), Gaps = 34/510 (6%)

Query: 77  PDNFTYPLLFKVCASLG--LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
           P + T+P+  K  + L   LR  G ++    LKL    + +V  +++ ++  CG L  A 
Sbjct: 115 PSHLTFPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 173

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VFDE    + VSW +LI  ++ +G  REA+ + R+     + PD  T + +++ACA++ 
Sbjct: 174 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 233

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           DL  G  +     + G+  +V +A A +D+YVKCG++  A                    
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKA-------------------- 273

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                      R++FD + +K  V W A++GGY      +EAL LF  MQA G++PD   
Sbjct: 274 -----------REVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYA 322

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               LSAC++LGALD G    R ++ + F  N VLGTAL+DMYAKCG+ A+A  VF +M 
Sbjct: 323 VAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMR 382

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ + + A+I GL + G    A +   +M   G+  ++ TF+G+L +C H GL+ +GR+
Sbjct: 383 KKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 442

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M+ ++ +SP+++HY C+VDLL R+GLL+EA QLI  MPM A+ V+ GAL   C++H
Sbjct: 443 YFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIH 502

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            N  + E    +L+ L+P +SG YV+L+N+Y +   WE+A K+R  M+E+GVEK P CS 
Sbjct: 503 RNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSW 562

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +E  G ++EF V DKSHP  +QIY  L +L
Sbjct: 563 VEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 592



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 177/380 (46%), Gaps = 34/380 (8%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L    ++   + +P++ SW   I  +++ G +REAV + +    NG  RPD+FT   +  
Sbjct: 169 LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAVRVLT 227

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G  ++    + G    ++V  A + ++V CG++  A  VFD+   ++ V+
Sbjct: 228 ACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA 287

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+  +G PREA+ LF  MQ E V PD   + G +SAC +L  L+LGR+    + 
Sbjct: 288 WGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVD 347

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                    L  AL+DMY KCG    A  +F  M  K ++                    
Sbjct: 348 WDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIV------------------- 388

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA+I G       K A  L  +M+ +G+K +  T +  L +C+  G 
Sbjct: 389 ------------WNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGL 436

Query: 328 LDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           + DG  + H   +  + +  +     +VD+ ++ G + +A Q+  +MP   N++   A++
Sbjct: 437 IQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALL 496

Query: 386 GGLALHGKALDAISYFSEMI 405
           GG  +H  A  A    +++I
Sbjct: 497 GGCKIHRNAELAEHVLTQLI 516



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 136/317 (42%), Gaps = 27/317 (8%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A S  +A  A+    +   +    ++   +++ ++ +W   + G+   G  REA+DL+
Sbjct: 249 GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 308

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN-----AVI 121
             M +  G RPD +        C  LG   LG +    V     D D ++ N     A+I
Sbjct: 309 LAM-QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMV-----DWDEFLDNPVLGTALI 362

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG    A  VF +   ++++ WN++I G   +G  + A  L   M+   V+ ++ 
Sbjct: 363 DMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDN 422

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T IG++ +C     +  GR   H       ++  +     ++D+  + G L+ A ++ D 
Sbjct: 423 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDD 482

Query: 241 M-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKR 292
           M +    V    ++ G       ++A  +   L    + PWN+  G YV          R
Sbjct: 483 MPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR--LEPWNS--GNYVMLSNIYSNRGR 538

Query: 293 SKEALALFHEMQATGIK 309
            ++A  L  +M+  G++
Sbjct: 539 WEDAAKLRLDMKEKGVE 555


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/514 (36%), Positives = 310/514 (60%), Gaps = 38/514 (7%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           DN++  + F   + L    +G ++    +KLG   D +V N++I+++ SC     A  V 
Sbjct: 92  DNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVL 151

Query: 138 DES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           D +    C  + VSWN++I+G++R G P +A++ F  M  E+V  D+VT++  + A A+ 
Sbjct: 152 DSAPQGAC--DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKA 209

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             + +GR  H  +  +G  +   + ++L+ MY KC                         
Sbjct: 210 GKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKC------------------------- 244

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                 G ++ ARK+F  + E+ VV W ++I GY Q  + KEA+ LF +MQ TG+K D  
Sbjct: 245 ------GLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDG 298

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    +S+C+Q+GALD G ++H + +       + +  +L+DMY+KCG+I KA ++F  +
Sbjct: 299 TIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGL 358

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEG 432
            +R+  ++TA+I G  ++G   +A+  F++M G G +MP+E+TFLG+L++C HGGLV++G
Sbjct: 359 TKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQG 418

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
             YF +MS +++L+P+++HY CMVDLLGR+ LL EAEQ I++MP+A DVVVW +L FACR
Sbjct: 419 FHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACR 478

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
             G V + E  A ++LEL+P+    +VLL+N+Y  ++ W +  ++R  M+   + K PGC
Sbjct: 479 ACGEVGLAEFVAERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGC 538

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           S IEV+G ++EF   D+SH E E IY+ L+ ++ 
Sbjct: 539 SFIEVDGCVHEFFAGDESHLETEAIYNILLGISE 572



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 34/335 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SWN  I G+L  G   +A+  + QM++   T  D+ T        A  G   +G   
Sbjct: 160 DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTL-DDVTLLNALVASAKAGKVKVGRLC 218

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+  G  ++ Y+ +++I ++  CG +  A  VF     RN+V W S+I+G+ + G  
Sbjct: 219 HSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKF 278

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EA+ LFRDMQ+  ++ D+ T+  +VS+CAQ+  L+LGR +H Y    GL   + + N+L
Sbjct: 279 KEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSL 338

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG +  A EIF  +  + V S T MI+G+   G                     
Sbjct: 339 IDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGL-------------------- 378

Query: 282 AIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI-WIHRFIE 339
                        EAL LF +M+  G + P+ VT +  L++CS  G ++ G  +  R   
Sbjct: 379 -----------CSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSM 427

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
                  +     +VD+  +   + +A Q    MP
Sbjct: 428 VYKLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMP 462



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 20/256 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N   W   I G+ + GK +EAV+L++ M +  G + D+ T   +   CA +
Sbjct: 252 KVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDM-QITGMKVDDGTIATVVSSCAQM 310

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG  +  +    G   ++ V N++I ++  CGD+  A  +F     R++ SW ++I
Sbjct: 311 GALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMI 370

Query: 153 NGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
            GF  +G   EA+ LF  M+ E +V P+EVT +G++++C+    +  G   H++   S +
Sbjct: 371 MGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQG--FHYFQRMSMV 428

Query: 212 TLTVPLA---NALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMI--------VGYAKF 259
               P       ++D+  +   L  AE+   +M +   VV   +++        VG A+F
Sbjct: 429 YKLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEF 488

Query: 260 GFLDIARKIFDDLPEK 275
               +A +I +  P+K
Sbjct: 489 ----VAERILELEPKK 500



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +++   +I   +   + FSW   I GF   G   EA+DL+ QM   G   P+  T+
Sbjct: 343 SKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTF 402

Query: 83  PLLFKVCASLGLRFLGYEIFGH---VLKLGFDVDMY 115
             +   C+  GL   G+  F     V KL   ++ Y
Sbjct: 403 LGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHY 438


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/507 (37%), Positives = 297/507 (58%), Gaps = 34/507 (6%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           DN++  +     A +    +G +     LKL    D +V NA+I+++ SC     A  V 
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63

Query: 138 DES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           D +     ++VSWN++I G++R G P +A++ F  M  E+V  DEVT++ ++ ACA+   
Sbjct: 64  DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 123

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           + +G   H  +  +G  +   + ++L+ MY KCG +E                       
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEE---------------------- 161

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                    AR++F+ +PE+ VV W ++I G  Q+ R KEA+ LF +MQ  G+K D  T 
Sbjct: 162 ---------ARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATI 212

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              +S+C Q+GALD G ++H + +       + +  +L+DMY+KCG++ KA Q+FH + +
Sbjct: 213 ATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTK 272

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRK 434
           R+  T+T +I G A++G  ++A+  F++M G   +MP+E+ FLG+L+AC HGGLV++G  
Sbjct: 273 RDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYH 332

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F +MS ++ L P+++HY CMVDLLGR+ LL EAEQ I+ MP+A DVVVW +L FACR  
Sbjct: 333 HFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRAS 392

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           G V + E AA ++ +L+P+  G +VLL+N+Y  +  W +   VR  M      K PGCS 
Sbjct: 393 GQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSF 452

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCL 581
           IEV+G ++EF   D+SH E E I + L
Sbjct: 453 IEVDGCIHEFFAGDESHFETEAICNTL 479



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 34/332 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G++  G   +A+  + QM +    R D  T   +   CA  G   +G      
Sbjct: 75  SWNTIIAGYIRGGMPNKALQSFHQMAKEQ-VRLDEVTLLNVLVACARTGAMKVGSLCHAL 133

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+  GF+++ Y+ ++++ ++  CG +  A  VF+    RN+V W S+I G  +SG  +EA
Sbjct: 134 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEA 193

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LFRDMQ+  V+ D+ T+  +VS+C Q+  L+LGR +H Y    GL   + + N+L+DM
Sbjct: 194 VDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDM 253

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG +  A +IF  +  + V + T MI+G+A  G                        
Sbjct: 254 YSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGL----------------------- 290

Query: 285 GGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKEN 342
                     EAL LF +M+    + P+ V  +  L+ACS  G ++ G    HR  +  N
Sbjct: 291 --------CVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 342

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               +     +VD+  +   +A+A Q   +MP
Sbjct: 343 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMP 374



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 2/161 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   N   W   I G  ++G+ +EAVDL++ M +  G + D+ T   +   C  +
Sbjct: 164 RVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDM-QIAGVKADDATIATVVSSCGQM 222

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG  +  +    G   ++ V N++I ++  CGD+  A  +F     R++ +W  +I
Sbjct: 223 GALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMI 282

Query: 153 NGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQ 192
            GF  +G   EA+ LF  M+ E +V P+EV  +G+++AC+ 
Sbjct: 283 MGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 323



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +++   +I   +   + F+W V I GF   G   EA+DL+ QM       P+   +
Sbjct: 255 SKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIF 314

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKL 108
             +   C+  GL   GY  F  + K+
Sbjct: 315 LGVLTACSHGGLVEQGYHHFHRMSKV 340


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/572 (36%), Positives = 320/572 (55%), Gaps = 80/572 (13%)

Query: 1   MTITGLISHGFAPSRLIAFCAISE-SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  T L++H F  SRLIAFC++S  S  LDY + +   +Q+PNSF +   I+GF +T   
Sbjct: 29  MIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNP 88

Query: 60  REAVDLYKQMLR----NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115
            E++ LY +ML     + G     F+ P + K C  L     G ++ G VLK     D +
Sbjct: 89  VESLILYARMLSCLNYSSGV---EFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPF 145

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           V N+++ +++  G++ LA  VFD    R++VSWNS+I G++++G    A  LF +M    
Sbjct: 146 VGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMP--- 202

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
            E D V+                                    NA++D Y KCG+ E AE
Sbjct: 203 -ERDLVS-----------------------------------CNAMIDGYGKCGRCELAE 226

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++F++M +K VV+                               W ++I  YVQ +   +
Sbjct: 227 KVFETMSDKDVVT-------------------------------WTSMISAYVQNRCPMK 255

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGTALV 354
           AL LF EM + G++PD    V  LSA + LG +++G W+H ++      L+   +G+AL+
Sbjct: 256 ALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALI 315

Query: 355 DMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           DMY+KCG I  A  VF  +  R ++  + ++I GLA+HG A +A+  F EM  + + P+E
Sbjct: 316 DMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNE 375

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           ITFLG+LS C HGGLV+EG+ YF  M   +++ P+++HY CM+DL GR+G LE+A  +I+
Sbjct: 376 ITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQ 435

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           +MP  AD++ W A+  A   HG++ IG+ AA++ +EL P DS  YVLL+N+Y  +  W++
Sbjct: 436 NMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDD 495

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
             K+R MM +RGV+K  GCSS+ VBG ++EF+
Sbjct: 496 VAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFL 527


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/598 (33%), Positives = 326/598 (54%), Gaps = 41/598 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD    +L +   PN  +W+  I GF       E+V+L+ +M+   G  PD  T   +  
Sbjct: 220 LDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMV-GAGVAPDARTLASVLP 278

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF---------- 137
            C+ +   F+G E+ G++++     + +V NA++ ++  CGD+  A  +F          
Sbjct: 279 ACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAAS 338

Query: 138 -------------------------DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
                                     E   R+ +SWN +I+G V +    +A+ LFRD+ 
Sbjct: 339 YNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLL 398

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E +EPD  T+  +++  A +  +  G+EIH      GL     +  AL++MY KC  + 
Sbjct: 399 MEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDII 458

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP----EKYVVPWNAIIGGYV 288
           +A+  FD +  +   +   +I GYA+   +   R++ + +     E  V  WN+I+ G V
Sbjct: 459 AAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLV 518

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           + K+   A+ LF+EMQ + ++PD  T    L+ACS+L  +  G  +H +  +  ++ +  
Sbjct: 519 ENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAH 578

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +G  LVDMYAKCG+I    QV++++   N + + A++   A+HG   + I  F  M+   
Sbjct: 579 IGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSR 638

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           + PD +TFL +LS+C H G +  G + F  M + + ++P LKHY+CMVDLL R+G L+EA
Sbjct: 639 VRPDHVTFLSVLSSCVHAGSIKIGYECFYLMET-YNITPTLKHYTCMVDLLSRAGKLDEA 697

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528
            QLI++MPM AD V W AL   C +H  V++GE AA KL+EL+P ++G YVLLAN+Y  +
Sbjct: 698 YQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASA 757

Query: 529 NMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             W +  K R++M ++G++K+PGCS IE    ++ F+  DKSH  +E+IY  L  LT+
Sbjct: 758 GRWHDLAKTRELMNDKGMQKSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLDNLTK 815



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 159/569 (27%), Positives = 260/569 (45%), Gaps = 81/569 (14%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG  +H F  ++L+   +I+ S   +    +   +   N  SW   +R  L  G   +  
Sbjct: 60  TGFYNHNFVQTKLLQMYSINSS--FEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGF 117

Query: 64  DLYKQMLRNG-GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            L+++ L +G G + D F +P++  +C  LG   LG ++ G VLK GF  ++YV NA+I 
Sbjct: 118 MLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALID 177

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG L  A  V +    ++ VSWNS+I   V +G   EA+ L  +M L  +EP+ VT
Sbjct: 178 MYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVT 237

Query: 183 -----------------------MIG------------MVSACAQLEDLNLGREIHWYIS 207
                                  M+G            ++ AC++++ L +G+E+H YI 
Sbjct: 238 WSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIV 297

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
              L     +ANAL+ MY +CG ++SA +IF     K   S  TMIVGY + G +  A++
Sbjct: 298 RHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKE 357

Query: 268 IFDDLPEKYV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
           +F  + ++ V    + WN +I G+V      +AL LF ++   GI+PD+ T    L+  +
Sbjct: 358 LFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFA 417

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            +  +  G  IH     +    N  +G ALV+MY KC +I  A   F E+ ER++ T+ A
Sbjct: 418 DMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNA 477

Query: 384 IIGGLA----------------------------------LHGKALD-AISYFSEMIGVG 408
           +I G A                                  +  K  D A+  F+EM    
Sbjct: 478 LISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSS 537

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY-SCMVDLLGRSGLLEE 467
           L PD  T   IL+AC     +  G++  A   SI        H  + +VD+  + G ++ 
Sbjct: 538 LRPDIYTVGIILAACSKLATIHRGKQVHAY--SIRAGYDSDAHIGATLVDMYAKCGSIKH 595

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHGN 496
             Q+   +    ++V   A+  A  +HG+
Sbjct: 596 CYQVYNKIS-NPNLVCHNAMLTAYAMHGH 623



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 223/492 (45%), Gaps = 38/492 (7%)

Query: 75  TRPDNF-----------TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           T+P NF           TY  + +   SL L   G ++  H +K GF    +V   ++ +
Sbjct: 19  TKPPNFSLLHTPPLTSTTYSTILQSSNSLTL---GKQLHSHSIKTGFYNHNFVQTKLLQM 75

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV--EPDEV 181
           +        A ++FD+  ++NL SW +++   +  G   +   LF +   + +  + D  
Sbjct: 76  YSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFF 135

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
               +++ C  L DL LGR++H  + + G    V + NAL+DMY KCG L+ A+++ + M
Sbjct: 136 VFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGM 195

Query: 242 VNKTVVSCTTMIVGYAKFGF----LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
             K  VS  ++I      G     LD+   +     E  VV W+A+IGG+       E++
Sbjct: 196 TQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESV 255

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF  M   G+ PDA T    L ACS++  L  G  +H +I +     N  +  ALV MY
Sbjct: 256 ELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMY 315

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
            +CG++  A ++F +   + + +Y  +I G   +G    A   F +M   G+  D I++ 
Sbjct: 316 RRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWN 375

Query: 418 GILSACCHGGLVDEGRKYFAQM------SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
            ++S      + D+    F  +         F L   L  ++ M  +  R G  +E   +
Sbjct: 376 CMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCI--RQG--KEIHSI 431

Query: 472 IRSMPMAADVVVWGALF-FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
                + ++  V GAL    C+ +  ++    A M   E+  +D+  +  L + Y   N 
Sbjct: 432 AIVKGLQSNSFVGGALVEMYCKCNDIIA----AQMAFDEISERDTSTWNALISGYARCN- 486

Query: 531 WEEAGKVRKMME 542
             + GK+R+++E
Sbjct: 487 --QIGKIRELVE 496


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 344/635 (54%), Gaps = 59/635 (9%)

Query: 1   MTITGLISHGFAPSRLIA----FCAISESKNLDYCTKILFNVQNPNSFS----WNVAIRG 52
           + +TG     F  +R+++    F  +S+++ +       F V     FS    WN  +R 
Sbjct: 57  IIVTGSHRSAFLAARVVSVYAGFGLVSDAQRV-------FEVSPIECFSNLLLWNSILRA 109

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
            +  G   EA+++Y +M R  G   D FT+PL+ + CA +G R L   + GHV+++GF  
Sbjct: 110 NVAHGYCEEALEIYCRM-RKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +++V N ++ ++   G +  A  VF+   VR+ VSWN++++G+  +     A  +FR M 
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 228

Query: 173 LERVEPDEVTMIGMVSA---CAQ--------------------------------LEDLN 197
              +EP+ VT   ++S+   C Q                                L   +
Sbjct: 229 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFD 288

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G+ IH Y+ + G    + + N+L+ +Y K G + +A  +F  +  K +VS   +I  YA
Sbjct: 289 EGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYA 348

Query: 258 KFGFLDIARKIF------DDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
             G+ D A  IF      D+ P     VV W+A+IGG+    + +EAL LF  MQ   +K
Sbjct: 349 DLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVK 408

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            ++VT    LS C++L AL  G  IH  + +   + N+++G  L++MY K G+  +   V
Sbjct: 409 ANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLV 468

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F ++  ++ +++  ++ G  +HG   +AI  F +MI  G  PD +TF+ +LSAC H GLV
Sbjct: 469 FEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLV 528

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            EGR+ F +M   FR+ P+++HY+CMVDLLGR+GLL+EA ++++SMP+  +  VWGAL  
Sbjct: 529 AEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 588

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           +CR+H N  + E  A ++  L+ + +G Y+LL+N+Y  S  WE++ KVR   + +G++KT
Sbjct: 589 SCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKT 648

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           PG S I+V   +Y F   +  H ELE++Y  L  L
Sbjct: 649 PGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDL 683



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 199/474 (41%), Gaps = 51/474 (10%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           +P+N        +        L  +I   ++  G     ++   V+ V+   G +  A  
Sbjct: 28  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 87

Query: 136 VFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           VF+ S   C  NL+ WNS++   V  G+  EA+ ++  M+   V  D  T   ++ ACA 
Sbjct: 88  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACAL 147

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           +    L R +H ++ E G    + + N LM MY K G+++ A ++F+ M  ++ VS  TM
Sbjct: 148 MGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTM 207

Query: 253 IVGYAK----FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
           + GYA      G  ++ R +     E  +V W +++  + +  +  E + LF  M+  GI
Sbjct: 208 VSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGI 267

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
              A      LS    L A D+G  IH ++ K  F   + +  +L+ +Y K GN+  A  
Sbjct: 268 GATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARI 327

Query: 369 VFHEMPER---------------------------------------NSLTYTAIIGGLA 389
           +F E+  +                                       N ++++A+IGG A
Sbjct: 328 LFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFA 387

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             G+  +A+  F  M    +  + +T   +LS C     +  GR+    +     +   +
Sbjct: 388 SKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNI 446

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
              + ++++  +SG  +E   +   +    D++ W  +     +HG   +GE A
Sbjct: 447 LVGNGLINMYTKSGSFKEGNLVFEKIE-NKDLISWNTMVAGYGIHG---LGENA 496


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/486 (38%), Positives = 287/486 (59%), Gaps = 9/486 (1%)

Query: 105 VLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           +LK G   V  ++  A++  + + G    A  +FDE   + LV   ++    V SG   +
Sbjct: 36  LLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQ 95

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSAC----AQLEDLNLGREIHWYISESGLTLTVPLAN 219
           AI +F DM  + V PD V +   + AC    +     N G++IH  I  SG+   V ++ 
Sbjct: 96  AIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVST 155

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+ +Y +CGKL  +  +FD M +++ ++   M+  YA+ G +D A ++F  +P + VV 
Sbjct: 156 ELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVS 215

Query: 280 WNAIIGGYVQAKRSKEALALFHEM---QATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           WN ++ GY  A R +EAL LF +M    +  + P+  T    L AC+  G L+ GIW+H 
Sbjct: 216 WNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHA 275

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKAL 395
           +IE+   N +  L   L+DMY KCG+I  ALQVF + P +  L ++T +I GLA+HG+A 
Sbjct: 276 YIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRAT 335

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           DA+  F  M   G+ PD++T +G+L+AC HGGLVDEG  YF  M + FR++PK++HY CM
Sbjct: 336 DALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 395

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           +DLLGR G L+EA  +IR+MPM  + V+WGA   AC++HGN+ +G+ AA +L  LDP D 
Sbjct: 396 IDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDP 455

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
              V+L++MY  +  W    + R+ M    V+KTPGCSSIE+ G ++EF+     HP+  
Sbjct: 456 WGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYA 515

Query: 576 QIYDCL 581
           +I   L
Sbjct: 516 EICSVL 521



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 163/383 (42%), Gaps = 71/383 (18%)

Query: 51  RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG----LRFLGYEIFGHVL 106
           R  + +G+  +A+ ++  M+ +G   PDN    +    C   G     R  G +I   ++
Sbjct: 85  RAHVASGQAAQAIAVFGDMVADG-VFPDNVALAVALGACHGAGSWTARRNPGKKIHALIV 143

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG------- 159
             G + D++V   +I V+  CG L ++  VFD+   R+ ++WN++++ + R G       
Sbjct: 144 TSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYE 203

Query: 160 ----FP--------------------REAIRLFRDMQLER---VEPDEVTMIGMVSACAQ 192
                P                    REA+ LFR M       V P+  TM  ++ ACA 
Sbjct: 204 LFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAG 263

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
              L  G  +H YI  + +     L   L+DMY KCG +++A ++F+    K        
Sbjct: 264 AGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRK-------- 315

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
                        R +F          W  +I G     R+ +AL +F  MQ  GI PD 
Sbjct: 316 -------------RDLFS---------WTTVICGLAMHGRATDALRMFDMMQDNGICPDD 353

Query: 313 VTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           VT V  L+AC+  G +D+G+ + +    K      +     ++D+  + G + +A  +  
Sbjct: 354 VTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIR 413

Query: 372 EMP-ERNSLTYTAIIGGLALHGK 393
            MP + N++ + A +    +HG 
Sbjct: 414 TMPMDPNTVIWGAFLSACKVHGN 436



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 10/222 (4%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG--GTRPDNFTYPL 84
            +D   ++   +   +  SWN  + G+   G+ REA+ L++QM+        P+  T   
Sbjct: 197 KVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMST 256

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VR 143
           +   CA  G    G  +  ++ +   + D Y+   +I ++  CG +  A  VF+++   R
Sbjct: 257 ILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKR 316

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDLNLGRE 201
           +L SW ++I G    G   +A+R+F  MQ   + PD+VT++G+++ACA   L D  LG  
Sbjct: 317 DLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLG-- 374

Query: 202 IHWYISESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM 241
            ++Y  E+   +T  + +   ++D+  + G+L+ A  +  +M
Sbjct: 375 -YFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTM 415


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 297/510 (58%), Gaps = 34/510 (6%)

Query: 77  PDNFTYPLLFKVCASLG--LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
           P + T+P+  K  + L   LR  G ++    LKL    + +V  +++ ++  CG L  A 
Sbjct: 68  PSHLTFPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 126

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VFDE    + VSW +LI  ++ +G  REA+ + R+     + PD  T + +++ACA++ 
Sbjct: 127 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 186

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           DL  G  +     + G+  +V +A A +D+YVKCG++  A                    
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKA-------------------- 226

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                      R++FD + +K  V W A++GGY      +EAL LF  MQA G++PD   
Sbjct: 227 -----------REVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYA 275

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               LSAC++LGALD G    R ++ + F  N VLGTAL+DMYAKCG+ A+A  VF +M 
Sbjct: 276 VAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMR 335

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ + + A+I GL + G    A +   +M   G+  ++ TF+G+L +C H GL+ +GR+
Sbjct: 336 KKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 395

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M+ ++ +SP+++HY C+VDLL R+GLL+EA QLI  MPM A+ V+ GAL   C++H
Sbjct: 396 YFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIH 455

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            N  + E    +L+ L+P +SG YV+L+N+Y +   WE+A K+R  M+E+GVEK P CS 
Sbjct: 456 RNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSW 515

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +E  G ++EF V DKSHP  +QIY  L +L
Sbjct: 516 VEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 545



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 177/380 (46%), Gaps = 34/380 (8%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L    ++   + +P++ SW   I  +++ G +REAV + +    NG  RPD+FT   +  
Sbjct: 122 LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAVRVLT 180

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G  ++    + G    ++V  A + ++V CG++  A  VFD+   ++ V+
Sbjct: 181 ACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA 240

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+  +G PREA+ LF  MQ E V PD   + G +SAC +L  L+LGR+    + 
Sbjct: 241 WGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVD 300

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                    L  AL+DMY KCG    A  +F  M  K ++                    
Sbjct: 301 WDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIV------------------- 341

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA+I G       K A  L  +M+ +G+K +  T +  L +C+  G 
Sbjct: 342 ------------WNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGL 389

Query: 328 LDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           + DG  + H   +  + +  +     +VD+ ++ G + +A Q+  +MP   N++   A++
Sbjct: 390 IQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALL 449

Query: 386 GGLALHGKALDAISYFSEMI 405
           GG  +H  A  A    +++I
Sbjct: 450 GGCKIHRNAELAEHVLTQLI 469



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 136/317 (42%), Gaps = 27/317 (8%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A S  +A  A+    +   +    ++   +++ ++ +W   + G+   G  REA+DL+
Sbjct: 202 GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN-----AVI 121
             M +  G RPD +        C  LG   LG +    V     D D ++ N     A+I
Sbjct: 262 LAM-QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMV-----DWDEFLDNPVLGTALI 315

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG    A  VF +   ++++ WN++I G   +G  + A  L   M+   V+ ++ 
Sbjct: 316 DMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDN 375

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T IG++ +C     +  GR   H       ++  +     ++D+  + G L+ A ++ D 
Sbjct: 376 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDD 435

Query: 241 M-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKR 292
           M +    V    ++ G       ++A  +   L    + PWN+  G YV          R
Sbjct: 436 MPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR--LEPWNS--GNYVMLSNIYSNRGR 491

Query: 293 SKEALALFHEMQATGIK 309
            ++A  L  +M+  G++
Sbjct: 492 WEDAAKLRLDMKEKGVE 508


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 318/582 (54%), Gaps = 30/582 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM----------------- 69
           ++D    + F+++ P+ F WN  I G+ +     +A+ ++ +M                 
Sbjct: 196 DVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQ 255

Query: 70  -------------LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
                        + N G  P+  TY  +   CAS      G  +   +L++   +D+  
Sbjct: 256 HGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVF 315

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N +I ++  CG L LA  VF      + +SWNSLI G V  G   +A+ LF  M+   V
Sbjct: 316 GNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSV 375

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
             DE  +  ++  C+  +  + G  +H Y  +SG+  + P+ NA++ MY KCG  + A+ 
Sbjct: 376 VLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADL 435

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  +  +S T MI  +++ G +  AR  FD +PE+ +V WN+++  YVQ   S+E 
Sbjct: 436 VFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEG 495

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L L+  M++ G++PD +T    + AC+ L  +  G+ +     K   +LNV +  ++V M
Sbjct: 496 LKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM 555

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y++CG I +A   F  + +++ +++ A++   A +G  +  I  F +M+     P+ I++
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISY 615

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + +LS C H GLV EG+ YF  M+ +F +SP  +H+SCMVDLLGR+GLLE+A+ LI  MP
Sbjct: 616 VSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMP 675

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
              +  VW AL  +CR+H ++ + E AA KL+ELD + S  YVLL+NMY +S   +    
Sbjct: 676 FKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVAD 735

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +RK+M+ +G+  + GCS IEV+  ++ F V + SHP+++++Y
Sbjct: 736 MRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVY 777



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/523 (25%), Positives = 220/523 (42%), Gaps = 98/523 (18%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN---GGTRPDNFTYPLLFKVCASLGL 94
           V+  +S SW   I G+ + G    + + +  M+R+   GG   D F++  + K C SLG 
Sbjct: 102 VRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGD 161

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL---------------------- 132
             L  ++   V KLGF ++  + N+V+ ++V CGD+ L                      
Sbjct: 162 SRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYG 221

Query: 133 ---------ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
                    A  +F+    R+ VSWN+LI+ F + GF  + + +F +M  +   P+ +T 
Sbjct: 222 YSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTY 281

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++SACA   DL  G  +H  I     +L +   N L+DMY KCG L+ A+ +F S+  
Sbjct: 282 GSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLRE 341

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
              +S  ++I G   FG                                 ++AL LF++M
Sbjct: 342 HDHISWNSLITGVVHFGL-------------------------------GEDALILFNQM 370

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           + + +  D       L  CS       G  +H +  K     +  +G A++ MYAKCG+ 
Sbjct: 371 RRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDT 430

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS--------------------- 402
            KA  VF  MP RN++++TA+I   +  G    A  YF                      
Sbjct: 431 DKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNG 490

Query: 403 ----------EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
                      M   G+ PD ITF   + AC    +V  G +     +  F LS  +   
Sbjct: 491 FSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK-FGLSLNVSVA 549

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           + +V +  R GL++EA+    S+    D++ W A+  A   +G
Sbjct: 550 NSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNAMLAAFAQNG 591



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 213/453 (47%), Gaps = 35/453 (7%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVR--NLVSWNSLINGFVRSGFPREAIRLF-- 168
           +++  N +I   VS   +  A  +FDE  VR  + VSW ++I+G+ ++GF   +   F  
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 169 --RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
             RD        D  +   ++ AC  L D  L  ++H  +S+ G  +   + N+++ MYV
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KCG ++ AE +F  +   ++    +MI GY++      A +IF+ +PE+  V WN +I  
Sbjct: 193 KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISI 252

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           + Q     + LA+F EM   G  P+ +T    LSAC+    L  G  +H  I +   +L+
Sbjct: 253 FSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLD 312

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           +V G  L+DMYAKCG +  A +VF  + E + +++ ++I G+   G   DA+  F++M  
Sbjct: 313 LVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRR 372

Query: 407 VGLMPDEITFLGILSACC-----------HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
             ++ DE     IL  C            HG  +  G    A +             + +
Sbjct: 373 SSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVG------------NAI 420

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           + +  + G  ++A+ + R MP+  + + W A+  A    G++      A    ++ P+ +
Sbjct: 421 ITMYAKCGDTDKADLVFRLMPL-RNTISWTAMITAFSRSGDIG----KARGYFDMMPERN 475

Query: 516 GI-YVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
            + +  + + Y  +   EE  K+   M   GV+
Sbjct: 476 IVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ 508



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 43/330 (13%)

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           ++ R++H  +  SGL  ++ L N L+ MY  CG    A ++F    ++ + +  TMI   
Sbjct: 25  HIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRAL 84

Query: 257 AKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQ---AKRSKEALAL-FHEMQATGIKP 310
                +  A K+FD++P   K  V W  +I GY Q     RS E  +L   +    G   
Sbjct: 85  VSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNY 144

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA------ 364
           D  +    + AC  LG     I +H  + K  F +   +  ++V MY KCG++       
Sbjct: 145 DPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF 204

Query: 365 -------------------------KALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
                                    KALQ+F+ MPER+ +++  +I   + HG  +  ++
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL--SPKLKHYSCMVD 457
            F EM   G  P+ +T+  +LSAC     +  G    A+   I R+  S  L   + ++D
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHAR---ILRMEHSLDLVFGNGLID 321

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +  + G L+ A+++ +S+    D + W +L
Sbjct: 322 MYAKCGCLDLAKRVFKSLR-EHDHISWNSL 350


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/491 (38%), Positives = 294/491 (59%), Gaps = 4/491 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFV--SCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           ++  H++     +D +    +I +F   S  D+  A  +F     R    WN++I  FV 
Sbjct: 28  QMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVE 87

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
                 A+ L+++M      P+  T   ++ AC   ++  +G   H  + + G      +
Sbjct: 88  KNENATALSLYKNMLQTGFLPNNYTFSFVLRACT--DNSPVGLASHAQVIKLGWESYDFV 145

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N L+ +Y     +E+A ++FD    + V++ T +I GY K G ++ AR++FD +PE+  
Sbjct: 146 LNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNE 205

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V W+A+I GYV     +EAL LF+++Q TG++P+    V  L+ACS LG+LD G WIH +
Sbjct: 206 VSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAY 265

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           +++    L+ VLGTALVDMYAKCG I  A  VF +MP++++  +T++I GLA HG++ DA
Sbjct: 266 VDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADA 325

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           I  F  M    ++P+E+TF+ +LSAC   GLVDEG + F  MS ++ + P ++HY CMVD
Sbjct: 326 IQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVD 385

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+GLLEEA++L+R MPM  D  V GAL  +CR+HG+V +G+     L+E      G+
Sbjct: 386 LLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHGGV 445

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +VLL+NMY  SN W+   KVRK M  + V+K PGCSSIE++G + EFI  D S+  +E +
Sbjct: 446 HVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDGSVSEFIAGDMSYLRVEDV 505

Query: 578 YDCLVQLTRHF 588
              L+ +  H 
Sbjct: 506 MLVLLGIDNHL 516



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 207/423 (48%), Gaps = 83/423 (19%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           FA  ++I+  A+S + ++ +  K+  ++ +  +F WN  IR F+E  +   A+ LYK ML
Sbjct: 43  FAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNML 102

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           + G   P+N+T+  + + C       +G      V+KLG++   +V N +IH++ +   +
Sbjct: 103 QTG-FLPNNYTFSFVLRACTDNSP--VGLASHAQVIKLGWESYDFVLNGLIHLYANWSSV 159

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSG-----------FP------------------ 161
             A  +FD S  R++++W +LING+V+SG            P                  
Sbjct: 160 EAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMG 219

Query: 162 --REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             REA+ LF D+QL  + P+   ++G ++AC+ L  L+ GR IH Y+  +G  L   L  
Sbjct: 220 MFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGT 279

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+DMY KCG +E A  +F+ M +K   + T++I G A  G                   
Sbjct: 280 ALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHG------------------- 320

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                       +S +A+ LF  MQ+  + P+ VT +  LSACS++G +D+G+ I     
Sbjct: 321 ------------QSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRI----- 363

Query: 340 KENFN-LNVVLGT--------ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLA 389
              FN ++VV G          +VD+  + G + +A ++  EMP E +S    A++    
Sbjct: 364 ---FNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCR 420

Query: 390 LHG 392
           +HG
Sbjct: 421 VHG 423


>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
 gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 314/565 (55%), Gaps = 34/565 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S NLD   K+   +      S+   I GF++     EA+ +YK+M R+ G  P+  T  
Sbjct: 7   KSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEM-RSVGVVPNEVTMA 65

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +   C  +G  +    + G V+K+ FD  + V   +++++ +   LG A  +FDE   +
Sbjct: 66  SVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFDEMQEK 125

Query: 144 NLVSWNSLINGFVRSGFP-------------------------------REAIRLFRDMQ 172
           N+VSWN ++NG+ ++GF                                REA+ ++R M 
Sbjct: 126 NVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMMYRLMV 185

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              + P EVTMI ++SAC +   +  G+++H  + ++       +   ++  Y  CG++ 
Sbjct: 186 STGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSACGRIN 245

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A    +  +   V S   +I G+ +   +D AR++F+++PE+ V  W+ +I GY Q+ +
Sbjct: 246 EACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQ 305

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
              AL LFH M  +GI+P+ VT V   SA + LG L +G W H ++   +  LN  L  +
Sbjct: 306 PGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSAS 365

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           ++DMYAKCG+I  AL+VF+++ ++ S    +  II GLA HG A  ++  +S++    + 
Sbjct: 366 IIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIK 425

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
              ITF+G+LSACCH GLV  G+ YF  M S + + P ++HY CMVDLLG++G LEE E+
Sbjct: 426 LSAITFIGVLSACCHAGLVGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKAGRLEEVEE 485

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           LIRSMPM ADVV+WG L  AC+ H N++IGERAA  L +LDP      +LL+N+Y D   
Sbjct: 486 LIRSMPMKADVVIWGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLYADVGR 545

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSI 555
           WE+A  VR++M+   + + PG S +
Sbjct: 546 WEDAFLVRRVMQSHRMHRLPGYSGV 570



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 209/414 (50%), Gaps = 37/414 (8%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I  +V  G+L  A  +F+    +  VS+ ++I GFV++ F  EAI+++++M+   V P+
Sbjct: 1   MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN 60

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           EVTM  ++SAC ++  +   R +H  + +      V ++  L++MY     L  A  +FD
Sbjct: 61  EVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFD 120

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M  K VVS   M+ GY+K GF ++A+++F+ +P+K +V W  II GYV+ +R +EAL +
Sbjct: 121 EMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMM 180

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           +  M +TG+ P  VT +  +SAC +  A+ +G  +H  + K +F+    +   ++  Y+ 
Sbjct: 181 YRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSA 240

Query: 360 CGNIA-------------------------------KALQVFHEMPERNSLTYTAIIGGL 388
           CG I                                +A ++F+EMPER+  +++ +I G 
Sbjct: 241 CGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGY 300

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIFRLS 446
               +   A+  F  M+  G+ P+E+T + + SA    G + EGR    +   +SI  L+
Sbjct: 301 TQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSI-PLN 359

Query: 447 PKLKHYSCMVDLLGRSGLLEEA-EQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
             L   + ++D+  + G +  A E   +    A+ V  W  +      HG+  +
Sbjct: 360 DNLS--ASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKL 411


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 325/575 (56%), Gaps = 20/575 (3%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILF-----------NVQNPNSFSWNVAIRG 52
           TG I +    +R++   A S    L    + +F           NV++P  F WN  I+ 
Sbjct: 40  TGFIKNTNLTTRIVLAFAASRRSYLAEFARCVFHEYHVSSXXSGNVEDP--FLWNAVIKS 97

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
                + R+A+ L+  ML+NG    D F+  L+ K C+ LG    G +  G + K G   
Sbjct: 98  HSHGVEPRKALLLFFLMLKNG-VSVDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWS 156

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+++ N +I +++ CG LG A  VFD    R+ VS+NS+I+G+V+ G    A  LF  M 
Sbjct: 157 DLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMP 216

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            E+   + ++   M++  AQ  D   G +I   + +      +   N+L+D YVK G++E
Sbjct: 217 SEK--KNLISWNSMINGYAQRAD---GVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIE 271

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A+++FD M  + VV+  TM+ GYAK GF+  A+ +FD +P++ VV +N+++ GYVQ + 
Sbjct: 272 DAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRY 331

Query: 293 SKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             EA+ +F++M+  + + PD  T V  LSA +QLG L   + +H +  ++ F L   LG 
Sbjct: 332 HMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGV 391

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DMY+KCG+I +A+ VF  +  ++   + A+IGGLA+HG    A     ++    + P
Sbjct: 392 ALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKP 451

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D+ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+ L
Sbjct: 452 DDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNL 511

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           I  MP+  + V+W     AC  H     GE  A  L+     +   YVLL+NMY    MW
Sbjct: 512 IEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMW 571

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +E  +VR MM+ER ++K PGCS IE++G ++EF V
Sbjct: 572 KEVRRVRTMMKERKIQKIPGCSWIELDGSVHEFFV 606


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 306/573 (53%), Gaps = 68/573 (11%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           PN  SW   I G  + G   EA+ ++++M+  G  +P++ T       C +L L   G E
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-VKPNSITIASAVSACTNLSLLRHGRE 383

Query: 101 IFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           I G+ +K+   D D+ V N+++  +  C  + +A   F      +LVSWN+++ G+   G
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVS------------------------------- 188
              EAI L  +M+ + +EPD +T  G+V+                               
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 189 ----ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
               AC Q+ +L LG+EIH Y+  + + L+  + +AL+ MY  C  LE            
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLE------------ 551

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             V+C+                 +F +L  + VV WN+II    Q+ RS  AL L  EM 
Sbjct: 552 --VACS-----------------VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMN 592

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
            + ++ + VT V  L ACS+L AL  G  IH+FI +   +    +  +L+DMY +CG+I 
Sbjct: 593 LSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 652

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           K+ ++F  MP+R+ +++  +I    +HG  +DA++ F +   +GL P+ ITF  +LSAC 
Sbjct: 653 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 712

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GL++EG KYF  M + + + P ++ Y+CMVDLL R+G   E  + I  MP   +  VW
Sbjct: 713 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 772

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           G+L  ACR+H N  + E AA  L EL+PQ SG YVL+AN+Y  +  WE+A K+R +M+ER
Sbjct: 773 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 832

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           GV K PGCS IEV   L+ F+V D SHP +EQI
Sbjct: 833 GVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 865



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 135/576 (23%), Positives = 260/576 (45%), Gaps = 91/576 (15%)

Query: 1   MTITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           + + G+    F  SRL+  +C   ++  ++   ++   +   N FSW   +  +   G  
Sbjct: 115 LVVNGVDVCEFLGSRLLEVYC---QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDY 171

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            E + L+  M+ N G RPD+F +P +FK C+ L    +G +++ ++L +GF+ +  V  +
Sbjct: 172 EETIKLFYLMV-NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGS 230

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ +F+ CG + +A   F+E   +++  WN +++G+   G  ++A++   DM+L  V+PD
Sbjct: 231 ILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPD 290

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA---NALMDMYVKCGKLESAEE 236
           +VT   ++S  AQ        +  +++   GL    P      AL+    + G    A  
Sbjct: 291 QVTWNAIISGYAQSGQFEEASK--YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALS 348

Query: 237 IFDSMV-----------NKTVVSCTT-----------------------MIVG------Y 256
           +F  MV              V +CT                        ++VG      Y
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT-- 314
           AK   +++AR+ F  + +  +V WNA++ GY      +EA+ L  EM+  GI+PD +T  
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468

Query: 315 --------------------TVH-------------CLSACSQLGALDDGIWIHRFIEKE 341
                                +H              L+AC Q+  L  G  IH ++ + 
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRN 528

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           +  L+  +G+AL+ MY+ C ++  A  VF E+  R+ + + +II   A  G++++A+   
Sbjct: 529 HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 588

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLL 459
            EM    +  + +T +  L AC     + +G++       I R      ++  + ++D+ 
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH---QFIIRCGLDTCNFILNSLIDMY 645

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           GR G ++++ ++   MP   D+V W  +     +HG
Sbjct: 646 GRCGSIQKSRRIFDLMPQ-RDLVSWNVMISVYGMHG 680



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 198/411 (48%), Gaps = 43/411 (10%)

Query: 75  TRPDNFT--YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           T PD     Y  + + C  L    LG+++   ++  G DV  ++ + ++ V+   G +  
Sbjct: 83  TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FD+   RN+ SW +++  +   G   E I+LF  M  E V PD      +  AC++
Sbjct: 143 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 202

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L++  +G++++ Y+   G      +  +++DM++KCG+++ A   F+ +  K V     M
Sbjct: 203 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 262

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGYVQAKRSK-------------- 294
           + GY   G    A K   D+    V P    WNAII GY Q+ + +              
Sbjct: 263 VSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKD 322

Query: 295 ----------------------EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EAL++F +M   G+KP+++T    +SAC+ L  L  G 
Sbjct: 323 FKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382

Query: 333 WIHRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            IH + I+ E  + ++++G +LVD YAKC ++  A + F  + + + +++ A++ G AL 
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           G   +AI   SEM   G+ PD IT+ G+++     G      ++F +M S+
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM 493



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 41/342 (11%)

Query: 142 VRNLVSWNSLINGFV------RSGFPREAIRLFRDMQLERVEPDEVTMI--GMVSACAQL 193
           +R L +    I GF       R+G    A  L   M L    PDE   I   ++  C +L
Sbjct: 45  LRKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDL--TNPDECIEIYASILQKCRKL 102

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            +L LG ++H  +  +G+ +   L + L+++Y + G +E A  +FD M            
Sbjct: 103 YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM------------ 150

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                               E+ V  W AI+  Y      +E + LF+ M   G++PD  
Sbjct: 151 -------------------SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHF 191

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
                  ACS+L     G  ++ ++    F  N  +  +++DM+ KCG +  A + F E+
Sbjct: 192 VFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 251

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             ++   +  ++ G    G+   A+   S+M   G+ PD++T+  I+S     G  +E  
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           KYF +M  +    P +  ++ ++    ++G   EA  + R M
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 21/251 (8%)

Query: 296 ALALFHEMQATGIKPDAVTTVHC--LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
           A  L   M  T   PD    ++   L  C +L  L  G  +H  +     ++   LG+ L
Sbjct: 73  AAMLLSSMDLT--NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRL 130

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           +++Y + G +  A ++F +M ERN  ++TAI+      G   + I  F  M+  G+ PD 
Sbjct: 131 LEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDH 190

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
             F  +  AC        G+  +  M SI F  +  +K    ++D+  + G ++ A +  
Sbjct: 191 FVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK--GSILDMFIKCGRMDIARRFF 248

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGER-------AAMKLLELDPQDSGIYVLLANMY 525
             +    DV +W  +     + G  S GE        + MKL  + P D   +  + + Y
Sbjct: 249 EEIEF-KDVFMWNIM-----VSGYTSKGEFKKALKCISDMKLSGVKP-DQVTWNAIISGY 301

Query: 526 RDSNMWEEAGK 536
             S  +EEA K
Sbjct: 302 AQSGQFEEASK 312


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/593 (34%), Positives = 327/593 (55%), Gaps = 53/593 (8%)

Query: 6   LISHGF------APSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           +I+HGF      AP+ + ++  +   K + +   +  +  +P    WN   RG+      
Sbjct: 90  IITHGFQYNGYVAPNVVTSWVGL---KQMAHARHLFDHFPDPKVELWNAISRGYFHNAFY 146

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           RE V L+ +M ++   RP+ FT+PL+ K CA +G    G EI   V+K G + + +V   
Sbjct: 147 REVVFLFGKM-KSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATT 205

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I V+     +G A  +F     RN+V+W S+I+G++       A RLF D+  ER    
Sbjct: 206 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLF-DLAPER---- 260

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
                                              V L N ++  Y++ G +++A ++FD
Sbjct: 261 ----------------------------------DVVLWNIMVSGYIEIGDMKAARKLFD 286

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           +M  +  +S  TM+ GYA  G ++   ++F+++PE+ V  WN +IGGY       E L  
Sbjct: 287 TMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRC 346

Query: 300 FHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           F  M   G + P+  T V  LSAC++LGALD G W+H +     F  ++ +G AL+DMY+
Sbjct: 347 FKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYS 406

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG I  A++VF  M  ++ +T+ ++I GLA HG   DA++ F +M   G  PD ITF+G
Sbjct: 407 KCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIG 466

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L +C H GLV+EG  YF  M + + ++P+++HY CMVDL GR+GLL+ A + ++ MPM 
Sbjct: 467 VLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPME 526

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
           AD V+W AL  ACR++ N+ + E A  KL+ L+P++   YVLL+N+Y D   W++  +++
Sbjct: 527 ADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLK 586

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC---LVQLTRHF 588
            +M + G +K PGCS IEVN  + EF   D+ H + ++IY     L++L R F
Sbjct: 587 ILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSF 639



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 195/413 (47%), Gaps = 47/413 (11%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L + C ++ L     ++   ++  GF  + YV   V+  +V    +  A ++FD      
Sbjct: 73  LLRSCKTVALL---QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPK 129

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +  WN++  G+  + F RE + LF  M+   V P+  T   ++ +CA++     G EIH 
Sbjct: 130 VELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHC 189

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            + + GL     +A  L+D+Y     + SA ++F  M+ + +V+ T+MI GY     + +
Sbjct: 190 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL 249

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR++FD  PE+ VV WN ++ GY++    K A  LF  M                     
Sbjct: 250 ARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPY------------------- 290

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
                          ++  + N +L     + YA  G++    Q+F EMPERN  ++  +
Sbjct: 291 ---------------RDTMSWNTML-----NGYANNGDVEACEQLFEEMPERNVFSWNGL 330

Query: 385 IGGLALHGKALDAISYFSEMIGVGL-MPDEITFLGILSACCHGGLVDEGRKYFAQMSSI- 442
           IGG A +G   + +  F  M+  GL +P++ T + +LSAC   G +D G+      ++I 
Sbjct: 331 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIG 390

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F+ S  +   + ++D+  + GL+E A ++  SM +  D++ W ++      HG
Sbjct: 391 FKGSIYVG--NALIDMYSKCGLIENAMEVFESMDL-KDLITWNSMICGLATHG 440


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/593 (34%), Positives = 327/593 (55%), Gaps = 53/593 (8%)

Query: 6   LISHGF------APSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           +I+HGF      AP+ + ++  +   K + +   +  +  +P    WN   RG+      
Sbjct: 48  IITHGFQYNGYVAPNVVTSWVGL---KQMAHARHLFDHFPDPKVELWNAISRGYFHNAFY 104

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           RE V L+ +M ++   RP+ FT+PL+ K CA +G    G EI   V+K G + + +V   
Sbjct: 105 REVVFLFGKM-KSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATT 163

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I V+     +G A  +F     RN+V+W S+I+G++       A RLF D+  ER    
Sbjct: 164 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLF-DLAPER---- 218

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
                                              V L N ++  Y++ G +++A ++FD
Sbjct: 219 ----------------------------------DVVLWNIMVSGYIEIGDMKAARKLFD 244

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           +M  +  +S  TM+ GYA  G ++   ++F+++PE+ V  WN +IGGY       E L  
Sbjct: 245 TMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRC 304

Query: 300 FHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           F  M   G + P+  T V  LSAC++LGALD G W+H +     F  ++ +G AL+DMY+
Sbjct: 305 FKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYS 364

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG I  A++VF  M  ++ +T+ ++I GLA HG   DA++ F +M   G  PD ITF+G
Sbjct: 365 KCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIG 424

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L +C H GLV+EG  YF  M + + ++P+++HY CMVDL GR+GLL+ A + ++ MPM 
Sbjct: 425 VLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPME 484

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
           AD V+W AL  ACR++ N+ + E A  KL+ L+P++   YVLL+N+Y D   W++  +++
Sbjct: 485 ADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLK 544

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC---LVQLTRHF 588
            +M + G +K PGCS IEVN  + EF   D+ H + ++IY     L++L R F
Sbjct: 545 ILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSF 597



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 192/412 (46%), Gaps = 45/412 (10%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L + C ++ L     ++   ++  GF  + YV   V+  +V    +  A ++FD      
Sbjct: 31  LLRSCKTVALL---QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPK 87

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +  WN++  G+  + F RE + LF  M+   V P+  T   ++ +CA++     G EIH 
Sbjct: 88  VELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHC 147

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            + + GL     +A  L+D+Y     + SA ++F  M+ + +V+ T+MI GY     + +
Sbjct: 148 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL 207

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR++FD  PE+ VV WN ++ GY++    K A  LF  M                     
Sbjct: 208 ARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPY------------------- 248

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
                          ++  + N +L     + YA  G++    Q+F EMPERN  ++  +
Sbjct: 249 ---------------RDTMSWNTML-----NGYANNGDVEACEQLFEEMPERNVFSWNGL 288

Query: 385 IGGLALHGKALDAISYFSEMIGVGL-MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           IGG A +G   + +  F  M+  GL +P++ T + +LSAC   G +D G K+    ++  
Sbjct: 289 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG-KWVHVYAATI 347

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
                +   + ++D+  + GL+E A ++  SM +  D++ W ++      HG
Sbjct: 348 GFKGSIYVGNALIDMYSKCGLIENAMEVFESMDL-KDLITWNSMICGLATHG 398


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 303/552 (54%), Gaps = 32/552 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   ++NP+  +W+  I G  + G  +EA +L+  ++R  G RP+ FT   L     ++
Sbjct: 107 KVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELF-HLMRRKGARPNQFTLSSLVSTATNM 165

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  I G + K GF+ D  V N +I +++    +     VF+     +LVSWN+L+
Sbjct: 166 GDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALL 225

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +GF  S       R+F  M LE  +P+  T I ++ +C+ L D   G+++H +I ++   
Sbjct: 226 SGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSD 285

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  AL+DMY K   LE A   FD +VN                      R IF   
Sbjct: 286 DDDFVGTALVDMYAKARCLEDAGVAFDRLVN----------------------RDIF--- 320

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  W  II GY Q  ++++A+  F +MQ  GIKP+  T   CLS CS +  L++G 
Sbjct: 321 ------SWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGR 374

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H    K     ++ +G+ALVD+Y KCG +  A  +F  +  R+ +++  II G + HG
Sbjct: 375 QLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHG 434

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +   A+  F  M+  G+MPDE TF+G+LSAC   GLV+EG+K F  MS I+ ++P ++HY
Sbjct: 435 QGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHY 494

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVD+LGR+G   E +  I  M +    ++W  +  AC+LHGNV  GE+AA KL E++P
Sbjct: 495 ACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEP 554

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
                Y+LL+N++     W++   +R +M  RG++K PGCS +EV+G ++ F+ +D SHP
Sbjct: 555 MMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHP 614

Query: 573 ELEQIYDCLVQL 584
           ++ +IY  L +L
Sbjct: 615 KIREIYAKLDKL 626



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 229/482 (47%), Gaps = 49/482 (10%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           ++   ++ F +   N  SWN  + G+ + G  ++ + L+ +M +   T+   FT   + K
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKM-KECETKFSKFTLSTVLK 59

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA+ G    G  +    L+ G ++D ++  +++ ++  CG +  A  VF +    ++V+
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W+++I G  + G  +EA  LF  M+ +   P++ T+  +VS    + DL  G+ IH  I 
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G      ++N L+ MY+K   +E   ++F++M N  +VS                   
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVS------------------- 220

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA++ G+  ++       +F++M   G KP+  T +  L +CS L  
Sbjct: 221 ------------WNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLD 268

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G  +H  I K + + +  +GTALVDMYAK   +  A   F  +  R+  ++T II G
Sbjct: 269 PEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISG 328

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
            A   +A  A+ YF +M   G+ P+E T    LS C H   ++ GR+  A       ++ 
Sbjct: 329 YAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHA-------VAV 381

Query: 448 KLKHY------SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           K  H+      S +VDL G+ G +E AE + + + ++ D+V W  +      HG    GE
Sbjct: 382 KAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQ---GE 437

Query: 502 RA 503
           +A
Sbjct: 438 KA 439



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 191/397 (48%), Gaps = 38/397 (9%)

Query: 2   TITGLI-SHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETG 57
           +I G I  +GF    L++   I    +S+ ++   K+   + NP+  SWN  + GF ++ 
Sbjct: 173 SIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQ 232

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
                  ++ QML  G  +P+ FT+  + + C+SL     G ++  H++K   D D +V 
Sbjct: 233 TCGRGPRIFYQMLLEG-FKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG 291

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
            A++ ++     L  A   FD    R++ SW  +I+G+ ++    +A++ FR MQ E ++
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+E T+   +S C+ +  L  GR++H    ++G    + + +AL+D+Y KCG +E AE I
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAI 411

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  ++++ +VS  T+I GY++ G                               + ++AL
Sbjct: 412 FKGLISRDIVSWNTIISGYSQHG-------------------------------QGEKAL 440

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDM 356
             F  M + GI PD  T +  LSACS +G +++G      + K    N ++     +VD+
Sbjct: 441 EAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDI 500

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
             + G   +      EM     SL +  ++G   LHG
Sbjct: 501 LGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHG 537


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 344/635 (54%), Gaps = 59/635 (9%)

Query: 1   MTITGLISHGFAPSRLIA----FCAISESKNLDYCTKILFNVQNPNSFS----WNVAIRG 52
           + +TG     F  +R+++    F  +S+++ +       F V     FS    WN  +R 
Sbjct: 57  IIVTGSHRSAFLAARVVSVYAGFGLVSDAQRV-------FEVSPIECFSNLLLWNSILRA 109

Query: 53  FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
            +  G   EA+++Y +M R  G   D FT+PL+ + CA +G R L   + GHV+++GF  
Sbjct: 110 NVAHGYCEEALEIYCRM-RKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +++V N ++ ++   G +  A  VF+   VR+ VSWN++++G+  +     A  +FR M 
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 228

Query: 173 LERVEPDEVTMIGMVSA---CAQ--------------------------------LEDLN 197
              +EP+ VT   ++S+   C Q                                L   +
Sbjct: 229 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFD 288

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G+ IH Y+ + G    + + N+L+ +Y K G + +A  +F  +  K +VS   +I  YA
Sbjct: 289 EGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYA 348

Query: 258 KFGFLDIARKIF------DDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
             G+ D A  IF      D+ P     VV W+A+IGG+    + +EAL LF  MQ   +K
Sbjct: 349 DLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVK 408

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            ++VT    LS C++L AL  G  IH  + +   + N+++G  L++MY K G+  +   V
Sbjct: 409 ANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLV 468

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F ++  ++ +++  ++ G  +HG   +AI  F +MI  G  PD +TF+ +LSAC H GLV
Sbjct: 469 FEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLV 528

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            EGR+ F +M   FR+ P+++HY+CMVDLLGR+GLL+EA ++++SMP+  +  VWGAL  
Sbjct: 529 AEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 588

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           +CR+H N  + E  A ++  L+ + +G Y+LL+N+Y  S  WE++ KVR   + +G++KT
Sbjct: 589 SCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKT 648

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           PG S I+V   +Y F   +  H ELE++Y  L  L
Sbjct: 649 PGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDL 683



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 199/474 (41%), Gaps = 51/474 (10%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           +P+N        +        L  +I   ++  G     ++   V+ V+   G +  A  
Sbjct: 28  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 87

Query: 136 VFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           VF+ S   C  NL+ WNS++   V  G+  EA+ ++  M+   V  D  T   ++ ACA 
Sbjct: 88  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACAL 147

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           +    L R +H ++ E G    + + N LM MY K G+++ A ++F+ M  ++ VS  TM
Sbjct: 148 MGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTM 207

Query: 253 IVGYAK----FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
           + GYA      G  ++ R +     E  +V W +++  + +  +  E + LF  M+  GI
Sbjct: 208 VSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGI 267

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
              A      LS    L A D+G  IH ++ K  F   + +  +L+ +Y K GN+  A  
Sbjct: 268 GATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARI 327

Query: 369 VFHEMPER---------------------------------------NSLTYTAIIGGLA 389
           +F E+  +                                       N ++++A+IGG A
Sbjct: 328 LFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFA 387

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             G+  +A+  F  M    +  + +T   +LS C     +  GR+    +     +   +
Sbjct: 388 SKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNI 446

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
              + ++++  +SG  +E   +   +    D++ W  +     +HG   +GE A
Sbjct: 447 LVGNGLINMYTKSGSFKEGNLVFEKIE-NKDLISWNTMVAGYGIHG---LGENA 496


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/456 (41%), Positives = 275/456 (60%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FDE    +++S+ SL++  ++     +AI +F         PD    +G +SA   
Sbjct: 72  AGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGG 131

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L D  +G  +H  I   GL   + + NAL+DMY +CGK E A  +FD M+ K  V+  +M
Sbjct: 132 LGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSM 191

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           + GY K   +D A   F  +P K  V W A+I G+VQ K+  +AL LF +M   G +P+ 
Sbjct: 192 LYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNH 251

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           +T V  LSAC+ +GALD G  IH +  K N   N+++  AL+DMYAK G+IA A  VF E
Sbjct: 252 ITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEE 311

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           +  +++ T+T +I    + G    A+  F +M+  G++P+ +TF+ +LSAC H GL+ EG
Sbjct: 312 VQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEG 371

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           R+ F +M  ++ + P+L+HY CMVDLLGR GLLEEAE LI  M +  D+V+W +L  AC 
Sbjct: 372 RELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACL 431

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
            HGN  + E A  ++++ +P D G+YVLL NMY  SN W+EA  +RK M  R + K PGC
Sbjct: 432 AHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGC 491

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           S IEV+G+++EF+V DKSH    +IY  L  + RH 
Sbjct: 492 SWIEVDGVVHEFLVEDKSHDARREIYVTLEIMARHL 527



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 160/360 (44%), Gaps = 67/360 (18%)

Query: 7   ISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ++HG  P++    C I    +E        ++   + +P+  S+   +   L+     +A
Sbjct: 44  LTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKA 103

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++   + +G  RPD F           LG + +G  + G + + G D ++ V NA++ 
Sbjct: 104 ISVFSHAIASG-HRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVD 162

Query: 123 VFVSCGDLGLACNVFDE-----------------SCV--------------RNLVSWNSL 151
           ++  CG    A  VFD                   CV              ++ VSW +L
Sbjct: 163 MYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTAL 222

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I G V+   P +A+ LF  M LE   P+ +T++G++SACA +  L+LGR IH Y S+S  
Sbjct: 223 ITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNA 282

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           T  + + NALMDMY K G + SA  +F+ +  K   + TTMI  +   G           
Sbjct: 283 TTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQG----------- 331

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                                 ++A+ LF +M  +GI P++VT V  LSACS  G + +G
Sbjct: 332 --------------------NGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEG 371



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 131/285 (45%), Gaps = 34/285 (11%)

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           N+  +SC  +   YA+FG    A ++FD++P   ++ + +++  +++     +A+++F  
Sbjct: 51  NQQSISCK-IFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH 109

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
             A+G +PD    V  LSA   LG    G  +H  I +   +  +V+  ALVDMY +CG 
Sbjct: 110 AIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGK 169

Query: 363 -------------------------------IAKALQVFHEMPERNSLTYTAIIGGLALH 391
                                          +  AL  F++MP ++++++TA+I G    
Sbjct: 170 FEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQD 229

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
            + + A+  F +M+  G  P+ IT +G+LSAC   G +D GR       S    +  +  
Sbjct: 230 KQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHG-YGSKSNATTNIIV 288

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            + ++D+  +SG +  A  +   + M  D   W  +  +  + GN
Sbjct: 289 TNALMDMYAKSGSIASAFSVFEEVQM-KDAFTWTTMISSFTVQGN 332


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/584 (35%), Positives = 318/584 (54%), Gaps = 36/584 (6%)

Query: 3   ITGLISHGFAPSRLIA-FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           + G  S+ F  S L+  +C  S    + Y  K+   + + ++  WN  I G +      +
Sbjct: 131 VDGFDSNLFVASALVDLYCKFSR---VAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDD 187

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           +V ++K M+  G  R D+ T   +    A +    +G  I    LKLGF  D YV   +I
Sbjct: 188 SVQVFKDMVAQG-VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLI 246

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            VF  C D+  A  +F      +LVS+N+LI+GF  +G    A++ FR++ +        
Sbjct: 247 SVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSS 306

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           TM+G++   +    L+L   I  +  +SG  L   ++ AL  +Y                
Sbjct: 307 TMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIY---------------- 350

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                          ++   +D+AR++FD+  EK V  WNA+I GY Q+  ++ A++LF 
Sbjct: 351 ---------------SRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQ 395

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM  T   P+ VT    LSAC+QLGAL  G  +H+ I+ +N   N+ + TAL+DMYAKCG
Sbjct: 396 EMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCG 455

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           NI++A Q+F    E+N++T+  +I G  LHG   +A+  F+EM+ +G  P  +TFL +L 
Sbjct: 456 NISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLY 515

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLV EG + F  M + +R+ P  +HY+CMVD+LGR+G LE+A + IR MP+    
Sbjct: 516 ACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGP 575

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            VWG L  AC +H + ++   A+ +L ELDP + G YVLL+N+Y     + +A  VR+ +
Sbjct: 576 AVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAV 635

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           ++R + KTPGC+ IEVNG  + F+  D+SH +   IY  L +LT
Sbjct: 636 KKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELT 679



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 227/506 (44%), Gaps = 42/506 (8%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           + F+V  P+ F +NV I+GF        ++  Y  +L+N    PDNFTY   F + AS  
Sbjct: 62  LFFSVPKPDIFLFNVLIKGF-SFSPDASSISFYTHLLKNTTLSPDNFTYA--FAISASPD 118

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              LG  +  H +  GFD +++V +A++ ++     +  A  VFD+   R+ V WN++I 
Sbjct: 119 DN-LGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMIT 177

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G VR+    +++++F+DM  + V  D  T+  ++ A A+++++ +G  I     + G   
Sbjct: 178 GLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHF 237

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              +   L+ ++ KC  +++A  +F  +    +VS                         
Sbjct: 238 DDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVS------------------------- 272

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                 +NA+I G+     ++ A+  F E+  +G +  + T V  +   S  G L     
Sbjct: 273 ------YNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACC 326

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           I  F  K    L   + TAL  +Y++   I  A Q+F E  E+    + A+I G A  G 
Sbjct: 327 IQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGL 386

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
              AIS F EM+     P+ +T   ILSAC   G +  G K   Q+     L   +   +
Sbjct: 387 TEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFG-KSVHQLIKSKNLEQNIYVST 445

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
            ++D+  + G + EA QL   +    + V W  + F   LHG      +   ++L L  Q
Sbjct: 446 ALIDMYAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQ 504

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRK 539
            S +   L+ +Y  S+    AG VR+
Sbjct: 505 PSSV-TFLSVLYACSH----AGLVRE 525


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 208/633 (32%), Positives = 343/633 (54%), Gaps = 59/633 (9%)

Query: 3    ITGLISHGFAPSRLIA----FCAISESKNLDYCTKILFNVQNPNSFS----WNVAIRGFL 54
            +TG     F  +R+++    F  +S+++ +       F V     FS    WN  +R  +
Sbjct: 897  VTGSHRSAFLAARVVSVYAGFGLVSDAQRV-------FEVSPIECFSNLLLWNSILRANV 949

Query: 55   ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
              G   EA+++Y +M R  G   D FT+PL+ + CA +G R L   + GHV+++GF  ++
Sbjct: 950  AHGYCEEALEIYCRM-RKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 1008

Query: 115  YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
            +V N ++ ++   G +  A  VF+   VR+ VSWN++++G+  +     A  +FR M   
Sbjct: 1009 HVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSA 1068

Query: 175  RVEPDEVTMIGMVSA---CAQ--------------------------------LEDLNLG 199
             +EP+ VT   ++S+   C Q                                L   + G
Sbjct: 1069 GLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEG 1128

Query: 200  REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            + IH Y+ + G    + + N+L+ +Y K G + +A  +F  +  K +VS   +I  YA  
Sbjct: 1129 KVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADL 1188

Query: 260  GFLDIARKIF------DDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
            G+ D A  IF      D+ P     VV W+A+IGG+    + +EAL LF  MQ   +K +
Sbjct: 1189 GWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKAN 1248

Query: 312  AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            +VT    LS C++L AL  G  IH  + +   + N+++G  L++MY K G+  +   VF 
Sbjct: 1249 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 1308

Query: 372  EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            ++  ++ +++  ++ G  +HG   +AI  F +MI  G  PD +TF+ +LSAC H GLV E
Sbjct: 1309 KIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAE 1368

Query: 432  GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
            GR+ F +M   FR+ P+++HY+CMVDLLGR+GLL+EA ++++SMP+  +  VWGAL  +C
Sbjct: 1369 GRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSC 1428

Query: 492  RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
            R+H N  + E  A ++  L+ + +G Y+LL+N+Y  S  WE++ KVR   + +G++KTPG
Sbjct: 1429 RMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPG 1488

Query: 552  CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             S I+V   +Y F   +  H ELE++Y  L  L
Sbjct: 1489 QSWIQVKKKVYMFSAGNTQHAELEEVYRILKDL 1521



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 199/474 (41%), Gaps = 51/474 (10%)

Query: 76   RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
            +P+N        +        L  +I   ++  G     ++   V+ V+   G +  A  
Sbjct: 866  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 925

Query: 136  VFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
            VF+ S   C  NL+ WNS++   V  G+  EA+ ++  M+   V  D  T   ++ ACA 
Sbjct: 926  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACAL 985

Query: 193  LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
            +    L R +H ++ E G    + + N LM MY K G+++ A ++F+ M  ++ VS  TM
Sbjct: 986  MGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTM 1045

Query: 253  IVGYAK----FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            + GYA      G  ++ R +     E  +V W +++  + +  +  E + LF  M+  GI
Sbjct: 1046 VSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGI 1105

Query: 309  KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
               A      LS    L A D+G  IH ++ K  F   + +  +L+ +Y K GN+  A  
Sbjct: 1106 GATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARI 1165

Query: 369  VFHEMPER---------------------------------------NSLTYTAIIGGLA 389
            +F E+  +                                       N ++++A+IGG A
Sbjct: 1166 LFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFA 1225

Query: 390  LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
              G+  +A+  F  M    +  + +T   +LS C     +  GR+    +     +   +
Sbjct: 1226 SKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNI 1284

Query: 450  KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
               + ++++  +SG  +E   +   +    D++ W  +     +HG   +GE A
Sbjct: 1285 LVGNGLINMYTKSGSFKEGNLVFEKIE-NKDLISWNTMVAGYGIHG---LGENA 1334


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/444 (41%), Positives = 278/444 (62%), Gaps = 7/444 (1%)

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
           N FDE    N+ S++++I+  V+S     A   +  M    VEP+  T   ++ +C+   
Sbjct: 103 NTFDEP---NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS--- 156

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L  G+ +H    + GL   + +   L+D+Y + G +  A ++FD M  +++VS TTM+ 
Sbjct: 157 -LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLT 215

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            Y+K G LD AR +F+ + E+ VV WN +IGGY Q+    E+L LF  M      P+ VT
Sbjct: 216 CYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVT 275

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +  LSAC QLGAL+ G WIH +IE +   +NV +GTAL+DMY+KCG++  A  VF  + 
Sbjct: 276 VLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIR 335

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ + + ++I G A+HG +  A+  F EM   G  P +ITF+GILSAC HGGLV+EGR 
Sbjct: 336 DKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRS 395

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F  M   + + PK++HY CMV+LLGR+G LEEA  L+++M +AAD V+WG L   CRLH
Sbjct: 396 FFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            N+ +GE  A  L++    +SG YVLL+NMY  +  WE   K+R +M+E G+EK  GCSS
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515

Query: 555 IEVNGLLYEFIVRDKSHPELEQIY 578
           IEV+  ++EF+  ++ HP+ ++IY
Sbjct: 516 IEVDNKVHEFVAGERKHPKSKEIY 539



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 183/395 (46%), Gaps = 70/395 (17%)

Query: 31  CTKILFNV-QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C+  +FN    PN FS++  I   +++     A   Y QML + G  P+ FT+  + K C
Sbjct: 97  CSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQML-SCGVEPNAFTFSSVLKSC 155

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS-- 147
           +       G  +    +KLG   D+YV   ++ V+   GD+  A  +FD+   R+LVS  
Sbjct: 156 SLES----GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLT 211

Query: 148 -----------------------------WNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
                                        WN +I G+ +SG P E+++LFR M + +  P
Sbjct: 212 TMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIP 271

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +EVT++ ++SAC QL  L  GR IH YI   G+ + V +  AL+DMY KCG LE A  +F
Sbjct: 272 NEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVF 331

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D + +K VV+  +MIVGYA  GF                               S+ AL 
Sbjct: 332 DRIRDKDVVAWNSMIVGYAMHGF-------------------------------SQHALQ 360

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMY 357
           LF EM  TG KP  +T +  LSAC   G +++G    R + +K      +     +V++ 
Sbjct: 361 LFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLL 420

Query: 358 AKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            + G++ +A  +   M    + + +  ++G   LH
Sbjct: 421 GRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+   LD    +   ++  +   WNV I G+ ++G   E++ L+++ML      P+  T 
Sbjct: 218 SKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI-PNEVTV 276

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C  LG    G  I  ++   G  ++++V  A+I ++  CG L  A  VFD    
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++V+WNS+I G+   GF + A++LF +M     +P ++T IG++SAC     +  GR  
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 203 HWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
              + +  G+   +     ++++  + G LE A  +  +M 
Sbjct: 397 FRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMT 437



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 68/326 (20%)

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           +IH  +   GL     L   L   Y   G+L+ +  +F                      
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCS--VF---------------------- 100

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                  +F+   E  V  ++AII  +VQ++    A   + +M + G++P+A T    L 
Sbjct: 101 -------VFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLK 153

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN--S 378
           +CS    L+ G  +H    K     ++ + T LVD+YA+ G++  A Q+F +MPER+  S
Sbjct: 154 SCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVS 209

Query: 379 LT-----------------------------YTAIIGGLALHGKALDAISYFSEMIGVGL 409
           LT                             +  +IGG A  G   +++  F  M+    
Sbjct: 210 LTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKA 269

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
           +P+E+T L +LSAC   G ++ GR   + + +   +   +   + ++D+  + G LE+A 
Sbjct: 270 IPNEVTVLAVLSACGQLGALESGRWIHSYIENK-GIQINVHVGTALIDMYSKCGSLEDA- 327

Query: 470 QLIRSMPMAADVVVWGALFFACRLHG 495
           +L+       DVV W ++     +HG
Sbjct: 328 RLVFDRIRDKDVVAWNSMIVGYAMHG 353


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/509 (37%), Positives = 309/509 (60%), Gaps = 7/509 (1%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFD--VDMYVHNAVIHVFVSCGDLGLACNVFDE 139
           Y  L + CA      +G  +   ++  G     + ++HNA++  + SCG    A  VFDE
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 140 --SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
                ++ V W +L+  FVR     EA+ +F +M+   V+PDEVT++ +   CA+L D+ 
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
           +G + H  + + GL       NA+MDMY K G +  A  +F  M  ++VVS T ++ G  
Sbjct: 136 VGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVI 195

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTV 316
           +   +   R +FD++PE+  V W  +I GY+ +  ++E+ AL  EM     ++ + VT  
Sbjct: 196 RSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLC 255

Query: 317 HCLSACSQLGALDDGIWIHRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
             L+ACSQ G L  G W+H + ++ +   LN+++GTA+VDMYAKCG I  A + F +MP+
Sbjct: 256 SILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQ 315

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           RN +++ A++ GLA+HG    A+  F +M      PD++TF  +LSAC H GLVD+G  Y
Sbjct: 316 RNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFY 374

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  + S++ ++PK++HY+CMVDLLGR+G LEEAE L+R MP+  + VV G+L  +C +HG
Sbjct: 375 FGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHG 434

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
            + +GE    +L++LDPQ++  ++LL+NMY  +     A  +R+++++RG++K PG SSI
Sbjct: 435 KLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            V G +++F   DKSHP   ++Y+ L ++
Sbjct: 495 HVGGQVHQFSAGDKSHPRTREVYNMLDEM 523



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 171/389 (43%), Gaps = 68/389 (17%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           + ++  W   +  F+      EA+ ++ +M R  G +PD  T   LF  CA LG   +G 
Sbjct: 80  HKDTVDWTTLMGCFVRHNVSDEALLIFVEM-RRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR-- 157
           +  G ++K+G        NAV+ ++   G +G A  VF E   +++VSW  +++G +R  
Sbjct: 139 QGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSE 198

Query: 158 -----------------------------SGFPREAIRLFRDMQLE-RVEPDEVTMIGMV 187
                                        SG  +E+  L R+M  +  +E + VT+  ++
Sbjct: 199 GVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSIL 258

Query: 188 SACAQLEDLNLGREIHWY-ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           +AC+Q  DL +GR +H Y +      L + +  A++DMY KCG++  A + F  M  + V
Sbjct: 259 TACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNV 318

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           VS   M+ G A  G   + R   D  P+ +                 KEA          
Sbjct: 319 VSWNAMLSGLAMHG---LGRAALDIFPQMF-----------------KEA---------- 348

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAK 365
             KPD VT    LSACS  G +D G +    +E        V     +VD+  + G + +
Sbjct: 349 --KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEE 406

Query: 366 ALQVFHEMPER-NSLTYTAIIGGLALHGK 393
           A  +  EMP R N +   +++G  ++HGK
Sbjct: 407 AEILVREMPIRPNEVVLGSLLGSCSIHGK 435


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 275/446 (61%), Gaps = 4/446 (0%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +F +    N  +W +LI  +   G   +A+  +  M+  RV P   T   + SACA +  
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 196 LNLGREIH-WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
             LG ++H   +   G +  + + NA++DMYVKCG L  A  +FD M  + V+S T +IV
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIV 184

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
            Y + G +  AR +FD LP K +V W A++ GY Q     +AL +F  ++  G++ D VT
Sbjct: 185 AYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVT 244

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHE 372
            V  +SAC+QLGA     WI    E   F +  NV++G+AL+DMY+KCGN+ +A  VF  
Sbjct: 245 LVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKG 304

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M ERN  +Y+++I G A+HG+A  AI  F +M+  G+ P+ +TF+G+L+AC H GLVD+G
Sbjct: 305 MRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQG 364

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           ++ FA M   + ++P  + Y+CM DLL R+G LE+A QL+ +MPM +D  VWGAL  A  
Sbjct: 365 QQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASH 424

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           +HGN  + E A+ +L EL+P + G Y+LL+N Y  +  W++  KVRK++ E+ ++K PG 
Sbjct: 425 VHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGW 484

Query: 553 SSIEV-NGLLYEFIVRDKSHPELEQI 577
           S +E  NG++++F+  D SHP++ +I
Sbjct: 485 SWVEAKNGMIHKFVAGDVSHPKINEI 510



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 194/397 (48%), Gaps = 69/397 (17%)

Query: 33  KILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           ++LF+ +  PN F+W   IR +   G + +A+  Y  M R     P +FT+  LF  CA+
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSM-RKRRVSPISFTFSALFSACAA 121

Query: 92  LGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---------- 140
           +    LG ++    L L GF  D+YV+NAVI ++V CG L  A  VFDE           
Sbjct: 122 VRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTG 181

Query: 141 ---------------------CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
                                 V+++V+W +++ G+ ++  P +A+ +FR ++ E VE D
Sbjct: 182 LIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEID 241

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTL--TVPLANALMDMYVKCGKLESAEEI 237
           EVT++G++SACAQL        I      SG  +   V + +AL+DMY KCG +E A ++
Sbjct: 242 EVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDV 301

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  M  + V S ++MIVG+A  G                               R++ A+
Sbjct: 302 FKGMRERNVFSYSSMIVGFAIHG-------------------------------RARAAI 330

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDM 356
            LF++M  TG+KP+ VT V  L+ACS  G +D G  +   +EK         L   + D+
Sbjct: 331 KLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDL 390

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            ++ G + KALQ+   MP E +   + A++G   +HG
Sbjct: 391 LSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHG 427



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  N++    +   ++  N FS++  I GF   G+ R A+ L+  ML   G +P++ T+
Sbjct: 290 SKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLET-GVKPNHVTF 348

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLK 107
             +   C+  GL   G ++F  + K
Sbjct: 349 VGVLTACSHAGLVDQGQQLFASMEK 373


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 205/618 (33%), Positives = 328/618 (53%), Gaps = 48/618 (7%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           +R     A S + +L    KI  +      +S  +N  I  +        A++L+  M R
Sbjct: 81  ARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQR 140

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLG-YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD- 129
           +   RPDN+T+  +    A +  +     ++   V+K G      V NA+I  +V C   
Sbjct: 141 DN-FRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAAS 199

Query: 130 --------LGLACNVFDESCVRNLVSWNSLINGFVRS----------------------- 158
                   +  A  +FDE   R+ +SW ++I G+V++                       
Sbjct: 200 PSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNA 259

Query: 159 --------GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY----I 206
                   G   EA  +FR M + +++ DE T   ++S CA      LG+E+H Y    +
Sbjct: 260 MISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTV 319

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +     + +P+ NAL+  Y KCGK++ A+EIF+ M  + +VS   ++ GY     +D A+
Sbjct: 320 ANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAK 379

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
             F+++PEK ++ W  +I G  Q   ++EAL  F+ M+  G +P        + +CS LG
Sbjct: 380 SFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLG 439

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           +L  G  +H  + +  +  ++  G AL+ MYA+CG +  A  +F  MP  +++++ A+I 
Sbjct: 440 SLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIA 499

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
            L  HG+   AI  F EM+  G++PD I+FL ++SAC H GLV EGRKYF  M +++ ++
Sbjct: 500 ALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVN 559

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P  +HY+ ++DLL R+G   EA++++ SMP      +W AL   CR+HGN+ +G  AA +
Sbjct: 560 PDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAER 619

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L EL PQ  G YVLL+NMY  +  W +  KVRK+M +RGV+K PGCS IEV   ++ F+V
Sbjct: 620 LFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLV 679

Query: 567 RDKSHPELEQIYDCLVQL 584
            D +HPE+ QIY+ L QL
Sbjct: 680 GDANHPEVRQIYNYLEQL 697



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 195/431 (45%), Gaps = 49/431 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D+     +I  + + GDL L+  +F ++ +  R+ V +N++I  +  +     AI LF D
Sbjct: 78  DIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCD 137

Query: 171 MQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           MQ +   PD  T   ++ A A + E     +++H  + +SG      + NAL+  YVKC 
Sbjct: 138 MQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCA 197

Query: 230 K---------LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
                     +  A ++FD M N+  +S TT+I GY K   LD A++  +   +K  V W
Sbjct: 198 ASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAW 257

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA+I GY       EA  +F +M  + I+ D  T    +S C+  G    G  +H +  K
Sbjct: 258 NAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK 317

Query: 341 ENFN----LNVVLGTALVDMYAKCGNIAKALQV--------------------------- 369
              N    + + +  AL+  Y KCG +  A ++                           
Sbjct: 318 TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDE 377

Query: 370 ----FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
               F+EMPE+N L++  +I GLA  G A +A+ +F+ M   G  P +  F G + +C  
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSV 437

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            G +  GR+  AQ+   +     L   + ++ +  R G+++ A  L  +MP   D + W 
Sbjct: 438 LGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMP-CVDAISWN 495

Query: 486 ALFFACRLHGN 496
           A+  A   HG 
Sbjct: 496 AMIAALGQHGQ 506



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 169/397 (42%), Gaps = 50/397 (12%)

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           +L R +H ++  SG      + N L+D+Y K  KL  A  +FD +    +V+ TT+I  Y
Sbjct: 30  SLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY 89

Query: 257 AKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           +  G L ++RKIF D P   +  V +NA+I  Y        A+ LF +MQ    +PD  T
Sbjct: 90  SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYT 149

Query: 315 TVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGN---------IA 364
               L A + +   +     +H  + K        +  AL+  Y KC           +A
Sbjct: 150 FTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMA 209

Query: 365 KALQVFHEMPERNSLTYT-------------------------------AIIGGLALHGK 393
           +A ++F EMP R+ L++T                               A+I G A  G 
Sbjct: 210 EARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKH- 451
            L+A   F +MI   +  DE TF  ++S C + G    G++  A  + ++   +P +   
Sbjct: 270 YLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMP 329

Query: 452 -YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
             + ++    + G ++ A+++   MP   D+V W  +      + NV   + A     E+
Sbjct: 330 VNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILSG---YVNVRCMDEAKSFFNEM 385

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ++   ++++ +        EEA K    M+ +G E
Sbjct: 386 PEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFE 422


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 308/561 (54%), Gaps = 6/561 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S S +L     +   +  P+  +W + I    + G+  EA+  Y          PD    
Sbjct: 22  SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLL 81

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             + K CASL        +    ++ GF  D+ + NA+I ++  C     A  VF+    
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF 141

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+++SW S+ + +V  G  REA+  FR M L    P+ VT+  ++ AC  L+DL  GRE+
Sbjct: 142 RDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREV 201

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY-----A 257
           H ++  +G+   V +++AL++MY  C  +  A+ +FDSM  +  VS   +I  Y      
Sbjct: 202 HGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKEC 261

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
           + G     R + + +   Y   WNA+IGG +Q  R+++AL +   MQ +G KP+ +T   
Sbjct: 262 EKGLSVFGRMMSEGVGLNYA-SWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITS 320

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L AC+ L +L  G  IH +I +  F  ++   TALV MYAKCG++  + +VF  M +R+
Sbjct: 321 VLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRD 380

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           ++++  +I   ++HG   +A+  F EM+  G+ P+ +TF G+LS C H  LVDEG   F 
Sbjct: 381 TVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFD 440

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            MS    + P   H+SCMVD+L R+G LEEA + I+ MP+      WGAL   CR++ NV
Sbjct: 441 SMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNV 500

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
            +G  AA +L E++  + G YVLL+N+   + +W EA + RK+M +RGV K PGCS I+V
Sbjct: 501 ELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQV 560

Query: 558 NGLLYEFIVRDKSHPELEQIY 578
              ++ F+V DKS+ + ++IY
Sbjct: 561 RNRVHTFVVGDKSNDQSDEIY 581



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 190/435 (43%), Gaps = 78/435 (17%)

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPD 179
           I V+ + GDL  A ++FD+    +L +W  LI+   + G   EAI+ + D + +  VEPD
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           ++ ++ +  ACA L D+   + +H      G    V L NAL+DMY KC   E A  +F+
Sbjct: 78  KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M  + V+S T+M   Y   G L                               +EAL  
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLL-------------------------------REALGA 166

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M   G +P++VT    L AC+ L  L  G  +H F+ +     NV + +ALV+MYA 
Sbjct: 167 FRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYAS 226

Query: 360 CGNIAKALQVFHEMPERNSL-----------------------------------TYTAI 384
           C +I +A  VF  M  R+++                                   ++ A+
Sbjct: 227 CLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAV 286

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           IGG   +G+   A+   S M   G  P++IT   +L AC +   +  G++       IFR
Sbjct: 287 IGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGY---IFR 343

Query: 445 --LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
                 L   + +V +  + G LE + ++  SM    D V W  +  A  +HGN   GE 
Sbjct: 344 HWFFQDLTTTTALVFMYAKCGDLELSRRVF-SMMTKRDTVSWNTMIIATSMHGN---GEE 399

Query: 503 AAMKLLELDPQDSGI 517
           A +   E+   DSG+
Sbjct: 400 ALLLFREM--VDSGV 412



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           L    + +Y+  G++ +A  +F ++P+ +  T+T +I  L  HG++L+AI Y+++     
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 409 LM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLE 466
            + PD++  L +  AC    L D          +I F     +   + ++D+ G+    E
Sbjct: 73  CVEPDKLLLLSVAKAC--ASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSE 130

Query: 467 EAEQLIRSMPMAADVVVWGAL 487
            A  +   MP   DV+ W ++
Sbjct: 131 GARLVFEGMPF-RDVISWTSM 150


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 200/575 (34%), Positives = 318/575 (55%), Gaps = 6/575 (1%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  S+LI F   S+S +  +  K+     + N+F+WN  + G+      R A++L+    
Sbjct: 70  FLASKLILF--YSKSNHAHFARKVFDTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFT 127

Query: 71  --RNGGTRPDNFTYPLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
                   PDNFT   + K  AS      L  E+   +L+ G   D++V NA+I  +  C
Sbjct: 128 FSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRRGLYSDIFVLNALITCYCRC 187

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGM 186
            ++ LA +VFD    R++V+WN++I G+ +     E  RL+ +M  +  V P+ VT + +
Sbjct: 188 DEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSV 247

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           + AC Q  DL  G E+H ++ ESG+ + V L+NA++ MY KCG+L+ A E+F+ M  K  
Sbjct: 248 MQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDE 307

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           V+   +I GY  +G +D A  +F  +    +  WNA+I G VQ K+ +    L  +MQ +
Sbjct: 308 VTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGS 367

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G+ P+AVT    L + S    L  G  +H +  +  +  NV + T+++D Y K G I  A
Sbjct: 368 GLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGA 427

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
             VF     R+ + +T+II   A HG A  A+  +++M+  G+ PD +T   +L+AC H 
Sbjct: 428 RWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTACAHS 487

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLVDE    F  M S + + P ++HY+CMV +L R+G L EA Q I  MP+     VWG 
Sbjct: 488 GLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEPSAKVWGP 547

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L     + G+V IG+ A   L E++P+++G Y+++AN+Y  +  WE+AG+VR+ M+  G+
Sbjct: 548 LLHGASVFGDVEIGKFACDHLFEIEPENTGNYIIMANLYAHAGKWEQAGEVRERMKVIGL 607

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +K  G S IE +G L  FI +D S+   ++IY  L
Sbjct: 608 QKIRGSSWIETSGGLLSFIAKDVSNGRSDEIYALL 642



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 202/475 (42%), Gaps = 73/475 (15%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D   Y    + C+   L   G ++   ++ L    D ++ + +I  +        A  VF
Sbjct: 33  DFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVF 92

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE---RVEPDEVTMIGMVSACA-QL 193
           D +  RN  +WN+++ G+  +   R A+ LF            PD  T+  ++ A A   
Sbjct: 93  DTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSF 152

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
               L +E+H  I   GL   + + NAL+  Y +C ++  A  +FD M  + +V+   MI
Sbjct: 153 CSPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMI 212

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY++       R+++D+    Y+                         +  + + P+ V
Sbjct: 213 GGYSQ-------RRLYDECKRLYL-----------------------EMLNVSAVAPNVV 242

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T V  + AC Q   L  G+ +HRF+++    ++V L  A+V MYAKCG +  A ++F  M
Sbjct: 243 TAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGM 302

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYF-------------------------------S 402
            E++ +TY AII G   +G   DA+  F                                
Sbjct: 303 REKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVR 362

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC-MVDLLGR 461
           +M G GL P+ +T   IL +  +   +  G++      +I R   +  + S  ++D  G+
Sbjct: 363 QMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGY--AIRRGYEQNVYVSTSIIDAYGK 420

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN--VSIGERAAM--KLLELDP 512
            G +  A + +  +  +  +++W ++  A   HG+  +++G  A M  K +  DP
Sbjct: 421 LGCICGA-RWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDP 474


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 320/585 (54%), Gaps = 6/585 (1%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFL--ETGK 58
           + ++ L    F  S+LI F   S+S +L    K+   + + N FSWN  + G+       
Sbjct: 60  IVLSSLTPDNFLASKLITF--YSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHV 117

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLRFLGYEIFGHVLKLGFDVDMYVH 117
               +        +   +PDNFT   + K  + L     L  E+   VL+ GFD D++V 
Sbjct: 118 HTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVV 177

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERV 176
           NA+I  +  C + G+A  +FD    R++VSWNS+I G+ + GF  +   L+R M     +
Sbjct: 178 NALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGL 237

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P+ VT++ ++ ACAQ  DL  G ++H +I E  + + V   N+L+ +Y KCG L+ A E
Sbjct: 238 RPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARE 297

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F+ M NK  V+  +++ GY   GF+D A  +F ++    +  WNA+I G VQ   ++  
Sbjct: 298 LFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGI 357

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L L  EMQ  G +P+AVT    L   S    L  G  IH +  +  +  N+ + T+++D 
Sbjct: 358 LELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDA 417

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           YAK G +  A  VF +  +R+ + +TAII   + HG A  A+  F +M+  G  PD +TF
Sbjct: 418 YAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTF 477

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             +L+AC H G+V+E  K F +M   +   P ++HY+CMV +L R+G+L EA + I  MP
Sbjct: 478 TAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMP 537

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  +  VWGAL     + G+V +G+     L  ++P+++G YV++AN+Y  +  WEEA  
Sbjct: 538 IEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAEN 597

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +R+ M++ G++K PG S IE +G L  FI RD S    E+IY  L
Sbjct: 598 IREKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSEEIYGML 642



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 173/382 (45%), Gaps = 36/382 (9%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L + C+   L     ++   ++      D ++ + +I  +     L  A  VFD+   +N
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99

Query: 145 LVSWNSLINGFVRSGF---PREAIRLFRDMQLERVEPDEVTMIGMVSACAQL-EDLNLGR 200
           + SWN+++ G+            +          ++PD  T+  ++ A + L  D  L +
Sbjct: 100 IFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAK 159

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E+  ++   G    + + NAL+  Y +C +   A  +FD M ++ +VS  +MI GY++ G
Sbjct: 160 EVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGG 219

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
           F +  ++++  +                              + +TG++P+ VT V  L 
Sbjct: 220 FYEDCKELYRKM------------------------------LDSTGLRPNGVTVVSVLQ 249

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+Q   L  G+ +H+FI +    ++V    +L+ +YAKCG++  A ++F+EM  ++ +T
Sbjct: 250 ACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVT 309

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD--EGRKYFAQ 438
           Y +I+ G   HG    A+  F EM    L        G++   C+ G+++  +  + F  
Sbjct: 310 YGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGF 369

Query: 439 MSSIFRLSPKLKHYSCMVDLLG 460
             +   LS  L  +SC  +L G
Sbjct: 370 RPNAVTLSSILPTFSCFSNLKG 391



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 132/316 (41%), Gaps = 36/316 (11%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C+    L   +++H  I  S LT    LA+ L+  Y K   L  A ++FD +++K 
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           + S   M++GY                         +I   +V       +L       +
Sbjct: 100 IFSWNAMLIGY-------------------------SIHNMHVHTLNLLSSLLP---SYS 131

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIW---IHRFIEKENFNLNVVLGTALVDMYAKCGN 362
             +KPD  T    L A S L    D I    +  F+ +  F+ ++ +  AL+  Y++C  
Sbjct: 132 LTLKPDNFTITCVLKALSVL--FPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDE 189

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGILS 421
              A  +F  M +R+ +++ ++I G +  G   D    + +M+   GL P+ +T + +L 
Sbjct: 190 YGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQ 249

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC     +  G K   Q     ++   +  ++ ++ L  + G L+ A +L   M    D 
Sbjct: 250 ACAQTNDLVFGMK-VHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMS-NKDE 307

Query: 482 VVWGALFFACRLHGNV 497
           V +G++      HG V
Sbjct: 308 VTYGSIVSGYMTHGFV 323


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 305/573 (53%), Gaps = 68/573 (11%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           PN  SW   I G  + G   EA+ ++++M+  G  +P++ T       C +L L   G E
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-VKPNSITIASAVSACTNLSLLRHGRE 383

Query: 101 IFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           I G+ +K+   D D+ V N+++  +  C  + +A   F      +LVSWN+++ G+   G
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVS------------------------------- 188
              EAI L  +M+ + +EPD +T  G+V+                               
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 189 ----ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
               AC Q+ +L LG+EIH Y+  + + L+  + +AL+ MY  C  LE            
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLE------------ 551

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             V+C+                 +F +L  + VV WN+II    Q+ RS  AL L  EM 
Sbjct: 552 --VACS-----------------VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMN 592

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
            + ++ + VT V  L ACS+L AL  G  IH+FI +   +    +  +L+DMY +CG+I 
Sbjct: 593 LSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 652

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           K+ ++F  MP+R+ +++  +I    +HG  +DA++ F     +GL P+ ITF  +LSAC 
Sbjct: 653 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACS 712

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GL++EG KYF  M + + + P ++ Y+CMVDLL R+G   E  + I  MP   +  VW
Sbjct: 713 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 772

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           G+L  ACR+H N  + E AA  L EL+PQ SG YVL+AN+Y  +  WE+A K+R +M+ER
Sbjct: 773 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 832

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           GV K PGCS IEV   L+ F+V D SHP +EQI
Sbjct: 833 GVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 865



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 135/576 (23%), Positives = 260/576 (45%), Gaps = 91/576 (15%)

Query: 1   MTITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           + + G+    F  SRL+  +C   ++  ++   ++   +   N FSW   +  +   G  
Sbjct: 115 LVVNGVDVCEFLGSRLLEVYC---QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDY 171

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            E + L+  M+ N G RPD+F +P +FK C+ L    +G +++ ++L +GF+ +  V  +
Sbjct: 172 EETIKLFYLMV-NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGS 230

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ +F+ CG + +A   F+E   +++  WN +++G+   G  ++A++   DM+L  V+PD
Sbjct: 231 ILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPD 290

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA---NALMDMYVKCGKLESAEE 236
           +VT   ++S  AQ        +  +++   GL    P      AL+    + G    A  
Sbjct: 291 QVTWNAIISGYAQSGQFEEASK--YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALS 348

Query: 237 IFDSMV-----------NKTVVSCTT-----------------------MIVG------Y 256
           +F  MV              V +CT                        ++VG      Y
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT-- 314
           AK   +++AR+ F  + +  +V WNA++ GY      +EA+ L  EM+  GI+PD +T  
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468

Query: 315 --------------------TVH-------------CLSACSQLGALDDGIWIHRFIEKE 341
                                +H              L+AC Q+  L  G  IH ++ + 
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRN 528

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           +  L+  +G+AL+ MY+ C ++  A  VF E+  R+ + + +II   A  G++++A+   
Sbjct: 529 HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 588

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLL 459
            EM    +  + +T +  L AC     + +G++       I R      ++  + ++D+ 
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH---QFIIRCGLDTCNFILNSLIDMY 645

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           GR G ++++ ++   MP   D+V W  +     +HG
Sbjct: 646 GRCGSIQKSRRIFDLMPQ-RDLVSWNVMISVYGMHG 680



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 199/411 (48%), Gaps = 43/411 (10%)

Query: 75  TRPDNFT--YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           T PD     Y  + + C  L    LG+++   ++  G DV  ++ + ++ V+   G +  
Sbjct: 83  TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FD+   RN+ SW +++  +   G   E I+LF  M  E V PD      +  AC++
Sbjct: 143 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 202

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L++  +G++++ Y+   G      +  +++DM++KCG+++ A   F+ +  K V     M
Sbjct: 203 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 262

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGYVQAKR----SK---------- 294
           + GY   G    A K   D+    V P    WNAII GY Q+ +    SK          
Sbjct: 263 VSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKD 322

Query: 295 ----------------------EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EAL++F +M   G+KP+++T    +SAC+ L  L  G 
Sbjct: 323 FKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382

Query: 333 WIHRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            IH + I+ E  + ++++G +LVD YAKC ++  A + F  + + + +++ A++ G AL 
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           G   +AI   SEM   G+ PD IT+ G+++     G      ++F +M S+
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM 493



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 41/342 (11%)

Query: 142 VRNLVSWNSLINGFV------RSGFPREAIRLFRDMQLERVEPDEVTMI--GMVSACAQL 193
           +R L +    I GF       R+G    A  L   M L    PDE   I   ++  C +L
Sbjct: 45  LRKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDL--TNPDECIEIYASILQKCRKL 102

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            +L LG ++H  +  +G+ +   L + L+++Y + G +E A  +FD M            
Sbjct: 103 YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM------------ 150

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                               E+ V  W AI+  Y      +E + LF+ M   G++PD  
Sbjct: 151 -------------------SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHF 191

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
                  ACS+L     G  ++ ++    F  N  +  +++DM+ KCG +  A + F E+
Sbjct: 192 VFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 251

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             ++   +  ++ G    G+   A+   S+M   G+ PD++T+  I+S     G  +E  
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           KYF +M  +    P +  ++ ++    ++G   EA  + R M
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 21/251 (8%)

Query: 296 ALALFHEMQATGIKPDAVTTVHC--LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
           A  L   M  T   PD    ++   L  C +L  L  G  +H  +     ++   LG+ L
Sbjct: 73  AAMLLSSMDLT--NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRL 130

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           +++Y + G +  A ++F +M ERN  ++TAI+      G   + I  F  M+  G+ PD 
Sbjct: 131 LEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDH 190

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
             F  +  AC        G+  +  M SI F  +  +K    ++D+  + G ++ A +  
Sbjct: 191 FVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK--GSILDMFIKCGRMDIARRFF 248

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGER-------AAMKLLELDPQDSGIYVLLANMY 525
             +    DV +W  +     + G  S GE        + MKL  + P D   +  + + Y
Sbjct: 249 EEIEF-KDVFMWNIM-----VSGYTSKGEFKKALKCISDMKLSGVKP-DQVTWNAIISGY 301

Query: 526 RDSNMWEEAGK 536
             S  +EEA K
Sbjct: 302 AQSGQFEEASK 312


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 322/569 (56%), Gaps = 13/569 (2%)

Query: 2   TITGLISHGFAPSR--LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
            +T  I   FA SR   +A  A    +N   C+     V++P  F WN  I+        
Sbjct: 20  NLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDP--FLWNAVIKSHSHGVDP 77

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           + A+  +  ML NG    D F+  L+ K C+ LG    G +I G + K G   D+++ N 
Sbjct: 78  KRALIWFCLMLENG-VSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNC 136

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I +++ CG LG A  +FD    R+ VS+NS+I+G+V+ G    A  LF  M  E    +
Sbjct: 137 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEM--KN 194

Query: 180 EVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
            ++   M+S  AQ  D +N+  ++   + E  L       N+L+D YVK G++E A+++F
Sbjct: 195 LISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW----NSLIDGYVKHGRMEDAKDLF 250

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ K + EAL 
Sbjct: 251 YVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALE 310

Query: 299 LFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
           +F +M+  + + PD  T V  LSA +QLG L   + +H +I ++ F L   LG AL+DMY
Sbjct: 311 IFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMY 370

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +KCG+I +A+ VF  +  ++   + A+IGGLA+HG    A     E+    + PD+ITF+
Sbjct: 371 SKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFV 430

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           GIL+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+ LI  MPM
Sbjct: 431 GILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPM 490

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             + V+W     AC  H     GE  A  L+     +   YVLL+NMY    MW++A +V
Sbjct: 491 EPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWKDARRV 550

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           R MM+ER ++K PGCS IE++G ++EF V
Sbjct: 551 RTMMKERELQKVPGCSWIELDGRVHEFFV 579


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 193/488 (39%), Positives = 289/488 (59%), Gaps = 3/488 (0%)

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGL---ACNVFDESCVRNLVSWNSLINGFVRSGF 160
           H L +   +  +  +    +F    D G    A  +FDE    +L+S+ SL++  ++   
Sbjct: 34  HALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDN 93

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            REAI LF  +      PD   ++G +SA +   D  +GR +H  I   GL   V + NA
Sbjct: 94  QREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNA 153

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMY +CGK ESA ++FD M  K  V+  +M+ GY K   +D A   FD +P + VV W
Sbjct: 154 LIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAW 213

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I G+VQ ++   AL LF  M   G +P  VT V  LSAC+ +GALD G  IH +  K
Sbjct: 214 TALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSK 273

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
            N +LN+++  AL+DMYAK G+I  A  VF E+  ++S T+T +I    + G    A+  
Sbjct: 274 CNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALEL 333

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F +M+  G++P+ +TF+ +LSAC H GL++EG + F +M  ++++ P L+HY CM+DLLG
Sbjct: 334 FQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLG 393

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R GLLEEAE LI  M +  D+V+W +L  AC + GN  + E A  ++++ +P D G+YVL
Sbjct: 394 RGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVL 453

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L NMY  SN W EA ++R+ M    + K PGCS IE++G ++EF+V DK+H    +IY+ 
Sbjct: 454 LWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVHEFLVEDKTHDARREIYET 513

Query: 581 LVQLTRHF 588
           L  ++R  
Sbjct: 514 LEYMSRQL 521



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 67/361 (18%)

Query: 7   ISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           I+HG  P +    C I    ++   +    K+   + NP+  S+   +   L+    REA
Sbjct: 38  IAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREA 97

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + L+ +++   G RPD F         +  G + +G  + G + +LG D ++ V NA+I 
Sbjct: 98  ISLFARVV-AAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALID 156

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG----------------------- 159
           ++  CG    A  VFD   +++ V+W S+++G+++                         
Sbjct: 157 MYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTAL 216

Query: 160 --------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
                    P  A+ LF  M LE   P  VT++G++SACA +  L+LGR IH Y S+   
Sbjct: 217 ITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNA 276

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           +L + ++NALMDMY K G +E A  +F  + +K   + TTMI      G           
Sbjct: 277 SLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQG----------- 325

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                                 K+AL LF +M   G+ P++VT V  LSACS  G +++G
Sbjct: 326 --------------------DGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEG 365

Query: 332 I 332
           I
Sbjct: 366 I 366



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 20/279 (7%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +W   I G ++  +   A++L+ +M+  G  RP + T   +   CA +G   LG  I G+
Sbjct: 212 AWTALITGHVQGRQPVRALELFGRMVLEG-HRPTHVTIVGVLSACADIGALDLGRVIHGY 270

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
             K    +++ V NA++ ++   G + +A +VF E   ++  +W ++I+     G  ++A
Sbjct: 271 GSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKA 330

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN---AL 221
           + LF+DM    V P+ VT + ++SAC+    +  G E+   + +  L    PL      +
Sbjct: 331 LELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQ--LYKIDPLLEHYGCM 388

Query: 222 MDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK----- 275
           +D+  + G LE AE +   M V   +V   +++      G   +A     ++ ++     
Sbjct: 389 IDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDD 448

Query: 276 --YVVPWNAIIGGYVQAKRSKEALALFHEMQATGI--KP 310
             YV+ WN     Y  + + +EA  +  +M +  I  KP
Sbjct: 449 GVYVLLWNM----YASSNKWREAREMRQQMLSLKIFKKP 483


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 306/559 (54%), Gaps = 32/559 (5%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           +   Y   +  + Q PN F +N  I GF+      E +DL+   +R  G     FT+PL+
Sbjct: 59  RQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLS-IRKHGLNLHGFTFPLV 117

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K C     R LG ++   V+K GF+ D+    +++ ++   G L  A  VF+E   R++
Sbjct: 118 LKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSV 177

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           V+W +L +G+  +G  REAI LF+ M    V PD   ++ ++SAC  + DL+ G    W 
Sbjct: 178 VTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGE---WI 234

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           +                        +E  E   +S V  T+V+       YAK G ++ A
Sbjct: 235 VKH----------------------MEEMEMQKNSFVRTTLVNL------YAKCGKMEKA 266

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           R +FD + EK +V W+ +I GY      KE +  F +M    +KPD  + V  LS+C+ L
Sbjct: 267 RSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASL 326

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           GALD G W    I++  F  N+ +  AL+DMYAKCG +A+  +VF EM E++ +   A I
Sbjct: 327 GALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            GLA +G    + + F +   +G+ PD  TFLG+L  C H GL+ +G ++F  +S ++ L
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYAL 446

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
              ++HY CMVDL GR+G+L++A +LI  MPM  + +VWGAL   CRL  +  + E    
Sbjct: 447 KRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLK 506

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           +L+ L+P ++G YV L+N+Y  S  W+EA +VR MM  +G++K PG S IE+ G ++EF+
Sbjct: 507 ELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFL 566

Query: 566 VRDKSHPELEQIYDCLVQL 584
             DKSHP  ++IY  L  L
Sbjct: 567 ADDKSHPLSDKIYAKLEDL 585



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 197/447 (44%), Gaps = 61/447 (13%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S S  L+   K+   +   +  +W     G+   GK REA+DL+K+M+   G RPD++  
Sbjct: 157 SGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEM-GVRPDSYFI 215

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C  +G    G  I  H+ ++    + +V   +++++  CG +  A +VFD    
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGE 275

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++V+W+++I G+  + FP+E I  F  M  E ++PD+ +++G +S+CA L  L+LG   
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
              I        + +ANAL+DMY KCG +    E+F  M  K +V     I G AK G +
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                          K + A+F + +  GI PD  T +  L  C
Sbjct: 396 -------------------------------KLSFAVFGQTEKLGISPDGSTFLGLLCGC 424

Query: 323 SQLGALDDGIWIHRFIEKEN----FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-N 377
              G + DG+   RF    +        V     +VD++ + G +  A ++  +MP R N
Sbjct: 425 VHAGLIQDGL---RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPN 481

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           ++ + A++ G  L      A +   E+I                      L       + 
Sbjct: 482 AIVWGALLSGCRLVKDTQLAETVLKELI---------------------ALEPWNAGNYV 520

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGL 464
           Q+S+I+ +S +    + + D++ R G+
Sbjct: 521 QLSNIYSVSGRWDEAAEVRDMMNRKGM 547


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/548 (36%), Positives = 304/548 (55%), Gaps = 33/548 (6%)

Query: 38   VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
            +  P+  SWN  I G +  G     ++++ QML   G   D  T   +    A++G   L
Sbjct: 531  LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI-LGVEVDLTTLVSVLVAWANIGNLSL 589

Query: 98   GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
            G  + G  +K  F  ++   N ++ ++  CG+L  A  VF +     +VSW S I  +VR
Sbjct: 590  GRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVR 649

Query: 158  SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
             G   +AI LF +MQ + V PD  T+  +V ACA    L+ GR++H Y+ ++G+   +P+
Sbjct: 650  EGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPV 709

Query: 218  ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
             NAL++MY KCG +E A                               R +F  +P K +
Sbjct: 710  TNALINMYAKCGSVEEA-------------------------------RLVFSKIPVKDI 738

Query: 278  VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
            V WN +IGGY Q     EAL LF +MQ    KPD +T    L AC+ L ALD G  IH  
Sbjct: 739  VSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGH 797

Query: 338  IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
            I +  +  ++ +  ALVDMYAKCG +  A  +F  +P+++ +++T +I G  +HG   +A
Sbjct: 798  ILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 857

Query: 398  ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
            IS F+EM   G+ PDE +F  IL+AC H GL++EG K+F  M +   + PKL+HY+C+VD
Sbjct: 858  ISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 917

Query: 458  LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
            LL R G L +A + I SMP+  D  +WG L   CR+H +V + E+ A  + EL+P ++  
Sbjct: 918  LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRY 977

Query: 518  YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
            YV+LAN+Y ++  WEE  K+RK M++RG ++ PGCS IEV G    F+  +  HP+ ++I
Sbjct: 978  YVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRI 1037

Query: 578  YDCLVQLT 585
               L +LT
Sbjct: 1038 DVLLRKLT 1045



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 189/371 (50%), Gaps = 35/371 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  NL+  T++   + +    SW   I  ++  G   +A+ L+ +M ++ G RPD +T 
Sbjct: 617 SKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTV 675

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA       G ++  +V+K G   ++ V NA+I+++  CG +  A  VF +  V
Sbjct: 676 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 735

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++VSWN++I G+ ++  P EA+ LF DMQ ++ +PD++TM  ++ ACA L  L+ GREI
Sbjct: 736 KDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREI 794

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +I   G    + +A AL+DMY KCG L  A+ +FD +  K ++S T MI GY   GF 
Sbjct: 795 HGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF- 853

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                           EA++ F+EM+  GI+PD  +    L+AC
Sbjct: 854 ------------------------------GNEAISTFNEMRIAGIEPDESSFSVILNAC 883

Query: 323 SQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT- 380
           S  G L++G      +  E      +     +VD+ A+ GN++KA +    MP +   T 
Sbjct: 884 SHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTI 943

Query: 381 YTAIIGGLALH 391
           +  ++ G  +H
Sbjct: 944 WGVLLSGCRIH 954



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 198/441 (44%), Gaps = 36/441 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           N  I  F E G +R A++L   + ++        +Y  + ++CA       G  +   ++
Sbjct: 340 NAKINKFCEMGDLRNAIEL---LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVII 396

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
             G  +D  +   ++ ++V+CGDL     +FD+     +  WN L++ + + G  RE++ 
Sbjct: 397 SNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 456

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           LF+ MQ   V  +  T   ++   A L  +   + +H Y+ + G      + N+L+  Y 
Sbjct: 457 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYF 516

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K G +ESA  +FD +    VVS                               WN++I G
Sbjct: 517 KFGGVESAHNLFDELSEPDVVS-------------------------------WNSMING 545

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            V    S   L +F +M   G++ D  T V  L A + +G L  G  +H F  K  F+  
Sbjct: 546 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEE 605

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           VV    L+DMY+KCGN+  A +VF +M +   +++T+ I      G   DAI  F EM  
Sbjct: 606 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS 665

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            G+ PD  T   I+ AC     +D+GR   + +     +   L   + ++++  + G +E
Sbjct: 666 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVE 724

Query: 467 EAEQLIRSMPMAADVVVWGAL 487
           EA  +   +P+  D+V W  +
Sbjct: 725 EARLVFSKIPV-KDIVSWNTM 744


>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
 gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
          Length = 377

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 171/368 (46%), Positives = 262/368 (71%), Gaps = 3/368 (0%)

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY KCG L  A +IFD M +K V+  T+M+ GY  +G LD AR++F+  P K VV W A+
Sbjct: 1   MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I GYVQ     EA+ALF EMQ   +KPD    V  L+ C+Q+GAL+ G WIH +I+++  
Sbjct: 61  INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGI 120

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
            ++ V+GT+L++MY+KCG I KAL++F  + E+++ T+T+II GLA++GK   A+  FS+
Sbjct: 121 PVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSK 180

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M  V  +PDE+TF+G+LSAC HGGLV+EGR++F  M+SI+ + PKL+HY C++DLLGR+G
Sbjct: 181 MKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAG 240

Query: 464 LLEEAEQLIRSMPMAADVVV---WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
            L+EAE+LI+ +  A + ++   +G+L  ACR++ NV +GER A +L++++ +DS ++ L
Sbjct: 241 QLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTL 300

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           LAN+Y  +  W +  +VR+ M++ GV+K PGCSSIEV+G+++EF+V + S  E+ +IY  
Sbjct: 301 LANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVDGIVHEFLVGNPSCSEMREIYSM 360

Query: 581 LVQLTRHF 588
           L ++   F
Sbjct: 361 LDRMRLDF 368



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 136/272 (50%), Gaps = 32/272 (11%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
            +++  +V+ G+L  A  +F+ S V+++V W ++ING+V+     EA+ LF++MQ++RV+
Sbjct: 27  TSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVK 86

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD+  ++ +++ CAQ+  L  G  IH YI E G+ +   +  +L++MY KCG +E A  I
Sbjct: 87  PDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRI 146

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  +  K   + T++I G A  G                               ++ +AL
Sbjct: 147 FCGLREKDTATWTSIICGLAMNG-------------------------------KTSKAL 175

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDM 356
            LF +M+     PD VT +  LSACS  G +++G  + +      N    +     L+D+
Sbjct: 176 ELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDL 235

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             + G + +A ++  ++   N+     + G L
Sbjct: 236 LGRAGQLDEAEELIKKIVNANNEIIVPLYGSL 267



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 2/199 (1%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           W   I G+++     EAV L+++M +    +PD F    L   CA +G    G  I G++
Sbjct: 57  WTAMINGYVQFNHFDEAVALFQEM-QIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYI 115

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            + G  VD  V  ++I ++  CG +  A  +F     ++  +W S+I G   +G   +A+
Sbjct: 116 DEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKAL 175

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDM 224
            LF  M+     PDEVT IG++SAC+    +  GRE  +   S   +   +     L+D+
Sbjct: 176 ELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDL 235

Query: 225 YVKCGKLESAEEIFDSMVN 243
             + G+L+ AEE+   +VN
Sbjct: 236 LGRAGQLDEAEELIKKIVN 254


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 190/449 (42%), Positives = 280/449 (62%), Gaps = 3/449 (0%)

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDL 196
            S +  +VSW S I    R+G   EA   F  MQ+  V P+ +T + ++SAC    LE L
Sbjct: 48  HSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGL 107

Query: 197 NLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
             G  IH Y+ + GL T  V +  AL+DMY KCG+L+ A  +FD M  +  VS  TMI G
Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDG 167

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
             + G +  A  +FD + E+  + W ++IGG+V+    ++AL  F EMQ  G++PD VT 
Sbjct: 168 CMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTI 227

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  L+AC+ LGAL  G+WI+RF+ K++F  N+ +  +L+DMY++CG I  A QVF +MP+
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+ +++ ++I G AL+G A +A+ +F+ M   G  PD ++F G L+AC H GLVDEG ++
Sbjct: 288 RSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQF 347

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M    ++SP+++HY C+VDL  R+G LE+A  +I +MPM  + VV G+L  ACR HG
Sbjct: 348 FDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHG 407

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           +V + ER    L E+DP     YVLL+N+Y     W+ A KVRK M+  G+ K PG SSI
Sbjct: 408 DVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSI 467

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E++G ++EF+  DK+H E + IY  L  L
Sbjct: 468 EMDGSIHEFVAGDKTHVETQNIYAMLDHL 496



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 70/385 (18%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL---GLRFLGYEI 101
           SW  +I      G++ EA   + +M +  G RP++ T+  L   C      GLRF G  I
Sbjct: 56  SWTSSIALHCRNGQLPEAAAEFSRM-QIAGVRPNHITFLTLLSACTDFPLEGLRF-GGSI 113

Query: 102 FGHVLKLGFDVD-MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN----------- 149
             +V KLG D + + V  A++ ++  CG L LA  +FDE  VRN VSWN           
Sbjct: 114 HAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE 173

Query: 150 --------------------SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
                               S+I GFV+ G   +A+  FR+MQL  VEPD VT+I +++A
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAA 233

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           CA L  L LG  I+ ++ +      + ++N+L+DMY +CG +  A ++F+ M  +++VS 
Sbjct: 234 CANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSW 293

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            +MIVG+A  G                                ++EAL  F+ M+  G +
Sbjct: 294 NSMIVGFALNG-------------------------------HAEEALEFFNLMRKEGFR 322

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           PD V+    L+ACS  G +D+G+     +++    +  +     LVD+Y++ G +  AL 
Sbjct: 323 PDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALN 382

Query: 369 VFHEMPER-NSLTYTAIIGGLALHG 392
           V   MP + N +   +++     HG
Sbjct: 383 VIANMPMKPNEVVLGSLLAACRTHG 407



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 31/234 (13%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQM------------------------------LR 71
           NS SWN  I G +  G++ EA+ L+ QM                              ++
Sbjct: 157 NSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQ 216

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
             G  PD  T   +   CA+LG   LG  I   V+K  F  ++ + N++I ++  CG + 
Sbjct: 217 LAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIR 276

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191
           LA  VF++   R+LVSWNS+I GF  +G   EA+  F  M+ E   PD V+  G ++AC+
Sbjct: 277 LARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACS 336

Query: 192 QLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
               ++ G +    +  +  ++  +     L+D+Y + G+LE A  +  +M  K
Sbjct: 337 HSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMK 390


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 212/623 (34%), Positives = 330/623 (52%), Gaps = 58/623 (9%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNP----NSFSWNVAIRGFLETGKMREAVDLYKQM 69
           +R     A S + N +   +I F    P    ++  +N  I G+        A++L++ +
Sbjct: 83  ARTTLIAAHSSAGNSNLAREIFF--ATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL 140

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGL----RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           LRNG  RPDNFT+     V  +L L         +I   V+K G      V NA++ VFV
Sbjct: 141 LRNG-FRPDNFTFT---SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 126 SCGD---------LGLACNVFDESCVRN-------------------------------L 145
            C           +  A  +FDE   R+                               +
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLV 256

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           V+WN++I+G+V  GF  EA+ +FR M L  ++ DE T   ++SACA       G+++H Y
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 206 I----SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           I        L  ++ + NAL  +Y KCGK++ A ++F+ M  K +VS   ++ GY   G 
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +D A+  F+++PE+ ++ W  +I G  Q    +E+L LF+ M++ G +P        + A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ L AL  G  +H  + +  F+ ++  G AL+ MYAKCG +  A  +F  MP  +S+++
Sbjct: 437 CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSW 496

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            A+I  L  HG    A+  F  M+   ++PD ITFL +LS C H GLV+EG +YF  MS 
Sbjct: 497 NAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSG 556

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           ++ + P   HY+ M+DLL R+G   EA+ +I +MP+     +W AL   CR+HGN+ +G 
Sbjct: 557 LYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGI 616

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
           +AA +L EL PQ  G YVLL+NMY     W++  KVRK+M ++GV+K PGCS IEV   +
Sbjct: 617 QAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKV 676

Query: 562 YEFIVRDKSHPELEQIYDCLVQL 584
           + F+V D  HPE++ +Y+ L +L
Sbjct: 677 HVFLVDDIVHPEVQAVYNYLEEL 699



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 219/488 (44%), Gaps = 84/488 (17%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES-------------------- 140
           +  H++  GF    Y+ N +I V+    DL  A ++FDE                     
Sbjct: 37  VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGN 96

Query: 141 -------------CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
                         +R+ V +N++I G+  +     AI LFRD+      PD  T   ++
Sbjct: 97  SNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL 156

Query: 188 SACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK---------LESAEEI 237
            A A + ED    ++IH  + +SG      + NAL+ ++VKC           + +A ++
Sbjct: 157 GALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKL 216

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M  +  +S TTMI GY + G LD AR+  D + EK VV WNA+I GYV      EAL
Sbjct: 217 FDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEAL 276

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI----EKENFNLNVVLGTAL 353
            +F +M   GI+ D  T    LSAC+  G    G  +H +I     + + + ++ +  AL
Sbjct: 277 EMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNAL 336

Query: 354 VDMYAKCGNIAKALQVFH-------------------------------EMPERNSLTYT 382
             +Y KCG + +A QVF+                               EMPERN LT+T
Sbjct: 337 ATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWT 396

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            +I GLA +G   +++  F+ M   G  P +  F G + AC     +  GR+  AQ+  +
Sbjct: 397 VMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRL 456

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
                 L   + ++ +  + G++E A  L  +MP   D V W A+  A   HG+ +    
Sbjct: 457 -GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSVSWNAMIAALGQHGHGA---- 510

Query: 503 AAMKLLEL 510
            A++L EL
Sbjct: 511 QALELFEL 518



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 175/402 (43%), Gaps = 60/402 (14%)

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           ++ R +H ++  SG      + N L+D+Y K   L SA  +FD +    +V+ TT+I  +
Sbjct: 32  SIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAH 91

Query: 257 AKFGFLDIARKIFDDLPE--KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           +  G  ++AR+IF   P   +  V +NA+I GY        A+ LF ++   G +PD  T
Sbjct: 92  SSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFT 151

Query: 315 TVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCG---------NIA 364
               L A + +   +     IH  + K        +  AL+ ++ KC           +A
Sbjct: 152 FTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMA 211

Query: 365 KALQVFHEMPERNSLTYT-------------------------------AIIGGLALHGK 393
            A ++F EM ER+ L++T                               A+I G   HG 
Sbjct: 212 AARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----- 448
            L+A+  F +M  +G+  DE T+  +LSAC + G    G++  A    I R  P+     
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY---ILRTEPRPSLDF 328

Query: 449 -LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG--ERAAM 505
            L   + +  L  + G ++EA Q+   MP+  D+V W A+     L G V+ G  + A  
Sbjct: 329 SLSVNNALATLYWKCGKVDEARQVFNQMPV-KDLVSWNAI-----LSGYVNAGRIDEAKS 382

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
              E+  ++   + ++ +    +   EE+ K+   M+  G E
Sbjct: 383 FFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFE 424


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 327/591 (55%), Gaps = 36/591 (6%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S  L     +   + + ++ SW + I G   +G+  +AV  +  M+  G   P  FT 
Sbjct: 292 AKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFA-PSQFTL 350

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD------------- 129
             +   CA++    +G ++   V+KLG    + V N+V++++  CGD             
Sbjct: 351 TNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQV 410

Query: 130 ------------------LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RD 170
                             + LA ++F+    R++VSWN++I G+ ++G    A++ F R 
Sbjct: 411 RSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRM 470

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           +    +EPD  T+  ++SACA L  L +G+++H YI  +G+  +  + NAL+  Y K G 
Sbjct: 471 LSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGS 530

Query: 231 LESAEEIFDSMV--NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           +E+A  I D  V  +  V+S T ++ GY K G    AR+IFD +  + V+ W A+I GY 
Sbjct: 531 VETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYH 590

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           Q  ++ EA+ LF  M   G +P++ T    LSAC+ L  LD G  IH    +     +V 
Sbjct: 591 QNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVS 650

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           +  A++ +YA+ G++  A +VF ++  R  ++T+T++I  +A HG    A+  F EM+ V
Sbjct: 651 VSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRV 710

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
           G+ PD IT++G+LSAC H G VD+G++Y+ QM +   + P++ HY+CMVDL  R+GLL E
Sbjct: 711 GVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTE 770

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527
           A + I+ MP+A D VVWG+L  ACR+  N  + E AA KLL +DP +SG Y  LAN+Y  
Sbjct: 771 AHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSA 830

Query: 528 SNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
              W +A ++ K+ +++GV+K  G S   V G ++ F   D  HP+ + IY
Sbjct: 831 CGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIY 881



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 217/433 (50%), Gaps = 40/433 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           + +  N+++ ++   G L  A  VF E   R+ VSW  +I G  RSG   +A++ F DM 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            E   P + T+  ++S+CA +E   +GR++H ++ + GL+  VP+AN+++ MY KCG  E
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  ++V S   M+  Y   G +++A  +F+++ E+ +V WN II GY Q   
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 293 SKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-------- 343
              AL  F  M  A+ ++PDA T    LSAC+ L  L  G  +H +I +           
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 344 -------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
                                    +LNV+  TAL++ Y K G+  +A ++F  M  R+ 
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +TA+I G   +G+  +A+  F  MI +G  P+  T   +LSAC     +D G++   +
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCK 639

Query: 439 -MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            + S+   S  +   + ++ +  RSG +  A ++   +    + + W ++  A   HG  
Sbjct: 640 AIRSLQEQSVSVS--NAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG-- 695

Query: 498 SIGERAAMKLLEL 510
            +GE+A +   E+
Sbjct: 696 -LGEQAVVLFEEM 707



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 47/352 (13%)

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY----VKCGKLESAEEIFDSM--VN 243
           C    + + GR IH +  ++GL ++  L N L+  Y    V  G    A  +FD +    
Sbjct: 219 CRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYAR 278

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +   +  +++  YAK G L  A  +F ++P++  V W  +I G  ++ R  +A+  F +M
Sbjct: 279 RNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM 338

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            + G  P   T  + LS+C+ + A   G  +H F+ K   +  V +  +++ MY KCG+ 
Sbjct: 339 VSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 364 AKALQVFHEMP-------------------------------ERNSLTYTAIIGGLALHG 392
             A  VF  M                                ER+ +++  II G   +G
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNG 458

Query: 393 KALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPKL 449
               A+ +FS M+    M PD  T   +LSAC +  ++  G++     S I R  +    
Sbjct: 459 LDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMH---SYILRTGMPCSS 515

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           +  + ++    +SG +E A +++    + AD+ V   + F   L G V +G+
Sbjct: 516 QIMNALISTYAKSGSVETARRIM-DQAVVADLNV---ISFTALLEGYVKLGD 563


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 209/620 (33%), Positives = 324/620 (52%), Gaps = 69/620 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISE--SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +GL++  FA SRL+ F + +      + +  ++L  V+ PN+FS N  ++  L  G    
Sbjct: 30  SGLLADAFAASRLLLFTSATRLLPFPIHHSFRLLRLVRCPNAFSCNTLLKAALLAGMPHL 89

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA-- 119
            + LY  +       PD +T+P+L   CA+      G ++  H ++ GF  D+Y+ NA  
Sbjct: 90  CLPLYTSL----PASPDTYTHPILAAACAARRDVSEGRQVQSHAIRHGFGDDLYLRNALM 145

Query: 120 -----------------------------VIHVFVSCGDLGLACNVF------------- 137
                                        ++  +V  GD+  A  VF             
Sbjct: 146 HMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSS 205

Query: 138 ------------------DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
                             DE+  R++ +W ++I+ F R+    EA+ +F  M+ E    D
Sbjct: 206 MVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVD 265

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E  M+ +V+ACAQ E +  G   H  +  +GL   + + N L+ MY  C  + +A  +FD
Sbjct: 266 EALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFD 325

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           S       S  +MI GY K G ++ A  +F  +P+K  V W+ +I G VQ  +S  AL +
Sbjct: 326 SGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTV 385

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F  M+A G++PD VT V  +SAC+ L AL+ G  +H ++ +    + +VLGT+L+DMY K
Sbjct: 386 FDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMK 445

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM-IGVGLMPDEITFLG 418
           CG +  A+ VF+ M E+ +  + A+I GLA++G    ++  FSEM      +P+EITF G
Sbjct: 446 CGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTG 505

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC H GLV+EGR +F  M   +++ P ++HY CMVDLLGR+G ++EAE LI SMPM+
Sbjct: 506 VLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMS 565

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            DV  WGAL  AC  HG   +GER   KL+ LDP+  G   +L+N+Y    MW+    +R
Sbjct: 566 PDVPAWGALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLR 625

Query: 539 KMMEERGVEKTPGCSSIEVN 558
             M++R V K  G S +E++
Sbjct: 626 DSMKQRHVPKVSGYSVVEMS 645



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 107/241 (44%), Gaps = 19/241 (7%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           I G + +G   + +  F A+ +  N+                SW+  I G ++  +   A
Sbjct: 339 IAGYLKNGHVENAMTLFSAMPDKDNV----------------SWSTMISGCVQNNQSSHA 382

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++  M R  G RPD  T   +   C +L     G  +  +V +    + + +  ++I 
Sbjct: 383 LTVFDNM-RAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLID 441

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEV 181
           +++ CG L  A +VF+    +    WN++I G   +G   +++ +F +M+      P+E+
Sbjct: 442 MYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEI 501

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T  G++SAC     +  GR     +     +   +     ++D+  + G ++ AE++ +S
Sbjct: 502 TFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIES 561

Query: 241 M 241
           M
Sbjct: 562 M 562


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 313/560 (55%), Gaps = 44/560 (7%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V   + +SWN  I  F  +G   +A+  +  M R     P+  T+P   K C+SL     
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSM-RKLSLHPNRSTFPCTIKSCSSLYDLCA 104

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G +I       G+  D++V +A+I ++  CG L  A  +FDE   RN+VSW S+I+G+V+
Sbjct: 105 GKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 158 SGFPREAIRLFRDMQL-ERVEPDEV---------TMIG-MVSACAQLEDLNLGREIHWYI 206
           +   REA+ LF++  L +  + DE+          ++G ++SACA++   ++   +H   
Sbjct: 165 NERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLA 224

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G    + + N LMD Y KCG+                               + ++R
Sbjct: 225 VKKGFEGCLAVGNTLMDAYAKCGE-------------------------------ISVSR 253

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQL 325
           K+FD + E  V  WN++I  Y Q   S EA +LF +M   G ++ +AVT    L AC+  
Sbjct: 254 KVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHS 313

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           GAL  G  IH  + K     N+V+GT++VDMY KCG +  A + F  +  +N  ++T ++
Sbjct: 314 GALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMV 373

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G  +HG   +A+  F EMI  G+ P+ ITF+ +L+AC H GL+ EG  +F +M   F +
Sbjct: 374 AGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDV 433

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P ++HYSCMVDLLGR+G L+EA  LI+ M +  D +VWG+L  ACR+H NV +GE +A 
Sbjct: 434 EPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISAR 493

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           KL +LDP + G YVLL+N+Y D+  W++  ++R +M+  G+ KTPG S +E  G ++ F+
Sbjct: 494 KLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFL 553

Query: 566 VRDKSHPELEQIYDCLVQLT 585
           V DK HP+ E+IY+ L +L 
Sbjct: 554 VGDKEHPQHEKIYEYLDELN 573



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 185/402 (46%), Gaps = 46/402 (11%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           + G  S  F  S LI     S+   L+   K+   +   N  SW   I G+++  + REA
Sbjct: 114 VFGYGSDIFVASALIDM--YSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREA 171

Query: 63  VDLYKQMLRNGGT----------RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV 112
           V L+K+ L    T            D+     +   CA + ++ +   + G  +K GF+ 
Sbjct: 172 VFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEG 231

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM- 171
            + V N ++  +  CG++ ++  VFD     ++ SWNSLI  + ++G   EA  LF DM 
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           +   V  + VT+  ++ ACA    L +G+ IH  + +  L   + +  +++DMY KCG++
Sbjct: 292 KRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRV 351

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           E A + FD +  K V S T M+ GY   G                               
Sbjct: 352 EMARKAFDRLKRKNVKSWTVMVAGYGMHG------------------------------- 380

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLG 350
             KEA+ +F+EM   GIKP+ +T V  L+ACS  G L +G  W ++   + +    +   
Sbjct: 381 HGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHY 440

Query: 351 TALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
           + +VD+  + G + +A  +  EM  + + + + +++G   +H
Sbjct: 441 SCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIH 482


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 305/544 (56%), Gaps = 36/544 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  + G     +  EAV L+ +M+  G    D  T   +  +C  LG R L   +  +
Sbjct: 137 AWNAMLSGLCRNARAAEAVGLFGRMVMEG-VAGDAVTVSSVLPMCVLLGDRALALAMHLY 195

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G D +++V NA+I V+   G L     VFD    R+LV+WNS+I+G  + G    A
Sbjct: 196 AVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASA 255

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMD 223
           + +F  M+   V PD +T++ + SA AQ  D+  GR +H Y+   G  +   +A NA++D
Sbjct: 256 VEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVD 315

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY K  K+E+A+                               ++FD +P +  V WN +
Sbjct: 316 MYAKLSKIEAAQ-------------------------------RMFDSMPVRDAVSWNTL 344

Query: 284 IGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY+Q   + EA+ ++  MQ   G+KP   T V  L A S LGAL  G  +H    K  
Sbjct: 345 ITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTG 404

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            NL+V +GT ++D+YAKCG + +A+ +F + P R++  + A+I G+ +HG    A+S FS
Sbjct: 405 LNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFS 464

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M   G+ PD +TF+ +L+AC H GLVD+GR +F  M + + + P  KHY+CMVD+ GR+
Sbjct: 465 QMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRA 524

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G L++A   IR+MP+  D  +WGAL  ACR+HGNV +G+ A+  L ELDP++ G YVL++
Sbjct: 525 GQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMS 584

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS--HPELEQIYDC 580
           NMY     W+   +VR ++  + ++KTPG SSIEV   +  F   ++   HP+ E+I   
Sbjct: 585 NMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRE 644

Query: 581 LVQL 584
           L+ L
Sbjct: 645 LLDL 648



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 141/345 (40%), Gaps = 40/345 (11%)

Query: 149 NSLINGFVRSG----FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           N+LI+ F R+            L     L  + PD  T   ++ A    +      ++H 
Sbjct: 36  NTLISAFSRASLPRLALPLLRHLLLSSPLLPLRPDAFTFPPLLRAA---QGPGTAAQLHA 92

Query: 205 YISESGLTLTVPLAN-ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
                GL      A+ AL+  Y++ G++  A   FD M ++                   
Sbjct: 93  CALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHR------------------- 133

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
                  D+P      WNA++ G  +  R+ EA+ LF  M   G+  DAVT    L  C 
Sbjct: 134 -------DVPA-----WNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCV 181

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LG     + +H +  K   +  + +  A++D+Y K G + +  +VF  M  R+ +T+ +
Sbjct: 182 LLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNS 241

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           II G    G+   A+  F  M   G+ PD +T L + SA    G +  GR     M    
Sbjct: 242 IISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG 301

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
                +   + +VD+  +   +E A+++  SMP+  D V W  L 
Sbjct: 302 WDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPV-RDAVSWNTLI 345


>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 314/558 (56%), Gaps = 35/558 (6%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           DY   +L     P +FS+NVA+R F    + R  + L  +MLR    RPD +T P L   
Sbjct: 83  DYVHLLLTAHPTPTAFSFNVALR-FFAASRPRTTLQLSLRMLR-AALRPDAYTLPFLLLA 140

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
            A              + KLG     +  ++++ ++ + G    A  VFD    R++VSW
Sbjct: 141 AARCPAPAFAASAHALLQKLGLHNHDHTVHSLVTMYSNLGRPRAARRVFDGILRRDVVSW 200

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           NS+I  +  +G   +A R+FR M  E  V P+ VT+  +++AC    DL LGR +  ++ 
Sbjct: 201 NSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRWLEEWVK 260

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
             G+ +   + +AL+ MY KCG++  A                               R+
Sbjct: 261 SVGMEVGSLVGSALVGMYEKCGEMAEA-------------------------------RR 289

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD +  K  V WNA+I GY Q   SKEA++LFH M+  G +PD +T V  LSAC+ +GA
Sbjct: 290 VFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGA 349

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  + R+  +  F  NV +GTALVDMY+KCG++ +A+QVF ++P +N  ++ A+I G
Sbjct: 350 LELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICG 409

Query: 388 LALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           LA +G+  +AI  F  M    GL PD+ITF+G+LSAC H GL+ +GR++F  ++S F++ 
Sbjct: 410 LAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQII 469

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           PK++HYSCMVDLL R+G LEEA   I  +P   D V+ GAL  ACR   NV +  R   K
Sbjct: 470 PKIEHYSCMVDLLARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINK 529

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           ++ L+P +S  YV+ + +Y  S+  +++ ++R +M ERGV K PGCS IEV+G + EF  
Sbjct: 530 IMLLEPSNSWNYVVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCSWIEVSGRVLEFYA 589

Query: 567 RDKSHPELEQIYDCLVQL 584
            D+    +E +Y  L  L
Sbjct: 590 GDEPQHGVEDMYQLLDTL 607


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 201/580 (34%), Positives = 312/580 (53%), Gaps = 50/580 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL---GLRFLGYEIFG 103
           N  I  +        AV +++ +L +G  RPD++++  L      L    +R    ++  
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCA-QLHC 183

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSC----------------------------------GD 129
            VLK G    + V NA++ +++ C                                  GD
Sbjct: 184 SVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGD 243

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +G A +VF+E   +  V WN++I+G+V SG   EA  LFR M LERV  DE T   ++SA
Sbjct: 244 VGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSA 303

Query: 190 CAQLEDLNLGREIHW--------YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           CA +     G+ +H         ++ E+ L    P+ NAL+  Y KCG +  A  IFD+M
Sbjct: 304 CANVGLFAHGKSVHGQIIRLQPNFVPEAAL----PVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K VVS  T++ GY +   LD A ++F+++P K  + W  ++ GYV    +++AL LF+
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           +M++  +KP   T    ++AC +LGAL  G  +H  I +  F  +   G AL+ MYA+CG
Sbjct: 420 KMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCG 479

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            + +A  +F  MP  +S+++ A+I  L  HG   +A+  F  M+  G+ PD I+FL +L+
Sbjct: 480 AVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLVDEG +YF  M   F + P   HY+ ++DLLGR+G + EA  LI++MP     
Sbjct: 540 ACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            +W A+   CR  G++ +G  AA +L ++ PQ  G Y+LL+N Y  +  W +A +VRK+M
Sbjct: 600 SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLM 659

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
            +RGV+K PGCS IE    ++ F+V D  HPE  ++Y  L
Sbjct: 660 RDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFL 699



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 207/436 (47%), Gaps = 51/436 (11%)

Query: 118 NAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE- 174
            +++  + +   L  A + FD      R+ V  N++I+ + R+     A+ +FR +    
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGR--EIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            + PD+ +   ++SA   L ++++    ++H  + +SG    + + NAL+ +Y+KC   E
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 233 S---AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
           +   A ++ D M NK  ++ TTM+VGY + G +  AR +F+++  K+ V WNA+I GYV 
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK--ENFNLNV 347
           +  + EA  LF  M    +  D  T    LSAC+ +G    G  +H  I +   NF    
Sbjct: 272 SGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEA 331

Query: 348 VL--GTALVDMYAKCGNIA-------------------------------KALQVFHEMP 374
            L    ALV  Y+KCGNIA                               KA++VF EMP
Sbjct: 332 ALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            +N L++  ++ G    G A DA+  F++M    + P + T+ G ++AC   G +  G++
Sbjct: 392 YKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ 451

Query: 435 YFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
               +  + F  S      + ++ +  R G ++EA  +   MP   D V W A+  A   
Sbjct: 452 LHGHIVQLGFEGSNSAG--NALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQ 508

Query: 494 HGNVSIGERAAMKLLE 509
           HG+     R A++L +
Sbjct: 509 HGH----GREALELFD 520



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 179/387 (46%), Gaps = 75/387 (19%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I G++ +G   EA +L+++M+       D FT+  +   CA++GL   G  + G +
Sbjct: 262 WNAMISGYVHSGMAVEAFELFRRMVLER-VPLDEFTFTSVLSACANVGLFAHGKSVHGQI 320

Query: 106 LKLGF----DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS--- 158
           ++L      +  + V+NA++  +  CG++ +A  +FD   ++++VSWN++++G+V S   
Sbjct: 321 IRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCL 380

Query: 159 ----------------------------GFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
                                       GF  +A++LF  M+ E V+P + T  G ++AC
Sbjct: 381 DKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAAC 440

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            +L  L  G+++H +I + G   +    NAL+ MY +CG ++ A  +F  M N   VS  
Sbjct: 441 GELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVS-- 498

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                        WNA+I    Q    +EAL LF  M A GI P
Sbjct: 499 -----------------------------WNAMISALGQHGHGREALELFDRMVAEGIYP 529

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKA 366
           D ++ +  L+AC+  G +D+G    R+ E    +  ++ G    T L+D+  + G I +A
Sbjct: 530 DRISFLTVLTACNHSGLVDEGF---RYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 367 LQVFHEMP-ERNSLTYTAIIGGLALHG 392
             +   MP E     + AI+ G    G
Sbjct: 587 RDLIKTMPFEPTPSIWEAILSGCRTSG 613



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 164/398 (41%), Gaps = 61/398 (15%)

Query: 200 REIHWYISESGLTLTVP---LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           R +H  +  S L    P   L   L+ +Y     L +A  +F    +   VS T+++  Y
Sbjct: 41  RCLHARLLTSALLHAPPHPHLTLRLIHLYTLSRDLPAAATLF--CADPCPVSATSLVAAY 98

Query: 257 AKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPD-- 311
           A    L  A   FD +P   +  V  NA+I  Y +A  +  A+A+F  + A+G ++PD  
Sbjct: 99  AAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDY 158

Query: 312 -------------AVTTVHC---------------LSACSQLGAL------DDGIWIHRF 337
                         ++  HC               LS C+ L AL       +     R 
Sbjct: 159 SFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARK 218

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           +  E  N + +  T +V  Y + G++  A  VF E+  +  + + A+I G    G A++A
Sbjct: 219 VLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEA 278

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK------LKH 451
              F  M+   +  DE TF  +LSAC + GL   G+    Q   I RL P       L  
Sbjct: 279 FELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQ---IIRLQPNFVPEAALPV 335

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV--SIGERAAMKLLE 509
            + +V    + G +  A ++  +M +  DVV W  +     L G V  S  ++A     E
Sbjct: 336 NNALVTFYSKCGNIAVARRIFDNMTL-KDVVSWNTI-----LSGYVESSCLDKAVEVFEE 389

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           +  ++   ++++ + Y      E+A K+   M    V+
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVK 427


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 323/577 (55%), Gaps = 18/577 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNV---------QNPNSFSWNVAIR 51
           +  TG+I +    +R++   A S  + L    + +F           +  + F WN  I+
Sbjct: 19  LITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYSLPYGETEDPFLWNAVIK 78

Query: 52  GFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD 111
                   R ++ L+  ML NG    D F+  L+ K C+ LG    G  I G + K G  
Sbjct: 79  SHSHGTDPRRSLFLFCLMLENG-VSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLW 137

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
            D+++ N +I +++ CG LG +  VFD    R+ VS+NS+I+G+V+ G    A  LF  M
Sbjct: 138 SDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLM 197

Query: 172 QLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
             E    + ++   ++S  AQ  D +N+  ++   + E  L       N+++D YVK G+
Sbjct: 198 PKEM--KNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISW----NSMIDGYVKHGR 251

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +E A+++FD M  + V++  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ 
Sbjct: 252 IEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQN 311

Query: 291 KRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           K   EAL LF +M+  + + PD  T V  LSA +QLG L   + +H +I K+ F +   L
Sbjct: 312 KYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKL 371

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           G AL+DMY+KCG+I  A+ VF  +  +N   + AIIGGLA+HG    A     ++  + +
Sbjct: 372 GVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSI 431

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD+ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+
Sbjct: 432 KPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAK 491

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
            LI  MP+  + V+W     AC  H    +GE  A  L+     +   YVLL+NMY    
Sbjct: 492 ILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMYASCG 551

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           MW++  +VR MM+ER ++K PGCS IE++G ++EF V
Sbjct: 552 MWKDVRRVRTMMKERKIQKIPGCSWIELDGRVHEFFV 588


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 297/515 (57%), Gaps = 15/515 (2%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   +L + ++P+SFSW  AIR   + G+ +EA  LY QM R  G  P  F      K C
Sbjct: 53  YVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQR-WGLWPTTFALSSALKAC 111

Query: 90  ASLGLRFLGYEIFGHVLKLGFD---VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           A +  R  G  I G V K GF      +YV  A++  +   GD+ +A  +FDE   RN+V
Sbjct: 112 ARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVV 171

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWNS++ G+++SG    A R+F ++     + D ++   M+S  A+  D+     +   +
Sbjct: 172 SWNSMLAGYLKSGDLVVAQRVFDEIP----QKDVISWNSMISGYARAGDMEKALSLFQQM 227

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            E          NA++  YV+ G ++SA   FD+M     VS  TMI GY+K G +D A 
Sbjct: 228 PERNFASW----NAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSAC 283

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQ 324
           ++FD +  K ++ +NA+I  Y Q  R KEAL LF+ M      ++PD +T    +SACSQ
Sbjct: 284 ELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQ 343

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           LG L  G WI  ++ +    ++  L TAL+D+YAKCG+I KA ++FH + +++ + YTA+
Sbjct: 344 LGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAM 403

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G  ++GKA+DAI  F EM+   + P+ ITF+G+L+A  H GLV+EG + F  M   + 
Sbjct: 404 ILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMKK-YN 462

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           L P + HY  MVDLLGR+G L+EA +LI+SMPM     VWGAL  ACRLH NV  GE AA
Sbjct: 463 LVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAA 522

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
               EL+P  +G   LL+N+Y     W++  ++RK
Sbjct: 523 QHCFELEPDTTGYXSLLSNIYASGERWDDVKRLRK 557



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 189/409 (46%), Gaps = 61/409 (14%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S +L    ++   +   +  SWN  I G+   G M +A+ L++QM         NF   
Sbjct: 182 KSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPER------NF--- 232

Query: 84  LLFKVCASLGLRFLGYEIFGHV--LKLGFDVDMYVHN----AVIHVFVSCGDLGLACNVF 137
                 AS      GY  FG +   +  FD     +N     +I  +  CGD+  AC +F
Sbjct: 233 ------ASWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELF 286

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE--RVEPDEVTMIGMVSACAQLED 195
           D+   ++L+ +N++I  + ++  P+EA++LF +M      V+PDE+T+  ++SAC+QL D
Sbjct: 287 DQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGD 346

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L  G  I  Y+   G+ +   LA AL+D+Y KCG ++ A E+F  +  K +V+ T MI+G
Sbjct: 347 LRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILG 406

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
               G                               ++ +A+ LF EM    I P+ +T 
Sbjct: 407 CGING-------------------------------KAIDAIKLFDEMVDAQIFPNLITF 435

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  L+A +  G +++G      ++K N   +V     +VD+  + G + +AL++   MP 
Sbjct: 436 IGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLLGRAGRLQEALELIKSMPM 495

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIG---VGLMPDEITFLGILS 421
           +    +  + G L L  +  + +  F E+       L PD   +  +LS
Sbjct: 496 Q---PHAGVWGALLLACRLHNNVE-FGEIAAQHCFELEPDTTGYXSLLS 540


>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
          Length = 436

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 175/412 (42%), Positives = 270/412 (65%), Gaps = 3/412 (0%)

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD  +   ++ ACA+L  L+ GREIH    + G+ L V + NAL+  +  CG +E+A  +
Sbjct: 8   PDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAV 67

Query: 238 FDSM--VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           FD +  + + VVS  +MI GY +    ++A K+FD +P +  V W ++I GY Q+   KE
Sbjct: 68  FDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKE 127

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           A+ LF EMQ  G   DA T    LSAC   GAL  G WIH + E+ +  +++    AL+ 
Sbjct: 128 AIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIG 187

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEI 414
           MY+KCG+I KAL++FH + + +  +++A+I GLA++G++  A+  FS+M  +  + P+EI
Sbjct: 188 MYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEI 247

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           TFLG+L AC HGG VD+G  YF  M+ I+ L+P ++HY CMVDLLGR+ LL EAE+ IR+
Sbjct: 248 TFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRT 307

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           +P+  DVV+W +L FACR HGN+ + E AA ++ EL+P+  G  VLL+N+Y  ++ W + 
Sbjct: 308 LPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDV 367

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            +VRK M  + ++K PGCS +E++GL++E  V D+SHPE+  IY+ ++ + +
Sbjct: 368 KRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINK 419



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 159/341 (46%), Gaps = 67/341 (19%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           MLRNG T PDN+++P + K CA L L   G EI    LKLG  +D++V NA+I  F SCG
Sbjct: 1   MLRNG-TLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCG 59

Query: 129 DLGLACNVFD--ESCVRNLVSWNSLINGFVRS--------------------------GF 160
            +  A  VFD   + VR++VSWNS+I+G+++S                          G+
Sbjct: 60  AVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGY 119

Query: 161 P-----REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
                 +EAI LFR+MQ+     D  T+  ++SAC     L  GR IH Y   + + + +
Sbjct: 120 AQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDL 179

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
              NAL+ MY KCG ++ A EIF  +    + S                           
Sbjct: 180 NARNALIGMYSKCGDIQKALEIFHGLTQPDIFS--------------------------- 212

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGI-W 333
               W+A+I G      S +AL LF +M+  + I+P+ +T +  L AC+  G +D G+ +
Sbjct: 213 ----WSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYY 268

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +   +  N    +     +VD+  +   + +A +    +P
Sbjct: 269 FNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLP 309



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 86/168 (51%), Gaps = 2/168 (1%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S   +   K+   + + N+  W   I G+ ++   +EA++L+++M + GG   D  T  
Sbjct: 90  QSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM-QIGGFAADAATIA 148

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +   C   G    G  I  +  +   ++D+   NA+I ++  CGD+  A  +F      
Sbjct: 149 CVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQP 208

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSAC 190
           ++ SW+++I+G   +G   +A+ LF  M++   + P+E+T +G++ AC
Sbjct: 209 DIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 256



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 39/228 (17%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M   G  PD  +    L AC++L  L  G  IH    K   +L+V +  AL+  ++ CG 
Sbjct: 1   MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60

Query: 363 IAK---------------------------------ALQVFHEMPERNSLTYTAIIGGLA 389
           +                                   AL+VF  +P RN++ +T++I G A
Sbjct: 61  VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIFRLSP 447
                 +AI  F EM   G   D  T   +LSAC H G + +GR    + + +SI     
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSI---EM 177

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            L   + ++ +  + G +++A ++   +    D+  W A+     ++G
Sbjct: 178 DLNARNALIGMYSKCGDIQKALEIFHGLTQ-PDIFSWSAVISGLAMNG 224


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/546 (35%), Positives = 303/546 (55%), Gaps = 34/546 (6%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           GF  + L+   A +E  +L+   K+   + + N  SW   I G ++ G   + + L+ +M
Sbjct: 200 GFVMNSLVDMYAKAE--DLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKM 257

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
            R     P  +T   +   C++L     G  + G V+K G   + ++  A++ ++V CG+
Sbjct: 258 -RQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE 316

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           L  A  VFDE    +LV W ++I G+ ++G P +A+RLF D +   + P+ VT   ++SA
Sbjct: 317 LDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSA 376

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            AQL DL+LG+ IH    + GL     + NAL+DMY KC  +  A+ IF  + N      
Sbjct: 377 SAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISN------ 430

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                                    K VV WN++I GY +     +AL LF +M   G  
Sbjct: 431 -------------------------KDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSS 465

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PDA++ V+ LSA   LG L  G  IH +  K  F  N+ + TAL+++Y KCG++  A +V
Sbjct: 466 PDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRV 525

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F EM +RNS+T+ A+IGG  + G +  +I  F EM+  G+ P++I F  ILS C H G+V
Sbjct: 526 FDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMV 585

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
             G++YF  M+  F ++P +KHY+CMVD+L R+G LE+A + I +MPM AD  VWGA   
Sbjct: 586 TAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLH 645

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
            C LH  +   E A  +++ L P+   +YVL++N+Y  + MW+++  +R+ M+E+G+ K 
Sbjct: 646 GCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKL 705

Query: 550 PGCSSI 555
           PGCSS+
Sbjct: 706 PGCSSV 711



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 195/443 (44%), Gaps = 58/443 (13%)

Query: 85  LFKVCASL-GLRFLGYEIFGHV--LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           L   C +L  LR L   +  H   L LG    +     ++  + + GDL  A  VFD + 
Sbjct: 68  LLPSCGTLLSLRVLHARLLTHPQGLLLG---SLRARTKLLSCYAALGDLASARMVFDGTP 124

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP---DEVTMIGMVSACAQLEDLNL 198
             +  S+ +++   V++    +A+ L  DM+  R  P   D+  +   + AC +  + + 
Sbjct: 125 RPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSY 184

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           GR +H    + G      + N+L+DMY K   LE A ++F+ + ++ VVS T+MI G  +
Sbjct: 185 GRSLHCDAIKVGGADGFVM-NSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQ 243

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            GF                               + + L LF++M+   + P   T    
Sbjct: 244 NGF-------------------------------ASDGLLLFNKMRQDNVPPSEYTIATV 272

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           ++ACS L  L  G W+H  + K+    N  +  AL+DMY KCG +  A  VF E+   + 
Sbjct: 273 ITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDL 332

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +T +I G   +G  LDA+  F +     + P+ +T   +LSA      +  G+     
Sbjct: 333 VLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGK----- 387

Query: 439 MSSIFRLSPKLK--HY----SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
             SI  L+ KL    Y    + +VD+  +   + EA+++   +    DVV W ++     
Sbjct: 388 --SIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRIS-NKDVVAWNSMISG-- 442

Query: 493 LHGNVSIGERAAMKLLELDPQDS 515
            +   ++G+ A M   ++  Q S
Sbjct: 443 -YAENNMGDDALMLFKQMSLQGS 464


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 298/506 (58%), Gaps = 4/506 (0%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P   +Y  +F+    L +  LG+++  H+L  G      V + ++  + S GD+  + +V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           F+     + + +NS+I  + R GF    +  +  M       D  T   ++ +  +L  +
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
            +G+ +H  I   GL   + +A +L+ +Y KCG++  A ++FD+M  + V S   ++ GY
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 247

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVT 314
            K G +D A  IF+ +P + +V W  +I GY Q+  +++AL+LF EM  + +G++P+ VT
Sbjct: 248 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 307

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +  L AC+QL  L+ G  IH    +   N N  +  AL  MYAKCG++  A   F ++ 
Sbjct: 308 IMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLN 367

Query: 375 --ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
             E+N + +  +I   A +G  L A+S F EMI  G+ PD+ITF G+LS C H GLVD G
Sbjct: 368 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            KYF  MS+ + ++P+++HY+C+ DLLGR+G L EA +L+  MPM A   +WG+L  ACR
Sbjct: 428 LKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 487

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
            H N+ + E AA KL  L+P+++G YVLL+NMY ++  W+E  K+R +++ +G +K+PGC
Sbjct: 488 KHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGC 547

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIY 578
           S IE+NG  + F+  D SHP+ ++IY
Sbjct: 548 SWIEINGKAHMFLGGDTSHPQGKEIY 573



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 178/410 (43%), Gaps = 70/410 (17%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M + GL       S+++AF A   S ++D    +   +  P+S  +N  IR +   G   
Sbjct: 96  MLLRGLQPTALVGSKMVAFYA--SSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAE 153

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             V  Y  M  + G   D FT+P + K    L   ++G  + G +L++G   D+YV  ++
Sbjct: 154 RTVATYFSM-HSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSL 212

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR----------------------- 157
           I ++  CG++  A  VFD   +R++ SWN+L+ G+ +                       
Sbjct: 213 IILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWT 272

Query: 158 --------SGFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
                   SG  ++A+ LF +M  E   V P+ VT++ ++ ACAQL  L  GR+IH    
Sbjct: 273 TMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELAC 332

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN--KTVVSCTTMIVGYAKFGFLDIA 265
             GL     +  AL  MY KCG L  A   FD +    K +++  TMI  YA +G     
Sbjct: 333 RMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG----- 387

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                        +A++ F EM   GI+PD +T    LS CS  
Sbjct: 388 --------------------------HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 421

Query: 326 GALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
           G +D G+ + +      + N  V     + D+  + G +A+A ++  EMP
Sbjct: 422 GLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMP 471


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 311/568 (54%), Gaps = 44/568 (7%)

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A+ +  + +R  GT  D FT+PL+ + CA +G   LG  I GHVL++GF   ++V N +I
Sbjct: 25  AISVMPRRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELI 84

Query: 122 HVFVSCGDLGLACNVFDESCVR-----------------------------------NLV 146
            ++   G +  A ++FD   VR                                   NLV
Sbjct: 85  GMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLV 144

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +W SLI+ + RSG+  EA+ LF  M+++ VE     +  ++S CA L      + IH Y 
Sbjct: 145 TWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYA 204

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G      + +AL+ +Y K G +  A  +F  M NK++ S   +I  +A+ G  D A 
Sbjct: 205 VKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEAL 264

Query: 267 KIFDDLPEK--------YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
           +IF  L            VV W+AII G+    R KEAL LF  MQ   I  +AVT    
Sbjct: 265 EIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTV 324

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           LS C++L AL  G  IH  + +     N+++G  LV+MYAKCG + +   +F +   ++ 
Sbjct: 325 LSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDL 384

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +++ ++I G  +HG  ++A+  F +MI +G  PD +TF+ +LS+C H GLV EGR+ F Q
Sbjct: 385 ISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQ 444

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M   +R+ P+++HY+CMVDLLGR+GLL EA +++++MP+A +  VWGAL  +CR+H N  
Sbjct: 445 MLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTE 504

Query: 499 IGERAAMKLLELDPQD-SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
           I E  A  L  L  ++ +G Y+LL+N+Y  S  WE++ +VR   + +G++K PG S I+V
Sbjct: 505 IAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKV 564

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLT 585
              +Y F   +      EQI++ L +LT
Sbjct: 565 EKNVYTFSAGNNMQRGFEQIFEILEELT 592



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 173/392 (44%), Gaps = 73/392 (18%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           PN  +W   I  +  +G   EA++L+  ++R  G         ++  +CA LG       
Sbjct: 141 PNLVTWTSLISSYARSGWHEEAMELFG-LMRMKGVEVSGEALAVVISICADLGAFVRAKI 199

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF----------------------- 137
           I  + +K GF+   +V +A+I V+   GD+  A N+F                       
Sbjct: 200 IHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGL 259

Query: 138 -DES------------CVR---NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            DE+            C R   N+VSW+++I+GF   G  +EA+ LFR MQ  ++  + V
Sbjct: 260 CDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAV 319

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+  ++S CA+L  L+LGREIH ++  + +   + + N L++MY KCG L+    IF+  
Sbjct: 320 TISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKT 379

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K ++S  +MI GY   G                                   AL  F 
Sbjct: 380 ERKDLISWNSMITGYGMHGL-------------------------------GMNALETFD 408

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKC 360
           +M   G KPD VT V  LS+CS  G + +G  +  + ++K      +     +VD+  + 
Sbjct: 409 QMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRA 468

Query: 361 GNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           G + +A ++   MP   N+  + A++    +H
Sbjct: 469 GLLREASEIVKNMPVAPNACVWGALLNSCRMH 500


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/389 (43%), Positives = 251/389 (64%), Gaps = 1/389 (0%)

Query: 198 LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           LG ++H  +  +G   +   ++ +L+ +Y  C  +  A  +F  M  + VV+   MI GY
Sbjct: 96  LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGY 155

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
            K G L  AR++FD +PE+ VV W  +IGGY Q +R +EA+ +F  MQ  GI+PD V  +
Sbjct: 156 VKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALL 215

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             LSAC  LGA+D G W+HRF+ +      + L  +++DMY KCG I KA++VF  M E+
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEK 275

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + +T+T +I G ALHG  L A+  F  M    + P+++TFL ILSAC H GL D GR YF
Sbjct: 276 SVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYF 335

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             M S +R+ P+++HY CMVDLLGR+G L+EA+ L++ MP+ A+  +WGAL  A R HG+
Sbjct: 336 NIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGD 395

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
             +GE A + L+EL+P +SG Y+LL+N++ +   W++  K+RK M+ERG+   PG SSIE
Sbjct: 396 ADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSIE 455

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           V+G+++EF  RD SHP L +I + L ++ 
Sbjct: 456 VDGMVHEFTSRDGSHPFLHKICEVLCEIN 484



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 33/284 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +I  +V  GDL  A  +FD    RN+VSW ++I G+ +   P EA+ +FR MQ
Sbjct: 144 DVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQ 203

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E +EPD V ++ ++SAC  L  ++LG  +H ++   GL   +PL N+++DMY+KCG +E
Sbjct: 204 VEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIE 263

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A E+F+ M  K+VV+ TT+I G+A  G                                
Sbjct: 264 KAVEVFEGMEEKSVVTWTTLIAGFALHGL------------------------------- 292

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW-IHRFIEKENFNLNVVLGT 351
             +A+ +F  M+   + P+ VT +  LSACS +G  D G W  +  + +      V    
Sbjct: 293 GLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYG 352

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
            +VD+  + G + +A  +  +MP + N+  + A++     HG A
Sbjct: 353 CMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDA 396



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ++ +L +  ++   +   N  SW   I G+ +  +  EAV+++++M +  G  PD     
Sbjct: 157 KAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRM-QVEGIEPDGVALL 215

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +   C  LG   LG  +   V++ G   ++ + N++I +++ CG +  A  VF+    +
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEK 275

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           ++V+W +LI GF   G   +A+ +FR M+ E + P++VT + ++SAC+ +   +LGR   
Sbjct: 276 SVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGR--- 332

Query: 204 WY----ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           WY    +S+  +   V     ++D+  + G L+ A+++   M  K 
Sbjct: 333 WYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKA 378


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/492 (39%), Positives = 295/492 (59%), Gaps = 6/492 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFV--SCGDLGLACNVFDESCVRNLVSWNSLINGF-V 156
           +   H++  G  +     N ++ V +  S G L  A  +FD+    ++  +N++I    V
Sbjct: 33  QTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAV 92

Query: 157 RSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
                  ++R+F  M ++    P+  T + +  AC     +  G +I  +  + GL   +
Sbjct: 93  IPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNL 152

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
            + NA++ MY   G ++ A  +FD  +++ + S   MI GY   G +  A+++FD++ E+
Sbjct: 153 FVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSER 212

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            VV W  II GYVQ    KEAL LFHEM  TG  P+  T    L+AC+ L ALD G WIH
Sbjct: 213 DVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIH 272

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGK 393
            +I+K    +N  L  +L+DMYAKCG I  A +VFH+    +     + A+IGG A+HGK
Sbjct: 273 VYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 332

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           + +AI  F +M    + P+++TF+ +L+AC HG LV+EGR YF  M+S + + P+++HY 
Sbjct: 333 SKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYG 392

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CMVDLLGRSGLL+EAE+ + +MPMA D  +WGAL  ACR+H ++  G+R    + ELD  
Sbjct: 393 CMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSD 452

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
             G +VLLAN+Y  S  W+EA  VR+ +E  G +KTPGCSSIE+NG+ ++F+V D+SHP+
Sbjct: 453 HIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQ 512

Query: 574 LEQIYDCLVQLT 585
            +Q+Y  L ++T
Sbjct: 513 TKQLYLFLDEMT 524



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 199/426 (46%), Gaps = 65/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGF-LETGKM 59
           +  TGLI H    ++L+     S   +L Y  ++   +  P+ F +N  I+   +     
Sbjct: 38  LITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSS 97

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL-GYEIFGHVLKLGFDVDMYVHN 118
             ++ ++  M+R  G  P+ +T+  +FK C + GL  L G +I  H +K+G + +++V N
Sbjct: 98  HNSMRIFLSMVRVSGFLPNRYTFVFVFKACGN-GLGVLEGEQIRVHAIKIGLESNLFVTN 156

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--------FP--------- 161
           A+I ++ + G +  A  VFD S  ++L SWN +I G+V SG        F          
Sbjct: 157 AMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVS 216

Query: 162 --------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
                         +EA+ LF +M      P+E T+   ++ACA L  L+ GR IH YI 
Sbjct: 217 WTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYID 276

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +S + +   L  +L+DMY KCG+++ A ++F                 + ++G       
Sbjct: 277 KSEIKMNERLLASLLDMYAKCGEIDFAAKVF-----------------HDEYGL------ 313

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                 +  V PWNA+IGGY    +SKEA+ LF +M+   + P+ VT V  L+ACS    
Sbjct: 314 ------KLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKL 367

Query: 328 LDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G  +             +     +VD+  + G + +A +    MP   ++  + A++
Sbjct: 368 VEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALL 427

Query: 386 GGLALH 391
           G   +H
Sbjct: 428 GACRIH 433


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/415 (43%), Positives = 263/415 (63%), Gaps = 31/415 (7%)

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           +L+ + PDEVTM+ +V ACAQL +L  G+ +H Y  E GL   + + NA++DMY KC  +
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           ESA+E+F+                                + EK V+ W +++ G  ++ 
Sbjct: 63  ESAQEVFNR-------------------------------IREKDVLSWTSMLSGLAKSG 91

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             +E+LALF +MQ   I+PD +T V  LSAC+Q GALD G +IH  I+K   N ++VL T
Sbjct: 92  YFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLET 151

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALVDMYAKCG+I  ALQVF  M  RN  T+ A+IGGLA+HG   DAIS F +M    LMP
Sbjct: 152 ALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMP 211

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D++TF+ +L AC H GLVDEG   F  M + F++ P+++HY C+VDLL R+  +++A   
Sbjct: 212 DDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAF 271

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           I +MP+ A+ V+W  L  ACR  G+  + E+   +++EL+P   G YV+L+N+Y   + W
Sbjct: 272 IENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQW 331

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           + A K+RK M+ +G+EKTPGCS IE+NG++++F+  D+SH + EQIY  + ++TR
Sbjct: 332 DHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 386



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 164/322 (50%), Gaps = 35/322 (10%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           M +    RPD  T   L   CA LG    G  +  +  +LG D ++ V+NA++ ++  C 
Sbjct: 1   MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCD 60

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           D+  A  VF+    ++++SW S+++G  +SG+ +E++ LFR MQL ++EPDE+T++G++S
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           ACAQ   L+ G+ IH  I +  +   + L  AL+DMY KCG ++ A ++F  M  + V +
Sbjct: 121 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 180

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              MI G A  G                                 ++A++LF +M+   +
Sbjct: 181 WNAMIGGLAMHG-------------------------------HGEDAISLFDQMEXDKL 209

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKA 366
            PD VT +  L ACS  G +D+G+ + + + K  F +   +     +VD+  +   +  A
Sbjct: 210 MPDDVTFIALLCACSHAGLVDEGLAMFQAM-KNKFQIEPRMEHYGCVVDLLCRARKVDDA 268

Query: 367 LQVFHEMP-ERNSLTYTAIIGG 387
           L     MP + NS+ +  ++G 
Sbjct: 269 LAFIENMPIKANSVLWATLLGA 290


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/550 (34%), Positives = 304/550 (55%), Gaps = 33/550 (6%)

Query: 34  ILFNVQN-PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++FN  +  N   WN+ +  F +   + ++ +L+ QM +  G RP+ FTYP + + C   
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM-QAAGIRPNQFTYPCILRTCTCT 358

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               LG +I    +K GF+ DMYV   +I ++   G L  A  V +    +++VSW S+I
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+V+    ++A+  F++MQ   + PD + +   +S CA +  +  G +IH  I  SG +
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS 478

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V + NAL+++Y +CG++    E F S                            F+++
Sbjct: 479 GDVSIWNALVNLYARCGRIR---EAFSS----------------------------FEEM 507

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K  +  N ++ G+ Q+   +EAL +F  M  +G+K +  T V  LSA + L  +  G 
Sbjct: 508 ELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGK 567

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  + K   +    +G AL+ +Y KCG+   A   F EM ERN +++  II   + HG
Sbjct: 568 QIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           + L+A+  F +M   G+ P+++TF+G+L+AC H GLV+EG  YF  MS  + + P+  HY
Sbjct: 628 RGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHY 687

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +C++D+ GR+G L+ A++ I  MP+AAD +VW  L  AC++H N+ +GE AA  LLEL+P
Sbjct: 688 ACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEP 747

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
            DS  YVLL+N Y  +  W    +VRKMM +RGV K PG S IEV  +++ F V D+ HP
Sbjct: 748 HDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHP 807

Query: 573 ELEQIYDCLV 582
             EQIY+ L 
Sbjct: 808 LAEQIYNFLA 817



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 214/436 (49%), Gaps = 33/436 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   ++ SW   + G+ + G   EA+ LY+QM R  G  P  +    +   C   
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHR-AGVVPTPYVLSSVLSSCTKA 156

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L   G  I     K GF  +++V NAVI +++ CG   LA  VF +   R+ V++N+LI
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLI 216

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G  + G    A+ +F +MQ   + PD VT+  +++ACA L DL  G ++H Y+ ++G++
Sbjct: 217 SGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS 276

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  +L+D+YVKCG +E+A  IF+S     VV    M+V + +    D+A+      
Sbjct: 277 SDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN--DLAK------ 328

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                  +  LF +MQA GI+P+  T    L  C+    +D G 
Sbjct: 329 -----------------------SFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH    K  F  ++ +   L+DMY+K G + KA +V   + E++ +++T++I G   H 
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              DA++ F EM   G+ PD I     +S C     + +G +  A++  +   S  +  +
Sbjct: 426 CCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI-YVSGYSGDVSIW 484

Query: 453 SCMVDLLGRSGLLEEA 468
           + +V+L  R G + EA
Sbjct: 485 NALVNLYARCGRIREA 500



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 200/438 (45%), Gaps = 37/438 (8%)

Query: 52  GFLETGKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRF-LGYEIFGHVLKLG 109
           GFL      + + L+    R +GG  P +F   L  + C   G R+ +  EI    +  G
Sbjct: 15  GFLAHEDPAKVLSLFADKARQHGGLGPLDFACAL--RACRGNGRRWQVVPEIHAKAVTRG 72

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
                 V N +I ++   G +  A  VF+E   R+ VSW ++++G+ ++G   EA+ L+R
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            M    V P    +  ++S+C + E    GR IH    + G    + + NA++ +Y++CG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
               AE +F  M ++  V+  T+I G+A+ G                             
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCG----------------------------- 223

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
               + AL +F EMQ +G+ PD VT    L+AC+ LG L  G  +H ++ K   + + ++
Sbjct: 224 --HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             +L+D+Y KCG++  AL +F+     N + +  ++           +   F +M   G+
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            P++ T+  IL  C     +D G +  + +S        +     ++D+  + G LE+A 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 470 QLIRSMPMAADVVVWGAL 487
           +++  M    DVV W ++
Sbjct: 401 RVL-EMLKEKDVVSWTSM 417



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 175/366 (47%), Gaps = 34/366 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   ++L  ++  +  SW   I G+++    ++A+  +K+M +  G  PDN        
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCGIWPDNIGLASAIS 454

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G +I   +   G+  D+ + NA+++++  CG +  A + F+E  +++ ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGIT 514

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
            N L++GF +SG   EA+++F  M    V+ +  T +  +SA A L ++  G++IH  + 
Sbjct: 515 GNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ++G +    + NAL+ +Y KCG  E A+  F  M  +  VS                   
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS------------------- 615

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WN II    Q  R  EAL LF +M+  GIKP+ VT +  L+ACS +G 
Sbjct: 616 ------------WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 328 LDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G+   + +  E            ++D++ + G + +A +   EMP   +++ +  ++
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 386 GGLALH 391
               +H
Sbjct: 724 SACKVH 729



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 6/237 (2%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+K G +  AR++F++L  +  V W A++ GY Q    +EAL L+ +M   G+ P     
Sbjct: 87  YSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVL 146

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              LS+C++      G  IH    K  F   + +G A++ +Y +CG+   A +VF +MP 
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+++T+  +I G A  G    A+  F EM   GL PD +T   +L+AC   G + +G + 
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 436 FAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
               S +F+  +S        ++DL  + G +E A  +  S     +VV+W  +  A
Sbjct: 267 H---SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR-TNVVLWNLMLVA 319



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 26/188 (13%)

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           ++G  L+D+Y+K G +  A +VF E+  R+++++ A++ G A +G   +A+  + +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--------MVDLL 459
           G++P       +LS+C    L  +GR   AQ           KH  C        ++ L 
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ---------GYKHGFCSEIFVGNAVITLY 188

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLLELDPQD 514
            R G    AE++   MP   D V +  L      H     GE A      M+   L P  
Sbjct: 189 LRCGSFRLAERVFCDMPH-RDTVTFNTLISG---HAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 515 SGIYVLLA 522
             I  LLA
Sbjct: 245 VTISSLLA 252


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/370 (45%), Positives = 249/370 (67%)

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V L N ++  YV  G++  A  +FD M  + +VS  TMI GYA  G +D+AR++F+ + +
Sbjct: 106 VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDD 165

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           +    W++++  Y + +RSK+AL L+ EM+A  + PD  T V  LSACS +GAL  G  +
Sbjct: 166 RDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEV 225

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H+F+E     L+V LGTAL+DMYAKCG+I  +++VFH MP ++ LT++++I GLA HG  
Sbjct: 226 HQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFG 285

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            DA+S FS M+  GL P+E+TF+G+L +C H GLV +G+KYF+ MS +  ++PK++HY C
Sbjct: 286 HDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGC 345

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGRSG +EEA+QLIR MP   D V+W AL  ACR++ NV + E A  KL  LDP  
Sbjct: 346 MVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHA 405

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
            G YVLL+N+Y  +N WE   ++R+ +    +++ PG SSIE    ++EFI  D+SHP  
Sbjct: 406 DGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRS 465

Query: 575 EQIYDCLVQL 584
           ++IY  L ++
Sbjct: 466 KEIYKMLGEM 475



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 150/284 (52%), Gaps = 47/284 (16%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           DM   N +IH +   G++ LA  VF+    R+  SW+S+++ + +    ++A+ L+R+M+
Sbjct: 136 DMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMR 195

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V PD  TM+ ++SAC+ +  L +G E+H ++  +G+ L V L  AL+DMY KCG +E
Sbjct: 196 AACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIE 255

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           ++  +F SM  K V++ ++MI+G A  GF                               
Sbjct: 256 NSVRVFHSMPVKDVLTWSSMIIGLANHGF------------------------------- 284

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             +AL+LF  M + G++P+ VT +  L +C+ LG + DG       +K   +++VV G  
Sbjct: 285 GHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDG-------KKYFSSMSVVHGVT 337

Query: 353 --------LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
                   +VD+  + G+I +A Q+  +MP E +++ + A++G 
Sbjct: 338 PKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 117/215 (54%), Gaps = 2/215 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++   + + ++FSW+  +  + +  + ++A++L+++M R     PD  T   +  
Sbjct: 153 VDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREM-RAACVNPDCTTMVSVLS 211

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ +G   +G E+   V   G ++D+ +  A+I ++  CGD+  +  VF    V+++++
Sbjct: 212 ACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLT 271

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W+S+I G    GF  +A+ LF  M  E ++P+EVT IG++ +C  L  ++ G++    +S
Sbjct: 272 WSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMS 331

Query: 208 -ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              G+T  V     ++D+  + G +E A+++   M
Sbjct: 332 VVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM 366


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 304/552 (55%), Gaps = 58/552 (10%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  S+ +  C  +   N  Y T +   V +P++  WN  I+G+ E   +   V 
Sbjct: 52  GLHQDHFLISQFLTLC--NSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVS 109

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M R+    PD FTYP L K C+ +     G    G  ++ G   D++V  ++I ++
Sbjct: 110 LFIRMKRSDAV-PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLY 168

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             CG++  A  VFDE   RN+VSW ++I G+       EA +LF +M      P++    
Sbjct: 169 GKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM------PEK---- 218

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
                            + W              NA++  YVKCG L SA ++FD M ++
Sbjct: 219 ---------------NAVSW--------------NAIISGYVKCGDLRSARKMFDEMPHR 249

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VVS TTMI GYAK G +  AR +F++ PE+ VV W+A+I               F    
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALI---------------FRVCA 294

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAKCGNI 363
              +KPD    V  +SACSQ+G+L+   W+  ++ K + +++   +  AL+DM AKCG++
Sbjct: 295 EWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSM 354

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A ++F EMP+R+ ++Y +++ GL++HG    A+S FS M+  GL PD++ F  IL+AC
Sbjct: 355 DRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTAC 414

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
              GLVDEG  YF  M + + + P   HY+CMVDLLGR+G L+EA +L++SMP+      
Sbjct: 415 SRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGA 474

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL  AC+LH ++ +GE  A +L EL+PQ++G YVLL+N+Y  +  W +   +R  M E
Sbjct: 475 WGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRE 534

Query: 544 RGVEKTPGCSSI 555
           RG+ K PGCS I
Sbjct: 535 RGIRKIPGCSWI 546


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 174/370 (47%), Positives = 248/370 (67%)

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V L N ++  YV  G++  A ++FD M  + +VS  TMI GYA  G + +AR+IFD   +
Sbjct: 116 VFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRD 175

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           +    W+++I  Y + + SKEAL L+ EM+  G+ PD ++ V  LSACS +GAL  G  +
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           HRF+E     +++ LGTALVDMYAKCG+I  +L+VFH MP ++ LT++++I GLA HG  
Sbjct: 236 HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLG 295

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            DA+S FSEMI  GL P+EITF+G+L AC H GLV++G+KYF+ MS +  + P+++HY C
Sbjct: 296 HDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGC 355

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGR+G +EEA +LIRSM    D ++W  L  ACR+H NV I E A  KL  LDP  
Sbjct: 356 MVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLA 415

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
            G YVLL+N+Y  +N WE   ++RK +    +++ PG SSIE    ++EF+  D+SHP +
Sbjct: 416 DGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRI 475

Query: 575 EQIYDCLVQL 584
           E+IY  L ++
Sbjct: 476 EEIYKMLEEM 485



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 153/288 (53%), Gaps = 47/288 (16%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +IH +   GD+G+A  +FD +  R+  SW+S+I+ + +    +EA+ L+R+M+
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +  V PD ++M+ ++SAC+ +  L +G E+H ++  + + + + L  AL+DMY KCG +E
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIE 265

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           ++ ++F +M  K V++ ++MI+G A  G                                
Sbjct: 266 NSLKVFHAMPVKDVLTWSSMIIGLANHGL------------------------------- 294

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             +AL+LF EM + G++P+ +T +  L AC+ +G ++DG       +K   +++ V G  
Sbjct: 295 GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDG-------KKYFSSMSDVHGVV 347

Query: 353 --------LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
                   +VD+  + G++ +A+++   M  + + + +  ++G   +H
Sbjct: 348 PRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIH 395



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 117/215 (54%), Gaps = 6/215 (2%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +I    ++ ++FSW+  I  + +    +EA++L+++M R  G  PD  +   +   C+++
Sbjct: 168 EIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM-RVAGVAPDCISMVSVLSACSAM 226

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   +G E+   V     +VDM +  A++ ++  CGD+  +  VF    V+++++W+S+I
Sbjct: 227 GALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMI 286

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G    G   +A+ LF +M  + ++P+E+T IG++ AC  +  +N G++  ++ S S + 
Sbjct: 287 IGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKK--YFSSMSDVH 344

Query: 213 LTVPLAN---ALMDMYVKCGKLESAEEIFDSMVNK 244
             VP       ++D+  + G +E A E+  SM  K
Sbjct: 345 GVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFK 379


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 195/485 (40%), Positives = 289/485 (59%), Gaps = 3/485 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVI-HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +I   ++K G   D    + V+     S  D+  A  VF     +N   WN++I GF RS
Sbjct: 43  QIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRS 102

Query: 159 GFPREAIRLFRDM--QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
            FP  AI +F DM      V+P  +T   +  A  +L     GR++H  + + GL     
Sbjct: 103 SFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSF 162

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N ++ MYV CG L  A  IF  M+   VV+  +MI+G+AK G +D A+ +FD++P++ 
Sbjct: 163 IRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRN 222

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V WN++I G+V+  R K+AL +F EMQ   +KPD  T V  L+AC+ LGA + G WIH 
Sbjct: 223 GVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHE 282

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +I +  F LN ++ TAL+DMY KCG I + L VF   P++    + ++I GLA +G    
Sbjct: 283 YIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEER 342

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  FSE+   GL PD ++F+G+L+AC H G V    ++F  M   + + P +KHY+ MV
Sbjct: 343 AMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMV 402

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           ++LG +GLLEEAE LI++MP+  D V+W +L  ACR  GNV + +RAA  L +LDP ++ 
Sbjct: 403 NVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETC 462

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            YVLL+N Y    ++EEA + R +M+ER +EK  GCSSIEV+  ++EFI    +HP+  +
Sbjct: 463 GYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAE 522

Query: 577 IYDCL 581
           IY  L
Sbjct: 523 IYSLL 527



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 199/418 (47%), Gaps = 66/418 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGLIS     SR++AFC  S S +++Y   +   + + N F WN  IRGF  +     A+
Sbjct: 51  TGLISDTVTASRVLAFCCASPS-DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAI 109

Query: 64  DLYKQML-RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            ++  ML  +   +P   TYP +FK    LG    G ++ G V+K G + D ++ N ++H
Sbjct: 110 SIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLH 169

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNS-------------------------------L 151
           ++V+CG L  A  +F      ++V+WNS                               +
Sbjct: 170 MYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSM 229

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I+GFVR+G  ++A+ +FR+MQ + V+PD  TM+ +++ACA L     GR IH YI  +  
Sbjct: 230 ISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRF 289

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            L   +  AL+DMY KCG +E    +F+    K +    +MI+G A  GF          
Sbjct: 290 ELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGF---------- 339

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                                 + A+ LF E++ +G++PD+V+ +  L+AC+  G +   
Sbjct: 340 ---------------------EERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRA 378

Query: 332 IWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
               R + EK     ++   T +V++    G + +A  +   MP E +++ +++++  
Sbjct: 379 DEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSA 436



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 139/277 (50%), Gaps = 7/277 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D    +   +   N  SWN  I GF+  G+ ++A+D++++M +    +PD FT   L  
Sbjct: 208 IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVKPDGFTMVSLLN 266

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA LG    G  I  ++++  F+++  V  A+I ++  CG +    NVF+ +  + L  
Sbjct: 267 ACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSC 326

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS+I G   +GF   A+ LF +++   +EPD V+ IG+++ACA   +++   E    + 
Sbjct: 327 WNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMK 386

Query: 208 ESGLT-LTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIA 265
           E  +   ++     ++++    G LE AE +  +M V +  V  ++++    K G +++A
Sbjct: 387 EKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMA 446

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           ++    L  K + P      GYV    +  +  LF E
Sbjct: 447 KRAAKCL--KKLDPDETC--GYVLLSNAYASYGLFEE 479


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 322/555 (58%), Gaps = 33/555 (5%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           ++++F+ ++  N F WN  +  +       +A+ ++ +++     +PDNFT P + K CA
Sbjct: 160 SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 219

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN-VFDESCVRNLVSWN 149
            L    LG  I G   K+    D++V NA+I ++  CG +  A   VFD    + + SWN
Sbjct: 220 GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWN 279

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           +L+ G+ ++  PR+A+ L+  M    ++PD  T+  ++ AC++++ L+ G EIH +   +
Sbjct: 280 ALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN 339

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL +   +  +L+ +Y+ CGK  +A+ +FD M ++++VS                     
Sbjct: 340 GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS--------------------- 378

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                     WN +I GY Q     EA+ LF +M + GI+P  +  +    ACSQL AL 
Sbjct: 379 ----------WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 428

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  +H F  K +   ++ + ++++DMYAK G I  + ++F  + E++  ++  II G  
Sbjct: 429 LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 488

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
           +HG+  +A+  F +M+ +GL PD+ TF GIL AC H GLV++G +YF QM ++  + PKL
Sbjct: 489 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 548

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           +HY+C+VD+LGR+G +++A +LI  MP   D  +W +L  +CR+HGN+ +GE+ A KLLE
Sbjct: 549 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLE 608

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           L+P+    YVL++N++  S  W++  +VR  M++ G++K  GCS IEV G ++ F++ D+
Sbjct: 609 LEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDE 668

Query: 570 SHPELEQIYDCLVQL 584
             PELE++ +   +L
Sbjct: 669 MLPELEEVRETWRRL 683



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 201/397 (50%), Gaps = 43/397 (10%)

Query: 2   TITGLISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNSFS-WNVAIRGFLETG 57
           T   L+S  F  + LIA    C + E        K +F++ +  + S WN  + G+ +  
Sbjct: 235 TKMDLVSDVFVGNALIAMYGKCGLVEE-----AVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
             R+A+DLY QM  + G  PD FT   L   C+ +     G EI G  L+ G  VD ++ 
Sbjct: 290 DPRKALDLYLQMT-DSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIG 348

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
            +++ +++ CG    A  +FD    R+LVSWN +I G+ ++G P EAI LFR M  + ++
Sbjct: 349 ISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQ 408

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P E+ ++ +  AC+QL  L LG+E+H +  ++ LT  + ++++++DMY K G +  ++ I
Sbjct: 409 PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRI 468

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD +  K V S                               WN II GY    R KEAL
Sbjct: 469 FDRLREKDVAS-------------------------------WNVIIAGYGIHGRGKEAL 497

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDM 356
            LF +M   G+KPD  T    L ACS  G ++DG+ + ++ +   N    +   T +VDM
Sbjct: 498 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 557

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
             + G I  AL++  EMP + +S  +++++    +HG
Sbjct: 558 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 594



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 237/520 (45%), Gaps = 62/520 (11%)

Query: 11  FAPSRLIAFCAIS-ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQ- 68
           F P   ++  A + ++K+L +      N      FS    I+   E+G ++EA+D  ++ 
Sbjct: 39  FTPIASLSLSAQTRQTKSLSFA-----NSSTNRQFSSLHEIKKLCESGNLKEALDFLQRE 93

Query: 69  ---MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV-LKLGFDVDMYVHNAVIHVF 124
              ++ +   R +     +L + C       +G  +   V     F  D  ++  +I ++
Sbjct: 94  SDDVVLDSAQRSE--AMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMY 151

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTM 183
             CG    +  VFD+   +NL  WN++++ + R+    +A+ +F ++  +   +PD  T+
Sbjct: 152 SMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTL 211

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA-EEIFDSMV 242
             ++ ACA L DL LG+ IH   ++  L   V + NAL+ MY KCG +E A + +FD M 
Sbjct: 212 PCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMD 271

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            KTV S                               WNA++ GY Q    ++AL L+ +
Sbjct: 272 TKTVSS-------------------------------WNALLCGYAQNSDPRKALDLYLQ 300

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M  +G+ PD  T    L ACS++ +L  G  IH F  +    ++  +G +L+ +Y  CG 
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK 360

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
              A  +F  M  R+ +++  +I G + +G   +AI+ F +M+  G+ P EI  + +  A
Sbjct: 361 PFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA 420

Query: 423 CCHGGLVDEGRKY--FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           C     +  G++   FA  +    L+  +   S ++D+  + G +  ++++   +    D
Sbjct: 421 CSQLSALRLGKELHCFALKA---HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL-REKD 476

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLE------LDPQD 514
           V  W  +     +HG      + A++L E      L P D
Sbjct: 477 VASWNVIIAGYGIHGR----GKEALELFEKMLRLGLKPDD 512


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/592 (33%), Positives = 328/592 (55%), Gaps = 8/592 (1%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++ ++   F  S+LI+F   S+S ++     +   +   N FSWN     +       
Sbjct: 29  LVLSSVVPDNFLGSKLISF--YSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHT 86

Query: 61  EAVDLYKQMLRNGGT--RPDNFTYPLLFKVCASL-GLRFLGYEIFGHVLKLGFDVDMYVH 117
           + + L+  ++ +  T  +PD FT     K  ASL     L  E+   +L+ G + D++V 
Sbjct: 87  DLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVV 146

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RV 176
           NA+I  +  C +L LA  +FD    R+ VSWN+++ G+ + G   E   LFR M     V
Sbjct: 147 NALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEV 206

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           +P+ +T + ++ ACAQ  DL  G E+H +++ES + + V L NA++ +Y KCG L+ A E
Sbjct: 207 KPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARE 266

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F+ M  K  ++  +MI GY   GF++ A  +F +     +  WNA+I G VQ  R + A
Sbjct: 267 LFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGA 326

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           + +F  MQ+ G +P+ VT    L   S    L  G  IH +  +  ++ N+ + TA++D 
Sbjct: 327 VDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDS 386

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           YAKCG +  A  VF ++  R+ + +T+II   A+HG A  A+S F EM+  G+ PD++TF
Sbjct: 387 YAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTF 446

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             +L+AC H G +DE  K F  +   + + P ++HY+CMV +L R+G L +A + I  MP
Sbjct: 447 TSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMP 506

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +     VWGAL     + G+V +G+    +L E++P+++G YV++AN+Y  S  W++A  
Sbjct: 507 LEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADT 566

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS--HPELEQIYDCLVQLTR 586
           +R +M+E  ++K PG S IE +G +  F  R  S   PE+  + + L+ L +
Sbjct: 567 IRDLMKEVRLKKIPGNSWIETSGGMQRFCXRHSSVRTPEVYGMLEGLLGLVK 618


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/588 (34%), Positives = 316/588 (53%), Gaps = 44/588 (7%)

Query: 13  PSRLIAFCAISESKNLDYCTK-----ILFN--VQNPNSFSWNVAIRGFLETGKMREAVDL 65
           PS+   FC++S   + +  T+      LFN  V   + FSWN  I     +G   EA+  
Sbjct: 4   PSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRA 63

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           +  M R     P   ++P   K C+SL   F G +        G+  D++V +A+I ++ 
Sbjct: 64  FSSM-RKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYS 122

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD------ 179
           +CG L  A  VFDE   RN+VSW S+I G+  +G   +A+ LF+D+ +E  + D      
Sbjct: 123 TCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLD 182

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            + M+ ++SAC+++    L   IH ++ + G    V + N L+D Y K G+         
Sbjct: 183 SMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGE--------- 233

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                               G + +ARKIFD + +K  V +N+I+  Y Q+  S EA  +
Sbjct: 234 --------------------GGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDV 273

Query: 300 FHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           F  + +   +  + +T    L A S  GAL  G  IH  + +     +V++GT+++DMY 
Sbjct: 274 FRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYC 333

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +  A   F  M  +N  ++TA+I G  +HG A  A+  F  MI  G+ P+ ITF+ 
Sbjct: 334 KCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVS 393

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L+AC H GL D G  +F  M   F + P L+HY CMVDLLGR+G L++A  LI+ M M 
Sbjct: 394 VLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKME 453

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            D ++W +L  ACR+H NV + E +  +L ELDP + G Y+LL+++Y DS  W++  +VR
Sbjct: 454 PDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVR 513

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             M+ RG+ K PG S +E+NG ++ F++ D+ HP+ E+IY+ L +L R
Sbjct: 514 MTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNR 561


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 297/542 (54%), Gaps = 38/542 (7%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+ ++G  +EA+      L NG    D+ T   L   C   G    G  I  +
Sbjct: 218 SWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSY 272

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G + +++V N +I ++   G L     VFD   VR+L+SWNS+I  +  +  P  A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT-VPLANALMD 223
           I LF++M+L R++PD +T+I + S  +QL D+   R +  +    G  L  + + NA+  
Sbjct: 333 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV-- 390

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
                                        +V YAK G +D AR +F+ LP   V+ WN I
Sbjct: 391 -----------------------------VVMYAKLGLVDSARAVFNWLPNTDVISWNTI 421

Query: 284 IGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY Q   + EA+ +++ M+  G I  +  T V  L ACSQ GAL  G+ +H  + K  
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
             L+V + T+L DMY KCG +  AL +F+++P  NS+ +  +I     HG    A+  F 
Sbjct: 482 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 541

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM+  G+ PD ITF+ +LSAC H GLVDEG+  F  M + + ++P LKHY CMVD+ GR+
Sbjct: 542 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G LE A + I+SM +  D  +WGAL  ACR+HGNV +G+ A+  L E++P+  G +VLL+
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           NMY  +  WE   ++R +   +G+ KTPG SS+EV+  +  F   +++HP  E++Y  L 
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721

Query: 583 QL 584
            L
Sbjct: 722 AL 723



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 143/512 (27%), Positives = 254/512 (49%), Gaps = 49/512 (9%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++QN + ++WN+ I G+   G   E +  +   + + G  PD  T+P + K C ++    
Sbjct: 111 HIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---I 167

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G +I    LK GF  D+YV  ++IH++     +G A  +FDE  VR++ SWN++I+G+ 
Sbjct: 168 DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 227

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           +SG  +EA+ L   ++      D VT++ ++SAC +  D N G  IH Y  + GL   + 
Sbjct: 228 QSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELF 283

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           ++N L+D+Y + G+L   +++FD M  + ++S                            
Sbjct: 284 VSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS---------------------------- 315

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              WN+II  Y   ++   A++LF EM+ + I+PD +T +   S  SQLG +     +  
Sbjct: 316 ---WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 372

Query: 337 FIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           F  ++ + L ++ +G A+V MYAK G +  A  VF+ +P  + +++  II G A +G A 
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFAS 432

Query: 396 DAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
           +AI  ++ M   G +  ++ T++ +L AC   G + +G K   ++     L   +   + 
Sbjct: 433 EAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTS 491

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ- 513
           + D+ G+ G LE+A  L   +P   + V W  L      HG+   GE+A M   E+  + 
Sbjct: 492 LADMYGKCGRLEDALSLFYQIPR-VNSVPWNTLIACHGFHGH---GEKAVMLFKEMLDEG 547

Query: 514 ---DSGIYVLLANMYRDSNMWEEAGKVRKMME 542
              D   +V L +    S + +E     +MM+
Sbjct: 548 VKPDHITFVTLLSACSHSGLVDEGQWCFEMMQ 579



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 186/392 (47%), Gaps = 38/392 (9%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S  F  ++LI   A  E   L  C K+   +   +  SWN  I+ +    +   A+ 
Sbjct: 277 GLESELFVSNKLIDLYA--EFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHV 123
           L+++M R    +PD  T   L  + + LG       + G  L+ G F  D+ + NAV+ +
Sbjct: 335 LFQEM-RLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVT 182
           +   G +  A  VF+     +++SWN++I+G+ ++GF  EAI ++  M+ E  +  ++ T
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
            + ++ AC+Q   L  G ++H  + ++GL L V +  +L DMY KCG+LE          
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLED--------- 504

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                                 A  +F  +P    VPWN +I  +      ++A+ LF E
Sbjct: 505 ----------------------ALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCG 361
           M   G+KPD +T V  LSACS  G +D+G W    ++ +     ++     +VDMY + G
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602

Query: 362 NIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            +  AL+    M  + ++  + A++    +HG
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHG 634



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 203/462 (43%), Gaps = 95/462 (20%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEP 178
           +++++   G++ LA + FD    R++ +WN +I+G+ R+G   E IR F    L   + P
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D  T   ++ AC  + D   G +IH    + G    V +A +L+ +Y             
Sbjct: 152 DYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLY------------- 195

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                             +++  +  AR +FD++P + +  WNA+I GY Q+  +KEAL 
Sbjct: 196 ------------------SRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT 237

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           L + ++A     D+VT V  LSAC++ G  + G+ IH +  K      + +   L+D+YA
Sbjct: 238 LSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYA 293

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF-- 416
           + G +    +VF  M  R+ +++ +II    L+ + L AIS F EM    + PD +T   
Sbjct: 294 EFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLIS 353

Query: 417 -------LGILSAC---------------------------CHGGLVDEGRKYFAQMSSI 442
                  LG + AC                              GLVD  R  F  + + 
Sbjct: 354 LASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNT 413

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM----PMAADVVVWGALFFACRLHGNVS 498
             +S     ++ ++    ++G   EA ++   M     +AA+   W ++  AC   G + 
Sbjct: 414 DVIS-----WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALR 468

Query: 499 IGERAAMKLLELDPQDSGIYV------LLANMYRDSNMWEEA 534
            G +   +LL+     +G+Y+       LA+MY      E+A
Sbjct: 469 QGMKLHGRLLK-----NGLYLDVFVVTSLADMYGKCGRLEDA 505


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 305/543 (56%), Gaps = 35/543 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G ++ G   +A+D+  +M R  G + +  T   +  VC  LG       I  +
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEM-RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+K G + D++V NA+I+++   G+L  A   F +  + ++VSWNS+I  + ++  P  A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMD 223
              F  MQL   +PD +T++ + S  AQ  D    R +H +I   G L   V + NA++D
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY                               AK G LD A K+F+ +  K V+ WN +
Sbjct: 462 MY-------------------------------AKLGLLDSAHKVFEIILVKDVISWNTL 490

Query: 284 IGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY Q   + EA+ ++  M+    I P+  T V  L A + +GAL  G+ IH  + K N
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTN 550

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            +L+V + T L+D+Y KCG +  A+ +F+++P+ +S+T+ AII    +HG A   +  F 
Sbjct: 551 LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFG 610

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM+  G+ PD +TF+ +LSAC H G V+EG+  F  M   + + P LKHY CMVDLLGR+
Sbjct: 611 EMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRA 669

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G LE A   I+ MP+  D  +WGAL  ACR+HGN+ +G+ A+ +L E+D ++ G YVLL+
Sbjct: 670 GYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 729

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y +   WE   KVR +  ERG++KTPG S+IEVN  +  F   ++SHP+ ++IY+ L 
Sbjct: 730 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 789

Query: 583 QLT 585
            LT
Sbjct: 790 VLT 792



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 153/559 (27%), Positives = 273/559 (48%), Gaps = 46/559 (8%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + G +   F  +RL+   A     +L  CT     +   + ++WN  I  ++  G   
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCT--FDQIPQKDVYTWNSMISAYVHNGHFH 199

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+  + Q+L     RPD +T+P + K C +L     G  I     KLGF  +++V  ++
Sbjct: 200 EAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRRIHCWAFKLGFQWNVFVAASL 256

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH++   G  G+A ++FD+   R++ SWN++I+G +++G   +A+ +  +M+LE ++ + 
Sbjct: 257 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNF 316

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT++ ++  C QL D++    IH Y+ + GL   + ++NAL++MY K G LE A + F  
Sbjct: 317 VTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQ 376

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M    VVS                               WN+II  Y Q      A   F
Sbjct: 377 MFITDVVS-------------------------------WNSIIAAYEQNDDPVTAHGFF 405

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAK 359
            +MQ  G +PD +T V   S  +Q     +   +H FI +  + + +VV+G A+VDMYAK
Sbjct: 406 VKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAK 465

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLG 418
            G +  A +VF  +  ++ +++  +I G A +G A +AI  +  M     ++P++ T++ 
Sbjct: 466 LGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 525

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           IL A  H G + +G +   ++     L   +   +C++D+ G+ G L +A  L   +P  
Sbjct: 526 ILPAYAHVGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  V W A+     +HG+     +   ++L+  + P D   +V L +    S   EE   
Sbjct: 585 SS-VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP-DHVTFVSLLSACSHSGFVEEGKW 642

Query: 537 VRKMMEERGVE---KTPGC 552
             ++M+E G++   K  GC
Sbjct: 643 CFRLMQEYGIKPSLKHYGC 661



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K+   +   +  SWN  I G+ + G   EA+++YK M       P+  T+  +  
Sbjct: 469 LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             A +G    G  I G V+K    +D++V   +I V+  CG L  A ++F +    + V+
Sbjct: 529 AYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+     G   + ++LF +M  E V+PD VT + ++SAC+    +  G+     + 
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           E G+  ++     ++D+  + G LE A      M
Sbjct: 649 EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDM 682


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 304/527 (57%), Gaps = 9/527 (1%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           + F WN  I+        R+A+ L+  ML  G    D F+  L+ K C+ LG    G +I
Sbjct: 85  DPFLWNAVIKSHSHGLDPRKALLLFCLMLETG-VSVDKFSLSLVLKACSRLGFVKEGMQI 143

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G + K G   D+Y+ N +I +++ CG LG A  VFD    R+ VS+NS+I+G+V+ G  
Sbjct: 144 HGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMI 203

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANA 220
             A  LF  M  E+   + ++   M+S  AQ  D +N+ +++   + E  L       N+
Sbjct: 204 ESARGLFDLMPKEK--KNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISW----NS 257

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+D YVK G++E A+ +F+ M  + VV+  TM+ GYAK GF+  A+ +FD +P + VV +
Sbjct: 258 LIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAY 317

Query: 281 NAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           N++I GYVQ +  KEA+ +F++M+  + + PD  T V  LSA +QLG L   + IH +I 
Sbjct: 318 NSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIM 377

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
              F L   LG AL+D Y+KCG+I K+++VF E+  ++   + A+IGGLA+HG    A  
Sbjct: 378 DNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFD 437

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
              ++    + PD+ITF+G+L+AC H GLV EG   F  M    ++ PKL+HY CMVD+L
Sbjct: 438 MLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDIL 497

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
            RSG +E A+ LI  MP+  + V+W     AC  H     GE  A  L      +   +V
Sbjct: 498 SRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFV 557

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           LL+NMY    MW+E  +VR  M+ER + K PGCS IE++G ++EF V
Sbjct: 558 LLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 604


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/653 (33%), Positives = 338/653 (51%), Gaps = 73/653 (11%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
            +TG  S GF  + L+   A  +   LD   ++   +   N  SWN     ++++    E
Sbjct: 109 VVTGFESDGFVANTLVVMYA--KCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGE 166

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           AV L+K+M+R+G   P+ F+  ++   CA L    LG +I G +LK+G D+D +  NA++
Sbjct: 167 AVGLFKEMVRSG-IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALV 225

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++   G++  A  VF +    ++VSWN++I G V       A+ L  +M+     P+  
Sbjct: 226 DMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMF 285

Query: 182 TMIGMVSACAQLEDLNLGREIHWYI----SESGLTLTVPLA------------------- 218
           T+   + ACA +    LGR++H  +    + S L   V L                    
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 219 --------NALMDMYVKCGKLESAEEIFDSMV------NKTVVSC--------------- 249
                   NAL+  Y +CG    A  +F  M       N+T +S                
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCK 405

Query: 250 ------------------TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
                              +++  Y K   +D A KIF++   + +V + ++I  Y Q  
Sbjct: 406 QIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYG 465

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             +EAL L+ +MQ   IKPD       L+AC+ L A + G  +H    K  F  ++    
Sbjct: 466 DGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASN 525

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           +LV+MYAKCG+I  A + F E+P R  ++++A+IGG A HG   +A+  F++M+  G+ P
Sbjct: 526 SLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPP 585

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           + IT + +L AC H GLV+EG++YF +M  +F + P  +HY+CM+DLLGRSG L EA +L
Sbjct: 586 NHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVEL 645

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           + S+P  AD  VWGAL  A R+H N+ +G++AA  L +L+P+ SG +VLLAN+Y  + MW
Sbjct: 646 VNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMW 705

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E   KVRK M++  V+K PG S IE+   +Y FIV D+SH   ++IY  L QL
Sbjct: 706 ENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQL 758



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 196/390 (50%), Gaps = 37/390 (9%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           E+  H++K GF  D  + N ++ ++  C   G A  + DES   ++VSW+SL++G+V++G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           F  EA+ +F +M L  V+ +E T   ++ AC+   DLN+GR++H     +G      +AN
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+ MY KCG L+ +  +F  +V + VVS                               
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVS------------------------------- 150

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA+   YVQ++   EA+ LF EM  +GI P+  +    L+AC+ L   D G  IH  + 
Sbjct: 151 WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLML 210

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K   +L+     ALVDMY+K G I  A+ VF ++   + +++ AII G  LH     A+ 
Sbjct: 211 KMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALM 270

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MVD 457
              EM G G  P+  T    L AC   G  + GR+     SS+ ++      ++   +VD
Sbjct: 271 LLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLH---SSLIKMDAHSDLFAAVGLVD 327

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +  +  ++++A +   SMP   D++ W AL
Sbjct: 328 MYSKCEMMDDARRAYDSMP-KKDIIAWNAL 356



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 251/518 (48%), Gaps = 52/518 (10%)

Query: 6   LISHGFA--PS-RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI  GF+  PS R       S+ +   Y  K++      +  SW+  + G+++ G + EA
Sbjct: 7   LIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEA 66

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           + ++ +M   G  + + FT+P + K C+      +G ++ G  +  GF+ D +V N ++ 
Sbjct: 67  LLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVV 125

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG L  +  +F     RN+VSWN+L + +V+S    EA+ LF++M    + P+E +
Sbjct: 126 MYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFS 185

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           +  +++ACA L++ +LGR+IH  + + GL L    ANAL+DMY K G++E A  +F  + 
Sbjct: 186 ISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA 245

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           +  VVS                               WNAII G V    +  AL L  E
Sbjct: 246 HPDVVS-------------------------------WNAIIAGCVLHDCNDLALMLLDE 274

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+ +G +P+  T    L AC+ +G  + G  +H  + K + + ++     LVDMY+KC  
Sbjct: 275 MKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM 334

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A + +  MP+++ + + A+I G +  G  LDA+S FS+M    +  ++ T   +L +
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS------CMVDLLGRSGLLEEAEQLIRSMP 476
                 +   ++       I  +S K   YS       ++D  G+   ++EA ++     
Sbjct: 395 VASLQAIKVCKQ-------IHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT 447

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
              D+V + ++  A   +G+   GE A    L++   D
Sbjct: 448 W-EDLVAYTSMITAYSQYGD---GEEALKLYLQMQDAD 481



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  + K  F+ +  L   LV +Y+KC     A ++  E  E + +++++++ G   +G 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +A+  F+EM  +G+  +E TF  +L AC     ++ GRK    M+ +          +
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHG-MAVVTGFESDGFVAN 121

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            +V +  + GLL+++ +L   + +  +VV W ALF
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALF 155


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/587 (34%), Positives = 325/587 (55%), Gaps = 44/587 (7%)

Query: 1   MTITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           + ++GL+    A  R +   C+  +S  + +   +   ++ P++F  N  +R ++     
Sbjct: 82  LIVSGLLQQPLAAGRAVKTLCSFPDS--VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDP 139

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+  Y + +      P+++T+PLL KVC  +G    G +I   +LK GF++D++V N+
Sbjct: 140 YTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNS 199

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +IH++  CG +G A  +F+   + +LV+WNS+I+G+V++G    A  LF +M  ER    
Sbjct: 200 LIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMP-ER---- 254

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
                          DL       W              N+++  YV  G + +AE++F+
Sbjct: 255 ---------------DL-----FSW--------------NSMIAGYVGNGDMTAAEDLFN 280

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M  + +VS   MI GYA+   ++IA ++F+ +P + VV WN ++  YV+ K   E L +
Sbjct: 281 KMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRM 340

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYA 358
           F +M    + P+  T V  L+AC+ LG LD G WIH +I+       +V+L TAL+ MYA
Sbjct: 341 FDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYA 399

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +  A  VF +M  R+ +++ ++I G  +HG+A  A+  F +M   G MP++ TF+ 
Sbjct: 400 KCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFIC 459

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC H G++ EG  YF  M   +++ PK++HY CMVDLLGR+GL+++ E+LIR MPM 
Sbjct: 460 VLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPME 519

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
               +WGAL  ACR H N  + E  A +L+EL+P+D G Y+LL+N+Y     W++   VR
Sbjct: 520 GGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVR 579

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           KMM+ERG+ KT G S + +     +  V   S      +Y  L  + 
Sbjct: 580 KMMKERGLTKTTGFSWVHIEEFGTQSFVEKASVHRKSMMYSILSDMA 626


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 188/486 (38%), Positives = 281/486 (57%), Gaps = 13/486 (2%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I+  +++     D +V   ++ V  +   +G A  +F  +   N+  + +LI+G V S +
Sbjct: 51  IYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCY 110

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             + I L+  M    + PD   +  ++ AC     L  GRE+H  + + GL+    +   
Sbjct: 111 YTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIK 170

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+++Y KCG  E A  +FD M  + VV+ T MI  Y   G  D              V W
Sbjct: 171 LIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKD-------------TVCW 217

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A+I G V+   S  AL +F  MQ   + P+ VT V  LSACS+LGAL  G W+  +++K
Sbjct: 218 TAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDK 277

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               LN  +G AL++MY++CG+I +A +VF +M E+N +TY ++I G ALHGK+++A+  
Sbjct: 278 HRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVEL 337

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  +I  G  P  +TF+G+L+AC HGGL + G + F  M+  + + P+++HY CMVDLLG
Sbjct: 338 FRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLG 397

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R G LEEA   IR M +A D V+ GAL  AC++HGN+ + ER A  L+     DSG Y+L
Sbjct: 398 RLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYIL 457

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N Y  S  W+EA +VR  M E G+EK PGCSSIEVN  ++EF++ D  HP+ E+IY  
Sbjct: 458 LSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKK 517

Query: 581 LVQLTR 586
           L +L +
Sbjct: 518 LEELNQ 523



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 182/402 (45%), Gaps = 54/402 (13%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F    L+  C  S   ++ Y +KI  + QNPN + +   I G + +    + + LY QM+
Sbjct: 65  FVVFELLRVC--SNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMI 122

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
            N    PD++    + K C        G E+   VLKLG   +  +   +I ++  CG  
Sbjct: 123 -NSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAF 181

Query: 131 GLACNVFDESCVRNLVS------------------WNSLINGFVRSGFPREAIRLFRDMQ 172
             A  VFDE   R++V+                  W ++I+G VR+G    A+ +FR+MQ
Sbjct: 182 EDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQ 241

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            E V P+EVT++ ++SAC++L  L LGR +  Y+ +  + L   +  AL++MY +CG ++
Sbjct: 242 REDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDID 301

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A+ +F+ M  K V++  +MI+G+A  G                               +
Sbjct: 302 EAQRVFEQMKEKNVITYNSMIMGFALHG-------------------------------K 330

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGT 351
           S EA+ LF  +   G  P +VT V  L+ACS  G  + G  I H   +       +    
Sbjct: 331 SVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYG 390

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            +VD+  + G + +A      M    + +   A++    +HG
Sbjct: 391 CMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHG 432


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/443 (40%), Positives = 275/443 (62%), Gaps = 1/443 (0%)

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           N+ SWNS+I    RSG   EA+R F  M+   ++P+  T    + +C+ L DL+ GR+ H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
                 G    + +++AL+DMY KCG+L  A  +FD + ++ +VS T+MI GY +     
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSAC 322
            A ++FD + E+ V+ WN+II  Y Q   S E++ +FH M   G I  +AVT    L AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +  G+   G  IH  + K     NV +GT+++DMY KCG +  A + F  M E+N  +++
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWS 279

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A++ G  +HG A +A+  F EM   G+ P+ ITF+ +L+AC H GL++EG  +F  MS  
Sbjct: 280 AMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHE 339

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F + P ++HY CMVDLLGR+G L+EA  LI+ M +  D VVWGAL  ACR+H NV +GE 
Sbjct: 340 FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEI 399

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           +A KL ELDP++ G YVLL+N+Y D+  WE+  ++R +M+  G+ K PG S +++ G ++
Sbjct: 400 SARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVH 459

Query: 563 EFIVRDKSHPELEQIYDCLVQLT 585
            F+V D+ HP+ E+IY+ L +L+
Sbjct: 460 VFLVGDREHPQHEKIYEYLEKLS 482



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 178/393 (45%), Gaps = 68/393 (17%)

Query: 35  LFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           LFN  V   N FSWN  I     +G   EA+  +  M R    +P+  T+P   K C++L
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSM-RKLSLKPNRSTFPCAIKSCSAL 89

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G +     L  GF+ D++V +A++ ++  CG+L  A  +FDE   RN+VSW S+I
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 153 NGFVRSGFPREAIRLF-----RD---------------MQLERVE------------PDE 180
            G+V++     A+R+F     RD               M  E +E             + 
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT+  ++ ACA      LG+ IH  + + GL   V +  +++DMY KCGK+E A + FD 
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K V S + M+ GY   G                                +KEAL +F
Sbjct: 270 MREKNVKSWSAMVAGYGMHG-------------------------------HAKEALEVF 298

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAK 359
           +EM   G+KP+ +T V  L+ACS  G L++G  W      + +    V     +VD+  +
Sbjct: 299 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGR 358

Query: 360 CGNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
            G + +A  +   M  R + + + A++G   +H
Sbjct: 359 AGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 320/560 (57%), Gaps = 17/560 (3%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            + LF+ +Q  +  +W V I G+ E GK  E++ L+++M R  G  PD      +   CA
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM-REEGVVPDKVAMVTVVFACA 270

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            LG       I  ++ +  F +D+ +  A+I ++  CG +  A  +FD    +N++SW++
Sbjct: 271 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 330

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I  +   G  R+A+ LFR M    + PD++T+  ++ AC    +L   R++H   S  G
Sbjct: 331 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHG 390

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +   + +AN L+  Y     L+ A  +FD M  +  VS + M+ G+AK G        F 
Sbjct: 391 MLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFR 450

Query: 271 DL------PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           +L      P+ Y +P+            + E+L LF +M+  G+ PD V  V  + AC++
Sbjct: 451 ELIRCGARPDNYTLPF---------CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 501

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           LGA+     I  +I+++ F L+V+LGTA++DM+AKCG +  A ++F  M E+N ++++A+
Sbjct: 502 LGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAM 561

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I     HG+   A+  F  M+  G++P++IT + +L AC H GLV+EG ++F+ M   + 
Sbjct: 562 IAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYS 621

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           +   +KHY+C+VDLLGR+G L+EA +LI SM +  D  +WGA   ACR H +V + E+AA
Sbjct: 622 VRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAA 681

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
             LLEL PQ+ G Y+LL+N+Y ++  WE+  K R +M +R ++K PG + IEV+   ++F
Sbjct: 682 TSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQF 741

Query: 565 IVRDKSHPELEQIYDCLVQL 584
            V D +HP  ++IY+ L  L
Sbjct: 742 SVGDTTHPRSKEIYEMLKSL 761



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 229/525 (43%), Gaps = 89/525 (16%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           ++ G++ +    ++LI F   S  + LD    +   +   +S SW+V + GF + G    
Sbjct: 105 SVHGMLENIVVANKLIYF--YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYIN 162

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
               +++++R G  RPDN+T P + + C  L                       +  A++
Sbjct: 163 CFGTFRELIRCGA-RPDNYTLPFVIRACRDLK---------------------NLQMALV 200

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++V C ++  A  +FD+   R+LV+W  +I G+   G   E++ LF  M+ E V PD+V
Sbjct: 201 DMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKV 260

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            M+ +V ACA+L  ++  R I  YI      L V L  A++DMY KCG +ESA EIFD M
Sbjct: 261 AMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM 320

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K V+S                               W+A+I  Y    + ++AL LF 
Sbjct: 321 EEKNVIS-------------------------------WSAMIAAYGYHGQGRKALDLFR 349

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
            M ++G+ PD +T    L AC     L     +H          N+++   LV  Y+   
Sbjct: 350 MMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYR 409

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-------------- 407
            +  A  +F  M  R+S++++ ++GG A  G  ++    F E+I                
Sbjct: 410 ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGN 469

Query: 408 --------------GLMPDEITFLGILSACCHGGLVDEGRKY--FAQMSSIFRLSPKLKH 451
                         G++PD++  + ++ AC   G + + R    + Q    F+L   L  
Sbjct: 470 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK-FQLDVILG- 527

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            + M+D+  + G +E A ++   M    +V+ W A+  A   HG 
Sbjct: 528 -TAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 570



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 155/317 (48%), Gaps = 54/317 (17%)

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           L+R+ P        +SA     +L   R++H   S  G+   + +AN L+  Y     L+
Sbjct: 76  LQRLNPK-----FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALD 130

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFG-------------------------------- 260
            A  +FD M  +  VS + M+ G+AK G                                
Sbjct: 131 DAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR 190

Query: 261 --------FLDI---------ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                    +D+         AR +FD + E+ +V W  +IGGY +  ++ E+L LF +M
Sbjct: 191 DLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 250

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +  G+ PD V  V  + AC++LGA+     I  +I+++ F L+V+LGTA++DMYAKCG +
Sbjct: 251 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV 310

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             A ++F  M E+N ++++A+I     HG+   A+  F  M+  G++PD+IT   +L AC
Sbjct: 311 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370

Query: 424 CHGGLVDEGRKYFAQMS 440
            +   + + R+  AQ S
Sbjct: 371 INCRNLTQVRQVHAQAS 387


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 210/580 (36%), Positives = 310/580 (53%), Gaps = 41/580 (7%)

Query: 9   HGFAPSRLIAFCAISESKNLDYCTKI--------LFN-VQNPNSFSWNVAIRGFLETGKM 59
           HG A     A+ +I  +  LD   K         +FN + NP   S+N  I G+    + 
Sbjct: 262 HGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQG 321

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +A+D+++ + RN     D  +       C+ +     G ++ G  +K G   ++ V N 
Sbjct: 322 LKALDIFQSLQRNN-LGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANT 380

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ ++  CG L  AC +F+E   R+ VSWN++I    ++    + + LF  M    +EPD
Sbjct: 381 ILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPD 440

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           + T   +V ACA  + LN G EIH  I +SG+ L   + +AL+DMY KCG L  AE    
Sbjct: 441 DFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAE---- 496

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                      KI   L EK  V WN+II G+   K+S+ A   
Sbjct: 497 ---------------------------KIHARLEEKTTVSWNSIISGFSSQKQSENAQRY 529

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M   GI PD  T    L  C+ +  ++ G  IH  I K   + +V + + LVDMY+K
Sbjct: 530 FSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSK 589

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CGN+  +  +F + P+R+ +T++A+I   A HG    AI+ F EM  + + P+   F+ +
Sbjct: 590 CGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISV 649

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H G VD+G  YF +M S + L P+++HYSCMVDLLGRSG + EA +LI SMP  A
Sbjct: 650 LRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEA 709

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D V+W  L   C++ GNV + E+A   LL+LDPQDS  YVLLAN+Y    MW E  K+R 
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRS 769

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
           +M+   ++K PGCS IEV   ++ F+V DK+HP  E+IY+
Sbjct: 770 IMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYE 809



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 246/498 (49%), Gaps = 42/498 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+ K LD   ++   +   N   W+  I G+++  +  E + L+K ML+ G     + TY
Sbjct: 184 SKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS-TY 242

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F+ CA L    LG ++ GH LK  F  D  +  A + ++  C  +  A  VF+    
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPN 302

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
               S+N++I G+ R     +A+ +F+ +Q   +  DE+++ G ++AC+ ++    G ++
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL 362

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    + GL   + +AN ++DMY KCG L  A              C             
Sbjct: 363 HGLAVKCGLGFNICVANTILDMYGKCGALMEA--------------CL------------ 396

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                IF+++  +  V WNAII  + Q +   + L+LF  M  + ++PD  T    + AC
Sbjct: 397 -----IFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKAC 451

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +   AL+ G  IH  I K    L+  +G+ALVDMY KCG + +A ++   + E+ ++++ 
Sbjct: 452 AGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWN 511

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           +II G +   ++ +A  YFS+M+ +G++PD  T+  +L  C +   ++ G++  AQ+  +
Sbjct: 512 SIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKL 571

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
            +L   +   S +VD+  + G ++++  +    P   D V W A+  A   HG   +GE+
Sbjct: 572 -QLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAYHG---LGEK 626

Query: 503 A-----AMKLLELDPQDS 515
           A      M+LL + P  +
Sbjct: 627 AINLFEEMQLLNVKPNHT 644



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 181/378 (47%), Gaps = 33/378 (8%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +I  +   G++G A ++FD    R++VSWNSL++ ++ +G  R++I +F  M+
Sbjct: 71  DVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
             ++  D  T   ++ AC+ +ED  LG ++H    + G    V   +AL+DMY KC KL 
Sbjct: 131 SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKL- 189

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
                                         D A ++F ++PE+ +V W+A+I GYVQ  R
Sbjct: 190 ------------------------------DDAFRVFREMPERNLVCWSAVIAGYVQNDR 219

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             E L LF +M   G+     T      +C+ L A   G  +H    K +F  + ++GTA
Sbjct: 220 FIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTA 279

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            +DMYAKC  +  A +VF+ +P     +Y AII G A   + L A+  F  +    L  D
Sbjct: 280 TLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFD 339

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           EI+  G L+AC       EG +    ++    L   +   + ++D+ G+ G L EA  + 
Sbjct: 340 EISLSGALTACSVIKRHLEGIQLHG-LAVKCGLGFNICVANTILDMYGKCGALMEACLIF 398

Query: 473 RSMPMAADVVVWGALFFA 490
             M    D V W A+  A
Sbjct: 399 EEME-RRDAVSWNAIIAA 415



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 140/244 (57%)

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           ++T   ++  C+ L+ LN G+++H  +  +G   T+ +AN L+  Y K  K+  A ++FD
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M  + V+S  T+I GYA  G +  A+ +FD +PE+ VV WN+++  Y+    +++++ +
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F  M++  I  D  T    L ACS +     G+ +H    +  F  +VV G+ALVDMY+K
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           C  +  A +VF EMPERN + ++A+I G   + + ++ +  F +M+ VG+   + T+  +
Sbjct: 186 CKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 420 LSAC 423
             +C
Sbjct: 246 FRSC 249


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 317/560 (56%), Gaps = 33/560 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++Y  K    V  P+   WN  I+G+ +   +   + +Y  M +     P+ FT+  + 
Sbjct: 49  DVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDM-QISQVHPNCFTFLYVL 107

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C    +  +G +I G   K GF  +++V N+++ ++   G +  A  VFD+   R +V
Sbjct: 108 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW S+I+G+V++G P EA+ +F++M+   V+PD + ++ +++A   +EDL  G+ IH  +
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 227

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           ++ GL     +                            V+S TTM   YAK G +++AR
Sbjct: 228 TKLGLEFEPDI----------------------------VISLTTM---YAKRGLVEVAR 256

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
             F+ + +  ++ WNA+I GY      +EA+ LF EM    I+ D++T    + A +Q+G
Sbjct: 257 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 316

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           +L+   W+  +I K  +  +  + T L+DMYAKCG+I  A  VF  + +++ + ++ +I 
Sbjct: 317 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 376

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G  LHG   +AI  ++EM   G+ P++ TF+G+L+AC + GLV EG + F  M     + 
Sbjct: 377 GYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIE 435

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P  +HYSC+VDLLGR+G L +A   I SMP+   V VWGAL  AC++H  V +GE AA +
Sbjct: 436 PHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQ 495

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L  LDP ++G YV L+N+Y  +++W     VR MM ++G+ K  G SSIE+NG L  F V
Sbjct: 496 LFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQV 555

Query: 567 RDKSHPELEQIYDCLVQLTR 586
            D+SHP+ ++I++ L +L +
Sbjct: 556 GDRSHPKSKEIFEELDRLEK 575


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 185/508 (36%), Positives = 298/508 (58%), Gaps = 34/508 (6%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           DN++        A +    +G ++    +KLG   D +V N +I+++ SC     A +V 
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151

Query: 138 DESC--VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           D +     + VSWN++I G++ +G P +A++ F  M   +V  D+VT++  + ACA+   
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           + +G+  H  +  +G  +   + ++L+ MY KCG++E                       
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVED---------------------- 249

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                    AR+IFD +P++  V W ++I GY Q  +SKEA+ LF +MQ  G+K D  T 
Sbjct: 250 ---------ARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATI 300

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              +S+C Q+GALD G ++H + +      ++ +  +L+DMY+KCG+I KA  +F  M +
Sbjct: 301 STVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVK 360

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRK 434
           R++ ++T II G A +G + +A+  F++M   G +MP+EITFLG+L++C HGGLV++G +
Sbjct: 361 RDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYR 420

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F +MSSI+ ++P+++HY CMVDLLGR+ LL EAEQ I+ MP+A D V+W +L FACR  
Sbjct: 421 HFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTC 480

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           G V + E  A ++  L+P   G  VLL+ +Y  ++ W +A KVR  +      K PGCS 
Sbjct: 481 GEVGLAEYVAERIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSF 540

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           IEV+G ++EF   D+SH E E IY  L+
Sbjct: 541 IEVDGCVHEFFAGDESHFETEAIYSTLL 568



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 166/335 (49%), Gaps = 34/335 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SWN  I G++  G   +A+  + QM + G    D+ T       CA   +  +G   
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAK-GQVMLDDVTLLNALVACARTCMMKVGKLC 218

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              ++  GF+++ Y+ +++I ++  CG +  A  +FD    RN V W S+I+G+ + G  
Sbjct: 219 HALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQS 278

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EAI+LFRDMQ+  V+ D+ T+  +VS+C Q+  L+LGR +H Y    GL   + + N+L
Sbjct: 279 KEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSL 338

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG ++ A +IF  MV +   S T +I+G+A  G                     
Sbjct: 339 IDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGL-------------------- 378

Query: 282 AIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIE 339
                      S EAL LF +M+   G+ P+ +T +  L++CS  G ++ G    HR   
Sbjct: 379 -----------SGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSS 427

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
                  +     +VD+  +   +A+A Q   EMP
Sbjct: 428 IYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMP 462


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 182/493 (36%), Positives = 291/493 (59%), Gaps = 5/493 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H++K       ++   ++ V     +   A  +F      N   +N++I  +  + 
Sbjct: 32  KIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNK 91

Query: 160 FPREAIRLFRDM-----QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
               AI +++ M         + PD+ T   +V +CA L   +LG+++H ++ + G    
Sbjct: 92  VYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN 151

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + N+L++MYVKC  L+ A ++F+ M  +  VS  T+I G+ + G +  AR IF+++ +
Sbjct: 152 TVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQD 211

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +  W AI+ GY +     +AL  F  MQ  GI+PD ++ V  L AC+QLGAL+ G WI
Sbjct: 212 KTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWI 271

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H + +K  F  N+ +  AL++MYAKCG+I +  ++F +M ER+ ++++ +I GLA HG+A
Sbjct: 272 HFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRA 331

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +AI  F EM    + P+ ITF+G+LSAC H GL++EG +YF  M   + + P ++HY C
Sbjct: 332 HEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGC 391

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           +V+LLG SG L++A +LI+ MPM  D  +WG+L  +CR H N+ I   A   LLEL+P D
Sbjct: 392 LVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPAD 451

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
           +G YVLL+N+Y D   W+   ++RK+M  + ++KTPGCSSIEV+ ++ EF   D S P  
Sbjct: 452 TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFS 511

Query: 575 EQIYDCLVQLTRH 587
           + IY  L  L  H
Sbjct: 512 KAIYRVLKLLVMH 524



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 204/423 (48%), Gaps = 78/423 (18%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
            L    F  ++++  C  +     +Y   +   V +PN+F +N  IR +        A+ 
Sbjct: 41  SLSQSSFLVTKMVDVC--NHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAIT 98

Query: 65  LYKQMLRNGGTR----PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +YKQML +        PD FT+P + K CA L    LG ++ GHV K G   +  V N++
Sbjct: 99  VYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSL 158

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR----------------------- 157
           + ++V C  L  A  VF+E   R+ VSWN+LI+G VR                       
Sbjct: 159 VEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWT 218

Query: 158 ---SGFPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
              SG+ R     +A+  FR MQ+  +EPDE++++ ++ ACAQL  L LG+ IH+Y  ++
Sbjct: 219 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKA 278

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G    + + NAL++MY KCG ++    +FD M  + V+S +TMIVG A  G         
Sbjct: 279 GFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHG--------- 329

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                 R+ EA+ LF EMQ   I+P+ +T V  LSAC+  G L+
Sbjct: 330 ----------------------RAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLN 367

Query: 330 DGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           +G+   R+ E    + N+  G      LV++    G + +AL++  +MP +     +AI 
Sbjct: 368 EGL---RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPD---SAIW 421

Query: 386 GGL 388
           G L
Sbjct: 422 GSL 424


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 189/486 (38%), Positives = 286/486 (58%), Gaps = 4/486 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           E+   V++ G D D  V   +   + + G L  +  +   +     + + S I+     G
Sbjct: 42  ELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRG 101

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
                + L  DM  E + P   T+   + AC     L+LGR +H Y  +  L+    +A 
Sbjct: 102 LHLPGLALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHAYAFKLALSGDSYVAT 158

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+ MY + G   +A  +FD M +  VVS T M+  YA  G LD AR++FD LP K  + 
Sbjct: 159 ALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFIC 218

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WNA+I GY Q  +  EAL LF  M  +  +PD VT V  LSA +QLG ++ G W+H +++
Sbjct: 219 WNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVK 278

Query: 340 KEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
                 LNV + TALVDMY KCG++  A+ VFH +  ++ + + A+I G A+HG +  A+
Sbjct: 279 NSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKAL 338

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             F ++   GL P +ITF+G+L+AC H GLV+EGR +F  M   + + PK++HY CMVDL
Sbjct: 339 EMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDL 398

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGR+GL+EEA  L++S+ +  D V+W +L  ACRLH N+++G+R A  L+     +SG+Y
Sbjct: 399 LGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMY 458

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +LL+N+Y     WEE  +VR MM+  G++K PGCS+IE++  +YEF+  D SHP  ++IY
Sbjct: 459 ILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIY 518

Query: 579 DCLVQL 584
             L ++
Sbjct: 519 AMLDKM 524



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 181/425 (42%), Gaps = 72/425 (16%)

Query: 4   TGLISHGFAPSRLIAFC---AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
             ++  G    R +AF    A + S  LD+   +L   ++P +  +  AI      G   
Sbjct: 45  AAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHL 104

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             + L   ML  G   P   T       C  L L   G  +  +  KL    D YV  A+
Sbjct: 105 PGLALLSDMLSEG-LLPTAHTLSASLPACRGLSL---GRALHAYAFKLALSGDSYVATAL 160

Query: 121 I----------------------HV---------FVSCGDLGLACNVFDESCVRNLVSWN 149
           +                      HV         + + G L  A  +FD    ++ + WN
Sbjct: 161 LSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWN 220

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+G+ + G P EA++LFR M     EPDEVT++ ++SA AQL  +  G+ +H Y+  S
Sbjct: 221 AMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNS 280

Query: 210 G-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             + L V +A AL+DMY KCG LE A  +F  + NK +V    MI GYA  G        
Sbjct: 281 RCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHG-------- 332

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                   S++AL +F +++  G+ P  +T +  L+ACS  G +
Sbjct: 333 -----------------------DSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLV 369

Query: 329 DDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           ++G    + +E E   +  +     +VD+  + G I +A  +   +    +++ + +++ 
Sbjct: 370 EEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLA 429

Query: 387 GLALH 391
              LH
Sbjct: 430 ACRLH 434


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/622 (31%), Positives = 331/622 (53%), Gaps = 72/622 (11%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L   +++   V+   +  WN+ +    ++G    ++ L+K+M+ + G   D++T+  + 
Sbjct: 144 DLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVS 202

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K  +SL     G ++ G++LK GF     V N+++  ++    +  A  VFDE   R+++
Sbjct: 203 KSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVI 262

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWNS+ING+V +G   + + +F  M    +E D  T++ + + CA    ++LGR +H + 
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFG 322

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            ++  +      N L+DMY KCG L+SA+ +F  M  ++VVS T+MI GYA+ G    A 
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382

Query: 267 KIFDDLPEKYVVP--------------------------W-------------NAIIGGY 287
           K+F+++ E+ + P                          W             NA++  Y
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442

Query: 288 VQAKRSKEALALFHEMQATGI--------------------------------KPDAVTT 315
            +    +EA  +F EM+   I                                 PD  T 
Sbjct: 443 AKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTV 502

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              L AC+ L A D G  IH +I +  +  +  +  +LVDMYAKCG +  A  +F ++  
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITS 562

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           ++ +++T +I G  +HG   +AI+ F++M   G+ PDEI+F+ +L AC H GLVDEG ++
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRF 622

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M    ++ P ++HY+C+VD+L R+G L +A + I +MP+  D  +WGAL   CR+H 
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHH 682

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           +V + ER A K+ EL+P+++G YVL+AN+Y ++  WEE  ++RK + +RG+ K PGCS I
Sbjct: 683 DVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWI 742

Query: 556 EVNGLLYEFIVRDKSHPELEQI 577
           E+ G +  F+  D S+PE E+I
Sbjct: 743 EIKGRVNIFVAGDSSNPETEKI 764



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 210/441 (47%), Gaps = 36/441 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           N  +R F E+G ++ AV L   +  +G    D  T   + ++CA       G E+   + 
Sbjct: 65  NTQLRRFCESGNLKNAVKL---LHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIR 121

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
             GF +D  + + +  ++ +CGDL  A  VFD+  +   + WN L+N   +SG    +I 
Sbjct: 122 GNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIG 181

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           LF+ M    VE D  T   +  + + L  +N G ++H YI +SG      + N+L+  Y+
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYL 241

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K  +++SA ++FD M  + V+S                               WN+II G
Sbjct: 242 KNHRVDSARKVFDEMTERDVIS-------------------------------WNSIING 270

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           YV    +++ L++F +M  +GI+ D  T V   + C+    +  G  +H F  K  F+  
Sbjct: 271 YVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRE 330

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
                 L+DMY+KCG++  A  VF EM  R+ ++YT++I G A  G A +A+  F EM  
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            G+ PD  T   +L+ C    L+DEG++    +     +   +   + ++D+  + G + 
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKE-NDMGFDIFVSNALMDMYAKCGSMR 449

Query: 467 EAEQLIRSMPMAADVVVWGAL 487
           EAE +   M +  D++ W  +
Sbjct: 450 EAELVFSEMRV-KDIISWNTV 469



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           ++ V   N  +  + ++   K A+ L H      I P  + +V  L  C+   +L DG  
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSV--LQLCADSKSLKDGKE 115

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +  FI    F L+  LG+ L  MY  CG++ +A +VF ++    +L +  ++  LA  G 
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 394 ALDAISYFSEMIGVGLMPDEITF 416
              +I  F +M+  G+  D  TF
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTF 198


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 178/439 (40%), Positives = 275/439 (62%), Gaps = 2/439 (0%)

Query: 141 CVRNLVS--WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           C++N  +  WN+++  FV       A  L++ M      P+  T   ++ AC  + +L +
Sbjct: 71  CLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQM 130

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G   H  + + G      + N L+ +Y  CG ++ A  +FD  + + VV+ T +I GY  
Sbjct: 131 GLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLN 190

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G + IAR++FD +PEK  V W A+I GYV+    KEAL +F++MQ +G + +  + V  
Sbjct: 191 SGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGA 250

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L+AC+ LGALD G WIH ++++ + +L+ +LGTAL+DMYAKCG I  A  VF EM +R+ 
Sbjct: 251 LTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDV 310

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
             +T +I GLA H K+  AI  F+ M   G++P+E+TF+ +L+AC   G+VDEG + F  
Sbjct: 311 YAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFES 370

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           MS+ + + P+++HY C+VDLLGR+G +EEA+Q++R MP+  D    GAL  ACR+HG+V 
Sbjct: 371 MSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQ 430

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           +GE     L++      G++VLL+NMY  ++ WE+A K+RK ME++ + K PGCSSIEVN
Sbjct: 431 LGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVN 490

Query: 559 GLLYEFIVRDKSHPELEQI 577
           G + EF+  D+S+   E I
Sbjct: 491 GTVCEFVTGDRSYALEEDI 509



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 209/426 (49%), Gaps = 66/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKN-LDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           +T+T  +   +A +++I+  A S +++ L Y  ++   +QN ++F WN  ++ F+E  + 
Sbjct: 34  LTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEA 93

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A  LYK ML +    P+NFT+  + + C  +    +G    G V+K G++   +V N 
Sbjct: 94  VRAFSLYKHMLESN-YLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNG 152

Query: 120 VIHVFVSCGDLGLACNVFDESCVR-------------------------------NLVSW 148
           +IH++ +CG + LA N+FD S  R                               N VSW
Sbjct: 153 LIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSW 212

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
            +LI G+VR GF +EA+ +F DMQ+     +  +++G ++ACA L  L+ GR IH Y+  
Sbjct: 213 GALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKR 272

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             ++L   L  AL+DMY KCG +E A  +FD M ++ V + T +I G A           
Sbjct: 273 HHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANH--------- 323

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  +S+ A+ LF+ MQ  G+ P+ VT V  L+ACS++G +
Sbjct: 324 ----------------------DKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMV 361

Query: 329 DDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           D+G+ I   +         +     LVD+  + G I +A QV  EMP + +S T  A++ 
Sbjct: 362 DEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLD 421

Query: 387 GLALHG 392
              +HG
Sbjct: 422 ACRVHG 427



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 140/350 (40%), Gaps = 48/350 (13%)

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           A ++F  L  K    WN ++  +V+   +  A +L+  M  +   P+  T    + AC  
Sbjct: 65  AERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACID 124

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG--NIAK----------------- 365
           +  L  G+  H  + K  +     +   L+ +YA CG  ++A+                 
Sbjct: 125 VFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCL 184

Query: 366 ------------ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
                       A ++F  MPE+N +++ A+I G    G   +A+  F +M   G   + 
Sbjct: 185 ISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNR 244

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
            + +G L+AC   G +D+GR   A +     +S      + ++D+  + G +E A  +  
Sbjct: 245 ASIVGALTACAFLGALDQGRWIHAYVKR-HHMSLDRMLGTALIDMYAKCGCIEMACSVFD 303

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI------YVLLANMYRD 527
            M    D  V+    F C + G  +  +  A   L    QD G+      +V + N    
Sbjct: 304 EMD---DRDVYA---FTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSR 357

Query: 528 SNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
             M +E  ++ + M  R V +      I+  G L + + R     E +Q+
Sbjct: 358 MGMVDEGLRIFESMSNRYVIE----PQIQHYGCLVDLLGRAGKIEEAKQV 403


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 322/569 (56%), Gaps = 8/569 (1%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++ ++   F  S+LI+F   S+S ++     +   +   N FSWN  +  +       
Sbjct: 29  LVLSSVVPDNFLGSKLISF--YSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHT 86

Query: 61  EAVDLYKQMLRNGGT--RPDNFTYPLLFKVCASL-GLRFLGYEIFGHVLKLGFDVDMYVH 117
           + + L+  ++ +  T  +PD FT     K  ASL     L  E+   +L+ G + D++V 
Sbjct: 87  DLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVV 146

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLER 175
           NA+I  +  C +L LA  +FD    R++VSWN+++ G+ + G   +   LFR M   LE 
Sbjct: 147 NALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLE- 205

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V+P+ +T + ++ ACAQ  DL  G E+H +++ES + + V L NA++ +Y KCG L+ A 
Sbjct: 206 VKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYAR 265

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           E+F+ M+ K  ++  +MI GY   GF++ A  +F +     +  WNA+I G VQ  R + 
Sbjct: 266 ELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEG 325

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           A+ +F  MQ+ G +P+ VT    L   S    L  G  IH +  +  ++ N+ + TA++D
Sbjct: 326 AVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIID 385

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
            YAKCG +  A  VF ++  R+ + +T+II   A+HG A  A+S F EM+  G+ PD++T
Sbjct: 386 SYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVT 445

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F  +L+AC H G +DE  K F  +   + + P ++HY+CMV +L R+G L +A + I  M
Sbjct: 446 FTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKM 505

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P+     VWGAL     + G+V +G+    +L E++P+++G YV++AN+Y  S  W++A 
Sbjct: 506 PLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDAD 565

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            +R +M+E  ++K PG S IE +G +  F
Sbjct: 566 TIRDLMKEVRLKKIPGNSWIETSGGMQRF 594


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 201/579 (34%), Positives = 321/579 (55%), Gaps = 46/579 (7%)

Query: 19  FCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           F   + + N +  T  LFN      + +SWN  I      G   E++  +  M R    +
Sbjct: 23  FSTTAAATNTNLTT--LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWM-RKLDIK 79

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+  T+P   K C++L     G +     L  GF+ D++V +A+I ++  CG L  A  +
Sbjct: 80  PNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVL 139

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP---------DEVTMIGMV 187
           FDE   RN+V+W SLI G+V++    EA+ +F++   E+ E          D V MI ++
Sbjct: 140 FDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVL 199

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SAC+++ +  +   +H    + GL   + + N L+D Y KCG++  + ++FD M  K VV
Sbjct: 200 SACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVV 259

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QAT 306
           S  +MI  YA+ G                                S +A  +FH M +A 
Sbjct: 260 SWNSMIAVYAQNGL-------------------------------STDAFEVFHGMLKAG 288

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G K + VT    L AC+  GAL  G+ +H  + K  +  NV++ T+++DMY KCG    A
Sbjct: 289 GGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMA 348

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
              F  M E+N  ++TA+I G  +HG A +A+  F +MI  G+ P+ ITF+ +L+AC H 
Sbjct: 349 RNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHA 408

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G ++EG ++F  MS  + + P ++HY CMVDLLGR+G ++EA  LI+SM +  D V+WG+
Sbjct: 409 GFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGS 468

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H +V + E +A +L +LDP + G YVLLAN+Y D+  W++  ++R ++++RG+
Sbjct: 469 LLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGL 528

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            K PG S +E+ G ++ F+V DK HP+ E+IY  L +L+
Sbjct: 529 VKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELS 567


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 317/560 (56%), Gaps = 33/560 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++Y  K    V  P+   WN  I+G+ +   +   + +Y  M +     P+ FT+  + 
Sbjct: 34  DVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDM-QISQVHPNCFTFLYVL 92

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C    +  +G +I G   K GF  +++V N+++ ++   G +  A  VFD+   R +V
Sbjct: 93  KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW S+I+G+V++G P EA+ +F++M+   V+PD + ++ +++A   +EDL  G+ IH  +
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 212

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           ++ GL     +                            V+S TTM   YAK G +++AR
Sbjct: 213 TKLGLEFEPDI----------------------------VISLTTM---YAKRGLVEVAR 241

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
             F+ + +  ++ WNA+I GY      +EA+ LF EM    I+ D++T    + A +Q+G
Sbjct: 242 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 301

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           +L+   W+  +I K  +  +  + T L+DMYAKCG+I  A  VF  + +++ + ++ +I 
Sbjct: 302 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 361

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G  LHG   +AI  ++EM   G+ P++ TF+G+L+AC + GLV EG + F  M     + 
Sbjct: 362 GYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIE 420

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P  +HYSC+VDLLGR+G L +A   I SMP+   V VWGAL  AC++H  V +GE AA +
Sbjct: 421 PHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQ 480

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L  LDP ++G YV L+N+Y  +++W     VR MM ++G+ K  G SSIE+NG L  F V
Sbjct: 481 LFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQV 540

Query: 567 RDKSHPELEQIYDCLVQLTR 586
            D+SHP+ ++I++ L +L +
Sbjct: 541 GDRSHPKSKEIFEELDRLEK 560


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 217/634 (34%), Positives = 327/634 (51%), Gaps = 73/634 (11%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           +S  K +D  + +   + NP+ F +NV IR F        AV LY  + ++    PDNFT
Sbjct: 52  LSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFT 111

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           Y     V +      LG  +  H +  GF  D++V +A++  +     +  A  VFD   
Sbjct: 112 YAF---VISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGML 168

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            R+ V WN++++G V++    EAI +F DM    +  D  T+  ++   A+L+DL LG  
Sbjct: 169 ERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMG 228

Query: 202 I-----------HWYI--------SESGLTLTVPLA------------NALMDMYVKCGK 230
           I           H Y+        S+ G   T  L             NA++  Y    +
Sbjct: 229 IQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNE 288

Query: 231 LESAEEIFDSM------VNKTVV---------------------------------SCTT 251
            ES+  +F  +      VN + +                                   T 
Sbjct: 289 TESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTA 348

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           +   Y++   ++ AR +FD+  EK +  WNA+I GY Q   +++A++LF EMQ   ++P+
Sbjct: 349 LTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPN 408

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            VT    LSAC+QLGAL  G W+H  I +E+F  N+ + TAL+DMYAKCG+I +A ++F 
Sbjct: 409 PVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFS 468

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            MPE+N++T+ A+I G  LHG   +A++ F+EM+   + P  +TFL +L AC H GLV E
Sbjct: 469 MMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVRE 528

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G + F  M       P  +HY+CMVDLLGR+G L++A   IR MP+     VWGAL  AC
Sbjct: 529 GDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGAC 588

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
            +H + ++   A+ KL ELDPQ+ G YVLL+N+Y     + EA  VR +++ R + KTPG
Sbjct: 589 MIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPG 648

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           C+ IEV   L+ F   D+SHP+   IY  L +LT
Sbjct: 649 CTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLT 682


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 192/546 (35%), Positives = 300/546 (54%), Gaps = 34/546 (6%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           GF  + L+   A  ++ +L+   K+   +   N  SW   + G ++ G   + + L+ +M
Sbjct: 167 GFVMNSLVDMYA--KAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKM 224

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
            R     P  +T   +   C++L     G  + G V+K G   + ++  A++ ++V CG+
Sbjct: 225 -RQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE 283

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           L  A  VFDE    +LV W ++I G+ ++G P +A+RLF D +   + P+ VT+  ++SA
Sbjct: 284 LEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSA 343

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            AQL DL+LGR IH    + GL     + NAL+DMY KC  +  A               
Sbjct: 344 SAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEAN-------------- 389

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                            +IF  +  K VV WN+++ GY +     +AL LF +M   G  
Sbjct: 390 -----------------RIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPS 432

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PDA++ VH LSA   LG L  G   H +  K  F  N+ + TAL+++Y KCG++  A +V
Sbjct: 433 PDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRV 492

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F EM +RNS+T+ A+IGG  + G +  +I  F EM+  G+ P+++ F  ILS C H G+V
Sbjct: 493 FDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMV 552

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
              ++YF  M+  F ++P +KHY+CMVD+L R+G LEEA + I +MPM AD  VWGA   
Sbjct: 553 TAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLH 612

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
            C LH  +  GE A  +++ L P+   +YVL++N+Y  + MWE++  +R+ M+E+G+ K 
Sbjct: 613 GCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWMQEKGLVKL 672

Query: 550 PGCSSI 555
           PG SSI
Sbjct: 673 PGYSSI 678



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 198/395 (50%), Gaps = 41/395 (10%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-----DNFTYPLLFKVCASLGLR 95
           P+++S+ V +   ++  +  EAV L++ M R    RP     D+F   L  K C      
Sbjct: 93  PDAYSYGVMLWCLVQAERHAEAVALHQDMRRR---RPCPEAQDDFVLSLALKACIRSADY 149

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
             G  +    +K+G   D +V N+++ ++   GDL  A  VF+    RN+VSW S+++G 
Sbjct: 150 GYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGC 208

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
           V++GF  + + LF  M+ + V P E T+  +++AC+ L  L+ GR +H  + + GL    
Sbjct: 209 VQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNS 268

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
            ++ AL+DMYVKCG+LE A+ +FD +    +V  TTMIVGY + G               
Sbjct: 269 FISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNG--------------- 313

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
                              +AL LF + +   I P++VT    LSA +QL  L  G  IH
Sbjct: 314 ----------------NPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIH 357

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
               K       V+  ALVDMYAKC  +++A ++F  +  ++ + + +++ G A +    
Sbjct: 358 GIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCN 417

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSAC-CHGGLV 429
           DA+  F +M   G  PD I+ +  LSA  C G L+
Sbjct: 418 DALMLFKQMSLKGPSPDAISVVHALSASVCLGDLL 452



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 183/416 (43%), Gaps = 55/416 (13%)

Query: 85  LFKVCASL-GLRFLGYEIFGHV--LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           L   C +L  LR L   +  H   L LG    +     ++  + + GDL  A  VFD + 
Sbjct: 35  LLPSCGTLPSLRVLHARLLTHTQGLLLG---SLRARTKLLSCYAALGDLASARMVFDGTP 91

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP---DEVTMIGMVSACAQLEDLNL 198
             +  S+  ++   V++    EA+ L +DM+  R  P   D+  +   + AC +  D   
Sbjct: 92  RPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGY 151

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G  +H    + G      + N+L+DMY K G LE A ++F+ +  + VVS T+M+ G  +
Sbjct: 152 GTRLHCDAVKVGGADGFVM-NSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQ 210

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            GF                               + + L LF++M+   + P   T    
Sbjct: 211 NGF-------------------------------AADGLLLFNKMRQDNVPPSEYTIATV 239

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           ++ACS L  L  G W+H  + K+    N  +  AL+DMY KCG +  A  VF E+   + 
Sbjct: 240 ITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDL 299

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +T +I G   +G  LDA+  F +     ++P+ +T   +LSA      +  GR     
Sbjct: 300 VLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGR----- 354

Query: 439 MSSIFRLSPKLK--HYS----CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
             SI  ++ KL    Y+     +VD+  +   + EA ++  S+    DVV W ++ 
Sbjct: 355 --SIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSIS-NKDVVAWNSML 407



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 136/304 (44%), Gaps = 43/304 (14%)

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKT-------VVSCTTMIVGYAKFGFLDIARKIFD 270
           A  L+ +   CG L S   +   ++  T       + + T ++  YA  G L  AR +FD
Sbjct: 29  AGDLLRLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFD 88

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA---VTTVHCLSACSQLGA 327
             P      +  ++   VQA+R  EA+AL  +M+     P+A         L AC +   
Sbjct: 89  GTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSAD 148

Query: 328 LDDGIWIH----RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
              G  +H    +    + F +N     +LVDMYAK G++  A +VF  +P RN +++T+
Sbjct: 149 YGYGTRLHCDAVKVGGADGFVMN-----SLVDMYAKAGDLECARKVFERIPGRNVVSWTS 203

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-----------HGGLVDEG 432
           ++ G   +G A D +  F++M    + P E T   +++AC            HG ++ +G
Sbjct: 204 MLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQG 263

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
                 MS+ F         + ++D+  + G LE+A+ +   +    D+V+W  +     
Sbjct: 264 -----LMSNSFI-------SAALLDMYVKCGELEDAQCVFDELSY-IDLVLWTTMIVGYT 310

Query: 493 LHGN 496
            +GN
Sbjct: 311 QNGN 314


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 179/437 (40%), Positives = 266/437 (60%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           +NSLI     S  P EA+ L+  M    ++PD +T   ++ AC +      G  +H ++ 
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG      + ++L+ +Y     L +A+++F+    + VVS   MI GY K   +  AR 
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 253

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD +  + V+ WN +I GY    +  EALALF +M+A G+KP   T V  LSAC+ LGA
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           LD G+ +H +I      +N ++GTALVDMYAKCG I+ A QVF+ M  ++ L +  II G
Sbjct: 314 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 373

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           +A+HG   +A   F EM   G+ P++ITF+ ILSAC H G+VDEG+K    MSS + + P
Sbjct: 374 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEP 433

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           K++HY C++DLL R+G LEEA +LI +MPM  +    GAL   CR+HGN  +GE    +L
Sbjct: 434 KVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRL 493

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           + L P  SG Y+LL+N+Y  +  W++A KVR +M+  G+ K PG S IE+ G+++ F+  
Sbjct: 494 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 553

Query: 568 DKSHPELEQIYDCLVQL 584
           D SHPE  +IY+ L ++
Sbjct: 554 DWSHPESNKIYEKLNEI 570



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 197/398 (49%), Gaps = 65/398 (16%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L Y   I  ++QNP    +N  IR    +    EA+ LY  ML++G  +PD+ TYP + K
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSG-LKPDHMTYPFVIK 174

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA------CN------ 135
            C    + + G  +  HV+K GF+ D Y+ +++IH++ +  DLG A      C+      
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 234

Query: 136 -------------------VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                              VFD    R+++SWN++ING+   G P EA+ LF  M+   V
Sbjct: 235 WNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGV 294

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           +P E T++ ++SACA L  L+ G  +H YI+++ + +   +  AL+DMY KCGK+  A +
Sbjct: 295 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 354

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F++M +K V++  T+I G A  G +  A++                             
Sbjct: 355 VFNAMESKDVLAWNTIIAGMAIHGNVKEAQQ----------------------------- 385

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVD 355
             LF EM+  G++P+ +T V  LSACS  G +D+G  +   +         V     ++D
Sbjct: 386 --LFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVID 443

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           + A+ G + +A+++   MP E N     A++GG  +HG
Sbjct: 444 LLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHG 481



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 35/295 (11%)

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
           FL  A+ IF  L       +N++I     +K   EAL L+H M  +G+KPD +T    + 
Sbjct: 115 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 174

Query: 321 ACSQLGALDDGIWIHRFI---------------------------EKENFNL----NVVL 349
           AC++      G+ +H  +                            K+ FNL    +VV 
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 234

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             A++D Y K   +  A  VF  M  R+ +++  +I G A+ GK  +A++ F +M  VG+
Sbjct: 235 WNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGV 294

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            P E T + +LSAC H G +D+G      ++   R+       + +VD+  + G +  A 
Sbjct: 295 KPTEATVVSLLSACAHLGALDKGLHLHTYIND-NRIEVNSIVGTALVDMYAKCGKISLAT 353

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQDSGIYVLLA 522
           Q+  +M  + DV+ W  +     +HGNV   ++    MK   ++P D     +L+
Sbjct: 354 QVFNAME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 407


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 309/584 (52%), Gaps = 49/584 (8%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLE-TGKMREAVDLYKQM 69
           F   +LIA  A S  ++L     +  +V +PN   +N  IR     T       + + QM
Sbjct: 54  FVAPKLIA--AFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQM 111

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
            +NG   PDNFTYP L K C       L   I  HV K GF  D++V N++I  +  CG 
Sbjct: 112 QKNG-LFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGS 170

Query: 130 LGL--ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
            GL  A ++F     R++V+WNS+I G VR G    A +LF          DE+    MV
Sbjct: 171 AGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLF----------DEMPERDMV 220

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           S               W              N ++D Y K G+++ A E+F+ M  + +V
Sbjct: 221 S---------------W--------------NTMLDGYAKAGEMDRAFELFERMPQRNIV 251

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S +TM+ GY+K G +D+AR +FD  P K VV W  II GY +    +EA  L+ +M+  G
Sbjct: 252 SWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAG 311

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++PD    +  L+AC++ G L  G  IH  + +  F     +  A +DMYAKCG +  A 
Sbjct: 312 LRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAF 371

Query: 368 QVFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            VF  M  +++ +++ ++I G A+HG    A+  FS M+  G  PD  TF+G+L AC H 
Sbjct: 372 DVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHA 431

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV+EGRKYF  M  ++ + P+++HY CM+DLLGR G L+EA  L+RSMPM  + ++ G 
Sbjct: 432 GLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGT 491

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H +V        +L +++P D G Y LL+N+Y  +  W     VR  M   G 
Sbjct: 492 LLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGG 551

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY---DCLVQLTRH 587
           +K  G SSIEV   ++EF V D+SHP+ + IY   D LVQ  R 
Sbjct: 552 QKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQ 595



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 17/234 (7%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  CS L +++    IH  + K N + ++ +   L+  ++ C ++A A+ VF+ +P  N 
Sbjct: 28  LHKCSNLDSVNQ---IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84

Query: 379 LTYTAIIGGLALHGKALDAISY--FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
             Y +II   A H  +  ++ +  F +M   GL PD  T+  +L AC     +   R   
Sbjct: 85  HLYNSIIRAHA-HNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIH 143

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGL--LEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           A +   F     +   + ++D   R G   L+ A  L  +M    DVV W ++     + 
Sbjct: 144 AHVEK-FGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMK-ERDVVTWNSM-----IG 196

Query: 495 GNVSIGE-RAAMKLL-ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           G V  GE   A KL  E+  +D   +  + + Y  +   + A ++ + M +R +
Sbjct: 197 GLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNI 250


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 291/501 (58%), Gaps = 7/501 (1%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L   CA+L  R  G E+    ++ G D D  V   +   + +   L L   +   +    
Sbjct: 41  LLTGCATL--RRTG-ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPT 97

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
            V + S I+     G    A+ L  +M    + P   T+   + AC     L LGR +H 
Sbjct: 98  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHA 154

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           Y  +  L     +A AL+ MY + G  ++A  +FD M +  VV  T M+  YAK G LD 
Sbjct: 155 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 214

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR++FD +P K  + WNA+I GY Q  R  EAL LF  M  +G+ PD V  +  LSA +Q
Sbjct: 215 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 274

Query: 325 LGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           LG  + G W+H +++      LN  +GTAL+DMY KCG++  A+ VF+ + +++ + + A
Sbjct: 275 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 334

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A+HG +  A+  FS++   GL P +ITF+G+L+AC H GLVDEG ++F  M   +
Sbjct: 335 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 394

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + PK++HY CMVDLLGR+GL+EEA  L++SM +A D V+W +L  ACRLH N+++G++ 
Sbjct: 395 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 454

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A  L+     +SG+Y+LL+N+Y     WEE  +VR MM+  G++K PGCS+IEV   +YE
Sbjct: 455 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 514

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F+  D SHP  ++IY  L ++
Sbjct: 515 FVAGDMSHPRTDEIYAMLEKM 535



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 175/408 (42%), Gaps = 75/408 (18%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A + S  LD    +L    +P +  +  AI      G    A+ L  +ML  G   P + 
Sbjct: 76  AYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRG-LIPTSH 134

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE- 139
           T       C  L L   G  +  +  KL    D YV  A++ ++   GD   A  +FDE 
Sbjct: 135 TLSSSLPACHGLAL---GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEM 191

Query: 140 ------------SCV------------------RNLVSWNSLINGFVRSGFPREAIRLFR 169
                       +C                   ++ + WN++I+G+ + G P EA+RLFR
Sbjct: 192 PDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR 251

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKC 228
            M    V+PDEV +I  +SA AQL     GR +H Y+  S  + L   +  AL+DMY KC
Sbjct: 252 WMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKC 311

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G LE A  +F+S+ +K +V    MI GYA  G                            
Sbjct: 312 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG---------------------------- 343

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
               S++AL +F ++++ G+ P  +T +  L+ACS  G +D+G   H+F +       +V
Sbjct: 344 ---DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEG---HQFFQSMEEEYAIV 397

Query: 349 LGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
                   +VD+  + G I +A  +   M    +++ + +++    LH
Sbjct: 398 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 445


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 291/501 (58%), Gaps = 7/501 (1%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L   CA+L  R  G E+    ++ G D D  V   +   + +   L L   +   +    
Sbjct: 40  LLTGCATL--RRTG-ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPT 96

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
            V + S I+     G    A+ L  +M    + P   T+   + AC     L LGR +H 
Sbjct: 97  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHA 153

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           Y  +  L     +A AL+ MY + G  ++A  +FD M +  VV  T M+  YAK G LD 
Sbjct: 154 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 213

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR++FD +P K  + WNA+I GY Q  R  EAL LF  M  +G+ PD V  +  LSA +Q
Sbjct: 214 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 273

Query: 325 LGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           LG  + G W+H +++      LN  +GTAL+DMY KCG++  A+ VF+ + +++ + + A
Sbjct: 274 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 333

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A+HG +  A+  FS++   GL P +ITF+G+L+AC H GLVDEG ++F  M   +
Sbjct: 334 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 393

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + PK++HY CMVDLLGR+GL+EEA  L++SM +A D V+W +L  ACRLH N+++G++ 
Sbjct: 394 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 453

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A  L+     +SG+Y+LL+N+Y     WEE  +VR MM+  G++K PGCS+IEV   +YE
Sbjct: 454 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 513

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F+  D SHP  ++IY  L ++
Sbjct: 514 FVAGDMSHPRTDEIYAMLEKM 534



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 175/408 (42%), Gaps = 75/408 (18%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A + S  LD    +L    +P +  +  AI      G    A+ L  +ML  G   P + 
Sbjct: 75  AYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRG-LIPTSH 133

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE- 139
           T       C  L L   G  +  +  KL    D YV  A++ ++   GD   A  +FDE 
Sbjct: 134 TLSSSLPACHGLAL---GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEM 190

Query: 140 ------------SCV------------------RNLVSWNSLINGFVRSGFPREAIRLFR 169
                       +C                   ++ + WN++I+G+ + G P EA+RLFR
Sbjct: 191 PDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR 250

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKC 228
            M    V+PDEV +I  +SA AQL     GR +H Y+  S  + L   +  AL+DMY KC
Sbjct: 251 WMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKC 310

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G LE A  +F+S+ +K +V    MI GYA  G                            
Sbjct: 311 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG---------------------------- 342

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
               S++AL +F ++++ G+ P  +T +  L+ACS  G +D+G   H+F +       +V
Sbjct: 343 ---DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEG---HQFFQSMEEEYAIV 396

Query: 349 LGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
                   +VD+  + G I +A  +   M    +++ + +++    LH
Sbjct: 397 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 444


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 306/552 (55%), Gaps = 15/552 (2%)

Query: 32  TKILF-NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            +ILF N +N N  S+N  I G+ +     +A+ L+ +++ + G   D  +   +F+ CA
Sbjct: 293 AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLM-SSGLGFDEISLSGVFRACA 351

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            +     G +I+G  +K    +D+ V NA I ++  C  L  A  VFDE   R+ VSWN+
Sbjct: 352 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 411

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I    ++G   E + LF  M   R+EPDE T   ++ AC     L  G EIH  I +SG
Sbjct: 412 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSG 470

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +     +  +L+DMY KCG +E AE+I      +  VS           G ++   K+ +
Sbjct: 471 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHN 519

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
              ++  V WN+II GYV  ++S++A  LF  M   GI PD  T    L  C+ L +   
Sbjct: 520 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 579

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH  + K+    +V + + LVDMY+KCG++  +  +F +   R+ +T+ A+I G A 
Sbjct: 580 GKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAH 639

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HGK  +AI  F  MI   + P+ +TF+ IL AC H GL+D+G +YF  M   + L P+L 
Sbjct: 640 HGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLP 699

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH-GNVSIGERAAMKLLE 509
           HYS MVD+LG+SG ++ A +LIR MP  AD V+W  L   C +H  NV + E A   LL 
Sbjct: 700 HYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLR 759

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           LDPQDS  Y LL+N+Y D+ MWE+   +R+ M    ++K PGCS +E+   L+ F+V DK
Sbjct: 760 LDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDK 819

Query: 570 SHPELEQIYDCL 581
           +HP  E+IY+ L
Sbjct: 820 AHPRWEEIYEEL 831



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 213/430 (49%), Gaps = 40/430 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+L+ G+  ++++++  M R G    D  T+ ++ KVC+ L    LG +I G 
Sbjct: 105 SWNSMLSGYLQNGESLKSIEVFVDMGREG-IEFDGRTFAIILKVCSFLEDTSLGMQIHGI 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+++G D D+   +A++ ++        +  VF     +N VSW+++I G V++     A
Sbjct: 164 VVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLA 223

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           ++ F++MQ       +     ++ +CA L +L LG ++H +  +S       +  A +DM
Sbjct: 224 LKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDM 283

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KC  ++ A+ +FD+  N    S                               +NA+I
Sbjct: 284 YAKCDNMQDAQILFDNSENLNRQS-------------------------------YNAMI 312

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q +   +AL LFH + ++G+  D ++      AC+ +  L +G+ I+    K + +
Sbjct: 313 TGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLS 372

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L+V +  A +DMY KC  +A+A +VF EM  R+++++ AII     +GK  + +  F  M
Sbjct: 373 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 432

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS---CMVDLLGR 461
           +   + PDE TF  IL AC  G L      Y  ++ S    S    + S    ++D+  +
Sbjct: 433 LRSRIEPDEFTFGSILKACTGGSL-----GYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 487

Query: 462 SGLLEEAEQL 471
            G++EEAE++
Sbjct: 488 CGMIEEAEKI 497



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 238/528 (45%), Gaps = 64/528 (12%)

Query: 1   MTITGLISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           M I G++      + ++A  A+    ++ K      ++   +   NS SW+  I G ++ 
Sbjct: 158 MQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 217

Query: 57  GKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115
             +  A+  +K+M + N G       Y  + + CA+L    LG ++  H LK  F  D  
Sbjct: 218 NLLSLALKFFKEMQKVNAGVSQS--IYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 275

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           V  A + ++  C ++  A  +FD S   N  S+N++I G+ +     +A+ LF  +    
Sbjct: 276 VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 335

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           +  DE+++ G+  ACA ++ L+ G +I+    +S L+L V +ANA +DMY KC  L  A 
Sbjct: 336 LGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAF 395

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD M  +  VS                               WNAII  + Q  +  E
Sbjct: 396 RVFDEMRRRDAVS-------------------------------WNAIIAAHEQNGKGYE 424

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
            L LF  M  + I+PD  T    L AC+  G+L  G+ IH  I K     N  +G +L+D
Sbjct: 425 TLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLID 483

Query: 356 MYAKCGNIAKALQVFHEMPERNS--------------------LTYTAIIGGLALHGKAL 395
           MY+KCG I +A ++     +R +                    +++ +II G  +  ++ 
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 543

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           DA   F+ M+ +G+ PD+ T+  +L  C +      G++  AQ+     L   +   S +
Sbjct: 544 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKK-ELQSDVYICSTL 602

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           VD+  + G L ++ +L+    +  D V W A+      HG    GE A
Sbjct: 603 VDMYSKCGDLHDS-RLMFEKSLRRDFVTWNAMICGYAHHGK---GEEA 646



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 183/439 (41%), Gaps = 64/439 (14%)

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC------- 141
           CA  G   LG +   H++  GF    +V N ++ V+ +  D   A  VFD+         
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 142 ------------------------VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
                                   VR++VSWNS+++G++++G   ++I +F DM  E +E
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            D  T   ++  C+ LED +LG +IH  +   G    V  A+AL+DMY K  +   +  +
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  +  K  VS + +I G  +   L +                               AL
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSL-------------------------------AL 224

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
             F EMQ              L +C+ L  L  G  +H    K +F  + ++ TA +DMY
Sbjct: 225 KFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMY 284

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKC N+  A  +F      N  +Y A+I G +       A+  F  ++  GL  DEI+  
Sbjct: 285 AKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLS 344

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+  AC     + EG + +  ++    LS  +   +  +D+ G+   L EA ++   M  
Sbjct: 345 GVFRACALVKGLSEGLQIYG-LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR- 402

Query: 478 AADVVVWGALFFACRLHGN 496
             D V W A+  A   +G 
Sbjct: 403 RRDAVSWNAIIAAHEQNGK 421


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 324/580 (55%), Gaps = 23/580 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFN------------VQNPNSFSWNV 48
           +  TGLI +    +R++   A S    L    +++F             V++P  F WN 
Sbjct: 38  LITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHVCSSSPGGEVEDP--FLWNA 95

Query: 49  AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL 108
            I+        ++A+ L+  ML NG    D F+  L+ K C+ LG    G +I G + K 
Sbjct: 96  VIKSHSHGKDPKQALLLFCLMLENG-VSVDKFSMSLVLKACSRLGFVKGGLQIHGILRKT 154

Query: 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF 168
           G   D+++ N +I +++ CG LG A  +FD    R+ VS+NS+I+G+V+ G    A  LF
Sbjct: 155 GLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELF 214

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVK 227
             M   R   + ++   ++S  AQ  D +++   +   + E  L       N+++D YVK
Sbjct: 215 DLM--PREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISW----NSMIDGYVK 268

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
            G++E A+++FD+M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GY
Sbjct: 269 HGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGY 328

Query: 288 VQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           VQ K   EAL +F +M+  + + PD  T V  LSA +QLG L   + +H +I ++ F L 
Sbjct: 329 VQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLG 388

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
             LG AL+DMY+KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A     ++  
Sbjct: 389 GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIER 448

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             + PD+ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E
Sbjct: 449 RSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 508

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526
            A+ LI+ MP+  + V+W     AC  H     GE     L+     +   YVLL+NMY 
Sbjct: 509 LAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGYNPSSYVLLSNMYA 568

Query: 527 DSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
               W++  ++R MM+ER +EK PGCS IE++G ++EF V
Sbjct: 569 SFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/654 (32%), Positives = 341/654 (52%), Gaps = 75/654 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG++   F  ++L +  A  +  +L    K+     +PN   WN  +R +    +  E +
Sbjct: 30  TGILHDTFFATKLNSLYA--KCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETL 87

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIH 122
            L+  M+   G  PDNFT P+  K CA L +  LG  I G   K      DM+V +A++ 
Sbjct: 88  RLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVE 147

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEV 181
           ++  CG +G A  VF+E    + V W S++ G+ ++  P EA+ LF  M  ++ V  D V
Sbjct: 148 LYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPV 207

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK--CGKL-------- 231
           T++ +VSACAQL ++  G  +H  +        +PL N+L+++Y K  C K+        
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 267

Query: 232 ------------------ESAEE---IFDSMVNK-------TVVSC-------------- 249
                             E+A E   +F  M+ K       TVVS               
Sbjct: 268 PEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGK 327

Query: 250 ------------------TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
                             T +I  Y K    D A  +F  LP+K VV W A++ GY Q  
Sbjct: 328 KIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNG 387

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
            + +++ +F  M + GI+PDAV  V  L+A S+LG     + +H ++ +  FN NV +G 
Sbjct: 388 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 447

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLM 410
           +L+++Y+KCG++  A+++F  M  R+ + ++++I    +HG+  +A+  F +M+    + 
Sbjct: 448 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVR 507

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P+ +TFL ILSAC H GLV+EG K F +M   ++L P  +H+  MVDLLGR G L +A  
Sbjct: 508 PNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMD 567

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           +I  MP+ A   VWGAL  ACR+H N+ +GE AA  L  LDP  +G Y+LL+N+Y     
Sbjct: 568 IINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGK 627

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           W+   ++R  ++ERG++K  G S +EV G ++ F+  D+ HP+ ++IY+ L +L
Sbjct: 628 WDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKL 681



 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/483 (33%), Positives = 262/483 (54%), Gaps = 35/483 (7%)

Query: 105  VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS--WNSLINGFVRSGFPR 162
            +   G   D  +      ++VS   +  A  VF++  + N  S  WN +I GF   G   
Sbjct: 743  IFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFED--IPNPCSFLWNVMIRGFATDGRFL 800

Query: 163  EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
             ++ L+  M  + ++PD+      + +CA L DL  G+ IH ++   G +  + +  AL+
Sbjct: 801  SSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALV 860

Query: 223  DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            DMY KCG +E+A                               R +FD +  + +V W +
Sbjct: 861  DMYAKCGDIEAA-------------------------------RLVFDKMAVRDLVSWTS 889

Query: 283  IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
            +I GY     + E L  F  M+++G+ P+ V+ +  L AC  LGAL  G W H ++ +  
Sbjct: 890  MISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTG 949

Query: 343  FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            F  ++++ TA++DMY+KCG++  A  +F E   ++ + ++A+I    +HG    AI  F 
Sbjct: 950  FEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFD 1009

Query: 403  EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
            +M+  G+ P  +TF  +LSAC H GL++EG+ YF  M+  F ++ KL +Y+CMVDLLGR+
Sbjct: 1010 QMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRA 1069

Query: 463  GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
            G L EA  LI +MP+  D  +WG+L  ACR+H N+ + E+ A  L  LDP  +G +VLL+
Sbjct: 1070 GQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLS 1129

Query: 523  NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
            N+Y   + W E  KVRKMM  RG  K  G S +E +  +++F V D+SHP+ E++Y  L 
Sbjct: 1130 NIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLE 1189

Query: 583  QLT 585
            +L 
Sbjct: 1190 ELA 1192



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 183/366 (50%), Gaps = 34/366 (9%)

Query: 28   LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
            +D  + +  ++ NP SF WNV IRGF   G+   +++LY +M+  G  +PD F +P   K
Sbjct: 768  IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKG-LKPDKFAFPFALK 826

Query: 88   VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             CA L     G  I  H++  G   D++V  A++ ++  CGD+  A  VFD+  VR+LVS
Sbjct: 827  SCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVS 886

Query: 148  WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
            W S+I+G+  +G+  E +  F  M+   V P+ V+++ ++ AC  L  L  G   H Y+ 
Sbjct: 887  WTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVI 946

Query: 208  ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
            ++G    + +A A+MDMY KCG L+ A  +FD    K +V  + MI  Y   G       
Sbjct: 947  QTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHG------- 999

Query: 268  IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                      ++A+ LF +M   G++P  VT    LSACS  G 
Sbjct: 1000 ------------------------HGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 328  LDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
            L++G    + + +E      +   A +VD+  + G +++A+ +   MP E ++  + +++
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095

Query: 386  GGLALH 391
            G   +H
Sbjct: 1096 GACRIH 1101



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 187/393 (47%), Gaps = 38/393 (9%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           ++   V K G   D +    +  ++  C  L  A  VFDE+   N+  WNS +  + R  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 160 FPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPL 217
              E +RLF  M     E PD  T+   + ACA L  L LG+ IH +  ++  +   + +
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            +AL+++Y KCG++  A ++F+       V  T+M+ GY +           ++ PE   
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ-----------NNDPE--- 187

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                            EALALF +M     +  D VT V  +SAC+QL  +  G  +H 
Sbjct: 188 -----------------EALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHG 230

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + +  F+ ++ L  +L+++YAK G    A  +F +MPE++ ++++ +I   A +  A +
Sbjct: 231 LVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANE 290

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-YFAQMSSIFRLSPKLKHYSCM 455
           A++ F EMI     P+ +T +  L AC     ++EG+K +   +   F L   +   + +
Sbjct: 291 ALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS--TAL 348

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +D+  +    +EA  L + +P   DVV W AL 
Sbjct: 349 IDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALL 380



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 5/231 (2%)

Query: 45   SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
            SW   I G+   G   E +  +  ++R+ G  P+  +   +   C +LG    G     +
Sbjct: 886  SWTSMISGYAHNGYNSETLGFF-DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSY 944

Query: 105  VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            V++ GF+ D+ V  A++ ++  CG L LA  +FDE+  ++LV W+++I  +   G  R+A
Sbjct: 945  VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 1004

Query: 165  IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN--ALM 222
            I LF  M    V P  VT   ++SAC+    L  G+     ++E    +   L+N   ++
Sbjct: 1005 IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEE-FVIARKLSNYACMV 1063

Query: 223  DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-GFLDIARKIFDDL 272
            D+  + G+L  A ++ ++M  +   S    ++G  +    LD+A KI D L
Sbjct: 1064 DLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL 1114


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 312/572 (54%), Gaps = 36/572 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SW V + G    G+  EA+     M  +G T P  FT   +   CA      +G ++
Sbjct: 128 DAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFTLTNVLSSCAVTQAGAVGRKV 186

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN----------------- 144
              V+KLG    + V N+V++++  CGD   A  VF+   VR+                 
Sbjct: 187 HSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRM 246

Query: 145 --------------LVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSA 189
                         +VSWN++I G+ ++G   +A++LF  M  E  + PDE T+  ++SA
Sbjct: 247 DLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--TVV 247
           CA L ++ +G+++H YI  + +     + NAL+  Y K G +E+A  I D  +     V+
Sbjct: 307 CANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T ++ GY K G ++ AR++F  +  + VV W A+I GY Q  R+ EA+ LF  M   G
Sbjct: 367 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 426

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P++ T    LS C+ L  LD G  IH    +     +  +  A++ MYA+ G+   A 
Sbjct: 427 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWAR 486

Query: 368 QVFHEMPERN-SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           ++F ++  R  ++T+T++I  LA HG+  +A+  F EM+  G+ PD IT++G+LSAC H 
Sbjct: 487 RMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHA 546

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G V+EG++Y+ Q+ +  +++P++ HY+CMVDLL R+GL  EA++ IR MP+  D + WG+
Sbjct: 547 GFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGS 606

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H N  + E AA KLL +DP +SG Y  +AN+Y     W +A ++ K  +E+ V
Sbjct: 607 LLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            K  G S   +   ++ F   D  HP+ + +Y
Sbjct: 667 RKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 698



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 207/426 (48%), Gaps = 40/426 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +++  N+++ +F   G L  A  VF E   R+ VSW  ++ G  R+G   EAI+   DM 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            +   P + T+  ++S+CA  +   +GR++H ++ + GL   VP+AN++++MY KCG  E
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  ++V S   M+      G +D+A  +F+ +P + +V WNA+I GY Q   
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 293 SKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-------- 343
             +AL LF  M   + + PD  T    LSAC+ LG +  G  +H +I +           
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 344 -------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
                                    +LNV+  TAL++ Y K G++  A ++F  M  R+ 
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +TA+I G   +G+  +AI  F  MI  G  P+  T   +LS C     +D G++   +
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR 456

Query: 439 -MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            + S+   S  + +   ++ +  RSG    A ++   +    + + W ++  A   HG  
Sbjct: 457 AIRSLLERSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ- 513

Query: 498 SIGERA 503
             GE A
Sbjct: 514 --GEEA 517



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 179/403 (44%), Gaps = 67/403 (16%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D    +  ++   +  SWN  I G+ + G   +A+ L+ +ML      PD FT   +  
Sbjct: 246 MDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----- 142
            CA+LG   +G ++  ++L+     +  V NA+I  +   G +  A  + D+S       
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 143 ----------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
                                       R++V+W ++I G+ ++G   EAI LFR M   
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITC 425

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             EP+  T+  ++S CA L  L+ G++IH     S L  +  ++NA++ MY + G    A
Sbjct: 426 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWA 485

Query: 235 EEIFDSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
             +FD +   K  ++ T+MIV  A+ G                               + 
Sbjct: 486 RRMFDQVCWRKETITWTSMIVALAQHG-------------------------------QG 514

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTA 352
           +EA+ LF EM   G++PD +T V  LSACS  G +++G   +  I+ E+     +     
Sbjct: 515 EEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYAC 574

Query: 353 LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
           +VD+ A+ G  ++A +    MP E +++ + +++    +H  A
Sbjct: 575 MVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA 617



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 45/351 (12%)

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK----CGKLESAEEIFDS--MVN 243
           C    +   GR IH    ++GL  +  L N L+  Y +     G L  A  +FD   +  
Sbjct: 36  CQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLAR 95

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + V +  +++  +AK G L  AR +F ++PE+  V W  ++ G  +A R  EA+    +M
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            A G  P   T  + LS+C+   A   G  +H F+ K      V +  ++++MY KCG+ 
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDA 215

Query: 364 AKALQVFHEMPERNS-------------------------------LTYTAIIGGLALHG 392
             A  VF  MP R+                                +++ A+I G   +G
Sbjct: 216 ETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275

Query: 393 KALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
               A+  FS M+    M PDE T   +LSAC + G V  G++  A +     ++   + 
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT-EMAYNSQV 334

Query: 452 YSCMVDLLGRSGLLEEAEQLI-RSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + ++    +SG +E A +++ +SM    +V+ + AL     L G V IG+
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL-----LEGYVKIGD 380


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 302/538 (56%), Gaps = 32/538 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I GF + G + EA+ +  +M +    + D  T   +  +CA       G  +  +
Sbjct: 215 SWNAMISGFCQNGNVAEALRVLDRM-KTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLY 273

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+K G + D++V NA+I+++   G L  A  VFD   VR+LVSWNS+I  + ++  P  A
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           +  F++M    + PD +T++ + S   QL D  +GR +H ++                  
Sbjct: 334 LGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFV------------------ 375

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
            V+C  LE    I +++VN            YAK G +D AR +F+ LP + V+ WN +I
Sbjct: 376 -VRCRWLEVDIVIGNALVNM-----------YAKLGSIDCARAVFEQLPSRDVISWNTLI 423

Query: 285 GGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
            GY Q   + EA+  ++ M+    I P+  T V  L A S +GAL  G+ IH  + K   
Sbjct: 424 TGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCL 483

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
            L+V + T L+DMY KCG +  A+ +F+E+P+  S+ + AII  L +HG    A+  F +
Sbjct: 484 FLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKD 543

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M   G+  D ITF+ +LSAC H GLVDE +  F  M   +R+ P LKHY CMVDL GR+G
Sbjct: 544 MRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAG 603

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            LE+A  L+ +MP+ AD  +WG L  ACR+HGN  +G  A+ +LLE+D ++ G YVLL+N
Sbjct: 604 YLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSN 663

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +Y +   WE A KVR +  +RG+ KTPG SS+ V  ++  F   ++SHP+  +IY+ L
Sbjct: 664 IYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEEL 721



 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 153/480 (31%), Positives = 257/480 (53%), Gaps = 43/480 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L   +    ++Q  N FSWN  +  ++  G+ R+++D   ++L   G RPD +T+P + 
Sbjct: 98  DLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVL 157

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C SL     G ++   VLK+GF+ D+YV  ++IH++   G + +A  VF +  VR++ 
Sbjct: 158 KACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVG 214

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN++I+GF ++G   EA+R+   M+ E V+ D VT+  M+  CAQ  D+  G  +H Y+
Sbjct: 215 SWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYV 274

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + GL   V ++NAL++MY K G+L+ A+ +FD M  + +VS                  
Sbjct: 275 IKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVS------------------ 316

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                        WN+II  Y Q      AL  F EM   G++PD +T V   S   QL 
Sbjct: 317 -------------WNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLS 363

Query: 327 ALDDGIWIHRFIEKENF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
               G  +H F+ +  +  +++V+G ALV+MYAK G+I  A  VF ++P R+ +++  +I
Sbjct: 364 DRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLI 423

Query: 386 GGLALHGKALDAISYFSEM-IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIF 443
            G A +G A +AI  ++ M  G  ++P++ T++ IL A  H G + +G K   ++  +  
Sbjct: 424 TGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCL 483

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            L   +   +C++D+ G+ G LE+A  L   +P     V W A+  +  +HG+   GE+A
Sbjct: 484 FLDVFVA--TCLIDMYGKCGRLEDAMSLFYEIPQETS-VPWNAIISSLGIHGH---GEKA 537



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 8/216 (3%)

Query: 31  CTKILF-NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + +F  + + +  SWN  I G+ + G   EA+D Y  M       P+  T+  +    
Sbjct: 403 CARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAY 462

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           + +G    G +I G ++K    +D++V   +I ++  CG L  A ++F E      V WN
Sbjct: 463 SHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWN 522

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI--- 206
           ++I+     G   +A++LF+DM+ + V+ D +T + ++SAC+      L  E  W     
Sbjct: 523 AIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSH---SGLVDEAQWCFDTM 579

Query: 207 -SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             E  +   +     ++D++ + G LE A  +  +M
Sbjct: 580 QKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNM 615



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +VVL T LV +YA  G+++ +   F  +  +N  ++ +++      G+  D++   +E++
Sbjct: 82  DVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELL 141

Query: 406 GV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
            + G+ PD  TF  +L AC    L D  + +   +   F     +   + ++ L  R G 
Sbjct: 142 SLSGVRPDFYTFPPVLKACL--SLADGEKMHCWVLKMGFEHDVYVA--ASLIHLYSRFGA 197

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           +E A ++   MP+  DV  W A+      +GNV+
Sbjct: 198 VEVAHKVFVDMPV-RDVGSWNAMISGFCQNGNVA 230


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/494 (38%), Positives = 292/494 (59%), Gaps = 8/494 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRS 158
           +I   V+  G   +  +   +IH ++ C +L  A  VFD+   +   + WN +I  + ++
Sbjct: 73  QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132

Query: 159 GFPREAIRLFRDMQLERVEP---DEVTMIGMVSACAQLEDLN-LGREIHWYISESGLTLT 214
              +E++ LF  M L    P   D+ T   + +AC++   L   G  +H  + + G    
Sbjct: 133 PSSQESLYLFHQM-LAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESD 191

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N+L++MY    ++  A+ +FD M  + V++ T+++ GYA  G L  AR++FD +P 
Sbjct: 192 IFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPG 251

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIW 333
           +  V W  ++ GYV  +   EAL  F++M     +KP+    V  LSAC+ LGALD G W
Sbjct: 252 RNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKW 311

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH +I+K    L+  + TAL+DMYAKCG I  A +VF  + +R+ LT+T++I GL++HG 
Sbjct: 312 IHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGL 371

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             + +  FSEM+  G  PD+IT LG+L+ C H GLV+EG   F  M  ++ + PKL+HY 
Sbjct: 372 GAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYG 431

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP- 512
           C++DLLGR+G LE A + I+SMPM  DVV W AL  ACR+HG+V +GER    + EL P 
Sbjct: 432 CLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPG 491

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
              G YVLL+N+Y     WE   KVRK M +RG E  PGCS IE++G+++EF+  DK HP
Sbjct: 492 SHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHP 551

Query: 573 ELEQIYDCLVQLTR 586
            + +I   L ++ R
Sbjct: 552 RISEINKKLNEVLR 565



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 193/405 (47%), Gaps = 70/405 (17%)

Query: 26  KNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG-GTRPDNFTY 82
           +NL +  +I+F+     P +  WN+ I+ + +T   +E++ L+ QML +G  T  D +T+
Sbjct: 101 RNLSF-ARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTF 159

Query: 83  PLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
             +F  C+    LR  G  + G V+K G++ D++V N++++++     +  A  VFDE  
Sbjct: 160 TFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219

Query: 142 VRNLVSWNSLINGFVRSG-------------------------------FPREAIRLFRD 170
            R++++W S++ G+   G                               F  EA++ F D
Sbjct: 220 QRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFND 279

Query: 171 MQL-ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           M   + V+P+E  ++ ++SACA L  L+ G+ IH YI ++ + L+  ++ AL+DMY KCG
Sbjct: 280 MLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCG 339

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
           +++ A  +FD +  + +++ T+MI G +  G                             
Sbjct: 340 RIDCARRVFDGLHKRDLLTWTSMISGLSMHGL---------------------------- 371

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVV 348
                E L  F EM A G KPD +T +  L+ CS  G +++G+ I H  I        + 
Sbjct: 372 ---GAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
               L+D+  + G +  A +    MP E + + + A++    +HG
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 156/352 (44%), Gaps = 32/352 (9%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW V + G++      EA+  +  ML +   +P+      +   CA LG    G  I
Sbjct: 253 NDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWI 312

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             ++ K    +   +  A+I ++  CG +  A  VFD    R+L++W S+I+G    G  
Sbjct: 313 HVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLG 372

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANA 220
            E +  F +M  E  +PD++T++G+++ C+    +  G  I H  I   G+   +     
Sbjct: 373 AECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGC 432

Query: 221 LMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           L+D+  + G+LESA E   SM +   VV+   ++      G +D+  +I + + E  + P
Sbjct: 433 LIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE--LCP 490

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD---------D 330
             +  GGYV          L   + A+  + ++VT V    A SQ G+           D
Sbjct: 491 -GSHGGGYV----------LLSNLYASMGQWESVTKVR--KAMSQRGSEGCPGCSWIEID 537

Query: 331 GIWIHRFIEKENFN-----LNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           G+ +H F+  +  +     +N  L   L  +  + G +    QV  ++ E +
Sbjct: 538 GV-VHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEED 588


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 198/496 (39%), Positives = 289/496 (58%), Gaps = 13/496 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           EI    ++   D D  V   +   + + G L LA  +   +     V + S I+     G
Sbjct: 42  EIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 101

Query: 160 FPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
             R A+ L  +M L R  + P   T+   + AC  L    +GR +H Y  +  L+    +
Sbjct: 102 LHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLA---VGRALHGYAVKLALSGEPYV 158

Query: 218 ANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           A AL+ MY + G+  +A  +FD M  +  VVS T M+  YAK G LD AR +FD LP K 
Sbjct: 159 ATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKD 218

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           +V WNA++ GY Q  R  EAL LF +M  +G++PD V+ V  LSA +QLG  + G W+H 
Sbjct: 219 LVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHS 278

Query: 337 FI----EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLA 389
           F+     +    LN  +GTALVDMY KCG++ +A+ VF ++    +R+ + + A+I G A
Sbjct: 279 FVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYA 338

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
           +HG++ +A+  F ++   GL P +ITF+G+L+AC H GLVDEGR  FA M   + + PK+
Sbjct: 339 MHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKV 398

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           +HY CMVDLLGR+G +EEA  L++SM    D  +W +L  ACRLH N+++G+R A  L+ 
Sbjct: 399 EHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVG 458

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
               +SG YVLL+NMY  +  W E G+VR MM   GV+K PGCS++EV   + EF+  D+
Sbjct: 459 NGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDR 518

Query: 570 SHPELEQIYDCLVQLT 585
           SHP   +IY  L ++ 
Sbjct: 519 SHPRSAEIYAKLEEVN 534



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 21/282 (7%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  + G+ + G+  EA+ L++QMLR+ G  PD  +  L     A LG    G  +   V
Sbjct: 222 WNAMMDGYTQHGRPSEALRLFRQMLRS-GVEPDEVSVVLALSAVAQLGTAESGRWLHSFV 280

Query: 106 LKLG----FDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRS 158
              G      ++  V  A++ ++  CG L  A  VF +      R++V+WN++ING+   
Sbjct: 281 ANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMH 340

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPL 217
           G  REA+  F  ++ + + P ++T IG+++AC+    ++ GR +   + E  G+   V  
Sbjct: 341 GRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEH 400

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-GFLDIARKIFDDL---- 272
              ++D+  + G++E A ++  SM  K   +    ++G  +    L + +++ D L    
Sbjct: 401 YGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNG 460

Query: 273 ---PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
                 YV+  N     Y  A + +E   +   M+A+G++ +
Sbjct: 461 LANSGTYVLLSNM----YAAAGKWREVGRVRSMMRASGVQKE 498



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 48/219 (21%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  I G+   G+ REA++ + Q LR  G  P + T+  +   C+  GL   G  +F  
Sbjct: 329 AWNAMINGYAMHGRSREALEAFGQ-LRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAA 387

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           + +                     + G+   V    C+ +L+          R+G   EA
Sbjct: 388 MEE---------------------EYGIVPKVEHYGCMVDLLG---------RAGRVEEA 417

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA---- 220
             L + M   + +PD      ++ AC   ++L LG+ +  Y+  +G      LAN+    
Sbjct: 418 FDLVQSM---KAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNG------LANSGTYV 468

Query: 221 -LMDMYVKCGKLESAEEIFDSMVNKTV---VSCTTMIVG 255
            L +MY   GK      +   M    V     C+ + VG
Sbjct: 469 LLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVG 507


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/554 (36%), Positives = 308/554 (55%), Gaps = 36/554 (6%)

Query: 33  KILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
           +ILF+ +   +  SWN  I G+ ++G  +EA+      L +G    D+ T   L   C  
Sbjct: 205 RILFDEMPTRDMGSWNAMISGYCQSGNAKEAL-----TLSDGLRAMDSVTVVSLLSACTE 259

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
            G    G  I  + +K G + +++V N +I ++   G L     VFD   VR+L+SWNS+
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSI 319

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I  +  +  P  AI LF++M+L R++PD +T+I + S  +QL ++   R +  +    G 
Sbjct: 320 IKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW 379

Query: 212 TLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
            L  + + NA++ MY K G ++SA  +F+ + NK V+S  T+I GYA+ GF   A ++++
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            + E+         GG + A +                     T V  L ACSQ GAL  
Sbjct: 440 IMEEE---------GGEISANQG--------------------TWVSVLPACSQAGALRQ 470

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G+ +H  + K    L+V +GT+L DMY KCG +  AL +F+++P  NS+ +  +I     
Sbjct: 471 GMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGF 530

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG    A+  F EM+  G+ PD ITF+ +LSAC H GLVDEG   F  M + + ++P LK
Sbjct: 531 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLK 590

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CMVDL GR+G LE A   I+SMP+  D  +WGAL  ACR+HGNV +G+ A+  L E+
Sbjct: 591 HYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 650

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +P+  G +VLL+NMY  +  WE   ++R +   +G+ KTPG SS+EV+  +  F   +++
Sbjct: 651 EPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQT 710

Query: 571 HPELEQIYDCLVQL 584
           HP  E++Y  L  L
Sbjct: 711 HPMYEEMYRELTAL 724



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 254/515 (49%), Gaps = 54/515 (10%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++ N + ++WN+ I G+   G   E +  +   + + G +PD  T+P + K C ++    
Sbjct: 111 HIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD-- 168

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G +I    LK GF  D+YV  ++IH++   G +  A  +FDE   R++ SWN++I+G+ 
Sbjct: 169 -GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYC 227

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           +SG  +EA+ L   ++      D VT++ ++SAC +  D N G  IH Y  + GL   + 
Sbjct: 228 QSGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELF 283

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           ++N L+D+Y + G L+  +++FD M  + ++S                            
Sbjct: 284 VSNKLIDLYAEFGSLKDCQKVFDRMYVRDLIS---------------------------- 315

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              WN+II  Y   ++   A+ LF EM+ + I+PD +T +   S  SQLG +     +  
Sbjct: 316 ---WNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQG 372

Query: 337 FIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           F  ++ + L ++ +G A+V MYAK G +  A  VF+ +P ++ +++  II G A +G A 
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFAS 432

Query: 396 DAISYFS--EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY- 452
           +AI  ++  E  G  +  ++ T++ +L AC   G + +G K   ++    +    L  + 
Sbjct: 433 EAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL---LKNGLYLDVFV 489

Query: 453 -SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
            + + D+ G+ G L++A  L   +P   + V W  L      HG+   GE+A M   E+ 
Sbjct: 490 GTSLADMYGKCGRLDDALSLFYQIPR-VNSVPWNTLIACHGFHGH---GEKAVMLFKEML 545

Query: 512 PQ----DSGIYVLLANMYRDSNMWEEAGKVRKMME 542
            +    D   +V L +    S + +E     +MM+
Sbjct: 546 DEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQ 580



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 189/395 (47%), Gaps = 41/395 (10%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S  F  ++LI   A  E  +L  C K+   +   +  SWN  I+ +    +   A+ 
Sbjct: 277 GLESELFVSNKLIDLYA--EFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIL 334

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHV 123
           L+++M R    +PD  T   L  + + LG       + G  L+ G F  D+ + NAV+ +
Sbjct: 335 LFQEM-RLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE--RVEPDEV 181
           +   G +  A  VF+    ++++SWN++I+G+ ++GF  EAI ++  M+ E   +  ++ 
Sbjct: 394 YAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQG 453

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T + ++ AC+Q   L  G ++H  + ++GL L V +  +L DMY KCG+           
Sbjct: 454 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGR----------- 502

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                               LD A  +F  +P    VPWN +I  +      ++A+ LF 
Sbjct: 503 --------------------LDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 542

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAK 359
           EM   G+KPD +T V  LSACS  G +D+G W    ++ + + +   L     +VD+Y +
Sbjct: 543 EMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTD-YGITPSLKHYGCMVDLYGR 601

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
            G +  AL     MP + ++  + A++    +HG 
Sbjct: 602 AGQLEIALNFIKSMPLQPDASIWGALLSACRVHGN 636



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 173/369 (46%), Gaps = 40/369 (10%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEP 178
           +++++   G++ LA   FD    R++ +WN +I+G+ R+G+  E IR F    L   ++P
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D  T   ++ AC  + D   G +IH    + G    V +A +L+ +Y + G         
Sbjct: 152 DYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYG--------- 199

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
            ++VN                     AR +FD++P + +  WNA+I GY Q+  +KEAL 
Sbjct: 200 -AVVN---------------------ARILFDEMPTRDMGSWNAMISGYCQSGNAKEALT 237

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           L   ++A     D+VT V  LSAC++ G  + G+ IH +  K      + +   L+D+YA
Sbjct: 238 LSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYA 293

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           + G++    +VF  M  R+ +++ +II    L+ + L AI  F EM    + PD +T + 
Sbjct: 294 EFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLIS 353

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           + S     G +   R               +   + +V +  + GL++ A  +   +P  
Sbjct: 354 LASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-N 412

Query: 479 ADVVVWGAL 487
            DV+ W  +
Sbjct: 413 KDVISWNTI 421


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 318/615 (51%), Gaps = 72/615 (11%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   + FSWNV + G+ + G + EA+DLY +ML   G RPD +T+P + + C  +
Sbjct: 152 RVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW-AGMRPDVYTFPCVLRTCGGI 210

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G E+  HVL+ GF  ++ V NA++ ++  CGD+  A  VFD   V + +SWN++I
Sbjct: 211 PDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMI 270

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G   +      + LF  M    V+P+ +T+  +  A   L ++   +E+H +  + G  
Sbjct: 271 AGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFA 330

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF--- 269
           + V   N+L+ MY   G++  A +IF  M  K  +S T MI GY K GF D A +++   
Sbjct: 331 IDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALM 390

Query: 270 -------DDLP-----------------------------EKYVVPWNAIIGGYVQAK-- 291
                  DD+                               +YVV  NA++  Y ++K  
Sbjct: 391 ELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHI 450

Query: 292 -----------------------------RSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                        RS EAL  F  M    +KP++VT +  LSAC
Sbjct: 451 DKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSAC 509

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +  GAL  G  IH ++ +        +  AL+D+Y KCG  + A   F    E++ +++ 
Sbjct: 510 AATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 569

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            ++ G   HG    A+S F++M+ +G  PDE+TF+ +L AC   G+V +G + F  M+  
Sbjct: 570 IMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F + P LKHY+CMVDLL R G L EA  LI  MP+  D  VWGAL   CR+H +V +GE 
Sbjct: 630 FSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL 689

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  +LEL+P D   +VLL ++Y D+  W +  +VRK M E+G+E+  GCS +EV G+ +
Sbjct: 690 AAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTH 749

Query: 563 EFIVRDKSHPELEQI 577
            F+  D+SHP++++I
Sbjct: 750 AFLTDDESHPQIKEI 764



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 140/581 (24%), Positives = 246/581 (42%), Gaps = 102/581 (17%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC-----ASLGLRFLG--- 98
           + A+R     G++ +A+     +L +    PD   Y  LF++C        G+R      
Sbjct: 68  SAALRALCSHGQLAQAL----WLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARAD 123

Query: 99  --YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
             +  FG  L+LG        NA++ + V  G++  A  VF +   R++ SWN ++ G+ 
Sbjct: 124 AEHPSFG--LRLG--------NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYG 173

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           + GF  EA+ L+  M    + PD  T   ++  C  + D  +GRE+H ++   G    V 
Sbjct: 174 KVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVD 233

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + NAL+ MY KCG + +A ++FD M     +S   MI G+ +    +   ++F  + E  
Sbjct: 234 VLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENE 293

Query: 277 VVP---------------------------------------WNAIIGGYVQAKRSKEAL 297
           V P                                        N++I  Y    R  +A 
Sbjct: 294 VQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAG 353

Query: 298 ALFHEMQA----------TGIK----PDAVTTVHCLSACSQL-----------------G 326
            +F  M+           +G +    PD    V+ L     +                 G
Sbjct: 354 KIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLG 413

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            LD GI +H   + + F   VV+  AL++MYAK  +I KA++VF  M E++ ++++++I 
Sbjct: 414 RLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIA 473

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G   + ++ +A+ YF  M+G  + P+ +TF+  LSAC   G +  G++  A    + R  
Sbjct: 474 GFCFNHRSFEALYYFRYMLG-HVKPNSVTFIAALSACAATGALRSGKEIHAY---VLRCG 529

Query: 447 PKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
              + Y  + ++DL  + G    A     S+    DVV W  +      HG   I     
Sbjct: 530 IGSEGYVPNALLDLYVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFVAHGLGDIALSLF 588

Query: 505 MKLLEL-DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            +++E+ +  D   +V L      + M  +  ++  MM E+
Sbjct: 589 NQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++SK++D   ++   +   +  SW+  I GF    +  EA+  ++ ML  G  +P++ T+
Sbjct: 445 AKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML--GHVKPNSVTF 502

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                 CA+ G    G EI  +VL+ G   + YV NA++ ++V CG    A   F     
Sbjct: 503 IAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSE 562

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++VSWN +++GFV  G    A+ LF  M      PDEVT + ++ AC++   +  G E+
Sbjct: 563 KDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWEL 622

Query: 203 -HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            H    +  +   +     ++D+  + GKL  A  + + M  K
Sbjct: 623 FHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK 665


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 306/552 (55%), Gaps = 15/552 (2%)

Query: 32  TKILF-NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            +ILF N +N N  S+N  I G+ +     +A+ L+ +++ + G   D  +   +F+ CA
Sbjct: 335 AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLM-SSGLGFDEISLSGVFRACA 393

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            +     G +I+G  +K    +D+ V NA I ++  C  L  A  VFDE   R+ VSWN+
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 453

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I    ++G   E + LF  M   R+EPDE T   ++ AC     L  G EIH  I +SG
Sbjct: 454 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSG 512

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +     +  +L+DMY KCG +E AE+I      +  VS           G ++   K+ +
Sbjct: 513 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHN 561

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
              ++  V WN+II GYV  ++S++A  LF  M   GI PD  T    L  C+ L +   
Sbjct: 562 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 621

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH  + K+    +V + + LVDMY+KCG++  +  +F +   R+ +T+ A+I G A 
Sbjct: 622 GKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAH 681

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HGK  +AI  F  MI   + P+ +TF+ IL AC H GL+D+G +YF  M   + L P+L 
Sbjct: 682 HGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLP 741

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH-GNVSIGERAAMKLLE 509
           HYS MVD+LG+SG ++ A +LIR MP  AD V+W  L   C +H  NV + E A   LL 
Sbjct: 742 HYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLR 801

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           LDPQDS  Y LL+N+Y D+ MWE+   +R+ M    ++K PGCS +E+   L+ F+V DK
Sbjct: 802 LDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDK 861

Query: 570 SHPELEQIYDCL 581
           +HP  E+IY+ L
Sbjct: 862 AHPRWEEIYEEL 873



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 213/430 (49%), Gaps = 40/430 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+L+ G+  ++++++  M R G    D  T+ ++ KVC+ L    LG +I G 
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREG-IEFDGRTFAIILKVCSFLEDTSLGMQIHGI 205

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+++G D D+   +A++ ++        +  VF     +N VSW+++I G V++     A
Sbjct: 206 VVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLA 265

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           ++ F++MQ       +     ++ +CA L +L LG ++H +  +S       +  A +DM
Sbjct: 266 LKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDM 325

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KC  ++ A+ +FD+  N    S                               +NA+I
Sbjct: 326 YAKCDNMQDAQILFDNSENLNRQS-------------------------------YNAMI 354

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q +   +AL LFH + ++G+  D ++      AC+ +  L +G+ I+    K + +
Sbjct: 355 TGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLS 414

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L+V +  A +DMY KC  +A+A +VF EM  R+++++ AII     +GK  + +  F  M
Sbjct: 415 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 474

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS---CMVDLLGR 461
           +   + PDE TF  IL AC  G L      Y  ++ S    S    + S    ++D+  +
Sbjct: 475 LRSRIEPDEFTFGSILKACTGGSL-----GYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 529

Query: 462 SGLLEEAEQL 471
            G++EEAE++
Sbjct: 530 CGMIEEAEKI 539



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 190/449 (42%), Gaps = 66/449 (14%)

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           NF++  +FK CA  G   LG +   H++  GF    +V N ++ V+ +  D   A  VFD
Sbjct: 50  NFSF--VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFD 107

Query: 139 ESC-------------------------------VRNLVSWNSLINGFVRSGFPREAIRL 167
           +                                 VR++VSWNS+++G++++G   ++I +
Sbjct: 108 KMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEV 167

Query: 168 FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
           F DM  E +E D  T   ++  C+ LED +LG +IH  +   G    V  A+AL+DMY K
Sbjct: 168 FVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAK 227

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
             +   +  +F  +  K  VS + +I G  +   L +                       
Sbjct: 228 GKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSL----------------------- 264

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
                   AL  F EMQ              L +C+ L  L  G  +H    K +F  + 
Sbjct: 265 --------ALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADG 316

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           ++ TA +DMYAKC N+  A  +F      N  +Y A+I G +       A+  F  ++  
Sbjct: 317 IVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS 376

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
           GL  DEI+  G+  AC     + EG + +  ++    LS  +   +  +D+ G+   L E
Sbjct: 377 GLGFDEISLSGVFRACALVKGLSEGLQIYG-LAIKSSLSLDVCVANAAIDMYGKCQALAE 435

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHGN 496
           A ++   M    D V W A+  A   +G 
Sbjct: 436 AFRVFDEMR-RRDAVSWNAIIAAHEQNGK 463


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/424 (42%), Positives = 267/424 (62%), Gaps = 3/424 (0%)

Query: 144 NLVSWNSLINGFVRSGFPREAIRLF-RDMQLERV-EPDEVTMIGMVSACAQLEDLNLGRE 201
           N+ SWN++I   +  G    A+  F R + L     P+E     ++ ACA LE +  G +
Sbjct: 75  NVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLK 134

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H  + +SGL   + L  +L+DMY K  +  SA ++FD M  + VVS  TM+ GY   G 
Sbjct: 135 VHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGD 194

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLS 320
           L+ AR++FD + E+ V+ WNA+IGGYVQ  +  +A+ +FHEMQ  G + PD VT V  LS
Sbjct: 195 LESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLS 254

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+ +GALD G WI RF+      LN+ LG AL+DMYAKCG + +A ++F  M ER+ ++
Sbjct: 255 ACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVIS 314

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           ++ +I G   HG A +A  Y+S+M+  G+ P+E+TF+G+LSAC H GLVD+G + F++M 
Sbjct: 315 WSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMI 374

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
             +R+ PK+ HY C++DLL R+G L+EAE LI SMP+  +V+VWGAL   CR+H +   G
Sbjct: 375 QEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRRG 434

Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
           ER A  LLELD + +G YV +A         ++A      M+ +G+ K PGCS IEV+  
Sbjct: 435 ERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKIEVHNT 494

Query: 561 LYEF 564
           ++EF
Sbjct: 495 VHEF 498



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 195/412 (47%), Gaps = 68/412 (16%)

Query: 15  RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY-KQMLRNG 73
           +LI  CA   + NL +   I   + NPN FSWN  I+  +  G    A++ + +Q+    
Sbjct: 50  KLIGACA--ANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPS 107

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
              P+ + Y  L K CA L     G ++   V+K G D ++++  +++ ++    +   A
Sbjct: 108 APNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASA 167

Query: 134 CNVFDESCVRNLVSWNS-------------------------------LINGFVRSGFPR 162
             VFDE  +R++VSWN+                               +I G+V++G   
Sbjct: 168 GQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYS 227

Query: 163 EAIRLFRDMQ-LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +AI +F +MQ +  V PD+VT++ ++SACA +  L+ GR I  ++   G  L + L NAL
Sbjct: 228 DAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNAL 287

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG +E A  IFD M  + V+S +TMI G    G  D                  
Sbjct: 288 IDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDAD------------------ 329

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEK 340
                        EA   + +M   G+KP+ VT +  LSACS  G +D GI +  R I++
Sbjct: 330 -------------EAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQE 376

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
                 V     ++D+ ++ G + +A  + + MP E N + + A++GG  +H
Sbjct: 377 YRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIH 428



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 148/316 (46%), Gaps = 12/316 (3%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L+   ++   +   +  SWN  I G+++ GK  +A++++ +M + GG  PD+ T   + 
Sbjct: 194 DLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVL 253

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA +G    G  I   V   G  +++Y+ NA+I ++  CG +  A  +FD    R+++
Sbjct: 254 SACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVI 313

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWY 205
           SW+++I G    G   EA   +  M    V+P+EVT +G++SAC+    ++ G E+    
Sbjct: 314 SWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRM 373

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVG---YAKFGF 261
           I E  +   V     ++D+  + G+L+ AE++ +SM +   V+    ++ G   +  F  
Sbjct: 374 IQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRR 433

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI-------KPDAVT 314
            +   +   +L  +Y   +  I G      R  +A   +  MQ  GI       K +   
Sbjct: 434 GERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKIEVHN 493

Query: 315 TVHCLSACSQLGALDD 330
           TVH    C    +  D
Sbjct: 494 TVHEFKECDNTSSGKD 509


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/460 (39%), Positives = 276/460 (60%), Gaps = 31/460 (6%)

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
           C  +  A  +F +    N+ +WN++I G+  S  P  A+ L+R M +  +EPD  T   +
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           + A A+L D+  G ++H     +G    V + N L+ MY  CG  ESA            
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAH----------- 195

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
                               K+F+ + E+ +V WN++I GY    R  EAL LF EM   
Sbjct: 196 --------------------KLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLR 235

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G++PD  T V  LSAC++LGAL  G   H ++ K   + N+  G AL+D+YAKCG+I +A
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            +VF EM E++ +++T++I GLA++G   +A+  F E+   GLMP EITF+G+L AC H 
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G+VDEG  YF +M   + + PK++HY CMVDLLGR+GL+++A + I++MPM  + VVW  
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  AC +HG++++GE A  +LL+L+P+ SG YVLL+N+Y     W +  KVR+ M   GV
Sbjct: 416 LLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGV 475

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +KTPG S +E+   L+EF++ D+SHP+ E+IY  L ++T+
Sbjct: 476 KKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITK 515



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 200/379 (52%), Gaps = 39/379 (10%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           L++FC+      + Y  +I   +QNPN F+WN  IRG+ E+     A++LY+QM      
Sbjct: 83  LLSFCS-----PMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQM-HVSCI 136

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
            PD  TYP L K  A L     G ++    ++ GF+  ++V N ++H++ +CG    A  
Sbjct: 137 EPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHK 196

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +F+    RNLV+WNS+ING+  +G P EA+ LFR+M L  VEPD  TM+ ++SACA+L  
Sbjct: 197 LFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGA 256

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L LGR  H Y+ + GL   +   NAL+D+Y KCG +  A ++FD M  K+VVS T++IVG
Sbjct: 257 LALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG 316

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
            A  GF                                KEAL LF E++  G+ P  +T 
Sbjct: 317 LAVNGF-------------------------------GKEALELFKELERKGLMPSEITF 345

Query: 316 VHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
           V  L ACS  G +D+G  +  R  E+      +     +VD+  + G + +A +    MP
Sbjct: 346 VGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP 405

Query: 375 -ERNSLTYTAIIGGLALHG 392
            + N++ +  ++G   +HG
Sbjct: 406 MQPNAVVWRTLLGACTIHG 424


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 215/618 (34%), Positives = 319/618 (51%), Gaps = 69/618 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDY--CTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +GL++  FA SRLI F   +    L +    ++L  V  PN+FS N+ ++   E G    
Sbjct: 30  SGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMVLKAAREHGLPHL 89

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG------------ 109
            + LY  M       PD +T+ +L   CA+      G ++  H ++ G            
Sbjct: 90  CLPLYASM----SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALM 145

Query: 110 ---------------FDV----DMYVHNAVIHVFVSCGDLGLACNVFDE------SCVRN 144
                          FD     D    N ++  +V   D+  A  VF        + V +
Sbjct: 146 SMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSS 205

Query: 145 LVS-------------------------WNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +VS                         W ++I+ F R+G   EA+ LF DM+ E    D
Sbjct: 206 MVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVD 265

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E  M+ +V+ACA+LE    G   H     +GL   + + NAL+ MY     + +A  +FD
Sbjct: 266 EAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFD 325

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           S       S  +MI GY K G +  A+++F  +P+K  V W  +I G VQ  +S EAL +
Sbjct: 326 SGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTI 385

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F+ MQA GIKPD VT V  +SAC+ + +L+ G  +H +I +  + + V+LGT+L+DMY K
Sbjct: 386 FNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMK 445

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEITFLG 418
           CG +  AL+VF  M ER +  + A+I GLA++G  + ++  FSEM       P+EITF G
Sbjct: 446 CGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTG 505

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC H GLV+EG+ +F  M   + + P ++HY CMVDLLGR+G ++EAE LI SMPM+
Sbjct: 506 VLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMS 565

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            DV  WGAL  +C  HG+  +GER   KL+ LDP   G + +L+N+Y    MW+    +R
Sbjct: 566 PDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLR 625

Query: 539 KMMEERGVEKTPGCSSIE 556
             M++  V K PG S +E
Sbjct: 626 GSMKQWHVPKIPGSSVVE 643


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 312/572 (54%), Gaps = 36/572 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SW V + G    G+  EA+     M  +G T P  FT   +   CA      +G ++
Sbjct: 128 DAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFTLTNVLSSCAVTQAGAVGRKV 186

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN----------------- 144
              V+KLG    + V N+V++++  CGD   A  VF+   VR+                 
Sbjct: 187 HSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRM 246

Query: 145 --------------LVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSA 189
                         +VSWN++I G+ ++G   +A++LF  M  E  + PDE T+  ++SA
Sbjct: 247 DLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--TVV 247
           CA L ++ +G+++H YI  + +     + NAL+  Y K G +E+A  I D  +     V+
Sbjct: 307 CANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T ++ GY K G ++ AR++F  +  + VV W A+I GY Q  R+ EA+ LF  M   G
Sbjct: 367 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 426

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P++ T    LS C+ L  LD G  IH    +     +  +  A++ MYA+ G+   A 
Sbjct: 427 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWAR 486

Query: 368 QVFHEMPERN-SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           ++F ++  R  ++T+T++I  LA HG+  +A+  F EM+  G+ PD IT++G+LSAC H 
Sbjct: 487 RMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHA 546

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G V+EG++Y+ Q+ +  +++P++ HY+CMVDLL R+GL  EA++ IR MP+  D + WG+
Sbjct: 547 GFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGS 606

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H N  + E AA KLL +DP +SG Y  +AN+Y     W +A ++ K  +E+ V
Sbjct: 607 LLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            K  G S   +   ++ F   D  HP+ + +Y
Sbjct: 667 RKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 698



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 208/426 (48%), Gaps = 40/426 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +++  N+++ +F   G L  A  VF E   R+ VSW  ++ G  R+G   EAI+   DM 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            +   P + T+  ++S+CA  +   +GR++H ++ + GL   VP+AN++++MY KCG  E
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  ++V S   M+      G +D+A  +F+ +P++ +V WNA+I GY Q   
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 293 SKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-------- 343
             +AL LF  M   + + PD  T    LSAC+ LG +  G  +H +I +           
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 344 -------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
                                    +LNV+  TAL++ Y K G++  A ++F  M  R+ 
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +TA+I G   +G+  +AI  F  MI  G  P+  T   +LS C     +D G++   +
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR 456

Query: 439 -MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            + S+   S  + +   ++ +  RSG    A ++   +    + + W ++  A   HG  
Sbjct: 457 AIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ- 513

Query: 498 SIGERA 503
             GE A
Sbjct: 514 --GEEA 517



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 180/403 (44%), Gaps = 67/403 (16%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D    +  ++ + +  SWN  I G+ + G   +A+ L+ +ML      PD FT   +  
Sbjct: 246 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----- 142
            CA+LG   +G ++  ++L+     +  V NA+I  +   G +  A  + D+S       
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 143 ----------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
                                       R++V+W ++I G+ ++G   EAI LFR M   
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITC 425

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             EP+  T+  ++S CA L  L+ G++IH     S L  +  ++NA++ MY + G    A
Sbjct: 426 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWA 485

Query: 235 EEIFDSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
             +FD +   K  ++ T+MIV  A+ G                               + 
Sbjct: 486 RRMFDQVCWRKETITWTSMIVALAQHG-------------------------------QG 514

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTA 352
           +EA+ LF EM   G++PD +T V  LSACS  G +++G   +  I+ E+     +     
Sbjct: 515 EEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYAC 574

Query: 353 LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
           +VD+ A+ G  ++A +    MP E +++ + +++    +H  A
Sbjct: 575 MVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 159/355 (44%), Gaps = 53/355 (14%)

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK----CGKLESAEEIFDS--MVN 243
           C    +   GR IH    ++GL  +  L N L+  Y +     G L  A  +FD   +  
Sbjct: 36  CQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLAR 95

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + V +  +++  +AK G L  AR +F ++PE+  V W  ++ G  +A R  EA+    +M
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            A G  P   T  + LS+C+   A   G  +H F+ K      V +  ++++MY KCG+ 
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 364 AKALQVFHE-------------------------------MPERNSLTYTAIIGGLALHG 392
             A  VF                                 MP+R+ +++ A+I G   +G
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 393 KALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
               A+  FS M+    M PDE T   +LSAC + G V  G++  A     + L  ++ +
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA-----YILRTEMAY 330

Query: 452 YSCMVDLL----GRSGLLEEAEQLI-RSMPMAADVVVWGALFFACRLHGNVSIGE 501
            S + + L     +SG +E A +++ +SM    +V+ + AL     L G V IG+
Sbjct: 331 NSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL-----LEGYVKIGD 380


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 312/572 (54%), Gaps = 36/572 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SW V + G    G+  EA+     M  +G T P  FT   +   CA      +G ++
Sbjct: 22  DAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFTLTNVLSSCAVTQAGAVGRKV 80

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN----------------- 144
              V+KLG    + V N+V++++  CGD   A  VF+   VR+                 
Sbjct: 81  HSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRM 140

Query: 145 --------------LVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSA 189
                         +VSWN++I G+ ++G   +A++LF  M  E  + PDE T+  ++SA
Sbjct: 141 DLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 200

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--TVV 247
           CA L ++ +G+++H YI  + +     + NAL+  Y K G +E+A  I D  +     V+
Sbjct: 201 CANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 260

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T ++ GY K G ++ AR++F  +  + VV W A+I GY Q  R+ EA+ LF  M   G
Sbjct: 261 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 320

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P++ T    LS C+ L  LD G  IH    +     +  +  A++ MYA+ G+   A 
Sbjct: 321 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWAR 380

Query: 368 QVFHEMPERN-SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           ++F ++  R  ++T+T++I  LA HG+  +A+  F EM+  G+ PD IT++G+LSAC H 
Sbjct: 381 RMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHA 440

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G V+EG++Y+ Q+ +  +++P++ HY+CMVDLL R+GL  EA++ IR MP+  D + WG+
Sbjct: 441 GFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGS 500

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H N  + E AA KLL +DP +SG Y  +AN+Y     W +A ++ K  +E+ V
Sbjct: 501 LLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 560

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            K  G S   +   ++ F   D  HP+ + +Y
Sbjct: 561 RKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 592



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 201/416 (48%), Gaps = 40/416 (9%)

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           +F   G L  A  VF E   R+ VSW  ++ G  R+G   EAI+   DM  +   P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           +  ++S+CA  +   +GR++H ++ + GL   VP+AN++++MY KCG  E+A  +F+ M 
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            ++V S   M+      G +D+A  +F+ +P++ +V WNA+I GY Q     +AL LF  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 303 M-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF------------------ 343
           M   + + PD  T    LSAC+ LG +  G  +H +I +                     
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 344 ---------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
                          +LNV+  TAL++ Y K G++  A ++F  M  R+ + +TA+I G 
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSP 447
             +G+  +AI  F  MI  G  P+  T   +LS C     +D G++   + + S+   S 
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 360

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + +   ++ +  RSG    A ++   +    + + W ++  A   HG    GE A
Sbjct: 361 SVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ---GEEA 411



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 180/403 (44%), Gaps = 67/403 (16%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D    +  ++ + +  SWN  I G+ + G   +A+ L+ +ML      PD FT   +  
Sbjct: 140 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 199

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----- 142
            CA+LG   +G ++  ++L+     +  V NA+I  +   G +  A  + D+S       
Sbjct: 200 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 259

Query: 143 ----------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
                                       R++V+W ++I G+ ++G   EAI LFR M   
Sbjct: 260 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITC 319

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             EP+  T+  ++S CA L  L+ G++IH     S L  +  ++NA++ MY + G    A
Sbjct: 320 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWA 379

Query: 235 EEIFDSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
             +FD +   K  ++ T+MIV  A+ G                               + 
Sbjct: 380 RRMFDQVCWRKETITWTSMIVALAQHG-------------------------------QG 408

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTA 352
           +EA+ LF EM   G++PD +T V  LSACS  G +++G   +  I+ E+     +     
Sbjct: 409 EEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYAC 468

Query: 353 LVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
           +VD+ A+ G  ++A +    MP E +++ + +++    +H  A
Sbjct: 469 MVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA 511


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 303/554 (54%), Gaps = 32/554 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++    Q  N   WNV +  F +   + E+  +++QM +  G  P+ FTYP + + C S+
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQM-QIKGLIPNQFTYPSILRTCTSV 428

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG +I   V+K GF  ++YV + +I ++   G L  A  +       ++VSW +LI
Sbjct: 429 GALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALI 488

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+ +     EA++ F++M    ++ D +     +SACA ++ LN GR+IH     SG +
Sbjct: 489 SGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS 548

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + + NAL+ +Y +CG+++ A   F+ +  K  +S   +I G+A+ G+ + A K+F   
Sbjct: 549 EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVF--- 605

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                           Q  R+K   + F             T    +SA + +  +  G 
Sbjct: 606 ---------------AQMNRAKLEASFF-------------TFGSAVSAAANIANIKQGK 637

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  I K  F+ ++ +  AL+  YAKCG+I  A + F EMPE+N +++ A+I G + HG
Sbjct: 638 QIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHG 697

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A++ F +M  VG MP+ +TF+G+LSAC H GLV +G  YF  MS    L PK  HY
Sbjct: 698 YGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHY 757

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +C+VDL+ R+G L  A + I  MP+  D  +W  L  AC +H NV +GE AA  LLEL+P
Sbjct: 758 ACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEP 817

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           +DS  YVLL+NMY  S  W+   + R+MM  RGV+K PG S IEV   ++ F V D+ HP
Sbjct: 818 EDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHP 877

Query: 573 ELEQIYDCLVQLTR 586
             ++IY+ L +L +
Sbjct: 878 LADKIYEFLAELNK 891



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 224/455 (49%), Gaps = 34/455 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+  N+   +S SW   I GF + G   EA+ L+ +M    G  P  + +  +   C  +
Sbjct: 168 KVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM-HTAGIFPTPYVFSSVLSGCTKI 226

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L  +G ++   V K G  ++ YV NA++ ++    +   A  VF +   ++ VS+NSLI
Sbjct: 227 KLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLI 286

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G  + GF   A+ LF  M+ + ++PD VT+  ++SACA    L  G ++H Y+ ++G++
Sbjct: 287 SGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS 346

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +  AL+D+YV C  +++A E+F +   + VV    M+V + K           D+L
Sbjct: 347 SDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGK----------LDNL 396

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            E +                      +F +MQ  G+ P+  T    L  C+ +GALD G 
Sbjct: 397 SESF---------------------RIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGE 435

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  + K  F  NV + + L+DMYAK G +  A  +   + E + +++TA+I G A H 
Sbjct: 436 QIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHN 495

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+ +F EM+  G+  D I F   +SAC     +++GR+  AQ S +   S  L   
Sbjct: 496 LFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQ-SYVSGYSEDLSIG 554

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + +V L  R G ++EA      +  A D + W  L
Sbjct: 555 NALVSLYARCGRIKEAYLEFEKID-AKDSISWNGL 588



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 220/465 (47%), Gaps = 41/465 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +LD   K+  ++ N +  SW+  I GF+E       +DL+  M+      P   ++  + 
Sbjct: 60  DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEEN-VSPTEISFASVL 118

Query: 87  KVCAS--LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           + C+   +G+R+   +I   ++  G      + N +I ++   G +  A  VFD  C ++
Sbjct: 119 RACSGHRIGIRY-AEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
            VSW ++I+GF ++G+  EAI LF +M    + P       ++S C +++  ++G ++H 
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA 237

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            + + G +L   + NAL+ +Y +     SAE++F  M +K  VS  ++I G A+ GF D 
Sbjct: 238 LVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD- 296

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                                          AL LF +M+   +KPD VT    LSAC+ 
Sbjct: 297 ------------------------------GALELFTKMKRDYLKPDCVTVASLLSACAS 326

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
            GAL  G  +H ++ K   + ++++  AL+D+Y  C +I  A ++F      N + +  +
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           +          ++   F +M   GL+P++ T+  IL  C   G +D G +   Q   + +
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ---VIK 443

Query: 445 LSPKLKHYSC--MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
              +   Y C  ++D+  + G L+ A  ++R++    DVV W AL
Sbjct: 444 TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTAL 487



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 191/411 (46%), Gaps = 34/411 (8%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           TY  L  +C + G      ++ G +LKLGF  +  + N ++ V+ + GDL     VF++ 
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE-DLNLG 199
             R++ SW+ +I+GF+        + LF  M  E V P E++   ++ AC+     +   
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            +IH  I   GL  +  ++N L+ +Y K G + SA ++FD++  K  VS   MI G+++ 
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G+                                +EA+ LF EM   GI P        L
Sbjct: 192 GY-------------------------------EEEAIHLFCEMHTAGIFPTPYVFSSVL 220

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           S C+++   D G  +H  + K   +L   +  ALV +Y++  N   A +VF +M  ++ +
Sbjct: 221 SGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV 280

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           ++ ++I GLA  G +  A+  F++M    L PD +T   +LSAC   G + +G +  + +
Sbjct: 281 SFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYV 340

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
                +S  +     ++DL      ++ A ++  +     +VV+W  +  A
Sbjct: 341 IKA-GISSDMIVEGALLDLYVNCSDIKTAHEMFLT-AQTENVVLWNVMLVA 389



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+  GI  +  T +  L  C   G+L +   +H  I K  F    VL   LVD+Y   G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +   ++VF +MP R+  ++  II G      +   +  FS MI   + P EI+F  +L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 423 CCHGGLVDEGRKYFAQMSSI-----FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           C    +   G +Y  Q+ +         SP + +   ++ L  ++GL+  A ++  ++  
Sbjct: 121 CSGHRI---GIRYAEQIHARIICHGLLCSPIISNP--LIGLYAKNGLIISARKVFDNL-C 174

Query: 478 AADVVVWGAL 487
             D V W A+
Sbjct: 175 TKDSVSWVAM 184


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 318/615 (51%), Gaps = 72/615 (11%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   + FSWNV + G+ + G + EA+DLY +ML   G RPD +T+P + + C  +
Sbjct: 152 RVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW-AGMRPDVYTFPCVLRTCGGI 210

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G E+  HVL+ GF  ++ V NA++ ++  CGD+  A  VFD   V + +SWN++I
Sbjct: 211 PDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMI 270

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G   +      + LF  M    V+P+ +T+  +  A   L ++   +E+H +  + G  
Sbjct: 271 AGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFA 330

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF--- 269
           + V   N+L+ MY   G++  A +IF  M  K  +S T MI GY K GF D A +++   
Sbjct: 331 IDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALM 390

Query: 270 -------DDLP-----------------------------EKYVVPWNAIIGGYVQAK-- 291
                  DD+                               +YVV  NA++  Y ++K  
Sbjct: 391 ELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHI 450

Query: 292 -----------------------------RSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                        RS EAL  F  M    +KP++VT +  LSAC
Sbjct: 451 DKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSAC 509

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +  GAL  G  IH ++ +        +  AL+D+Y KCG  + A   F    E++ +++ 
Sbjct: 510 AATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 569

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            ++ G   HG    A+S F++M+ +G  PDE+TF+ +L AC   G+V +G + F  M+  
Sbjct: 570 IMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F + P LKHY+CMVDLL R G L EA  LI  MP+  D  VWGAL   CR+H +V +GE 
Sbjct: 630 FSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL 689

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  +LEL+P D   +VLL ++Y D+  W +  +VRK M E+G+E+  GCS +EV G+ +
Sbjct: 690 AAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTH 749

Query: 563 EFIVRDKSHPELEQI 577
            F+  D+SHP++++I
Sbjct: 750 AFLTDDESHPQIKEI 764



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/531 (24%), Positives = 226/531 (42%), Gaps = 101/531 (19%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC-----ASLGLRFLG--- 98
           + A+R     G++ +A+     +L +    PD   Y  LF++C        G+R      
Sbjct: 68  SAALRALCSHGQLAQAL----WLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARAD 123

Query: 99  --YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
             +  FG  L+LG        NA++ + V  G++  A  VF +   R++ SWN ++ G+ 
Sbjct: 124 AEHPSFG--LRLG--------NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYG 173

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           + GF  EA+ L+  M    + PD  T   ++  C  + D  +GRE+H ++   G    V 
Sbjct: 174 KVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVD 233

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + NAL+ MY KCG + +A ++FD M     +S   MI G+ +    +   ++F  + E  
Sbjct: 234 VLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENE 293

Query: 277 VVP---------------------------------------WNAIIGGYVQAKRSKEAL 297
           V P                                        N++I  Y    R  +A 
Sbjct: 294 VQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAG 353

Query: 298 ALFHEMQA----------TGIK----PDAVTTVHCLSACSQL-----------------G 326
            +F  M+           +G +    PD    V+ L     +                 G
Sbjct: 354 KIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLG 413

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            LD GI +H   + + F   VV+  AL++MYAK  +I KA++VF  M E++ ++++++I 
Sbjct: 414 RLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIA 473

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G   + ++ +A+ YF  M+G  + P+ +TF+  LSAC   G +  G++  A    + R  
Sbjct: 474 GFCFNHRSFEALYYFRYMLG-HVKPNSVTFIAALSACAATGALRSGKEIHAY---VLRCG 529

Query: 447 PKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              + Y  + ++DL  + G    A     S+    DVV W  +      HG
Sbjct: 530 IGSEGYVPNALLDLYVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFVAHG 579



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++SK++D   ++   +   +  SW+  I GF    +  EA+  ++ ML  G  +P++ T+
Sbjct: 445 AKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML--GHVKPNSVTF 502

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                 CA+ G    G EI  +VL+ G   + YV NA++ ++V CG    A   F     
Sbjct: 503 IAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSE 562

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++VSWN +++GFV  G    A+ LF  M      PDEVT + ++ AC++   +  G E+
Sbjct: 563 KDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWEL 622

Query: 203 -HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            H    +  +   +     ++D+  + GKL  A  + + M  K
Sbjct: 623 FHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK 665



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 108/240 (45%), Gaps = 8/240 (3%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           ++++   PD    V     C    A+D G+      + E+ +  + LG A++ M  + G 
Sbjct: 87  LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGE 146

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I  A +VF +MPER+  ++  ++GG    G   +A+  +  M+  G+ PD  TF  +L  
Sbjct: 147 IWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRT 206

Query: 423 CCHGGLVDE--GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           C  GG+ D   GR+  A +   F    ++   + +V +  + G +  A ++   M +  D
Sbjct: 207 C--GGIPDWRMGREVHAHVLR-FGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAV-TD 262

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
            + W A+      +     G    + +LE + Q +   + + ++   S M  E G  ++M
Sbjct: 263 CISWNAMIAGHFENHECEAGLELFLTMLENEVQPN--LMTITSVTVASGMLSEVGFAKEM 320


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 320/574 (55%), Gaps = 35/574 (6%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S  F  + L+ F A  +   L    ++  ++ + +  +WN  I G    G   +AV 
Sbjct: 139 GLESDVFVCTALVDFYA--KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L  QM +  G  P++ T   +            G  + G+ ++  FD  + V   ++ ++
Sbjct: 197 LIMQM-QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMY 255

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTM 183
             C  L  A  +FD   VRN VSW+++I G+V S   +EA+ LF  M L + ++P  VT+
Sbjct: 256 AKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTL 315

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA+L DL+ GR++H YI + G  L + L N L+ MY KC               
Sbjct: 316 GSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKC--------------- 360

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                           G +D A + FD++  K  V ++AI+ G VQ   +  AL++F  M
Sbjct: 361 ----------------GVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           Q +GI PD  T +  L ACS L AL  G   H ++    F  + ++  AL+DMY+KCG I
Sbjct: 405 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 464

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           + A +VF+ M   + +++ A+I G  +HG  ++A+  F +++ +GL PD+ITF+ +LS+C
Sbjct: 465 SFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSC 524

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLV EGR +F  MS  F + P+++H  CMVD+LGR+GL++EA   IR+MP   DV +
Sbjct: 525 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W AL  ACR+H N+ +GE  + K+  L P+ +G +VLL+N+Y  +  W++A  +R   ++
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 644

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
            G++K PGCS IE+NG+++ F+  D+SH +L QI
Sbjct: 645 WGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/495 (30%), Positives = 234/495 (47%), Gaps = 39/495 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   + NP+   WN  IR +   G    A+DLY  ML + G RP+ +TYP + K C+ L
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML-HLGVRPNKYTYPFVLKACSGL 122

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G EI  H    G + D++V  A++  +  CG L  A  +F     R++V+WN++I
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G    G   +A++L   MQ E + P+  T++G++    + + L  G+ +H Y       
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD 242

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +   L+DMY KC  L  A +IFD M  +  VS + MI                   
Sbjct: 243 NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMI------------------- 283

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDG 331
                       GGYV +   KEAL LF +M     + P  VT    L AC++L  L  G
Sbjct: 284 ------------GGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG 331

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             +H +I K    L+++LG  L+ MYAKCG I  A++ F EM  ++S++++AI+ G   +
Sbjct: 332 RKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQN 391

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLK 450
           G A  A+S F  M   G+ PD  T LG+L AC H   +  G  + +    I R  +    
Sbjct: 392 GNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG--FCSHGYLIVRGFATDTL 449

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH--GNVSIGERAAMKLL 508
             + ++D+  + G +  A ++   M    D+V W A+     +H  G  ++G    +  L
Sbjct: 450 ICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 508

Query: 509 ELDPQDSGIYVLLAN 523
            L P D     LL++
Sbjct: 509 GLKPDDITFICLLSS 523



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 196/419 (46%), Gaps = 42/419 (10%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H LK   + D  V + +  +++SC  + LA  +FDE    +++ WN +I  +  +G
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               AI L+  M    V P++ T   ++ AC+ L  +  G EIH +    GL   V +  
Sbjct: 89  PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCT 148

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+D Y KCG L  A+ +F SM ++ VV+   MI G + +G  D                
Sbjct: 149 ALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD---------------- 192

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                          +A+ L  +MQ  GI P++ T V  L    +  AL  G  +H +  
Sbjct: 193 ---------------DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCV 237

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           + +F+  VV+GT L+DMYAKC  +  A ++F  M  RN ++++A+IGG        +A+ 
Sbjct: 238 RRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALE 297

Query: 400 YFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRK---YFAQMSSIFRLSPKLKHYSCM 455
            F +MI    M P  +T   +L AC     +  GRK   Y  ++ S+  +       + +
Sbjct: 298 LFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLG----NTL 353

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDP 512
           + +  + G++++A +    M    D V + A+   C  +GN ++       M+L  +DP
Sbjct: 354 LSMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 31/235 (13%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC Q + L   ++IH +  ++       + + L  +Y+ C ++  A  +FD + N +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           V+    +I  YA                      WN    G         A+ L+H M  
Sbjct: 74  VILWNQIIRAYA----------------------WNGPFDG---------AIDLYHSMLH 102

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G++P+  T    L ACS L A++DG+ IH   +      +V + TALVD YAKCG + +
Sbjct: 103 LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVE 162

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           A ++F  M  R+ + + A+I G +L+G   DA+    +M   G+ P+  T +G+L
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 4/211 (1%)

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +H L AC Q  +L +   IH+   K   N +  +   L  +Y  C  +  A ++F E+P 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            + + +  II   A +G    AI  +  M+ +G+ P++ T+  +L AC     +++G + 
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +  + +F L   +   + +VD   + G+L EA++L  SM    DVV W A+   C L+G
Sbjct: 132 HSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 496 NVSIGERAAMKLLE--LDPQDSGIYVLLANM 524
                 +  M++ E  + P  S I  +L  +
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTV 220


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 288/541 (53%), Gaps = 34/541 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           N  SW   I G +  G  +EA+  +  M ++  G   D +T+    K CA  G    G E
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGC--DTYTFSSALKACADSGALNYGRE 190

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I    LK GF    +V N +  ++  CG L     +F+    R++VSW ++I   V+ G 
Sbjct: 191 IHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQ 250

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
              A++ FR M+   V P+E T   ++S CA L  +  G ++H ++   GL  ++ +AN+
Sbjct: 251 EENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANS 310

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           +M MY KC +L                               D+A  +F  L  + ++ W
Sbjct: 311 IMAMYSKCWQL-------------------------------DLASTVFQGLSRRDIISW 339

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           + +I GY Q    +EA      M+  G +P+       LS C  +  L+ G  +H  +  
Sbjct: 340 STMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLC 399

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                N ++ +AL++MY+KCG+I +A ++F E    N +++TA+I G A HG + +AI  
Sbjct: 400 VGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDL 459

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F ++  VGL PD +TF+ +L+AC H GLVD G  YF  +S + ++ P   HY CM+DLL 
Sbjct: 460 FKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLC 519

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G L +AE +I+SMP   D VVW  L  ACR+HG+V  G+RAA K+L+LDP  +  ++ 
Sbjct: 520 RAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHIT 579

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           LANMY     W+EA +VRKMM+ +GV K PG S I+    +  F+  D+SHPE E IYD 
Sbjct: 580 LANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDV 639

Query: 581 L 581
           L
Sbjct: 640 L 640



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 225/473 (47%), Gaps = 35/473 (7%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ++ +L+   ++   +   +  SW   I G++      EA+ L+ +M    G   D F   
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 84  LLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
           L  K C  ++ + F G  + G+ +K  F   ++V +A++ +++  G +   C VF E  +
Sbjct: 73  LALKACGLNMSVSF-GESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPL 131

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           RN+VSW ++I G VR+G+ +EA+  F DM +++V  D  T    + ACA    LN GREI
Sbjct: 132 RNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI 191

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    + G T    +AN L  MY KCGKL+    +F+SM  + VVS TT+I+   + G  
Sbjct: 192 HCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIG-- 249

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                        + + A+  F  M+ T + P+  T    +S C
Sbjct: 250 -----------------------------QEENAVKAFRRMRETDVSPNEFTFAAVISGC 280

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + LG ++ G  +H  + +     ++ +  +++ MY+KC  +  A  VF  +  R+ ++++
Sbjct: 281 ATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWS 340

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            +I G A  G   +A  Y S M   G  P+E  F  +LS C +  ++++G++  A +  +
Sbjct: 341 TMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCV 400

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             L       S ++++  + G ++EA ++        ++V W A+      HG
Sbjct: 401 -GLEQNTMVQSALINMYSKCGSIKEASKIFDEAEY-NNIVSWTAMINGYAEHG 451



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 179/374 (47%), Gaps = 48/374 (12%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LDY  ++  ++   +  SW   I   ++ G+   AV  +++M R     P+ FT+  +  
Sbjct: 220 LDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRM-RETDVSPNEFTFAAVIS 278

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA+LG    G ++  HV++ G    + V N+++ ++  C  L LA  VF     R+++S
Sbjct: 279 GCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIIS 338

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W+++I+G+ + G   EA      M+ E   P+E     ++S C  +  L  G+++H ++ 
Sbjct: 339 WSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVL 398

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
             GL     + +AL++MY KCG ++ A +IFD      +VS T MI GYA+ G+      
Sbjct: 399 CVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGY------ 452

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                    S+EA+ LF ++   G++PD+VT +  L+ACS  G 
Sbjct: 453 -------------------------SQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGL 487

Query: 328 LDDGIW-------IHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNS 378
           +D G         +H+    K+++         ++D+  + G +  A  +   MP +R+ 
Sbjct: 488 VDLGFHYFNSLSKVHQICPSKDHYG-------CMIDLLCRAGRLNDAESMIQSMPFQRDD 540

Query: 379 LTYTAIIGGLALHG 392
           + ++ ++    +HG
Sbjct: 541 VVWSTLLRACRIHG 554



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 32/323 (9%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-V 176
           N V+   V  G L  A  +FD+   R+ +SW ++I+G+V      EA+ LF  M +E  +
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
             D   +   + AC     ++ G  +H Y  ++    +V + +AL+DMY+K GK++    
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  + VVS T +I G  + G+                               +KEA
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGY-------------------------------NKEA 153

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           LA F +M    +  D  T    L AC+  GAL+ G  IH    K+ F     +   L  M
Sbjct: 154 LAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATM 213

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCG +   L++F  M +R+ +++T II      G+  +A+  F  M    + P+E TF
Sbjct: 214 YNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTF 273

Query: 417 LGILSACCHGGLVDEGRKYFAQM 439
             ++S C   G ++ G +  A +
Sbjct: 274 AAVISGCATLGRIEWGEQLHAHV 296



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+   LD  + +   +   +  SW+  I G+ + G   EA D Y   +R  G RP+ F +
Sbjct: 316 SKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFD-YLSWMRREGPRPNEFAF 374

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +  VC ++ +   G ++  HVL +G + +  V +A+I+++  CG +  A  +FDE+  
Sbjct: 375 ASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEY 434

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            N+VSW ++ING+   G+ +EAI LF+ +    + PD VT I +++AC+    ++LG   
Sbjct: 435 NNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLG--F 492

Query: 203 HWYISESGLTLTVPLAN---ALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAK 258
           H++ S S +    P  +    ++D+  + G+L  AE +  SM   +  V  +T++     
Sbjct: 493 HYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRI 552

Query: 259 FGFLDIARKIFD---DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            G +D  ++  +    L     V    +   Y    + KEA  +   M++ G+
Sbjct: 553 HGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGV 605



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 123/249 (49%), Gaps = 16/249 (6%)

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTV 316
           K G L+ AR++FD + ++  + W  II GYV    + EAL+LF +M    G+  D     
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             L AC    ++  G  +H +  K +F  +V +G+ALVDMY K G + +   VF EMP R
Sbjct: 73  LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N +++TAII GL   G   +A++YFS+M    +  D  TF   L AC   G ++ GR+  
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIH 192

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLG----RSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            Q      L       S + + L     + G L+   +L  SM    DVV W  +  +  
Sbjct: 193 CQT-----LKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQ-RDVVSWTTIIMS-- 244

Query: 493 LHGNVSIGE 501
              NV IG+
Sbjct: 245 ---NVQIGQ 250


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 319/574 (55%), Gaps = 35/574 (6%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S  F  + L+ F A  +   L    ++  ++ + +  +WN  I G    G   +AV 
Sbjct: 139 GLESDVFVCTALVDFYA--KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L  QM +  G  P++ T   +            G  + G+ ++  FD  + V   ++ ++
Sbjct: 197 LIMQM-QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMY 255

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTM 183
             C  L  A  +FD   VRN VSW+++I G+V S   +EA+ LF  M L + ++P  VT+
Sbjct: 256 AKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTL 315

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA+L DL+ GR++H YI + G  L + L N L+ MY KC               
Sbjct: 316 GSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKC--------------- 360

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                           G +D A + FD +  K  V ++AI+ G VQ   +  AL++F  M
Sbjct: 361 ----------------GVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           Q +GI PD  T +  L ACS L AL  G   H ++    F  + ++  AL+DMY+KCG I
Sbjct: 405 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 464

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           + A +VF+ M   + +++ A+I G  +HG  ++A+  F +++ +GL PD+ITF+ +LS+C
Sbjct: 465 SFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSC 524

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GLV EGR +F  MS  F + P+++H  CMVD+LGR+GL++EA   IR+MP   DV +
Sbjct: 525 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W AL  ACR+H N+ +GE  + K+  L P+ +G +VLL+N+Y  +  W++A  +R   ++
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 644

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
            G++K PGCS IE+NG+++ F+  D+SH +L QI
Sbjct: 645 WGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 233/495 (47%), Gaps = 39/495 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   + NP+   WN  IR +   G    A+DLY  ML + G RP+ +TYP + K C+ L
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML-HLGVRPNKYTYPFVLKACSGL 122

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G EI  H    G + D++V  A++  +  CG L  A  +F     R++V+WN++I
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G    G   +A++L   MQ E + P+  T++G++    + + L  G+ +H Y       
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD 242

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V +   L+DMY KC  L  A +IFD M  +  VS + MI                   
Sbjct: 243 NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMI------------------- 283

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDG 331
                       GGYV +   KEAL LF +M     + P  VT    L AC++L  L  G
Sbjct: 284 ------------GGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG 331

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             +H +I K    L+++LG  L+ MYAKCG I  A++ F  M  ++S++++AI+ G   +
Sbjct: 332 RKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQN 391

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLK 450
           G A  A+S F  M   G+ PD  T LG+L AC H   +  G  + +    I R  +    
Sbjct: 392 GNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG--FCSHGYLIVRGFATDTL 449

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH--GNVSIGERAAMKLL 508
             + ++D+  + G +  A ++   M    D+V W A+     +H  G  ++G    +  L
Sbjct: 450 ICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 508

Query: 509 ELDPQDSGIYVLLAN 523
            L P D     LL++
Sbjct: 509 GLKPDDITFICLLSS 523



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 195/419 (46%), Gaps = 42/419 (10%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H LK   + D  V + +  +++SC  + LA  +FDE    +++ WN +I  +  +G
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               AI L+  M    V P++ T   ++ AC+ L  +  G EIH +    GL   V +  
Sbjct: 89  PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCT 148

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+D Y KCG L  A+ +F SM ++ VV+   MI G + +G  D                
Sbjct: 149 ALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD---------------- 192

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                          +A+ L  +MQ  GI P++ T V  L    +  AL  G  +H +  
Sbjct: 193 ---------------DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCV 237

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           + +F+  VV+GT L+DMYAKC  +  A ++F  M  RN ++++A+IGG        +A+ 
Sbjct: 238 RRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALE 297

Query: 400 YFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRK---YFAQMSSIFRLSPKLKHYSCM 455
            F +MI    M P  +T   +L AC     +  GRK   Y  ++  +  +       + +
Sbjct: 298 LFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLG----NTL 353

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDP 512
           + +  + G++++A +    M    D V + A+   C  +GN ++       M+L  +DP
Sbjct: 354 LSMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 31/235 (13%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC Q + L   ++IH +  ++       + + L  +Y+ C ++  A  +FD + N +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           V+    +I  YA                      WN    G         A+ L+H M  
Sbjct: 74  VILWNQIIRAYA----------------------WNGPFDG---------AIDLYHSMLH 102

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G++P+  T    L ACS L A++DG+ IH   +      +V + TALVD YAKCG + +
Sbjct: 103 LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVE 162

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           A ++F  M  R+ + + A+I G +L+G   DA+    +M   G+ P+  T +G+L
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 4/211 (1%)

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +H L AC Q  +L +   IH+   K   N +  +   L  +Y  C  +  A ++F E+P 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            + + +  II   A +G    AI  +  M+ +G+ P++ T+  +L AC     +++G + 
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +  + +F L   +   + +VD   + G+L EA++L  SM    DVV W A+   C L+G
Sbjct: 132 HSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 496 NVSIGERAAMKLLE--LDPQDSGIYVLLANM 524
                 +  M++ E  + P  S I  +L  +
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTV 220


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 314/577 (54%), Gaps = 49/577 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLGLRFLGY--EIFG 103
           N  I  F        AV +++ +L +  + RPD++++  L      +    + +  ++  
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHC 185

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSC----------------------------------GD 129
            V KLG    + V NA+I +++ C                                  GD
Sbjct: 186 AVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGD 245

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +  A + F+E      V WN++I+G+V+SG   EA  LFR M  +R+ PDE T   ++SA
Sbjct: 246 VHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSA 305

Query: 190 CAQLEDLNLGREIHW--------YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           CA       G+ +H         ++ E+ L    P+ NAL+ +Y K GK+  A +IFDSM
Sbjct: 306 CANAGFFLHGKSVHGQFIRLQPDFVPEAAL----PVNNALVTLYSKSGKIAVATKIFDSM 361

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K VVS  T++ GY + G LD A +IF ++P K  + W  ++ GYV    +++AL LF+
Sbjct: 362 TLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFN 421

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           +M++  +KP   T    ++AC +LGAL  G  +H  + +  F  +   G AL+ MYA+CG
Sbjct: 422 QMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCG 481

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            +  A  VF  MP  +S+++ A+I  L  HG   +A+  F +M+  G+ PD I+FL IL+
Sbjct: 482 AVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILT 541

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLVD+G +YF  M   F +SP   HY+ ++DLLGR+G + EA  LI++MP     
Sbjct: 542 ACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTP 601

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            +W A+   CR++G++ +G  AA +L ++ P+  G Y+LL+N Y  +  W +A +VRK+M
Sbjct: 602 AIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLM 661

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            +RGV+K PGCS IEV   ++ F+V D  HP+  ++Y
Sbjct: 662 RDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVY 698



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 178/387 (45%), Gaps = 75/387 (19%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I G++++G   EA +L+++M+ +    PD FT+  L   CA+ G    G  + G  
Sbjct: 264 WNAMISGYVQSGMCAEAFELFRRMV-SKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQF 322

Query: 106 LKLGFD----VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS--- 158
           ++L  D      + V+NA++ ++   G + +A  +FD   ++++VSWN++++G++ S   
Sbjct: 323 IRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCL 382

Query: 159 ----------------------------GFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
                                       G   +A++LF  M+ E V+P + T  G V+AC
Sbjct: 383 DNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAAC 442

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            +L  L  G+++H ++ + G   +    NAL+ MY +CG ++ A  +F  M N   VS  
Sbjct: 443 GELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVS-- 500

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                        WNA+I    Q    +EAL LF +M A GI P
Sbjct: 501 -----------------------------WNAMISALGQHGHGREALELFDQMVAQGIYP 531

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKA 366
           D ++ +  L+AC+  G +DDG    ++ E    +  +  G      L+D+  + G I +A
Sbjct: 532 DRISFLTILTACNHAGLVDDGF---QYFESMERDFGISPGEDHYARLIDLLGRAGRIGEA 588

Query: 367 LQVFHEMP-ERNSLTYTAIIGGLALHG 392
             +   MP E     + AI+ G  ++G
Sbjct: 589 RDLIKTMPFEPTPAIWEAILSGCRING 615



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 205/437 (46%), Gaps = 52/437 (11%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDM--QL 173
            +++  +   G L  +   FD   V  R+ V  N++I+ F R+     A+ +FR +    
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGR--EIHWYISESGLTLTVPLANALMDMYVKC--- 228
           + + PD+ +   ++SA  Q+ DL +    ++H  + + G    + ++NAL+ +Y+KC   
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G    A ++ D M  K  ++ TT++VG+ + G +  AR  F+++  ++ V WNA+I GYV
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIE-KENFNLN 346
           Q+    EA  LF  M +  I PD  T    LSAC+  G    G  +H +FI  + +F   
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 347 VVL--GTALVDMYAKCGNIA-------------------------------KALQVFHEM 373
             L    ALV +Y+K G IA                                A ++F EM
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEM 392

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           P ++ L++  ++ G    G A DA+  F++M    + P + T+ G ++AC   G +  G+
Sbjct: 393 PYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGK 452

Query: 434 KYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           +  A +    F  S      + ++ +  R G +++A  +   MP   D V W A+  A  
Sbjct: 453 QLHAHLVQCGFEASNSAG--NALLTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISALG 509

Query: 493 LHGNVSIGERAAMKLLE 509
            HG+     R A++L +
Sbjct: 510 QHGH----GREALELFD 522



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 156/375 (41%), Gaps = 59/375 (15%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP--EKYVV 278
           L+ +Y     L +   +F +  +   V+ T+++  YA  G L  +   FD +P   +  V
Sbjct: 66  LLHLYTLSPDLATPAVLFRA--DPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTV 123

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQAT--GIKPDAVTTVHCLSACSQLG--ALDDGIWI 334
             NA+I  + +A  +  A+++F  + A+   ++PD  +    LSA  Q+   A+     +
Sbjct: 124 LHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQL 183

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKC---GNIAKALQVFHEMPERNSLTYT--------- 382
           H  + K      + +  AL+ +Y KC   G    A +V  EMPE++ LT+T         
Sbjct: 184 HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRK 243

Query: 383 ----------------------AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
                                 A+I G    G   +A   F  M+   + PDE TF  +L
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPK------LKHYSCMVDLLGRSGLLEEAEQLIRS 474
           SAC + G    G+    Q     RL P       L   + +V L  +SG +  A ++  S
Sbjct: 304 SACANAGFFLHGKSVHGQ---FIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDS 360

Query: 475 MPMAADVVVWGALFFACRLHGNVSIG--ERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           M +  DVV W  +     L G +  G  + AA    E+  +    ++++ + Y    + E
Sbjct: 361 MTL-KDVVSWNTI-----LSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAE 414

Query: 533 EAGKVRKMMEERGVE 547
           +A K+   M    V+
Sbjct: 415 DALKLFNQMRSEDVK 429


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/548 (35%), Positives = 302/548 (55%), Gaps = 33/548 (6%)

Query: 35  LFNVQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +FN    +S   +N  I G +   K  EA+  + Q+L   G   +  +    F  CAS+ 
Sbjct: 334 IFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFF-QLLLKSGLGFNEISLSGAFSACASIK 392

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G ++    +K     ++ V N+++ ++  C  L  AC +FDE   R+ VSWN++I 
Sbjct: 393 GDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIA 452

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
              ++G   E + LF  M   R+EPD+ T   ++ AC+  + LN G EIH  I +SGL L
Sbjct: 453 AHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGL 512

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              +  AL+DMY KCG +E A                               +KI D + 
Sbjct: 513 DSFVGGALIDMYCKCGMIEEA-------------------------------KKIHDRIE 541

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           ++ +V WNAII G+   K S++A + F+EM    +KPD  T    L AC+ L ++  G  
Sbjct: 542 QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQ 601

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH  I K   + +V + + LVDMY+KCGN+  +  VF + P ++ +T+ A+I G A HG 
Sbjct: 602 IHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGL 661

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +A+ YF  M    + P+  TF+ IL AC H G +D+G  YF  M + + L P+++HYS
Sbjct: 662 GEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYS 721

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CM+D++GRSG + EA +LI+ MP  AD V+W  L   C++HGN+ I E+A   +L+L+P+
Sbjct: 722 CMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPE 781

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           DS   +LL+N+Y D+ MW +  ++RKMM    ++K PGCS IEV   ++ F+V +K+HP 
Sbjct: 782 DSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPR 841

Query: 574 LEQIYDCL 581
            E+IY  L
Sbjct: 842 YEEIYKIL 849



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 230/482 (47%), Gaps = 39/482 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++ K LD   KI   +   N   W+  I G ++  +    ++L+K+M +  G       Y
Sbjct: 222 AKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEM-QKVGIGVSQSIY 280

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F+ CA L    +G ++  H LK  F  D+ V  A + ++  CG L  A  +F+    
Sbjct: 281 ASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPK 340

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE-DLNLGRE 201
            +L  +N++I G VR+    EA++ F+ +    +  +E+++ G  SACA ++ DL+ GR+
Sbjct: 341 HSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD-GRQ 399

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H    +S L   + +AN+++DMY KC  L  A  +FD M  +  VS             
Sbjct: 400 LHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVS------------- 446

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
                             WNA+I  + Q    +E L LF  M    ++PD  T    L A
Sbjct: 447 ------------------WNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKA 488

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           CS   AL+ G+ IH  I K    L+  +G AL+DMY KCG I +A ++   + ++  +++
Sbjct: 489 CSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSW 548

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            AII G  L   + DA S+F EM+ + + PD  T+  +L AC +   V  G++   Q+  
Sbjct: 549 NAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIK 608

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           +  L   +   S +VD+  + G ++++  +    P   D V W A+      HG   +GE
Sbjct: 609 L-ELHSDVYITSTLVDMYSKCGNMQDSALVFEKAP-NKDFVTWNAMICGYAQHG---LGE 663

Query: 502 RA 503
            A
Sbjct: 664 EA 665



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 236/501 (47%), Gaps = 48/501 (9%)

Query: 15  RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG 74
           R+  FC IS  +     TK+   ++  +      +    L+ GK   A     +M+ +G 
Sbjct: 22  RIFTFCTISTLQQNQ--TKLPTKIRTFSHIIQECSDYNSLKPGKQAHA-----RMIVSGF 74

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
             PD +    L K+          Y++F  + +     D+  +N +I  +   G++ LA 
Sbjct: 75  I-PDVYISNCLMKMYLRCSHLNYAYKVFEKMSQR----DVISYNTMISGYADAGEMNLAN 129

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQL 193
             F ++  R++VSWNS+++GF+++G  R++I +F DM + E V  D+ T   ++ AC+ L
Sbjct: 130 EFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVL 189

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           ED  LG ++H  I   G    V   +AL+DMY KC +                       
Sbjct: 190 EDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKR----------------------- 226

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                   LD + KIF ++P K  V W+AII G VQ       L LF EMQ  GI     
Sbjct: 227 --------LDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
                  +C+ L AL  G  +H    K +F  ++ +GTA +DMYAKCG++A A ++F+ +
Sbjct: 279 IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSL 338

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           P+ +   Y AII G   + K  +A+ +F  ++  GL  +EI+  G  SAC       +GR
Sbjct: 339 PKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGR 398

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +  + +S    L   +   + ++D+ G+   L EA  +   M    D V W A+  A   
Sbjct: 399 QLHS-LSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQ 456

Query: 494 HGN--VSIGERAAMKLLELDP 512
           +GN   ++   A+M  L ++P
Sbjct: 457 NGNEEETLNLFASMLRLRMEP 477



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 227/467 (48%), Gaps = 37/467 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           +++  ++   +  ++    +  SWN  + GFL+ G+ R+++D++  M R+     D  T+
Sbjct: 120 ADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTF 179

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
            ++ K C+ L    LG ++ G ++++GF  D+   +A++ ++  C  L  +  +F E  V
Sbjct: 180 AVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPV 239

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +N V W+++I G V++      + LF++MQ   +   +     +  +CA L  L +G ++
Sbjct: 240 KNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQL 299

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +  +      + +  A +DMY KCG L  A+                           
Sbjct: 300 HAHALKCDFGSDITVGTATLDMYAKCGSLADAQ--------------------------- 332

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
               +IF+ LP+  +  +NAII G V+ ++  EAL  F  +  +G+  + ++     SAC
Sbjct: 333 ----RIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSAC 388

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + +    DG  +H    K     N+ +  +++DMY KC  +++A  +F EM  R+++++ 
Sbjct: 389 ASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWN 448

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I     +G   + ++ F+ M+ + + PD+ T+  +L AC     ++ G +     + I
Sbjct: 449 AVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIH---NRI 505

Query: 443 FRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +    L  +    ++D+  + G++EEA+++   +     +V W A+
Sbjct: 506 IKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQT-MVSWNAI 551


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 307/580 (52%), Gaps = 41/580 (7%)

Query: 9   HGFAPSRLIAFCAISESKNLDYCTKI--------LFN-VQNPNSFSWNVAIRGFLETGKM 59
           HG A     A+ +I  +  LD   K         +FN + NP   S+N  I G+    + 
Sbjct: 262 HGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQG 321

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +A++++ Q L+      D  +       C+ +     G ++ G  +K G   ++ V N 
Sbjct: 322 LKALEIF-QSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANT 380

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ ++  CG L  AC +FD+   R+ VSWN++I    ++    + + LF  M    +EPD
Sbjct: 381 ILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPD 440

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           + T   +V ACA  + LN G EIH  I +SG+ L   + +AL+DMY KCG L  AE    
Sbjct: 441 DFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAE---- 496

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                      KI D L EK  V WN+II G+   K+S+ A   
Sbjct: 497 ---------------------------KIHDRLEEKTTVSWNSIISGFSSQKQSENAQRY 529

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M   G+ PD  T    L  C+ +  ++ G  IH  I K N + +V + + LVDMY+K
Sbjct: 530 FSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSK 589

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CGN+  +  +F + P+R+ +T++A+I   A HG    AI  F EM  + + P+   F+ +
Sbjct: 590 CGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISV 649

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H G VD+G  YF  M S + L P ++HYSCMVDLLGRS  + EA +LI SM   A
Sbjct: 650 LRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEA 709

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D V+W  L   C++ GNV + E+A   LL+LDPQDS  YVLLAN+Y +  MW E  K+R 
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRS 769

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
           +M+   ++K PGCS IEV   ++ F+V DK+HP  E+IY+
Sbjct: 770 IMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYE 809



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/540 (23%), Positives = 239/540 (44%), Gaps = 70/540 (12%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I   F P+  +A C +    +S N++Y  K+   + + +  SWN  I G+ E G M  A
Sbjct: 32  MIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFA 91

Query: 63  VDLYKQM---------------LRNGGTRP---------------DNFTYPLLFKVCASL 92
             L+  M               L NG  R                D  T+ ++ K C+ +
Sbjct: 92  QSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGI 151

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               LG ++    +++GF+ D+   +A++ ++  C  L  A  +F E   RNLV W+++I
Sbjct: 152 EDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVI 211

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+V++    E ++LF+DM    +   + T   +  +CA L    LG ++H +  +S   
Sbjct: 212 AGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFA 271

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  A +DMY KC ++  A ++F+++ N    S   +IVGYA+              
Sbjct: 272 YDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYAR-------------- 317

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                              +  +AL +F  +Q T +  D ++    L+ACS +    +GI
Sbjct: 318 -----------------QDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGI 360

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H    K     N+ +   ++DMY KCG + +A  +F +M  R+++++ AII     + 
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNE 420

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           + +  +S F  M+   + PD+ T+  ++ AC     ++ G +   +   I +    L  +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGR---IVKSGMGLDWF 477

Query: 453 --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
             S +VD+ G+ G+L EAE+ I         V W ++             +R   ++LE+
Sbjct: 478 VGSALVDMYGKCGMLMEAEK-IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM 536



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 137/242 (56%)

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++  C+ L+ LN G++ H  +  +    T+ +AN L+  Y K   +  A ++FD M
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
            ++ V+S  TMI GYA+ G +  A+ +FD +PE+ VV WN+++  Y+    +++++ +F 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
            M++  I  D  T    L ACS +     G+ +H    +  F  +VV G+ALVDMY+KC 
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            +  A ++F EMPERN + ++A+I G   + + ++ +  F +M+ VG+   + T+  +  
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 422 AC 423
           +C
Sbjct: 248 SC 249



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 189/445 (42%), Gaps = 70/445 (15%)

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
           FT+  + + C++L     G +    ++   F   +YV N ++  +    ++  A  VFD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 140 SCVRNLVSWNSLING-------------------------------FVRSGFPREAIRLF 168
              R+++SWN++I G                               ++ +G  R++I +F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
             M+  ++  D  T   ++ AC+ +ED  LG ++H    + G    V   +AL+DMY KC
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
            KL+ A  IF  M  + +V  + +I                                GYV
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVI-------------------------------AGYV 215

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           Q  R  E L LF +M   G+     T      +C+ L A   G  +H    K +F  + +
Sbjct: 216 QNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSI 275

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +GTA +DMYAKC  ++ A +VF+ +P     +Y AII G A   + L A+  F  +    
Sbjct: 276 IGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTY 335

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSPKLKHYSCMVDLLGRSGLL 465
           L  DEI+  G L+AC     V +G     Q+  +     L   +   + ++D+ G+ G L
Sbjct: 336 LSFDEISLSGALTACS----VIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGAL 391

Query: 466 EEAEQLIRSMPMAADVVVWGALFFA 490
            EA  +   M    D V W A+  A
Sbjct: 392 VEACTIFDDME-RRDAVSWNAIIAA 415


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/549 (36%), Positives = 302/549 (55%), Gaps = 45/549 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           + F WN AIR     G+ R A+ LY   +R+ G RPD +T+P + K C        G  +
Sbjct: 78  DPFPWNTAIR-LHAPGRPRAAL-LYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSG 159
               ++ G   D++  NA+I  +    D      VFDE+    R+LVSWNS++ G+V  G
Sbjct: 136 HAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGCG 195

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A  LF +M                    Q +  + G                    
Sbjct: 196 EMGLAQELFDEMP-------------------QRDAFSWG-------------------- 216

Query: 220 ALMDMYVKCGK--LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           AL+D Y K G   ++ A E+FD M  + +V   +MI GYA+ G +D AR +F+++PE+ V
Sbjct: 217 ALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNV 276

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W+ +I G+V+   +KEAL  F  M   GI+PD V  V  +SAC+QLGAL+ G W+H +
Sbjct: 277 ISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSY 336

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           +EK+    +VV+ TAL+DMY KCG +  A+ +F  MPER+ +T+  +I GL  HG  LDA
Sbjct: 337 LEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDA 396

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F  M    +  D+++ L +L+AC H GLV EG + F +M   F + PK++HY  +VD
Sbjct: 397 VMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVD 456

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L++A   I +MPM     +WG+L  ACR H  V + E +  +L  L   DSG+
Sbjct: 457 LLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLANLGADDSGV 516

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YVLL+N+Y D  MW +  ++RK+M + G+ K  G S IEV+G ++EF+    SH   ++I
Sbjct: 517 YVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNGGGSHLCTDEI 576

Query: 578 YDCLVQLTR 586
           Y  L  L++
Sbjct: 577 YLMLWNLSK 585



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 2/216 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D    +   +   N  SW++ I G +  G+ +EA++ ++ MLR  G RPD        
Sbjct: 260 RMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRC-GIRPDRVAAVGAV 318

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG    G  +  ++ K     D+ V  A+I +++ CG + LA  +F+    R++V
Sbjct: 319 SACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVV 378

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWY 205
           +WN +I G    G+  +A+ LF  M+ ERV  D+++++ M++AC     ++ G EI H  
Sbjct: 379 TWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRM 438

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             + G+   V    AL+D+  + G+L+ A    ++M
Sbjct: 439 KKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETM 474



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 121/336 (36%), Gaps = 103/336 (30%)

Query: 260 GFLDIARKIFDDLPEKYV---VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           G   +A  +F  LPE       PWN  I  +    R + AL  F  M++ G++PDA T  
Sbjct: 59  GAAPLADAVFARLPEPAARDPFPWNTAIRLHAPG-RPRAALLYFARMRSCGVRPDAYTFP 117

Query: 317 HCLSACSQLGALDDGIWIH-----RFIEKENFNLNVVLG--------------------- 350
             L AC        G+ +H     R +  + F +N ++                      
Sbjct: 118 AVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGV 177

Query: 351 -------TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI------------------- 384
                   ++V  Y  CG +  A ++F EMP+R++ ++ A+                   
Sbjct: 178 SRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELF 237

Query: 385 --------------IGGLALHGKALDAISYFSE--------------------------- 403
                         I G A HG+  +A S F E                           
Sbjct: 238 DQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALE 297

Query: 404 ----MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
               M+  G+ PD +  +G +SAC   G +++GR   + +     LS  +   + ++D+ 
Sbjct: 298 HFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQ-TALIDMY 356

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            + G ++ A  +  SMP  + VV W  +      HG
Sbjct: 357 MKCGRMDLAMLIFESMPERS-VVTWNVMIVGLGTHG 391


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 323/585 (55%), Gaps = 63/585 (10%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           + Y  ++   + +P+       I  +       EA+  +  M +N   R   FT P +FK
Sbjct: 46  IQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNN-VRIVCFTIPPIFK 104

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----- 142
            CASL    +G ++   V++ GF   ++  NA+I+ +    DLG A  +FD   V     
Sbjct: 105 SCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIA 164

Query: 143 --------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                                     R++VSWN++I+ + ++G   +   +F+ MQ E  
Sbjct: 165 YNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMC 224

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EP+E+T+  ++S CA+L DL +G  I        L   + ++ A+++MYVKCG +     
Sbjct: 225 EPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAV----- 279

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
                                     D  R +FD +  + VV W+A+I GY Q  RS EA
Sbjct: 280 --------------------------DDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEA 313

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L LF  M++  IKP+ VT V  LSAC+QLG+++ G  I  ++E      NV + +AL+ M
Sbjct: 314 LELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGM 373

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y+KCGNI KA Q+F ++P+R+++T+ ++I GLA++G A DAI+ ++ M  + + P+ ITF
Sbjct: 374 YSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITF 433

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           +G+++AC H G V+ G ++F  M S   +SP ++H++C+VDL  RSG L +A + I  M 
Sbjct: 434 VGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRME 493

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  +VV+WG L  A R+H NV + E A  KLLEL+P +SG YV+L+N+Y  +  W+EA K
Sbjct: 494 VEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALK 553

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           VRK+M+++ V+K    S +EV   +++F+V D SHP  +++Y  +
Sbjct: 554 VRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTI 598



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GLIS+ +  S L+     S+  N+    +I   +   ++ +WN  I G    G   +A+ 
Sbjct: 359 GLISNVYVASALLGM--YSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIA 416

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           LY +M +    +P+N T+  L   C   G   LG E F
Sbjct: 417 LYNRM-KEIEVKPNNITFVGLMTACTHAGHVELGLEFF 453


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 316/563 (56%), Gaps = 33/563 (5%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+    D  +K+   +   ++ +WN  I G++++G M E++  + +M+ + G  PD  T+
Sbjct: 285 SKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMI-SSGVLPDAITF 343

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             L    +         +I  ++++    +D+++ +A+I  +  C  + +A N+F +   
Sbjct: 344 SSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNS 403

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            ++V + ++I+G++ +G   +++ +FR +   ++ P+E+T++ ++     L  L LGRE+
Sbjct: 404 VDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGREL 463

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +I + G      +  A++DMY KCG++                               
Sbjct: 464 HGFIIKKGFDNRCNIGCAVIDMYAKCGRM------------------------------- 492

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           ++A +IF+ L ++ +V WN++I    Q+     A+ +F +M  +GI  D V+    LSAC
Sbjct: 493 NLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSAC 552

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + L +   G  IH F+ K +   +V   + L+DMYAKCGN+  A+ VF  M E+N +++ 
Sbjct: 553 ANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWN 612

Query: 383 AIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           +II     HGK  D++  F EM+   G+ PD+ITFL I+S+CCH G VDEG ++F  M+ 
Sbjct: 613 SIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTE 672

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + + P+ +HY+C+VDL GR+G L EA + ++SMP   D  VWG L  ACRLH NV + E
Sbjct: 673 DYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAE 732

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
            A+ KL++LDP +SG YVL++N + ++  WE   KVR +M+ER V+K PG S IE+N   
Sbjct: 733 VASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRT 792

Query: 562 YEFIVRDKSHPELEQIYDCLVQL 584
           + F+  D +HPE   IY  L  L
Sbjct: 793 HLFVSGDVNHPESSHIYSLLNSL 815



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 219/466 (46%), Gaps = 60/466 (12%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH- 104
           WN  I  F+  G + +A+  Y +ML   G  PD  T+P L K C +L   F G +     
Sbjct: 106 WNSIISSFVRNGLLNQALAFYFKML-CFGVSPDVSTFPCLVKACVALK-NFKGIDFLSDT 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V  LG D + +V +++I  ++  G + +   +FD    ++ V WN ++NG+ + G     
Sbjct: 164 VSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSV 223

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I+ F  M+++++ P+ VT   ++S CA    ++LG ++H  +  SG+     + N+L+ M
Sbjct: 224 IKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSM 283

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG+ + A ++F  M     V+   MI GY + G ++                     
Sbjct: 284 YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLME--------------------- 322

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                     E+L  F+EM ++G+ PDA+T    L + S+   L+    IH +I + + +
Sbjct: 323 ----------ESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSIS 372

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L++ L +AL+D Y KC  ++ A  +F +    + + +TA+I G   +G  +D++  F  +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWL 432

Query: 405 IGVGLMPDEITFLGILSAC-----------CHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
           + V + P+EIT + IL               HG ++ +G   F    +I           
Sbjct: 433 VKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKG---FDNRCNI----------G 479

Query: 454 C-MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           C ++D+  + G +  A ++   +    D+V W ++   C    N S
Sbjct: 480 CAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPS 524



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 157/341 (46%), Gaps = 33/341 (9%)

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
           LL + C++  L   G ++   ++      D Y    ++ ++  CG       +F    +R
Sbjct: 40  LLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR 99

Query: 144 --NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
             ++  WNS+I+ FVR+G   +A+  +  M    V PD  T   +V AC  L++      
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF 159

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +   +S  G+     +A++L+  Y++ GK++   ++FD ++ K  V    M+ GYAK G 
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGA 219

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           LD                  ++I G             F  M+   I P+AVT    LS 
Sbjct: 220 LD------------------SVIKG-------------FSVMRMDQISPNAVTFDCVLSV 248

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+    +D G+ +H  +     +    +  +L+ MY+KCG    A ++F  M   +++T+
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTW 308

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
             +I G    G   +++++F EMI  G++PD ITF  +L +
Sbjct: 309 NCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 46/332 (13%)

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           LE   P  +++  ++ AC+    L  G+++H ++  + ++        ++ MY  CG   
Sbjct: 30  LEETIPRRLSL--LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFS 87

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
              ++F  +                             DL    + PWN+II  +V+   
Sbjct: 88  DCGKMFYRL-----------------------------DLRRSSIRPWNSIISSFVRNGL 118

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCL-SACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             +ALA + +M   G+ PD V+T  CL  AC  L       ++   +     + N  + +
Sbjct: 119 LNQALAFYFKMLCFGVSPD-VSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVAS 177

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           +L+  Y + G I    ++F  + +++ + +  ++ G A  G     I  FS M    + P
Sbjct: 178 SLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISP 237

Query: 412 DEITFLGILSACCHGGLVDEGRKY--FAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEA 468
           + +TF  +LS C    L+D G +      +S + F  S K    + ++ +  + G  ++A
Sbjct: 238 NAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK----NSLLSMYSKCGRFDDA 293

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            +L R M   AD V W      C + G V  G
Sbjct: 294 SKLFRMMS-RADTVTWN-----CMISGYVQSG 319


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/483 (39%), Positives = 285/483 (59%), Gaps = 7/483 (1%)

Query: 100 EIFGHVLKLGF--DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           E+   VL+ G     D  V   +   + + G L L+  +   +     + + S I+    
Sbjct: 307 ELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSS 366

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
            G    A+ L  DM  + + P   T+   + AC     L+ GR +H Y  +  L     +
Sbjct: 367 RGHRLPALALLSDMLAQGLLPTAHTLSASLPAC---RGLSPGRALHGYAFKLALAGDSYV 423

Query: 218 ANALMDMYVKCGKLESAEEIFDSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           A AL+ MY + G   +A  +FD M+ +  VVS T M+  YA  G LD AR +FD LP K 
Sbjct: 424 ATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKD 483

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V WNA+I GY Q  R  EAL LF  M  +G++PD VT V  LSA +QLG ++ G W+H 
Sbjct: 484 FVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHS 543

Query: 337 FIE-KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           +++      L+V +GTAL+DMY KCG++  A+ VFH + +++ + + A+I G A+HG + 
Sbjct: 544 YVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSR 603

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            A+  F +    GL P +ITF+G+L+AC H G+V+EGR++F  M   + + PK++HY CM
Sbjct: 604 KALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCM 663

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLLGR+GL++EA  L++SM +  D V+W +L  ACRLH N+S+G++ A  L+     +S
Sbjct: 664 VDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANS 723

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
           G+Y+LL+N+Y     W E  +VR MM+  G++K PGCSSIE++  +YEF+  D SHP  +
Sbjct: 724 GMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTD 783

Query: 576 QIY 578
           +IY
Sbjct: 784 EIY 786



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 185/426 (43%), Gaps = 76/426 (17%)

Query: 4   TGLISHGFAPSRLIAFC---AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           TGL+    A  R +AF    A + S  LD    +L   ++P +  +  AI      G   
Sbjct: 315 TGLLD---ATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRL 371

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ L   ML  G   P   T       C  L     G  + G+  KL    D YV  A+
Sbjct: 372 PALALLSDMLAQG-LLPTAHTLSASLPACRGLSP---GRALHGYAFKLALAGDSYVATAL 427

Query: 121 IHVFVSCGDLGLACNVFDE--------------SC------------------VRNLVSW 148
           + ++   GD   A  +FD+              +C                   ++ V W
Sbjct: 428 LGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCW 487

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+ + G P EA+RLFR M    VEPDEVT++ ++SA AQL  +  G+ +H Y+  
Sbjct: 488 NAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKN 547

Query: 209 S-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           S  + L+V +  AL+DMY KCG L  A ++F  + +K +V    MI GYA  G       
Sbjct: 548 SRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHG------- 600

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                    S++AL +F + +  G+ P  +T +  L+ACS  G 
Sbjct: 601 ------------------------DSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGM 636

Query: 328 LDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           +++G    + +E+E   +  +     +VD+  + G I +A  +   M    +++ + +++
Sbjct: 637 VEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLL 696

Query: 386 GGLALH 391
               LH
Sbjct: 697 AACRLH 702


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 174/434 (40%), Positives = 266/434 (61%), Gaps = 5/434 (1%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE----IHW 204
           ++LI     SG P+ A+ L+  +    + P   T+  ++ + A    +   R     +H 
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116

Query: 205 YISESGLTLTVPLANALMDMYVKC-GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           +    GL   + + NAL+ ++    G+L  A  +  +       +  T+I  +A+ G + 
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVA 176

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            AR +FD++PE+  V W+A++ GYVQA   +EAL +F +MQA G++PD    V  L+AC+
Sbjct: 177 DARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACA 236

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           QLGAL+ G W+H +++  N  + V LGTALVDMYAKCG +   ++VF  M ++N L +T 
Sbjct: 237 QLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTT 296

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GLA+HG+  D+++ FS+M   G+ PD+I F+G L AC H GLVD+GR+ F  M + +
Sbjct: 297 MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNY 356

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + PK++HY CMVDLL R+GLL EA  ++  MPM  D ++WGAL   CR H NV + E  
Sbjct: 357 GIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 416

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
               +EL+P  SG YVLL N+Y  S     A ++R +M E+GVEKTPGCS++E+ G++++
Sbjct: 417 IKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQ 476

Query: 564 FIVRDKSHPELEQI 577
           FIV D SHP ++ I
Sbjct: 477 FIVGDLSHPRIKDI 490



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 182/380 (47%), Gaps = 70/380 (18%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA----SLGLRFLGYEIFGHV 105
           IR    +G+ + A+ LY  ++R  G  P   T P L K  A      G R L   +  H 
Sbjct: 60  IRAHASSGRPQAALPLYAHLIR-AGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAHA 118

Query: 106 LKLGFDVDMYVHNAVIHVFVS--------------------------------CGDLGLA 133
           ++LG    + V+NA+I V                                    G +  A
Sbjct: 119 VRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADA 178

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++FDE   RN VSW++++NG+V++G  REA+ +F  MQ + V PD+  ++G+++ACAQL
Sbjct: 179 RSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQL 238

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G+ +H Y+  + + +TV L  AL+DMY KCG+++   E+F+ M +K V++ TTMI
Sbjct: 239 GALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMI 298

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G A  G                               R  ++L LF +M+++G+KPD +
Sbjct: 299 KGLAMHG-------------------------------RGSDSLTLFSQMESSGVKPDDI 327

Query: 314 TTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
             +  L AC+  G +D G  + +  +        +     +VD+ A+ G +++A  +  +
Sbjct: 328 AFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEK 387

Query: 373 MPER-NSLTYTAIIGGLALH 391
           MP + ++L + A++ G   H
Sbjct: 388 MPMKPDALIWGALMAGCRFH 407



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SW+  + G+++ G  REA+ ++ QM +  G RPD+     +   CA LG    G  +
Sbjct: 189 NAVSWSAMVNGYVQAGDGREALGVFSQM-QAQGVRPDDTVLVGVLAACAQLGALEQGKWV 247

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G++      + +++  A++ ++  CG++ L   VF+    +N+++W ++I G    G  
Sbjct: 248 HGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRG 307

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANA 220
            +++ LF  M+   V+PD++  IG + AC     ++ GRE+ +  ++  G+   +     
Sbjct: 308 SDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGC 367

Query: 221 LMDMYVKCGKLESAEEIFDSMVNK 244
           ++D+  + G L  A ++ + M  K
Sbjct: 368 MVDLLARNGLLSEARDMVEKMPMK 391


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 308/562 (54%), Gaps = 32/562 (5%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+ + L    K+       +  SWN  I G+++ G M EA  L++ M+ + G +PD+ T+
Sbjct: 205 SKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMI-SAGIKPDSITF 263

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                    L       EI G++++    +D+++ +A+I ++  C D+ +A  +  +S  
Sbjct: 264 ASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSS 323

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            + V   ++I+G+V +G  +EA+  FR +  ER++P  VT   +  A A L  LNLG+E+
Sbjct: 324 FDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKEL 383

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  I ++ L     + +A++DMY KCG+L                               
Sbjct: 384 HGSIIKTKLDEKCHVGSAILDMYAKCGRL------------------------------- 412

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           D+A ++F+ + EK  + WN++I    Q  R  EA+ LF +M   G + D V+    LSAC
Sbjct: 413 DLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSAC 472

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + L AL  G  IH  + K     ++   ++L+DMYAKCGN+  + +VF  M ERN +++ 
Sbjct: 473 ANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWN 532

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           +II     HG   + ++ F EM+  G+ PD +TFLGI+SAC H G VDEG +Y+  M+  
Sbjct: 533 SIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEE 592

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + +  +++HY+C+ D+ GR+G L+EA + I SMP   D  VWG L  AC +HGNV + E 
Sbjct: 593 YGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEV 652

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           A+  L +LDP +SG YVLLAN+   +  W +  KVR +M+ERGV K PG S IEVN   +
Sbjct: 653 ASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATH 712

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
            F+  D SHP   QIY  L  L
Sbjct: 713 MFVAADGSHPLTAQIYSVLDSL 734



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 241/497 (48%), Gaps = 36/497 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL    F  S LI   A  E+ +L     +  N+   +S  WNV + G+++ G   
Sbjct: 84  VNLMGLKEDVFVGSSLIKLYA--ENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSG 141

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ ++ +M R+   +P++ T+  +  VCAS  +  LG ++ G  +  G ++D  V N +
Sbjct: 142 NAIKIFLEM-RHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTL 200

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++  C  L  A  +FD S   +LVSWN +I+G+V++G   EA  LFR M    ++PD 
Sbjct: 201 LAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDS 260

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T    +    +L  L   +EIH YI    + L V L +AL+D+Y KC  +E A++I   
Sbjct: 261 ITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQ 320

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
             +   V CTTMI GY   G                               ++KEAL  F
Sbjct: 321 SSSFDTVVCTTMISGYVLNG-------------------------------KNKEALEAF 349

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
             +    +KP +VT      A + L AL+ G  +H  I K   +    +G+A++DMYAKC
Sbjct: 350 RWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKC 409

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G +  A +VF+ + E++++ + ++I   + +G+  +AI+ F +M   G   D ++  G L
Sbjct: 410 GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGAL 469

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC +   +  G++    M     L   L   S ++D+  + G L  + ++   M    +
Sbjct: 470 SACANLPALHYGKEIHGLMIK-GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRM-QERN 527

Query: 481 VVVWGALFFACRLHGNV 497
            V W ++  A   HG++
Sbjct: 528 EVSWNSIISAYGNHGDL 544



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 230/475 (48%), Gaps = 40/475 (8%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           ++ ++KNL       + +Q   + +WN  IRGF   G+   A+  Y +ML   G  PD +
Sbjct: 7   SLKDAKNL------FYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKML-GAGVSPDKY 59

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+P + K C  L    +G  +   V  +G   D++V +++I ++   G L  A  +FD  
Sbjct: 60  TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             ++ V WN ++NG+V++G    AI++F +M+   ++P+ VT   ++S CA    L+LG 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H      GL L  P+AN L+ MY KC  L++A ++FD+     +VS   +I GY + G
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNG 239

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +                                EA  LF  M + GIKPD++T    L 
Sbjct: 240 LMG-------------------------------EAEHLFRGMISAGIKPDSITFASFLP 268

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
             ++L +L     IH +I +    L+V L +AL+D+Y KC ++  A ++  +    +++ 
Sbjct: 269 CVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVV 328

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
            T +I G  L+GK  +A+  F  ++   + P  +TF  I  A      ++ G++    + 
Sbjct: 329 CTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSII 388

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              +L  K    S ++D+  + G L+ A ++   +    D + W ++  +C  +G
Sbjct: 389 KT-KLDEKCHVGSAILDMYAKCGRLDLACRVFNRI-TEKDAICWNSMITSCSQNG 441



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y + G L  A+ +F  L       WN +I G+    +   AL  + +M   G+ PD  T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
            + + AC  L ++  G  +H  +       +V +G++L+ +YA+ G+++ A  +F  +P+
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           ++S+ +  ++ G   +G + +AI  F EM    + P+ +TF  +LS C    ++D G + 
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 436 FA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
               +S    L   +   + ++ +  +   L+ A +L  + P  +D+V W  +
Sbjct: 182 HGIAVSCGLELDSPVA--NTLLAMYSKCQCLQAARKLFDTSPQ-SDLVSWNGI 231



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY + G++  A  +F+ +    +  +  +I G  + G+   A+ ++ +M+G G+ PD+ T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F  ++ ACC    V  G K   +  ++  L   +   S ++ L   +G L +A+ L  ++
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 476 PMAADVVVWGALF 488
           P   D V+W  + 
Sbjct: 120 PQ-KDSVLWNVML 131


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 213/574 (37%), Positives = 323/574 (56%), Gaps = 18/574 (3%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFS---------WNVAIRGFL 54
           TG+I +    +R++   A S    L    + +F+  +  SFS         WN  I+   
Sbjct: 31  TGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHS 90

Query: 55  ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
                R+A+ L   ML NG    D F+  L+ K C+ LG    G +I G + K G   D+
Sbjct: 91  HGKDPRQALLLLCLMLENG-VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDL 149

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           ++ N +I +++ CG LGL+  +FD    R+ VS+NS+I+G+V+ G    A  LF  M +E
Sbjct: 150 FLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPME 209

Query: 175 RVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
               + ++   M+S  AQ  D +++  ++   + E  L       N+++D YVK G++E 
Sbjct: 210 M--KNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISW----NSMIDGYVKHGRIED 263

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A+ +FD M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ K  
Sbjct: 264 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYH 323

Query: 294 KEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            EAL +F +M+  + + PD  T V  L A +QLG L   I +H +I ++ F L   LG A
Sbjct: 324 MEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVA 383

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMY+KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A     ++  + L PD
Sbjct: 384 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPD 443

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           +ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+ LI
Sbjct: 444 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 503

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
             MP+  + V+W     AC  H     GE  A  L+     +   YVLL+NMY    MW+
Sbjct: 504 EEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWK 563

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +  +VR MM+ER +EK PGCS IE++G ++EF V
Sbjct: 564 DVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 213/574 (37%), Positives = 323/574 (56%), Gaps = 18/574 (3%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFS---------WNVAIRGFL 54
           TG+I +    +R++   A S    L    + +F+  +  SFS         WN  I+   
Sbjct: 38  TGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHS 97

Query: 55  ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
                R+A+ L   ML NG    D F+  L+ K C+ LG    G +I G + K G   D+
Sbjct: 98  HGKDPRQALLLLCLMLENG-VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDL 156

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           ++ N +I +++ CG LGL+  +FD    R+ VS+NS+I+G+V+ G    A  LF  M +E
Sbjct: 157 FLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPME 216

Query: 175 RVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
               + ++   M+S  AQ  D +++  ++   + E  L       N+++D YVK G++E 
Sbjct: 217 M--KNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISW----NSMIDGYVKHGRIED 270

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A+ +FD M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ K  
Sbjct: 271 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYH 330

Query: 294 KEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            EAL +F +M+  + + PD  T V  L A +QLG L   I +H +I ++ F L   LG A
Sbjct: 331 MEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVA 390

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMY+KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A     ++  + L PD
Sbjct: 391 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPD 450

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           +ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+ LI
Sbjct: 451 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 510

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
             MP+  + V+W     AC  H     GE  A  L+     +   YVLL+NMY    MW+
Sbjct: 511 EEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWK 570

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +  +VR MM+ER +EK PGCS IE++G ++EF V
Sbjct: 571 DVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 180/486 (37%), Positives = 288/486 (59%), Gaps = 4/486 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   + + G D    ++  +   + S G L  +  +F  +   ++  W ++I+G    G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              +A+  +  M  + VEP+  T   ++  C     +  G+ +H    + G    + +  
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRT 163

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+D+Y + G + SA+++FD+M  K++VS T M+  YAK G LD AR +FD + E+  V 
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN +I GY Q     EAL LF  M     KP+ VT +  LSAC QLGAL+ G W+H +IE
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
                 NV +GTALVDMY+KCG++  A  VF ++ +++ + + ++I G A+HG + +A+ 
Sbjct: 284 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 343

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            F  M  +GL P  ITF+GILSAC H G V EG   F +M   + + PK++HY CMV+LL
Sbjct: 344 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 403

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
           GR+G +E+A +L+++M +  D V+WG L  ACRLHG +++GE+    L++ +  +SG Y+
Sbjct: 404 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 463

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
           LL+N+Y     W+   ++R MM++ GV+K PGCSSIEVN  ++EF+    +HP+ ++IY 
Sbjct: 464 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYM 523

Query: 580 CLVQLT 585
            L ++ 
Sbjct: 524 MLEEIN 529



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 186/399 (46%), Gaps = 69/399 (17%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LDY   +    QNP+ F W   I G    G   +A++ Y QML  G   P+ FT+  + K
Sbjct: 78  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG-VEPNAFTFSSILK 136

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           +C        G  +    +KLGFD D+YV   ++ V+   GD+  A  +FD    ++LVS
Sbjct: 137 LCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVS 192

Query: 148 -------------------------------WNSLINGFVRSGFPREAIRLFRDMQLERV 176
                                          WN +I+G+ ++G P EA+ LFR M   + 
Sbjct: 193 LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA 252

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           +P+EVT++ ++SAC QL  L  GR +H YI  +G+   V +  AL+DMY KCG LE A  
Sbjct: 253 KPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARL 312

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD + +K VV+  +MIVGYA  GF                               S+EA
Sbjct: 313 VFDKIDDKDVVAWNSMIVGYAMHGF-------------------------------SQEA 341

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVD 355
           L LF  M   G+ P  +T +  LSAC   G + +G  I   ++ E      +     +V+
Sbjct: 342 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 401

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
           +  + G++ +A ++   M  E + + +  ++G   LHGK
Sbjct: 402 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 34/180 (18%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +L+    +   + + +  +WN  I G+   G  +EA+ L+K M R  G  P N T+
Sbjct: 302 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRM-GLHPTNITF 360

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C   G    G++IF  +       D Y               G+   +    C+
Sbjct: 361 IGILSACGHSGWVTEGWDIFNKM------KDEY---------------GIEPKIEHYGCM 399

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            NL+          R+G   +A  L ++M    +EPD V    ++ AC     + LG +I
Sbjct: 400 VNLLG---------RAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEKI 447


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 307/533 (57%), Gaps = 32/533 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   +  + E  + ++++ L+ +M R  G  P++FT+  + K C  L    +G  + G 
Sbjct: 109 SWTGMVACYAENDRFQDSLQLFAEM-RMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGC 167

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           VLK  +++D+YV   ++ ++   GD      VF+E    +++ W+ +I+ + +S   REA
Sbjct: 168 VLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREA 227

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF  M+   V P++ T   ++ +CA +E+L LG+++H ++ + GL   V ++NALMD+
Sbjct: 228 VELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDV 287

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG+L                               D + K+F +LP +  V WN +I
Sbjct: 288 YAKCGRL-------------------------------DNSMKLFMELPNRNEVTWNTMI 316

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GYVQ+    +AL+L+  M    ++   VT    L AC+ L A++ G  IH    K  ++
Sbjct: 317 VGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYD 376

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            +VV+G AL+DMYAKCG+I  A  VF  + ER+ +++ A+I G ++HG   +A+  F  M
Sbjct: 377 KDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMM 436

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
                +P+++TF+ ILSAC + GL+D G+ YF  M   + + P ++HY+CMV LLGRSG 
Sbjct: 437 QETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGH 496

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           L++A +LI  +P+  +V VW AL  AC +H +V +G  +A ++L++DPQD   +VLL+N+
Sbjct: 497 LDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNI 556

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y  +  W     VRK M+ +GV+K PG S IE  G+++ F V D SHP+++ I
Sbjct: 557 YARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMI 609



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 229/473 (48%), Gaps = 36/473 (7%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           + N+ S+   I+G++++ ++ E VDL+ ++ R G    + F +  + K+  S+    L Y
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREG-HELNPFVFTTILKLLVSVECAELAY 61

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            +   + KLG + + +V  A+I  +  CG +  A   FD    +++VSW  ++  +  + 
Sbjct: 62  SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             +++++LF +M++    P+  T  G++ AC  LE  ++G+ +H  + ++   + + +  
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+D+Y K G       +F+ M                               P+  V+P
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEM-------------------------------PKHDVIP 210

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           W+ +I  Y Q+ +S+EA+ LF +M+   + P+  T    L +C+ +  L  G  +H  + 
Sbjct: 211 WSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL 270

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K   + NV +  AL+D+YAKCG +  ++++F E+P RN +T+  +I G    G    A+S
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALS 330

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDL 458
            +  M+   +   E+T+  +L AC     ++ G +  +  + +I+     +   + ++D+
Sbjct: 331 LYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVG--NALIDM 388

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
             + G ++ A +L+  M    D + W A+     +HG V    +A   + E +
Sbjct: 389 YAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETE 440



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 32/262 (12%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K+   + N N  +WN  I G++++G   +A+ LYK ML     +    TY  + +
Sbjct: 294 LDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLE-CQVQASEVTYSSVLR 352

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CASL    LG +I    LK  +D D+ V NA+I ++  CG +  A  VFD    R+ +S
Sbjct: 353 ACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS 412

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G+   G   EA++ F+ MQ     P+++T + ++SAC+    L++G+       
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQ------- 465

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                      N    M    G +E   E +         +C   ++G  + G LD A K
Sbjct: 466 -----------NYFKSMVQDYG-IEPCMEHY---------TCMVWLLG--RSGHLDKAVK 502

Query: 268 IFDDLP-EKYVVPWNAIIGGYV 288
           + +++P E  V  W A++G  V
Sbjct: 503 LIEEIPLEPNVKVWRALLGACV 524



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPDAVTTVHCLSACSQLGALD 329
           +P++  V +  +I GYVQ+ +  E + LF  +   G  + P   TT+  L    +   L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL- 59

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
               +H  I K     N  +GTAL+D YA CG++  A Q F  +  ++ +++T ++   A
Sbjct: 60  -AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            + +  D++  F+EM  VG  P+  TF G+L AC
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 180/434 (41%), Positives = 266/434 (61%), Gaps = 3/434 (0%)

Query: 148 WNSLINGFVRSGFPRE---AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +N+ I GF R+  P     ++ LF  M +  + P+  T   +   C+     +LGR+ H 
Sbjct: 57  FNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHG 116

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            + ++   + V + N+++  Y  CG+L  A  +FD      VVS  +MI G  + G +  
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILE 176

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           A  +F  + E+  + WN +I GY Q  + KEALALF EMQ    +P++   V  LSACSQ
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQ 236

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           LGALD G W+H +I K+   ++ +L  AL+DMYAKCG+I  A+Q F    +R+   YTA 
Sbjct: 237 LGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAA 296

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I GLA++G + +A+  F +M G G+ PD ++++ +L AC H G V++G  YFA MS +  
Sbjct: 297 ISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHG 356

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           + P+L HY+CMVDLLGR+GLLEEAE+ + SMP+  D V+WGAL  ACR++GN  +G+R  
Sbjct: 357 IRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVG 416

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
             L+E D    G Y+LL+N+Y +S   E+A +VRK M  R V++ PGCS IEV G ++EF
Sbjct: 417 SLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEF 476

Query: 565 IVRDKSHPELEQIY 578
              D+SH + E+IY
Sbjct: 477 FSGDRSHEKTEEIY 490



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 203/432 (46%), Gaps = 71/432 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNS-FSWNVAIRGFLETGKM 59
           + I GL     +   +I+F A+  S ++DY   +L     P + F +N  IRGF    + 
Sbjct: 11  LIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRP 70

Query: 60  REAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
              +      +R G     P+NFT+  LF+ C++     LG +  G V+K  F++D++V 
Sbjct: 71  GSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVR 130

Query: 118 NAVIHVFVSCGDLGLACNVFDES--------------CVRN-----------------LV 146
           N++I  +  CG L  A  VFDES              C+RN                  +
Sbjct: 131 NSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDI 190

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN +I+G+ ++G P+EA+ LFR+MQ+   EP+   ++ ++SAC+QL  L+ G  +H YI
Sbjct: 191 SWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYI 250

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            +  + +   L+ AL+DMY KCG ++ A + F +   + V + T  I G A  G      
Sbjct: 251 GKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGC----- 305

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                     S+EAL LF +M+  GI PD V+ +  L ACS  G
Sbjct: 306 --------------------------SEEALQLFEQMKGEGISPDGVSYIAVLCACSHAG 339

Query: 327 ALDDGIWIHRFIEKENFN---LNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYT 382
            ++ G   H F    + +     +     +VD+  + G + +A +    MP + +++ + 
Sbjct: 340 WVEKG--FHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWG 397

Query: 383 AIIGGLALHGKA 394
           A++G   ++G A
Sbjct: 398 ALLGACRVYGNA 409


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 204/552 (36%), Positives = 306/552 (55%), Gaps = 15/552 (2%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            +ILF+  +N N  S+N  I G+ +     +A+ L+ +++ + G   D  +   +F+ CA
Sbjct: 293 AQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLM-SSGLGFDEISLSGVFRACA 351

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            +     G +I+   +K    +D+ V NA I ++  C  L  A  VFDE   R+ VSWN+
Sbjct: 352 LVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 411

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I    ++G   E + LF  M   R+EPDE T   ++ AC     L  G EIH  I +SG
Sbjct: 412 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSG 470

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +     +  +L+DMY KCG +E AE+I      +T VS           G ++   K+ +
Sbjct: 471 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVS-----------GTMEELEKMHN 519

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
              ++  V WN+II GYV  ++S++A  LF  M   GI PD  T    L  C+ L +   
Sbjct: 520 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 579

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH  + K+    +V + + LVDMY+KCG++  +  +F +   R+ +T+ A+I G A 
Sbjct: 580 GKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAH 639

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HGK  +AI  F  MI   + P+ +TF+ IL AC H GL+D+G +YF  M   + L P+L 
Sbjct: 640 HGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLP 699

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH-GNVSIGERAAMKLLE 509
           HYS MVD+LG+SG ++ A +LIR MP  AD V+W  L   C +H  NV + E A   LL 
Sbjct: 700 HYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLR 759

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           LDPQDS  Y LL+N+Y D+ MWE+   +R+ M    ++K PGCS +E+   L+ F+V DK
Sbjct: 760 LDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDK 819

Query: 570 SHPELEQIYDCL 581
           +HP  E+IY+ L
Sbjct: 820 AHPRWEEIYEEL 831



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 213/430 (49%), Gaps = 40/430 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G+L+ G+  ++++++  M R  GT  D  T+ ++ KVC+ L    LG +I G 
Sbjct: 105 SWNSMLSGYLQNGETLKSIEVFVDMGR-AGTEFDGRTFAIILKVCSCLEDTSLGMQIHGV 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+++G D D+   +A++ ++        +  VF     +N VSW+++I G V++     A
Sbjct: 164 VVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLA 223

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           ++ F++MQ       +     ++ +CA L +L LG ++H +  +S       +  A +DM
Sbjct: 224 LKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDM 283

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KC  ++ A+ +FD   N    S                               +NA+I
Sbjct: 284 YAKCDNMQDAQILFDKSENLNRQS-------------------------------YNAMI 312

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q +   +AL LFH + ++G+  D ++      AC+ +  L +G+ I+    K + +
Sbjct: 313 TGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLS 372

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L+V +  A +DMY KC  +A+A +VF EM  R+++++ AII     +GK  + +  F  M
Sbjct: 373 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 432

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS---CMVDLLGR 461
           +   + PDE TF  +L AC  G L      Y  ++ S    S    + S    ++D+  +
Sbjct: 433 LRSRIEPDEFTFGSVLKACTGGSL-----GYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 487

Query: 462 SGLLEEAEQL 471
            G++EEAE++
Sbjct: 488 CGMIEEAEKI 497



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 239/528 (45%), Gaps = 64/528 (12%)

Query: 1   MTITGLISHGFAPSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           M I G++      + ++A  A+    ++ K      ++   +   NS SW+  I G ++ 
Sbjct: 158 MQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 217

Query: 57  GKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115
             +  A+  +K+M + N G       Y  + + CA+L    LG ++  H LK  F  D  
Sbjct: 218 NLLSLALKFFKEMQKVNAGVSQS--IYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 275

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           V  A + ++  C ++  A  +FD+S   N  S+N++I G+ +     +A+ LF  +    
Sbjct: 276 VRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 335

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           +  DE+++ G+  ACA ++ L+ G +I+    +S L+L V +ANA +DMY KC  L  A 
Sbjct: 336 LGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAF 395

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD M  +  VS                               WNAII  + Q  +  E
Sbjct: 396 RVFDEMRRRDAVS-------------------------------WNAIIAAHEQNGKGYE 424

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
            L LF  M  + I+PD  T    L AC+  G+L  G+ IH  I K     N  +G +L+D
Sbjct: 425 TLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLID 483

Query: 356 MYAKCGNIAKALQVFHEMPERNS--------------------LTYTAIIGGLALHGKAL 395
           MY+KCG I +A ++     +R +                    +++ +II G  +  ++ 
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 543

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           DA   F+ M+ +G+ PD+ T+  +L  C +      G++  AQ+     L   +   S +
Sbjct: 544 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKK-ELQSDVYISSTL 602

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           VD+  + G L ++ +L+    +  D V W A+      HG    GE A
Sbjct: 603 VDMYSKCGDLHDS-RLMFEKSLRRDFVTWNAMICGYAHHGK---GEEA 646



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 179/439 (40%), Gaps = 64/439 (14%)

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           CA  G   LG +   H++  GF    +V N ++ V+ +  D   A  VFD   +R++VSW
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 149 NSLINGFVRS-------------------------------GFPREAIRLFRDMQLERVE 177
           N +ING+ +S                               G   ++I +F DM     E
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            D  T   ++  C+ LED +LG +IH  +   G    V  A+AL+DMY K  +   +  +
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  +  K  VS + +I G  +   L +                               AL
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSL-------------------------------AL 224

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
             F EMQ              L +C+ L  L  G  +H    K +F  + ++ TA +DMY
Sbjct: 225 KFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMY 284

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKC N+  A  +F +    N  +Y A+I G +       A+  F  ++  GL  DEI+  
Sbjct: 285 AKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLS 344

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+  AC     + EG + +  ++    LS  +   +  +D+ G+   L EA ++   M  
Sbjct: 345 GVFRACALVKGLSEGLQIY-DLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR- 402

Query: 478 AADVVVWGALFFACRLHGN 496
             D V W A+  A   +G 
Sbjct: 403 RRDAVSWNAIIAAHEQNGK 421


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 187/509 (36%), Positives = 296/509 (58%), Gaps = 37/509 (7%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           DN++        A +    +G ++    +KLG   D +V N +I+++ SC     A +V 
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151

Query: 138 DESC--VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           D +     + VSWN++I G++ +G P +A++ F  M   +V  D+VT++  + ACA+   
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           + +G+  H  +  +G  +   + ++L+ MY KCG++E                       
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVED---------------------- 249

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                    AR+IFD +P++  V W ++I GY Q  +SKEA+ LF +MQ  G+K D  T 
Sbjct: 250 ---------ARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATI 300

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              +S+C Q+GALD G ++H + +      ++ +  +L+DMY+KCG+I KA  +F  M +
Sbjct: 301 STVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVK 360

Query: 376 RNSLTYTAIIGGLA--LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           R++ ++T I+G  A  L G+ALD  +   E  GV  MP+EITFLG+L++C HGGLV++G 
Sbjct: 361 RDNFSWTVIMGFAANGLSGEALDLFAQMEEEGGV--MPNEITFLGVLTSCSHGGLVEQGY 418

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           ++F +MSSI+ ++P+++HY CMVDLLGR+ LL EAEQ I+ MP+A D V+W +L FACR 
Sbjct: 419 RHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRT 478

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
            G V + E  A ++  L+P   G  VLL+ +Y  ++ W +A KVR  +      K PGCS
Sbjct: 479 CGEVGLAEYVAERIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCS 538

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
            IEV+G ++EF   D+SH E E IY  L+
Sbjct: 539 FIEVDGCVHEFFAGDESHFETEAIYSTLL 567



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 166/335 (49%), Gaps = 35/335 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SWN  I G++  G   +A+  + QM + G    D+ T       CA   +  +G   
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAK-GQVMLDDVTLLNALVACARTCMMKVGKLC 218

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              ++  GF+++ Y+ +++I ++  CG +  A  +FD    RN V W S+I+G+ + G  
Sbjct: 219 HALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQS 278

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EAI+LFRDMQ+  V+ D+ T+  +VS+C Q+  L+LGR +H Y    GL   + + N+L
Sbjct: 279 KEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSL 338

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG ++ A +IF  MV +   S  T+I+G+A  G                     
Sbjct: 339 IDMYSKCGDIKKAYDIFCGMVKRDNFS-WTVIMGFAANGL-------------------- 377

Query: 282 AIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIE 339
                      S EAL LF +M+   G+ P+ +T +  L++CS  G ++ G    HR   
Sbjct: 378 -----------SGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSS 426

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
                  +     +VD+  +   +A+A Q   EMP
Sbjct: 427 IYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMP 461


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 325/587 (55%), Gaps = 46/587 (7%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  IR  +  G  + A++LY +M R  G  PD FT PL+ + C+SLG  +L   +  H 
Sbjct: 100 WNSIIRANVSHGYHQHALELYVEM-RKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHA 158

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           L++GF   ++V N ++ ++   G +  A  +FD   VR++VSWN++++G+  +     A 
Sbjct: 159 LQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGAS 218

Query: 166 RLFRDMQLERVEPDEVTMIGMVSA-----------------------------------C 190
           R+F+ M+LE ++P+ VT   ++S+                                   C
Sbjct: 219 RVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVC 278

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A + +++ G+EIH Y+ + G    + + NAL+  Y K   +  A ++F  + NK +VS  
Sbjct: 279 ADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWN 338

Query: 251 TMIVGYAKFGFLDIARKIF--------DD--LPEKYVVPWNAIIGGYVQAKRSKEALALF 300
            +I  YA+ G  D A   F        DD  L    V+ W+A+I G+    R +++L LF
Sbjct: 339 ALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELF 398

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            +MQ   +  + VT    LS C++L AL+ G  +H +  +   + N+++G  L++MY KC
Sbjct: 399 RQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKC 458

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G+  +   VF  +  R+ +++ ++IGG  +HG   +A+  F+EMI   + PD ITF+ IL
Sbjct: 459 GDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAIL 518

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC H GLV  GR  F QM + FR+ P ++HY+CMVDLLGR+GLL+EA  ++R+MP+  +
Sbjct: 519 SACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPN 578

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             VWGAL  +CR++ ++ I E  A ++L L  + +G ++LL+N+Y  +  W+++ +VR  
Sbjct: 579 EYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVS 638

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
              +G++K PG S IEV   +Y F   +  H  LE IY  L +L  H
Sbjct: 639 ARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGLEDIYVILEELNLH 685



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 168/389 (43%), Gaps = 75/389 (19%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
            PNS +W   +      G   E ++L+K M R  G         ++  VCA +     G 
Sbjct: 230 QPNSVTWTSLLSSHARCGLYDETLELFKVM-RTRGIEIGAEALAVVLSVCADMAEVDWGK 288

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           EI G+V+K G++  ++V NA+I  +     +G A  VF E   +NLVSWN+LI+ +  SG
Sbjct: 289 EIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESG 348

Query: 160 FPREA-----------------------------------------IRLFRDMQLERVEP 178
              EA                                         + LFR MQL +V  
Sbjct: 349 LCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMA 408

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           + VT+  ++S CA+L  LNLGRE+H Y   + ++  + + N L++MY+KCG  +    +F
Sbjct: 409 NCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVF 468

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D++  + ++S  ++I GY   G                                 + AL 
Sbjct: 469 DNIEGRDLISWNSLIGGYGMHGL-------------------------------GENALR 497

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMY 357
            F+EM    +KPD +T V  LSACS  G +  G     + + +     NV     +VD+ 
Sbjct: 498 TFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLL 557

Query: 358 AKCGNIAKALQVFHEMP-ERNSLTYTAII 385
            + G + +A  +   MP E N   + A++
Sbjct: 558 GRAGLLKEATDIVRNMPIEPNEYVWGALL 586



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 13/333 (3%)

Query: 120 VIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
           +I V+     L  A  VFD      + +L+ WNS+I   V  G+ + A+ L+ +M+    
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            PD  T+  ++ AC+ L    L R +H +  + G    + + N L+ MY K G++E A +
Sbjct: 129 LPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQ 188

Query: 237 IFDSMVNKTVVSCTTMIVGYA----KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +FD M  +++VS  TM+ GYA      G   + +++  +  +   V W +++  + +   
Sbjct: 189 LFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGL 248

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
             E L LF  M+  GI+  A      LS C+ +  +D G  IH ++ K  +   + +  A
Sbjct: 249 YDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNA 308

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG---- 408
           L+  Y K  ++  A +VF E+  +N +++ A+I   A  G   +A + F  M        
Sbjct: 309 LIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDH 368

Query: 409 --LMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
             + P+ I++  ++S   + G  ++  + F QM
Sbjct: 369 SLVRPNVISWSAVISGFAYKGRGEKSLELFRQM 401



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 8/240 (3%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           I+     G       AF  + +S + D+      ++  PN  SW+  I GF   G+  ++
Sbjct: 341 ISSYAESGLCDEAYAAFLHMEKSDSDDH------SLVRPNVISWSAVISGFAYKGRGEKS 394

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           ++L++QM +      +  T   +  VCA L    LG E+ G+ ++     ++ V N +I+
Sbjct: 395 LELFRQM-QLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLIN 453

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           +++ CGD      VFD    R+L+SWNSLI G+   G    A+R F +M   R++PD +T
Sbjct: 454 MYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNIT 513

Query: 183 MIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            + ++SAC+    +  GR +    ++E  +   V     ++D+  + G L+ A +I  +M
Sbjct: 514 FVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNM 573


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 305/529 (57%), Gaps = 39/529 (7%)

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + V +Y+QM +  G RPD F YP+L K   + G+ F       HVLKLG   D +V NAV
Sbjct: 13  KVVLMYEQM-QGCGVRPDAFVYPILIKSAGTGGIGF-----HAHVLKLGHGSDAFVRNAV 66

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++                  R +  WN++++G+ +     +A  LF D+  ER   + 
Sbjct: 67  IDMYA-----------------RKVADWNAMVSGYWKWESEGQAQWLF-DVMPER---NV 105

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T   MV+  A+++DL   R     + E     +V   NA++  Y + G  E A  +FD 
Sbjct: 106 ITWTAMVTGYAKVKDLEAARRYFDCMPER----SVVSWNAMLSGYAQNGLAEEALRLFDE 161

Query: 241 MVN--KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           M+   +  V+   MI  Y + G LD ARK+F+ +P + VV WN++I GY Q  +S  A+ 
Sbjct: 162 MLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 299 LFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
           LF EM  A  + PD VT V  +SAC  LGAL+ G W+ RF+ +    L++    A++ MY
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 281

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           ++CG++  A +VF EM  R+ ++Y  +I G A HG  ++AI+  S M   G+ PD +TF+
Sbjct: 282 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 341

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+L+AC H GL++EGRK F  +       P + HY+CMVDLLGR G LE+A++ +  MPM
Sbjct: 342 GVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPM 396

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
                V+G+L  A R+H  V +GE AA KL EL+P +SG ++LL+N+Y  +  W++  ++
Sbjct: 397 EPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERI 456

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           R+ M++ GV+KT G S +E  G L++FIV D+SH   + IY  L++L +
Sbjct: 457 REAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRK 505



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 4/215 (1%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +LD   K+   +   N  +WN  I G+ + G+   A++L+K+M+      PD  T   + 
Sbjct: 184 DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 243

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C  LG   LG  +   + +    + +  HNA+I ++  CG +  A  VF E   R++V
Sbjct: 244 SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV 303

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           S+N+LI+GF   G   EAI L   M+   +EPD VT IG+++AC+    L  GR++   I
Sbjct: 304 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 363

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            +  +         ++D+  + G+LE A+   + M
Sbjct: 364 KDPAIDHYA----CMVDLLGRVGELEDAKRTMERM 394



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 31/218 (14%)

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           Y   +   + + ++ +MQ  G++PDA      + +     A   GI  H  + K     +
Sbjct: 5   YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLGHGSD 59

Query: 347 VVLGTALVDMYA--------------KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             +  A++DMYA              K  +  +A  +F  MPERN +T+TA++ G A   
Sbjct: 60  AFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK 119

Query: 393 KALDAISYFSEMIGVGLMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
               A  YF        MP+   +++  +LS     GL +E  + F +M   +R S    
Sbjct: 120 DLEAARRYFD------CMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVT-- 171

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            ++ M+    R G L+ A +L  +MP   +VV W ++ 
Sbjct: 172 -WNAMISAYMRVGDLDSARKLFNTMP-GRNVVTWNSMI 207


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 191/485 (39%), Positives = 289/485 (59%), Gaps = 3/485 (0%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVI-HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +I  +++K G   D    + V+     S  D   A  VF     +N   WN++I GF RS
Sbjct: 43  QIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWNTIIRGFSRS 102

Query: 159 GFPREAIRLFRDM--QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
            FP  AI +F DM      V+P  +T   +  A A L     GR++H  + + GL     
Sbjct: 103 SFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSF 162

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + N ++ MYV CG L  A  +F  M+   VV+  ++I+G AK G +D A+K+FD++P++ 
Sbjct: 163 IRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRN 222

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V WN++I G+V+  R K+AL +F EMQ   +KPD  T V  L+AC+ LGA + G WIH+
Sbjct: 223 GVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHK 282

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +I +  F LN ++ TAL+DMY KCG   + L+VF   P +    + ++I GLA +G    
Sbjct: 283 YIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEER 342

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  F E+   GL PD ++F+G+L+AC H G V +  ++F  M   + + P +KHY+CMV
Sbjct: 343 AMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMV 402

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           ++LG +GLL+EAE LI+ MP+  D ++W +L  ACR +GNV + +RAA  L  LDP ++ 
Sbjct: 403 NVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNLDPDETC 462

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            YVL++N Y    ++EEA + R +M+ER +EK  GCSSIEV+  ++EF+   K HP+  +
Sbjct: 463 GYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFVSCGKKHPKSTE 522

Query: 577 IYDCL 581
           IY  L
Sbjct: 523 IYSLL 527



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 209/423 (49%), Gaps = 66/423 (15%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGLIS   A SR++AFC  S S + +Y   +   + + N F WN  IRGF  +     A+
Sbjct: 51  TGLISDTVAASRVLAFCCASPS-DRNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAI 109

Query: 64  DLYKQML-RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            ++  ML  +   +P   TYP +FK  ASLGL   G ++ G V+K G + D ++ N ++H
Sbjct: 110 SIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLH 169

Query: 123 VFVSCGDL-----------------------GLA-C-------NVFDESCVRNLVSWNSL 151
           ++V+CG L                       GLA C        +FDE   RN VSWNS+
Sbjct: 170 MYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSM 229

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I+GFVR+G  ++A+ +FR+MQ   V+PD  TM+ +++ACA L     GR IH YI  +  
Sbjct: 230 ISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRF 289

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            L   +  AL+DMY KCG  E   ++F+    K  +SC                      
Sbjct: 290 ELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQ-LSC---------------------- 326

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                   WN++I G       + A+ LF E++ TG++PD+V+ +  L+AC+  G +   
Sbjct: 327 --------WNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKA 378

Query: 332 IWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLA 389
               R + EK     ++   T +V++    G + +A  +  +MP E +++ +++++    
Sbjct: 379 GEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACR 438

Query: 390 LHG 392
            +G
Sbjct: 439 KNG 441



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 136/277 (49%), Gaps = 7/277 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   +   N  SWN  I GF+  G+ ++A++++++M +    +PD FT   L  
Sbjct: 208 IDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREM-QERDVKPDGFTMVSLLN 266

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA LG    G  I  ++++  F+++  V  A+I ++  CG       VF+ +  + L  
Sbjct: 267 ACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSC 326

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS+I G   +G    A+ LF +++   +EPD V+ IG+++ACA   +++   E    + 
Sbjct: 327 WNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMR 386

Query: 208 ESGLT-LTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIA 265
           E  +   ++     ++++    G L+ AE +   M V    +  ++++    K G +++A
Sbjct: 387 EKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMA 446

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           ++  + L  K + P      GYV    +  +  LF E
Sbjct: 447 KRAANCL--KNLDPDETC--GYVLMSNAYASYGLFEE 479


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 292/510 (57%), Gaps = 34/510 (6%)

Query: 77  PDNFTYPLLFKVCASLG--LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
           P + T P+  K  + L   LR  G ++    LKL    + +V  +++ ++  CG L  A 
Sbjct: 68  PSHLTIPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 126

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VFDE    + V W +LI  ++ +G  REA+ + R+     + PD  T + +++ACA++ 
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           DL  G  +     + G+  +V +A A +D+YVKCG++  A                    
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKA-------------------- 226

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                      R++FD +  K  V W A++GGY      +EAL LF  MQA G+KPD   
Sbjct: 227 -----------REVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYA 275

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               LSAC++LGALD G    R ++ + F  N VLGTAL+DMYAKCG+  +A  VF +M 
Sbjct: 276 VAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR 335

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ + + A+I GL + G    A +   +M   G+  ++ TF+G+L +C H GL+ +GR+
Sbjct: 336 KKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 395

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M+ ++ +SP+++HY CMVDLL R+GLL+EA QL+  MPM A+ V+ GAL   C++H
Sbjct: 396 YFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIH 455

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            N  + E    +L+ L+P +SG YV+L+N+Y +   WE+A K+R  M+ +GVEK P CS 
Sbjct: 456 RNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSW 515

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +E  G ++EF V DKSHP  +QIY  L +L
Sbjct: 516 VEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 545



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 172/366 (46%), Gaps = 34/366 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L    ++   + +P++  W   I  +++ G +REAV + +    NG  RPD+FT   +  
Sbjct: 122 LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAVRVLT 180

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G  ++    + G    ++V  A + ++V CG++  A  VFD+   ++ V+
Sbjct: 181 ACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA 240

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+  +G PREA+ LF  MQ E ++PD   + G +SAC +L  L+LGR+    + 
Sbjct: 241 WGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVD 300

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                    L  AL+DMY KCG    A  +F  M  K ++                    
Sbjct: 301 WDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV------------------- 341

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA+I G       K A AL  +M+ +G+K +  T +  L +C+  G 
Sbjct: 342 ------------WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGL 389

Query: 328 LDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           + DG  + H   +  + +  +     +VD+ ++ G + +A Q+  +MP   N++   A++
Sbjct: 390 IQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALL 449

Query: 386 GGLALH 391
           GG  +H
Sbjct: 450 GGCKIH 455



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 137/317 (43%), Gaps = 27/317 (8%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A S  +A  A+    +   +    ++   +++ ++ +W   + G+   G  REA+DL+
Sbjct: 202 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN-----AVI 121
             M +  G +PD +        C  LG   LG +    V     D D ++ N     A+I
Sbjct: 262 LAM-QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMV-----DWDEFLDNPVLGTALI 315

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG    A  VF +   ++++ WN++I G   +G  + A  L   M+   V+ ++ 
Sbjct: 316 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 375

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T IG++ +C     +  GR   H       ++  +     ++D+  + G L+ A ++ D 
Sbjct: 376 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDD 435

Query: 241 M-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK-------R 292
           M +    V    ++ G       ++A  +   L    + PWN+  G YV          R
Sbjct: 436 MPMPANAVILGALLGGCKIHRNTELAEHVLKQL--ILLEPWNS--GNYVMLSNIYSNRGR 491

Query: 293 SKEALALFHEMQATGIK 309
            ++A  L  +M+A G++
Sbjct: 492 WEDAAKLRLDMKAKGVE 508


>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
          Length = 530

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 284/486 (58%), Gaps = 9/486 (1%)

Query: 105 VLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           +LK G   V  ++  A++  + + G    A  +FDE   + LV   ++    V SG   +
Sbjct: 35  LLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQ 94

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSAC----AQLEDLNLGREIHWYISESGLTLTVPLAN 219
           AI +F DM  + V PD V +   + AC    +     N G+ IH  +  SG+   V ++ 
Sbjct: 95  AIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVST 154

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+ +Y + G+L  +  +FD M +++ ++   M+  YA+ G +D A ++F  +P + VV 
Sbjct: 155 ELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVS 214

Query: 280 WNAIIGGYVQAKRSKEALALFHEM---QATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           WN ++ GY  A R +EAL LF +M    +  + P+  T    L AC+  G L+ GIW+H 
Sbjct: 215 WNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHA 274

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKAL 395
           +IE+   N +  L   L+DMY KCG+I  ALQVF + P +  L ++T +I GLA+HG+  
Sbjct: 275 YIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTT 334

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           DA+  F  M   G+ PD++T +G+L+AC HGGLVDEG  YF  M + FR++PK++HY CM
Sbjct: 335 DALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 394

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           +DLLGR G L+EA  +IR+MPM  + V+WGA   AC++HGN+ +G+ AA +L  LDP D 
Sbjct: 395 IDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDP 454

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
              V+L++MY  +  W    + R+ M    V+KTPGCSSIE+ G ++EF+     HP+  
Sbjct: 455 WGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYA 514

Query: 576 QIYDCL 581
           +I   L
Sbjct: 515 EICSVL 520



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 163/384 (42%), Gaps = 73/384 (19%)

Query: 51  RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG----LRFLGYEIFGHVL 106
           R  + +G+  +A+ ++  M+ +G   PDN    +    C   G     R  G  I   V+
Sbjct: 84  RAHVASGQAAQAIAVFGDMVADG-VFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVV 142

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG------- 159
             G   D++V   +I V+   G+L ++  VFD+   R+ ++WN++++ + R G       
Sbjct: 143 TSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYE 202

Query: 160 ----FP--------------------REAIRLFRDMQLER---VEPDEVTMIGMVSACAQ 192
                P                    REA+ LFR M       V P+  TM  ++ ACA 
Sbjct: 203 MFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAG 262

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT-VVSCTT 251
              L  G  +H YI  + +     L   L+DMY KCG +++A ++F+    K  + S TT
Sbjct: 263 AGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTT 322

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           +I G A  G                               R+ +AL +F  MQ  GI PD
Sbjct: 323 VICGLAMHG-------------------------------RTTDALRMFDMMQDNGICPD 351

Query: 312 AVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
            VT V  L+AC+  G +D+G+ + +    K      +     ++D+  + G + +A  + 
Sbjct: 352 DVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMI 411

Query: 371 HEMP-ERNSLTYTAIIGGLALHGK 393
             MP + N++ + A +    +HG 
Sbjct: 412 RTMPMDPNTVIWGAFLSACKVHGN 435



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 112/222 (50%), Gaps = 10/222 (4%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG--GTRPDNFTYPL 84
            +D   ++   +   +  SWN  + G+   G+ REA+ L++QM+        P+  T   
Sbjct: 196 KVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMST 255

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VR 143
           +   CA  G    G  +  ++ +   + D Y+   +I ++  CG +  A  VF+++   +
Sbjct: 256 ILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKK 315

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDLNLGRE 201
           +L SW ++I G    G   +A+R+F  MQ   + PD+VT++G+++ACA   L D  LG  
Sbjct: 316 DLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLG-- 373

Query: 202 IHWYISESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM 241
            ++Y  E+   +T  + +   ++D+  + G+L+ A  +  +M
Sbjct: 374 -YFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTM 414


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 301/537 (56%), Gaps = 36/537 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  + G     +  +AV L  +M+  G    D  T   +  +C  LG R L   +  +
Sbjct: 135 AWNAMLSGLCRNTRAADAVTLLGRMVGEG-VAGDAVTLSSVLPMCVVLGDRALALVMHVY 193

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G   +++V NA+I V+   G L  A  VF    +R+LV+WNS+I+   + G    A
Sbjct: 194 AVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAA 253

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMD 223
           + LF  M    V PD +T++ + SA AQ  D    + +H Y+   G  +   +A NA++D
Sbjct: 254 VELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVD 313

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY K  K+                               D A+K+FD+LP++ VV WN +
Sbjct: 314 MYAKMSKI-------------------------------DAAQKVFDNLPDRDVVSWNTL 342

Query: 284 IGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY+Q   + EA+ ++++M    G+KP   T V  L A S LG L  G+ +H    K  
Sbjct: 343 ITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTG 402

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            NL+V + T L+D+YAKCG + +A+ +F  MP R++  + AII GL +HG    A+S FS
Sbjct: 403 LNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFS 462

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M    + PD +TF+ +L+AC H GLVD+GR +F  M +++ + P  KHY+CMVD+LGR+
Sbjct: 463 QMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRA 522

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G L+EA + I+SMP+  D  VWGAL  ACR+HGNV +G+ A+  L ELDP++ G YVL++
Sbjct: 523 GQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMS 582

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI--VRDKSHPELEQI 577
           NMY     W+    VR ++  + ++KTPG SS+EV G +  F    + + HP+ E+I
Sbjct: 583 NMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEI 639



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 216/452 (47%), Gaps = 41/452 (9%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLAC 134
           RPD+FT+P L +            ++    L+LG    +++   +++H ++  G +  A 
Sbjct: 66  RPDSFTFPPLVRAAPGPA---SAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAY 122

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VFDE   R++ +WN++++G  R+    +A+ L   M  E V  D VT+  ++  C  L 
Sbjct: 123 RVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLG 182

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           D  L   +H Y  + GL+  + + NAL+D+Y K G L  A  +F  M  + +V+      
Sbjct: 183 DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVT------ 236

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                                    WN+II    Q  +   A+ LFH M  +G+ PD +T
Sbjct: 237 -------------------------WNSIISANEQGGKVAAAVELFHGMMESGVCPDVLT 271

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEM 373
            V   SA +Q G       +H ++ +  +++ +++ G A+VDMYAK   I  A +VF  +
Sbjct: 272 LVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNL 331

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEG 432
           P+R+ +++  +I G   +G A +AI  +++M    GL P + TF+ +L A  + G + +G
Sbjct: 332 PDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQG 391

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            +  A +S    L+  +   +C++DL  + G L EA  L   MP  +    W A+     
Sbjct: 392 MRMHA-LSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRS-TGPWNAIIAGLG 449

Query: 493 LHGN--VSIGERAAMKLLELDPQDSGIYVLLA 522
           +HG+   ++   + M+  E+ P       LLA
Sbjct: 450 VHGHGAKALSLFSQMQQEEIKPDHVTFVSLLA 481



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++   +D   K+  N+ + +  SWN  I G+++ G   EA+ +Y  M  + G +P   T+
Sbjct: 316 AKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTF 375

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +    + LG    G  +    +K G ++D+YV   +I ++  CG L  A  +F+    
Sbjct: 376 VSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPR 435

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+   WN++I G    G   +A+ LF  MQ E ++PD VT + +++AC+    ++ GR  
Sbjct: 436 RSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRS- 494

Query: 203 HWYISESGLTLTVPLA---NALMDMYVKCGKLESAEEIFDSM 241
            ++     +   VP+A     ++DM  + G+L+ A E   SM
Sbjct: 495 -FFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSM 535


>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
          Length = 700

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 305/546 (55%), Gaps = 39/546 (7%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           P +F++NV IR F  + +   ++ L+  MLR     RPD +T P L    A      L  
Sbjct: 79  PTAFTYNVTIRLF-ASSRPDTSLRLFLSMLRAEVRVRPDAYTLPFLLLAAARCPAPALAR 137

Query: 100 EIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACN-VFDESCVRNLVSWNSLINGFVR 157
                + K+G  D D  VH+ +     SC D  LA   VFD    R++VSWNS++  + R
Sbjct: 138 SAHALLEKIGLGDHDHTVHSLI--TMYSCLDDHLAARRVFDGISHRDVVSWNSMVKAYER 195

Query: 158 SGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           +G   E   + R M  E  V P+ VT+  +++AC    +L LGR +  ++  +G+ +   
Sbjct: 196 AGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACRDAGNLVLGRWVEEWVRSAGMEVDSL 255

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + +AL+ MY KCG++  A                               R++FD +  K 
Sbjct: 256 IGSALVGMYEKCGEMAEA-------------------------------RRVFDGIRHKD 284

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV WNA+I GY Q   S EA+ALFH M+  G+ PD +T V  LS+C+ +GAL  G+ +  
Sbjct: 285 VVAWNAMITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDT 344

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +  +     NV +GTALVDMYAKCG++ KA  VF +MP +N  ++ A+I GLA +G+  D
Sbjct: 345 YAMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALICGLAFNGRGYD 404

Query: 397 AISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           AI  F  M    GL PD+ITF+G+LSAC H GL++ GR+ F  ++ +F++ P+++HYSC+
Sbjct: 405 AIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIEHYSCI 464

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLL R+G LEEA   I  MP   D V+ GAL  ACR   N  +GER   ++++L+P +S
Sbjct: 465 VDLLARAGHLEEAWDFIEEMPGKVDAVMLGALLAACRKCKNTEVGERVINRIMKLEPSNS 524

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
             YV+ + +Y  S+  +E+ ++  +M ERGV KTPGCS +EVNG + EF    +     E
Sbjct: 525 WNYVVSSKIYATSDKMDESARMIGLMRERGVNKTPGCSWVEVNGKVLEFYASTEPQHGAE 584

Query: 576 QIYDCL 581
            +Y  +
Sbjct: 585 DMYQLM 590


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 210/617 (34%), Positives = 320/617 (51%), Gaps = 51/617 (8%)

Query: 12  APSRLIAFCAISESKNLDYCTKILFNVQNP---NSFSWNVAIRGFLETGKMREAVDLYKQ 68
           APS   +  A   +          F+   P   ++   N  +  F        AV ++  
Sbjct: 91  APSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHA 150

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDMYVHNAVIHVFVS 126
           +L +G  RPD++++  L      +      +  ++   VLK G    + V NA+I +++ 
Sbjct: 151 LLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMK 210

Query: 127 C----------------------------------GDLGLACNVFDESCVRNLVSWNSLI 152
           C                                  GD+  A +VF+E   +  V WN++I
Sbjct: 211 CDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMI 270

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW-------- 204
           +G+V+SG   +A  LFR M  E+V  DE T   ++SACA       G+ +H         
Sbjct: 271 SGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPN 330

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           ++ E+ L    P+ NAL+ +Y K GK+  A+ IFD+M  K VVS  T++ GY   G LD 
Sbjct: 331 FVPEAAL----PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDK 386

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           A ++F  +P K  + W  ++ GYV    S++AL LF++M+A  +KP   T    ++AC +
Sbjct: 387 AVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGE 446

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           LGAL  G  +H  + +  F  +   G AL+ MYAKCG +  A  VF  MP  +S+++ A+
Sbjct: 447 LGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAM 506

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I  L  HG   +A+  F +M+  G+ PD I+FL IL+AC H GLVDEG  YF  M   F 
Sbjct: 507 ISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFG 566

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           +SP   HY+ ++DLLGRSG + EA  LI++MP      +W A+   CR +G++  G  AA
Sbjct: 567 ISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAA 626

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            +L  + PQ  G Y+LL+N Y  +  W +A +VRK+M +RGV+K PGCS IEV   ++ F
Sbjct: 627 DQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVF 686

Query: 565 IVRDKSHPELEQIYDCL 581
           +V D  HPE +++Y  L
Sbjct: 687 LVGDTKHPEAQEVYQFL 703


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 304/536 (56%), Gaps = 34/536 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SWN  I G+ + G   E++ L+ +M+     +PD  T   + + C  LG    G  +
Sbjct: 281 DAVSWNTMICGYSQVGLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEFGKYV 338

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             +++  G++ D    N +I+++  CG+L  +  VF     ++ VSWNS+IN ++++G  
Sbjct: 339 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSF 398

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA++LF+ M+ + V+PD VT + ++S   QL DL+LG+E+H  +++ G    + ++N L
Sbjct: 399 DEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTL 457

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG      E+ DS+                         K+F+++  + ++ WN
Sbjct: 458 VDMYAKCG------EMGDSL-------------------------KVFENMKARDIITWN 486

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            II   V ++     L +   M+  G+ PD  T +  L  CS L A   G  IH  I K 
Sbjct: 487 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 546

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               +V +G  L++MY+KCG++  + QVF  M  ++ +T+TA+I    ++G+   A+  F
Sbjct: 547 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 606

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM   G++PD + F+ I+ AC H GLV+EG  YF +M   +++ P+++HY+C+VDLL R
Sbjct: 607 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 666

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           S LL++AE  I SMP+  D  +WGAL  ACR+ G+  I ER + +++EL+P D+G YVL+
Sbjct: 667 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 726

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +N+Y     W++   +RK ++ RG++K PGCS +E+   +Y F    K   + E++
Sbjct: 727 SNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 782



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 229/470 (48%), Gaps = 38/470 (8%)

Query: 35  LFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +F + +P  N + WN  IR     G   EA+ LY +  R    +PD +T+P +   CA L
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGL 128

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +   I   VL +GF  D+Y+ NA+I ++    DL  A  VF+E  +R++VSWNSLI
Sbjct: 129 LDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+  +G+  EA+ ++   +   V PD  TM  ++ AC  L  +  G  IH  I + G+ 
Sbjct: 189 SGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 248

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V + N L+ MY K   L     IFD MV +  VS  TMI GY++ G  +         
Sbjct: 249 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYE--------- 299

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 E++ LF EM     KPD +T    L AC  LG L+ G 
Sbjct: 300 ----------------------ESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGK 336

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           ++H ++    +  +      L++MYAKCGN+  + +VF  M  ++S+++ ++I     +G
Sbjct: 337 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 396

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  F +M+   + PD +T++ +LS     G +  G++    ++ +   +  +   
Sbjct: 397 SFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM-GFNSNIVVS 454

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + +VD+  + G + ++ ++  +M  A D++ W  +  +C    + ++G R
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASCVHSEDCNLGLR 503



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 191/397 (48%), Gaps = 37/397 (9%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    ++   ++  +S SWN  I  +++ G   EA+ L+K M  +   +PD+ TY +L 
Sbjct: 366 NLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD--VKPDSVTYVMLL 423

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
            +   LG   LG E+   + K+GF+ ++ V N ++ ++  CG++G +  VF+    R+++
Sbjct: 424 SMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 483

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +WN++I   V S      +R+   M+ E V PD  TM+ ++  C+ L     G+EIH  I
Sbjct: 484 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 543

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + GL   VP+ N L++MY KCG L ++ ++F  M  K VV+ T +I     +G      
Sbjct: 544 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYG------ 597

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                      K+A+  F EM+A GI PD V  V  + ACS  G
Sbjct: 598 -------------------------EGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 632

Query: 327 ALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAI 384
            +++G+ + HR  +       +     +VD+ ++   + KA      MP + +S  + A+
Sbjct: 633 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 692

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           +    + G   +     SE I + L PD+  +  ++S
Sbjct: 693 LSACRMSGDT-EIAERVSERI-IELNPDDTGYYVLVS 727


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 291/504 (57%), Gaps = 40/504 (7%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++  + S  D+  A  VFDE   RN++  N +I  +V +GF RE I++F  M    V+PD
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++ AC+   ++ +G++IH   ++ GL+ T+ + N L+ MY KCG L  A  + D
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIA---------------------------------- 265
            M  + VVS  +++ GYA+    D A                                  
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 266 ---RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
              + +F  + +K +V WN +IG Y++     EA+ L+  M+A G +PDAV+    L AC
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
               AL  G  IH +IE++    N++L  AL+DMYAKCG + +A  VF  M  R+ +++T
Sbjct: 321 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I      G+  DA++ FS+M   GL+PD I F+  L+AC H GL++EGR  F  M+  
Sbjct: 381 AMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           ++++P+L+H +CMVDLLGR+G ++EA + I+ MPM  +  VWGAL  ACR+H N  IG  
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA KL +L P+ SG YVLL+N+Y  +  WEE   +R +M+ +G++K PG S++EVN +++
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 560

Query: 563 EFIVRDKSHPELEQIY---DCLVQ 583
            F+V D+SHP+  +IY   D LV+
Sbjct: 561 TFLVGDRSHPQSAEIYRELDVLVK 584



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 221/479 (46%), Gaps = 63/479 (13%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           K++    K+   +   N    NV IR ++  G  RE + ++  M  +   +PD++T+P +
Sbjct: 89  KDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMC-SCHVKPDHYTFPCV 147

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K C+  G   +G +I G   K+G    ++V N ++ ++  CG L  A  V DE   R++
Sbjct: 148 LKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV 207

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN-------- 197
           VSWNSL+ G+ ++    +A+ + R+M+  ++  D  TM  ++ A +     N        
Sbjct: 208 VSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF 267

Query: 198 --LGRE--IHW------YISESGLTLTV------------PLANALMDMYVKCGK---LE 232
             +G++  + W      Y+  +     V            P A ++  +   CG    L 
Sbjct: 268 FKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALS 327

Query: 233 SAEEIFDSMVNKTVVSC----TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
             ++I   +  K ++        +I  YAK G LD AR +F+++  + VV W A+I  Y 
Sbjct: 328 LGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYG 387

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
            + R  +A+ALF +MQ +G+ PD++  V  L+ACS  G L++G    + +  +++ +   
Sbjct: 388 FSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM-TDHYKITPR 446

Query: 349 LG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           L     +VD+  + G + +A +   EMP E N   + A++G   +H              
Sbjct: 447 LEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSN------------ 494

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
                    T +G+L+A     L  E   Y+  +S+I+  + + +  + + +++   GL
Sbjct: 495 ---------TDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGL 544



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  I  E+   N  LG  L+  YA   ++A A +VF E+PERN +    +I     +G 
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             + I  F  M    + PD  TF  +L AC   G +  G+K     + +  LS  L   +
Sbjct: 122 YREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVG-LSSTLFVGN 180

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +V + G+ G L EA  ++  M    DVV W +L
Sbjct: 181 GLVSMYGKCGFLSEARLVLDEMSR-RDVVSWNSL 213


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 322/569 (56%), Gaps = 13/569 (2%)

Query: 2   TITGLISHGFAPSR--LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
            +T  I   FA SR   +A  A    +N   C+     V++P  F WN  I+        
Sbjct: 23  NLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDP--FLWNAVIKSHSHGVDP 80

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           + A+  +  ML NG    D F+  L+ K C+ LG    G +I G + K G   D+++ N 
Sbjct: 81  KRALIWFCLMLENG-VSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNC 139

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I +++ CG LG A  +FD    R+ VS+NS+I+G+V+ G    A  LF  M  E    +
Sbjct: 140 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEM--KN 197

Query: 180 EVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
            ++   M+S  AQ  D +N+  ++   + E  L       N+L+D YVK G++E A+++F
Sbjct: 198 LISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW----NSLIDGYVKHGRMEDAKDLF 253

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ K   EAL 
Sbjct: 254 YVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALE 313

Query: 299 LFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
           +F+ M+  + + PD  T V  LSA +QLG L   + ++++I +++F L   LG AL+DM+
Sbjct: 314 IFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMH 373

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +KCG+I +A+ VF  +  ++   + A+IGGLA+HG    A     ++    + PD+ITF+
Sbjct: 374 SKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDDITFI 433

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+L+AC H GLV EG   F  M    ++ P+L+HY C+VD+L RSG +E A+ LI  MPM
Sbjct: 434 GVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIELAKHLIEDMPM 493

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             + V+W     ACR      IGE  A  L+     +   YVLL+NMY    MW++  +V
Sbjct: 494 EPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASLGMWKDVRRV 553

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           R MM++R + K PGCS IE++G ++EF V
Sbjct: 554 RMMMKQRKLHKIPGCSWIELDGNVHEFFV 582


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 309/579 (53%), Gaps = 48/579 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY--EIFGH 104
           N  +  F        AV ++  +L +G  RPD++++  L      +      +  ++   
Sbjct: 131 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 190

Query: 105 VLKLGFDVDMYVHNAVIHVFVSC----------------------------------GDL 130
           VLK G    + V NA+I +++ C                                  GD+
Sbjct: 191 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 250

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A +VF+E   +  V WN++I+G+V+SG   +A  LFR M  E+V  DE T   ++SAC
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310

Query: 191 AQLEDLNLGREIHW--------YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           A       G+ +H         ++ E+ L    P+ NAL+ +Y K GK+  A+ IFD+M 
Sbjct: 311 ANAGFFVHGKSVHGQIIRLQPNFVPEAAL----PVNNALVTLYSKGGKIVIAKRIFDTMN 366

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K VVS  T++ GY   G LD A ++F  +P K  + W  ++ GYV    S++AL LF++
Sbjct: 367 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 426

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+A  +KP   T    ++AC +LGAL  G  +H  + +  F  +   G AL+ MYAKCG 
Sbjct: 427 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 486

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A  VF  MP  +S+++ A+I  L  HG   +A+  F +M+  G+ PD I+FL IL+A
Sbjct: 487 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 546

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLVDEG  YF  M   F +SP   HY+ ++DLLGRSG + EA  LI++MP      
Sbjct: 547 CNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 606

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +W A+   CR +G++  G  AA +L  + PQ  G Y+LL+N Y  +  W +A +VRK+M 
Sbjct: 607 IWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMR 666

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +RGV+K PGCS IEV   ++ F+V D  HPE +++Y  L
Sbjct: 667 DRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFL 705



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 202/436 (46%), Gaps = 51/436 (11%)

Query: 118 NAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE- 174
            +++    + G L  A   FD      R+ V  N++++ F R+     A+ +F  +    
Sbjct: 98  TSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 157

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGR--EIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            + PD+ +   ++SA  Q+ +L      ++H  + +SG    + ++NAL+ +Y+KC   E
Sbjct: 158 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 217

Query: 233 S---AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
           +   A ++ D M +K  ++ TTM+VGY + G ++ AR +F+++  K+ V WNA+I GYVQ
Sbjct: 218 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 277

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK--ENFNLNV 347
           +    +A  LF  M +  +  D  T    LSAC+  G    G  +H  I +   NF    
Sbjct: 278 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 337

Query: 348 VL--GTALVDMYAKCGNIA-------------------------------KALQVFHEMP 374
            L    ALV +Y+K G I                                KA++VF  MP
Sbjct: 338 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 397

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            +N L++  ++ G    G + DA+  F++M    + P + T+ G ++AC   G +  GR+
Sbjct: 398 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 457

Query: 435 YFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
             A +    F  S      + ++ +  + G + +A  +   MP   D V W A+  A   
Sbjct: 458 LHAHLVQCGFEASNSAG--NALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQ 514

Query: 494 HGNVSIGERAAMKLLE 509
           HG+     R A++L +
Sbjct: 515 HGH----GREALELFD 526



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 75/387 (19%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I G++++G   +A +L+++M+       D FT+  +   CA+ G    G  + G +
Sbjct: 268 WNAMISGYVQSGMCADAFELFRRMVSEK-VPLDEFTFTSVLSACANAGFFVHGKSVHGQI 326

Query: 106 LKLG----FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS--- 158
           ++L      +  + V+NA++ ++   G + +A  +FD   ++++VSWN++++G++ S   
Sbjct: 327 IRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCL 386

Query: 159 ----------------------------GFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
                                       G   +A++LF  M+ E V+P + T  G ++AC
Sbjct: 387 DKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAAC 446

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            +L  L  GR++H ++ + G   +    NAL+ MY KCG +  A  +F  M N   VS  
Sbjct: 447 GELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVS-- 504

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                        WNA+I    Q    +EAL LF +M A GI P
Sbjct: 505 -----------------------------WNAMISALGQHGHGREALELFDQMVAEGIDP 535

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKA 366
           D ++ +  L+AC+  G +D+G     + E    +  +  G      L+D+  + G I +A
Sbjct: 536 DRISFLTILTACNHAGLVDEGF---HYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEA 592

Query: 367 LQVFHEMP-ERNSLTYTAIIGGLALHG 392
             +   MP E     + AI+ G   +G
Sbjct: 593 RDLIKTMPFEPTPSIWEAILSGCRTNG 619



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 140/298 (46%), Gaps = 20/298 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S  LD   ++   +   N  SW V + G++  G   +A+ L+ QM R    +P ++TY 
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYA 440

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                C  LG    G ++  H+++ GF+      NA++ ++  CG +  A  VF      
Sbjct: 441 GAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNL 500

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           + VSWN++I+   + G  REA+ LF  M  E ++PD ++ + +++AC     ++ G   H
Sbjct: 501 DSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG--FH 558

Query: 204 WYIS---ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV------ 254
           ++ S   + G++        L+D+  + G++  A ++  +M  +   S    I+      
Sbjct: 559 YFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTN 618

Query: 255 GYAKFGFLDIARKIFDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           G  +FG    A ++F  +P+    Y++  N     Y  A R  +A  +   M+  G+K
Sbjct: 619 GDMEFGAY-AADQLFRMIPQHDGTYILLSNT----YSAAGRWVDAARVRKLMRDRGVK 671


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 201/517 (38%), Positives = 306/517 (59%), Gaps = 14/517 (2%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG-LRFLGYEI 101
           +F  N+ IR    +   R A   +  +LR+G T PD FT+P L K  + L      G ++
Sbjct: 43  TFLHNLLIRASATSPSPRLAFAAFSSILRSGDT-PDRFTFPSLLKSASRLASFPRTGAQV 101

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSG 159
               ++ G  VD++V N ++ ++ +  D      VFD SC  V +LV+WN+++ G+V+ G
Sbjct: 102 HAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFD-SCAGVADLVTWNTMLGGYVKCG 160

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              EA R+F  M     + + V+   MV A A   +L++ RE+  +     +   V   N
Sbjct: 161 EIGEARRVFEQMP----QRNGVSWSAMVGAYAGAGELDVAREM--FDEMPAIGRNVVSWN 214

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +++  + + G L  A ++FD M  + +VS  TM+ GYA  G ++ AR++FD +PEK VV 
Sbjct: 215 SMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVS 274

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           W  +I GY QA+   E L LF  MQ+ + + P+ VT V  LSAC+ L AL++G W H FI
Sbjct: 275 WTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFI 334

Query: 339 EKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +K    L+    LG AL+DMY+KCG    A+++FH + ++N   + A+I GLA++G    
Sbjct: 335 DKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRS 394

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           +I  F +M   G  P+ ITF+G+L+AC HGGLVDEGR+ F  M+S   + P+ KHY CMV
Sbjct: 395 SIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMV 454

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           D+LGR+GLLEEAE+LIRSMPM  DV++ GAL  ACR+H  V +  R   ++L L  Q SG
Sbjct: 455 DMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSG 514

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
            +VL++++Y  +  W +A   R ++++ G+ K  G S
Sbjct: 515 CHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 37/213 (17%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+    D   KI  ++   N  +WN  I G    G +R ++D+++QM R  G +P+  T+
Sbjct: 356 SKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQM-RRSGEKPNGITF 414

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA  GL   G   F                           +   C V  E+  
Sbjct: 415 VGVLTACAHGGLVDEGRRCF-------------------------QSMASTCGVQPEA-- 447

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
                +  +++   R+G   EA  L R M +    PD + +  ++ AC   + +++   +
Sbjct: 448 ---KHYGCMVDMLGRAGLLEEAEELIRSMPM---VPDVMILGALLGACRMHKRVDVAARV 501

Query: 203 HWYISESGLTLTVPLANALM-DMYVKCGKLESA 234
              I   GL+      + L+ D+Y   GK   A
Sbjct: 502 QNEI--LGLSTQQSGCHVLISDIYAAAGKWADA 532


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 311/570 (54%), Gaps = 34/570 (5%)

Query: 49  AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL 108
           AI    +  K+ EAV   + + R G  R D+ T   L + CA       G  +  H+   
Sbjct: 30  AIVKLCKKNKLNEAVSSLENLARRG-LRLDSRTLASLLQHCADSRALREGKRVHLHLKLT 88

Query: 109 GFDVD-MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR---------- 157
           G      ++ N +I+++  CG    A  VFD+   RNL SWN++++G+ +          
Sbjct: 89  GLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKL 148

Query: 158 ---------------------SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
                                 G+  EA+R + + +   ++ +  +  G+++ C +L+++
Sbjct: 149 FDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEV 208

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
            L R++H  I  +G    V L+++++D YVKCG +  A ++FD M  + V++ TTM+ GY
Sbjct: 209 GLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           AK+G +  A ++F ++PEK  V W A+I GY +     +AL LF +M    ++PD  T  
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
            CL AC+ + +L  G  IH ++ + NF  N ++ +AL+DMY+KCG++    +VF  M  +
Sbjct: 329 SCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNK 388

Query: 377 -NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            + + +  II  LA HG   +AI    +M+  G  PD+ITF+ IL+AC H GLV +G  +
Sbjct: 389 LDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNF 448

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  MS  + + P  +HY+C++DLLGR+G  EE    +  MP   D  VW AL   CR+HG
Sbjct: 449 FESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHG 508

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           ++ +G +AA +L+EL+PQ S  YVLL+++Y     WE   KVR++M ER V+K    S +
Sbjct: 509 HIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWL 568

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           E+   ++ F V D SHP  EQIY  L QL 
Sbjct: 569 EIENKVHSFSVSDSSHPLKEQIYSVLEQLA 598


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 314/564 (55%), Gaps = 53/564 (9%)

Query: 1   MTITGLISHGFAPSRLIAFCAI-SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  + +I +    SRLI FC    E+ NL Y   +  ++  P+ + WN  IRG+  +   
Sbjct: 29  MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +A+  Y++MLR G + PD FT+P + K C+ L     G  + G V+K GF+V+MYV   
Sbjct: 89  DKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTC 147

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++H+++ CG++     VF++    N+V+W SLI+GFV +    +AI  FR+MQ   V+ +
Sbjct: 148 LLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKAN 207

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E  M+ ++ AC        GR    Y  +S +   V LA +L+DM               
Sbjct: 208 ETIMVDLLVAC--------GRCFDPYF-QSKVGFNVILATSLIDM--------------- 243

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                           YAK G L  AR +FD +PE+ +V WN+II GY Q   ++EAL +
Sbjct: 244 ----------------YAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCM 287

Query: 300 FHEMQATGIKPDAVTTVHCLSA-----CSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           F +M   GI PD VT +  + A     CSQLG       IH ++ K  F  +  +  ALV
Sbjct: 288 FLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQS-----IHAYVSKTGFVKDAAIVCALV 342

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDE 413
           +MYAK G+   A + F ++ +++++ +T +I GLA HG   +A+S F  M   G   PD 
Sbjct: 343 NMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDG 402

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           IT+LG+L AC H GLV+EG++YFA+M  +  L P ++HY CMVD+L R+G  EEAE+L++
Sbjct: 403 ITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVK 462

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           +MP+  +V +WGAL   C +H N+ + +R    + E +   SGIYVLL+N+Y  +  W +
Sbjct: 463 TMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWAD 522

Query: 534 AGKVRKMMEERGVEKTPGCSSIEV 557
              +R+ M+ + V+K  G SS+E 
Sbjct: 523 VKLIRESMKSKRVDKVLGHSSVET 546


>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
          Length = 530

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 284/486 (58%), Gaps = 9/486 (1%)

Query: 105 VLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           +LK G   V  ++  A++  + + G    A  +FDE   + LV   ++    V SG   +
Sbjct: 35  LLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQ 94

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSAC----AQLEDLNLGREIHWYISESGLTLTVPLAN 219
           AI +F DM  + V PD V +   + AC    +     N G+ IH  +  SG+   V ++ 
Sbjct: 95  AIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVST 154

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
            L+ +Y + G+L  +  +FD M +++ ++   M+  YA+ G +D A ++F  +P + VV 
Sbjct: 155 ELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVS 214

Query: 280 WNAIIGGYVQAKRSKEALALFHEM---QATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           WN ++ GY  A R +EAL LF +M    +  + P+  T    L AC+  G L+ GIW+H 
Sbjct: 215 WNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHA 274

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKAL 395
           +IE+   N +  L   L+DMY KCG+I  ALQVF + P +  L ++T +I GLA+HG+  
Sbjct: 275 YIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTT 334

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           DA+  F  M   G+ PD++T +G+L+AC HGGLVDEG  YF  M + FR++PK++HY CM
Sbjct: 335 DALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 394

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           +DLLGR G L+EA  +IR+MPM  + V+WGA   AC++HGN+ +G+ AA +L  LDP D 
Sbjct: 395 IDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDP 454

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
              V+L++MY  +  W    + R+ M    V+KTPGCSSIE+ G ++EF+     HP+  
Sbjct: 455 WGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYA 514

Query: 576 QIYDCL 581
           +I   L
Sbjct: 515 EICSVL 520



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 163/384 (42%), Gaps = 73/384 (19%)

Query: 51  RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG----LRFLGYEIFGHVL 106
           R  + +G+  +A+ ++  M+ +G   PDN    +    C   G     R  G  I   V+
Sbjct: 84  RAHVASGQAAQAIAVFGDMVADG-VFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVV 142

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG------- 159
             G   D++V   +I V+   G+L ++  VFD+   R+ ++WN++++ + R G       
Sbjct: 143 TSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYE 202

Query: 160 ----FP--------------------REAIRLFRDMQLER---VEPDEVTMIGMVSACAQ 192
                P                    REA+ LFR M       V P+  TM  ++ ACA 
Sbjct: 203 MFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAG 262

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT-VVSCTT 251
              L  G  +H YI  + +     L   L+DMY KCG +++A ++F+    K  + S TT
Sbjct: 263 AGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTT 322

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           +I G A  G                               R+ +AL +F  MQ  GI PD
Sbjct: 323 VICGLAMHG-------------------------------RTTDALRMFDMMQDNGICPD 351

Query: 312 AVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
            VT V  L+AC+  G +D+G+ + +    K      +     ++D+  + G + +A  + 
Sbjct: 352 DVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMI 411

Query: 371 HEMP-ERNSLTYTAIIGGLALHGK 393
             MP + N++ + A +    +HG 
Sbjct: 412 RTMPMDPNTVIWGAFLSACKVHGN 435



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 112/222 (50%), Gaps = 10/222 (4%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG--GTRPDNFTYPL 84
            +D   ++   +   +  SWN  + G+   G+ REA+ L++QM+        P+  T   
Sbjct: 196 KVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMST 255

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC-VR 143
           +   CA  G    G  +  ++ +   + D Y+   +I ++  CG +  A  VF+++   +
Sbjct: 256 ILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKK 315

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDLNLGRE 201
           +L SW ++I G    G   +A+R+F  MQ   + PD+VT++G+++ACA   L D  LG  
Sbjct: 316 DLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLG-- 373

Query: 202 IHWYISESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSM 241
            ++Y  E+   +T  + +   ++D+  + G+L+ A  +  +M
Sbjct: 374 -YFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTM 414


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 202/574 (35%), Positives = 306/574 (53%), Gaps = 38/574 (6%)

Query: 49  AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL 108
            I+ F +       + ++  ML  G   PD+   P + K CA+L     G ++    L  
Sbjct: 45  TIQIFSKLNHFGHVIRVFSYMLTQG-IVPDSRVLPTVIKTCAALSALQTGKQMHCFALVS 103

Query: 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDE----------------------------- 139
           G  +D  V ++++H++V    L  A NVFD+                             
Sbjct: 104 GLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELF 163

Query: 140 ------SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
                     NLVSWN +I+GF RSG   +A+ +F++M LE ++PD  ++  ++ A   L
Sbjct: 164 YQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDL 223

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           +   +G +IH Y+ + GL     + +AL+DMY KC        +F+ M    V +C  ++
Sbjct: 224 DMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALV 283

Query: 254 VGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
            G ++ G +D A ++F      +  VV W ++I    Q  +  EAL LF EMQ  G+KP+
Sbjct: 284 TGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPN 343

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           +VT    L AC  + AL  G   H F  +     +V +G+AL+DMYAKCG +  +   F 
Sbjct: 344 SVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFD 403

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            MP RN +++ +++ G A+HGK  +AI+ F  M   G  PD ++F  +LSAC  GGL +E
Sbjct: 404 MMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEE 463

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G  YF  MS    +  +++HYSCMV LLGRSG LEEA  +I+ MP   D  VWGAL  +C
Sbjct: 464 GWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSC 523

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R+H  V +GE AA ++ EL+P++ G Y+LL+N+Y    MW E   VR MM  RG++K PG
Sbjct: 524 RVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPG 583

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            S IE+   ++  +  D SHP++ QI + L +LT
Sbjct: 584 YSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLT 617



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 193/426 (45%), Gaps = 73/426 (17%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G+++     SR      + E+K L Y T+ L  V+  N  SWN  I GF  +G   +AV 
Sbjct: 139 GVVTSSALISRFARKGRVKETKELFYQTRDL-GVE-LNLVSWNGMISGFNRSGSYLDAVL 196

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           +++ M    G +PD  +   +      L +  +G +I  +V+K G   D +V +A+I ++
Sbjct: 197 MFQNMHLE-GLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMY 255

Query: 125 VSCG---------------DLGLACNVFDESCVR-------------------NLVSWNS 150
             C                D+G ACN       R                   N+VSW S
Sbjct: 256 GKCACASEMSGVFNEMDEVDVG-ACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTS 314

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I    ++G   EA+ LFR+MQ+E V+P+ VT+  ++ AC  +  L  G+  H +   +G
Sbjct: 315 MIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNG 374

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +   V + +AL+DMY KCG++ ++   FD M N+ +VS  +++ GYA  G          
Sbjct: 375 IFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHG---------- 424

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                                ++ EA+ +F  MQ  G KPD V+    LSAC+Q G  ++
Sbjct: 425 ---------------------KTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEE 463

Query: 331 GIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
           G W +      N  +   +   + +V +  + G + +A  +  +MP E +S  + A++  
Sbjct: 464 G-WFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSS 522

Query: 388 LALHGK 393
             +H +
Sbjct: 523 CRVHNR 528


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 293/498 (58%), Gaps = 11/498 (2%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL--ACNVFDESCVRNLVSWNSLINGFVRS 158
           I   ++  GF  D +  + ++        +GL  +  +FD     N   WN+++  +++S
Sbjct: 48  ILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQS 107

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACA-QLEDLNLGREIHWYISESGLTLTVPL 217
               +A+ L++ M    V PD  T   +V ACA +L +   G+EIH ++ + G    V +
Sbjct: 108 NSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFDSDVYV 166

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI---ARKIFDDLPE 274
            N L++MY  CG +  A ++FD       VS  +++ GY K G +     A K+F+++ E
Sbjct: 167 QNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDE 226

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +V W+A+I GY Q    +EAL +F EM A G++ D V  V  LSAC+ L  +  G  I
Sbjct: 227 KDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMI 286

Query: 335 HRFIEKENFNLNVVLGTALV----DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           H  + +      V L  AL+    DMY KCG +  AL+VF+ M E+   ++ A+I GLA+
Sbjct: 287 HGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAV 346

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           +G    ++  FSEM   G++P+EITF+G+L AC H GLVDEGR +FA M     + P +K
Sbjct: 347 NGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVK 406

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY CMVDLLGR+GLL EAE+LI SMPMA DV  WGAL  AC+ HG+  +GER   KL+EL
Sbjct: 407 HYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIEL 466

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
            P   G +VLL+N++     WE+  +VR MM+++GV KTPGCS IE NG+++EF+  DK+
Sbjct: 467 QPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKT 526

Query: 571 HPELEQIYDCLVQLTRHF 588
           HP + ++   L ++ +  
Sbjct: 527 HPWINKVEGMLNEMAKRL 544



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 227/464 (48%), Gaps = 80/464 (17%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M +TG IS  FA SRL+ F   S    LDY  +I   ++N N F WN  +R ++++    
Sbjct: 52  MILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAE 111

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ LYK M++N    PDN+TYPL+ + CA   L F G EI  HVLK+GFD D+YV N +
Sbjct: 112 KALLLYKLMVKNN-VGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTL 170

Query: 121 IHVFVSCGDLGLACNVFDESCV----------------------------------RNLV 146
           I+++  CG++  A  +FDES V                                  +++V
Sbjct: 171 INMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMV 230

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW++LI+G+ ++G   EA+ +F +M    +  DEV ++ ++SACA L  +  G+ IH  +
Sbjct: 231 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 290

Query: 207 SESGLTLTVPLANALM----DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
              G+   V L NAL+    DMY+KCG +E+A E+F+ M  K V S   +I+G A  G +
Sbjct: 291 IRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLV 350

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           +                                +L +F EM+  G+ P+ +T +  L AC
Sbjct: 351 E-------------------------------RSLDMFSEMKNNGVIPNEITFMGVLGAC 379

Query: 323 SQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLT 380
             +G +D+G       IEK     NV     +VD+  + G + +A ++   MP   +  T
Sbjct: 380 RHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVAT 439

Query: 381 YTAIIGGLALHGKALDAISYFSEMIG---VGLMPDEITFLGILS 421
           + A++G    HG      +   E +G   + L PD   F  +LS
Sbjct: 440 WGALLGACKKHGD-----TEMGERVGRKLIELQPDHDGFHVLLS 478


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 316/571 (55%), Gaps = 36/571 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SW V + G    G+  +AV  +  M+   G  P  F    +   CA+   R +G ++
Sbjct: 127 DAVSWTVMVVGLNRAGRFWDAVKTFLDMV-GEGLAPSQFMLTNVLSSCAATEARGIGRKV 185

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGD-------------------------------L 130
              V+KLG    + V N+V++++  CGD                               +
Sbjct: 186 HSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRM 245

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RDMQLERVEPDEVTMIGMVSA 189
            LA ++F+    R++VSWN++I G+ ++G    A++ F R +    +EPDE T+  ++SA
Sbjct: 246 DLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSA 305

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV--NKTVV 247
           CA L  L +G+++H YI  +G+  +  + NAL+  Y K G +E+A  I D  V  +  V+
Sbjct: 306 CANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVI 365

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T ++ GY K G    AR++FD +  + V+ W A+I GY Q  ++ EA+ LF  M  +G
Sbjct: 366 SFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSG 425

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P++ T    LSAC+ L  L  G  IH    +     +V +  A++ +YA+ G++  A 
Sbjct: 426 PEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLAR 485

Query: 368 QVFHEMPERN-SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           +VF ++  R  ++T+T++I  LA HG    AI  F EM+ VG+ PD +T++G+ SAC H 
Sbjct: 486 RVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHA 545

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G +D+G++Y+ QM +   + P++ HY+CMVDLL R+GLL EA + I+ MP+A D VVWG+
Sbjct: 546 GFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGS 605

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+  N  + E AA KLL +DP +SG Y  LAN+Y     W +A ++ K+ +++ V
Sbjct: 606 LLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAV 665

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +K  G S   V   ++ F   D  HP+ + I
Sbjct: 666 KKETGFSWTHVQSKVHVFGADDVLHPQRDAI 696



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 40/433 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           + +  N+++ ++   G L  A  VF +   R+ VSW  ++ G  R+G   +A++ F DM 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            E + P +  +  ++S+CA  E   +GR++H ++ + GL+  VP+AN+++ MY KCG  E
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  ++  S   M+  Y   G +D+A  +F+++ E+ +V WNAII GY Q   
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGL 275

Query: 293 SKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-------- 343
              AL  F  M  A+ ++PD  T    LSAC+ L  L  G  +H +I +           
Sbjct: 276 DDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335

Query: 344 -------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
                                    +LNV+  TAL++ Y K G+  +A +VF  M  R+ 
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +TA+I G   +G+  +A+  F  MI  G  P+  T   +LSAC     +  G++   +
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCR 455

Query: 439 -MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            + S+   S  + +   ++ +  RSG +  A ++   +    + V W ++  A   HG  
Sbjct: 456 AIRSLQEQSVSVSN--AIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG-- 511

Query: 498 SIGERAAMKLLEL 510
            +GE+A +   E+
Sbjct: 512 -LGEQAIVLFEEM 523



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 167/385 (43%), Gaps = 72/385 (18%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D    +  N++  +  SWN  I G+ + G    A+  + +ML      PD FT   +  
Sbjct: 245 MDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLS 304

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----- 142
            CA+L +  +G ++  ++L+ G      + NA+I  +   G +  A  + D++ V     
Sbjct: 305 ACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNV 364

Query: 143 ----------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
                                       R++++W ++I G+ ++G   EA+ LFR M   
Sbjct: 365 ISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRS 424

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             EP+  T+  ++SACA L  L  G++IH     S    +V ++NA++ +Y + G +  A
Sbjct: 425 GPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLA 484

Query: 235 EEIFDSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
             +FD +   K  V+ T+MIV  A+ G                                 
Sbjct: 485 RRVFDQICWRKETVTWTSMIVALAQHGL-------------------------------G 513

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA- 352
           ++A+ LF EM   G+KPD VT +   SAC+  G +D G    R+ E+      +V   + 
Sbjct: 514 EQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKG---KRYYEQMLNEHGIVPEMSH 570

Query: 353 ---LVDMYAKCGNIAKALQVFHEMP 374
              +VD+ A+ G + +A +    MP
Sbjct: 571 YACMVDLLARAGLLTEAHEFIQRMP 595



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 51/345 (14%)

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGK----LESAEEIFDSM--VNKTVVSCTTM 252
           GR IH +  ++GL ++  L N L+  Y + G        A  +FD +    +   +  ++
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           +  YAK G L  AR +F  +PE+  V W  ++ G  +A R  +A+  F +M   G+ P  
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK------- 365
               + LS+C+   A   G  +H F+ K   +  V +  +++ MY KCG+          
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223

Query: 366 ------------------------ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
                                   AL +F  M ER+ +++ AII G   +G    A+ +F
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283

Query: 402 SEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL- 459
           S M+    M PDE T   +LSAC +  ++  G+    QM S + L   + + S +++ L 
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGK----QMHS-YILRTGMPYSSQIMNALI 338

Query: 460 ---GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
               +SG +E A +++    + AD+ V   + F   L G V +G+
Sbjct: 339 STYAKSGSVETARRIM-DKAVVADLNV---ISFTALLEGYVKLGD 379


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 292/510 (57%), Gaps = 34/510 (6%)

Query: 77   PDNFTYPLLFKVCASLG--LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            P + T P+  K  + L   LR  G ++    LKL    + +V  +++ ++  CG L  A 
Sbjct: 547  PSHLTIPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 605

Query: 135  NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             VFDE    + V W +LI  ++ +G  REA+ + R+     + PD  T + +++ACA++ 
Sbjct: 606  RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 195  DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            DL  G  +     + G+  +V +A A +D+YVKCG++  A                    
Sbjct: 666  DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKA-------------------- 705

Query: 255  GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                       R++FD +  K  V W A++GGY      +EAL LF  MQA G+KPD   
Sbjct: 706  -----------REVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYA 754

Query: 315  TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
                LSAC++LGALD G    R ++ + F  N VLGTAL+DMYAKCG+  +A  VF +M 
Sbjct: 755  VAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR 814

Query: 375  ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            +++ + + A+I GL + G    A +   +M   G+  ++ TF+G+L +C H GL+ +GR+
Sbjct: 815  KKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 874

Query: 435  YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
            YF  M+ ++ +SP+++HY CMVDLL R+GLL+EA QL+  MPM A+ V+ GAL   C++H
Sbjct: 875  YFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIH 934

Query: 495  GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
             N  + E    +L+ L+P +SG YV+L+N+Y +   WE+A K+R  M+ +GVEK P CS 
Sbjct: 935  RNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSW 994

Query: 555  IEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            +E  G ++EF V DKSHP  +QIY  L +L
Sbjct: 995  VEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1024



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 172/366 (46%), Gaps = 34/366 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L    ++   + +P++  W   I  +++ G +REAV + +    NG  RPD+FT   +  
Sbjct: 601 LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAVRVLT 659

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G  ++    + G    ++V  A + ++V CG++  A  VFD+   ++ V+
Sbjct: 660 ACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA 719

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+  +G PREA+ LF  MQ E ++PD   + G +SAC +L  L+LGR+    + 
Sbjct: 720 WGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVD 779

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                    L  AL+DMY KCG    A  +F  M  K ++                    
Sbjct: 780 WDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV------------------- 820

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA+I G       K A AL  +M+ +G+K +  T +  L +C+  G 
Sbjct: 821 ------------WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGL 868

Query: 328 LDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           + DG  + H   +  + +  +     +VD+ ++ G + +A Q+  +MP   N++   A++
Sbjct: 869 IQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALL 928

Query: 386 GGLALH 391
           GG  +H
Sbjct: 929 GGCKIH 934



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 137/317 (43%), Gaps = 27/317 (8%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A S  +A  A+    +   +    ++   +++ ++ +W   + G+   G  REA+DL+
Sbjct: 681 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 740

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN-----AVI 121
             M +  G +PD +        C  LG   LG +    V     D D ++ N     A+I
Sbjct: 741 LAM-QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMV-----DWDEFLDNPVLGTALI 794

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG    A  VF +   ++++ WN++I G   +G  + A  L   M+   V+ ++ 
Sbjct: 795 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 854

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T IG++ +C     +  GR   H       ++  +     ++D+  + G L+ A ++ D 
Sbjct: 855 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDD 914

Query: 241 M-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK-------R 292
           M +    V    ++ G       ++A  +   L    + PWN+  G YV          R
Sbjct: 915 MPMPANAVILGALLGGCKIHRNTELAEHVLKQL--ILLEPWNS--GNYVMLSNIYSNRGR 970

Query: 293 SKEALALFHEMQATGIK 309
            ++A  L  +M+A G++
Sbjct: 971 WEDAAKLRLDMKAKGVE 987


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 291/510 (57%), Gaps = 33/510 (6%)

Query: 77  PDNFTYPLLFKVCASLGLRFL-GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           P + T+P   K  + L      G ++    LKL    + +V  ++++++  CG L  A  
Sbjct: 72  PSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQK 131

Query: 136 VFDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            FDE     + VSW +LI  ++ +G   EAI + R      V PD  T + +++ACA++ 
Sbjct: 132 AFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVA 191

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           DL  G E+     + G+   V +A A +D+YVKCG++                       
Sbjct: 192 DLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEM----------------------- 228

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                   D AR +FD +  K VV W A++GGY      +EAL LF  MQ  G++PD  T
Sbjct: 229 --------DKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYT 280

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               LSAC++LGALD G  +   ++ +    N VLGTAL+DMYAKCG+  +A  VF +M 
Sbjct: 281 VAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMR 340

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            R+ + + A+I GL + G    A +   +M   G+  ++ TF+G+L +C H GLV +GR+
Sbjct: 341 NRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRR 400

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M+ ++ + P+++HY  MVDLL R+GLL+EA QLI+ MPM A+ VVWGAL   C++H
Sbjct: 401 YFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIH 460

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            N  + E    +L++L+P +SG YV+L+N+Y +S  WE+A K+R  M+ +GVEK P  S 
Sbjct: 461 RNADLAEHVLKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSW 520

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +E++G ++EF V DKSHP  +QIY  L +L
Sbjct: 521 VELDGKVHEFHVGDKSHPLSDQIYAKLDEL 550



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 39  QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
           Q P++ SW   I  +++ G+  EA+ + +    +G  RPD+FT   +   CA +     G
Sbjct: 138 QPPSTVSWTALITAYMDAGRGLEAIGVARSAFASG-VRPDSFTAVRVLTACARVADLVTG 196

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
            E++    K G   +++V  A + ++V CG++  A  VFD+   +++V+W +++ G+  +
Sbjct: 197 EEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASN 256

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G PREA+ LF  MQ+E + PD  T+ G +SAC +L  L+LGR +   +    +     L 
Sbjct: 257 GHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLG 316

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
            AL+DMY KCG    A  +F  M N+ ++                               
Sbjct: 317 TALIDMYAKCGSTGEAWMVFQKMRNRDIIV------------------------------ 346

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRF 337
            WNA+I G       K A AL  +M+ +G+  +  T +  L +C+  G + DG  +    
Sbjct: 347 -WNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNM 405

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALD 396
            +  +    +     +VD+ ++ G + +A Q+  +MP E N++ + A++GG  +H  A  
Sbjct: 406 TQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADL 465

Query: 397 AISYFSEMI 405
           A     ++I
Sbjct: 466 AEHVLKQLI 474



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 137/312 (43%), Gaps = 17/312 (5%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A +  +A  A+    +   +D    +   ++N +  +W   + G+   G  REA++L+
Sbjct: 207 GIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELF 266

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
             M +  G RPD +T       C  LG   LG  + G +       +  +  A+I ++  
Sbjct: 267 FAM-QVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAK 325

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
           CG  G A  VF +   R+++ WN++I G   +G  + A  L   M+   +  ++ T IG+
Sbjct: 326 CGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGL 385

Query: 187 VSACAQLEDLNLGREIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNK 244
           + +C     +  GR     +++   +   +     ++D+  + G L+ A ++   M +  
Sbjct: 386 LCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEA 445

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKRSKEAL 297
             V    ++ G       D+A  +   L +  + PWN+  G YV        + R ++A 
Sbjct: 446 NAVVWGALLGGCKIHRNADLAEHVLKQLIQ--LEPWNS--GNYVVLSNIYSNSGRWEDAA 501

Query: 298 ALFHEMQATGIK 309
            L  EM+A G++
Sbjct: 502 KLRLEMKAKGVE 513


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 292/510 (57%), Gaps = 34/510 (6%)

Query: 77   PDNFTYPLLFKVCASLG--LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            P + T P+  K  + L   LR  G ++    LKL    + +V  +++ ++  CG L  A 
Sbjct: 523  PSHLTIPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 581

Query: 135  NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             VFDE    + V W +LI  ++ +G  REA+ + R+     + PD  T + +++ACA++ 
Sbjct: 582  RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 195  DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            DL  G  +     + G+  +V +A A +D+YVKCG++  A                    
Sbjct: 642  DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKA-------------------- 681

Query: 255  GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                       R++FD +  K  V W A++GGY      +EAL LF  MQA G+KPD   
Sbjct: 682  -----------REVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYA 730

Query: 315  TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
                LSAC++LGALD G    R ++ + F  N VLGTAL+DMYAKCG+  +A  VF +M 
Sbjct: 731  VAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR 790

Query: 375  ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            +++ + + A+I GL + G    A +   +M   G+  ++ TF+G+L +C H GL+ +GR+
Sbjct: 791  KKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 850

Query: 435  YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
            YF  M+ ++ +SP+++HY CMVDLL R+GLL+EA QL+  MPM A+ V+ GAL   C++H
Sbjct: 851  YFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIH 910

Query: 495  GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
             N  + E    +L+ L+P +SG YV+L+N+Y +   WE+A K+R  M+ +GVEK P CS 
Sbjct: 911  RNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSW 970

Query: 555  IEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            +E  G ++EF V DKSHP  +QIY  L +L
Sbjct: 971  VEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1000



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 172/366 (46%), Gaps = 34/366 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L    ++   + +P++  W   I  +++ G +REAV + +    NG  RPD+FT   +  
Sbjct: 577 LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAVRVLT 635

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA +     G  ++    + G    ++V  A + ++V CG++  A  VFD+   ++ V+
Sbjct: 636 ACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA 695

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+  +G PREA+ LF  MQ E ++PD   + G +SAC +L  L+LGR+    + 
Sbjct: 696 WGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVD 755

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
                    L  AL+DMY KCG    A  +F  M  K ++                    
Sbjct: 756 WDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV------------------- 796

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                       WNA+I G       K A AL  +M+ +G+K +  T +  L +C+  G 
Sbjct: 797 ------------WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGL 844

Query: 328 LDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAII 385
           + DG  + H   +  + +  +     +VD+ ++ G + +A Q+  +MP   N++   A++
Sbjct: 845 IQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALL 904

Query: 386 GGLALH 391
           GG  +H
Sbjct: 905 GGCKIH 910



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 137/317 (43%), Gaps = 27/317 (8%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A S  +A  A+    +   +    ++   +++ ++ +W   + G+   G  REA+DL+
Sbjct: 657 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 716

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN-----AVI 121
             M +  G +PD +        C  LG   LG +    V     D D ++ N     A+I
Sbjct: 717 LAM-QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMV-----DWDEFLDNPVLGTALI 770

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG    A  VF +   ++++ WN++I G   +G  + A  L   M+   V+ ++ 
Sbjct: 771 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 830

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T IG++ +C     +  GR   H       ++  +     ++D+  + G L+ A ++ D 
Sbjct: 831 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDD 890

Query: 241 M-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK-------R 292
           M +    V    ++ G       ++A  +   L    + PWN+  G YV          R
Sbjct: 891 MPMPANAVILGALLGGCKIHRNTELAEHVLKQL--ILLEPWNS--GNYVMLSNIYSNRGR 946

Query: 293 SKEALALFHEMQATGIK 309
            ++A  L  +M+A G++
Sbjct: 947 WEDAAKLRLDMKAKGVE 963


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 311/564 (55%), Gaps = 53/564 (9%)

Query: 1   MTITGLISHGFAPSRLIAFCAI-SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  + +I +    SRLI FC    E+ NL Y   +  ++  P+ + WN  IRG+  +   
Sbjct: 28  MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 87

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            +A+  Y++MLR G + PD FT+P + K C+ L     G  + G V+K GF+V+MYV   
Sbjct: 88  DKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTC 146

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++H+++ CG++     VF++    N+V+W SLI+GFV +    +AI  FR+MQ   V+P+
Sbjct: 147 LLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPN 206

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E  M+ ++ AC        GR    Y  +S     V LA +L+DMY              
Sbjct: 207 ETIMVDLLVAC--------GRCFDPY-CQSKFEFNVILATSLIDMY-------------- 243

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                            AK G +  AR +FD +PE+ +V WN+II GY Q   ++EA+ +
Sbjct: 244 -----------------AKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCM 286

Query: 300 FHEMQATGIKPDAVTTVHCLSA-----CSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           F +M   GI PD VT    + A     CSQLG       IH ++ K  F  +  +  ALV
Sbjct: 287 FSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQT-----IHAYVSKTGFVKDAAIVCALV 341

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDE 413
           +MYAK GN   A ++F ++ +++++ +T +I GLA HG    A+S F  M   G   PD 
Sbjct: 342 NMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDG 401

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           IT+LG+L AC H GLV+EG++YFA+M  ++ L P ++HY CMVD+L R+G  EEAE+L++
Sbjct: 402 ITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVK 461

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           +MP+     +WGAL   C +H N+ + +R    + E +   SGIYVLL+N+Y  +  W +
Sbjct: 462 TMPVQPTANIWGALLNGCEIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWAD 521

Query: 534 AGKVRKMMEERGVEKTPGCSSIEV 557
              +R+ M+ + V+K    SS+E 
Sbjct: 522 VKLIRESMKSKRVDKLLAHSSVET 545


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 312/557 (56%), Gaps = 54/557 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV--CASLGLRFLGYEIF 102
           SW+  +R     G+ +E++ L    LR+GG  P      L   V  CA+L L     +I 
Sbjct: 435 SWSARVRTLTRLGRHKESIAL----LRHGGPSPPPHALALPASVISCAALSLPTGVAQIH 490

Query: 103 GHVLKLGF--DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL------VSWNSLING 154
               K G     D Y+ +A++  +   G L LA  + DE+ + +        ++NSLI+G
Sbjct: 491 ALAAKRGLLPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISG 550

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
             R   P     LFR M+   V  D VT++ +V A      L++  ++H   ++ GL   
Sbjct: 551 CARHSLPVACFALFRRMRAIAVRFDAVTLLALVPAAP----LSVVPQVHALAAQVGLATE 606

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP- 273
             +AN LM  Y + G   +A                             +AR++FD++P 
Sbjct: 607 TSVANCLMSTYARGGAFGAA-----------------------------LARRVFDEMPL 637

Query: 274 -EKYVVPWNAIIGGYVQAKRSKEALALFHEMQA---TGIKPDAVTTVHCLSACSQLGALD 329
             + +V WNA++  + Q   + +AL L+  M++   +G++PDAVT V  LS+ + LGA  
Sbjct: 638 ASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARG 697

Query: 330 DGIWIHRFIEKE--NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            G     ++ +    F  NV L  AL++ +A+CG++ +A Q+F EMP ++ +++TA+I G
Sbjct: 698 VGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITG 757

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
             +HG    A+S F  M+  G+ PD +  +G+LSAC H GL DEGR YF+ M S+++L P
Sbjct: 758 HGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRP 817

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
            L+HY+C+VDLLGR+G LEEA +LI SMPM AD  VWGAL  AC++H NV IGE A  ++
Sbjct: 818 TLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARV 877

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           +EL+P++ G YVL++N+Y D+   +   +VR +M +RG++K PGCS +E NG ++ F+  
Sbjct: 878 VELEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMAD 937

Query: 568 DKSHPELEQIYDCLVQL 584
           D SHP+  +IY+ + +L
Sbjct: 938 DHSHPQARRIYELVTRL 954


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 297/543 (54%), Gaps = 31/543 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +  +WN  + G+   G    AV +  +M    G RPD  T   +   CA         E+
Sbjct: 290 DRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREV 349

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               ++ GFD  + V  A++ V+  CG +  A  VFD    RN VSWN++I G+  +G  
Sbjct: 350 HAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDA 409

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA+ LF+ M  E V+  +V+++  + AC +L  L+ GR +H  +   GL   V + NAL
Sbjct: 410 TEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNAL 469

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + MY KC +                                D+A ++FD+L  K  V WN
Sbjct: 470 ITMYCKCKRT-------------------------------DLAAQVFDELGYKTRVSWN 498

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G  Q   S++A+ LF  MQ   +KPD+ T V  + A + +       WIH +  + 
Sbjct: 499 AMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRL 558

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           + + +V + TAL+DMYAKCG ++ A  +F+   +R+ +T+ A+I G   HG    A+  F
Sbjct: 559 HLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELF 618

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM   G +P+E TFL +LSAC H GLVDEG++YF+ M   + L P ++HY  MVDLLGR
Sbjct: 619 EEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGR 678

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L EA   I+ MPM   + V+GA+  AC+LH NV + E +A ++ EL+P++   +VLL
Sbjct: 679 AGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLL 738

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y ++++W++  +VR  ME++G++KTPG S +++   ++ F     +H + + IY  L
Sbjct: 739 ANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARL 798

Query: 582 VQL 584
            +L
Sbjct: 799 AKL 801



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 180/368 (48%), Gaps = 38/368 (10%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   +Q+ NS SWN  I+G+ E G   EA+ L+K+M+  G    D      L  
Sbjct: 378 VDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH- 436

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C  LG    G  +   ++++G + ++ V NA+I ++  C    LA  VFDE   +  VS
Sbjct: 437 ACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVS 496

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I G  ++G   +A+RLF  MQLE V+PD  T++ ++ A A + D    R IH Y  
Sbjct: 497 WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSI 556

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
              L   V +  AL+DMY KCG++  A  +F+S  ++ V++   MI GY   G       
Sbjct: 557 RLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHG------- 609

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                     K A+ LF EM+++G  P+  T +  LSACS  G 
Sbjct: 610 ------------------------SGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGL 645

Query: 328 LDDGIWIHRFIEKENFNLNVVL---GTALVDMYAKCGNIAKALQVFHEMPERNSLT-YTA 383
           +D+G      + KE++ L   +   GT +VD+  + G + +A     +MP    ++ Y A
Sbjct: 646 VDEGQEYFSSM-KEDYGLEPGMEHYGT-MVDLLGRAGKLHEAWSFIQKMPMEPGISVYGA 703

Query: 384 IIGGLALH 391
           ++G   LH
Sbjct: 704 MLGACKLH 711



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 34/333 (10%)

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++  CA   DL  GR +H  ++  GL+     A AL +MY KC +   A  +FD M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             +  V+   ++ GYA+ G  +                  A +G  V+ +          
Sbjct: 287 PARDRVAWNALVAGYARNGLAE------------------AAVGMVVRMQ---------- 318

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
             +  G +PDAVT V  L AC+   AL     +H F  +  F+  V + TA++D+Y KCG
Sbjct: 319 --EEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCG 376

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            +  A +VF  M +RNS+++ A+I G A +G A +A++ F  M+G G+   +++ L  L 
Sbjct: 377 AVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH 436

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G +DEGR+    +  I  L   +   + ++ +  +    + A Q+   +      
Sbjct: 437 ACGELGFLDEGRRVHELLVRIG-LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR- 494

Query: 482 VVWGALFFACRLHGNVSIGER--AAMKLLELDP 512
           V W A+   C  +G+     R  + M+L  + P
Sbjct: 495 VSWNAMILGCTQNGSSEDAVRLFSRMQLENVKP 527


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/494 (38%), Positives = 290/494 (58%), Gaps = 12/494 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV-----RNLVSWNSLING 154
           +I GHVL+ G D   Y+   +I        LG+  + +    +     RN   W ++I G
Sbjct: 68  QIHGHVLRKGLDQSCYILTKLIRTLTK---LGVPMDPYPRRVIEPVQFRNPFLWTAVIRG 124

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           +   G   EAI ++  M+ E + P   T   ++ AC  + DLNLGR+ H           
Sbjct: 125 YTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCF 184

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V + N ++DMYVKCG +  A ++FD M  + V+S T +I  YA+ G ++ A  +F+ LP 
Sbjct: 185 VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPT 244

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +V W A++ G+ Q  + +EAL  F  M+ +GI+ D VT    +SAC+QLGA       
Sbjct: 245 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 304

Query: 335 HRFIEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +  +K  ++   +VV+G+AL+DMY+KCGN+ +A+ VF  M  +N  +Y+++I GLA HG
Sbjct: 305 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHG 364

Query: 393 KALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           +A +A+  F  M+    + P+ +TF+G L+AC H GLVD+GR+ FA M   F + P   H
Sbjct: 365 RAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDH 424

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y+CMVDLLGR+G L+EA +LI++M +     VWGAL  ACR+H N  I E AA  L EL+
Sbjct: 425 YTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELE 484

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS-SIEVNGLLYEFIVRDKS 570
           P   G Y+LL+N+Y  +  W     VRK+++E+G++KTP  S  ++ NG +++F   + +
Sbjct: 485 PDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLN 544

Query: 571 HPELEQIYDCLVQL 584
           HP  ++I D L +L
Sbjct: 545 HPMSKKIQDKLEEL 558



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 180/399 (45%), Gaps = 70/399 (17%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y  +++  VQ  N F W   IRG+   GK  EA+ +Y  M R     P +FT+  L K C
Sbjct: 102 YPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCM-RKEEITPVSFTFSALLKAC 160

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
            S+G   LG +      +L     +YV N +I ++V CG +  A  VFDE   R+++SW 
Sbjct: 161 GSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWT 220

Query: 150 SLI-------------------------------NGFVRSGFPREAIRLFRDMQLERVEP 178
            LI                                GF ++  P+EA+  F  M+   +  
Sbjct: 221 ELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRA 280

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT--VPLANALMDMYVKCGKLESAEE 236
           DEVT+ G +SACAQL              +SG + +  V + +AL+DMY KCG +E A  
Sbjct: 281 DEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVN 340

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F SM NK V S ++MI+G A  G                               R++EA
Sbjct: 341 VFVSMNNKNVFSYSSMILGLATHG-------------------------------RAQEA 369

Query: 297 LALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TAL 353
           L LFH M   T IKP+ VT V  L+ACS  G +D G  +   +  + F +       T +
Sbjct: 370 LDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASM-YQTFGVEPTRDHYTCM 428

Query: 354 VDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           VD+  + G + +AL++   M  E +   + A++G   +H
Sbjct: 429 VDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIH 467



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 140/353 (39%), Gaps = 72/353 (20%)

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E+ +  ++S      +LN  ++IH ++   GL  +  +   L+    K G          
Sbjct: 47  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLG---------- 96

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                     R++ + +  +    W A+I GY    +  EA+A+
Sbjct: 97  -------------------VPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAM 137

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN----VVLGTALVD 355
           +  M+   I P + T    L AC  +G L+ G   H     + F L     V +G  ++D
Sbjct: 138 YGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFH----AQTFRLRGFCFVYVGNTMID 193

Query: 356 MYAKCGNIAKALQVFHEMPERNSLT-------------------------------YTAI 384
           MY KCG+I  A +VF EMPER+ ++                               +TA+
Sbjct: 194 MYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAM 253

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK--YFAQMSSI 442
           + G A + K  +A+ YF  M   G+  DE+T  G +SAC   G      +    AQ S  
Sbjct: 254 VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSG- 312

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +  S  +   S ++D+  + G +EEA  +  SM    +V  + ++      HG
Sbjct: 313 YSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMN-NKNVFSYSSMILGLATHG 364



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           + LIA  A +   N++    +  ++   +  +W   + GF +  K +EA++ + +M ++ 
Sbjct: 220 TELIA--AYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKS- 276

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV--HNAVIHVFVSCGDLG 131
           G R D  T       CA LG             K G+    +V   +A+I ++  CG++ 
Sbjct: 277 GIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVE 336

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSAC 190
            A NVF     +N+ S++S+I G    G  +EA+ LF  M  +  ++P+ VT +G ++AC
Sbjct: 337 EAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTAC 396

Query: 191 AQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +    ++ GR++   + ++ G+  T      ++D+  + G+L+ A E+  +M
Sbjct: 397 SHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTM 448


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 328/601 (54%), Gaps = 44/601 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S  L     +   +   +  SW V + G    G+  EA+ ++  M+ +G + P  FT 
Sbjct: 107 AKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS-PTQFTL 165

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD------------- 129
             +   CA+   R +G ++   V+KLG    + V N+V++++  CGD             
Sbjct: 166 TNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPE 225

Query: 130 ------------------LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF-RD 170
                             + LA ++F+    R +VSWN++I G+ ++G   +A+  F R 
Sbjct: 226 RSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRM 285

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           +    + PDE T+  ++SACA L  +++G+++H YI  S +     + NAL+ MY K G 
Sbjct: 286 LSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGS 345

Query: 231 LESAEEIFDS--MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           +E+A  +     M +  V+S T ++ GY K G +  AR++FD +  + VV W A+I GY 
Sbjct: 346 VENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYE 405

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH----RFIEKENFN 344
           Q   + EA+ LF  M  +G +P++ T    LS C+ L  L+ G  IH    R +++++ +
Sbjct: 406 QNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSS 465

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGGLALHGKALDAISYFSE 403
           ++     ++V MYA+ G++  A +VF  +  R  ++T+T++I  LA HG   DA+  F E
Sbjct: 466 VS----NSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEE 521

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+ VG+ PD ITF+G+LSAC H G VDEG++YF Q+     + P++ HY+CMVDLL R+G
Sbjct: 522 MLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAG 581

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           L  EA++ I+ MP+  D + WG+L  ACR+H N  + E AA KLL +DP +SG Y  L+N
Sbjct: 582 LFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSN 641

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           +Y     W +A K+ K  +++ V+K  G S   +   ++ F   D  HP+ + +Y    +
Sbjct: 642 VYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAK 701

Query: 584 L 584
           +
Sbjct: 702 M 702



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 214/426 (50%), Gaps = 40/426 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +++  N+++ ++   G L  A  VF E   R+ VSW  ++ G  R G   EAI++F DM 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            + + P + T+  ++S+CA  E   +GR++H ++ + GL+  VP+AN++++MY KCG  E
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M  ++V S   M+   A  G +D+A  +F+++P++ +V WNA+I GY Q   
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274

Query: 293 SKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-------- 343
           + +AL  F  M + + + PD  T    LSAC+ LG +  G  +H +I +           
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN 334

Query: 344 -------------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
                                    +LNV+  TAL++ Y K G++  A ++F  M  R+ 
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDV 394

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + +TA+I G   +G   +A+  F  MI  G  P+  T   +LS C     ++ G++   +
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCK 454

Query: 439 MSSIFRLSPKLKHYS-CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
             +I  L  +    S  +V +  RSG L  A ++   +    + V W ++  A   HG  
Sbjct: 455 --AIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG-- 510

Query: 498 SIGERA 503
            +GE A
Sbjct: 511 -LGEDA 515



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 54/407 (13%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK-----LESAEEIFDS 240
           ++  C    +   GR IH    ++GL  +  L N L+  Y             A  +FD 
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 241 M--VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           +    + V +  +++  YAK G L  AR +F ++PE+  V W  ++ G  +  R  EA+ 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           +F +M   G+ P   T  + LS+C+   A   G  +H F+ K   +  V +  ++++MY 
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208

Query: 359 KCGNIAKALQVFHEMPERNS-------------------------------LTYTAIIGG 387
           KCG+   A  VF  MPER+                                +++ A+I G
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268

Query: 388 LALHGKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
              +G    A+ +FS M+    M PDE T   +LSAC + G+V  G++  A     + L 
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA-----YILR 323

Query: 447 PKLKH----YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE- 501
            ++ +     + ++ +  +SG +E A  +++   M AD+ V   + F   L G V +G+ 
Sbjct: 324 SRMPYIGQVTNALISMYAKSGSVENARGVMQQAVM-ADLNV---ISFTALLEGYVKLGDM 379

Query: 502 RAAMKLLE-LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           + A ++ + +  +D   +  +   Y  +   +EA ++ ++M   G E
Sbjct: 380 KHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPE 426


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/588 (34%), Positives = 322/588 (54%), Gaps = 46/588 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M    ++S+    S    F  +SE+       K+       +  SWN+ + G ++  K+ 
Sbjct: 76  MPQPSVVSYNTILSGYFKFGLVSEA------IKLFDGTSKRDCHSWNIVLSGCVKNHKLG 129

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           E +  + +M R    RPDNFTY ++   C  LG    G ++   ++K+  D+D ++   +
Sbjct: 130 EGLTHFMKM-RCSSVRPDNFTYAIIIP-CCDLGF---GQQVHADIVKVCSDLDAFIGTNL 184

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++   G++G A  VFD    R LV+WN++I+ + + G   ++I LFR +  E +  DE
Sbjct: 185 LRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADE 244

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T   +++  A    +    ++H  I E G        NAL+++Y KCG + SA      
Sbjct: 245 YTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASAS----- 299

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                     ++F+++P++ VV W  II G++Q+   +EA+ LF
Sbjct: 300 --------------------------RLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLF 333

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-NLNVVLGTALVDMYAK 359
           ++MQ   I+P++ T    L AC+   A   G   H  + K      +VV+G+A+VDMY+K
Sbjct: 334 YQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSK 393

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG---LMPDEITF 416
           CG +  AL+ F EMPER+  ++  II G A +G  + A+  ++EM+ +G   + P+E+TF
Sbjct: 394 CGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTF 453

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           +G+L AC H GL+ EG  YF +M     + P  +HY+CMVDLLGR+GLL+EAE LI ++P
Sbjct: 454 VGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALP 513

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  D V+WGAL  AC+LHG+V +  R A  L   +P++S  YVLLAN Y D   W EA +
Sbjct: 514 IKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAVE 573

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +R++ME RGVEKT GCS +E+   ++ F+  D  HP++E     L +L
Sbjct: 574 IREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLHPQIEVASQVLPRL 621



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 6/283 (2%)

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H  + ++GL   V   N L+  Y+    L  A ++   M   +VVS  T++ GY KFG 
Sbjct: 37  LHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGL 96

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +  A K+FD   ++    WN ++ G V+  +  E L  F +M+ + ++PD  T    +  
Sbjct: 97  VSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPC 156

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C     L  G  +H  I K   +L+  +GT L+ MYA+ G I  A +VF  MP R  +T+
Sbjct: 157 CD----LGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTW 212

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            A+I   + +G+   +I  F ++   G+  DE T+  +L+       V E  +  + +  
Sbjct: 213 NAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIE 272

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
               S +  + + +V+L  + G +  A +L   +P   DVV W
Sbjct: 273 RGFCSDRFTN-NALVNLYSKCGYVASASRLFEEIP-DQDVVSW 313


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/434 (40%), Positives = 265/434 (61%), Gaps = 5/434 (1%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR----EIHW 204
           N+LI     S  P  A+ L+  +      P   T+  ++ + A    +   R     +H 
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 205 YISESGLTLTVPLANALMDMYVKC-GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           +  + GL   + ++NAL+ ++    G+L  A  +  +  +    +  T+I  YA+ G + 
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            AR +FD++P +  V W+A++ GYVQA   +EAL LF  MQA G++PD    V  L+AC+
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           QLG L+ G W+H +++  N  + V LGTALVDMYAKCG +  A++VF  M E+N L +T 
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GLA+HG+  +A+  FS+M  +G+ PD+I F+G L AC H GLVD+GR+ F  M   +
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + PK++HY CMVDLL R+GLL EA +++  MPM  D ++WGAL   CR H NV + E  
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
               +EL+P  SG YVLL N+Y  S     A ++R +M E+GV+KTPGCS++E+ G++++
Sbjct: 535 VKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQ 594

Query: 564 FIVRDKSHPELEQI 577
           FIV D SHP +E+I
Sbjct: 595 FIVGDLSHPFIEEI 608



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 175/383 (45%), Gaps = 70/383 (18%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA----SLGLRFLGYEIF 102
           N  IR    + +   A+ LY  +LR  G  P   T P L K  A      G R L   + 
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLR-AGHHPTPHTLPSLLKSLALSPAVPGARGLALAVH 233

Query: 103 GHVLKLGF--------------------------------DVDMYVHNAVIHVFVSCGDL 130
            H +KLG                                  VD    N +I  +   G +
Sbjct: 234 AHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRV 293

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FDE   RN VSW++++NG+V++G  REA+ LF  MQ + V PD+  ++G+++AC
Sbjct: 294 TDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAAC 353

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           AQL  L  G+ +H Y+  + + +TV L  AL+DMY KCG+++ A E+F  M  K V++ T
Sbjct: 354 AQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWT 413

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           TMI G A  G                               R  EAL LF +M+  G+KP
Sbjct: 414 TMIKGLAMHG-------------------------------RGSEALELFSQMERLGVKP 442

Query: 311 DAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           D +  +  L AC+  G +D G  +    + K      +     +VD+ A+ G + +A ++
Sbjct: 443 DDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREM 502

Query: 370 FHEMPER-NSLTYTAIIGGLALH 391
             +MP + ++L + A++ G   H
Sbjct: 503 VEKMPMKPDALIWGALMAGCRFH 525



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SW+  + G+++ G  REA+ L+ +M  +G  RPD+     +   CA LG+   G  +
Sbjct: 307 NAVSWSAMVNGYVQAGDGREALGLFARMQADG-VRPDDTVLVGVLAACAQLGVLEQGKWV 365

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G++      + +++  A++ ++  CG++ LA  VF     +N+++W ++I G    G  
Sbjct: 366 HGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRG 425

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANA 220
            EA+ LF  M+   V+PD++  IG + AC     ++ GRE+    + + G+   +     
Sbjct: 426 SEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGC 485

Query: 221 LMDMYVKCGKLESAEEIFDSMVNK 244
           ++D+  + G L  A E+ + M  K
Sbjct: 486 MVDLLARNGLLNEAREMVEKMPMK 509



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 44/246 (17%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           ++  N  +W   I+G    G+  EA++L+ QM R  G +PD+  +      C   GL   
Sbjct: 404 MKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERL-GVKPDDIAFIGALCACTHTGLVDK 462

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G E+F  +++                       G+   +    C+ +L++ N L+N    
Sbjct: 463 GRELFDSMVR---------------------KYGIKPKIEHYGCMVDLLARNGLLN---- 497

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI--HWYISESGLTLTV 215
                EA  +   M +   +PD +    +++ C   +++ L   +  HW   E   +   
Sbjct: 498 -----EAREMVEKMPM---KPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAY 549

Query: 216 PLANALMDMYVKCGKLESAEEIFDSM----VNKTVVSCTTMIVGY-AKFGFLDIARKIFD 270
            L   L ++Y   G+  SA EI   M    V+KT    T  I G   +F   D++    +
Sbjct: 550 VL---LGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIE 606

Query: 271 DLPEKY 276
           ++  K+
Sbjct: 607 EILSKW 612


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/434 (40%), Positives = 265/434 (61%), Gaps = 5/434 (1%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL----NLGREIHW 204
           N+LI     S  P  A+ L+  +      P   T+  ++ + A    +     L   +H 
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 205 YISESGLTLTVPLANALMDMYVKC-GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           +  + GL   + ++NAL+ ++    G+L  A  +  +  +    +  T+I  YA+ G + 
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            AR +FD++P +  V W+A++ GYVQA   +EAL LF  MQA G++PD    V  L+AC+
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           QLG L+ G W+H +++  N  + V LGTALVDMYAKCG +  A++VF  M E+N L +T 
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GLA+HG+  +A+  FS+M  +G+ PD+I F+G L AC H GLVD+GR+ F  M   +
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + PK++HY CMVDLL R+GLL EA +++  MPM  D ++WGAL   CR H NV + E  
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
               +EL+P  SG YVLL N+Y  S     A ++R +M E+GV+KTPGCS++E+ G++++
Sbjct: 535 VKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQ 594

Query: 564 FIVRDKSHPELEQI 577
           FIV D SHP +E+I
Sbjct: 595 FIVGDLSHPFIEEI 608



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 175/383 (45%), Gaps = 70/383 (18%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA----SLGLRFLGYEIF 102
           N  IR    + +   A+ LY  +LR  G  P   T P L K  A      G R L   + 
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLR-AGHHPTPHTLPSLLKSLALSPAVPGARGLALAVH 233

Query: 103 GHVLKLGF--------------------------------DVDMYVHNAVIHVFVSCGDL 130
            H +KLG                                  VD    N +I  +   G +
Sbjct: 234 AHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRV 293

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FDE   RN VSW++++NG+V++G  REA+ LF  MQ + V PD+  ++G+++AC
Sbjct: 294 TDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAAC 353

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           AQL  L  G+ +H Y+  + + +TV L  AL+DMY KCG+++ A E+F  M  K V++ T
Sbjct: 354 AQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWT 413

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           TMI G A  G                               R  EAL LF +M+  G+KP
Sbjct: 414 TMIKGLAMHG-------------------------------RGSEALELFSQMERLGVKP 442

Query: 311 DAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           D +  +  L AC+  G +D G  +    + K      +     +VD+ A+ G + +A ++
Sbjct: 443 DDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREM 502

Query: 370 FHEMPER-NSLTYTAIIGGLALH 391
             +MP + ++L + A++ G   H
Sbjct: 503 VEKMPMKPDALIWGALMAGCRFH 525



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SW+  + G+++ G  REA+ L+ +M +  G RPD+     +   CA LG+   G  +
Sbjct: 307 NAVSWSAMVNGYVQAGDGREALGLFARM-QADGVRPDDTVLVGVLAACAQLGVLEQGKWV 365

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G++      + +++  A++ ++  CG++ LA  VF     +N+++W ++I G    G  
Sbjct: 366 HGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRG 425

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANA 220
            EA+ LF  M+   V+PD++  IG + AC     ++ GRE+    + + G+   +     
Sbjct: 426 SEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGC 485

Query: 221 LMDMYVKCGKLESAEEIFDSMVNK 244
           ++D+  + G L  A E+ + M  K
Sbjct: 486 MVDLLARNGLLNEAREMVEKMPMK 509



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 44/246 (17%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           ++  N  +W   I+G    G+  EA++L+ QM R  G +PD+  +      C   GL   
Sbjct: 404 MKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERL-GVKPDDIAFIGALCACTHTGLVDK 462

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G E+F  +++                       G+   +    C+ +L++ N L+N    
Sbjct: 463 GRELFDSMVR---------------------KYGIKPKIEHYGCMVDLLARNGLLN---- 497

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI--HWYISESGLTLTV 215
                EA  +   M +   +PD +    +++ C   +++ L   +  HW   E   +   
Sbjct: 498 -----EAREMVEKMPM---KPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAY 549

Query: 216 PLANALMDMYVKCGKLESAEEIFDSM----VNKTVVSCTTMIVGY-AKFGFLDIARKIFD 270
            L   L ++Y   G+  SA EI   M    V+KT    T  I G   +F   D++    +
Sbjct: 550 VL---LGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIE 606

Query: 271 DLPEKY 276
           ++  K+
Sbjct: 607 EILSKW 612


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 308/586 (52%), Gaps = 72/586 (12%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLR 95
           N+ +P  F WN+ I  ++  G  ++A+  YKQM++ G  RPDNFTYP + K C   L L 
Sbjct: 236 NILHP--FPWNLLISSYVRNGFCQKALSAYKQMVKKG-IRPDNFTYPSVLKACGEELDLG 292

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F G E+   +        + VHNA+I ++  CG +G+A ++FD+   R+ VSWNS+I+ +
Sbjct: 293 F-GKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVY 351

Query: 156 VRSGFPREAIRLFRDMQLERVEP-----------------------------------DE 180
              G   EA  LF  M  E +E                                    D 
Sbjct: 352 ASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDS 411

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           V +I  + AC+ + D  LG+EIH +   S       + N+L+ MY +C  L+ A  +F  
Sbjct: 412 VALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQL 471

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K+++S                               WN+II G     RS+EA  L 
Sbjct: 472 MEAKSLIS-------------------------------WNSIISGCCHMDRSEEASFLL 500

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMYAK 359
            EM  +GI+P+ VT    L  C+++  L  G   H ++  +E+F  +++L  ALVDMYA+
Sbjct: 501 REMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYAR 560

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
            G + +A +VF  + ER+ +TYT++I G  + G+   A+  F EM    + PD IT + +
Sbjct: 561 SGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAV 620

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSAC H GLV +G+  F +M S++ L+P L+H++CM DL GR+GLL +A+++IR+MP   
Sbjct: 621 LSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKP 680

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              +W  L  ACR+H N  IGE AA KLLE+ P++ G YVL+ANMY  +  W +  KVR 
Sbjct: 681 TPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRX 740

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            M + GV K PGC+ ++V      F+V D S+   ++IY  L  LT
Sbjct: 741 FMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLT 786



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 228/470 (48%), Gaps = 14/470 (2%)

Query: 48  VAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPL--LFKVCASLGLRFLGYEIFGH 104
            +++ F   G + +A      + L       D   +P+  L   C  +     G ++ GH
Sbjct: 140 TSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGH 199

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRSGFPRE 163
           ++ LGF+    +   ++  F S  +L +  +V  E S + +   WN LI+ +VR+GF ++
Sbjct: 200 IISLGFEQHPILVPKLV-TFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQK 258

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+  ++ M  + + PD  T   ++ AC +  DL  G+E+H  I+ S +  ++ + NAL+ 
Sbjct: 259 ALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALIS 318

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL----PEKYVVP 279
           MY KCGK+  A ++FD +  +  VS  +MI  YA  G  + A ++F  +     E  ++ 
Sbjct: 319 MYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 378

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN I GGY++    K AL L  +M+  G   D+V  +  L ACS +G    G  IH F  
Sbjct: 379 WNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 438

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +  F     +  +L+ MY++C ++  A  +F  M  ++ +++ +II G     ++ +A  
Sbjct: 439 RSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASF 498

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
              EM+  G+ P+ +T   +L  C     +  G+++   M+        L  ++ +VD+ 
Sbjct: 499 LLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 558

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
            RSG + EA ++   M    D + + ++     + G      +AA+KL E
Sbjct: 559 ARSGKVLEARRVF-DMLGERDKMTYTSMIAGYGMQGE----GQAALKLFE 603



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 5/236 (2%)

Query: 23  SESKNLDYCTKILFNVQNPNSF-SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           S  K+L +   +LF +    S  SWN  I G     +  EA  L ++ML + G  P+  T
Sbjct: 457 SRCKDLKH-AYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLS-GIEPNYVT 514

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
              +  +CA +     G E   ++ +   F   + + NA++ ++   G +  A  VFD  
Sbjct: 515 IASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDML 574

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R+ +++ S+I G+   G  + A++LF +M   +++PD +TMI ++SAC+    +  G+
Sbjct: 575 GERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQ 634

Query: 201 EIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            +   + S  GLT  +     + D++ + G L  A+EI  +M  K   +    ++G
Sbjct: 635 LLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIG 690


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 308/557 (55%), Gaps = 51/557 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGG------TRPDNFTYPLLFKVCA----SLGL 94
           SW   I  +   G + EA   + +M    G         D  +   L   CA    S  L
Sbjct: 122 SWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCL 181

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLI 152
           R  G  + G V+K GF V  ++ N+++H++ +C D+G A  VF+   +  R++VSWNSLI
Sbjct: 182 R-RGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 153 NGFVRSGFPREAIRLFRDMQLE---RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           +GF  +G    A+R F DM  E    VEP+ VT+I ++ +CA+L  +     +H YIS  
Sbjct: 241 SGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +L                           +V K VV  T ++  +A+ G L +AR+IF
Sbjct: 301 HSSL---------------------------LVAKDVVVLTALLDMHARCGNLALAREIF 333

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG------IKPDAVTTVHCLSACS 323
           D +  K VV W+A+I GY Q    +EAL LF +M   G      +KP+AVT V  ++ACS
Sbjct: 334 DGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACS 393

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTY 381
           +LGA      IH++      + +  + +AL+DM AKCG+I    QVF EM E  R  +++
Sbjct: 394 RLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSW 453

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           +++IG   +HG+   A+  FSEM   G  P+EIT++ +LSAC H GLV++G+  F  M  
Sbjct: 454 SSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEK 513

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + +SP  KHY+C+VDLLGR+G L+EA  +I +MP+ AD+ +WG+L  AC LHGN  +GE
Sbjct: 514 DYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGE 573

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
               K+L LD    G +VLLANMY D+  W++  ++R  +   G+ K PG S IE+   +
Sbjct: 574 IVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEV 633

Query: 562 YEFIVRDKSHPELEQIY 578
           Y F+  D+SHPE E IY
Sbjct: 634 YSFMAEDRSHPESEMIY 650



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 227/492 (46%), Gaps = 59/492 (11%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++ + ++F WN  I     T   + A+  + +M  +     +NFT+P L K CA+L    
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRMQAHA-VPSNNFTFPALLKACAALRRLL 69

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE--SCVRNLVSWNSLING 154
              ++  ++ +LG   D +   A++  +  CG    A  VFDE      ++VSW +LI+ 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 155 FVRSGFPREAIRLFRDMQLER-------VEPDEVTMIGMVSACA---QLEDLNLGREIHW 204
           +  +G   EA + F  M+  R          D V++  +VSACA       L  G  +H 
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV--NKTVVSCTTMIVGYAKFGFL 262
            + + G  ++  L N+++ MY  C  +  A  +F+ +    + VVS  ++I G+   G  
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           + A + F+D+  +                              + ++P+ VT +  L +C
Sbjct: 250 ERALRTFEDMVSE----------------------------GTSAVEPNRVTVIALLKSC 281

Query: 323 SQLGALDDGIWIHRFIEKENFNL----NVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           ++LG ++   W+H +I   + +L    +VV+ TAL+DM+A+CGN+A A ++F  +  +N 
Sbjct: 282 AELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNV 341

Query: 379 LTYTAIIGGLALHGKALDAISYFSE------MIGVGLMPDEITFLGILSACCHGGLVDEG 432
           + ++A+I G        +A+  F +      M+GV + P+ +T + +++AC   G     
Sbjct: 342 VCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRS 400

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV-WGALFFAC 491
                + +    L    +  S ++D+  + G +E   Q+   M  +   VV W ++  A 
Sbjct: 401 ASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAE 460

Query: 492 RLHGNVSIGERA 503
            +HG    G+RA
Sbjct: 461 GIHGE---GKRA 469



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG-----TRPDNFT 81
           NL    +I   V+  N   W+  I G+ +     EA+ L++QML  G       +P+  T
Sbjct: 325 NLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVT 384

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-- 139
              +   C+ LG       I  + +  G D D  + +A+I +   CGD+     VF E  
Sbjct: 385 LVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD 444

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              R +VSW+S+I      G  + A+ LF +M+    EP+E+T I ++SAC+    +  G
Sbjct: 445 ESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQG 504

Query: 200 REIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +     + +  G++ T      L+D+  + G L+ A  +  +M
Sbjct: 505 KSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNM 547


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 313/562 (55%), Gaps = 46/562 (8%)

Query: 32  TKILFNVQNP---NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
            ++ FN   P   + F  N  I       +      LY Q  ++   RP ++T+ L+ K 
Sbjct: 73  ARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLILKG 132

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           C+    +  G++I G VLK  F +D+YV  +++ ++V  GD+G A  VFDE  VR+LVSW
Sbjct: 133 CSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSW 192

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
            ++I G+ R G   EA +LF  M    V+ D                             
Sbjct: 193 TAVIVGYARCGDMVEARKLFDGM----VDRD----------------------------- 219

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
                 V   N ++D YVK G+++ A ++FD M  K V+S T+M+ GY++ G +D AR +
Sbjct: 220 ------VAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFL 273

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGA 327
           FD +PEK V+ WNA+I GY Q  RS +AL LF EM+    ++ + VT V  L A + L A
Sbjct: 274 FDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSA 333

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           LD G W+H F+++   + +V +  ALVDMYAKCG I KA  VF EM E+++ ++ A+I G
Sbjct: 334 LDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALING 393

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
             ++G A +A+  F+ M+  G  P++IT   +LSAC H GLV+EGR+ F  M   F + P
Sbjct: 394 YGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMER-FGIVP 452

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           +++HY CM+DLLGR+G L+EAE+LI++MP   + ++  +  FAC    +VS  ER     
Sbjct: 453 QIEHYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTSFLFACCYFEDVSRAERILKVA 512

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV- 566
           ++++ + +G YV+L N+Y     W +   V++MM++RG  K    S IEV+G   EF+  
Sbjct: 513 VKMEKEGAGDYVMLRNLYATERRWADVEDVKEMMKKRGSNKEVAWSVIEVDGRFREFVAG 572

Query: 567 -RDKSHPELEQIYDCLVQLTRH 587
               SH  LE I   L QL +H
Sbjct: 573 YYSHSHSHLEAIQSTLGQLWKH 594



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           SE  ++D    +   +   N  SWN  IRG+ + G+  +A+ L+ +M  N     +  T 
Sbjct: 262 SEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTV 321

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +    A L    LG  + G V +   D  ++V NA++ ++  CG++G A  VF+E   
Sbjct: 322 VSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTE 381

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           ++  SWN+LING+  +G  +EA+ +F  M  E  EP+++TM  ++SAC     +  GR  
Sbjct: 382 KDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRC 441

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              +   G+   +     ++D+  + G+L+ AE++  +M
Sbjct: 442 FEAMERFGIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAM 480


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 304/547 (55%), Gaps = 34/547 (6%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           +Q+ N  +W + I  + + G + +AVDL+ ++L +  T PD FT   L   C  L    L
Sbjct: 208 MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYT-PDKFTLTSLLSACVELEFFSL 266

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G ++   V++ G   D++V   ++ ++     +  +  +F+     N++SW +LI+G+V+
Sbjct: 267 GKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQ 326

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S   +EAI+LF +M    V P+  T   ++ ACA L D  +G+++H    + GL+    +
Sbjct: 327 SRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCV 386

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N+L++MY + G +E                                ARK F+ L EK +
Sbjct: 387 GNSLINMYARSGTMEC-------------------------------ARKAFNILFEKNL 415

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + +N       +A  S E+    HE++ TG+     T    LS  + +G +  G  IH  
Sbjct: 416 ISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHAL 473

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I K  F  N+ +  AL+ MY+KCGN   ALQVF++M  RN +T+T+II G A HG A  A
Sbjct: 474 IVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKA 533

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F EM+ +G+ P+E+T++ +LSAC H GL+DE  K+F  M     +SP+++HY+CMVD
Sbjct: 534 LELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVD 593

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGRSGLL EA + I SMP  AD +VW     +CR+H N  +GE AA K+LE +P D   
Sbjct: 594 LLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPAT 653

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y+LL+N+Y     W++   +RK M+++ + K  G S IEV+  +++F V D SHP+  +I
Sbjct: 654 YILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKI 713

Query: 578 YDCLVQL 584
           YD L +L
Sbjct: 714 YDELDEL 720



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 190/427 (44%), Gaps = 53/427 (12%)

Query: 61  EAVDLYKQMLRNGGTRPD-NFTYPL-----LFKVCASLGLRFLGYEIFGHVLKLGFDVDM 114
           +A DL  + LR   +R D   T PL     L K C   G   LG  +   ++  G  +D 
Sbjct: 15  QAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDS 74

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDE--SCVRNLVSWNSLINGFVRSGFPREAIRLFRDM- 171
            + N++I ++  CGD   A ++F       R+LVSW+++I+ F  +     A+  F  M 
Sbjct: 75  VLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHML 134

Query: 172 QLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKC 228
           Q  R  + P+E     ++ +C+       G  I  ++ ++G     V +  AL+DM+ K 
Sbjct: 135 QCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKG 194

Query: 229 G-KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
           G  ++SA  +FD M +K +V+ T MI  Y++ G LD                        
Sbjct: 195 GLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLD------------------------ 230

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
                  +A+ LF  +  +   PD  T    LSAC +L     G  +H ++ +     +V
Sbjct: 231 -------DAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
            +G  LVDMYAK   +  + ++F+ M   N +++TA+I G     +  +AI  F  M+  
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC----MVDLLGRSG 463
            + P+  TF  +L AC        G++   Q      +   L   +C    ++++  RSG
Sbjct: 344 HVTPNCFTFSSVLKACASLPDFGIGKQLHGQT-----IKLGLSTINCVGNSLINMYARSG 398

Query: 464 LLEEAEQ 470
            +E A +
Sbjct: 399 TMECARK 405



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 40/309 (12%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC +  +L LG+ +H  + +SGL L   L N+L+ +Y KCG  E+A  IF +M    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNM---- 100

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV-QAKRSKEALALFHEMQ 304
                    G+ K                + +V W+AII  +   +  S+  L   H +Q
Sbjct: 101 ---------GHHK----------------RDLVSWSAIISCFANNSMESRALLTFLHMLQ 135

Query: 305 ATG--IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCG 361
            +   I P+       L +CS       G+ I  F+ K   F+ +V +G AL+DM+ K G
Sbjct: 136 CSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGG 195

Query: 362 -NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
            +I  A  VF +M  +N +T+T +I   +  G   DA+  F  ++     PD+ T   +L
Sbjct: 196 LDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLL 255

Query: 421 SACCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           SAC        G++     S + R  L+  +     +VD+  +S  +E + ++  +M + 
Sbjct: 256 SACVELEFFSLGKQLH---SWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LH 311

Query: 479 ADVVVWGAL 487
            +V+ W AL
Sbjct: 312 HNVMSWTAL 320


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 279/448 (62%), Gaps = 3/448 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL--E 194
           F+ + V  +V W S +  + R+G   EA   F  M+L  VEP+ +T I ++SACA    E
Sbjct: 49  FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108

Query: 195 DLNLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
                  +H Y  + GL T  V +  AL+DMY KC +L  A ++F ++  K  VS  TM+
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+ + G +++A ++FD++P +  + W A+I G ++   S++AL  FH+MQ +G+  D V
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYV 228

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           + +  L+AC+ LGAL  G+W+HRF+  + F  N+ +  +L+DMY++CG I  A QVF +M
Sbjct: 229 SIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKM 288

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ +II G A++G A +++ +F  M   G  PD +++ G L+AC H GLV++G 
Sbjct: 289 AKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGL 348

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           + F  M S+ +++P+++HY C+VDL GR+G LE+A  +I  MPM  + VV G+L  ACR 
Sbjct: 349 ELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRT 408

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           HG+V++ ER    L +LDP+    YVLL+N+Y     W+ A  VR+ M+ RGV+K PG S
Sbjct: 409 HGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYS 468

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           S+E++G ++EF+  D  H + + IY  L
Sbjct: 469 SVEIDGKVHEFVAGDNYHADADNIYSML 496



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/525 (24%), Positives = 217/525 (41%), Gaps = 121/525 (23%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILF---------NVQ---NPNSFS----W 46
           ++ + SH   PS+L        S  L   TK+ F         N+    NPNS      W
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR--FLGYEIFGH 104
             ++  +   G++ EA   + +M R  G  P++ T+  L   CA       F    + G+
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRM-RLAGVEPNHITFITLLSACADFPSESFFFASSLHGY 119

Query: 105 VLKLGFD----------VDMYVH----------------------NAVIHVFVSCGDLGL 132
             K G D          +DMY                        N +++ F+  G++ L
Sbjct: 120 ACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIEL 179

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FDE   R+ +SW +LING ++ G+  +A+  F  MQ   V  D V++I +++ACA 
Sbjct: 180 AIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACAD 239

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L  L LG  +H ++        + ++N+L+DMY +CG +E A ++F  M  +T+VS  ++
Sbjct: 240 LGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSI 299

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           IVG+A  GF D                               E+L  F  MQ  G KPD 
Sbjct: 300 IVGFAVNGFAD-------------------------------ESLEFFXAMQKEGFKPDG 328

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           V+    L+ACS  G ++ G+ +   ++        +     +VD+Y + G +  AL +  
Sbjct: 329 VSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIE 388

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           EMP                                  + P+E+    +L+AC   G V+ 
Sbjct: 389 EMP----------------------------------MKPNEVVLGSLLAACRTHGDVNL 414

Query: 432 GRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM 475
             +    M  +F+L P+   +Y  + ++    G  + A  + R+M
Sbjct: 415 AERL---MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTM 456


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 303/536 (56%), Gaps = 34/536 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SWN  I G+ + G   E++ L+ +M+     +PD  T   + + C  LG    G  +
Sbjct: 340 DAVSWNTMICGYSQVGLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEFGKYV 397

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             +++  G++ D    N +I+++  CG+L  +  VF     ++ VSWNS+IN ++++G  
Sbjct: 398 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSF 457

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA++LF+ M+ + V+PD VT + ++S   QL DL LG+E+H  +++ G    + ++N L
Sbjct: 458 DEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTL 516

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG      E+ DS+                         K+F+++  + ++ WN
Sbjct: 517 VDMYAKCG------EMGDSL-------------------------KVFENMKARDIITWN 545

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            II   V ++     L +   M+  G+ PD  T +  L  CS L A   G  IH  I K 
Sbjct: 546 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 605

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               +V +G  L++MY+KCG++  + QVF  M  ++ +T+TA+I    ++G+   A+  F
Sbjct: 606 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 665

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM   G++PD + F+ I+ AC H GLV+EG  YF +M   +++ P+++HY+C+VDLL R
Sbjct: 666 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 725

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           S LL++AE  I SMP+  D  +WGAL  ACR+ G+  I +R + +++EL+P D+G YVL+
Sbjct: 726 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLV 785

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           +N+Y     W++   +RK ++ RG++K PGCS +E+   +Y F    K   + E++
Sbjct: 786 SNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEV 841



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 229/470 (48%), Gaps = 38/470 (8%)

Query: 35  LFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +F + +P  N + WN  IR     G   EA+ LY +  R    +PD +T+P +   CA L
Sbjct: 129 VFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGL 187

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +   I   VL +GF  D+Y+ NA+I ++    DL  A  VF+E  +R++VSWNSLI
Sbjct: 188 LDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 247

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+  +G+  EA+ ++   +   V PD  TM  ++ AC  L  +  G  IH  I + G+ 
Sbjct: 248 SGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 307

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V + N L+ MY K   L     IFD MV +  VS  TMI GY++ G  +         
Sbjct: 308 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYE--------- 358

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 E++ LF EM     KPD +T    L AC  LG L+ G 
Sbjct: 359 ----------------------ESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGK 395

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           ++H ++    +  +      L++MYAKCGN+  + +VF  M  ++S+++ ++I     +G
Sbjct: 396 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 455

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  F +M+   + PD +T++ +LS     G +  G++    ++ +   +  +   
Sbjct: 456 SFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GFNSNIVVS 513

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + +VD+  + G + ++ ++  +M  A D++ W  +  +C    + ++G R
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASCVHSEDCNLGLR 562



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 191/397 (48%), Gaps = 37/397 (9%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    ++   ++  +S SWN  I  +++ G   EA+ L+K M  +   +PD+ TY +L 
Sbjct: 425 NLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD--VKPDSVTYVMLL 482

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
            +   LG   LG E+   + K+GF+ ++ V N ++ ++  CG++G +  VF+    R+++
Sbjct: 483 SMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 542

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +WN++I   V S      +R+   M+ E V PD  TM+ ++  C+ L     G+EIH  I
Sbjct: 543 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 602

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + GL   VP+ N L++MY KCG L ++ ++F  M  K VV+ T +I     +G      
Sbjct: 603 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYG------ 656

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                      K+A+  F EM+A GI PD V  V  + ACS  G
Sbjct: 657 -------------------------EGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 691

Query: 327 ALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAI 384
            +++G+ + HR  +       +     +VD+ ++   + KA      MP + +S  + A+
Sbjct: 692 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 751

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           +    + G   +     SE I + L PD+  +  ++S
Sbjct: 752 LSACRMSGDT-EIAQRVSERI-IELNPDDTGYYVLVS 786


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 311/555 (56%), Gaps = 33/555 (5%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +++ +D   K+   +   +  SWN  I G++  G   + + ++ QML + G   D  T  
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS-GIEIDLATIV 300

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +F  CA   L  LG  +    +K  F  +    N ++ ++  CGDL  A  VF E   R
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 360

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           ++VS+ S+I G+ R G   EA++LF +M+ E + PD  T+  +++ CA+   L+ G+ +H
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            +I E+ L   + ++NALMDMY KCG ++ AE +F  M  K ++S  T+I GY+K  +  
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY-- 478

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH-EMQATGIKPDAVTTVHCLSAC 322
                                        + EAL+LF+  ++     PD  T    L AC
Sbjct: 479 -----------------------------ANEALSLFNLLLEEKRFSPDERTVACVLPAC 509

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + L A D G  IH +I +  +  +  +  +LVDMYAKCG +  A  +F ++  ++ +++T
Sbjct: 510 ASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT 569

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            +I G  +HG   +AI+ F++M   G+  DEI+F+ +L AC H GLVDEG ++F  M   
Sbjct: 570 VMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHE 629

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
            ++ P ++HY+C+VD+L R+G L +A + I +MP+  D  +WGAL   CR+H +V + E+
Sbjct: 630 CKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 689

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
            A K+ EL+P+++G YVL+AN+Y ++  WE+  ++RK + +RG+ K PGCS IE+ G + 
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749

Query: 563 EFIVRDKSHPELEQI 577
            F+  D S+PE E I
Sbjct: 750 IFVAGDSSNPETENI 764



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 210/441 (47%), Gaps = 36/441 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
           N  +R F E+G +  AV L   +  +G    D  T   + ++CA       G E+   + 
Sbjct: 65  NTQLRRFCESGNLENAVKL---LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIR 121

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
             GF +D  + + +  ++ +CGDL  A  VFDE  +   + WN L+N   +SG    +I 
Sbjct: 122 GNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIG 181

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           LF+ M    VE D  T   +  + + L  ++ G ++H +I +SG      + N+L+  Y+
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL 241

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K  +++SA ++FD M  + V+S                               WN+II G
Sbjct: 242 KNQRVDSARKVFDEMTERDVIS-------------------------------WNSIING 270

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           YV    +++ L++F +M  +GI+ D  T V   + C+    +  G  +H    K  F+  
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
                 L+DMY+KCG++  A  VF EM +R+ ++YT++I G A  G A +A+  F EM  
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            G+ PD  T   +L+ C    L+DEG++    +     L   +   + ++D+  + G ++
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE-NDLGFDIFVSNALMDMYAKCGSMQ 449

Query: 467 EAEQLIRSMPMAADVVVWGAL 487
           EAE +   M +  D++ W  +
Sbjct: 450 EAELVFSEMRV-KDIISWNTI 469


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 311/554 (56%), Gaps = 31/554 (5%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +++ +D   K+   +   +  SWN  I G++  G   + + ++ QML + G   D  T  
Sbjct: 91  KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS-GIEIDLATIV 149

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +F  CA   L  LG  +    +K  F  +    N ++ ++  CGDL  A  VF E   R
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           ++VS+ S+I G+ R G   EA++LF +M+ E + PD  T+  +++ CA+   L+ G+ +H
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 269

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            +I E+ L   + ++NALMDMY KCG ++ AE +F  M  K ++S  T+I GY+K  + +
Sbjct: 270 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 329

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A  +F+ L E+               KR                 PD  T    L AC+
Sbjct: 330 EALSLFNLLLEE---------------KR---------------FSPDERTVACVLPACA 359

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            L A D G  IH +I +  +  +  +  +LVDMYAKCG +  A  +F ++  ++ +++T 
Sbjct: 360 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 419

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G  +HG   +AI+ F++M   G+  DEI+F+ +L AC H GLVDEG ++F  M    
Sbjct: 420 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 479

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           ++ P ++HY+C+VD+L R+G L +A + I +MP+  D  +WGAL   CR+H +V + E+ 
Sbjct: 480 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 539

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A K+ EL+P+++G YVL+AN+Y ++  WE+  ++RK + +RG+ K PGCS IE+ G +  
Sbjct: 540 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 599

Query: 564 FIVRDKSHPELEQI 577
           F+  D S+PE E I
Sbjct: 600 FVAGDSSNPETENI 613



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 169/351 (48%), Gaps = 33/351 (9%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           FDE  +   + WN L+N   +SG    +I LF+ M    VE D  T   +  + + L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           + G ++H +I +SG      + N+L+  Y+K  +++SA ++FD M  + V+S        
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS-------- 112

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
                                  WN+II GYV    +++ L++F +M  +GI+ D  T V
Sbjct: 113 -----------------------WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 149

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
              + C+    +  G  +H    K  F+        L+DMY+KCG++  A  VF EM +R
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + ++YT++I G A  G A +A+  F EM   G+ PD  T   +L+ C    L+DEG++  
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 269

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             +     L   +   + ++D+  + G ++EAE +   M +  D++ W  +
Sbjct: 270 EWIKE-NDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV-KDIISWNTI 318


>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
 gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
          Length = 580

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 302/537 (56%), Gaps = 26/537 (4%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y  +IL + +NP++F+W  A+R F + G+  EA+  Y QM R  G  P  F      + C
Sbjct: 56  YLQRILHHSRNPDAFTWACAVRFFSQNGQFMEAIAHYVQMQR-LGLHPSTFAVSSTLRAC 114

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
             +  +F G+ I   V KLGF   +YV  A++  +   GD+G A  VFDE   +N+VSWN
Sbjct: 115 GRIMCKFRGWCIHAQVYKLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWN 174

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG------MVSACAQLEDLNLGREIH 203
           S+++G+V+ G   +A +LF +M ++        + G      M  AC   + +       
Sbjct: 175 SILSGYVKIGNLVDAQKLFDEMPVKDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSAS 234

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           W              NA++  YV CG +++A  +FD M N+  V+  T+I GY+K G ++
Sbjct: 235 W--------------NAMIGGYVNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVN 280

Query: 264 IARKIFDDL--PEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCL 319
            A ++FD +   EK ++ +NA+I  Y Q     +AL LF+ M      I+PD +T    +
Sbjct: 281 SAYELFDKMEESEKELLSFNAMIACYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVI 340

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC+QLG L  G WI  ++EK    L+  L TALVD+YAK GNI +A ++F+ + +R+ +
Sbjct: 341 SACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDLYAKSGNINRAFELFNGLKKRDLV 400

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
            Y+A+I G  ++ KA +AI  F EM+ V + P+ +T+ G+L+A  H GLVDEG   F+ M
Sbjct: 401 AYSAMIFGCGINSKAHEAIRLFKEMLRVNICPNLVTYAGLLTAYNHAGLVDEGYLCFSSM 460

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
                L+P   HY  MVDLLGR+G LEEA +LI SMP+  +  VWGAL  AC+LH NV +
Sbjct: 461 KD-HGLAPLADHYGIMVDLLGRAGRLEEAYELIHSMPVQPNAGVWGALLHACKLHNNVEL 519

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           GE AA    +L    +G   LLAN+Y     W++A ++RK M  +   K  GCS +E
Sbjct: 520 GEIAARNCSKLVTDTTGYRSLLANIYSSMERWDDAKRMRKAMGNKIFAKISGCSWME 576



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 165/377 (43%), Gaps = 59/377 (15%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    K+   +   ++ SWN  + GF  +G M  A  L++QM                 
Sbjct: 185 NLVDAQKLFDEMPVKDAISWNSMLTGFSNSGNMDRACCLFQQMGE--------------- 229

Query: 87  KVCASLGLRFLGYEIFGHV--LKLGFDVDMYVHNAVIHV-----FVSCGDLGLACNVFD- 138
           K  AS      GY   G +   +  FDV M   N V  +     +   G++  A  +FD 
Sbjct: 230 KSSASWNAMIGGYVNCGDMKAARNLFDV-MPNRNNVTRITLIAGYSKLGEVNSAYELFDK 288

Query: 139 -ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV--EPDEVTMIGMVSACAQLED 195
            E   + L+S+N++I  + ++  P +A+ LF  M    V  +PDE+T   ++SAC QL +
Sbjct: 289 MEESEKELLSFNAMIACYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGN 348

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L+ G  I  Y+ + G+ L   LA AL+D+Y K G +  A E+F+ +  + +V+ + MI G
Sbjct: 349 LSYGTWIESYMEKLGIELDDHLATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFG 408

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                                           + +K + EA+ LF EM    I P+ VT 
Sbjct: 409 CG------------------------------INSK-AHEAIRLFKEMLRVNICPNLVTY 437

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP- 374
              L+A +  G +D+G      ++             +VD+  + G + +A ++ H MP 
Sbjct: 438 AGLLTAYNHAGLVDEGYLCFSSMKDHGLAPLADHYGIMVDLLGRAGRLEEAYELIHSMPV 497

Query: 375 ERNSLTYTAIIGGLALH 391
           + N+  + A++    LH
Sbjct: 498 QPNAGVWGALLHACKLH 514


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 279/448 (62%), Gaps = 3/448 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL--E 194
           F+ + V  +V W S +  + R+G   EA   F  M+L  VEP+ +T I ++SACA    E
Sbjct: 49  FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108

Query: 195 DLNLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
                  +H Y  + GL T  V +  AL+DMY KC +L  A ++F ++  K  VS  TM+
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G+ + G +++A ++FD++P +  + W A+I G ++   S++AL  FH+MQ +G+  D V
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYV 228

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           + +  L+AC+ LGAL  G+W+HRF+  + F  N+ +  +L+DMY++CG I  A QVF +M
Sbjct: 229 SIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKM 288

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ +II G A++G A +++ +F  M   G  PD +++ G L+AC H GLV++G 
Sbjct: 289 AKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGL 348

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           + F  M S+ +++P+++HY C+VDL GR+G LE+A  +I  MPM  + VV G+L  ACR 
Sbjct: 349 ELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRT 408

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           HG+V++ ER    L +LDP+    YVLL+N+Y     W+ A  VR+ M+ RGV+K PG S
Sbjct: 409 HGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYS 468

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           S+E++G ++EF+  D  H + + IY  L
Sbjct: 469 SVEIDGKVHEFVAGDNYHADADNIYSML 496



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/525 (24%), Positives = 218/525 (41%), Gaps = 121/525 (23%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILF---------NVQ---NPNSFS----W 46
           ++ + SH   PS+L        S  L   TK+ F         N+    NPNS      W
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR--FLGYEIFGH 104
             ++  +   G++ EA   + +M R  G  P++ T+  L   CA       F    + G+
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRM-RLAGVEPNHITFITLLSACADFPSESFFFASSLHGY 119

Query: 105 VLKLGFD----------VDMYVH----------------------NAVIHVFVSCGDLGL 132
             K G D          +DMY                        N +++ F+  G++ L
Sbjct: 120 ACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIEL 179

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  +FDE   R+ +SW +LING ++ G+  +A+  F  MQ   V  D V++I +++ACA 
Sbjct: 180 AIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACAD 239

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L  L LG  +H ++        + ++N+L+DMY +CG +E A ++F  M  +T+VS  ++
Sbjct: 240 LGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSI 299

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           IVG+A  GF D                               E+L  F+ MQ  G KPD 
Sbjct: 300 IVGFAVNGFAD-------------------------------ESLEFFYAMQKEGFKPDG 328

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           V+    L+ACS  G ++ G+ +   ++        +     +VD+Y + G +  AL +  
Sbjct: 329 VSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIE 388

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           EMP                                  + P+E+    +L+AC   G V+ 
Sbjct: 389 EMP----------------------------------MKPNEVVLGSLLAACRTHGDVNL 414

Query: 432 GRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM 475
             +    M  +F+L P+   +Y  + ++    G  + A  + R+M
Sbjct: 415 AERL---MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTM 456


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 304/561 (54%), Gaps = 34/561 (6%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L+   K+   ++  N  +W + I    + G   EA+DL+ +ML + G  PD FT   L 
Sbjct: 210 DLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLI 269

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
            VCA +    LG E+   V++ G  +D+ V  +++ ++  CG +  A  VFD     N++
Sbjct: 270 SVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVM 329

Query: 147 SWNSLINGFVRSG--FPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIH 203
           SW +L+NG+VR G  + REA+R+F +M L+  V P+  T  G++ ACA L D + G ++H
Sbjct: 330 SWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVH 389

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               + GL+    + N L+ +Y K G++ESA                             
Sbjct: 390 GQTIKLGLSAIDCVGNGLVSVYAKSGRMESA----------------------------- 420

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
             RK FD L EK +V    +    V+         L  E++  G    + T    LS  +
Sbjct: 421 --RKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAA 478

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            +G +  G  IH  + K  F  ++ +  AL+ MY+KCGN   ALQVF++M + N +T+T+
Sbjct: 479 CIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTS 538

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           II G A HG A  A+  F  M+  G+ P+++T++ +LSAC H GL+DE  K+F  M    
Sbjct: 539 IINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNH 598

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + P+++HY+CMVDLLGRSGLL EA + I SMP  AD +VW     +CR+H N  +GE A
Sbjct: 599 GIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHA 658

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A  +LE +P D   Y+LL+N+Y     WE+   +RK M+++ + K  G S IEV   +++
Sbjct: 659 AKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHK 718

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F V D  HP+ +QIY+ L +L
Sbjct: 719 FHVGDTLHPKAQQIYEKLDEL 739



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 222/483 (45%), Gaps = 49/483 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           S++  I  F       +AV+++ Q+L   G  P+ + +  + + C   G    G  +FG 
Sbjct: 122 SYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGF 181

Query: 105 VLKLG-FDVDMYVHNAVIHVFV---SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           VLK G FD  + V   +I +FV   S  DL  A  VFD+   +N+V+W  +I    + G+
Sbjct: 182 VLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGY 241

Query: 161 PREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             EAI LF +M +     PD  T+ G++S CA+++ L+LG+E+H ++  SGL L + +  
Sbjct: 242 NDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGC 301

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+DMY KCG ++ A ++FD M    V+S T ++ GY + G                   
Sbjct: 302 SLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGG------------------- 342

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                GGY      +EA+ +F  M    G+ P+  T    L AC+ L   D G  +H   
Sbjct: 343 -----GGY-----EREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQT 392

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI----IGGLALHGKA 394
            K   +    +G  LV +YAK G +  A + F  + E+N ++ T +    +    L+ + 
Sbjct: 393 IKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSE- 451

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYS 453
              +    E +G G+     T+  +LS     G + +G +  A +  I FR    L   +
Sbjct: 452 -QDLDREVEYVGSGV--SSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFR--TDLSVNN 506

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE--LD 511
            ++ +  + G  E A Q+   M    +V+ W ++      HG  S        +LE  + 
Sbjct: 507 ALISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHGFASKALELFYNMLETGVK 565

Query: 512 PQD 514
           P D
Sbjct: 566 PND 568



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 49/334 (14%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C + ++ +LG+ +H  ++ S L L   L N+L+ +Y K     +A  IF SM N  
Sbjct: 58  LLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMEN-- 115

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE-MQ 304
                                       ++ VV +++II  +   +   +A+ +F + + 
Sbjct: 116 ---------------------------SKRDVVSYSSIISCFANNRNCLKAVEMFDQLLL 148

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNI 363
             G+ P+       + AC + G    G+ +  F+ K   F+ +V +G  L+DM+ K  ++
Sbjct: 149 QDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSL 208

Query: 364 A---KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM-IGVGLMPDEITFLGI 419
           A    A +VF +M E+N +T+T +I  LA +G   +AI  F EM +  G +PD  T  G+
Sbjct: 209 ADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGL 268

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           +S C     +  G++     S + R  L   L     +VD+  + GL++EA ++   M  
Sbjct: 269 ISVCAEIQFLSLGKELH---SWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGM-R 324

Query: 478 AADVVVWGALFFACRLHGNVSIG---ERAAMKLL 508
             +V+ W AL     ++G V  G   ER AM++ 
Sbjct: 325 EHNVMSWTAL-----VNGYVRGGGGYEREAMRMF 353



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  N +   ++  ++++ N  +W   I GF + G   +A++L+  ML   G +P++ TY
Sbjct: 513 SKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLET-GVKPNDVTY 571

Query: 83  PLLFKVCASLGL 94
             +   C+ +GL
Sbjct: 572 IAVLSACSHVGL 583


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 314/578 (54%), Gaps = 45/578 (7%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +   +LIA  + S + NL     +   V +PN   +N  IR +  +G    ++  +  +L
Sbjct: 55  YIAPKLIA--SYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLL 112

Query: 71  RN--GGTRPDNFTYPLLFKVC-ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           +    G   DNFTYP L K C  S     L   +  HV KLGF  D++V N++I  +  C
Sbjct: 113 KMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRC 172

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GD+ +A  VF     R++VSWNS++ G V++G    A+++F +M     E D V+     
Sbjct: 173 GDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP----ERDRVS----- 223

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
                           W              N ++D + K G+++ A ++F+ M  + +V
Sbjct: 224 ----------------W--------------NTMLDGFTKAGEMDKAFKLFERMAERDIV 253

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S +TM+ GY+K G +D+AR +FD  P K +V W  II GY +  + KEA+ L  EM+ +G
Sbjct: 254 SWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSG 313

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++ D    +  L+AC++ G L  G  +H    +  F  +  +  + +DMYAKCG +  A 
Sbjct: 314 LRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAF 373

Query: 368 QVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           +VF+ M  E++ +++ ++I G  +HG    +I  F+ M+  G  PD  TF+G+L AC H 
Sbjct: 374 RVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHA 433

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GLV+EGR YF  M  ++ + P+++HY CMVDLLGR G L+EA  L+RSMP   + ++ G 
Sbjct: 434 GLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGT 493

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  ACR+H +V +    +  L +L P D G + LL+N+Y  S  W    KVRK M + G 
Sbjct: 494 LLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGG 553

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +K  G SSIEV   ++EF VRD SHP+   IY+ + +L
Sbjct: 554 QKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRL 591



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 100/223 (44%), Gaps = 21/223 (9%)

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH  + K + + +  +   L+  Y+   N++ A+ VF+++P+ N   Y  +I   +L G 
Sbjct: 41  IHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGN 100

Query: 394 ALDAISYFSEMIGV---GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
             +++  F  ++ +   G++ D  T+  +L  C      +    + + +  +     KL 
Sbjct: 101 ESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGC------NGSSSWLSLVKMVHAHVEKLG 154

Query: 451 HY------SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
            Y      + ++D   R G +E A ++   M    DVV W ++      +G++      A
Sbjct: 155 FYWDIFVPNSLIDCYCRCGDVEMAMKVFSGME-ERDVVSWNSMVGGLVKNGDLD----GA 209

Query: 505 MKLL-ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           +K+  E+  +D   +  + + +  +   ++A K+ + M ER +
Sbjct: 210 LKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDI 252


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 241/368 (65%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           ++++L+ +Y  CG +  A  +FD M  + VV+   MI GY K G    AR++FD +PE+ 
Sbjct: 115 VSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERN 174

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV W  +IGGY Q KR ++A+ +F  MQ  GI+ D V  +  L+AC  LGA+D G W+HR
Sbjct: 175 VVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHR 234

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           F+ +      + L  +++DMY KCG I KA++VF  M E++ +T+T +I G ALHG  L 
Sbjct: 235 FVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQ 294

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A+  F  M    + P+ +TFL ILSAC H GL D GR YF  M S +R+ P+++HY CMV
Sbjct: 295 AVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMV 354

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           DLLGR+G L+EA+ L+++MP+ A+  +WGAL  A R HG+  +GE+A + L+EL+P +SG
Sbjct: 355 DLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIELEPNNSG 414

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            Y+LL+N++ +   W +  K+RK M ERG+   PG SSIEV+G+++EF  RD SHP +  
Sbjct: 415 NYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVHEFTSRDWSHPFIHT 474

Query: 577 IYDCLVQL 584
           I + L ++
Sbjct: 475 ICEVLCEI 482



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 33/284 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +I  +V  GD   A  +FD    RN+VSW ++I G+ +   P +A+ +FR MQ
Sbjct: 143 DVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQ 202

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E +E D V ++ +++AC  L  ++LG  +H ++   GL   +PL N+++DMY+KCG +E
Sbjct: 203 VEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIE 262

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A E+F+ M  K+VV+ TT+I G+A  G                                
Sbjct: 263 KAVEVFEGMEEKSVVTWTTLIAGFALHGL------------------------------- 291

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW-IHRFIEKENFNLNVVLGT 351
             +A+ +F  M+   + P+AVT +  LSACS +G  D G W  +  + +      V    
Sbjct: 292 GLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYG 351

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
            +VD+  + G + +A  +   MP + N+  + A++     HG A
Sbjct: 352 CMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDA 395



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW   I G+ +  +  +AV+++++M +  G   D      +   C  LG   LG  +
Sbjct: 174 NVVSWTTVIGGYAQMKRPEKAVEVFRRM-QVEGIEADGVALLSVLAACGDLGAVDLGEWV 232

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V++ G   ++ + N++I +++ CG +  A  VF+    +++V+W +LI GF   G  
Sbjct: 233 HRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLG 292

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY----ISESGLTLTVPL 217
            +A+ +F  M+ E + P+ VT + ++SAC+ +   +LGR   WY    +S+  +   V  
Sbjct: 293 LQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGR---WYFNIMVSQYRIKPRVEH 349

Query: 218 ANALMDMYVKCGKLESAEEIFDSM 241
              ++D+  + G L+ A+++  +M
Sbjct: 350 YGCMVDLLGRAGCLKEAQDLVKNM 373


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 308/537 (57%), Gaps = 34/537 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   N  SWN  I       + ++A+++++ M+ +GG +P++ T+  +  V   L
Sbjct: 165 RVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMI-DGGVKPNSVTFSSMLPVLVEL 223

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L   G EI G  L+ G + D++V NA+I ++   G    A NVF++   +N+VSWN+++
Sbjct: 224 KLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMV 283

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             F ++     A+ L R MQ +   P+ VT   ++ ACA++  L  G+EIH     +G +
Sbjct: 284 ANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSS 343

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           + + ++NAL DMY KCG                   C            L++AR++F  +
Sbjct: 344 VDLFVSNALTDMYAKCG-------------------C------------LNLARRVFK-I 371

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             +  V +N +I GY Q     E+L LF EM   G+K D V+ +  +SAC+ L AL  G 
Sbjct: 372 SLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGK 431

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H    +++ + ++ +  AL+D Y KCG I  A +VF ++P R++ ++ ++I G  + G
Sbjct: 432 EVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLG 491

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +   AI+ F  M   G+  D ++++ +LSAC HGGLV+EG+KYF  M  +  + P   HY
Sbjct: 492 ELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQ-VQNIKPTQMHY 550

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVDLLGR+GL+EEA +LI S+P+  D  VWGAL  ACR+HG + +   AA  L +L P
Sbjct: 551 ACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKP 610

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           Q SG Y +L+NMY ++  W+EA +VRK+M+ RG +K PGCS ++++  ++ F+  ++
Sbjct: 611 QHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGER 667



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 207/402 (51%), Gaps = 35/402 (8%)

Query: 74  GTRPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           G R D+ T+P + K CA SL ++  G EI G V KLGFD D++V N ++  + +CG L  
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQ-KGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACA 191
              VFDE   R++VSWNS+I  F   GF  EAI LF +M L     P+ V+++ ++  CA
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
            LED   GR+IH Y+ ++GL   V + NAL+D+Y KCG ++ +  +F             
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVF------------- 167

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
                             D++ E+  V WNAII      +R+++AL +F  M   G+KP+
Sbjct: 168 ------------------DEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPN 209

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           +VT    L    +L   D G  IH F  +     ++ +  AL+DMYAK G   +A  VF+
Sbjct: 210 SVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFN 269

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           ++ E+N +++ A++   A +   L A+    +M   G +P+ +TF  +L AC   G +  
Sbjct: 270 QIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRP 329

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           G++  A+       S  L   + + D+  + G L  A ++ +
Sbjct: 330 GKEIHARAIRTGS-SVDLFVSNALTDMYAKCGCLNLARRVFK 370



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 246/510 (48%), Gaps = 43/510 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I  F   G   EA+ L+ +M    G RP+  +   +  VCA L     G +I  +
Sbjct: 75  SWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCY 134

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V+K G D  + V NA++ V+  CG +  +  VFDE   RN VSWN++I         ++A
Sbjct: 135 VVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDA 194

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +FR M    V+P+ VT   M+    +L+  + G+EIH +    GL   + +ANAL+DM
Sbjct: 195 LEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDM 254

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y K G+   A  +F+ +  K +VS                               WNA++
Sbjct: 255 YAKSGRSLQASNVFNQIGEKNIVS-------------------------------WNAMV 283

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
             + Q +    A+ L  +MQA G  P++VT  + L AC+++G L  G  IH    +   +
Sbjct: 284 ANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSS 343

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           +++ +  AL DMYAKCG +  A +VF ++  R+ ++Y  +I G +      +++  F EM
Sbjct: 344 VDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEM 402

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G+  D ++++G++SAC +   + +G++    ++    L   L   + ++D   + G 
Sbjct: 403 GIKGMKLDVVSYMGVISACANLAALKQGKEVHG-LAVRKHLHTHLFIANALLDFYIKCGR 461

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-----DSGIYV 519
           ++ A ++ R +P + D   W ++     + G ++I    A+ L E   +     DS  Y+
Sbjct: 462 IDLAGKVFRQIP-SRDTASWNSMILGYGMLGELTI----AINLFEAMKEDGVEYDSVSYI 516

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
            + +      + EE  K  + M+ + ++ T
Sbjct: 517 AVLSACSHGGLVEEGKKYFEHMQVQNIKPT 546



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 196/389 (50%), Gaps = 36/389 (9%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL S  F  + LI   A S  ++L   + +   +   N  SWN  +  F +      AVD
Sbjct: 240 GLESDIFVANALIDMYAKS-GRSLQ-ASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVD 297

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L +QM  +G   P++ T+  +   CA +G    G EI    ++ G  VD++V NA+  ++
Sbjct: 298 LVRQMQADGEI-PNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMY 356

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             CG L LA  VF  S +R+ VS+N LI G+ ++    E++RLF +M ++ ++ D V+ +
Sbjct: 357 AKCGCLNLARRVFKIS-LRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYM 415

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
           G++SACA L  L  G+E+H       L   + +ANAL+D Y+KCG+++ A ++F  + ++
Sbjct: 416 GVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSR 475

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
              S  +MI+GY   G L I                               A+ LF  M+
Sbjct: 476 DTASWNSMILGYGMLGELTI-------------------------------AINLFEAMK 504

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
             G++ D+V+ +  LSACS  G +++G      ++ +N     +    +VD+  + G I 
Sbjct: 505 EDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIE 564

Query: 365 KALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           +A+++   +P E ++  + A++G   +HG
Sbjct: 565 EAVKLIESLPIEPDANVWGALLGACRIHG 593



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G++ D  T    L AC+   ++  G  IH  + K  F+ +V +G  L+  Y  CG +   
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM-IGVGLMPDEITFLGILSACCH 425
            +VF EM ER+ +++ ++IG  ++HG   +AI  F EM +  G  P+ ++ + +L  C  
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVC-- 119

Query: 426 GGLVD--EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            GL D   GR+    +     L  ++   + +VD+ G+ G ++++ ++   +    + V 
Sbjct: 120 AGLEDGVTGRQIHCYVVKT-GLDSQVTVGNALVDVYGKCGYVKDSRRVFDEIS-ERNGVS 177

Query: 484 WGAL 487
           W A+
Sbjct: 178 WNAI 181


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 308/557 (55%), Gaps = 51/557 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGG------TRPDNFTYPLLFKVCA----SLGL 94
           SW   I  +   G + EA   + +M    G         D  +   L   CA    S  L
Sbjct: 122 SWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCL 181

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLI 152
           R  G  + G V+K GF V  ++ N+++H++ +C D+G A  VF+   +  R++VSWNSLI
Sbjct: 182 R-RGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 153 NGFVRSGFPREAIRLFRDMQLE---RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           +GF  +G    A+R F DM  E    VEP+ VT+I ++ +CA+L  +     +H YIS  
Sbjct: 241 SGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +L                           +V K VV  T ++  +A+ G L +AR+IF
Sbjct: 301 HSSL---------------------------LVAKDVVVLTALLDMHARCGNLALAREIF 333

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG------IKPDAVTTVHCLSACS 323
           D +  K VV W+A+I GY Q    +EAL LF +M   G      +KP+AVT V  ++ACS
Sbjct: 334 DGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACS 393

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTY 381
           +LGA      IH++      + +  + +AL+DM AKCG+I    QVF EM E  R  +++
Sbjct: 394 RLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSW 453

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           +++IG   +HG+   A+  FSEM   G  P+EIT++ +LSAC H GLV++G+  F  M  
Sbjct: 454 SSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEK 513

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + +SP  KHY+C+VDLLGR+G L+EA  +I +MP+ AD+ +WG+L  AC LHGN  +GE
Sbjct: 514 DYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGE 573

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
               K+L LD    G +VLLANMY D+  W++  ++R  +   G+ K PG S IE+   +
Sbjct: 574 IVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEV 633

Query: 562 YEFIVRDKSHPELEQIY 578
           Y F+  D+SHPE E IY
Sbjct: 634 YSFMAEDRSHPESEMIY 650



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 226/492 (45%), Gaps = 59/492 (11%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++ + ++F WN  I     T   + A+  + +M  +     +NFT+P L K CA+L    
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRMQAHA-VPSNNFTFPALLKACAALRRLL 69

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE--SCVRNLVSWNSLING 154
              ++  ++ +LG   D +   A++  +  CG    A  VFDE      ++VSW +LI+ 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 155 FVRSGFPREAIRLFRDMQLER-------VEPDEVTMIGMVSACA---QLEDLNLGREIHW 204
           +  +G   EA   F  M+  R          D V++  +VSACA       L  G  +H 
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV--NKTVVSCTTMIVGYAKFGFL 262
            + + G  ++  L N+++ MY  C  +  A  +F+ +    + VVS  ++I G+   G  
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           + A + F+D+  +                              + ++P+ VT +  L +C
Sbjct: 250 ERALRTFEDMVSE----------------------------GTSAVEPNRVTVIALLKSC 281

Query: 323 SQLGALDDGIWIHRFIEKENFNL----NVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           ++LG ++   W+H +I   + +L    +VV+ TAL+DM+A+CGN+A A ++F  +  +N 
Sbjct: 282 AELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNV 341

Query: 379 LTYTAIIGGLALHGKALDAISYFSE------MIGVGLMPDEITFLGILSACCHGGLVDEG 432
           + ++A+I G        +A+  F +      M+GV + P+ +T + +++AC   G     
Sbjct: 342 VCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRS 400

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV-WGALFFAC 491
                + +    L    +  S ++D+  + G +E   Q+   M  +   VV W ++  A 
Sbjct: 401 ASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAE 460

Query: 492 RLHGNVSIGERA 503
            +HG    G+RA
Sbjct: 461 GIHGE---GKRA 469



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG-----TRPDNFT 81
           NL    +I   V+  N   W+  I G+ +     EA+ L++QML  G       +P+  T
Sbjct: 325 NLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVT 384

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-- 139
              +   C+ LG       I  + +  G D D  + +A+I +   CGD+     VF E  
Sbjct: 385 LVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD 444

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              R +VSW+S+I      G  + A+ LF +M+    EP+E+T I ++SAC+    +  G
Sbjct: 445 ESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQG 504

Query: 200 REIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +     + +  G++ T      L+D+  + G L+ A  +  +M
Sbjct: 505 KSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNM 547


>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Brachypodium distachyon]
          Length = 500

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 254/402 (63%), Gaps = 3/402 (0%)

Query: 187 VSACAQLEDL--NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
           ++A A++  L   LG ++H  I  +GL     ++ +L+  Y  CG++ SA  +FD   +K
Sbjct: 74  LNAAAKIPHLRGTLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDK 133

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            +     MI GY K G L  AR++FD +P + VV W  +IG Y Q K+  EA+ +F  MQ
Sbjct: 134 DIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQ 193

Query: 305 AT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              GI+PD V  +  LSAC  LGA+D G W+HRF+ +      + L  A++DMY K G +
Sbjct: 194 VEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCV 253

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA++VF  M +++ +T+T +I G ALHG  L+AI  F  M    + P+++TFL ILSAC
Sbjct: 254 RKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSAC 313

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL D GR YF  M S +R+  +++HY CMVDLLGR+G L EA+ L++ MP  A+  +
Sbjct: 314 SHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAI 373

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WGAL  A R HG+  +G++A + L+EL+P +SG Y+LL+N+Y +   W++  K+RK M++
Sbjct: 374 WGALLAAARTHGDAELGKQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKD 433

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           RG+   PG SSIEV+G+++EF  RD SHP L +I   L ++T
Sbjct: 434 RGLRNVPGASSIEVDGMVHEFTSRDGSHPCLHKICKVLCEIT 475



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 34/287 (11%)

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D D++  N +I  +V  G+L  A  +FD    RN+VSW ++I  + +   P EA+ +FR 
Sbjct: 132 DKDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRR 191

Query: 171 MQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           MQ+E  +EPD V ++ ++SAC  L  ++LG  +H ++   GL   +PL NA++DMYVK G
Sbjct: 192 MQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLG 251

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +  A E+F+ M  K+VV+ TT+I G+A  G                             
Sbjct: 252 CVRKAVEVFEGMDQKSVVTWTTVIAGFALHGL---------------------------- 283

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF-IEKENFNLNVV 348
                EA+ +F  M+   + P+ VT +  LSACS +G  D G W  +  + +      V 
Sbjct: 284 ---GLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVE 340

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
               +VD+  + G + +A  +  +MP + N+  + A++     HG A
Sbjct: 341 HYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDA 387



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 24  ESKNLDYCTKILFNVQNP-NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           +S NL  C + LF+V    N  SW   I  + +  +  EAV+++++M    G  PD    
Sbjct: 147 KSGNL-ACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVAL 205

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C  LG   LG  +   V++ G    + + NA+I ++V  G +  A  VF+    
Sbjct: 206 LSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQ 265

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++V+W ++I GF   G   EAI +FR M++E V P++VT + ++SAC+ +   +LGR  
Sbjct: 266 KSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGR-- 323

Query: 203 HWY----ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
            WY    +S+  +   V     ++D+  + G L  A+++   M  K 
Sbjct: 324 -WYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKA 369


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 300/543 (55%), Gaps = 31/543 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +  +WN  + G+   G  R A+++  +M    G RPD+ T   +   CA+        E 
Sbjct: 124 DRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREA 183

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               ++ G +  + V  A++  +  CGD+  A  VFD    +N VSWN++I+G+ ++G  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           REA+ LF  M  E V+  +V+++  + AC +L  L+ G  +H  +   GL   V + NAL
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + MY KC ++                               D+A  +FD+L  +  V WN
Sbjct: 304 ITMYSKCKRV-------------------------------DLASHVFDELDRRTQVSWN 332

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G  Q   S++A+ LF  MQ   +KPD+ T V  + A + +       WIH +  + 
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRL 392

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           + + +V + TAL+DMYAKCG +  A  +F+   ER+ +T+ A+I G   HG    A+  F
Sbjct: 393 HLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELF 452

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM  +G++P+E TFL +LSAC H GLVDEGR+YF  M   + L P ++HY  MVDLLGR
Sbjct: 453 EEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGR 512

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L+EA   I+ MPM   + V+GA+  AC+LH NV + E +A K+ EL PQ+   +VLL
Sbjct: 513 AGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLL 572

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y +++MW++  +VR  ME+ G++KTPG S I++   ++ F     +H + ++IY  L
Sbjct: 573 ANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRL 632

Query: 582 VQL 584
            +L
Sbjct: 633 AKL 635



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 209/443 (47%), Gaps = 42/443 (9%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           + + G  P   T+  L K+CA+ G    G  +   +   G D +     A+ +++  C  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVS 188
              A  VFD   VR+ V+WN+L+ G+ R+G  R A+ +   MQ E  E PD +T++ ++ 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           ACA    L   RE H +   SGL   V +A A++D Y KCG + +A  +FD M  K  VS
Sbjct: 170 ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS 229

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              MI GYA+ G                                S+EALALF+ M   G+
Sbjct: 230 WNAMIDGYAQNG-------------------------------DSREALALFNRMVEEGV 258

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
               V+ +  L AC +LG LD+G+ +H  + +   + NV +  AL+ MY+KC  +  A  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF E+  R  +++ A+I G A +G + DA+  F+ M    + PD  T + ++ A     +
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL--ADI 376

Query: 429 VDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            D  +  +    SI   L   +   + ++D+  + G +  A  L  S      V+ W A+
Sbjct: 377 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAM 435

Query: 488 FFACRLHGNVSIG-ERAAMKLLE 509
                +HG  S G  +AA++L E
Sbjct: 436 -----IHGYGSHGFGKAAVELFE 453



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 189/385 (49%), Gaps = 43/385 (11%)

Query: 12  APSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           A + L A+C   + +      +++F+ +   NS SWN  I G+ + G  REA+ L+ +M+
Sbjct: 199 ATAILDAYCKCGDIR----AARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMV 254

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
             G    D      L + C  LG    G  +   ++++G D ++ V NA+I ++  C  +
Sbjct: 255 EEGVDVTDVSVLAAL-QACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRV 313

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            LA +VFDE   R  VSWN++I G  ++G   +A+RLF  MQLE V+PD  T++ ++ A 
Sbjct: 314 DLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL 373

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A + D    R IH Y     L   V +  AL+DMY KCG++  A  +F+S   + V++  
Sbjct: 374 ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWN 433

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
            MI GY   GF                                K A+ LF EM++ GI P
Sbjct: 434 AMIHGYGSHGF-------------------------------GKAAVELFEEMKSIGIVP 462

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL---GTALVDMYAKCGNIAKAL 367
           +  T +  LSACS  G +D+G      + KE++ L   +   GT +VD+  + G + +A 
Sbjct: 463 NETTFLSVLSACSHAGLVDEGREYFTSM-KEDYGLEPGMEHYGT-MVDLLGRAGKLDEAW 520

Query: 368 QVFHEMPERNSLT-YTAIIGGLALH 391
               +MP    L+ Y A++G   LH
Sbjct: 521 AFIQKMPMDPGLSVYGAMLGACKLH 545



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 147/339 (43%), Gaps = 33/339 (9%)

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           RS  P  A+  F  M      P   T   ++  CA   DL  GR +H  ++  G+     
Sbjct: 37  RSDLP-AALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEAL 95

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
            A AL +MY KC +   A  +FD M  +  V+   ++ GYA+ G   +A ++   + E+ 
Sbjct: 96  AATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEE- 154

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
                                         G +PD++T V  L AC+   AL      H 
Sbjct: 155 -----------------------------EGERPDSITLVSVLPACANARALAACREAHA 185

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           F  +      V + TA++D Y KCG+I  A  VF  MP +NS+++ A+I G A +G + +
Sbjct: 186 FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSRE 245

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           A++ F+ M+  G+   +++ L  L AC   G +DEG +    +  I  L   +   + ++
Sbjct: 246 ALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG-LDSNVSVMNALI 304

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +  +   ++ A  +   +      V W A+   C  +G
Sbjct: 305 TMYSKCKRVDLASHVFDELDRRTQ-VSWNAMILGCAQNG 342


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 306/558 (54%), Gaps = 36/558 (6%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           D   K+   V +P++  WN  + G   +    EA++ + +M+  G  RPD+ T     + 
Sbjct: 166 DDARKVFDTVPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRA 221

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
            A      +G  + G+ +K G     +V   ++ ++  CGD+  A  +FD     +LV++
Sbjct: 222 AAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAY 281

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N+LI+G+  +G    ++ LF+++      P+  T++ ++   +      L R +H ++ +
Sbjct: 282 NALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVK 341

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + L     ++ AL  +Y +   +ESA                               R I
Sbjct: 342 ARLDADALVSTALTTLYCRLNDMESA-------------------------------RSI 370

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD + EK +  WNA+I GY Q   ++ A+ALF  MQ   ++P+ +T    LSAC+ LGAL
Sbjct: 371 FDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGAL 430

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G W+HR I KE   LNV + TAL+DMYAKCG+IA+A  +F  M  +N +++ A+I G 
Sbjct: 431 SLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGY 490

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
            LHG+  +A+  + +M+   ++P   TFL ++ AC HGGLVDEG+K F  M++ +R++P 
Sbjct: 491 GLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPG 550

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKL 507
           ++H +CMVDLLGR+G L EA +LI   P +A    VWGAL  AC +H N  + + A+ KL
Sbjct: 551 IEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKL 610

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
            ELD +++G YVLL+N+Y     + EA  VR+  + R + KTPGC+ IE+    + F+  
Sbjct: 611 FELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAG 670

Query: 568 DKSHPELEQIYDCLVQLT 585
           D  HP+ E IY  L +LT
Sbjct: 671 DHLHPQSEAIYSYLERLT 688



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 153/388 (39%), Gaps = 72/388 (18%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           D    R +H     +G      +A+AL  +Y K  + + A ++FD+              
Sbjct: 129 DAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDT-------------- 174

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAV 313
                            +P    + WN ++ G        EAL  F  M   G ++PD+ 
Sbjct: 175 -----------------VPSPDTILWNTLLAGL----PGSEALEAFVRMVDAGRVRPDST 213

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L A ++   +  G  +H +  K     +  + T L+ +Y+KCG++  A  +F  M
Sbjct: 214 TLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRM 273

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI-----------LSA 422
              + + Y A+I G +++G    ++  F E+   G  P+  T + +           L+ 
Sbjct: 274 DNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLAR 333

Query: 423 CCHGGLVDEGRKYFAQMS-----------------SIFR--LSPKLKHYSCMVDLLGRSG 463
           C H  +V       A +S                 SIF   L   ++ ++ M+    ++G
Sbjct: 334 CLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNG 393

Query: 464 LLEEAE---QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           L E A    QL++ + +  + +   +   AC   G +S+G +   +++  +  +  +YV+
Sbjct: 394 LTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYVM 452

Query: 521 LA--NMYRDSNMWEEAGKVRKMMEERGV 546
            A  +MY       EA  +   M+ + V
Sbjct: 453 TALIDMYAKCGSIAEARSIFDRMDNKNV 480


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 197/527 (37%), Positives = 308/527 (58%), Gaps = 9/527 (1%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           + + WN  I+        R A+ L+  ML NG    D F+  L+ K C+ LGL   G +I
Sbjct: 89  DXYLWNAVIKSHSHGTDPRRALLLFCLMLENG-VSVDKFSLSLVLKACSRLGLVKEGMQI 147

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G + K G   D+++ N +I +++ CG LG A  +FD    R+ VS+NS+I+G+V+ G  
Sbjct: 148 HGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGST 207

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANA 220
             A  LF D+  E ++ + ++   M+S  AQ  D +++  ++   + +  L       N+
Sbjct: 208 ESARELF-DLMPEEMK-NLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISW----NS 261

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           ++D YVK G++E A+ +FD M  + VV+ +TMI GYAK GF+  A+ +FD +P + VV +
Sbjct: 262 MIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSY 321

Query: 281 NAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           N++I GYVQ + + EAL +F +M+  + + PD  T V  LSA +QLG L   + +H +I 
Sbjct: 322 NSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV 381

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           ++ F L   LG AL+DMY+KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A  
Sbjct: 382 EKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFD 441

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
              ++    + PD+ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L
Sbjct: 442 MLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 501

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
            RSG +E A+ LI  MP+  + V+W     AC  H     GE  A  L+     +   YV
Sbjct: 502 SRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYV 561

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           LL+N+Y     W++  ++R +M+ER +EK PGCS IE++G ++EF V
Sbjct: 562 LLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFFV 608


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 322/572 (56%), Gaps = 18/572 (3%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFN-------VQNPNSFSWNVAIRGFLET 56
           TG+I +    +R++   A S    L    + +F+       V++P  + WN  I+     
Sbjct: 8   TGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDP--YLWNAMIKSHSHG 65

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
              R A+ L+  ML  G    D F+  L+ K C+ LG    G +I G + K G   D+++
Sbjct: 66  TDPRRALLLFCLMLEIG-VPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSDLFL 124

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N +I +++ CG LG A  +FD    R+ VS+NS+I+G+V+ G    A  LF  M  E  
Sbjct: 125 QNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREM- 183

Query: 177 EPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
             + ++   ++S  AQ  E +++  ++   + E  L       N+++D YVK G++E A+
Sbjct: 184 -KNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISW----NSMIDGYVKHGRIEDAK 238

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++FD +  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ +   E
Sbjct: 239 DLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHME 298

Query: 296 ALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           AL +F +M+  + + PD  T V  LSA +QLG L   + +H +I ++ F L   LG AL+
Sbjct: 299 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALI 358

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           DMY+KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A     ++    + PD+I
Sbjct: 359 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDI 418

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           TF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVD+L RSG +E A+ LI  
Sbjct: 419 TFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEE 478

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MP+  + V+W     AC  H     GE  A  L+     +   YVLL+NMY    MW++ 
Sbjct: 479 MPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWKDV 538

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
            +VR MM+ER +EK PGCS IE++G ++EF V
Sbjct: 539 RRVRTMMKERKIEKIPGCSWIELDGXVHEFFV 570


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 300/543 (55%), Gaps = 31/543 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +  +WN  + G+   G  R A+++  +M    G RPD+ T   +   CA+        E 
Sbjct: 124 DRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREA 183

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               ++ G +  + V  A++  +  CGD+  A  VFD    +N VSWN++I+G+ ++G  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           REA+ LF  M  E V+  +V+++  + AC +L  L+ G  +H  +   GL   V + NAL
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + MY KC ++                               D+A  +FD+L  +  V WN
Sbjct: 304 ITMYSKCKRV-------------------------------DLASHVFDELDRRTQVSWN 332

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G  Q   S++A+ LF  MQ   +KPD+ T V  + A + +       WIH +  + 
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRL 392

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           + + +V + TAL+DMYAKCG +  A  +F+   ER+ +T+ A+I G   HG    A+  F
Sbjct: 393 HLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELF 452

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM  +G++P+E TFL +LSAC H GLVDEGR+YF  M   + L P ++HY  MVDLLGR
Sbjct: 453 EEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGR 512

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L+EA   I+ MPM   + V+GA+  AC+LH NV + E +A K+ EL PQ+   +VLL
Sbjct: 513 AGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLL 572

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y +++MW++  +VR  ME+ G++KTPG S I++   ++ F     +H + ++IY  L
Sbjct: 573 ANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRL 632

Query: 582 VQL 584
            +L
Sbjct: 633 AKL 635



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 209/443 (47%), Gaps = 42/443 (9%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           + + G  P   T+  L K+CA+ G    G  +   +   G D +     A+ +++  C  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVS 188
              A  VFD   VR+ V+WN+L+ G+ R+G  R A+ +   MQ E  E PD +T++ ++ 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           ACA    L   RE H +   SGL   V +A A++D Y KCG + +A  +FD M  K  VS
Sbjct: 170 ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS 229

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              MI GYA+ G                                S+EALALF+ M   G+
Sbjct: 230 WNAMIDGYAQNG-------------------------------DSREALALFNRMVEEGV 258

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
               V+ +  L AC +LG LD+G+ +H  + +   + NV +  AL+ MY+KC  +  A  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF E+  R  +++ A+I G A +G + DA+  F+ M    + PD  T + ++ A     +
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL--ADI 376

Query: 429 VDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            D  +  +    SI   L   +   + ++D+  + G +  A  L  S      V+ W A+
Sbjct: 377 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAM 435

Query: 488 FFACRLHGNVSIG-ERAAMKLLE 509
                +HG  S G  +AA++L E
Sbjct: 436 -----IHGYGSHGFGKAAVELFE 453



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 189/385 (49%), Gaps = 43/385 (11%)

Query: 12  APSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           A + L A+C   + +      +++F+ +   NS SWN  I G+ + G  REA+ L+ +M+
Sbjct: 199 ATAILDAYCKCGDIR----AARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMV 254

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
             G    D      L + C  LG    G  +   ++++G D ++ V NA+I ++  C  +
Sbjct: 255 EEGVDVTDVSVLAAL-QACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRV 313

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            LA +VFDE   R  VSWN++I G  ++G   +A+RLF  MQLE V+PD  T++ ++ A 
Sbjct: 314 DLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL 373

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A + D    R IH Y     L   V +  AL+DMY KCG++  A  +F+S   + V++  
Sbjct: 374 ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWN 433

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
            MI GY   GF                                K A+ LF EM++ GI P
Sbjct: 434 AMIHGYGSHGF-------------------------------GKAAVELFEEMKSIGIVP 462

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL---GTALVDMYAKCGNIAKAL 367
           +  T +  LSACS  G +D+G      + KE++ L   +   GT +VD+  + G + +A 
Sbjct: 463 NETTFLSVLSACSHAGLVDEGREYFTSM-KEDYGLEPGMEHYGT-MVDLLGRAGKLDEAW 520

Query: 368 QVFHEMPERNSLT-YTAIIGGLALH 391
               +MP    L+ Y A++G   LH
Sbjct: 521 AFIQKMPMDPGLSVYGAMLGACKLH 545



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 144/332 (43%), Gaps = 32/332 (9%)

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+  F  M      P   T   ++  CA   DL  GR +H  ++  G+      A AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY KC +   A  +FD M  +  V+   ++ GYA+ G   +A ++   + E+        
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEE-------- 154

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
                                  G +PD++T V  L AC+   AL      H F  +   
Sbjct: 155 ----------------------EGERPDSITLVSVLPACANARALAACREAHAFAIRSGL 192

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
              V + TA++D Y KCG+I  A  VF  MP +NS+++ A+I G A +G + +A++ F+ 
Sbjct: 193 EELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNR 252

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+  G+   +++ L  L AC   G +DEG +    +  I  L   +   + ++ +  +  
Sbjct: 253 MVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG-LDSNVSVMNALITMYSKCK 311

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            ++ A  +   +      V W A+   C  +G
Sbjct: 312 RVDLASHVFDELDRRTQ-VSWNAMILGCAQNG 342


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/555 (34%), Positives = 303/555 (54%), Gaps = 32/555 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N+    K+   + + N  S+N  I G+    +  +A  L+ Q+ +N  +  D  +     
Sbjct: 308 NMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSF-DEVSLSGAL 366

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
              A +     G ++ G  +K     ++ V NA++ ++  CG L  A  +FDE  +R+ V
Sbjct: 367 SAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPV 426

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN++I    ++    + +  F  M   ++EPDE T   ++ ACA     + G E+H  I
Sbjct: 427 SWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRI 486

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            +SG+ L + + +AL+DMY KCG +E AE                               
Sbjct: 487 IKSGMGLKMFVGSALVDMYSKCGMMEEAE------------------------------- 515

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           KI   L E+ +V WNAII G+   K+S+++   F  M   G++PD  T    L  C+ L 
Sbjct: 516 KIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLA 575

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            +  G  IH  + K     +V + + LVDMY+KCGN+  +L +F + P+R+S+T+ A+I 
Sbjct: 576 TVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMIC 635

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A HG   +A+  F  M+   + P+  TF+ +L AC H G   +G  YF +M+SI+ L 
Sbjct: 636 GFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALE 695

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P+L+HYSCMVD+LGRSG +EEA +LI+ MP  AD ++W  L   C++ GNV + E+AA  
Sbjct: 696 PQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASS 755

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           LL+LDP+DS  Y LL+N+Y D+ MW++  K+R+ M    ++K PGCS IEV   ++ F+V
Sbjct: 756 LLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLV 815

Query: 567 RDKSHPELEQIYDCL 581
            DK+HP+ E IY  L
Sbjct: 816 CDKAHPKCEMIYSLL 830



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 250/529 (47%), Gaps = 76/529 (14%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+L+ G +++++ ++ +M R+ G   D+ T  +  K+C+ L  + LG +I G 
Sbjct: 124 SWNSLISGYLQNGDIQKSIAVFLKM-RDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGI 182

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +++GFD D+   +A++ ++  C  L  + +VF E   +N +SW++ I G V++      
Sbjct: 183 AVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRG 242

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           ++LF++MQ + +   + T   +  +CA L    LG ++H +  ++     V +  A +DM
Sbjct: 243 LKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDM 302

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG--------FLDIARK--IFDDLPE 274
           Y KC  +  A ++F  + +  + S   MI+GYA+          FL + +    FD++  
Sbjct: 303 YAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSL 362

Query: 275 KYVVPWNAIIGGYVQ-------AKRSK----------------------EALALFHEMQ- 304
              +   A+I G+ +       A +S                       EA  LF EM+ 
Sbjct: 363 SGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEI 422

Query: 305 ------------------------------ATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
                                          + ++PD  T    L AC+   A  +G+ +
Sbjct: 423 RDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEV 482

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H  I K    L + +G+ALVDMY+KCG + +A ++ + + E+  +++ AII G +L  K+
Sbjct: 483 HGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKS 542

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            D+  +FS M+ +G+ PD  T+  +L  C +   V  G++  AQM  +  LS  +   S 
Sbjct: 543 EDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLS-DVYITST 601

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           +VD+  + G + ++  + R  P   D V W A+      HG   +GE A
Sbjct: 602 LVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHG---LGEEA 646



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 148/561 (26%), Positives = 239/561 (42%), Gaps = 115/561 (20%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+  +F+ C++      G E   H++  GF   ++V N +I ++V C  L  A  VF+E 
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 141 CVRNLVSWN--------------------------------SLINGFVRSGFPREAIRLF 168
             R++VSWN                                SLI+G++++G  +++I +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
             M+   V  D  T+   +  C+ LED  LG +IH    + G    V   +AL+DMY KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
             LE + ++F                                +LP+K  + W+A I G V
Sbjct: 206 NSLEDSLDVF-------------------------------SELPDKNWISWSAAIAGCV 234

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           Q  +    L LF EMQ  GI     T      +C+ L A   G  +H    K +F  +V+
Sbjct: 235 QNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVI 294

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +GTA +DMYAKC N++ A ++F  +P+ N  +Y A+I G A + +   A   F ++    
Sbjct: 295 VGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNS 354

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSPKLKHYSCMVDLLGRSGLL 465
              DE++  G LSA      V +G     Q+  +     LS  +   + ++D+ G+ G L
Sbjct: 355 FSFDEVSLSGALSA----AAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGAL 410

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACR-------------------------LHGNV--- 497
            EA  L   M +  D V W A+  AC                           +G+V   
Sbjct: 411 VEASGLFDEMEI-RDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKA 469

Query: 498 SIGERAAMKLLELDPQ--DSGIYV------LLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
             G+RA    +E+  +   SG+ +       L +MY    M EEA K+   +EE+ +   
Sbjct: 470 CAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTM--- 526

Query: 550 PGCSSIEVNGLLYEFIVRDKS 570
                +  N ++  F ++ KS
Sbjct: 527 -----VSWNAIISGFSLQKKS 542


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 213/642 (33%), Positives = 330/642 (51%), Gaps = 100/642 (15%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKMREAVD 64
           L  H +  + LI  C  +  +   + T +LFN   NPN F +   +R +       + V 
Sbjct: 29  LHHHNYWVALLINHC--TRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVL 86

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI----------------------- 101
           +Y+QM +  G RPD F YP+L K   + G+ F  + +                       
Sbjct: 87  MYEQM-QGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGP 145

Query: 102 FGHVLKLG--------------------------------FDV----DMYVHNAVIHVFV 125
            GH  K+                                 FDV    ++    A++  + 
Sbjct: 146 IGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYA 205

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
              DL  A   FD    R++VSWN++++G+ ++G   EA+RLF +M    +EPDE T + 
Sbjct: 206 KVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVT 265

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++SAC+   D  L   +   + +  + L   +  AL+DMY                    
Sbjct: 266 VISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMY-------------------- 305

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-Q 304
                      AKFG LD ARK+F+ +P + VV WN++I GY Q  +S  A+ LF EM  
Sbjct: 306 -----------AKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMIT 354

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
           A  + PD VT V  +SAC  LGAL+ G W+ RF+ +    L++    A++ MY++CG++ 
Sbjct: 355 AKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSME 414

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A +VF EM  R+ ++Y  +I G A HG  ++AI+  S M   G+ PD +TF+G+L+AC 
Sbjct: 415 DAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACS 474

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GL++EGRK F  +       P + HY+CMVDLLGR G LE+A++ +  MPM     V+
Sbjct: 475 HAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVY 529

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
           G+L  A R+H  V +GE AA KL EL+P +SG ++LL+N+Y  +  W++  ++R+ M++ 
Sbjct: 530 GSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKG 589

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           GV+KT G S +E  G L++FIV D+SH   + IY  L++L +
Sbjct: 590 GVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRK 631


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 312/559 (55%), Gaps = 36/559 (6%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D+  K+   V +P++  WN  + G   +    EAV+ + +M+ +G  RPD  T   +  
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLP 220

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             A +    +G  +     K G     +V   +I ++  CGD+  A  +FD     +LV+
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           +N+LI+G+  +G    ++ LF ++    + P+  T++ ++   +      L + +H ++ 
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVL 340

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG T   P++ A+  ++ +   +ESA                               RK
Sbjct: 341 KSGFTANSPVSTAITTLHCRLNDMESA-------------------------------RK 369

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
            FD +PEK +  WNA+I GY Q   ++ A+ALF +M    ++P+ +T    LSAC+QLGA
Sbjct: 370 AFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGA 429

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L  G W+HR I +E+   NV + TAL+DMYAKCG+I++A ++F+ M  +N +++ A+I G
Sbjct: 430 LSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAG 489

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
             LHG+  +A+  + +M+   L+P   TFL +L AC HGGLV+EG K F  M+  + ++P
Sbjct: 490 YGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINP 549

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMK 506
            ++H +CMVDLLGR+G L+EA +LI   P +A    VWGAL  AC +H +  + + A+ K
Sbjct: 550 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQK 609

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L ELDP++SG YVLL+N++     + EA  VR+  + R + KTPG + IE+    + F+ 
Sbjct: 610 LFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMA 669

Query: 567 RDKSHPELEQIYDCLVQLT 585
            D++HP+ E IY  L +LT
Sbjct: 670 GDRAHPQSEAIYSYLEKLT 688



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 183/393 (46%), Gaps = 49/393 (12%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNV-QNPNSFSWNVAIRGFLETGKMRE 61
           +TGLIS       L + C   ES       + LF++ + P+  ++N  I G+   G +  
Sbjct: 250 LTGLIS-------LYSKCGDVES------ARCLFDMMEKPDLVAYNALISGYSVNGMVGS 296

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           +V+L+ +++   G  P++ T   L  V +  G   L   + G VLK GF  +  V  A+ 
Sbjct: 297 SVNLFTELM-TLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAIT 355

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            +     D+  A   FD    + + SWN++I+G+ ++G    A+ LF  M    V P+ +
Sbjct: 356 TLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPI 415

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+   +SACAQL  L+LG+ +H  I+E  L   V +  AL+DMY KCG +  A  IF++M
Sbjct: 416 TISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTM 475

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
            NK VVS   MI GY   G                               +  EAL L+ 
Sbjct: 476 DNKNVVSWNAMIAGYGLHG-------------------------------QGAEALKLYK 504

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKC 360
           +M    + P + T +  L ACS  G +++G  + R +  +   N  +   T +VD+  + 
Sbjct: 505 DMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRA 564

Query: 361 GNIAKALQVFHEMPER--NSLTYTAIIGGLALH 391
           G + +A ++  E P+       + A++G   +H
Sbjct: 565 GQLKEAFELISEFPKSAVGPGVWGALLGACMVH 597



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 176/385 (45%), Gaps = 38/385 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D +V +A+  ++     +  A  VFD     + V WN+L+ G   S    EA+  F  M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMV 203

Query: 173 LE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
            +  V PD  T+  ++ A A++ D+ +GR +H +  + GL     +   L+ +Y KCG +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           ESA                               R +FD + +  +V +NA+I GY    
Sbjct: 264 ESA-------------------------------RCLFDMMEKPDLVAYNALISGYSVNG 292

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
               ++ LF E+   G+ P++ T V  +   S  G       +H F+ K  F  N  + T
Sbjct: 293 MVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVST 352

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           A+  ++ +  ++  A + F  MPE+   ++ A+I G A +G    A++ F +M+ + + P
Sbjct: 353 AITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRP 412

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           + IT    LSAC   G +  G K+  ++ +   L P +   + ++D+  + G + EA ++
Sbjct: 413 NPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRI 471

Query: 472 IRSMPMAADVVVWGALFFACRLHGN 496
             +M    +VV W A+     LHG 
Sbjct: 472 FNTMD-NKNVVSWNAMIAGYGLHGQ 495


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 170/407 (41%), Positives = 265/407 (65%)

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           M+L  V PD  T   ++ AC +L D+  G+ IH    + G    + L N ++++Y  CG+
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +  A  +F+ M  +  V+   +I   AK G +D A   F  +P K V  W ++I G+VQ 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
            +  EA+ LF +++   ++P+ VT V  L+AC+ LG LD G  +H +  K  F  NV + 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
             L+DMY KCG +  A +VF+EM ER  ++++A+I GLA+HG+A +A+  FSEMI +G+ 
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P+ +TF+G+L AC H GL+DEGR++FA M++ + + P+++HY C+VDL  R+GLLEEA +
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
            I SMP+  + VVWGAL   C++H N+ + E A   L ELDP + G YV+++N+Y ++  
Sbjct: 301 FILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAER 360

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           WE+A +VRK+M++RGV+KT G SSI VNG+++EF+  D++HP+ E I
Sbjct: 361 WEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDI 407



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 73/367 (19%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           PD FT   + K C  L     G  I G   KLGF  ++++ N +++++  CG++G A  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 137 FDESCVRNLVSWN-------------------------------SLINGFVRSGFPREAI 165
           F++   R+ V+WN                               S+I+GFV+ G P EAI
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LF  ++ E V P+EVT++ +++ACA L DL+LGR +H Y ++SG    V + N L+DMY
Sbjct: 128 DLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMY 187

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           VKCG LE+A  +F  M  +TVVS + MI G A  G                         
Sbjct: 188 VKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHG------------------------- 222

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                 +++EAL LF EM   G+KP+ VT +  L ACS +G +D+G    RF      + 
Sbjct: 223 ------QAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEG---RRFFASMTADY 273

Query: 346 NVVLGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK---ALDA 397
            V+        +VD++++ G + +A +    MP + N + + A++GG  +H     A +A
Sbjct: 274 GVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEA 333

Query: 398 ISYFSEM 404
           I + SE+
Sbjct: 334 IKHLSEL 340



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 14/302 (4%)

Query: 17  IAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           I    +++  ++D        + N N  SW   I GF++ GK  EA+DL+ + L +   R
Sbjct: 81  IVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMK-LEDEAVR 139

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+  T   +   CA LG   LG  +  +  K GF  +++V N +I ++V CG L  A  V
Sbjct: 140 PNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRV 199

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           F E   R +VSW+++I G    G   EA+ LF +M    V+P+ VT IG++ AC+ +  +
Sbjct: 200 FYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLI 259

Query: 197 NLGREIHWYIS-ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIV 254
           + GR     ++ + G+   +     ++D++ + G LE A E   SM +    V    ++ 
Sbjct: 260 DEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLG 319

Query: 255 GYAKFGFLDIARKIFDDLPE-------KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           G      +D+A +    L E        YVV  N     Y +A+R ++A  +   M+  G
Sbjct: 320 GCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNI----YAEAERWEDAARVRKLMKDRG 375

Query: 308 IK 309
           +K
Sbjct: 376 VK 377


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 306/547 (55%), Gaps = 5/547 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  +WN     ++  G  ++ ++++++M  NG  +PD      +   C+ L     G  I
Sbjct: 307 NVITWNSLASCYVNCGFPQKGLNVFREMGLNG-VKPDPMAMSSILPACSQLKDLKSGKTI 365

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G  +K G   D++V  A+++++ +C  +  A  VFD    RN+V+WNSL + +V  GFP
Sbjct: 366 HGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFP 425

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           ++ + +FR+M L  V+PD VTM+ ++ AC+ L+DL  G+ IH +    G+   V + NAL
Sbjct: 426 QKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNAL 485

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV---- 277
           + +Y KC  +  A+ +FD + ++ V S   ++  Y      +    +F  +    V    
Sbjct: 486 LSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADE 545

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W+ +IGG V+  R +EA+ +F +MQ  G KPD  T    L ACS    L  G  IH +
Sbjct: 546 ITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCY 605

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           + +   + ++    ALVDMYAKCG ++ +  VF  MP ++  ++  +I    +HG   +A
Sbjct: 606 VFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEA 665

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +S F +M+   + PD  TF  +LSAC H  LV+EG + F  MS    + P+ +HY+C+VD
Sbjct: 666 LSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVD 725

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           +  R+G LEEA   I+ MPM    + W A    CR++ NV + + +A KL E+DP  S  
Sbjct: 726 IYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSAN 785

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YV L N+   + +W EA K+RK+M+ERG+ KTPGCS   V   ++ F+  DKS+ E ++I
Sbjct: 786 YVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKI 845

Query: 578 YDCLVQL 584
           Y+ L +L
Sbjct: 846 YNFLDEL 852



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 247/540 (45%), Gaps = 80/540 (14%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN     ++  G  ++ ++++++M+ +G  +PD  T   +   C+ L     G  I G 
Sbjct: 209 TWNSLSSCYVNCGFPQKGLNVFREMVLDG-VKPDPVTVSCILSACSDLQDLKSGKAIHGF 267

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            LK G   +++V NA+++++ SC  +  A  VFD    RN+++WNSL + +V  GFP++ 
Sbjct: 268 ALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKG 327

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +FR+M L  V+PD + M  ++ AC+QL+DL  G+ IH +  + G+   V +  AL+++
Sbjct: 328 LNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNL 387

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y  C  +  A+ +FD M                               P + VV WN++ 
Sbjct: 388 YANCLCVREAQTVFDLM-------------------------------PHRNVVTWNSLS 416

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
             YV     ++ L +F EM   G+KPD VT +  L ACS L  L  G  IH F  +    
Sbjct: 417 SCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMV 476

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPER---------------------------- 376
            +V +  AL+ +YAKC  + +A  VF  +P R                            
Sbjct: 477 EDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQM 536

Query: 377 -------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
                  + +T++ +IGG   + +  +A+  F +M  +G  PDE T   IL AC     +
Sbjct: 537 NRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECL 596

Query: 430 DEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             G++       +FR      L   + +VD+  + G L  +  +   MP+  DV  W  +
Sbjct: 597 RMGKEIHCY---VFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPI-KDVFSWNTM 652

Query: 488 FFACRLHGN----VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
            FA  +HGN    +S+ E+    LL +   DS  +  + +    S + EE  ++   M  
Sbjct: 653 IFANGMHGNGKEALSLFEKM---LLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSR 709



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 193/379 (50%), Gaps = 32/379 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN     ++  G  ++ ++++++M  N   + +  T   +   C+ L     G EI G 
Sbjct: 108 TWNSLSACYVNCGFPQQGLNVFRKMGLNK-VKANPLTVSSILPGCSDLQDLKSGKEIHGF 166

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V++ G   D++V +A ++ +  C  +  A  VFD    R++V+WNSL + +V  GFP++ 
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKG 226

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +FR+M L+ V+PD VT+  ++SAC+ L+DL  G+ IH +  + G+   V ++NAL+++
Sbjct: 227 LNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL 286

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y  C  +  A+ +FD M                               P + V+ WN++ 
Sbjct: 287 YESCLCVREAQAVFDLM-------------------------------PHRNVITWNSLA 315

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
             YV     ++ L +F EM   G+KPD +     L ACSQL  L  G  IH F  K    
Sbjct: 316 SCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMV 375

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            +V + TALV++YA C  + +A  VF  MP RN +T+ ++       G     ++ F EM
Sbjct: 376 EDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM 435

Query: 405 IGVGLMPDEITFLGILSAC 423
           +  G+ PD +T L IL AC
Sbjct: 436 VLNGVKPDLVTMLSILHAC 454



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 197/431 (45%), Gaps = 34/431 (7%)

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G   EA+ +Y    R  G +PD   +  + K CA+        +      + G   D+ +
Sbjct: 19  GLPNEAIKIYTSS-RARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            NA IH +  C  +  A  VFD+   R++V+WNSL   +V  GFP++ + +FR M L +V
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           + + +T+  ++  C+ L+DL  G+EIH ++   G+   V +++A ++ Y KC  +  A+ 
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD M                               P + VV WN++   YV     ++ 
Sbjct: 198 VFDLM-------------------------------PHRDVVTWNSLSSCYVNCGFPQKG 226

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L +F EM   G+KPD VT    LSACS L  L  G  IH F  K     NV +  ALV++
Sbjct: 227 LNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL 286

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y  C  + +A  VF  MP RN +T+ ++       G     ++ F EM   G+ PD +  
Sbjct: 287 YESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAM 346

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             IL AC     +  G K     +    +   +   + +V+L      + EA+ +   MP
Sbjct: 347 SSILPACSQLKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMP 405

Query: 477 MAADVVVWGAL 487
              +VV W +L
Sbjct: 406 H-RNVVTWNSL 415


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 313/562 (55%), Gaps = 5/562 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           + +   ++  N+  P+  + +  I      G   EA+ +Y   L+  G +PD   +    
Sbjct: 113 DFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS-LQERGIKPDMPVFLAAA 171

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K CA  G      E+     + G   D++V NA+IH +  C  +  A  VFD+  VR++V
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 231

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW SL + +V+ GFPR+ + +FR+M    V+P+ +T+  ++ ACA+L+DL  G+EIH + 
Sbjct: 232 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 291

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
              G+ + + + +AL+ +Y KC  +  A  +FD M ++ VVS   ++  Y K    +   
Sbjct: 292 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 351

Query: 267 KIFDDLPEKYV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            +F  +    V      WNA+IGG ++  RS+EA+ +F +MQ  G KP+ +T    L AC
Sbjct: 352 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 411

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           S    L  G  IH ++ +     ++   TAL+ MYAKCG++  +  VF  M  ++ + + 
Sbjct: 412 SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 471

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            +I   A+HG   +A+  F +M+   + P+ +TF G+LS C H  LV+EG + F  M   
Sbjct: 472 TMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 531

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             + P   HYSC+VD+  R+G L EA + I+ MPM      WGAL  ACR++ NV + + 
Sbjct: 532 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKI 591

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           +A KL E++P + G YV L N+   + MW EA +VR +M+ERG+ KTPGCS ++V   ++
Sbjct: 592 SAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVH 651

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
            F+V DKS+ E ++IY+ L +L
Sbjct: 652 TFVVGDKSNIESDKIYNFLDEL 673



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 194/451 (43%), Gaps = 68/451 (15%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           ++P+L +   S G  FL          L  ++  ++   +I V ++ GD   A  +FD  
Sbjct: 65  SFPVLKRFELSNGAEFLLSTEAMVPPSLPTNIPSHLGLRLIRVALNVGDFNRARQLFDNI 124

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
              +  + ++LI+     G   EAI+++  +Q   ++PD    +    ACA   D    +
Sbjct: 125 PQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVK 184

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           E+H   +  G+   V + NAL+  Y KC  +E A  +FD +V + VVS T++   Y K G
Sbjct: 185 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCG 244

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
           F                                ++ + +F EM  +G+KP+ +T    L 
Sbjct: 245 F-------------------------------PRKGMDVFREMGWSGVKPNPMTVSSILP 273

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL- 379
           AC++L  L  G  IH F  +    +N+ + +ALV +YAKC ++ +A  VF  MP R+ + 
Sbjct: 274 ACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVS 333

Query: 380 ----------------------------------TYTAIIGGLALHGKALDAISYFSEMI 405
                                             T+ A+IGG   +G++ +A+  F +M 
Sbjct: 334 WNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ 393

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
            +G  P+EIT   IL AC     +  G++    +   +++   L   + ++ +  + G L
Sbjct: 394 KMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDL 452

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             +  +   M    DVV W  +  A  +HGN
Sbjct: 453 NLSRNVF-DMMRRKDVVAWNTMIIANAMHGN 482


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 187/497 (37%), Positives = 295/497 (59%), Gaps = 14/497 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  + L+ G D   ++    I   +   DL  AC +FD+    ++  +N  I  F   G
Sbjct: 6   QIHAYSLRNGLDHTKFL----IEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIG 61

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P     L+  M  +   P++ +   +  ACA L ++  G+ +H +  +SG    +    
Sbjct: 62  HPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMT 121

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+DMY K G L SA ++FD M  + + +  ++I GYA+ G ++ A ++F+ +P + V+ 
Sbjct: 122 ALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVIS 181

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           W A+I GY Q  +  +AL +F  ++   G KP+ V+    L ACSQLGALD G  I  + 
Sbjct: 182 WTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYA 241

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM-PERNSLTYTAIIGGLALHGKALDA 397
               F  N  +  A+++++A+CGNI +A QVF E+  +RN  ++  +I GLA+HG+ +DA
Sbjct: 242 RNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDA 301

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  + +M+   + PD++TF+G+L AC HGG+V EGR+ F  M S F+++PKL+HY C+VD
Sbjct: 302 LQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVD 361

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L+EA  LI++MPMA D V+WG L  AC  HGNV +GE AA  L +L+P + G 
Sbjct: 362 LLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGN 421

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE---- 573
           YV+L+N+Y  +  W    ++RKMM+   + K  G S IEV   ++EFIV D+SH +    
Sbjct: 422 YVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHLKSGEI 481

Query: 574 ---LEQIYDCLVQLTRH 587
              L +IYD +++L +H
Sbjct: 482 YALLHKIYD-IIKLHKH 497



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 182/403 (45%), Gaps = 69/403 (17%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L Y   +   +  P+ + +N  I+ F   G       LY QM   G + P+ +++  LF
Sbjct: 31  DLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCS-PNQYSFTFLF 89

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASL   + G  +  H  K GF  DM+   A++ ++   G L  A  +FDE  VR++ 
Sbjct: 90  PACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIP 149

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERV------------------------------ 176
           +WNSLI G+ RSG    A+ LF  M +  V                              
Sbjct: 150 TWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEK 209

Query: 177 --EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             +P+EV++  ++ AC+QL  L++G+ I  Y   +G      ++NA+++++ +CG +E A
Sbjct: 210 GTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEA 269

Query: 235 EEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           +++FD + +K  + S  TMI+G A  G                               R 
Sbjct: 270 QQVFDEIGSKRNLCSWNTMIMGLAVHG-------------------------------RC 298

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT-- 351
            +AL L+ +M    ++PD VT V  L AC+  G + +G  +   +E + F +   L    
Sbjct: 299 IDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESK-FQVAPKLEHYG 357

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
            LVD+  + G + +A  +   MP   +S+ +  ++G  + HG 
Sbjct: 358 CLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGN 400


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 188/491 (38%), Positives = 288/491 (58%), Gaps = 6/491 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL--GLACNVFDESCVRNLVSWNSLINGFVR 157
           +I GHVL+ G D   Y+   +I      G      A  V +    RN   W ++I G+  
Sbjct: 67  QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
            G   EAI ++  M+ E + P   T   ++ AC  ++DLNLGR+ H           V +
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYV 186

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N ++DMYVKC  ++ A ++FD M  + V+S T +I  YA+ G ++ A ++F+ LP K +
Sbjct: 187 GNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDM 246

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V W A++ G+ Q  + +EAL  F  M+ +GI+ D VT    +SAC+QLGA        + 
Sbjct: 247 VAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQI 306

Query: 338 IEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +K  ++   +VV+G+AL+DMY+KCGN+ +A+ VF  M  +N  TY+++I GLA HG+A 
Sbjct: 307 AQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQ 366

Query: 396 DAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
           +A+  F  M+    + P+ +TF+G L AC H GLVD+GR+ F  M   F + P   HY+C
Sbjct: 367 EALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTC 426

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGR+G L+EA +LI++M +     VWGAL  ACR+H N  I E AA  L EL+P  
Sbjct: 427 MVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDI 486

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS-SIEVNGLLYEFIVRDKSHPE 573
            G Y+LL+N+Y  +  W    +VRK+++E+G++KTP  S  ++ NG +++F   + +HP 
Sbjct: 487 IGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPM 546

Query: 574 LEQIYDCLVQL 584
             +I D L +L
Sbjct: 547 SNKIQDKLEEL 557



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 177/399 (44%), Gaps = 70/399 (17%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y  +++  VQ  N F W   IRG+   GK  EA+ +Y  M R     P +FT+  L K C
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCM-RKEEITPVSFTFSALLKAC 159

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
            ++    LG +      +L     +YV N +I ++V C  +  A  VFDE   R+++SW 
Sbjct: 160 GTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWT 219

Query: 150 SLI-------------------------------NGFVRSGFPREAIRLFRDMQLERVEP 178
            LI                                GF ++  P+EA+  F  M+   +  
Sbjct: 220 ELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRA 279

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT--VPLANALMDMYVKCGKLESAEE 236
           DEVT+ G +SACAQL              +SG + +  V + +AL+DMY KCG +E A  
Sbjct: 280 DEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVN 339

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F SM NK V + ++MI+G A  G                               R++EA
Sbjct: 340 VFMSMNNKNVFTYSSMILGLATHG-------------------------------RAQEA 368

Query: 297 LALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TAL 353
           L LFH M   T IKP+ VT V  L ACS  G +D G  +   +  + F +       T +
Sbjct: 369 LHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSM-YQTFGVQPTRDHYTCM 427

Query: 354 VDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           VD+  + G + +AL++   M  E +   + A++G   +H
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIH 466



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 139/353 (39%), Gaps = 72/353 (20%)

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E+ +  ++S      +LN  ++IH ++   GL  +  +   L+    K G          
Sbjct: 46  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLG---------- 95

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                                    AR++ + +  +    W A+I GY    +  EA+A+
Sbjct: 96  -------------------VPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAM 136

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN----VVLGTALVD 355
           +  M+   I P + T    L AC  +  L+ G   H     + F L     V +G  ++D
Sbjct: 137 YGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFH----AQTFRLRGFCFVYVGNTMID 192

Query: 356 MYAKCGNIAKALQVFHEMPERNSLT-------------------------------YTAI 384
           MY KC +I  A +VF EMPER+ ++                               +TA+
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM 252

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK--YFAQMSSI 442
           + G A + K  +A+ YF  M   G+  DE+T  G +SAC   G      +    AQ S  
Sbjct: 253 VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSG- 311

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +  S  +   S ++D+  + G +EEA  +  SM    +V  + ++      HG
Sbjct: 312 YSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVFTYSSMILGLATHG 363



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           + LIA  A +   N++   ++  ++   +  +W   + GF +  K +EA++ + +M ++ 
Sbjct: 219 TELIA--AYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKS- 275

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV--HNAVIHVFVSCGDLG 131
           G R D  T       CA LG             K G+    +V   +A+I ++  CG++ 
Sbjct: 276 GIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVE 335

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSAC 190
            A NVF     +N+ +++S+I G    G  +EA+ LF  M  +  ++P+ VT +G + AC
Sbjct: 336 EAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMAC 395

Query: 191 AQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +    ++ GR++   + ++ G+  T      ++D+  + G+L+ A E+  +M
Sbjct: 396 SHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTM 447


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 312/591 (52%), Gaps = 11/591 (1%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPN---SFSWNVAIRGFLETGKMR 60
           T +IS GF    +I    ++   N D         +N N      WN+ I  ++  G   
Sbjct: 117 TLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHG 176

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           EA+  YKQM   G  RPD FTYP + K C   L + F G ++   +       +++VHN+
Sbjct: 177 EALSAYKQMTHKG-IRPDKFTYPSVLKACGEKLDIAF-GKKLHASINASCLGWNLFVHNS 234

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ ++   G+L  A  +F+    R+ VSWN++I+G+   G  +EA  LF  M++E +E +
Sbjct: 235 LVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELN 294

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            +T   +   C Q  +     E+  ++   G+ +        +      G ++   EI  
Sbjct: 295 IITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHG 354

Query: 240 SMVNKTVVSC----TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           S +             +I  Y++  +L  A  +F     K ++ WN+++ GY    RS+E
Sbjct: 355 SAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEE 414

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALV 354
           A  LF EM  +GI+P+ VT    L  C+++  L  G   H +I  +  F   ++L  +LV
Sbjct: 415 ASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLV 474

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           DMYA+ G + +A ++F  +  R+ +TYT++I G  + G+  +A+  F EM    + PD +
Sbjct: 475 DMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHV 534

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           T + +LSAC H GLV EG K F  M S + + P+L+H++CMVDL GR+GLL +A+++I  
Sbjct: 535 TMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITR 594

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MP      +W  L  ACR+HGN  IGE AA KLLE+ P++SG YVL+ANMY  +  W + 
Sbjct: 595 MPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKL 654

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            KVR  M + GV K PGC+ ++V    + F+V D S P + ++Y  L  LT
Sbjct: 655 AKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLT 705



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 234/469 (49%), Gaps = 13/469 (2%)

Query: 49  AIRGFLETGKMREAVDLYKQMLRNGG--TRPDNFTYPLLFKVCASLGLRFL--GYEIFGH 104
           +++GF   G + +A   +  + R+    T  D   + +   + + + L+ L  G ++   
Sbjct: 59  SLKGFASQGNLLKAFKTFSLIQRHASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTL 118

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           ++ LGF+    +   ++  + +   L  A  + + S + + + WN LI+ +VR+G   EA
Sbjct: 119 IISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEA 178

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           +  ++ M  + + PD+ T   ++ AC +  D+  G+++H  I+ S L   + + N+L+ M
Sbjct: 179 LSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSM 238

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP----EKYVVPW 280
           Y K G+L +A  +F++M+ +  VS  TMI GYA  G    A ++F  +     E  ++ W
Sbjct: 239 YAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITW 298

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N I GG VQ+   +EAL L   M++ GI  D+V T+  L ACS +GA+  G  IH    +
Sbjct: 299 NTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIR 358

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             ++    +  AL+ MY++C  +  A  +F     +N +T+ +++ G     ++ +A   
Sbjct: 359 SFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFL 418

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F EM+  G+ P+ +T   IL  C     +  G+++   +         L  ++ +VD+  
Sbjct: 419 FREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYA 478

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           RSG + EA++L  S+    D V + +L     + G      R A+KL +
Sbjct: 479 RSGKVLEAKRLFDSISR-RDEVTYTSLIAGYGIQGE----GREALKLFD 522


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 307/586 (52%), Gaps = 72/586 (12%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLR 95
           N+ +P  F WN+ I  ++  G  ++A+  YKQM++ G  RPDNFTYP + K C   L L 
Sbjct: 162 NILHP--FPWNLLISSYVRNGFCQKALSAYKQMVKKG-IRPDNFTYPSVLKACGEELDLG 218

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F G E+   +        + VHNA+I ++  CG +G+A ++FD+   R+ VSWNS+I+ +
Sbjct: 219 F-GKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVY 277

Query: 156 VRSGFPREAIRLFRDMQLERVEP-----------------------------------DE 180
              G   EA  LF  M  E +E                                    D 
Sbjct: 278 ASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDS 337

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           V +I  + AC+ + D  LG+EIH +   S       + NAL+ MY +C  L+ A  +F  
Sbjct: 338 VALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQL 397

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K++++                               WN+II G     RS+EA  L 
Sbjct: 398 MEAKSLIT-------------------------------WNSIISGCCHMDRSEEASFLL 426

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMYAK 359
            EM   GI+P+ VT    L  C+++  L  G   H ++  +E+F  +++L  ALVDMYA+
Sbjct: 427 REMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYAR 486

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
            G + +A +VF  + ER+ +TYT++I G  + G+   A+  F EM    + PD IT + +
Sbjct: 487 SGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAV 546

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSAC H GLV +G+  F +M S++ L+P L+H++CM DL GR+GLL +A+++IR+MP   
Sbjct: 547 LSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKP 606

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              +W  L  ACR+H N  IGE AA KLLE+ P++ G YVL+ANMY  +  W +  KVR 
Sbjct: 607 TPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRI 666

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            M + GV K PGC+ ++V      F+V D S+   ++IY  L  LT
Sbjct: 667 FMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLT 712



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 228/470 (48%), Gaps = 14/470 (2%)

Query: 48  VAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPL--LFKVCASLGLRFLGYEIFGH 104
            +++ F   G + +A      + L       D   +P+  L   C  +     G ++ GH
Sbjct: 66  TSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGH 125

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRSGFPRE 163
           ++ LGF+    +   ++  F S  +L +  +V  E S + +   WN LI+ +VR+GF ++
Sbjct: 126 IISLGFEQHPILVPKLV-TFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQK 184

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+  ++ M  + + PD  T   ++ AC +  DL  G+E+H  I+ S +  ++ + NAL+ 
Sbjct: 185 ALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALIS 244

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL----PEKYVVP 279
           MY KCGK+  A ++FD +  +  VS  +MI  YA  G  + A ++F  +     E  ++ 
Sbjct: 245 MYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 304

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN I GGY++    K AL L  +M+  G   D+V  +  L ACS +G    G  IH F  
Sbjct: 305 WNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 364

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +  F     +  AL+ MY++C ++  A  +F  M  ++ +T+ +II G     ++ +A  
Sbjct: 365 RSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASF 424

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
              EM+  G+ P+ +T   +L  C     +  G+++   M+        L  ++ +VD+ 
Sbjct: 425 LLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 484

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
            RSG + EA ++   M    D + + ++     + G      +AA+KL E
Sbjct: 485 ARSGKVLEARRVF-DMLGERDKMTYTSMIAGYGMQGE----GQAALKLFE 529



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 23  SESKNLDYCTKILFNVQNPNSF-SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           S  K+L +   +LF +    S  +WN  I G     +  EA  L ++ML   G  P+  T
Sbjct: 383 SRCKDLKHAY-LLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLL-FGIEPNYVT 440

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
              +  +CA +     G E   ++ +   F   + + NA++ ++   G +  A  VFD  
Sbjct: 441 IASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDML 500

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R+ +++ S+I G+   G  + A++LF +M   +++PD +TMI ++SAC+    +  G+
Sbjct: 501 GERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQ 560

Query: 201 EIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            +   + S  GLT  +     + D++ + G L  A+EI  +M  K   +    ++G
Sbjct: 561 LLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIG 616


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 313/562 (55%), Gaps = 5/562 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           + +   ++  N+  P+  + +  I      G   EA+ +Y   L+  G +PD   +    
Sbjct: 27  DFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS-LQERGIKPDMPVFLAAA 85

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K CA  G      E+     + G   D++V NA+IH +  C  +  A  VFD+  VR++V
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 145

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW SL + +V+ GFPR+ + +FR+M    V+P+ +T+  ++ ACA+L+DL  G+EIH + 
Sbjct: 146 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 205

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
              G+ + + + +AL+ +Y KC  +  A  +FD M ++ VVS   ++  Y K    +   
Sbjct: 206 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 265

Query: 267 KIFDDLPEKYV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            +F  +    V      WNA+IGG ++  RS+EA+ +F +MQ  G KP+ +T    L AC
Sbjct: 266 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 325

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           S    L  G  IH ++ +     ++   TAL+ MYAKCG++  +  VF  M  ++ + + 
Sbjct: 326 SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 385

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            +I   A+HG   +A+  F +M+   + P+ +TF G+LS C H  LV+EG + F  M   
Sbjct: 386 TMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 445

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             + P   HYSC+VD+  R+G L EA + I+ MPM      WGAL  ACR++ NV + + 
Sbjct: 446 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKI 505

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           +A KL E++P + G YV L N+   + MW EA +VR +M+ERG+ KTPGCS ++V   ++
Sbjct: 506 SAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVH 565

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
            F+V DKS+ E ++IY+ L +L
Sbjct: 566 TFVVGDKSNIESDKIYNFLDEL 587



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 179/412 (43%), Gaps = 68/412 (16%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I V ++ GD   A  +FD     +  + ++LI+     G   EAI+++  +Q   ++PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
               +    ACA   D    +E+H   +  G+   V + NAL+  Y KC  +E A  +FD
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            +V + VVS T++   Y K GF                                ++ + +
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGF-------------------------------PRKGMDV 166

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F EM  +G+KP+ +T    L AC++L  L  G  IH F  +    +N+ + +ALV +YAK
Sbjct: 167 FREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAK 226

Query: 360 CGNIAKALQVFHEMPERNSL-----------------------------------TYTAI 384
           C ++ +A  VF  MP R+ +                                   T+ A+
Sbjct: 227 CLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAV 286

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           IGG   +G++ +A+  F +M  +G  P+EIT   IL AC     +  G++    +   ++
Sbjct: 287 IGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWK 346

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           +   L   + ++ +  + G L  +  +   M    DVV W  +  A  +HGN
Sbjct: 347 VG-DLTSTTALLYMYAKCGDLNLSRNVF-DMMRRKDVVAWNTMIIANAMHGN 396



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           N+   LG  L+ +    G+  +A Q+F  +P+ +  T + +I  L  HG + +AI  +S 
Sbjct: 9   NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 68

Query: 404 MIGVGLMPDEITFLGILSACCHGG------LVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +   G+ PD   FL    AC   G       V +       MS +F  +  +  Y     
Sbjct: 69  LQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAY----- 123

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             G+   +E A ++   + +  DVV W +L
Sbjct: 124 --GKCKCVEGARRVFDDL-VVRDVVSWTSL 150


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/577 (33%), Positives = 317/577 (54%), Gaps = 42/577 (7%)

Query: 5   GLISHGFAPSRLI---AFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMR 60
           G  S  F  + LI   + C  +E      C + +F+ ++  +  SW   +  ++E     
Sbjct: 175 GFDSDAFVGTALIDCYSVCGYAE------CARQVFDAIEYKDMVSWTGMVACYVENECFE 228

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           E++ L+ +M R  G +P+NFT+  + K C  L +  +G  + G   K  +  +++V   +
Sbjct: 229 ESLKLFSRM-RIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVEL 287

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I +++  GD+  A  VF+E    +++ W+ +I  + +S    EAI +F  M+   V P++
Sbjct: 288 IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T+  ++ ACA L DL LG +IH ++ + GL + V ++NALMDMY KCG++E++      
Sbjct: 348 FTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENS------ 401

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                     ++F + P    V WN +I GYVQA   ++AL LF
Sbjct: 402 -------------------------LQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILF 436

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            +M    ++   VT    L AC+ + AL+ G  IH    K  ++ N V+G AL+DMYAKC
Sbjct: 437 KDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKC 496

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           GNI  A  VF  + E + +++ A+I G ++HG   +A+  F  M+     PD++TF+GIL
Sbjct: 497 GNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGIL 556

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           SAC + GL+D G+ YF  M   + + P  +HY+CMV LLGRSG L++A +L+  +P    
Sbjct: 557 SACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPS 616

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           V+VW AL  AC +H +V +G  +A ++LE++P+D   +VLL+N+Y ++  W     +R  
Sbjct: 617 VMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTS 676

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           M+ +G+ K PG S IE  G ++ F V D SHP+ + I
Sbjct: 677 MKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLI 713



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 235/486 (48%), Gaps = 38/486 (7%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           FA + L+ F    +S  L    K+   + + N+ S+   I+G+ +  +  EA+ L+ + L
Sbjct: 80  FANNILLNFYVKYDS--LPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSR-L 136

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
           +  G   + F +  + K+  S     LG+ +   V KLGFD D +V  A+I  +  CG  
Sbjct: 137 QGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYA 196

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  VFD    +++VSW  ++  +V +    E+++LF  M++   +P+  T   ++ AC
Sbjct: 197 ECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC 256

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
             LE  N+G+ +H    ++     + +   L+D+Y+K G ++ A ++F+ M         
Sbjct: 257 VGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM--------- 307

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                 P+  V+PW+ +I  Y Q+++S+EA+ +F  M+   + P
Sbjct: 308 ----------------------PKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLP 345

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +  T    L AC+ L  L  G  IH  + K   ++NV +  AL+DMYAKCG +  +LQ+F
Sbjct: 346 NQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLF 405

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
            E P    +++  +I G    G    A+  F +M+   +   E+T+  +L AC     ++
Sbjct: 406 SESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALE 465

Query: 431 EGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            G +  +  + +I+  +  +   + ++D+  + G +++A +L+  M    D V W A+  
Sbjct: 466 PGSQIHSLSVKTIYDKNTVVG--NALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMIS 522

Query: 490 ACRLHG 495
              +HG
Sbjct: 523 GYSVHG 528



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 213/497 (42%), Gaps = 58/497 (11%)

Query: 38  VQNPNSFSWNVAI-----RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +Q+PN    N A+     R FL             Q   +     + + Y  L + C   
Sbjct: 10  LQHPNHCKSNTALCIITQRSFL------------AQRTSHSSPEFNTYIYGSLLQSCIRN 57

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  +   ++K G  +D++ +N +++ +V    L  A  +FDE   RN VS+ +LI
Sbjct: 58  GDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLI 117

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ +     EAI LF  +Q E  E +      ++      E   LG  +H  + + G  
Sbjct: 118 QGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFD 177

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  AL+D Y  CG  E A ++FD++  K +VS                        
Sbjct: 178 SDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS------------------------ 213

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  W  ++  YV+ +  +E+L LF  M+  G KP+  T    L AC  L   + G 
Sbjct: 214 -------WTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGK 266

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H    K ++   + +G  L+D+Y K G++  ALQVF EMP+ + + ++ +I   A   
Sbjct: 267 AVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSE 326

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD--EGRKYFAQMSSIFRLSPKLK 450
           ++ +AI  F  M    ++P++ T   +L AC    LVD   G +    +  +  L   + 
Sbjct: 327 QSEEAIEMFCRMRRGLVLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVKV-GLDMNVF 383

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE- 509
             + ++D+  + G +E + QL    P   D V W  +       GN   GE+A +   + 
Sbjct: 384 VSNALMDMYAKCGRMENSLQLFSESPNCTD-VSWNTVIVGYVQAGN---GEKALILFKDM 439

Query: 510 LDPQDSGIYVLLANMYR 526
           L+ Q  G  V  +++ R
Sbjct: 440 LECQVQGTEVTYSSVLR 456


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 195/537 (36%), Positives = 302/537 (56%), Gaps = 36/537 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  + G     +  EAV L+ +M+  G    D  T   +  +C  LG + L   +  +
Sbjct: 136 AWNAMLSGLCRNARAAEAVGLFGRMVGEG-VAGDTVTVSSVLPMCVLLGDQVLALVMHVY 194

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G D +++V NA+I V+   G L  A  VF     R+LV+WNS+I+G  + G    A
Sbjct: 195 AVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAA 254

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMD 223
           +++F+ M+   V PD +T++ + SA AQ  D    + +H Y+   G  +   +A NA++D
Sbjct: 255 LKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVD 314

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY K   +E+A+                               ++FD +P +  V WN +
Sbjct: 315 MYAKLSNIEAAQ-------------------------------RMFDSMPVQDSVSWNTL 343

Query: 284 IGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY+Q   + EA+  +  MQ   G+K    T V  L A S LGAL  G+ +H    K  
Sbjct: 344 ITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIG 403

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            N++V +GT L+D+YAKCG +A+A+ +F +MP R++  + AII GL +HG   +A++ FS
Sbjct: 404 LNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFS 463

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
            M   G+ PD +TF+ +L+AC H GLVD+GR +F  M   + + P  KHY+CM D+LGR+
Sbjct: 464 RMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRA 523

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G L+EA   I++MP+  D  VWGAL  ACR+HGNV +G+ A+  L ELDP++ G YVL++
Sbjct: 524 GQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMS 583

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS--HPELEQI 577
           NMY     W+   +VR ++  + ++KTPG SSIEV   +  F   +++  HP+ E+I
Sbjct: 584 NMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEI 640



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 215/454 (47%), Gaps = 40/454 (8%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           N  I  F      R A  L + +L      RPD FT+P L +   S        ++    
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPS---NASAAQLHACA 93

Query: 106 LKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           L+LG     ++   +++H ++  G +  A  VFDE   R++ +WN++++G  R+    EA
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF  M  E V  D VT+  ++  C  L D  L   +H Y  + GL   + + NAL+D+
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDV 213

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y K G LE A+ +F  M  + +V+                               WN+II
Sbjct: 214 YGKLGMLEEAQCVFHGMECRDLVT-------------------------------WNSII 242

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            G  Q  ++  AL +F  M+ +G+ PD +T V   SA +Q G       +H ++ +  ++
Sbjct: 243 SGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD 302

Query: 345 L-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           + +++ G A+VDMYAK  NI  A ++F  MP ++S+++  +I G   +G A +A+  +  
Sbjct: 303 VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGH 362

Query: 404 MIG-VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           M    GL   + TF+ +L A  H G + +G +  A +S    L+  +   +C++DL  + 
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA-LSIKIGLNVDVYVGTCLIDLYAKC 421

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           G L EA  L   MP  +    W A+     +HG+
Sbjct: 422 GKLAEAMLLFEKMPRRS-TGPWNAIISGLGVHGH 454


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 274/448 (61%), Gaps = 13/448 (2%)

Query: 148 WNSLINGFVRS-----GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           WN+LI    RS      FP  A+ L+  M+L  V PD  T   ++ +   +   + GR++
Sbjct: 27  WNNLIRASTRSRVQNPAFP-PALSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQL 82

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  I   GL     +  +L++MY  CG    A + FD +    + S   +I   AK G +
Sbjct: 83  HAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMI 142

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA---TGIKPDAVTTVHCL 319
            IARK+FD +PEK V+ W+ +I GYV     K AL+LF  +Q    + ++P+  T    L
Sbjct: 143 HIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVL 202

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM-PERNS 378
           SAC++LGAL  G W+H +I+K    ++VVLGT+L+DMYAKCG+I +A  +F  + PE++ 
Sbjct: 203 SACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDV 262

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + ++A+I   ++HG + + +  F+ M+  G+ P+ +TF+ +L AC HGGLV EG +YF +
Sbjct: 263 MAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKR 322

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M + + +SP ++HY CMVDL  R+G +E+A  +++SMPM  DV++WGAL    R+HG+V 
Sbjct: 323 MMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVE 382

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
             E A  KLLELDP +S  YVLL+N+Y     W E   +R +ME RG++K PGCS +EV+
Sbjct: 383 TCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVD 442

Query: 559 GLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           G++ EF   D SHPEL  +Y  L ++ +
Sbjct: 443 GVIREFFAGDNSHPELLNLYVMLDEIMK 470



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 186/404 (46%), Gaps = 76/404 (18%)

Query: 31  CTKILFNVQNPN--SFSWNVAIRGF----LETGKMREAVDLYKQMLRNGGTRPDNFTYPL 84
           CT    ++ +PN  SF WN  IR      ++      A+ LY +M R     PD  T+P 
Sbjct: 10  CTHPSLHLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRM-RLHAVLPDLHTFPF 68

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L +   S+     G ++   +L LG   D +V  ++I+++ SCG    A   FDE    +
Sbjct: 69  LLQ---SINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPD 125

Query: 145 LVSWNS-------------------------------LINGFVRSGFPREAIRLFRDMQL 173
           L SWN+                               +I+G+V  G  + A+ LFR +Q 
Sbjct: 126 LPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQT 185

Query: 174 ---ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
               ++ P+E TM  ++SACA+L  L  G+ +H YI ++G+ + V L  +L+DMY KCG 
Sbjct: 186 LEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGS 245

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +E A+ IFD++                               PEK V+ W+A+I  +   
Sbjct: 246 IERAKCIFDNLG------------------------------PEKDVMAWSAMITAFSMH 275

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVL 349
             S+E L LF  M   G++P+AVT V  L AC   G + +G  +  R + +   +  +  
Sbjct: 276 GLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQH 335

Query: 350 GTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
              +VD+Y++ G I  A  V   MP E + + + A++ G  +HG
Sbjct: 336 YGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 218/660 (33%), Positives = 330/660 (50%), Gaps = 87/660 (13%)

Query: 6   LISHGFAP-----SRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETG-- 57
           +I+ GF P     +RLI  +C  SE   LDY  ++   +  P+  +    + G+  +G  
Sbjct: 40  IITFGFQPHAHILNRLIDVYCKSSE---LDYARQLFDEISEPDKIARTTMVSGYCASGDI 96

Query: 58  ------------KMREAVDLYKQM-------------------LRNGGTRPDNFTYPLLF 86
                        MR+ V +Y  M                   +++ G +PD+FTY    
Sbjct: 97  ALARSVFEETPVSMRDTV-MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYA--- 152

Query: 87  KVCASLGL----RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD----LGLACNVFD 138
            V A L L         +     LK G      V NA++ V+  C      L  A  VFD
Sbjct: 153 SVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFD 212

Query: 139 E--------------SCVRN------------------LVSWNSLINGFVRSGFPREAIR 166
           +                V+N                  LV++N++I+G+V  G  +EA+ 
Sbjct: 213 DIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALE 272

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           + R M    +E DE T   ++ ACA    L LG+++H Y+       +    N+L+ +Y 
Sbjct: 273 MVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYY 331

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KCGK   A  IF+ M  K +VS   ++ GY   G +  A+ IF ++ EK ++ W  +I G
Sbjct: 332 KCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISG 391

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
             +    +E L LF  M+  G +P        + +C+ LGA  +G   H  + K  F+ +
Sbjct: 392 LAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSS 451

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           +  G AL+ MYAKCG + +A QVF  MP  +S+++ A+I  L  HG  ++A+  + EM+ 
Sbjct: 452 LSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLK 511

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            G+ PD ITFL +L+AC H GLVD+GRKYF  M +++R+ P   HY+ ++DLL RSG   
Sbjct: 512 KGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFS 571

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526
           EAE +I S+P      +W AL   CR+HGN+ +G  AA KL  L P+  G Y+LL+NMY 
Sbjct: 572 EAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYA 631

Query: 527 DSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            +  WEE  +VRK+M +RGV+K   CS IE+   ++ F+V D SHPE E +Y  L  L +
Sbjct: 632 ATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGK 691



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 175/396 (44%), Gaps = 55/396 (13%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L L R +H  I   G      + N L+D+Y K  +L+ A ++FD +     ++ TTM+ G
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 256 YAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
           Y   G + +AR +F++ P   +  V +NA+I G+        A+ LF +M+  G KPD  
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 314 TTVHCLSACSQLGALDDG---IWIHRFIEKENFNLNVVLGTALVDMYAKCGN----IAKA 366
           T    L+  + +  +DD    +  H    K        +  ALV +Y++C +    +  A
Sbjct: 150 TYASVLAGLALV--VDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSA 207

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHG---------KALD--------------------- 396
            +VF ++PE++  ++T ++ G   +G         K +D                     
Sbjct: 208 RKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLY 267

Query: 397 --AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY-S 453
             A+     M+  G+  DE T+  ++ AC +  L+  G++  A    + R      H+ +
Sbjct: 268 QEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAY---VLRREDFSFHFDN 324

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
            +V L  + G   EA  +   MP A D+V W AL     L G VS G     KL+  + +
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMP-AKDLVSWNAL-----LSGYVSSGHIGEAKLIFKEMK 378

Query: 514 DSGI--YVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           +  I  ++++ +   ++   EE  K+   M+  G E
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 210/647 (32%), Positives = 329/647 (50%), Gaps = 76/647 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
             L SH +  S L+  C    + +  Y   I  +  +P++  ++  ++ +   G   + V
Sbjct: 27  NSLHSHNYWVSLLLINCTRLHA-HPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVV 85

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDM 114
            L+K    +   RP  F Y  L K+    G  F  Y     VLKLG           +DM
Sbjct: 86  SLFK-CTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY-----VLKLGHIDDHFIRNAILDM 139

Query: 115 YVHNAVIHV--------------------------------------------------- 123
           Y  N  + +                                                   
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMV 199

Query: 124 --FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
             +   GDL  A   FDE   R++VSWN++ + + +   P+EA+ LF  M  E + PD+ 
Sbjct: 200 TGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDT 259

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T +  +S+C+ + D  L   I   I +  + L   +  AL+DM+ K G LE A  IFD +
Sbjct: 260 TWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDEL 319

Query: 242 -VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
              +  V+   MI  Y + G L +AR++FD++P++ VV WN++I GY Q   S  ++ LF
Sbjct: 320 GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELF 379

Query: 301 HEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
            EM     I+PD VT    LSAC  +GAL    W+   + ++N  L +    +L+ MY+K
Sbjct: 380 KEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSK 439

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++A A ++F  M  R+ +++  +I G A +G   +AI     M   G+ PD +T++G+
Sbjct: 440 CGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGV 499

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GL++EG+  F  + +     P + HY+CMVDLLGR+G L+EA+ LI+SMPM  
Sbjct: 500 LTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKP 554

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              V+G+L  A R+H  V +GE AA KL EL+PQ+ G YVLL+N+Y     WE+  +VR+
Sbjct: 555 HAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVRE 614

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           MM++ G++K+ G S +E  G +++F V D+SH + + IY  L +L R
Sbjct: 615 MMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELER 661


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 322/575 (56%), Gaps = 15/575 (2%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNP-----NSFSWNVAIRGFLE 55
           +  TGLI      ++++   + S+   L    + +F+  +      + F WN  I+    
Sbjct: 3   LXXTGLIXSSNLTTKIVLAFSDSQRTYLSDFARCIFHEYHHHEEVEDPFLWNAVIKSHSH 62

Query: 56  TGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115
               R+A+ L   M+ N     D F+  L+ K C+ LG    G +I G + K     D++
Sbjct: 63  GVDPRQALFLLCSMIENN-VPVDKFSLSLVTKACSRLGFAKEGMQIHGFLTKTVICSDLF 121

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
           + N +I +++ C  LG A  VFD    R+ VS+NS+I+G+V+ G    A  LF  M  E+
Sbjct: 122 LQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEK 181

Query: 176 VEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
              + ++   M+   AQ ED +++  ++   + E  L       N+L+D YVK G++E A
Sbjct: 182 --KNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISW----NSLIDGYVKHGRIEDA 235

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
           + +FD M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++GGYVQ K   
Sbjct: 236 KGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHM 295

Query: 295 EALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
           EAL +F++M+  + + PD  T V  LSA +QLG L   + IH +I ++ F L+  LG AL
Sbjct: 296 EALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVAL 355

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           +DMY+KCG+I +A+ VF  +  ++   + A+IGGLA+HG    A     E+    + PD 
Sbjct: 356 IDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDY 415

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CMVDLL RSG +E A+ LI 
Sbjct: 416 ITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLIS 475

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP-QDSGIYVLLANMYRDSNMWE 532
            MP+  + V+W     AC  H      E    + L L    +   YVLL+NMY    MWE
Sbjct: 476 EMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMYASFEMWE 535

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           +  +VR MM+ER +EK PGCS IE++G ++EF+ R
Sbjct: 536 DVRRVRTMMKERKIEKVPGCSWIELDGKVHEFLCR 570


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 201/593 (33%), Positives = 322/593 (54%), Gaps = 48/593 (8%)

Query: 4   TGLISHGFAPSRLI-------AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           T +I  G+  SRLI       ++C   +S  LD   ++   +   +S S+N  I G+ + 
Sbjct: 173 TQIIKLGY-DSRLIVGNTLVDSYC---KSNRLDLACQLFKEMPEIDSVSYNAMITGYSKD 228

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR--FLGYEIFGHVLKLGFDVDM 114
           G   +AV+L+ +M +N G +P  FT+  +  +CA++GL    LG +I   V+K  F  ++
Sbjct: 229 GLDEKAVNLFVEM-QNSGLKPTEFTFAAV--LCANIGLDDIVLGQQIHSFVIKTNFVWNV 285

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           +V NA++  +     +  A  +FDE   ++ VS+N +I+G+   G  + A  LFR++Q  
Sbjct: 286 FVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFT 345

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             +  +     M+S  +   D  +GR+IH     +     + + N+L+DMY KCGK E A
Sbjct: 346 AFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 405

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
           E                                IF +L  +  VPW A+I  YVQ    +
Sbjct: 406 E-------------------------------MIFTNLTHRSAVPWTAMISAYVQKGFYE 434

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           E L LF++M+   +  D  T    L A + + +L  G  +H FI K  F  NV  G+AL+
Sbjct: 435 EGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALL 494

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           D+YAKCG+I  A+Q F EMP+RN +++ A+I   A +G+A   +  F EM+  GL PD +
Sbjct: 495 DVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSV 554

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           +FLG+LSAC H GLV+EG  +F  M+ I++L P+ +HY+ +VD+L RSG   EAE+L+  
Sbjct: 555 SFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAE 614

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP-QDSGIYVLLANMYRDSNMWEE 533
           MP+  D ++W ++  ACR+H N  +  RAA +L  ++  +D+  YV ++N+Y  +  WE 
Sbjct: 615 MPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWEN 674

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             KV K M +RGV+K P  S +E+    + F   D+ HP++E+I   +  LT+
Sbjct: 675 VSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTK 727



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 191/400 (47%), Gaps = 22/400 (5%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   ++K GFD D    N  +  F+  G+L  A  +F++   +N VS N +I+G+V+SG 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             EA +LF  M    VE   VT   ++   +QL       E+   +   G   T P    
Sbjct: 99  LGEARKLFDGM----VERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG---TEPDYVT 151

Query: 221 LMDMYVKCGKLESAEEIFDSMV-------NKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + +   C   E   +I            +  ++   T++  Y K   LD+A ++F ++P
Sbjct: 152 FVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 211

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD--- 330
           E   V +NA+I GY +    ++A+ LF EMQ +G+KP   T    L  C+ +G LDD   
Sbjct: 212 EIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIG-LDDIVL 268

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH F+ K NF  NV +  AL+D Y+K  ++  A ++F EMPE++ ++Y  II G A 
Sbjct: 269 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 328

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            GK   A   F E+        +  F  +LS   +    + GR+  AQ + +     ++ 
Sbjct: 329 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ-TIVTTADSEIL 387

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
             + +VD+  + G  EEAE +  ++   +  V W A+  A
Sbjct: 388 VGNSLVDMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMISA 426



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 125/235 (53%), Gaps = 2/235 (0%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           LN+   I   I ++G       +N  +  ++K G+L  A ++F+ M +K  VS   MI G
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y K G L  ARK+FD + E+  V W  +IGGY Q  + KEA  LF +MQ  G +PD VT 
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           V  LS C+     +    +   I K  ++  +++G  LVD Y K   +  A Q+F EMPE
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE 212

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
            +S++Y A+I G +  G    A++ F EM   GL P E TF  +L  C + GL D
Sbjct: 213 IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD 265


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 176/438 (40%), Positives = 257/438 (58%), Gaps = 31/438 (7%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NS+I  +  S     ++ ++  M    + PD  T   ++ + AQL    LG+ IH  I +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    V ++ AL++MY  C  +  A                               R++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDA-------------------------------RQV 199

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD++P++ +V WNA+I GY   +  ++ + +F EMQ  G KP  VT V  L AC+ LGAL
Sbjct: 200 FDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G WI  +I+     LNV +GTAL+DMYAKCG + +A ++F  M  +N  T+  +I G 
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGY 319

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A++G+   A+  FS MI     PDE+TFLG+L ACCH GLV+EGR YF  M   F L P+
Sbjct: 320 AMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPR 379

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY CMVDLLGR+G L+EA+QLI++M M  D ++W  L  ACR+HGN+ +GE A  KLL
Sbjct: 380 IEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLL 439

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           EL+P +   YVLLAN+Y     W++ G+VR+MM+ R V K PGCSSIE++ ++YEF+V +
Sbjct: 440 ELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSN 499

Query: 569 KSHPELEQIYDCLVQLTR 586
              P  E++Y  L  + +
Sbjct: 500 YIKPGFEEVYKLLADMNK 517



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 191/388 (49%), Gaps = 52/388 (13%)

Query: 8   SHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           SHGFA S L+ F       + D C               N  IR + ++ K   +V +Y 
Sbjct: 88  SHGFAASALL-FTQFYGFIDSDLC---------------NSMIRCYTDSNKHLHSVFIYT 131

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           QM +NG   PD+ T+P + K  A L  + LG  I   ++++GF+ ++YV  A+++++ +C
Sbjct: 132 QMWKNG-IFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTC 190

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
             +  A  VFDE   RN+VSWN+LI G+  +   R+ I +FR+MQ+   +P EVTM+G++
Sbjct: 191 SSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVL 250

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            ACA L  LN GR I  YI  + L L V +  AL+DMY KCG ++ AE+IF +M  K V 
Sbjct: 251 LACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVY 310

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           +                               WN +I GY    R + AL  F  M    
Sbjct: 311 T-------------------------------WNVLISGYAMNGRGESALQAFSRMIMEK 339

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAK 365
            KPD VT +  L AC   G +++G      + KE F L   +     +VD+  + G + +
Sbjct: 340 FKPDEVTFLGVLCACCHQGLVNEGRTYFTSM-KEEFGLRPRIEHYGCMVDLLGRAGFLDE 398

Query: 366 ALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           A Q+   M  + + + +  ++G   +HG
Sbjct: 399 AQQLIQAMSMQPDPIIWRELLGACRIHG 426


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 210/647 (32%), Positives = 329/647 (50%), Gaps = 76/647 (11%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
             L SH +  S L+  C    + +  Y   I  +  +P++  ++  ++ +   G   + V
Sbjct: 27  NSLHSHNYWVSLLLINCTRLHA-HPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVV 85

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDM 114
            L+K    +   RP  F Y  L K+    G  F  Y     VLKLG           +DM
Sbjct: 86  SLFK-CTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY-----VLKLGHIDDHFIRNAILDM 139

Query: 115 YVHNAVIHV--------------------------------------------------- 123
           Y  N  + +                                                   
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMV 199

Query: 124 --FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
             +   GDL  A   FDE   R++VSWN++ + + +   P+EA+ LF  M  E + PD+ 
Sbjct: 200 TGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDT 259

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T +  +S+C+ + D  L   I   I +  + L   +  AL+DM+ K G LE A  IFD +
Sbjct: 260 TWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDEL 319

Query: 242 -VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
              +  V+   MI  Y + G L +AR++FD++P++ VV WN++I GY Q   S  ++ LF
Sbjct: 320 GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELF 379

Query: 301 HEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
            EM     I+PD VT    LSAC  +GAL    W+   + ++N  L +    +L+ MY+K
Sbjct: 380 KEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSK 439

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG++A A ++F  M  R+ +++  +I G A +G   +AI     M   G+ PD +T++G+
Sbjct: 440 CGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGV 499

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GL++EG+  F  + +     P + HY+CMVDLLGR+G L+EA+ LI+SMPM  
Sbjct: 500 LTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKP 554

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              V+G+L  A R+H  V +GE AA KL EL+PQ+ G YVLL+N+Y     WE+  +VR+
Sbjct: 555 HAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVRE 614

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           MM++ G++K+ G S +E  G +++F V D+SH + + IY  L +L R
Sbjct: 615 MMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELER 661


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 208/627 (33%), Positives = 322/627 (51%), Gaps = 80/627 (12%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +TG IS+ F  + L+A    S  ++L    K+   +   +  SWN  I  + + GK + A
Sbjct: 155 VTGFISNVFVGNALVAM--YSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVA 212

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           ++++ +M    G RPDN T   +   CASLG   LG ++    +      +M+V N ++ 
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE----- 177
           ++  CG +  A  VF    V+++VSWN+++ G+ + G   +A+RLF  MQ E+++     
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332

Query: 178 ------------------------------PDEVTMIGMVSACAQLEDLNLGREIHWY-- 205
                                         P+EVT+I ++S CA +  L  G+EIH Y  
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 206 -----ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
                + ++G      + N L+DMY KC K+                             
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKV----------------------------- 423

Query: 261 FLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTV 316
             D AR +FD L   E+ VV W  +IGGY Q   + +AL L  EM  +    +P+A T  
Sbjct: 424 --DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
             L AC+ L AL  G  IH +  +   N + + +   L+DMYAKCG+I+ A  VF  M  
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMA 541

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           +N +T+T+++ G  +HG   +A+  F EM  +G   D +T L +L AC H G++D+G +Y
Sbjct: 542 KNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F +M ++F +SP  +HY+C+VDLLGR+G L  A +LI  MPM    VVW A    CR+HG
Sbjct: 602 FNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHG 661

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
            V +GE AA K+ EL     G Y LL+N+Y ++  W++  ++R +M  +GV+K PGCS +
Sbjct: 662 KVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWV 721

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLV 582
           E       F V DK+HP  ++IY  L+
Sbjct: 722 EGIKGTTTFFVGDKTHPHAKEIYQVLL 748



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 244/477 (51%), Gaps = 20/477 (4%)

Query: 36  FNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR 95
           F   +   + WN  IR + + G   + + L+  M     T PDN+T+P +FK C  +   
Sbjct: 85  FPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT-PDNYTFPFVFKACGEISSV 143

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
             G       L  GF  +++V NA++ ++  C  L  A  VFDE  V ++VSWNS+I  +
Sbjct: 144 RCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESY 203

Query: 156 VRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
            + G P+ A+ +F  M  E    PD +T++ ++  CA L   +LG+++H +   S +   
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQN 263

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N L+DMY KCG ++ A  +F +M  K VVS   M+ GY++ G  + A ++F+ + E
Sbjct: 264 MFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQE 323

Query: 275 KY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
           +     VV W+A I GY Q     EAL +  +M ++GIKP+ VT +  LS C+ +GAL  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 331 GIWIHRFIEKENFNL--------NVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLT 380
           G  IH +  K   +L        N+V+   L+DMYAKC  +  A  +F  +   ER+ +T
Sbjct: 384 GKEIHCYAIKYPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVT 442

Query: 381 YTAIIGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +T +IGG + HG A  A+   SEM        P+  T    L AC     +  G++  A 
Sbjct: 443 WTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAY 502

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
                + +  L   +C++D+  + G + +A  +  +M MA + V W +L     +HG
Sbjct: 503 ALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHG 558



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 14/299 (4%)

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS---CTTMI 253
           N   + H YI  S  + + P          KC  +   + I   +++  +++    + +I
Sbjct: 9   NAAAKSHQYIKVSLFSTSAPEITP--PFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLI 66

Query: 254 VGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
             Y   G L  A  +    P  +  V  WN++I  Y     + + L LF  M +    PD
Sbjct: 67  STYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPD 126

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
             T      AC ++ ++  G   H       F  NV +G ALV MY++C +++ A +VF 
Sbjct: 127 NYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFD 186

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVD 430
           EM   + +++ +II   A  GK   A+  FS M    G  PD IT + +L  C   G   
Sbjct: 187 EMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHS 246

Query: 431 EGRKY--FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            G++   FA  S + +    +   +C+VD+  + G+++EA  +  +M +  DVV W A+
Sbjct: 247 LGKQLHCFAVTSEMIQ---NMFVGNCLVDMYAKCGMMDEANTVFSNMSV-KDVVSWNAM 301


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 205/590 (34%), Positives = 315/590 (53%), Gaps = 55/590 (9%)

Query: 6   LISHGF-----APSRLIAFCAISESKNLDYCTKILFNVQNPN--SFSWNVAIRGFLETGK 58
           L+ HG      A S+LI+  A+   + L    +I  +  NP   +F  N  +R +     
Sbjct: 81  LLKHGLHLDPLAASKLISSYALQ--RRLPASRRIFASFPNPQATTFLPNTLLRAYALNAL 138

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
              AV L+  M +      D+FTY  L K  +S GL  L   +  HV+KLG   D YV N
Sbjct: 139 PHAAVSLFSAMPQR-----DSFTYSFLIKALSSSGLTPL-RAVHSHVVKLGSIEDTYVGN 192

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           A+I  +   G    A  VF+E   R+ VSWNS +   VR G    A R+F +M      P
Sbjct: 193 ALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM------P 246

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D+ T                   + W              N ++D Y K GK+E A E+F
Sbjct: 247 DKDT-------------------VSW--------------NTVLDGYTKAGKMEDAFELF 273

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M  + VVS +T++ GY K G +++AR IFD +P K +V W  ++    Q    +EA  
Sbjct: 274 QCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGR 333

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF +M+   ++ D    V  L+AC++ G+L  G  IHR++       +  +  A++DM+ 
Sbjct: 334 LFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFC 393

Query: 359 KCGNIAKALQVFH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           KCG + +A  VF  E+ E++S+++  IIGG A+HG    A+ +F++M   G  PD +T +
Sbjct: 394 KCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMI 453

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +LSAC H G V+EGR++F+ M   + + P+++HY CM+DLLGR GL+EEA  LI+SMP 
Sbjct: 454 NVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPW 513

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             + V+WG+L  ACRLH NV   E A  +L +L P ++G Y +L+N+Y ++  W +  K 
Sbjct: 514 DPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKA 573

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           R  M+  G +K+ G S IE++   +EF V D+ H + +QI + + +L+ H
Sbjct: 574 RMQMKGTGSQKSAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRLSSH 623


>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
 gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 303/517 (58%), Gaps = 5/517 (0%)

Query: 45  SWNVAIRGFLETGKMR-EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           +WN  IR +  +     +A+ +Y   ++   TRPDN+TYP L K C+ L     G ++  
Sbjct: 41  TWNCLIRAYSRSPTAPIKAILVYNFFIKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHT 100

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           HV+K G D D+YV NA++H + S G+   AC +FD    R++ SWNSL+  +  +    E
Sbjct: 101 HVIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTE 160

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDLNLGREIHWYISESGLTLTVPLANAL 221
            + LF+ +    V+ D+++++ ++SACAQ  +E L  GR +H Y+ + G    + + NAL
Sbjct: 161 VMVLFKKLMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVHGYVIKVGFGCFLNVDNAL 220

Query: 222 MDMYVKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           ++ Y+KC +++ A ++FD  V++  VVS T +I  Y + G +D+AR +FD++ +K  V W
Sbjct: 221 LNFYIKCKEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLW 280

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N ++  YV+A+   EAL LF +M + G+ PD  T V  L AC+ +  L     +HRFI +
Sbjct: 281 NLMVHAYVKARCPNEALDLFEKMDSAGVIPDENTMVSVLLACASISDLQCARLLHRFINR 340

Query: 341 -ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
             N   +V L TAL+ MY+KCG++ +AL  F++M   +  T+TA+I GLA +G   +A+S
Sbjct: 341 NSNVRQDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALS 400

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            F+ M   G+ P+E T + +L+AC H GLV EG + F  M S +++  K++H+ C++DLL
Sbjct: 401 MFNRMENQGIRPNESTLVSVLTACIHSGLVKEGCQLFKSMVSDYKMQLKMEHFGCLIDLL 460

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
            R+GLL +AE+ I+ +     ++ +  L  AC  +     G++ A ++ +L        +
Sbjct: 461 SRAGLLHQAEEFIQLLLPEERLIAYKTLLSACMKYSEFDFGKKVANEMSKLSSNSHETRI 520

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           LL+N Y  +  W +  + RK ++E    K PG S ++
Sbjct: 521 LLSNFYALAGQWAQVAETRKFIKEFDTRKAPGMSFVD 557



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 148/326 (45%), Gaps = 16/326 (4%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL 65
            +  G   S  I   A  E   +D    +   + + +   WN+ +  +++     EA+DL
Sbjct: 240 FVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDL 299

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV--DMYVHNAVIHV 123
           +++M  + G  PD  T   +   CAS+        +    +    +V  D+++  A+I +
Sbjct: 300 FEKM-DSAGVIPDENTMVSVLLACASIS-DLQCARLLHRFINRNSNVRQDVFLKTALITM 357

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG +  A   F +    ++ +W ++I G   +G+  EA+ +F  M+ + + P+E T+
Sbjct: 358 YSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTL 417

Query: 184 IGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           + +++AC     +  G ++    +S+  + L +     L+D+  + G L  AEE    ++
Sbjct: 418 VSVLTACIHSGLVKEGCQLFKSMVSDYKMQLKMEHFGCLIDLLSRAGLLHQAEEFIQLLL 477

Query: 243 -NKTVVSCTTMIVGYAKFGFLDIARKIFDDLP-------EKYVVPWN--AIIGGYVQAKR 292
             + +++  T++    K+   D  +K+ +++        E  ++  N  A+ G + Q   
Sbjct: 478 PEERLIAYKTLLSACMKYSEFDFGKKVANEMSKLSSNSHETRILLSNFYALAGQWAQVAE 537

Query: 293 SKEALALFHEMQATGIK-PDAVTTVH 317
           +++ +  F   +A G+   D+V   H
Sbjct: 538 TRKFIKEFDTRKAPGMSFVDSVEAGH 563


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 318/569 (55%), Gaps = 13/569 (2%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDY--CTKILFNVQNPNSFSWNVAIRGFLETGKM 59
            +T  I   FA SR       +     +Y  C+    +V++P  F WN+ I+        
Sbjct: 46  NLTTKIVVAFADSRRPYLAEFARYVFREYHVCSFAPGDVKDP--FLWNLVIKSHSHGVDP 103

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           R A+  +  ML NG    D F++ L+ K C+ LG    G +I G + K G   D+++ N 
Sbjct: 104 RRALLWFCLMLENG-ISVDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNC 162

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +I +++ CG LG A  +FD    R+ VS+NS+I+G+++ G    A  LF  M  E    +
Sbjct: 163 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREM--KN 220

Query: 180 EVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
            ++   M+S  AQ  D +N+  ++   + E  L       N+L+  YVK G++E A+++F
Sbjct: 221 LISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW----NSLIYGYVKHGRMEDAKDLF 276

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M  + VV+  TMI GYAK GF+  A+ +FD +P + VV +N+++ GYVQ +   EAL 
Sbjct: 277 HVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALE 336

Query: 299 LFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
           +F +M+  + + PD  T V  LSA +QLG L   + +H +I ++ F L   LG AL+DMY
Sbjct: 337 IFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMY 396

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +KCG+I +A+ VF  +  ++   + A+IGGLA+HG    A +   E+    + PD ITF+
Sbjct: 397 SKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFV 456

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
           G+L+AC H GLV EG   F  M    ++ P+L+HY CMVDLL R G +E A+ LI  MP+
Sbjct: 457 GVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPI 516

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             + V+W     AC  H    IGE  A  L+     +   YVLL+NMY     W++   V
Sbjct: 517 EPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASFGRWKDVRNV 576

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           R MM+ER ++K PGCS IE++G ++EF V
Sbjct: 577 RTMMKERKLQKVPGCSWIELDGRVHEFFV 605


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 307/596 (51%), Gaps = 62/596 (10%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+S +L    +I   + N +  SWN  I G++  G + EAV  Y  M+++G    +  
Sbjct: 80  AYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRI 139

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+  +  + +S G   LG +I G ++K GF   ++V ++++ ++   G + +A  VFDE 
Sbjct: 140 TFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEV 199

Query: 141 CVRNLV-------------------------------SWNSLINGFVRSGFPREAIRLFR 169
             RN+V                               SW ++I G +++G   EA+ LFR
Sbjct: 200 QERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFR 259

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           DM+ E +  D+ T   +++AC  L  L  G+EIH  I  SG    V + +AL+DMY KC 
Sbjct: 260 DMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCR 319

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +  AE +F  M NK V                               V W A++ GY Q
Sbjct: 320 SVRYAEAVFKRMANKNV-------------------------------VSWTAMLVGYGQ 348

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
              S+EA+ +F +MQ  GI+PD  T    +S+C+ L +L++G   H           + +
Sbjct: 349 NGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITV 408

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             AL+ +Y KCG+I  + Q+F EM  R+ +++TA++ G A  GKA + I  F  M+  GL
Sbjct: 409 SNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGL 468

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD +TF+ +LSAC   GLV+ G++YF  M     + P   HY+CM+DL GR+G LEEA+
Sbjct: 469 KPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAK 528

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
             I  MP + D + W  L  +CRL+GN  IG+ AA  LLELDPQ+   Y+LL+++Y    
Sbjct: 529 NFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKG 588

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            W    ++R+ M E+G  K PG S I+    +Y F   D+S P  +QIY  L +L 
Sbjct: 589 KWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLN 644



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 213/414 (51%), Gaps = 7/414 (1%)

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
           T P+ F Y  L    + LG       +F  + +     + +  N ++  +   GDL    
Sbjct: 36  TNPETFLYNNLINAYSKLGNITYARHVFDKMPQ----PNSFSWNTMLSAYSKSGDLSTMQ 91

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV-EPDEVTMIGMVSACAQL 193
            +F     R+ VSWNSLI+G+V  G   EA++ +  M  + V   + +T   M+   +  
Sbjct: 92  EIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQ 151

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             ++LGR+IH  I + G    V + ++L+DMY K G +  A ++FD +  + VV   TMI
Sbjct: 152 GCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMI 211

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            G  + G +  ++++F  + E+  + W  +I G +Q     EA+ LF +M+  G+  D  
Sbjct: 212 TGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQY 271

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L+AC  L AL +G  IH  I +  +N NV +G+ALVDMY KC ++  A  VF  M
Sbjct: 272 TFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRM 331

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             +N +++TA++ G   +G + +A+  F +M   G+ PD+ T   ++S+C +   ++EG 
Sbjct: 332 ANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGA 391

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           ++  Q + +  L   +   + ++ L G+ G +E++ QL   M    D V W AL
Sbjct: 392 QFHCQ-ALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF-RDEVSWTAL 443



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 201/397 (50%), Gaps = 60/397 (15%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ITGL+  G           + +SK      ++   ++  +S SW   I G ++ G   EA
Sbjct: 211 ITGLLRSGM----------VKDSK------RLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL--GYEIFGHVLKLGFDVDMYVHNAV 120
           +DL++ M R  G   D +T+  +   C   GLR L  G EI   +++ G++ +++V +A+
Sbjct: 255 MDLFRDM-RQEGMAMDQYTFGSVLTACG--GLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++  C  +  A  VF     +N+VSW +++ G+ ++GF  EA+R+F DMQ   +EPD+
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T+  ++S+CA L  L  G + H     SGL   + ++NAL+ +Y KCG +E + ++FD 
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  +  VS T ++ GYA+FG                               ++ E + LF
Sbjct: 432 MSFRDEVSWTALVSGYAQFG-------------------------------KANETIDLF 460

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN----FNLNVVLGTALVDM 356
             M   G+KPDAVT +  LSACS+ G ++ G      + K++    F+ +    T ++D+
Sbjct: 461 ERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHY---TCMIDL 517

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           + + G + +A    ++MP   +S+ +  ++    L+G
Sbjct: 518 FGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYG 554



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 153/335 (45%), Gaps = 42/335 (12%)

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C +  +    +++H  I +S       L N L++ Y K G +  A  +FD M      S 
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI- 308
            TM+  Y+K G L   ++IF  +P +  V WN++I GYV      EA+  ++ M   G+ 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
             + +T    L   S  G +D G  IH  I K  F   V +G++LVDMYAK G ++ A Q
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 369 V-------------------------------FHEMPERNSLTYTAIIGGLALHGKALDA 397
           V                               FH M ER+S+++T +I GL  +G   +A
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGL--VDEGRKYFAQMSSIFRLSPKLKHY--S 453
           +  F +M   G+  D+ TF  +L+AC  GGL  + EG++     + I R       +  S
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTAC--GGLRALKEGKEIH---TLIIRSGYNHNVFVGS 309

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            +VD+  +   +  AE + + M    +VV W A+ 
Sbjct: 310 ALVDMYCKCRSVRYAEAVFKRMA-NKNVVSWTAML 343


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 180/444 (40%), Positives = 271/444 (61%), Gaps = 26/444 (5%)

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
            WN +I  + +   PR A+ ++  ++    E D      ++ AC Q+    LG+EIH ++
Sbjct: 126 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 185

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS----CTTMIVGYAKFGFL 262
            + GL   V + NALM MY +C  +E A  +FD M+ + VVS     T ++  YAK G L
Sbjct: 186 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHL 245

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            +AR++F+ L +K VV W A+I G +++ R +E   LF  MQ   I P+ +T        
Sbjct: 246 GLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT-------- 297

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
                          + KE   ++ +L TALVDMYAKCG+I  A ++F E   R+   + 
Sbjct: 298 --------------MLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWN 343

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           AII G A+HG   +A+  F+EM   G+ P++ITF+G+L AC H GLV EG+K F +M   
Sbjct: 344 AIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 403

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F L P+++HY CMVDLLGR+GLL+EA ++I+SMP+  + +VWGAL  ACRLH N  +GE 
Sbjct: 404 FGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGEL 463

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA +LLE++P++ G  VL++N+Y  +N W +A  VRK M+  G++K PG S IEVNG ++
Sbjct: 464 AATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVH 523

Query: 563 EFIVRDKSHPELEQIYDCLVQLTR 586
           EF++ D+SHP++ +I + L ++ R
Sbjct: 524 EFLMGDQSHPQIRRINEMLAEMRR 547



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 163/389 (41%), Gaps = 97/389 (24%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           S  WN  I  + +  + R A+++Y Q LR      DNF  P + K C  +    LG EI 
Sbjct: 124 SAQWNFVITSYTKRNQPRNALNVYAQ-LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIH 182

Query: 103 GHVLKLGFDVDMYVHN-----------------------------------AVIHVFVSC 127
           G VLK G D D++V N                                   A++ ++  C
Sbjct: 183 GFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKC 242

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G LGLA  +F+    + +VSW ++I G +RS    E  +LF  MQ E + P+E+TM    
Sbjct: 243 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM---- 298

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
                             +++  + +   L  AL+DMY KCG + +A  +F   +++ + 
Sbjct: 299 ------------------LNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC 340

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
               +I G+A  G+                                +EAL +F EM+  G
Sbjct: 341 MWNAIITGFAMHGY-------------------------------GEEALDIFAEMERQG 369

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNI 363
           +KP+ +T +  L ACS  G + +G    +  EK      +V        +VD+  + G +
Sbjct: 370 VKPNDITFIGLLHACSHAGLVTEG---KKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLL 426

Query: 364 AKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            +A ++   MP + N++ + A++    LH
Sbjct: 427 DEAHEMIKSMPIKPNTIVWGALVAACRLH 455


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 278/462 (60%), Gaps = 4/462 (0%)

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           + S G L  +  +F  +   ++  W ++I+G    G   +A+  +  M  + VEP+  T 
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++  C     +  G+ +H    + G    + +   L+D+Y + G + SA+++FD+M  
Sbjct: 79  SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           K++VS T M+  YAK G LD AR +FD + E+  V WN +I GY Q     EAL LF  M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
                KP+ VT +  LSAC QLGAL+ G W+H +IE      NV +GTALVDMY+KCG++
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 254

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             A  VF ++ +++ + + ++I G A+ G + +A+  F  M  +GL P  ITF+GILSAC
Sbjct: 255 EDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 314

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H G V EG   F +M   + + PK++HY CMV+LLGR+G +E+A +L+++M +  D V+
Sbjct: 315 GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVL 374

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WG L  ACRLHG +++GE+    L++ +  +SG Y+LL+N+Y     W+   ++R MM++
Sbjct: 375 WGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKD 434

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            GV+K PGCSSIEVN  ++EF+    +HP+ ++IY  L ++ 
Sbjct: 435 SGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEIN 476



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 186/399 (46%), Gaps = 69/399 (17%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LDY   +    QNP+ F W   I G    G   +A++ Y QML  G   P+ FT+  + K
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG-VEPNAFTFSSILK 83

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           +C        G  +    +KLGFD D+YV   ++ V+   GD+  A  +FD    ++LVS
Sbjct: 84  LCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVS 139

Query: 148 -------------------------------WNSLINGFVRSGFPREAIRLFRDMQLERV 176
                                          WN +I+G+ ++G P EA+ LFR M   + 
Sbjct: 140 LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA 199

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           +P+EVT++ ++SAC QL  L  GR +H YI  +G+   V +  AL+DMY KCG LE A  
Sbjct: 200 KPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARL 259

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD + +K VV+  +MIVGYA  GF                               S+EA
Sbjct: 260 VFDKIDDKDVVAWNSMIVGYAMXGF-------------------------------SQEA 288

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVD 355
           L LF  M   G+ P  +T +  LSAC   G + +G  I   ++ E      +     +V+
Sbjct: 289 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 348

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
           +  + G++ +A ++   M  E + + +  ++G   LHGK
Sbjct: 349 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 387



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 127/315 (40%), Gaps = 75/315 (23%)

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           VPL + L   Y   G+L+ +  +F    N +V   T +I G+A  G              
Sbjct: 10  VPL-DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL------------- 55

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
                              ++AL  + +M   G++P+A T    L  C     ++ G  +
Sbjct: 56  ------------------HEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKAL 93

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK- 393
           H    K  F+ ++ + T L+D+YA+ G++  A Q+F  MPE++ ++ TA++   A HG+ 
Sbjct: 94  HSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGEL 153

Query: 394 ------------------------------ALDAISYFSEMIGVGLMPDEITFLGILSAC 423
                                           +A+  F  M+     P+E+T L +LSAC
Sbjct: 154 DAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 213

Query: 424 CHGGLVDEGR---KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
              G ++ GR    Y       F +       + +VD+  + G LE+A +L+       D
Sbjct: 214 GQLGALESGRWVHSYIENNGIQFNVHVG----TALVDMYSKCGSLEDA-RLVFDKIDDKD 268

Query: 481 VVVWGALFFACRLHG 495
           VV W ++     + G
Sbjct: 269 VVAWNSMIVGYAMXG 283



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 34/180 (18%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +L+    +   + + +  +WN  I G+   G  +EA+ L+K M R  G  P N T+
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRM-GLHPTNITF 307

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C   G    G++IF  +       D Y               G+   +    C+
Sbjct: 308 IGILSACGHSGWVTEGWDIFNKM------KDEY---------------GIEPKIEHYGCM 346

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            NL+          R+G   +A  L ++M    +EPD V    ++ AC     + LG +I
Sbjct: 347 VNLLG---------RAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEKI 394


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/588 (34%), Positives = 313/588 (53%), Gaps = 65/588 (11%)

Query: 27  NLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           NL + +  LFN +  P + +W   IR +   G   +++  +  ML +G   PD+  +P +
Sbjct: 54  NLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSV 112

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS------CGDLGL-ACNVFD 138
            K CA L    LG  + G+++++G D D+Y  NA+++++         G   L A  VFD
Sbjct: 113 LKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFD 172

Query: 139 ESCVR-------------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
           E   R                         +LVSWN++I G  R+G   E +R+ R+M  
Sbjct: 173 EMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGG 232

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
             ++PD  T+  ++   A+  D++ G+EIH      GL   + +A++L+DMY KC ++  
Sbjct: 233 ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
                         SC                 ++F  L E+  + WN+II G VQ    
Sbjct: 293 --------------SC-----------------RVFTLLTERDGISWNSIIAGCVQNGLF 321

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            E L  F +M    IKP + +    + AC+ L  L  G  +H +I +  F+ N+ + ++L
Sbjct: 322 DEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSL 381

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           VDMYAKCGNI  A Q+F  M  R+ +++TA+I G ALHG+A DAI  F +M   G+ P+ 
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNH 441

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           + F+ +L+AC HGGLVDE  KYF  M+  F ++P ++HY+ + DLLGR+G LEEA   I 
Sbjct: 442 VAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFIC 501

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
            M +     +W  L  ACR+H N+ + E+ A ++LE+DP ++G Y+LLAN+Y  +  W+E
Sbjct: 502 GMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKE 561

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           A K R  M   G+ KTP CS IEV   +Y F+  D+SHP  E+I + +
Sbjct: 562 AAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAM 609



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 162/343 (47%), Gaps = 21/343 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +  SWN  I G ++ G   E +  ++QML     +P ++++  +   CA L    LG ++
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLM-AKIKPKSYSFSSIMPACAHLTTLHLGKQL 362

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G++ + GFD ++++ ++++ ++  CG++  A  +FD   +R++VSW ++I G    G  
Sbjct: 363 HGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDLNLGREIHWYISESGLTLTVPLAN 219
            +AI LF  M+ E ++P+ V  + +++AC+   L D    +  +    + G+   V    
Sbjct: 423 PDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVD-EAWKYFNSMTRDFGIAPGVEHYA 481

Query: 220 ALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           A+ D+  + G+LE A +    M +  T     T++        +D+A K+ + + E  V 
Sbjct: 482 AVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILE--VD 539

Query: 279 PWNA-----IIGGYVQAKRSKEALALFHEMQATGI-KPDAVTTVHCLSACSQLGALDDGI 332
           P N      +   Y  A+R KEA      M+  GI K  A + +   +      A D+  
Sbjct: 540 PNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDES- 598

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
             H   EK    + V     LV++  K G +    +V H++ E
Sbjct: 599 --HPCYEKIREAMEV-----LVELMEKEGYVPDTSEVHHDVEE 634



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 117/286 (40%), Gaps = 36/286 (12%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+    L  + ++F+ +     + W ++I  Y       ++L  F  M A+G+ PD    
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK-------------CGN 362
              L +C+ L  L+ G  +H +I +   + ++  G AL++MY+K              G 
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 363 IAKAL-------------------QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           +   +                   ++F  MPE++ +++  II G A +G   + +    E
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLKHYSCMVDLLGRS 462
           M G  L PD  T   +L        +  G++      SI + L   +   S ++D+  + 
Sbjct: 230 MGGANLKPDSFTLSSVLPLIAENVDISRGKEIHG--CSIRQGLDADIYVASSLIDMYAKC 287

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
             + ++ ++  ++    D + W ++   C  +G    G R   ++L
Sbjct: 288 TRVADSCRVF-TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQML 332


>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
 gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
           DEFECTIVE 247; Flags: Precursor
 gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC007109.6, and contains two DUF17 PF|01535
           domains [Arabidopsis thaliana]
 gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
          Length = 500

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 274/448 (61%), Gaps = 4/448 (0%)

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           ++S     VSW S IN   R+G   EA + F DM L  VEP+ +T I ++S C      +
Sbjct: 29  NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGS 88

Query: 198 --LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
             LG  +H Y  + GL    V +  A++ MY K G+ + A  +FD M +K  V+  TMI 
Sbjct: 89  EALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           GY + G +D A K+FD +PE+ ++ W A+I G+V+    +EAL  F EMQ +G+KPD V 
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVA 208

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +  L+AC+ LGAL  G+W+HR++  ++F  NV +  +L+D+Y +CG +  A QVF+ M 
Sbjct: 209 IIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNME 268

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +R  +++ ++I G A +G A +++ YF +M   G  PD +TF G L+AC H GLV+EG +
Sbjct: 269 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLR 328

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M   +R+SP+++HY C+VDL  R+G LE+A +L++SMPM  + VV G+L  AC  H
Sbjct: 329 YFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNH 388

Query: 495 G-NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           G N+ + ER    L +L+ +    YV+L+NMY     WE A K+R+ M+  G++K PG S
Sbjct: 389 GNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFS 448

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SIE++  ++ F+  D +H E   I + L
Sbjct: 449 SIEIDDCMHVFMAGDNAHVETTYIREVL 476



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 180/389 (46%), Gaps = 68/389 (17%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL--GLRFLGYE 100
           + SW   I      G++ EA   +  M    G  P++ T+  L   C     G   LG  
Sbjct: 36  TVSWTSRINLLTRNGRLAEAAKEFSDMTL-AGVEPNHITFIALLSGCGDFTSGSEALGDL 94

Query: 101 IFGHVLKLGFD----------VDMYVH----------------------NAVIHVFVSCG 128
           + G+  KLG D          + MY                        N +I  ++  G
Sbjct: 95  LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSG 154

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
            +  A  +FD+   R+L+SW ++INGFV+ G+  EA+  FR+MQ+  V+PD V +I  ++
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALN 214

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           AC  L  L+ G  +H Y+        V ++N+L+D+Y +CG +E A ++F +M  +TVVS
Sbjct: 215 ACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVS 274

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
             ++IVG+A  G                                + E+L  F +MQ  G 
Sbjct: 275 WNSVIVGFAANG-------------------------------NAHESLVYFRKMQEKGF 303

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKAL 367
           KPDAVT    L+ACS +G +++G+   + ++ +   +  +     LVD+Y++ G +  AL
Sbjct: 304 KPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDAL 363

Query: 368 QVFHEMPER-NSLTYTAIIGGLALHGKAL 395
           ++   MP + N +   +++   + HG  +
Sbjct: 364 KLVQSMPMKPNEVVIGSLLAACSNHGNNI 392



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 2/219 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
            S  +D   K+   +   +  SW   I GF++ G   EA+  +++M +  G +PD     
Sbjct: 152 RSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREM-QISGVKPDYVAII 210

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                C +LG    G  +  +VL   F  ++ V N++I ++  CG +  A  VF     R
Sbjct: 211 AALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKR 270

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REI 202
            +VSWNS+I GF  +G   E++  FR MQ +  +PD VT  G ++AC+ +  +  G R  
Sbjct: 271 TVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYF 330

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                +  ++  +     L+D+Y + G+LE A ++  SM
Sbjct: 331 QIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 62/228 (27%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +++  ++ +N++     SWN  I GF   G   E++  +++M +  G +PD  T+     
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM-QEKGFKPDAVTFTGALT 315

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+ +GL   G   F  ++K  + +   + +                             
Sbjct: 316 ACSHVGLVEEGLRYF-QIMKCDYRISPRIEH----------------------------- 345

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA--------------QL 193
           +  L++ + R+G   +A++L + M +   +P+EV +  +++AC+               L
Sbjct: 346 YGCLVDLYSRAGRLEDALKLVQSMPM---KPNEVVIGSLLAACSNHGNNIVLAERLMKHL 402

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            DLN+    ++ I              L +MY   GK E A ++   M
Sbjct: 403 TDLNVKSHSNYVI--------------LSNMYAADGKWEGASKMRRKM 436


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/625 (33%), Positives = 325/625 (52%), Gaps = 56/625 (8%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQN---PNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +R     A S S N+    + LFN       ++ S+N  I  +        A++L+ QM 
Sbjct: 73  ARTTLLSAYSSSGNVKLAQQ-LFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMK 131

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG-HVLKLGFDVDMYVHNAVIHVFVSCGD 129
           R G   PD FT+  +    + +       ++    V+KLG  +   V NA++  +V C  
Sbjct: 132 RYGFL-PDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCAS 190

Query: 130 LGL---------ACNVFDES----------------CVRNL-----------------VS 147
             L         A  VFDE+                 VRN                  V+
Sbjct: 191 SPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVA 250

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED----LNLGREIH 203
           WN++I+G+VR G   EA   FR M    ++ DE T   ++SAC    +     N GR++H
Sbjct: 251 WNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVH 310

Query: 204 WYI----SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            YI     E      + + NAL+  Y K  ++  A  +FD M  + ++S   ++ GY   
Sbjct: 311 GYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNA 370

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
             ++ A  IF ++PE+ V+ W  +I G  Q    +E L LF++M++ G++P        +
Sbjct: 371 QRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAI 430

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           +ACS LG+LD+G  IH  + +   +  +  G AL+ MY++CG +  A  VF  MP  +S+
Sbjct: 431 TACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSV 490

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           ++ A+I  LA HG  + AI  F +M+   ++PD ITFL IL+AC H GL+ EGR YF  M
Sbjct: 491 SWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTM 550

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
            + + ++P   HY+ ++DLL R+G+  +A+ +I+SMP  A   +W AL   CR+HGN+ +
Sbjct: 551 CTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMEL 610

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
           G +AA +LLEL P   G Y++L+NMY     W+E  +VR +M ERGV+K PGCS +EV  
Sbjct: 611 GIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVEN 670

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQL 584
           +++ F+V D  HPE++ +Y  L QL
Sbjct: 671 MVHVFLVDDARHPEVQAVYTYLQQL 695



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 215/481 (44%), Gaps = 65/481 (13%)

Query: 72  NGGTRPDNFTYPLLFKV-CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
             G +P+ F    L  + C S  + +   ++F  + K     D+     ++  + S G++
Sbjct: 33  TSGFKPNTFILNRLINIYCKSSNITY-ARKLFDKIPK----PDIVARTTLLSAYSSSGNV 87

Query: 131 GLACNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
            LA  +F+ +   +R+ VS+N++I  +        A+ LF  M+     PD  T   ++S
Sbjct: 88  KLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLS 147

Query: 189 ACAQLEDLNLG-REIHWYISESGLTLTVPLANALMDMYVKCGK---------LESAEEIF 238
           A + + D     + +H  + + G  L   + NAL+  YV C           + SA ++F
Sbjct: 148 ALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVF 207

Query: 239 DSMVNKTVV--SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           D      +   S TTMI GY +   L  AR++ D L     V WNA+I GYV+    +EA
Sbjct: 208 DETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEA 267

Query: 297 LALFHEMQATGIKPDAVTTVHCLSAC----SQLGALDDGIWIHRFIEK------ENFNLN 346
              F  M + GI+ D  T    +SAC     ++G  + G  +H +I +       +F L+
Sbjct: 268 FDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLS 327

Query: 347 V-----------------------------VLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           V                             +   A++  Y     I +A  +F EMPERN
Sbjct: 328 VNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERN 387

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            LT+T +I GLA +G   + +  F++M   GL P +  F G ++AC   G +D G++  +
Sbjct: 388 VLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHS 447

Query: 438 QMSSIFRL--SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           Q   + RL     L   + ++ +  R G++E AE +  +MP   D V W A+  A   HG
Sbjct: 448 Q---VIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALAQHG 503

Query: 496 N 496
           +
Sbjct: 504 H 504



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 167/405 (41%), Gaps = 62/405 (15%)

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
           + R +H +I  SG      + N L+++Y K   +  A ++FD +    +V+ TT++  Y+
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 258 KFGFLDIARKIFDDLPE--KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
             G + +A+++F+  P   +  V +NA+I  Y        AL LF +M+  G  PD  T 
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 316 VHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGN---------IAK 365
              LSA S +   +     +H  + K    L   +  AL+  Y  C +         +A 
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 366 ALQVFHEMPE----------------RNS-----------LTY------TAIIGGLALHG 392
           A +VF E P+                RN            LTY       A+I G    G
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSAC--CHG--GLVDEGRKYFAQMSSIFRLSPK 448
              +A   F  M  +G+  DE T+  ++SAC  C+   G+ + GR+       I R   +
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGY---ILRTVVE 319

Query: 449 LKHY------SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             H+      + ++    +   + EA ++   MP+  D++ W A+      + N    E 
Sbjct: 320 PSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPV-RDIISWNAVLSG---YVNAQRIEE 375

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           A     E+  ++   + ++ +    +   EE  K+   M+  G+E
Sbjct: 376 ANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/587 (34%), Positives = 320/587 (54%), Gaps = 14/587 (2%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVD 64
           LI   F  SRLI F AI+  +NLD    +  N   NPN F +N  I     +    E   
Sbjct: 62  LICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAV--SSSKNECFG 119

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHV 123
           LY  M+R+    PD  T+  L K  + L       +I  H++  G   +  Y+ N+++  
Sbjct: 120 LYSSMIRHR-VSPDRQTFLYLMKASSFLSEV---KQIHCHIIVSGCLSLGNYLWNSLVKF 175

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           ++  G+ G+A  VF      ++ S+N +I G+ + GF  EA++L+  M  + +EPDE T+
Sbjct: 176 YMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTV 235

Query: 184 IGMVSACAQLEDLNLGREIHWYISESG--LTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           + ++  C  L D+ LG+ +H +I   G   +  + L+NAL+DMY KC +   A+  FD+M
Sbjct: 236 LSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAM 295

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL-ALF 300
             K + S  TM+VG+ + G ++ A+ +FD +P++ +V WN+++ GY +    +  +  LF
Sbjct: 296 KKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELF 355

Query: 301 HEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           +EM     +KPD VT V  +S  +  G L  G W+H  + +     +  L +AL+DMY K
Sbjct: 356 YEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCK 415

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG I +A  VF    E++   +T++I GLA HG    A+  F  M   G+ P+ +T L +
Sbjct: 416 CGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAV 475

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI-RSMPMA 478
           L+AC H GLV+EG   F  M   F   P+ +HY  +VDLL R+G +EEA+ ++ + MPM 
Sbjct: 476 LTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMR 535

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
               +WG++  ACR   ++   E A  +LL+L+P+  G YVLL+N+Y     W  + K R
Sbjct: 536 PSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTR 595

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDK-SHPELEQIYDCLVQL 584
           + ME RGV+KT G SS+     L+ F+  +K +HP   +I   L  L
Sbjct: 596 EAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHL 642


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/493 (36%), Positives = 288/493 (58%), Gaps = 5/493 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H++K       ++   ++ V    G+   A  +F      N   +N++I  +  + 
Sbjct: 32  KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNK 91

Query: 160 FPREAIRLFRDM-----QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
               AI +++ M         + PD+ T   +V +CA L   +LG+++H ++ + G    
Sbjct: 92  VYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN 151

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + N+L++MYVKC  L+ A  +F+ M  +  VS  T+I G+ + G +  AR IF+++ +
Sbjct: 152 TVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQD 211

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +  W AI+ GY +     +AL  F  MQ  GI+PD ++ V  L  C+QLGAL+ G WI
Sbjct: 212 KTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWI 271

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H + +K  F  N+ +  AL++MYAKCG+I +  ++F +M ER+ ++++ +I GLA HG+A
Sbjct: 272 HIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRA 331

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +AI  F EM    + P  ITF+G+L+AC H GL++EG +YF  M   + + P ++HY C
Sbjct: 332 REAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGC 391

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           +V+LLG SG L++A +L++ MP   D  +WG+L  +CR HGN+ I   A   LLEL+P D
Sbjct: 392 LVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPAD 451

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
           +G YVLL+N+Y D   W+   ++RK+M  + ++KTPGCSSIEV+ ++ EF   D S P  
Sbjct: 452 TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFS 511

Query: 575 EQIYDCLVQLTRH 587
           + I   L  L  H
Sbjct: 512 KAICRVLKLLVMH 524



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 205/428 (47%), Gaps = 76/428 (17%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
            L    F  ++++  C  +     +Y   +   V +PN+F +N  IR +        A+ 
Sbjct: 41  SLSQSSFLVTKMVDVC--NHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAIT 98

Query: 65  LYKQMLRNGGTR----PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +YKQML N        PD FT+P + K CA L    LG ++ GHV K G   +  V N++
Sbjct: 99  VYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSL 158

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR----------------------- 157
           + ++V C  L  A  VF+E   R+ VSWN+LI+G VR                       
Sbjct: 159 VEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWT 218

Query: 158 ---SGFPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
              SG+ R     +A+  FR MQ+  +EPDE++++ ++  CAQL  L LG+ IH Y  ++
Sbjct: 219 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA 278

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G    + + NAL++MY KCG ++    +FD M  + V+S +TMIVG A  G         
Sbjct: 279 GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHG--------- 329

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                 R++EA+ LF EMQ   I+P  +T V  L+AC+  G L+
Sbjct: 330 ----------------------RAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLN 367

Query: 330 DGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAI 384
           +G+   R+ E    + N+  G      LV++    G + +AL++  +MP + +S  + ++
Sbjct: 368 EGL---RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSL 424

Query: 385 IGGLALHG 392
           +     HG
Sbjct: 425 LSSCRSHG 432


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/476 (37%), Positives = 295/476 (61%), Gaps = 10/476 (2%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
           +++ +H A    + S G +  +  +F ++   +L  + + IN    +G   +A  L+  +
Sbjct: 66  LNLKLHRA----YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQL 121

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
               + P+E T   ++ +C+       G+ IH ++ + GL +   +A  L+D+Y K G +
Sbjct: 122 LSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDV 177

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
            SA+++FD M  +++VS T MI  YAK G ++ AR +FD + E+ +V WN +I GY Q  
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHG 237

Query: 292 RSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
              +AL LF ++ A G  KPD +T V  LSACSQ+GAL+ G WIH F++     LNV + 
Sbjct: 238 FPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVC 297

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-GL 409
           T L+DMY+KCG++ +A+ VF++ P ++ + + A+I G A+HG + DA+  F+EM G+ GL
Sbjct: 298 TGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGL 357

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            P +ITF+G L AC H GLV+EG + F  M   + + PK++HY C+V LLGR+G L+ A 
Sbjct: 358 QPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAY 417

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
           + I++M M AD V+W ++  +C+LHG+  +G+  A  L+ L+ ++SGIYVLL+N+Y    
Sbjct: 418 ETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVG 477

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            +E   KVR +M+E+G+ K PG S+IE+   ++EF   D+ H + ++IY  L +++
Sbjct: 478 DYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKIS 533



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 183/388 (47%), Gaps = 71/388 (18%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           +P+ F +  AI      G   +A  LY Q+L +    P+ FT+  L K C++      G 
Sbjct: 92  DPDLFLFTAAINTASINGLKDQAFLLYVQLL-SSEINPNEFTFSSLLKSCSTKS----GK 146

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-------------------- 139
            I  HVLK G  +D YV   ++ V+   GD+  A  VFD                     
Sbjct: 147 LIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG 206

Query: 140 -----------SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMV 187
                       C R++VSWN +I+G+ + GFP +A+ LF+ +  E + +PDE+T++  +
Sbjct: 207 NVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAAL 266

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SAC+Q+  L  GR IH ++  S + L V +   L+DMY KCG LE A  +F+    K +V
Sbjct: 267 SACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIV 326

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA-T 306
           +   MI GYA  G+                               S++AL LF+EMQ  T
Sbjct: 327 AWNAMIAGYAMHGY-------------------------------SQDALRLFNEMQGIT 355

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAK 365
           G++P  +T +  L AC+  G +++GI I   + +E      +     LV +  + G + +
Sbjct: 356 GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 415

Query: 366 ALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           A +    M  + +S+ +++++G   LHG
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHG 443


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/577 (34%), Positives = 319/577 (55%), Gaps = 37/577 (6%)

Query: 6   LISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I  GF     +A   I   S+  NL    KI   +   ++ +WN  I G+++ G   EA
Sbjct: 304 VIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEA 363

Query: 63  VDLYKQMLRNGGTRPDNFTY-PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           V L+K M+   G + D+ T+   L  V  S  L++   E+  ++++ G   D+Y+ +A++
Sbjct: 364 VALFKAMV-TSGVKLDSITFASFLPSVLKSGSLKYCK-EVHSYIVRHGVPFDVYLKSALV 421

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++   GD+ +AC  F ++ + ++    ++I+G+V +G   EA+ LFR +  E + P+ +
Sbjct: 422 DIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCL 481

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           TM  ++ ACA L  L LG+E+H  I + GL     + +++  MY K G+L          
Sbjct: 482 TMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRL---------- 531

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                D+A + F  +P K  V WN +I  + Q  + + A+ LF 
Sbjct: 532 ---------------------DLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFR 570

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           +M  +G K D+V+    LSAC+   AL  G  +H F+ + +F  +  + + L+DMY+KCG
Sbjct: 571 QMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCG 630

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            +A A  VF  M  +N +++ +II     HG+  + +  F EM+  G+ PD +TFL I+S
Sbjct: 631 KLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMS 690

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLVDEG  YF  M+  + +  +++H++CMVDL GR+G L EA   I+SMP   D 
Sbjct: 691 ACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDA 750

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
             WG+L  ACRLHGNV + + A+  L+ELDP +SG YVLL+N++  +  WE   KVR +M
Sbjct: 751 GTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLM 810

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +E+GV+K PG S I+VNG  + F   D  HP+  +IY
Sbjct: 811 KEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEIY 847



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 42/457 (9%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           S  WN  IRGF   G    A+  + +ML      PD +T+P + K C  L    L   + 
Sbjct: 142 SLPWNWLIRGFSMLGCFDFALMFFFRML-GSNVAPDKYTFPYVIKACGGLNNVPLCKMVH 200

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
                +GF +D+++ +++I ++   G +  A  +FDE  VR+ + WN ++NG+V++G   
Sbjct: 201 ELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFN 260

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
            A+  F++M+   V+P+ V+ + ++S CA    +  G ++H  +  SG      +AN ++
Sbjct: 261 SALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTII 320

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            MY KCG L  A +IFD M     V+   +I GY + GF D                   
Sbjct: 321 TMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTD------------------- 361

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
                       EA+ALF  M  +G+K D++T    L +  + G+L     +H +I +  
Sbjct: 362 ------------EAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHG 409

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
              +V L +ALVD+Y K G++  A + F +    +    TA+I G  L+G  ++A++ F 
Sbjct: 410 VPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFR 469

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY----SCMVDL 458
            +I  G++P+ +T   +L AC     +  G++    +     L   L++     S +  +
Sbjct: 470 WLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDI-----LKKGLENVCQVGSSITYM 524

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             +SG L+ A Q  R MP+  D V W  +  +   +G
Sbjct: 525 YAKSGRLDLAYQFFRRMPV-KDSVCWNLMIVSFSQNG 560



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 210/450 (46%), Gaps = 34/450 (7%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WNV + G+++ G    A+  +++M RN   +P++ ++  L  VCA+ G+   G ++ G V
Sbjct: 246 WNVMLNGYVKNGDFNSALGTFQEM-RNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLV 304

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           ++ GF+ D  V N +I ++  CG+L  A  +FD     + V+WN LI G+V++GF  EA+
Sbjct: 305 IRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAV 364

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LF+ M    V+ D +T    + +  +   L   +E+H YI   G+   V L +AL+D+Y
Sbjct: 365 ALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIY 424

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            K G +E A + F       V  CT MI GY   G                         
Sbjct: 425 FKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGL------------------------ 460

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                  + EAL LF  +   G+ P+ +T    L AC+ L +L  G  +H  I K+    
Sbjct: 461 -------NVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLEN 513

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
              +G+++  MYAK G +  A Q F  MP ++S+ +  +I   + +GK   AI  F +M 
Sbjct: 514 VCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMG 573

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G   D ++    LSAC +   +  G++    +     +S      S ++D+  + G L
Sbjct: 574 TSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVA-STLIDMYSKCGKL 632

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             A  +   M    + V W ++  A   HG
Sbjct: 633 ALARSVFDMMDWKNE-VSWNSIIAAYGNHG 661



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 180/399 (45%), Gaps = 39/399 (9%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   VL  G +  + + + ++ ++V C       N+F    +   + WN LI GF   G
Sbjct: 97  QIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLG 156

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A+  F  M    V PD+ T   ++ AC  L ++ L + +H      G  + + + +
Sbjct: 157 CFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGS 216

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+ +Y   G +  A+ +FD                               +LP +  + 
Sbjct: 217 SLIKLYTDNGYIHDAKYLFD-------------------------------ELPVRDCIL 245

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN ++ GYV+      AL  F EM+ + +KP++V+ V  LS C+  G +  GI +H  + 
Sbjct: 246 WNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVI 305

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +  F  +  +   ++ MY+KCGN+  A ++F  MP+ +++T+  +I G   +G   +A++
Sbjct: 306 RSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVA 365

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS-IFRLSPKLKHY--SCMV 456
            F  M+  G+  D ITF   L +    G +    KY  ++ S I R       Y  S +V
Sbjct: 366 LFKAMVTSGVKLDSITFASFLPSVLKSGSL----KYCKEVHSYIVRHGVPFDVYLKSALV 421

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           D+  + G +E A +  +   +  DV V  A+     L+G
Sbjct: 422 DIYFKGGDVEMACKTFQQNTL-VDVAVCTAMISGYVLNG 459



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 35/289 (12%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           R+IH  +   G+  ++ L + ++ MYV C   +    +F          C   +      
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLF----------CRLQLC----- 140

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
                           Y +PWN +I G+        AL  F  M  + + PD  T  + +
Sbjct: 141 ----------------YSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVI 184

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
            AC  L  +     +H       F++++ +G++L+ +Y   G I  A  +F E+P R+ +
Sbjct: 185 KACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCI 244

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-Q 438
            +  ++ G   +G    A+  F EM    + P+ ++F+ +LS C   G+V  G +     
Sbjct: 245 LWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLV 304

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           + S F   P +   + ++ +  + G L +A ++   MP   D V W  L
Sbjct: 305 IRSGFESDPTVA--NTIITMYSKCGNLFDARKIFDIMPQ-TDTVTWNGL 350


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/493 (38%), Positives = 286/493 (58%), Gaps = 11/493 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           E+    ++ G D D  V   +   + + G L LA  +   +     V + S I+     G
Sbjct: 48  ELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 107

Query: 160 FPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
               A+ L  +M L   + P   T+   + AC     L +GR +H Y  +  L+    +A
Sbjct: 108 LHHAALALLSEMLLSHGLLPTAHTLSASLPACG---GLAVGRALHGYAVKLALSGEPYVA 164

Query: 219 NALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            AL+ MY + G   +A  +FD M  +  VVS T M+  YAK G LD AR +FD LP K +
Sbjct: 165 TALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDL 224

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + WNA++ GY Q  R  EAL LF  M  +G++PD V+ V  LSA +QLG  + G W+H F
Sbjct: 225 ICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSF 284

Query: 338 I---EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHG 392
           +         LN  +GTAL+DMY KCG++  A+ VF ++   +R+ + + A++ G A+HG
Sbjct: 285 VTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHG 344

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
            + +A++ F ++   GL P +ITF+G+L+AC H GLVDEGR+ F  M+  + + PK++HY
Sbjct: 345 HSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHY 404

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
            CMVDLLGR+G +EEA +L++SM     D V+W +L  ACRLH N+ +G+R A  L+   
Sbjct: 405 GCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANG 464

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
             +SG YVLL+NMY  +  W E G+VR MM   G++K PGCS++EV   + EF+  D+SH
Sbjct: 465 LANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSH 524

Query: 572 PELEQIYDCLVQL 584
           P   +IY  L ++
Sbjct: 525 PRAAEIYAKLEEV 537



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 70/409 (17%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A + S  LD    +L    +P +  +  AI      G    A+ L  +ML + G  P   
Sbjct: 71  AYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAH 130

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI------------------- 121
           T       C  L +   G  + G+ +KL    + YV  A++                   
Sbjct: 131 TLSASLPACGGLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGM 187

Query: 122 ----HV---------FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF 168
               HV         +   G L  A ++FD    ++L+ WN++++G+ + G P EA+RLF
Sbjct: 188 QPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLF 247

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG---LTLTVPLANALMDMY 225
           R M    VEPDEV+++  +SA AQL     GR +H +++ S    + L   +  AL+DMY
Sbjct: 248 RRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMY 307

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KCG LE A  +F  +                  G  D           + +V WNA++ 
Sbjct: 308 YKCGSLEDAVAVFGDL------------------GAGD-----------RDIVAWNAMVN 338

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFN 344
           GY     S+EALA F +++A G+ P  +T +  L+ACS  G +D+G  + R + +E    
Sbjct: 339 GYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIE 398

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEM--PERNSLTYTAIIGGLALH 391
             V     +VD+  + G + +A ++   M   + +++ + +++    LH
Sbjct: 399 PKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLH 447


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 298/546 (54%), Gaps = 36/546 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYE 100
           N  SWN  I GF + G +    +L+  M R  GTRPD  T   L + V ++  LRFL   
Sbjct: 117 NIASWNAMIIGFSQIGSLDRVFNLFMGM-RLVGTRPDAATVIGLTRAVISAKSLRFLK-A 174

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRS 158
           +    ++ G D D  V N  I  +  CG+L LA  VF   +   R+ VSWNSLI  +   
Sbjct: 175 VHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHF 234

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G   +A++ ++ +  +  +PD  T+I ++S+C Q E L  G  IH +  + G    + L 
Sbjct: 235 GKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLI 294

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N L+ MY +CG + SA                                 +FD +  +  V
Sbjct: 295 NTLISMYSRCGDISSAT-------------------------------ILFDGMSIRTCV 323

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W A+I GY +  R  +AL LF+ M+ TG KPD VT +  +S C + GAL  G WI  + 
Sbjct: 324 SWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYA 383

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
                  +VV+  AL+DMYAKCG++  A ++F+ +P R  +++TA+I   AL+G+  +A+
Sbjct: 384 SLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREAL 443

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             FS +   G+ P+ ITFL +L ACCHGG +++GR+ F  M+  + ++P L HYSCM+DL
Sbjct: 444 DLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDL 503

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGR G L EA ++I+ MPM  D  +WGAL  AC++H N+ IGE  +  L EL P+ +  +
Sbjct: 504 LGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLFELQPRVAVSF 563

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           V +AN+Y     W+E   +RK M    + K+PG S ++VNG+ + F V D+SH +   IY
Sbjct: 564 VEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQVNGMSHVFFVEDRSHHDSLLIY 623

Query: 579 DCLVQL 584
           + L  L
Sbjct: 624 EALGNL 629



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/487 (30%), Positives = 236/487 (48%), Gaps = 44/487 (9%)

Query: 38  VQNPNSFS-------WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            Q+ N FS       WN +IRG +  G   +A+ L+ Q+  NG  +P+NFT+P L K CA
Sbjct: 5   TQHLNCFSKLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNG-LQPNNFTFPFLSKACA 63

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            L        I  HV+K  F  D+YV  A++ ++V CG +  A N+FD+  VRN+ SWN+
Sbjct: 64  KLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNA 123

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I GF + G       LF  M+L    PD  T+IG+  A    + L   + +H    E+G
Sbjct: 124 MIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETG 183

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L     ++N  +  Y KCG+L+ A+ +F   + KT  S                      
Sbjct: 184 LDADTSVSNTWIAAYSKCGELQLAKMVFHG-IQKTARSS--------------------- 221

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                  V WN++I  Y    +  +A+  +  +   G KPDA T +  LS+C Q  AL  
Sbjct: 222 -------VSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIY 274

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH    +   + ++ L   L+ MY++CG+I+ A  +F  M  R  +++TA+I G + 
Sbjct: 275 GFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSE 334

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            G+  DA+  F+ M   G  PD +T L ++S C   G +  G  +    +S+  L   + 
Sbjct: 335 VGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGH-WIDNYASLHELKKDVV 393

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
             + ++D+  + G L +A ++  S+P    VV W A+  AC L+G      R A+ L  L
Sbjct: 394 VCNALIDMYAKCGSLNDAREIFYSLPNRT-VVSWTAMIAACALNGEF----REALDLFSL 448

Query: 511 DPQDSGI 517
              +SGI
Sbjct: 449 -LSESGI 454



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 184/392 (46%), Gaps = 38/392 (9%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNP--NSFSWNVAIRGFLETGKMRE 61
           TGL +     +  IA  A S+   L     +   +Q    +S SWN  I  +   GK  +
Sbjct: 182 TGLDADTSVSNTWIA--AYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVD 239

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           AV  YK +L +G  +PD  T   L   C        G+ I GH  +LG D D+ + N +I
Sbjct: 240 AVKSYKGLLCDG-FKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLI 298

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CGD+  A  +FD   +R  VSW ++I+G+   G   +A+ LF  M+    +PD V
Sbjct: 299 SMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIV 358

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T++ ++S C +   L LG   HW                 +D Y    +L+         
Sbjct: 359 TVLSLISGCGKTGALGLG---HW-----------------IDNYASLHELK--------- 389

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K VV C  +I  YAK G L+ AR+IF  LP + VV W A+I         +EAL LF 
Sbjct: 390 --KDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFS 447

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMYAKC 360
            +  +GI+P+ +T +  L AC   G L+ G      + E+   N  +   + ++D+  + 
Sbjct: 448 LLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRK 507

Query: 361 GNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
           G + +AL+V  +MP + +   + A++G   +H
Sbjct: 508 GKLIEALEVIQDMPMKPDEGIWGALLGACKIH 539


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 299/524 (57%), Gaps = 23/524 (4%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY-----PLLFKVCASLGLR 95
           P+  +W   IR +L  G  REA+ +Y  + R G        Y     PL+ K CASL + 
Sbjct: 58  PSLSNWCHLIRSYLSQGAPREALLVYTGLRRKG-------VYLLGVAPLVLKACASLSIV 110

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
             G  +    +K G D D+ +  +++ ++  CG++  +  VFD    RN V+WN++I G+
Sbjct: 111 KHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGY 170

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
           + +G  + A+ LF  M +       VT I M+   A+  D    R   ++         V
Sbjct: 171 LGNGDSKSAVLLFEKMSIRTA----VTWIEMIDGFARSGDTETARR--FFDDVPSELRNV 224

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
                ++D Y +  ++E+A E+F+ M  +   + ++MI GY K G +  AR IFD +P +
Sbjct: 225 VTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVR 284

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            +V WN++I GY Q   S+EAL  F +MQA G +PD VT    LSACSQLG LD G  IH
Sbjct: 285 NLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIH 344

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
             +  +   LN  +   LVDMYAKCG++A A  +F  M  RN   + ++I G A+HG++ 
Sbjct: 345 HMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSK 404

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           +A+ +F  M      PDEITFL +LSAC HGG V+ G + F++M   + L+  +KHY C+
Sbjct: 405 EALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCL 463

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-D 514
           +DLLGR+G ++EA  LI+ MP+  + VVWGAL  ACR+H ++ + +R   +++++D    
Sbjct: 464 IDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNIS 523

Query: 515 SGI---YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           SG    YVLL+N+Y  S+ WE+A K+R  M  +G +KT GCSSI
Sbjct: 524 SGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 567


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/540 (35%), Positives = 299/540 (55%), Gaps = 32/540 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  I  +     + E ++LY QM+  GG +PD+ T+ +  K  +SL     G  I+  
Sbjct: 73  AWNAMIVAYSRRYHLTEVLNLYHQMVNEGG-KPDSSTFTVAIKASSSLKDLEAGERIWRR 131

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +  G+  D++V ++V++++V CG +  A  VFD+   R++V W ++I G V++G   EA
Sbjct: 132 AVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEA 191

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +FR M+ E +E D V M+G+V ACA L +L LG  +H                     
Sbjct: 192 VDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVH--------------------- 230

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
                       +   M+   V+  T+++  YAK G L++A ++F+ +P K  V W A+I
Sbjct: 231 ---------GHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALI 281

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            G+ Q   ++ AL L  EMQ+   KPD    V  L ACSQ+G L  G  IH +I +    
Sbjct: 282 SGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRR-LG 340

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
             +VLGTAL+DMYAKCG+++ A  +F  +  R+ + +  +I    +HG   + +S F +M
Sbjct: 341 FELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKM 400

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
               + PD  TF  +LSA  H G VD G+ +F  M +  ++ P  KHY+CMVDL  R+G 
Sbjct: 401 KEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGR 460

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           +EEA QLI SM     + +W AL   C  + N+  GE AA K+L+L+P D GIY L++N 
Sbjct: 461 VEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNF 520

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +  + MW+    +RK+M+E G++K PG S++EVNG    F+V DK+H + E+I   L  L
Sbjct: 521 FSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLVEDKNHHQYEEILQMLDSL 580



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 182/378 (48%), Gaps = 35/378 (9%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           VI  +   G +  A ++FD+   R + +WN++I  + R     E + L+  M  E  +PD
Sbjct: 46  VIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPD 105

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T    + A + L+DL  G  I     + G    V + ++++++YVKCGK++ A+ +FD
Sbjct: 106 SSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFD 165

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            MV + VV                                W  +I G VQ     EA+ +
Sbjct: 166 KMVKRDVVC-------------------------------WATMITGLVQNGNVLEAVDM 194

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYA 358
           F  M+  GI+ D V  +  + AC+ LG L  G+ +H   + +E    +V+L T+LVDMYA
Sbjct: 195 FRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYA 254

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           K G++  A +VF +MP +N++++ A+I G A +G A  A+    EM  +   PD    + 
Sbjct: 255 KIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVS 314

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
            L AC   G +  G+     +  + RL  +L   + ++D+  + G L  A  +   +  +
Sbjct: 315 ALLACSQVGHLKLGKSIHGYI--VRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVD-S 371

Query: 479 ADVVVWGALFFACRLHGN 496
            DV++W  +  +  +HG+
Sbjct: 372 RDVILWNTMIASYGIHGD 389



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 134/270 (49%), Gaps = 4/270 (1%)

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           +I  YA+ G +  AR +FD LP++ V  WNA+I  Y +     E L L+H+M   G KPD
Sbjct: 46  VIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPD 105

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           + T    + A S L  L+ G  I R      +  +V +G++++++Y KCG I +A  VF 
Sbjct: 106 SSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFD 165

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           +M +R+ + +  +I GL  +G  L+A+  F  M   G+  D +  LG++ AC + G +  
Sbjct: 166 KMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKL 225

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF--F 489
           G            L   +   + +VD+  + G LE A ++   MP   + V WGAL   F
Sbjct: 226 GLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMP-RKNAVSWGALISGF 284

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
           A       ++     M+ LE  P D+ + V
Sbjct: 285 AQNGFAEYALDLLVEMQSLEFKP-DTAVLV 313



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 146/293 (49%), Gaps = 17/293 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L+  +++   +   N+ SW   I GF + G    A+DL  +M ++   +PD        
Sbjct: 258 DLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEM-QSLEFKPDTAVLVSAL 316

Query: 87  KVCASLGLRFLGYEIFGHVL-KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
             C+ +G   LG  I G+++ +LGF  ++ +  A+I ++  CG L  A  +FD    R++
Sbjct: 317 LACSQVGHLKLGKSIHGYIVRRLGF--ELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDV 374

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           + WN++I  +   G  +E + LF  M+   + PD  T   ++SA +    +++G+  +W+
Sbjct: 375 ILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQ--YWF 432

Query: 206 ---ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAK 258
              ++E  +  +      ++D++ + G++E A ++ +SM  +  ++    ++     Y  
Sbjct: 433 NAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRN 492

Query: 259 FGFLDI-ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE-MQATGIK 309
             F ++ A+KI D  P+   +   A++  +    R  + +++  + M+ TG+K
Sbjct: 493 LLFGEVAAKKILDLNPDDLGI--YALVSNFFSLARMWDRVSILRKIMKETGMK 543


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/556 (35%), Positives = 299/556 (53%), Gaps = 32/556 (5%)

Query: 32  TKILFNVQN-PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            + LF++    N  SWN  I G+ + G  R   +L ++M R    R +  T   +   C+
Sbjct: 353 ARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
                    EI G+  + GF  D  V NA +  +  C  L  A  VF     + + SWN+
Sbjct: 413 GEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNA 472

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           LI    ++GFP +++ LF  M    ++PD  T+  ++ ACA+L+ L  G+EIH ++  +G
Sbjct: 473 LIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNG 532

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L L   +  +LM +Y++C                     ++M++G          + IFD
Sbjct: 533 LELDEFIGISLMSLYIQC---------------------SSMLLG----------KLIFD 561

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            +  K +V WN +I G+ Q +   EAL  F +M + GIKP  +     L ACSQ+ AL  
Sbjct: 562 KMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRL 621

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  +H F  K + + +  +  AL+DMYAKCG + ++  +F  + E++   +  II G  +
Sbjct: 622 GKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGI 681

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG  L AI  F  M   G  PD  TFLG+L AC H GLV EG KY  QM +++ + PKL+
Sbjct: 682 HGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLE 741

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY+C+VD+LGR+G L EA +L+  MP   D  +W +L  +CR +G++ IGE  + KLLEL
Sbjct: 742 HYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLEL 801

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +P  +  YVLL+N+Y     W+E  KVR+ M+E G+ K  GCS IE+ G++Y F+V D S
Sbjct: 802 EPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGS 861

Query: 571 HPELEQIYDCLVQLTR 586
             E ++I    ++L +
Sbjct: 862 LSESKKIQQTWIKLEK 877



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 239/523 (45%), Gaps = 56/523 (10%)

Query: 4   TGLISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
            G  S  F  + LIA    C   ES       K+   ++N N  SWN  +    E G   
Sbjct: 224 AGGFSDAFVGNALIAMYGKCGFVESA-----VKVFETMRNRNLVSWNSVMYACSENGGFG 278

Query: 61  EAVDLYKQML--RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           E   ++K++L     G  PD  T   +   CA++G   +G  + G   KLG   ++ V+N
Sbjct: 279 ECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNN 338

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVE 177
           +++ ++  CG LG A  +FD +  +N+VSWN++I G+ + G  R    L ++MQ  E+V 
Sbjct: 339 SLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVR 398

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            +EVT++ ++ AC+    L   +EIH Y    G      +ANA +  Y KC  L+ AE +
Sbjct: 399 VNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERV 458

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  M  KTV S                               WNA+IG + Q     ++L
Sbjct: 459 FCGMEGKTVSS-------------------------------WNALIGAHAQNGFPGKSL 487

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF  M  +G+ PD  T    L AC++L  L  G  IH F+ +    L+  +G +L+ +Y
Sbjct: 488 DLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLY 547

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
            +C ++     +F +M  ++ + +  +I G + +    +A+  F +M+  G+ P EI   
Sbjct: 548 IQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVT 607

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH---YSC-MVDLLGRSGLLEEAEQLIR 473
           G+L AC     +  G++  +     F L   L      +C ++D+  + G +E+++ +  
Sbjct: 608 GVLGACSQVSALRLGKEVHS-----FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFD 662

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
            +    D  VW  +     +HG+       A++L EL     G
Sbjct: 663 RVN-EKDEAVWNVIIAGYGIHGH----GLKAIELFELMQNKGG 700



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 36/371 (9%)

Query: 9   HGFAPSRLIA---FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL 65
           HGF    L+A     A ++  +LD   ++   ++     SWN  I    + G   +++DL
Sbjct: 430 HGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDL 489

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           +  M+ + G  PD FT   L   CA L     G EI G +L+ G ++D ++  +++ +++
Sbjct: 490 FLVMM-DSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYI 548

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
            C  + L   +FD+   ++LV WN +I GF ++  P EA+  FR M    ++P E+ + G
Sbjct: 549 QCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTG 608

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC+Q+  L LG+E+H +  ++ L+    +  AL+DMY KCG +E ++ IFD      
Sbjct: 609 VLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR----- 663

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                                     + EK    WN II GY       +A+ LF  MQ 
Sbjct: 664 --------------------------VNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQN 697

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
            G +PD+ T +  L AC+  G + +G+ ++ +          +     +VDM  + G + 
Sbjct: 698 KGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLT 757

Query: 365 KALQVFHEMPE 375
           +AL++ +EMP+
Sbjct: 758 EALKLVNEMPD 768



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 186/387 (48%), Gaps = 41/387 (10%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F +N  + G+      R+A+ L+ ++L      PDNFT P + K CA +    LG  +  
Sbjct: 160 FLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHA 219

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
             LK G   D +V NA+I ++  CG +  A  VF+    RNLVSWNS++     +G   E
Sbjct: 220 LALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGE 279

Query: 164 AIRLFRDMQLERVE---PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
              +F+ + +   E   PD  TM+ ++ ACA + ++ +G  +H    + G+T  V + N+
Sbjct: 280 CCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNS 339

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMY KCG L  A  +FD    K VVS  T+I GY+K G     R +F+          
Sbjct: 340 LVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDF---RGVFE---------- 386

Query: 281 NAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACS---QLGALDDGIWIHR 336
                             L  EMQ    ++ + VT ++ L ACS   QL +L +   IH 
Sbjct: 387 ------------------LLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKE---IHG 425

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +  +  F  + ++  A V  YAKC ++  A +VF  M  +   ++ A+IG  A +G    
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 397 AISYFSEMIGVGLMPDEITFLGILSAC 423
           ++  F  M+  G+ PD  T   +L AC
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLAC 512



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 172/383 (44%), Gaps = 40/383 (10%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP---LLFKVCASLGLRFLGYEIFGHV- 105
           +    ++G + +A++L     +NG     + +     +L + C       +G ++   V 
Sbjct: 60  LHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVS 119

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
                  D+ +   +I ++ +CG    +  VFD +  ++L  +N+L++G+ R+   R+AI
Sbjct: 120 ASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAI 179

Query: 166 RLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
            LF + +    + PD  T+  +  ACA + D+ LG  +H    ++G      + NAL+ M
Sbjct: 180 SLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAM 239

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG +ESA ++F++M N+ +VS                               WN+++
Sbjct: 240 YGKCGFVESAVKVFETMRNRNLVS-------------------------------WNSVM 268

Query: 285 GGYVQAKRSKEALALFHEM---QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
               +     E   +F  +   +  G+ PD  T V  + AC+ +G +  G+ +H    K 
Sbjct: 269 YACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKL 328

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
                V +  +LVDMY+KCG + +A  +F     +N +++  II G +  G         
Sbjct: 329 GITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELL 388

Query: 402 SEMI-GVGLMPDEITFLGILSAC 423
            EM     +  +E+T L +L AC
Sbjct: 389 QEMQREEKVRVNEVTVLNVLPAC 411



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 126/300 (42%), Gaps = 27/300 (9%)

Query: 295 EALALFHEMQATG------IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNV 347
           +AL L H     G      I  +A+  +  L AC     +  G  +H  +   +    +V
Sbjct: 71  DALNLLHSHAQNGTVSSSDISKEAIGIL--LRACGHHKNIHVGRKVHALVSASHKLRNDV 128

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI-G 406
           VL T ++ MY+ CG+ + +  VF    E++   Y A++ G + +    DAIS F E++  
Sbjct: 129 VLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSA 188

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS------CMVDLLG 460
             L PD  T   +  AC     V+ G        ++  L+ K   +S       ++ + G
Sbjct: 189 TDLAPDNFTLPCVAKACAGVADVELGE-------AVHALALKAGGFSDAFVGNALIAMYG 241

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           + G +E A ++  +M    ++V W ++ +AC  +G    GE   +    L  ++ G+   
Sbjct: 242 KCGFVESAVKVFETM-RNRNLVSWNSVMYACSENG--GFGECCGVFKRLLISEEEGLVPD 298

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS-SIEVNGLLYEFIVRDKSHPELEQIYD 579
           +A M          G+VR  M   G+    G +  + VN  L +   +     E   ++D
Sbjct: 299 VATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD 358


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/510 (36%), Positives = 291/510 (57%), Gaps = 32/510 (6%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H LK   + D  V + +  +++SC  + LA  +FDE    +++ WN +I  +  +G
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               AI L+  M    V P++ T   ++ AC+ L  +  G EIH +    GL   V +  
Sbjct: 89  PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCT 148

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD---------------- 263
           AL+D Y KCG L  A+ +F SM ++ VV+   MI G + +G  D                
Sbjct: 149 ALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICP 208

Query: 264 ----------------IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                            ARKIFD +  +  V W+A+IGGYV +   KEAL +F  MQ +G
Sbjct: 209 NSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSG 268

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           I PD  T +  L ACS L AL  G   H ++    F  + ++  AL+DMY+KCG I+ A 
Sbjct: 269 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAR 328

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF+ M   + +++ A+I G  +HG  ++A+  F +++ +GL PD+ITF+ +LS+C H G
Sbjct: 329 EVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 388

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           LV EGR +F  MS  F + P+++H  CMVD+LGR+GL++EA   IR+MP   DV +W AL
Sbjct: 389 LVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR+H N+ +GE  + K+  L P+ +G +VLL+N+Y  +  W++A  +R   ++ G++
Sbjct: 449 LSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           K PGCS IE+NG+++ F+  D+SH +L QI
Sbjct: 509 KIPGCSWIEINGIVHAFVGGDQSHLQLSQI 538



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 182/394 (46%), Gaps = 37/394 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   + NP+   WN  IR +   G    A+DLY  ML + G RP+ +TYP + K C+ L
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML-HLGVRPNKYTYPFVLKACSGL 122

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G EI  H    G + D++V  A++  +  CG L  A  +F     R++V+WN++I
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL-------EDLNLGREIHW- 204
            G    G   +A++L   MQ E + P+  T++G++  C  L       + + +  E+ W 
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWS 242

Query: 205 -----YISESGLTLTV------------PLANALMDMYVKCGKLESAEEIFDS------- 240
                Y++   +   +            P    ++ +   C  L + +  F S       
Sbjct: 243 AMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 302

Query: 241 -MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
                T++ C  +I  Y+K G +  AR++F+ +    +V WNA+I GY       EAL L
Sbjct: 303 GFATDTLI-CNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGL 361

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYA 358
           FH++ A G+KPD +T +  LS+CS  G + +G +W        +    +     +VD+  
Sbjct: 362 FHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILG 421

Query: 359 KCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           + G I +A      MP E +   ++A++    +H
Sbjct: 422 RAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH 455



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 39/294 (13%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC Q + L   ++IH +  ++       + + L  +Y+ C ++  A  +FD + N +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           V+    +I  YA                      WN    G         A+ L+H M  
Sbjct: 74  VILWNQIIRAYA----------------------WNGPFDG---------AIDLYHSMLH 102

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G++P+  T    L ACS L A++DG+ IH   +      +V + TALVD YAKCG + +
Sbjct: 103 LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVE 162

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A ++F  M  R+ + + A+I G +L+G   DA+    +M   G+ P+  T +G+L  C  
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC-- 220

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
              +   RK F  M     +S     +S M+     S  ++EA  + R M ++ 
Sbjct: 221 -QCLLYARKIFDVMGVRNEVS-----WSAMIGGYVASDCMKEALDIFRMMQLSG 268



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 153/349 (43%), Gaps = 37/349 (10%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           G  P+       +   + L Y  KI   +   N  SW+  I G++ +  M+EA+D+++ M
Sbjct: 205 GICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFR-M 263

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           ++  G  PD  T   +   C+ L     G+   G+++  GF  D  + NA+I ++  CG 
Sbjct: 264 MQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGK 323

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +  A  VF+     ++VSWN++I G+   G   EA+ LF D+    ++PD++T I ++S+
Sbjct: 324 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 383

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C                S SGL +               G+L       D  +   +  C
Sbjct: 384 C----------------SHSGLVME--------------GRLWFDAMSRDFSIVPRMEHC 413

Query: 250 TTMIVGYAKFGFLDIARKIFDDLP-EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
             M+    + G +D A     ++P E  V  W+A++      K  +    +  ++Q+ G 
Sbjct: 414 ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG- 472

Query: 309 KPDAVTTVHCLSAC-SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
            P++      LS   S  G  DD    H  I ++++ L  + G + +++
Sbjct: 473 -PESTGNFVLLSNIYSAAGRWDDA--AHIRITQKDWGLKKIPGCSWIEI 518



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 4/208 (1%)

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +H L AC Q  +L +   IH+   K   N +  +   L  +Y  C  +  A ++F E+P 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            + + +  II   A +G    AI  +  M+ +G+ P++ T+  +L AC     +++G + 
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            +  + +F L   +   + +VD   + G+L EA++L  SM    DVV W A+   C L+G
Sbjct: 132 HSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 496 NVSIGERAAMKLLE--LDPQDSGIYVLL 521
                 +  M++ E  + P  S I  +L
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVL 217


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 299/543 (55%), Gaps = 32/543 (5%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
            SWN  + G+ + G +RE + L  +M +  G  PD  T+  L    A      +G  + G
Sbjct: 213 ISWNSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHG 271

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           H+L+ G + D ++  ++I +++ CG++  A  +F+    ++++SW ++I+G V++     
Sbjct: 272 HILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADM 331

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+ +FR M   RV P   T+  +++ACA+L    LG  +H YI    + L +P  N+L+ 
Sbjct: 332 AVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVT 391

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY KCG LE +  +FD M  + +VS   ++ G+A+ G L                     
Sbjct: 392 MYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHL--------------------- 430

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
                      +AL LF+EM+    +PD++T V  L AC+ +GAL  G WIH F+ K   
Sbjct: 431 ----------CKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCL 480

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
              +++ TALVDMY+KCG++  A + F  MP+++ +++++II G   HGK   A+  +S+
Sbjct: 481 GPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSD 540

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
            +  G+ P+ + +L ILSAC H GLVD+G  +F  M+  F + P+L+H +C+VDLL R+G
Sbjct: 541 FLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAG 600

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            +EEA    + M     + V G L  ACR  GNV +G+  A +++ L P ++G YV LA+
Sbjct: 601 RVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAH 660

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
            Y     W+  G+V   M+   ++K PG S IE++G +  F     SHP+ E+I D ++ 
Sbjct: 661 SYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIIDRVLL 720

Query: 584 LTR 586
           L +
Sbjct: 721 LNK 723



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 241/502 (48%), Gaps = 44/502 (8%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           + G  S  +  + LI F   S+  +     K+   + + N   W   I  +   G+   A
Sbjct: 76  VDGYSSDSYIATSLINF--YSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVA 133

Query: 63  VDLYKQMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
             +Y  M R  G +P + T   LL  V   + L+ L       V++ GF  D+ + N+++
Sbjct: 134 FSMYNIM-RRQGIQPSSVTMLGLLSGVLELVHLQCL----HACVIQYGFGSDVALANSML 188

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           +V+  CG +  A  +F+    R+++SWNSL++G+ + G  RE ++L   M+ + +EPD+ 
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQ 248

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   +VSA A    L +G+ +H +I  +GL     +  +L+ MY+KCG + SA  IF+ M
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
           ++K V+S T MI G  +    D+A  +F  + +  V+P  A I                 
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV-------------- 354

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
                            L+AC++LG+   G  +H +I ++   L++    +LV MYAKCG
Sbjct: 355 -----------------LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCG 397

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++ ++  VF  M  R+ +++ AI+ G A +G    A+  F+EM      PD IT + +L 
Sbjct: 398 HLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQ 457

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G + +G K+     +   L P +   + +VD+  + G L  A++    MP   D+
Sbjct: 458 ACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQ-QDL 515

Query: 482 VVWGALFFACRLHGNVSIGERA 503
           V W ++      HG    GE A
Sbjct: 516 VSWSSIIAGYGSHGK---GETA 534



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 208/448 (46%), Gaps = 37/448 (8%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           NP + S+N  I      G   + +  Y  ML +  T PD  T+P L K C SL L   G 
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSML-STDTPPDAHTFPSLVKACTSLDLFSHGL 68

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
                V+  G+  D Y+  ++I+ +   G    A  VFD    RN+V W ++I  + R+G
Sbjct: 69  SFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAG 128

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A  ++  M+ + ++P  VTM+G++S   +L  L     +H  + + G    V LAN
Sbjct: 129 EHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALAN 185

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +++++Y KCG++E A+ +F+ M  + V+S  +++ GYA+ G +                 
Sbjct: 186 SMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI----------------- 228

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                         +E L L   M+  GI+PD  T    +SA +    L  G  +H  I 
Sbjct: 229 --------------REVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHIL 274

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +     +  + T+L+ MY KCGN+  A ++F  M  ++ +++TA+I GL  +  A  A++
Sbjct: 275 RAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVT 334

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            F  M+   +MP   T   +L+AC   G    G      +    R+   +   + +V + 
Sbjct: 335 VFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQ-RIKLDIPSQNSLVTMY 393

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + G LE++  +   M    D+V W A+
Sbjct: 394 AKCGHLEQSCSVFDRMSR-RDIVSWNAI 420



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 181/360 (50%), Gaps = 33/360 (9%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N++   +I   + + +  SW   I G ++      AV ++++ML++    P   T   + 
Sbjct: 297 NVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR-VMPSTATIASVL 355

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   LG  + G++L+    +D+   N+++ ++  CG L  +C+VFD    R++V
Sbjct: 356 AACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIV 415

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN++++G  ++G   +A+ LF +M+  R  PD +T++ ++ ACA +  L+ G+ IH ++
Sbjct: 416 SWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFV 475

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           ++S L   + +  AL+DMY KCG L SA++ FD M  + +VS +++I GY   G      
Sbjct: 476 TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHG------ 529

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                    + + AL ++ +   TGI+P+ V  +  LSACS  G
Sbjct: 530 -------------------------KGETALRMYSDFLHTGIQPNHVIYLSILSACSHNG 564

Query: 327 ALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
            +D G+ + H   +       +     +VD+ ++ G + +A   +  M  + S+    I+
Sbjct: 565 LVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGIL 624



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 44/284 (15%)

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           AK  FL+ A K            +NAII     A    + L  +  M +T   PDA T  
Sbjct: 4   AKPSFLNPATK-----------SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFP 52

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             + AC+ L     G+  H+ +  + ++ +  + T+L++ Y+K G+   A +VF  M +R
Sbjct: 53  SLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA--------CCHGGL 428
           N + +T +IG     G+   A S ++ M   G+ P  +T LG+LS         C H  +
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACV 172

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +  G                +   + M+++  + G +E+A+ L   M  A DV+ W +L 
Sbjct: 173 IQYG------------FGSDVALANSMLNVYCKCGRVEDAQALFELMD-ARDVISWNSLV 219

Query: 489 FACRLHGNVSIGERAAMKLL--------ELDPQDSGIYVLLANM 524
                 GN+    R  ++LL        E D Q  G  V  A M
Sbjct: 220 SGYAQLGNI----REVLQLLIRMKTDGIEPDQQTFGSLVSAAAM 259


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 306/573 (53%), Gaps = 63/573 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           SWN  I G+   G + ++V  Y  ML+N G+   +  T+  L  + +  G   LG +I G
Sbjct: 108 SWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHG 167

Query: 104 HVLKLGFD---------VDMY----------------------VHNAVIHVFVSCGDLGL 132
           HV+K GF          VDMY                      ++N +I   + CG +  
Sbjct: 168 HVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVED 227

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           +  +F E   R+ +SW S+I GF ++G  R+AI +FR+M+LE ++ D+ T   +++AC  
Sbjct: 228 SKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGG 287

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           +  L  G+++H YI  +     + +A+AL+DMY KC  ++SAE +F  M  K VVS    
Sbjct: 288 VMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVS---- 343

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
                                      W A++ GY Q   S+EA+  F +MQ  GI+PD 
Sbjct: 344 ---------------------------WTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDD 376

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
            T    +S+C+ L +L++G   H           + +  ALV +Y KCG+I  + ++F+E
Sbjct: 377 FTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           +  ++ +T+TA++ G A  GKA + I  F  M+  GL PD++TF+G+LSAC   GLV++G
Sbjct: 437 ISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKG 496

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            + F  M +   + P   HY+CM+DL  R+G +EEA   I  MP + D + W  L  +CR
Sbjct: 497 NQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCR 556

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
            +GN+ IG+ AA  L+ELDP ++  YVLL+++Y     WEE  ++RK M ++G+ K PGC
Sbjct: 557 FYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGC 616

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           S I+    ++ F   DKS+P  +QIY  L +L 
Sbjct: 617 SWIKYKNQVHVFSADDKSNPFSDQIYSELEKLN 649



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 244/506 (48%), Gaps = 49/506 (9%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           Y  L K+C           +  H++K     + ++ N +I  +   G +  AC VFD+  
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 142 VRNLVSWN-------------------------------SLINGFVRSGFPREAIRLFRD 170
             NL SWN                               SLI+G+   G   ++++ +  
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 171 M-------QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           M        L R+    + ++     C +     LGR+IH ++ + G    V + + L+D
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVK-----LGRQIHGHVVKFGFMSYVFVGSPLVD 186

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY K G +  A ++FD +  K VV   T+I+G  + G ++ ++++F ++ E+  + W ++
Sbjct: 187 MYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSM 246

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I G+ Q    ++A+ +F EM+   ++ D  T    L+AC  + AL +G  +H +I + ++
Sbjct: 247 ITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY 306

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             N+ + +ALVDMY KC NI  A  VF +M  +N +++TA++ G   +G + +A+  FS+
Sbjct: 307 KDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSD 366

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M   G+ PD+ T   ++S+C +   ++EG ++ A+  +   +S  +   + +V L G+ G
Sbjct: 367 MQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF-ITVSNALVTLYGKCG 425

Query: 464 LLEEAEQLIRSMPMAADVVVWGALF--FACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
            +E++ +L   +    D V W AL   +A     N +IG   +M    L P D   ++ +
Sbjct: 426 SIEDSHRLFNEISF-KDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP-DKVTFIGV 483

Query: 522 ANMYRDSNMWEEAGKV-RKMMEERGV 546
            +    + + E+  ++   M+ E G+
Sbjct: 484 LSACSRAGLVEKGNQIFESMINEHGI 509



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 215/446 (48%), Gaps = 73/446 (16%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCAS 91
           ++ F ++  +S SW   I GF + G  R+A+D++++M L N   + D +T+  +   C  
Sbjct: 230 RLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLEN--LQMDQYTFGSVLTACGG 287

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
           +     G ++  ++++  +  +++V +A++ ++  C ++  A  VF +   +N+VSW ++
Sbjct: 288 VMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAM 347

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           + G+ ++G+  EA++ F DMQ   +EPD+ T+  ++S+CA L  L  G + H     SGL
Sbjct: 348 LVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGL 407

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
              + ++NAL+ +Y KCG +E +  +F+ +  K  V+ T ++ GYA+FG           
Sbjct: 408 ISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFG----------- 456

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                               ++ E + LF  M A G+KPD VT +  LSACS+ G ++ G
Sbjct: 457 --------------------KANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKG 496

Query: 332 IWIHRFIEKENFNLNVVLG-TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
             I   +  E+  + +    T ++D++++ G I +A    ++MP                
Sbjct: 497 NQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMP---------------- 540

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-KL 449
                     FS        PD I++  +LS+C   G +D G K+ A+   +  L P   
Sbjct: 541 ----------FS--------PDAISWATLLSSCRFYGNMDIG-KWAAEF--LMELDPHNT 579

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSM 475
             Y  +  +    G  EE  +L + M
Sbjct: 580 ASYVLLSSVYAAKGKWEEVARLRKDM 605



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 15/332 (4%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           KN+     +   +   N  SW   + G+ + G   EAV  +  M +  G  PD+FT   +
Sbjct: 324 KNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKY-GIEPDDFTLGSV 382

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              CA+L     G +     L  G    + V NA++ ++  CG +  +  +F+E   ++ 
Sbjct: 383 ISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDE 442

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HW 204
           V+W +L++G+ + G   E I LF  M    ++PD+VT IG++SAC++   +  G +I   
Sbjct: 443 VTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFES 502

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD 263
            I+E G+         ++D++ + G++E A    + M  +   +S  T++     +G +D
Sbjct: 503 MINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMD 562

Query: 264 I---ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA-------V 313
           I   A +   +L       +  +   Y    + +E   L  +M+  G++ +         
Sbjct: 563 IGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYK 622

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
             VH  SA  +     D I+    +EK N+ +
Sbjct: 623 NQVHVFSADDKSNPFSDQIYSE--LEKLNYKM 652


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 204/590 (34%), Positives = 318/590 (53%), Gaps = 55/590 (9%)

Query: 6   LISHGF-----APSRLIAFCAISESKNLDYCTKILFNVQNPNSFSW--NVAIRGFLETGK 58
           L+ HG      A S+L++  A+   + L     +  +  NP++ ++  N  +R +     
Sbjct: 47  LLKHGLHLDPVAASKLLSSYALH--RRLPASRGVFASFPNPHATTFLPNTLLRAYALNAL 104

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
            REAV ++  M        D+FTY  L K  +S G+  L   +  HV+KLG   D YV N
Sbjct: 105 PREAVAVFSAMPHR-----DSFTYSFLIKALSSAGVAPL-RAVHSHVVKLGSIEDTYVGN 158

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           A+I  +   G    A  VF+E   R++VSWNS +   VR G    A R+F +M    +E 
Sbjct: 159 ALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEM----LEK 214

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D V+                     W              N L+D Y K G +E A ++F
Sbjct: 215 DTVS---------------------W--------------NTLLDGYTKAGDVEEAFKLF 239

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M  + VVS +T++ GY K G +++AR IFD +P K +V W  ++    Q    +EA  
Sbjct: 240 QCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGK 299

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF +M+   ++ D    V  L+AC++ G+L  G  IHR++       +  +  AL+DM+ 
Sbjct: 300 LFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFC 359

Query: 359 KCGNIAKALQVFH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           KCG I +A  VF  E+ E++S+++  IIGG A+HG    A+ +F++M   G  PD +T +
Sbjct: 360 KCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMI 419

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +LSAC H G V+EGR+YFA M   + + P+++HY CM+DLLGR GL++EA  LI+SMP 
Sbjct: 420 NVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 479

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
             + V+WG+L  ACRLH NV   E A  +L +L P ++G Y +L+++Y ++  W +  K 
Sbjct: 480 DPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKA 539

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           R  M+  G +K+ G S IE++   +EF V D+ HP+ +QI + + +L+ H
Sbjct: 540 RMQMKGTGSQKSSGSSWIELDEAFHEFTVGDRKHPDSDQISEMVDRLSSH 589


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 296/533 (55%), Gaps = 40/533 (7%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV--FVSCGDLGLAC 134
           P       L++ C ++G      +I   ++  GF+ +      +I+       G +  A 
Sbjct: 11  PSRQQRSQLWRSCTTIGTL---KQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAH 67

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            +F      +   WN++I G  +S  P  AI L+  M+   V PD+ T   ++ AC +L 
Sbjct: 68  QLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLC 127

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCG------------------------- 229
            + +G  +H  +   G      + N L+  +  CG                         
Sbjct: 128 WVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTA 187

Query: 230 ------KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
                 +L  A ++FD M  K +VS   MI GYAK G ++ ARK+FD++P++ VV WNA+
Sbjct: 188 GYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAM 247

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I GYV    +++AL +F EM++ G  PD VT +  LSAC+ LG LD G  IH  I +  F
Sbjct: 248 IAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGF 307

Query: 344 -NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            +L+V+LG AL+DMYAKCG+I +AL+VF  M E++  T+ +++GGLA HG A  +I  F+
Sbjct: 308 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 367

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM  + + PDEITF+G+L AC H G V+EGR+YF  M   + + P ++HY CMVDLLGR+
Sbjct: 368 EMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRA 427

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           GLL EA   I +M +  + +VW  L  ACR+HGNV +G RA M+LL++   +SG YVLL+
Sbjct: 428 GLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLS 487

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE-VNGLLYEFIVRDKSHPEL 574
           N+Y     W+   KVRK+M++ GV K  GCS IE  N  L  F+    S P+L
Sbjct: 488 NIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLF--DSKPKL 538



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 208/457 (45%), Gaps = 97/457 (21%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M + G  S+  A   LI   +I+ S  + Y  ++  ++  P++F WN  IRG  ++    
Sbjct: 36  MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 95

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ LY QM  NG  RPD FT+P + K C  L    +G+ + G V +LGF+ + +V N +
Sbjct: 96  NAISLYSQM-ENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTL 154

Query: 121 IHVFVSCGD-------------------------------LGLACNVFDESCVRNLVSWN 149
           I+   +CGD                               LG+A  +FDE  V++LVSWN
Sbjct: 155 IYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWN 214

Query: 150 SLINGFVRSGFPREAIRLF-----RDM------------------QLERVE--------P 178
            +I G+ + G    A +LF     RD+                   LE  E        P
Sbjct: 215 VMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELP 274

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLT-LTVPLANALMDMYVKCGKLESAEEI 237
           DEVTM+ ++SAC  L DL+ G+ IH  ISE G   L+V L NAL+DMY KCG +  A E+
Sbjct: 275 DEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 334

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  M                                EK V  WN+++GG      +++++
Sbjct: 335 FQGM-------------------------------REKDVSTWNSVLGGLAFHGHAEKSI 363

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDM 356
            LF EM+   I+PD +T V  L ACS  G +++G      +  E N   N+     +VD+
Sbjct: 364 HLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDL 423

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
             + G + +A      M  E N++ +  ++G   +HG
Sbjct: 424 LGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHG 460



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 71/374 (18%)

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI------VGYAKFGFLDI 264
           LT   P       ++  C  + + ++I  SM+ K   S T+ +         A  G +  
Sbjct: 6   LTDKSPSRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAY 65

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           A ++F  + E     WN +I G  Q+     A++L+ +M+   ++PD  T    L AC++
Sbjct: 66  AHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTR 125

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN--IAKAL--------------- 367
           L  +  G  +H  + +  F  N  +   L+  +A CG+  +A+AL               
Sbjct: 126 LCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSAL 185

Query: 368 --------------QVFHEMP-------------------------------ERNSLTYT 382
                         Q+F EMP                               +R+ +T+ 
Sbjct: 186 TAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWN 245

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I G  L G    A+  F EM  VG +PDE+T L +LSAC   G +D G++    +S +
Sbjct: 246 AMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEM 305

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV--SIG 500
                 +   + ++D+  + G +  A ++ + M    DV  W ++      HG+   SI 
Sbjct: 306 GFRDLSVLLGNALIDMYAKCGSIVRALEVFQGM-REKDVSTWNSVLGGLAFHGHAEKSIH 364

Query: 501 ERAAMKLLELDPQD 514
               M+ L++ P +
Sbjct: 365 LFTEMRKLKIRPDE 378


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/626 (32%), Positives = 320/626 (51%), Gaps = 79/626 (12%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSF---SWNVAIRGFLETGKMR 60
           +GL+   F  S+L+ F +     +L++  +    V+  N F   SWN+ I  +++     
Sbjct: 108 SGLVEDSFLVSKLVMFYS-----SLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYE 162

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+  YKQM+ + G RPDNFT+P + K C        G E+   +        ++VHNA+
Sbjct: 163 AAILAYKQMV-SKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNAL 221

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP-- 178
           I ++  CG++  A N+FD    R+ VSWNS+I+ +   G  REA  LF  MQ + +E   
Sbjct: 222 ISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINV 281

Query: 179 ---------------------------------DEVTMIGMVSACAQLEDLNLGREIHWY 205
                                            D+V MI  + AC+ +  + LG+EIH +
Sbjct: 282 VTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGF 341

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
                  +   + NAL+ MY +C  +  A  +F                           
Sbjct: 342 TIRHYHHMLSTVQNALVTMYARCKDIRHAYMLF--------------------------- 374

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
            ++ DD   K  + WN+++ G     R +EAL LF E+   G++PD VT    L  C+++
Sbjct: 375 -RLNDD---KSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARV 430

Query: 326 GALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
             L  G   H +I K  +F  +++L  ALVDMYA+ G +++A ++F+ + +++ +TYT++
Sbjct: 431 ADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSL 490

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G  + G+   A+  F EM    + PD IT + +LSAC H GLV++    FA+M S+  
Sbjct: 491 IAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHG 550

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           LSP+L+HY+CM DL GR GLL +A+++I  MP      +W  L  AC +HGN+ IGE AA
Sbjct: 551 LSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAA 610

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            KLLE+ P+ SG YVL+ANMY  +  W +  ++R +M + GV K PGCS ++V      F
Sbjct: 611 EKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDVGSEFISF 670

Query: 565 IVRDKSHP---ELEQIYDCLVQLTRH 587
            V D S P   E + + D L  + +H
Sbjct: 671 SVGDTSSPQALESKLLLDSLYDVMKH 696



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 255/528 (48%), Gaps = 19/528 (3%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNV-----AIRGFLETGKMREAVDL 65
           F+PS+ I    +S SK   +  K   N+   NS  + +     +++ F   G++ ++ + 
Sbjct: 3   FSPSQCI-LKGLSISKLETFIPKSWKNLPVSNSSEFMIGSIFSSLKDFASHGQLSKSFEA 61

Query: 66  YKQMLRNGGTRPDNF-----TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +  +++   +  D+F     +  +L   C        G ++ GH++  G   D ++ + +
Sbjct: 62  F-SLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKL 120

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           +  + S   L  A  + + S +    SWN LI  +V+      AI  ++ M  + V PD 
Sbjct: 121 VMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDN 180

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T   ++ AC + ++L  G E+H  I+      ++ + NAL+ MY +CG++++A  +FD+
Sbjct: 181 FTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDN 240

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK----YVVPWNAIIGGYVQAKRSKEA 296
           M+ +  VS  +MI  Y+  G    A ++F+ +  K     VV WN I GG ++     +A
Sbjct: 241 MLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQA 300

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L L  +M+  GI  D V  +  L ACS +GA+  G  IH F  +   ++   +  ALV M
Sbjct: 301 LKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTM 360

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           YA+C +I  A  +F    +++ +T+ +++ GL   G+  +A+  F E++  G+ PD +TF
Sbjct: 361 YARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTF 420

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             IL  C     +  GR++   ++        L  ++ +VD+  R+G + EA+++  S+ 
Sbjct: 421 ASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLS 480

Query: 477 MAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQDSGIYVLLA 522
              D V + +L     + G      R    MK  ++ P    +  +L+
Sbjct: 481 -KKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLS 527


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 326/569 (57%), Gaps = 11/569 (1%)

Query: 15  RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML-RNG 73
           +LI  C    S +L     +   +  P+  +W + I G  + G  ++A+D+Y  +L RN 
Sbjct: 16  KLIKTCL--NSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRN- 72

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
             RPD F    + K CA+ G   +  +I    ++ GF+ D+ + NA+I +F  C  +  A
Sbjct: 73  -VRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGA 131

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
             VFD+  V+++VSW S+   +V  G  R+ I LFR+M L  +  + +T+  ++ ACA  
Sbjct: 132 RCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY 191

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             + LGRE+H +I  + +   V +++AL++MY     L+ A  +FDSM ++ +VS   M+
Sbjct: 192 --IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVML 249

Query: 254 VGYAKFGFLDIARKIFDDLPEKYV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
             Y      +    +F  + ++ +      WNA I G +Q  + + AL +  +MQ +GIK
Sbjct: 250 TAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIK 309

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+ +T V  L  C+ L +L  G  IH ++ +  F  +V + TALV +YAKCG++  +  V
Sbjct: 310 PNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHV 369

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F+ MP ++ + +  +I   ++HGK  +++  F++M+  G+ P+ +TF+G+LS C H  L 
Sbjct: 370 FNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLA 429

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           DEG   F  MSS   ++P   HYSCMVD+L R+G LEEA   IR MP+      WGAL  
Sbjct: 430 DEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLG 489

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR++ NV +G  AA +L E++P ++G YVLL+N+   +  W EA ++RKMM ++G+ KT
Sbjct: 490 ACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKT 549

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           PG S ++V   +Y F+  DKS+ + + IY
Sbjct: 550 PGRSWVQVKNKVYSFVTGDKSNEQKDMIY 578



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           + K   NL       L+      G++ +AL +F ++PE +  T+T +I G   HG    A
Sbjct: 2   VSKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKA 61

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           I  +S ++   + PD+   L +  AC   G +   +K        F  +  L   + ++D
Sbjct: 62  IDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQ-FGFNKDLVLGNALID 120

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           + G+   +  A  +   M +  DVV W ++ +
Sbjct: 121 MFGKCKFVNGARCVFDDM-VVKDVVSWTSMTY 151


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 290/500 (58%), Gaps = 12/500 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   ++  GF    ++   ++  +++ G+L  A  VF+     +   WN +I G  +S 
Sbjct: 36  QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSE 95

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P + + L+  M     EP+E T   ++  CA+   L  G ++H  +  +G    V +  
Sbjct: 96  TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRT 155

Query: 220 ALMDMYVKCGK---LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           +L+++Y   G    +  A  +FD +V++ +VS  +++ GY + G +D AR+IFD++PE+ 
Sbjct: 156 SLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERN 215

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV W  +I G  Q  R K+AL LFHEM+  G+K D V  V  LSAC++LG L  G WIH 
Sbjct: 216 VVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS 275

Query: 337 FIEKE----NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           +I++     N  L V L  +L+ MYA CG I KA +VF  M +R+++++T++I G A  G
Sbjct: 276 YIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 335

Query: 393 KALDAISYFSEMIGVGL---MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            A +A+  F  M  +G     PD ITF+G+L AC H G VD+GR +F  M+  + + P++
Sbjct: 336 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 395

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL-L 508
           +HY CMVDLL R+G L+EA +LI SMPM  +  VWGAL   CR+H N  +    A KL L
Sbjct: 396 EHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLAL 455

Query: 509 ELDP-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           EL P Q +G  VLL+N+Y  +  W++   VR+ M E GV K  G S +++NG++++F+  
Sbjct: 456 ELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAG 515

Query: 568 DKSHPELEQIYDCLVQLTRH 587
           D +H     +Y+ L ++TR 
Sbjct: 516 DWTHKHASSVYEMLSKITRQ 535



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 218/468 (46%), Gaps = 86/468 (18%)

Query: 4   TGLISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           T +I +GF+    +    +S    S NL    K+   ++NP++  WN  IRG  ++    
Sbjct: 39  TQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPH 98

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + V+LY +M+      P+ FTY  L   CA   L   G ++ G V+  G+  +++V  ++
Sbjct: 99  KLVELYNRMV-EAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSL 157

Query: 121 IHV----------------------------------FVSCGDLGLACNVFDESCVRNLV 146
           +++                                  +V CGD+  A  +FDE   RN+V
Sbjct: 158 VNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVV 217

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW ++I G  + G  ++A+ LF +M+   V+ D+V ++  +SACA+L DL LG  IH YI
Sbjct: 218 SWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYI 277

Query: 207 SE----SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
            E        L V L N+L+ MY  CG ++ A ++F  M  ++ +S T+MI G+AK G  
Sbjct: 278 DERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG-- 335

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI---KPDAVTTVHCL 319
                                         ++EAL +F  MQ  G    +PD +T +  L
Sbjct: 336 -----------------------------HAEEALGVFQWMQRLGTDEGRPDGITFIGVL 366

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPE 375
            ACS  G +D G     F E  N    +V        +VD+ ++ G + +A ++   MP 
Sbjct: 367 CACSHAGFVDQG---RHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPM 423

Query: 376 R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT-FLGILS 421
           + N   + A++GG  +H  A +  S+ ++ + + L PD+   +L +LS
Sbjct: 424 KPNDAVWGALLGGCRIHKNA-ELASHVAQKLALELKPDQAAGYLVLLS 470



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 124/269 (46%), Gaps = 16/269 (5%)

Query: 171 MQLERVEPDEVT--------MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           M +E   P  +T           ++  C  ++ L   ++IH  I  +G +    L   L+
Sbjct: 1   MLVEEASPANLTGLRALQQHFFSLLQTCDTIKKL---KQIHTQIIVNGFSQKNFLLVKLL 57

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK----FGFLDIARKIFDDLPEKYVV 278
             Y+  G L +A ++F+ + N +      MI G+++       +++  ++ +   E    
Sbjct: 58  SFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEF 117

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            ++ +IGG  +++  +E   +   + A G   +       ++  +  G   DG+   R +
Sbjct: 118 TYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGY-DGVRKARRV 176

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
             E  + N+V   +L+  Y +CG++  A ++F EMPERN +++T +I G A  G+   A+
Sbjct: 177 FDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQAL 236

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGG 427
             F EM   G+  D++  +  LSAC   G
Sbjct: 237 HLFHEMRRAGVKLDQVALVAALSACAELG 265


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 292/533 (54%), Gaps = 32/533 (6%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           +++ +L+   K+   +   N  SW   + G L+ G   E + L+ +M R     P  +T 
Sbjct: 168 AKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEM-REERVLPSEYTM 226

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C  LG    G  + G V+K G   + ++  AV+ ++V CG++  A  +FDE   
Sbjct: 227 ASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGF 286

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +LV W ++I G+ ++G P +A+ LF D +   + P+ VT+  ++SA AQL +L+LGR I
Sbjct: 287 VDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLI 346

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    +  +     + NAL+DMY KC  L  A  IF  + N                   
Sbjct: 347 HAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISN------------------- 387

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                       K VV WN++I GYV+     EAL LF +M+  G  PDA++ V+ LSAC
Sbjct: 388 ------------KDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSAC 435

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             LG L  G   H +  K  F  NV + TAL+++Y KC ++  A +VF EM ERNS+T+ 
Sbjct: 436 VCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWG 495

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+IGG  + G +  +I   ++M+   + P+E+ F  ILS C H G+V  G+  F  M+  
Sbjct: 496 AMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQY 555

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F ++P +KHY+CMVD+L R+G LEEA + I+ MPM AD+ +WGA    C+LH  +  GE 
Sbjct: 556 FNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEE 615

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           A  +++ L P     YVL++N+Y     W+++  +R++M+ERG+ K PGCSS+
Sbjct: 616 AINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGLVKLPGCSSV 668



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 240/500 (48%), Gaps = 48/500 (9%)

Query: 6   LISHGF-----APSRLIA-FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           L++HG      A ++L++ + A+ +   L    ++L     P+ +++ VA+      G+ 
Sbjct: 46  LLAHGLLRALRARTKLLSCYAALGD---LASARRVLDETPRPDPYTYRVALGWHAAAGRH 102

Query: 60  REAVDLYKQMLRNGGTRPDNFTY-PLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMYVH 117
            +A+ L++ M R      D+     L  K    S   R+ G  +  + +K G   D +V 
Sbjct: 103 ADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRY-GRRLHCNAVKAG-GADGFVM 160

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N ++ ++   GDL  A  VFD    RN+VSW S+++G +++GF  E + LF +M+ ERV 
Sbjct: 161 NCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVL 220

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P E TM  ++ AC  L  L+ GR +H  + + G+     +  A++DMYVKCG++E A  +
Sbjct: 221 PSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRL 280

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD                  + GF+D+             V W  +I GY Q     +AL
Sbjct: 281 FD------------------ELGFVDL-------------VLWTTMIVGYTQNGSPLDAL 309

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF + +   I P++VT    LSA +QL  L  G  IH    K     N V+  ALVDMY
Sbjct: 310 LLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMY 369

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AKC  +++A  +F  +  ++ +T+ ++I G   +    +A+  FS+M   G  PD I+ +
Sbjct: 370 AKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIV 429

Query: 418 GILSAC-CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             LSAC C G L+    K F   +        +   + +++L  +   L  A+++   M 
Sbjct: 430 NALSACVCLGDLLIG--KCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMS 487

Query: 477 MAADVVVWGALFFACRLHGN 496
              + V WGA+     + G+
Sbjct: 488 -ERNSVTWGAMIGGYGMQGD 506


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 209/626 (33%), Positives = 322/626 (51%), Gaps = 80/626 (12%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +TG +S+ F  + L+A    S   +L    K+   +   +  SWN  I  + + GK + A
Sbjct: 155 VTGFMSNVFVGNALVAM--YSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMA 212

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           ++++ +M    G RPD+ T   +   CAS+G R LG +  G  +      +M+V N ++ 
Sbjct: 213 LEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVD 272

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE----- 177
           ++   G +  A  VF    V+++VSWN+++ G+ + G   +A+RLF  MQ E+++     
Sbjct: 273 MYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT 332

Query: 178 ------------------------------PDEVTMIGMVSACAQLEDLNLGREIHWY-- 205
                                         P+EVT+I ++S CA +  L  G+EIH Y  
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 206 -----ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
                + ++G      + N L+DMY KC K+                             
Sbjct: 393 KYPMDLRKNGHGDENMVINQLIDMYAKCKKV----------------------------- 423

Query: 261 FLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTV 316
             DIAR +FD L   E+ VV W  +IGGY Q   + +AL L  EM  +    +P+A T  
Sbjct: 424 --DIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
             L AC+ L AL  G  IH +  +   N + + +   L+DMYAKCG+I  A  VF  M E
Sbjct: 482 CALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMME 541

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           +N +T+T+++ G  +HG   +A+  F EM  +G   D +T L +L AC H G++D+G +Y
Sbjct: 542 KNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F +M + F +SP  +HY+C+VDLLGR+G L  A +LI  MPM    VVW AL   CR+HG
Sbjct: 602 FNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHG 661

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
            V +GE AA K+ EL   + G Y LL+NMY ++  W++  ++R +M  +G++K PGCS +
Sbjct: 662 KVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWV 721

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCL 581
           E       F V DK+HP  ++IY  L
Sbjct: 722 EGIKGTTTFFVGDKTHPHAKEIYQVL 747



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 241/477 (50%), Gaps = 20/477 (4%)

Query: 36  FNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR 95
           F   +   + WN  IR +   G+  + +  +  M     T PDN+T+P +FK C  +   
Sbjct: 85  FPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT-PDNYTFPFVFKACGEISSV 143

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
             G          GF  +++V NA++ ++  CG L  A  VFDE  V ++VSWNS+I  +
Sbjct: 144 RCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESY 203

Query: 156 VRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
            + G P+ A+ +F  M  E    PD++T++ ++  CA +   +LG++ H +   S +   
Sbjct: 204 AKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQN 263

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N L+DMY K G ++ A  +F +M  K VVS   M+ GY++ G  + A ++F+ + E
Sbjct: 264 MFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQE 323

Query: 275 KY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
           +     VV W+A I GY Q     EAL +  +M ++GIKP+ VT +  LS C+ +GAL  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 331 GIWIHRFIEKENFNL--------NVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLT 380
           G  IH +  K   +L        N+V+   L+DMYAKC  +  A  +F  +   ER+ +T
Sbjct: 384 GKEIHCYAIKYPMDLRKNGHGDENMVI-NQLIDMYAKCKKVDIARAMFDSLSPKERDVVT 442

Query: 381 YTAIIGGLALHGKALDAISYFSEMI--GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +T +IGG + HG A  A+   SEM        P+  T    L AC     +  G++  A 
Sbjct: 443 WTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAY 502

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
                + +  L   +C++D+  + G + +A  +  +M M  + V W +L     +HG
Sbjct: 503 ALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHG 558



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 163/408 (39%), Gaps = 72/408 (17%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNSLI  +  +G   + +  F  M      PD  T   +  AC ++  +  G   H    
Sbjct: 95  WNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSR 154

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
            +G    V + NAL+ MY +CG L  A ++FD M    VVS  ++I  YAK G   +A +
Sbjct: 155 VTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALE 214

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F  +  ++                              G +PD +T V+ L  C+ +G 
Sbjct: 215 MFSKMTNEF------------------------------GFRPDDITLVNVLPPCASVGT 244

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
              G   H F        N+ +G  LVDMYAK G + +A  VF  MP ++ +++ A++ G
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 388 LALHGKALDAISYFSEM----------------------------IGV-------GLMPD 412
            +  G+  DA+  F +M                            +GV       G+ P+
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH------YSCMVDLLGRSGLLE 466
           E+T + +LS C   G +  G++             K  H       + ++D+  +   ++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 467 EAEQLIRSM-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
            A  +  S+ P   DVV W  +      HG+ +       ++ E D Q
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 19/289 (6%)

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS---CTTMIVGYAKFGFLD 263
           S S L +T P  +       KC  +   + I   +++  +++    + +I  Y   G L 
Sbjct: 24  STSALEITPPFIH-------KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLS 76

Query: 264 IARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            A  +    P  +  V  WN++I  Y    R+ + L+ F  M +    PD  T      A
Sbjct: 77  HAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKA 136

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C ++ ++  G   H       F  NV +G ALV MY++CG+++ A +VF EMP  + +++
Sbjct: 137 CGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSW 196

Query: 382 TAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLVDEGRKY--FAQ 438
            +II   A  GK   A+  FS+M    G  PD+IT + +L  C   G    G+++  FA 
Sbjct: 197 NSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAV 256

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            S + +    +   +C+VD+  + G+++EA  +  +MP+  DVV W A+
Sbjct: 257 TSEMIQ---NMFVGNCLVDMYAKFGMMDEANTVFSNMPV-KDVVSWNAM 301


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/431 (39%), Positives = 258/431 (59%), Gaps = 1/431 (0%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN +I G   S  P  ++ L+  M       +  T   ++ AC+ L       +IH +I+
Sbjct: 78  WNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHIT 137

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G    +   N+L++ Y   G  + A  +FD +     VS  ++I GY K G +D+A  
Sbjct: 138 KFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALT 197

Query: 268 IFDDLPEKY-VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           +F  +PEK   + W  +I GYVQA  +KEAL LFHEMQ + + PD V+    LSACSQLG
Sbjct: 198 LFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLG 257

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           AL+ G WIH +  K    ++ VL   L+DMYAKCG + +AL VF  M  ++   +TA+I 
Sbjct: 258 ALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALIS 317

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A HG   +AIS F EM  +G+ P+ ITF  +L+AC + GLV+EG+  F  +   + L 
Sbjct: 318 GYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLK 377

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P ++HY CMVDLLGR+GLL EA + I+ MP+  + V+WG+L  AC++H N+ +GE+    
Sbjct: 378 PTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEI 437

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L+E+D    G YV +AN++     W++A + R++M E+GV K PGCS+I + G  +EF+ 
Sbjct: 438 LIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLA 497

Query: 567 RDKSHPELEQI 577
            D+SH E+++I
Sbjct: 498 GDRSHAEIQEI 508



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 189/398 (47%), Gaps = 69/398 (17%)

Query: 30  YCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN-FTYPLLFK 87
           Y   + FN    P++F WN+ IRG   + +   ++ LY +ML    + P N +T+P L K
Sbjct: 61  YAHDVFFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRML--CCSAPHNAYTFPFLLK 118

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C++L       +I  H+ K G+  D+Y  N++I+ +   G+   A  +FD     + VS
Sbjct: 119 ACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVS 178

Query: 148 WNSLINGFVR--------------------------------SGFPREAIRLFRDMQLER 175
           WNS+I G+V+                                +G  +EA++LF +MQ   
Sbjct: 179 WNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSN 238

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V PD V++   +SAC+QL  L  G+ IH Y +++   +   L   L+DMY KCG++E A 
Sbjct: 239 VPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEAL 298

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +F +M  K+V   T +I GYA  G                                 +E
Sbjct: 299 GVFKNMKTKSVQVWTALISGYAYHGL-------------------------------GRE 327

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALV 354
           A++ F EMQ  G+KP+A+T    L+ACS  G +++G  +   IE++ N    +     +V
Sbjct: 328 AISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMV 387

Query: 355 DMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           D+  + G + +A +   +MP + N++ + +++    +H
Sbjct: 388 DLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIH 425


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 178/450 (39%), Positives = 267/450 (59%), Gaps = 2/450 (0%)

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGMV 187
           L  A  + D S    L + NS+I    +S  P ++   +  +      ++PD  T+  +V
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLV 123

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC  L     G ++H      G      +   L+ +Y + G L+S  ++F+S+     V
Sbjct: 124 QACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFV 183

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
             T M+   A+ G +  ARK+F+ +PEK  + WNA+I GY Q   S+EAL LFH MQ  G
Sbjct: 184 CRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEG 243

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +K + V+ +  LSAC+QLGALD G W H +IE+    + V LGT LVD+YAKCG++ KA+
Sbjct: 244 VKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAM 303

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF  M E+N  T+++ + GLA++G     +  FS M   G+ P+ +TF+ +L  C   G
Sbjct: 304 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVG 363

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            VDEG+K+F  M + F + P+L HY C+VDL  R+G LE+A  +I+ MPM A   VW +L
Sbjct: 364 FVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSL 423

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             A R++ N+ +G  A+ K+LEL+  + G YVLL+N+Y DS+ W+    VR+ M+ +GV 
Sbjct: 424 LHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVR 483

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           K PGCS +EVNG ++EF V DKSHP+  +I
Sbjct: 484 KQPGCSVMEVNGEVHEFFVGDKSHPKYNEI 513



 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/409 (38%), Positives = 237/409 (57%), Gaps = 31/409 (7%)

Query: 178  PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            P+EVT + M+SAC    +   G  IH  + +SG+   V + NALM++Y K G L      
Sbjct: 635  PNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDL------ 688

Query: 238  FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
                    + SC                 K+F+DL  K +V WN +I  ++Q   ++E L
Sbjct: 689  --------ISSC-----------------KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGL 723

Query: 298  ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            A F+  +  G+KPD  T +  L  C  +G +     IH  I    FN N  + TAL+D+Y
Sbjct: 724  AYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLY 783

Query: 358  AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
            AK G +  +  VF E+   +S+ +TA++   A HG   DAI +F  M+  GL PD +TF 
Sbjct: 784  AKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFT 843

Query: 418  GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
             +L+AC H GLV+EGR YF  MS  +R+ P+L HYSCMVDL+GRSGLL++A  LI+ MPM
Sbjct: 844  HLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPM 903

Query: 478  AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
                 VWGAL  ACR++ +  +G +AA +L EL+P+D   Y++L+N+Y  S +W++A ++
Sbjct: 904  EPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRI 963

Query: 538  RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            R +M+++G+ +  G S IE    +++F+V D SHPE E+I   L ++ +
Sbjct: 964  RNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRK 1012



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 191/408 (46%), Gaps = 66/408 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + G +       + +   A+S+   LDY  +IL     P  F+ N  IR   ++    
Sbjct: 37  LYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPE 96

Query: 61  EAVDLYKQMLRNG-GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           ++ D Y ++L +G G +PDN+T   L + C  LG+R  G ++ G  ++ GFD D +V   
Sbjct: 97  KSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTG 156

Query: 120 VIHVFVS-------------------------------CGDLGLACNVFDESCVRNLVSW 148
           +I ++                                 CGD+  A  +F+    ++ ++W
Sbjct: 157 LISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAW 216

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+ + G  REA+ LF  MQLE V+ + V+MI ++SAC QL  L+ GR  H YI  
Sbjct: 217 NAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIER 276

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + + +TV L   L+D+Y KCG ++ A E+F  M  K V + ++ + G A  GF       
Sbjct: 277 NKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGF------- 329

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                    ++ L LF  M+  G+ P+AVT V  L  CS +G +
Sbjct: 330 ------------------------GEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFV 365

Query: 329 DDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP 374
           D+G   H    +  F +   L     LVD+YA+ G +  A+ +  +MP
Sbjct: 366 DEG-QKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMP 412



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 39/353 (11%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V++ N F      RG+L  GK  E   L + M    G RP+  T+  +   C   G +  
Sbjct: 600 VRDRNRFHHFKDGRGYL--GKCFEV--LSRMMRSEVGFRPNEVTFLSMISACVHGGNKEE 655

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  I G V+K G   ++ V NA+++++   GDL  +C +F++  V+NLVSWN++I   ++
Sbjct: 656 GVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQ 715

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +G   E +  F   +   ++PD+ T + ++  C  +  + L + IH  I   G      +
Sbjct: 716 NGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCI 775

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
             AL+D+Y K G+LE +  +F  + +   ++ T M+  YA  G+                
Sbjct: 776 TTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGY---------------- 819

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
                           ++A+  F  M   G+ PD VT  H L+ACS  G +++G +    
Sbjct: 820 ---------------GRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFET 864

Query: 338 IEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
           + K  + +   L   + +VD+  + G +  A  +  EMP E +S  + A++G 
Sbjct: 865 MSKR-YRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGA 916



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 15  RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG 74
           R     A +   ++ +  K+   +   +  +WN  I G+ + G+ REA++L+  +++  G
Sbjct: 185 RTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLF-HLMQLEG 243

Query: 75  TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
            + +  +   +   C  LG    G     ++ +    + + +   ++ ++  CGD+  A 
Sbjct: 244 VKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAM 303

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
            VF     +N+ +W+S +NG   +GF  + ++LF  M+ + V P+ VT + ++  C+ + 
Sbjct: 304 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVG 363

Query: 195 DLNLG-REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
            ++ G +      +E G+   +     L+D+Y + G+LE A  I   M  K 
Sbjct: 364 FVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKA 415



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G +P+ VT +  +SAC   G  ++G+ IH  + K      V +  AL+++Y K G++  +
Sbjct: 632 GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            ++F ++  +N +++  +I     +G A + ++YF+    VGL PD+ TFL +L  C   
Sbjct: 692 CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 751

Query: 427 GLVDEGRKYFAQ-MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
           G+V   +      M   F  +  +   + ++DL  + G LE++  +   +  + D + W 
Sbjct: 752 GVVRLSQGIHGLIMFCGFNANTCIT--TALLDLYAKLGRLEDSSTVFLEIT-SPDSMAWT 808

Query: 486 ALFFACRLHGNVSIGERAAMKLLEL 510
           A+  A   HG      R A+K  EL
Sbjct: 809 AMLAAYATHGY----GRDAIKHFEL 829



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+  ++   N  SWN  I   L+ G   E +  Y  M R  G +PD  T+  + +VC  +
Sbjct: 693 KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGL-AYFNMSRWVGLKPDQATFLAVLRVCEDI 751

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G+  L   I G ++  GF+ +  +  A++ ++   G L  +  VF E    + ++W +++
Sbjct: 752 GVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAML 811

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +   G+ R+AI+ F  M    + PD VT   +++AC+    +  GR
Sbjct: 812 AAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGR 859



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 23/93 (24%)

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
           VG  P+E+TFL ++SAC HGG  +EG                     C+  L+ +SG+LE
Sbjct: 631 VGFRPNEVTFLSMISACVHGGNKEEG--------------------VCIHGLVMKSGVLE 670

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
           E + +   M +       G L  +C+L  ++S+
Sbjct: 671 EVKVVNALMNLYGKT---GDLISSCKLFEDLSV 700


>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 531

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 178/475 (37%), Positives = 286/475 (60%), Gaps = 8/475 (1%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
           ++  A++  + + G  G A ++FDE   ++LV+  ++      SG   +A+ LF+DM  +
Sbjct: 47  HLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIAD 106

Query: 175 RVEPDEVTMIGMVSAC----AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
              PD V +  +++AC    +     + GR +H +I   G+   V ++  L+ +Y + G+
Sbjct: 107 GFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGE 166

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +  A  +FDSM  K+ ++  TM+  Y +   ++ A ++F  +P + VV WN +I GY   
Sbjct: 167 MTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLV 226

Query: 291 KRSKEALALFHEM---QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
            R KEAL LF +M    +  + P+  T    LSAC+  G L+ GIW+H +I+K   N N 
Sbjct: 227 GRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNG 286

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            L   L+DMYAKCG+I KALQVF + P +R+  ++T +I GLA+HG+A D +  FS M  
Sbjct: 287 TLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQD 346

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
            G+ PD++TF+G+L+AC HGGLVDEG  +F  M   +R++PK++HY CM+DLLGR G L 
Sbjct: 347 SGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLP 406

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526
           EA ++I++MPM  ++V+WGA   AC++H +V +GE AA ++  LDP D    V++++MY 
Sbjct: 407 EAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMYA 466

Query: 527 DSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
            +  W    + R+ M    ++KTPGCSS+ ++G ++EF+     HP   +I   L
Sbjct: 467 KAQDWSGLARERREMNSLQMKKTPGCSSVALDGEVHEFVAGGNQHPLCAEICSVL 521



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 165/383 (43%), Gaps = 75/383 (19%)

Query: 51  RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG----LRFLGYEIFGHVL 106
           R    +G+  +A+DL++ M+ +G   PDN    ++   C   G     R  G  +   ++
Sbjct: 85  RAHAVSGQAAQALDLFQDMIADG-FMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIV 143

Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS-------- 158
             G + D++V   +I V+   G++ +A  VFD    ++ ++WN++++ +VR+        
Sbjct: 144 ACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYR 203

Query: 159 ---GFPR--------------------EAIRLFRDMQLER---VEPDEVTMIGMVSACAQ 192
                PR                    EA+ LFR M       V P+  TM  ++SACA 
Sbjct: 204 LFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAG 263

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
              L  G  +H YI ++ +     L   L+DMY KCG ++ A ++F+    K        
Sbjct: 264 AGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGK-------- 315

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
                        R ++          W  +I G     R+ + L +F  MQ +G+ PD 
Sbjct: 316 -------------RDLYS---------WTTVICGLAMHGRANDVLRMFSMMQDSGMCPDD 353

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFI---EKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           VT V  L+AC+  G +D+G  +H F    EK      +     ++D+  + G + +A ++
Sbjct: 354 VTFVGVLNACAHGGLVDEG--LHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRM 411

Query: 370 FHEMPER-NSLTYTAIIGGLALH 391
              MP + N + + A +    +H
Sbjct: 412 IQTMPMKPNMVIWGAFLSACKVH 434



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG--TRPDNFT 81
            +K+++   ++   +   +  SWN  I G+   G+ +EA+ L++QM+        P+  T
Sbjct: 194 RNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPT 253

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              +   CA  G    G  +  ++ K   + +  +   +I ++  CG +  A  VF+++ 
Sbjct: 254 MSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAP 313

Query: 142 -VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R+L SW ++I G    G   + +R+F  MQ   + PD+VT +G+++ACA    ++ G 
Sbjct: 314 GKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGL 373

Query: 201 EIHWYISESGLTLTVPLAN--ALMDMYVKCGKLESAEEIFDSMVNK 244
             H+Y  +    +T  + +   ++D+  + G+L  A  +  +M  K
Sbjct: 374 H-HFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMK 418


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/451 (40%), Positives = 275/451 (60%), Gaps = 10/451 (2%)

Query: 148 WNSLINGFVR---SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           WN +I   V    S      I ++  M+  RV PD  T   ++ +      L LG+  H 
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            I   GL     +  +L++MY  CG L SA+ +FD   +K + +  +++  YAK G +D 
Sbjct: 87  QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-----IKPDAVTTVHCL 319
           ARK+FD++PE+ V+ W+ +I GYV   + KEAL LF EMQ        ++P+  T    L
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC +LGAL+ G W+H +I+K +  +++VLGTAL+DMYAKCG++ +A +VF+ +  +  +
Sbjct: 207 SACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDV 266

Query: 380 -TYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFA 437
             Y+A+I  LA++G   +    FSEM     + P+ +TF+GIL AC H GL++EG+ YF 
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFK 326

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M   F ++P ++HY CMVDL GRSGL++EAE  I SMPM  DV++WG+L    R+ G++
Sbjct: 327 MMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDI 386

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
              E A  +L+ELDP +SG YVLL+N+Y  +  W E   +R  ME +G+ K PGCS +EV
Sbjct: 387 KTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEV 446

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            G+++EF+V D+S  E E+IY  L ++ +  
Sbjct: 447 EGVVHEFVVGDESQQESERIYAMLDEIMQRL 477



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 178/393 (45%), Gaps = 75/393 (19%)

Query: 43  SFSWNVAIRGFLE---TGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           SF WN+ IR  +    + +    + +Y +M RN    PD  T+P L     +     LG 
Sbjct: 24  SFLWNIIIRAIVHNVSSPQRHSPISVYLRM-RNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS--------- 150
                +L  G D D +V  ++++++ SCGDL  A  VFD+S  ++L +WNS         
Sbjct: 83  RTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAG 142

Query: 151 ----------------------LINGFVRSGFPREAIRLFRDMQLER-----VEPDEVTM 183
                                 LING+V  G  +EA+ LFR+MQL +     V P+E TM
Sbjct: 143 LIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTM 202

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-V 242
             ++SAC +L  L  G+ +H YI +  + + + L  AL+DMY KCG LE A+ +F+++  
Sbjct: 203 STVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS 262

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K V + + MI   A +G  D                               E   LF E
Sbjct: 263 KKDVKAYSAMICCLAMYGLTD-------------------------------ECFQLFSE 291

Query: 303 MQAT-GIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           M  +  I P++VT V  L AC   G +++G  +    IE+     ++     +VD+Y + 
Sbjct: 292 MTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRS 351

Query: 361 GNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           G I +A      MP E + L + +++ G  + G
Sbjct: 352 GLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 384



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 15/301 (4%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML----RNGGTR 76
           A +++  +D   K+   +   N  SW+  I G++  GK +EA+DL+++M          R
Sbjct: 137 AYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVR 196

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+ FT   +   C  LG    G  +  ++ K   ++D+ +  A+I ++  CG L  A  V
Sbjct: 197 PNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRV 256

Query: 137 FDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSACAQLE 194
           F+     +++ +++++I      G   E  +LF +M   + + P+ VT +G++ AC    
Sbjct: 257 FNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRG 316

Query: 195 DLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTM 252
            +N G+      I E G+T ++     ++D+Y + G ++ AE    SM +   V+   ++
Sbjct: 317 LINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSL 376

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNA-----IIGGYVQAKRSKEALALFHEMQATG 307
           + G    G +         L E  + P N+     +   Y +  R  E   + HEM+  G
Sbjct: 377 LSGSRMLGDIKTCEGALKRLIE--LDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKG 434

Query: 308 I 308
           I
Sbjct: 435 I 435


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 179/447 (40%), Positives = 275/447 (61%), Gaps = 4/447 (0%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPR-EAIRLFRDM-QLERVEPDEVTMIGMVSACAQL 193
           VFD     +L  +N++I     S     ++   FR + + ER+ P++ +       C   
Sbjct: 56  VFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSG 115

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             +  G ++  +  + GL   + + NAL+ MYV    +  A ++FD   N+ + S   M+
Sbjct: 116 VGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIML 175

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GYA+ G +D AR++FD++PEK VV W  +I G +Q     EAL +FH M A G+ P+  
Sbjct: 176 SGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEY 235

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L+AC+ L ALD G W+H +I+K N  +N  L   L+DMYAKCG +  A ++F+  
Sbjct: 236 TLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSN 295

Query: 374 P--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           P  +R    + A+IGG A+HGK+ +AI  F +M    + P+++TF+ +L+AC HG  V+E
Sbjct: 296 PRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEE 355

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           GR YF  M+S +R+ P+L+HY C+VDLLGR+G L+EAE++I SM +  DV +WGAL  AC
Sbjct: 356 GRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSAC 415

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           ++H +  +GER    + ELDP   G +VLLAN+Y  +  W EA  +R+ + E G +KTPG
Sbjct: 416 KIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPG 475

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIY 578
           CSSIE+NG+ ++F+V D+SHP+ +Q+Y
Sbjct: 476 CSSIELNGMFHQFLVGDRSHPQTKQLY 502



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 197/439 (44%), Gaps = 67/439 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGF-LETGKM 59
           +  TGLI H    ++L+   + S    + Y   +  +   P+ F +N  I+     T   
Sbjct: 24  LITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSS 82

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            ++   ++ ++R     P+ +++   FK C S      G ++  H +KLG + +++V NA
Sbjct: 83  ADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNA 142

Query: 120 VIHVFVSC-------------------------------GDLGLACNVFDESCVRNLVSW 148
           +I ++V+                                G +  A  +FDE   +++VSW
Sbjct: 143 LIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSW 202

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
            ++I+G ++ G+  EA+ +F +M  + + P+E T+   ++ACA L  L+ GR +H YI +
Sbjct: 203 TTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKK 262

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + + +   L   L+DMY KCG+LE A ++F+S                       + RK+
Sbjct: 263 NNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPR--------------------LKRKV 302

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           +         PWNA+IGG+    +SKEA+ +F +M+   + P+ VT V  L+ACS    +
Sbjct: 303 W---------PWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRV 353

Query: 329 DDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           ++G  +             +     LVD+  + G + +A ++   M     LT    I G
Sbjct: 354 EEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSM----HLTPDVAIWG 409

Query: 388 LALHGKALDAISYFSEMIG 406
             L    +   +   E +G
Sbjct: 410 ALLSACKIHKDAEMGERVG 428


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 292/487 (59%), Gaps = 10/487 (2%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGD---------LGLACNVFDESCVRNLVSWNSL 151
           I G +L+     D++V + ++ + +   D         LG A  +F +    NL  +N L
Sbjct: 31  IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVL 90

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I  F     P +A   +  M   R+ PD +T   ++ A  ++E + +G + H  I   G 
Sbjct: 91  IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGF 150

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
              V + N+L+ MY  CG + +A  IF  M  + VVS T+M+ GY K G ++ AR++FD+
Sbjct: 151 QNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDE 210

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +P + +  W+ +I GY +    ++A+ LF  M+  G+  +    V  +S+C+ LGAL+ G
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
              H ++ K +  +N++LGTALVDMY +CG I KA++VF E+P+++SL++++II GLA+H
Sbjct: 271 ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVH 330

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G A  AI YFS+M+ +G  P +IT   +LSAC HGGLVD+G + +  M   + + P+L+H
Sbjct: 331 GHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEH 390

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y C+VD+LGR+G L EAE  I  MP+  +  + GAL  AC+++ N  + ER    L+E+ 
Sbjct: 391 YGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVK 450

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV-RDKS 570
           P+ SG YVLL+N+Y  +  WE+   +R +M+E+ V+K PG S IE++G + +F +  D+ 
Sbjct: 451 PEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQK 510

Query: 571 HPELEQI 577
           HPE+ +I
Sbjct: 511 HPEMGKI 517



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 195/429 (45%), Gaps = 74/429 (17%)

Query: 4   TGLISHGFAPSRLIAFCAISESKN-------LDYCTKILFNVQNPNSFSWNVAIRGFLET 56
           T LIS  F  SRL+A     +          L Y   I   +QNPN F +NV IR F   
Sbjct: 38  THLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCFSTG 97

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
            +  +A   Y QML++    PDN T+P L K    +    +G +    +++ GF  D+YV
Sbjct: 98  AEPSKAFGFYTQMLKSR-IWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYV 156

Query: 117 HNAVIHVFVSCGDLGLACNV-------------------------------FDESCVRNL 145
            N+++H++ +CG +  A  +                               FDE   RNL
Sbjct: 157 ENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNL 216

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
            +W+ +ING+ ++    +AI LF  M+ E V  +E  M+ ++S+CA L  L  G   H Y
Sbjct: 217 FTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEY 276

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           + +S +T+ + L  AL+DMY +CG++E A  +F+ +                        
Sbjct: 277 VVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEEL------------------------ 312

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                  P+K  + W++II G      + +A+  F +M   G  P  +T    LSACS  
Sbjct: 313 -------PDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHG 365

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMPER-NSLTYT 382
           G +D G+ I+  + K ++ +   L     +VDM  + G +A+A     +MP + N+    
Sbjct: 366 GLVDKGLEIYENM-KRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILG 424

Query: 383 AIIGGLALH 391
           A++G   ++
Sbjct: 425 ALLGACKIY 433


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 307/554 (55%), Gaps = 36/554 (6%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G  S  F  S L+ +      ++++  +K+   +   +  SW   I    + G   + + 
Sbjct: 151 GFTSDVFVMSGLVNY--YGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLK 208

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           +  +M +  G  P+  T   L   C        G  ++  V K G + D+ + NA+I ++
Sbjct: 209 MLSEM-QAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMY 267

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             CG L  A   F     R   SWN+LI+GFV++   +EA+R+F +M L  V PD +T++
Sbjct: 268 TKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLV 327

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++SACAQL +L  G  +H YI ++G+     L N+L++MY KCG + +AE +F +M  K
Sbjct: 328 SVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKK 387

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VVS T M+ GY K                ++ + +N                 LF EM+
Sbjct: 388 DVVSWTVMVCGYVK--------------GHQFTMAFN-----------------LFEEMK 416

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
              +    +  V  LSACSQLGALD G  IH +IE+ N   ++ L +ALVDMYAKCG I 
Sbjct: 417 IAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCID 476

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSAC 423
            A ++F +M  + +L++ A+IGGLA +G   +A+  F +M+ +    PD IT   +L AC
Sbjct: 477 TASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGAC 536

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H G+VDEG +YF  MSS+  + P  +HY C+VDLLGR+G+L+EA   I+ MP+  + V+
Sbjct: 537 AHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVI 595

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           WG+L  ACR+H  + +G+     ++ + P D G++VL++N++ + + W++   VR +M  
Sbjct: 596 WGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGS 655

Query: 544 RGVEKTPGCSSIEV 557
           RG+EKTPG SS++V
Sbjct: 656 RGIEKTPGHSSVQV 669



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/517 (29%), Positives = 262/517 (50%), Gaps = 39/517 (7%)

Query: 6   LISHGFAPSRLIAFCAISESK-NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           L S  F   RLIA  A   ++ ++ Y  K+   +  PN+F WN  IRG+      R+A+ 
Sbjct: 45  LTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALA 104

Query: 65  LYKQMLRNGGTRPDNFT---YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           ++++M R G   PDN+T           A L  R  G  I   V ++GF  D++V + ++
Sbjct: 105 VFREMRRRG-VSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLV 163

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           + + +   +  A  VF+E   R++VSW S+I+   + G   + +++  +MQ E + P++V
Sbjct: 164 NYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKV 223

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+I ++SAC Q + ++ GR ++  + + G+   V + NAL+ MY KCG L  A E F +M
Sbjct: 224 TIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAM 283

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                          P +Y   WN +I G+VQ    KEAL +F 
Sbjct: 284 -------------------------------PARYTKSWNTLIDGFVQNHEHKEALRIFE 312

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM   G+ PD +T V  LSAC+QLG L  G+ +H +I+      + +L  +L++MYAKCG
Sbjct: 313 EMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCG 372

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++A A +VF  M +++ +++T ++ G     +   A + F EM    ++  E+  + +LS
Sbjct: 373 DMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLS 432

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G +D+GR+  + +  +  ++  L   S +VD+  + G ++ A ++ R M      
Sbjct: 433 ACSQLGALDKGREIHSYIEEM-NVAKDLCLESALVDMYAKCGCIDTASEIFRKM-QHKQT 490

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLEL-DPQDSGI 517
           + W A+      +G          ++LEL DP+  GI
Sbjct: 491 LSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGI 527


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 178/444 (40%), Positives = 262/444 (59%), Gaps = 3/444 (0%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGMVSACAQL 193
           + D+     L + NS+I  + +S  P ++ + +  +    + + PD  T   +V  CAQ 
Sbjct: 65  ILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ- 123

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
                G  +H  + + G      + + L+ MY +   L S   +F+S+    +V  TTM+
Sbjct: 124 SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMV 183

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
              AK G +  AR +FD +P++  V WNA+I GY Q  +S+EAL LF  MQ  G+K + V
Sbjct: 184 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 243

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           + +  ++AC+ LGALD G W H +IEK    + V LGTALVDMY KCGN+ +AL+VF EM
Sbjct: 244 SMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEM 303

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            E+N  T++  IGGLA++G     +  FS M   G+ P+EITF+ +L  C   G VDEGR
Sbjct: 304 NEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGR 363

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            +F  M     + P+L+HY CMVDL GR+G LEEA   I +MP+      WGAL  ACR+
Sbjct: 364 SHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRM 423

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           + N+ +GE A+ KL+E++ ++ G YV L+N+Y D+  W+    VR+ M+  G+ K PGCS
Sbjct: 424 YKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCS 483

Query: 554 SIEVNGLLYEFIVRDKSHPELEQI 577
            +EVNG ++EF   DKSHP  + I
Sbjct: 484 VMEVNGEVHEFFSGDKSHPSYDVI 507



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 190/408 (46%), Gaps = 67/408 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + I GL+++     + +A  A+    NL Y  +IL     P  F+ N  IR + ++    
Sbjct: 32  LVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRAYSKSLTPH 91

Query: 61  EAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           ++   Y ++L+ N    PDN+T+  L + CA       G  + G ++K GF+ D +V + 
Sbjct: 92  KSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACE-AGPAVHGALIKHGFEYDPHVESG 150

Query: 120 VIHVFV-------------------------------SCGDLGLACNVFDESCVRNLVSW 148
           +I ++                                 CGD+G A N+FD    R+ VSW
Sbjct: 151 LIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSW 210

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I G+ + G  REA+ LF+ MQ++ V+ +EV+MI +V+AC  L  L+ G+  H YI +
Sbjct: 211 NAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEK 270

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + + +TV L  AL+DMY KCG ++ A ++F  M  K V +                    
Sbjct: 271 NKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYT-------------------- 310

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                      W+  IGG       ++ L LF  M+  GI P+ +T +  L  CS +G +
Sbjct: 311 -----------WSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFV 359

Query: 329 DDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP 374
           D+G   H    K +  +   L     +VD+Y + G + +AL   + MP
Sbjct: 360 DEGR-SHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMP 406


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/425 (42%), Positives = 268/425 (63%), Gaps = 3/425 (0%)

Query: 164 AIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           ++R+F  M ++    P+  T + +  AC     +  G +I  +  + GL   + + NA++
Sbjct: 15  SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMI 74

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            MY   G ++ A  +FD  +++ + S   MI GY   G +  A+++FD++ E+ VV W  
Sbjct: 75  RMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTT 134

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           II GYVQ    KEAL LFHEM  TG  P+  T    L+AC+ L ALD G WIH +I+K  
Sbjct: 135 IIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSE 194

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGKALDAISY 400
             +N  L  +L+DMYAKCG I  A +VFH+    +     + A+IGG A+HGK+ +AI  
Sbjct: 195 IKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDL 254

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F +M    + P+++TF+ +L+AC HG LV+EGR YF  M+S + + P+++HY CMVDLLG
Sbjct: 255 FEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLG 314

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           RSGLL+EAE+ + +MPMA D  +WGAL  ACR+H ++  G+R    + ELD    G +VL
Sbjct: 315 RSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVL 374

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           LAN+Y  S  W+EA  VR+ +E  G +KTPGCSSIE+NG+ ++F+V D+SHP+ +Q+Y  
Sbjct: 375 LANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLF 434

Query: 581 LVQLT 585
           L ++T
Sbjct: 435 LDEMT 439



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 174/364 (47%), Gaps = 64/364 (17%)

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL-GYEIFGHVLKLGFDVDMYVHNAV 120
           ++ ++  M+R  G  P+ +T+  +FK C + GL  L G +I  H +K+G + +++V NA+
Sbjct: 15  SMRIFLSMVRVSGFLPNRYTFVFVFKACGN-GLGVLEGEQIRVHAIKIGLESNLFVTNAM 73

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--------FP----------- 161
           I ++ + G +  A  VFD S  ++L SWN +I G+V SG        F            
Sbjct: 74  IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWT 133

Query: 162 ------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                       +EA+ LF +M      P+E T+   ++ACA L  L+ GR IH YI +S
Sbjct: 134 TIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKS 193

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            + +   L  +L+DMY KCG+++ A ++F                 + ++G         
Sbjct: 194 EIKMNERLLASLLDMYAKCGEIDFAAKVF-----------------HDEYGL-------- 228

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
               +  V PWNA+IGGY    +SKEA+ LF +M+   + P+ VT V  L+ACS    ++
Sbjct: 229 ----KLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVE 284

Query: 330 DGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
           +G  +             +     +VD+  + G + +A +    MP   ++  + A++G 
Sbjct: 285 EGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 344

Query: 388 LALH 391
             +H
Sbjct: 345 CRIH 348



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 10/273 (3%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   I G+++ G  +EA+DL+ +ML+  G  P+ FT       CA+L     G  I  +
Sbjct: 131 SWTTIIAGYVQVGCFKEALDLFHEMLQT-GPPPNEFTLASALAACANLVALDQGRWIHVY 189

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF-DESCVR-NLVSWNSLINGFVRSGFPR 162
           + K    ++  +  +++ ++  CG++  A  VF DE  ++  +  WN++I G+   G  +
Sbjct: 190 IDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSK 249

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANAL 221
           EAI LF  M++E+V P++VT + +++AC+  + +  GR     ++ S G+   +     +
Sbjct: 250 EAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCM 309

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR-----KIFDDLPEKY 276
           +D+  + G L+ AEE   +M      +    ++G  +    DI R     KI  +L   +
Sbjct: 310 VDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRI-HKDIERGQRIGKIIKELDSDH 368

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           +     +   Y  + +  EA A+  +++ +G K
Sbjct: 369 IGCHVLLANLYSASGQWDEAKAVRQKIEVSGRK 401


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 282/463 (60%), Gaps = 9/463 (1%)

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFV--RSGFPR---EAIRLFRDMQLERVEP 178
           F   G    A NVF      +L ++N +I  ++   SG      +A+ L++ M  + + P
Sbjct: 65  FSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVP 124

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           + +T   ++  C Q  D   G+ IH  + + G    V +AN+L+ +Y+  G L +A ++F
Sbjct: 125 NCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVF 184

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M+   VV+  +M++G  + G LD+A  +F  +  + ++ WN+II G  Q   +KE+L 
Sbjct: 185 DEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLE 244

Query: 299 LFHEMQATG---IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           LFHEMQ      +KPD +T    LSAC+QLGA+D G W+H ++ +     +VV+GTALV+
Sbjct: 245 LFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVN 304

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY KCG++ KA ++F EMPE+++  +T +I   ALHG    A + F EM   G+ P+ +T
Sbjct: 305 MYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVT 364

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F+G+LSAC H GLV++GR  F  M  ++ + P++ HY+CMVD+L R+ L +E+E LIRSM
Sbjct: 365 FVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSM 424

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM  DV VWGAL   C++HGNV +GE+    L++L+P +   YV   ++Y  + M++ A 
Sbjct: 425 PMKPDVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAK 484

Query: 536 KVRKMMEERGVEKT-PGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           ++R +M+E+ +EK  PGCS IE+NG + EF     S   ++++
Sbjct: 485 RIRNIMKEKRIEKKIPGCSMIEINGEVQEFSAGGSSELPMKEL 527



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 197/420 (46%), Gaps = 73/420 (17%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGF--LETG---KMREAVDLYKQ 68
           +RL+  C+ S   +  Y T +   ++NP+  ++N+ IR +  +E+G      +A+ LYKQ
Sbjct: 57  TRLLYVCSFSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQ 116

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           M       P+  T+P L K C        G  I   V+K GF  D+YV N++I ++++ G
Sbjct: 117 MFCKD-IVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGG 175

Query: 129 DLGLACNVFDESCVRNLVSWNSL-------------------------------INGFVR 157
            L  A  VFDE  V ++V+WNS+                               I G  +
Sbjct: 176 LLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQ 235

Query: 158 SGFPREAIRLFRDMQL---ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
            G  +E++ LF +MQ+   + V+PD++T+  ++SACAQL  ++ G+ +H Y+  +G+   
Sbjct: 236 GGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECD 295

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V +  AL++MY KCG ++ A EIF+ M                               PE
Sbjct: 296 VVIGTALVNMYGKCGDVQKAFEIFEEM-------------------------------PE 324

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K    W  +I  +       +A   F EM+  G+KP+ VT V  LSAC+  G ++ G W 
Sbjct: 325 KDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWC 384

Query: 335 HRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHG 392
              +++  +    V     +VD+ ++     ++  +   MP +  +  + A++GG  +HG
Sbjct: 385 FDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHG 444


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/449 (40%), Positives = 276/449 (61%), Gaps = 4/449 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
            ++S   N VSW S I    R+G   EA + F DM+L  VEP+ +T I ++S C      
Sbjct: 28  LNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSG 87

Query: 197 N--LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           +  LG  +H Y  + GL    V +  A++ MY K G+++ A  +FD M +K  V+  TMI
Sbjct: 88  SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMI 147

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + G +D A K+FD +PE+ ++ W A+I G+V     +EALA F EMQ +G+KPD V
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYV 207

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             +  L+AC+ LGAL  G+W+HR++  ++F  NV +  +L+D+Y +CG +  A QVF +M
Sbjct: 208 AIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKM 267

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ ++I G A +G A +++ YF +M      PD +TF G L+AC H GLV+EG 
Sbjct: 268 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGL 327

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M S +R+SP+++HY C+VDL  R+G LE+A +L++SMPM  + VV G+L  ACR 
Sbjct: 328 RYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRN 387

Query: 494 HGNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           HGN ++  E+    L +L+ +    YV+L+NMY     WE A K+R+ M+  G++K PG 
Sbjct: 388 HGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGF 447

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SSIE++   + F+  D +H E   I + L
Sbjct: 448 SSIEIDDCTHVFMAGDSAHVETTNICEVL 476



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 68/407 (16%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           I+  ++ +   + L    + N+ SW   I      G++ EA   +  M R  G  P++ T
Sbjct: 15  ITRKRHANPKIQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDM-RLAGVEPNHIT 73

Query: 82  YPLLFKVCASL--GLRFLGYEIFGHVLKLGFD----------VDMYVH------------ 117
           +  +   C     G   LG  + G+  KLG D          + MY              
Sbjct: 74  FIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFD 133

Query: 118 ----------NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL 167
                     N +I  ++  G +  A  +FD+   R+L+SW ++INGFV  GF  EA+  
Sbjct: 134 YMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAW 193

Query: 168 FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
           FR+MQ+  V+PD V +I  ++AC  L  L+ G  +H Y+        V ++N+L+D+Y +
Sbjct: 194 FREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCR 253

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
           CG +E A ++FD M  +TVVS  ++IVG+A  G                           
Sbjct: 254 CGCVEFARQVFDKMEKRTVVSWNSVIVGFAANG--------------------------- 286

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLN 346
                + E+L  F +MQ    KPDAVT    L+ACS +G +++G+ +    I     +  
Sbjct: 287 ----NAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPR 342

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHG 392
           +     LVD+Y++ G +  AL++   MP + N +   +++     HG
Sbjct: 343 IEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHG 389



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 34/155 (21%)

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC--- 423
           +Q  ++    N++++T+ I  L  +G+  +A   FS+M   G+ P+ ITF+ ILS C   
Sbjct: 25  IQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDF 84

Query: 424 ---------------CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC-------------- 454
                          C  GL          +  ++    ++K   C              
Sbjct: 85  PSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWN 144

Query: 455 -MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            M+D   RSG ++ A ++   MP   D++ W A+ 
Sbjct: 145 TMIDGYMRSGQVDNAAKMFDKMP-ERDLISWTAMI 178


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 308/549 (56%), Gaps = 29/549 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN+ + GF+E G +  + + ++++       P+  T   +  +C        G+  FG 
Sbjct: 204 SWNLMVDGFVEVGDLNSSWEFFEKI-------PNPNTVSWVTMLC--------GFARFGK 248

Query: 105 VLKLG--FDV----DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           + +    FD     ++   NA+I  +V    +  A ++F E   +N +SW ++ING+VR 
Sbjct: 249 IAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRM 308

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G   EA +L   M    V         M+S   Q + ++  R+I   IS       V   
Sbjct: 309 GKLDEARQLLNQMPYRNV----AAQTAMISGYVQNKRMDDARQIFNQIS----IRDVVCW 360

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N ++  Y +CG+++ A  +F  MV K +VS  TM+  YA+ G +D A KIF+++ EK +V
Sbjct: 361 NTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIV 420

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN++I G  Q     +AL  F  M   G KPD  T    LS+C+ L AL  G  +H+ +
Sbjct: 421 SWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLV 480

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K  +  ++ +  AL+ MYAKCG+I+ A  +F ++   + +++ ++I   AL+G   +A+
Sbjct: 481 MKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREAL 540

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             F +M   G+ PDE+TF+GILSAC H GL+D+G K F  M   + + P  +HY+CMVDL
Sbjct: 541 KLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDL 600

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGR+G LEEA QL+R M + A+  +WGAL  ACR+HGN+ + + AA KLLE +P  +  Y
Sbjct: 601 LGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNY 660

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           VLL+NM  ++  W+E  +VR++M+E+G EK PG S IE+   ++ F+  D +HP   ++ 
Sbjct: 661 VLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELC 720

Query: 579 DCLVQLTRH 587
             L  LT H
Sbjct: 721 HILRSLTAH 729



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 182/394 (46%), Gaps = 29/394 (7%)

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
            HN++I  F   G +  A  +FD    RN+VSWNS+I  ++ +    EA +LF  M    
Sbjct: 48  THNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTR- 106

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
              D  +   M++   +  +L   R +   +            NA++  Y K  + + A 
Sbjct: 107 ---DLYSWTLMITCYTRNGELAKARNLFNLLP---YKWNPVCCNAMVAGYAKNRQFDEAR 160

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD+M  K +VS  +M+ GY + G + +  + F+++ E+ VV WN ++ G+V+      
Sbjct: 161 RLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNS 220

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           +   F ++      P+ V+ V  L   ++ G + +     R  ++     NVV   A++ 
Sbjct: 221 SWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEA---RRLFDQMPIR-NVVAWNAMIA 272

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
            Y +  ++ +A+ +F EMPE+NS+++T +I G    GK  +A    ++M    +      
Sbjct: 273 AYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQT-- 330

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
              ++S       +D+ R+ F Q+S        +  ++ M+    + G ++EA  L + M
Sbjct: 331 --AMISGYVQNKRMDDARQIFNQIS-----IRDVVCWNTMIAGYSQCGRMDEALHLFKQM 383

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
            +  D+V W  +  +    G +     AA+K+ E
Sbjct: 384 -VKKDIVSWNTMVASYAQVGQMD----AAIKIFE 412



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 174/375 (46%), Gaps = 27/375 (7%)

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
           ++ HN  I      G +  A  VF     +N V+ NS+I+ F ++G   +A +LF  M  
Sbjct: 15  VFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
             +    V+   M++A    + +   R++     +   T  +     ++  Y + G+L  
Sbjct: 75  RNI----VSWNSMIAAYLHNDRVEEARQLF----DKMPTRDLYSWTLMITCYTRNGELAK 126

Query: 234 AEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           A  +F+ +  K   V C  M+ GYAK    D AR++FD +P K +V WN+++ GY +   
Sbjct: 127 ARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGE 186

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            +  L  F EM     + D V+    +    ++G L+   W   F EK   N N V    
Sbjct: 187 MRLGLQFFEEM----AERDVVSWNLMVDGFVEVGDLNSS-W--EFFEKIP-NPNTVSWVT 238

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           ++  +A+ G IA+A ++F +MP RN + + A+I     +    +AIS F EM       +
Sbjct: 239 MLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KN 294

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            I++  +++     G +DE R+   QM   +R    +   + M+    ++  +++A Q+ 
Sbjct: 295 SISWTTVINGYVRMGKLDEARQLLNQMP--YR---NVAAQTAMISGYVQNKRMDDARQIF 349

Query: 473 RSMPMAADVVVWGAL 487
             + +  DVV W  +
Sbjct: 350 NQISI-RDVVCWNTM 363



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 151/324 (46%), Gaps = 28/324 (8%)

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           K G+++ A ++F  M +K  V+  +MI  +AK G +  AR++FD +P++ +V WN++I  
Sbjct: 27  KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAA 86

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           Y+   R +EA  LF +M       D  +    ++  ++ G L     +   +    +  N
Sbjct: 87  YLHNDRVEEARQLFDKMPTR----DLYSWTLMITCYTRNGELAKARNLFNLLP---YKWN 139

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            V   A+V  YAK     +A ++F  MP ++ +++ +++ G   +G+    + +F EM  
Sbjct: 140 PVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE 199

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
                D +++  ++      G ++   ++F ++      +P    +  M+    R G + 
Sbjct: 200 ----RDVVSWNLMVDGFVEVGDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIA 250

Query: 467 EAEQLIRSMPMAADVVVWGALFFA----CRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           EA +L   MP+  +VV W A+  A    C +   +S+        +E+  ++S  +  + 
Sbjct: 251 EARRLFDQMPI-RNVVAWNAMIAAYVQNCHVDEAISL-------FMEMPEKNSISWTTVI 302

Query: 523 NMYRDSNMWEEAGKVRKMMEERGV 546
           N Y      +EA ++   M  R V
Sbjct: 303 NGYVRMGKLDEARQLLNQMPYRNV 326


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/517 (35%), Positives = 292/517 (56%), Gaps = 11/517 (2%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           +NF  P+L      + L+     I  HV+K       ++   ++ V     DLG A  +F
Sbjct: 14  ENFFVPILQNCKNIVELK----SIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLF 69

Query: 138 DESCVRNLVSWNSLINGFVRSG-------FPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            +    N   +N++I     +        F +E +RL        + PD  T   ++ +C
Sbjct: 70  KQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSC 129

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           + L   NLG+++H ++ + G    + + NAL+DMY KC  L  A ++FD MV +  +S  
Sbjct: 130 SGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWN 189

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++I G+   G +  A  +FD +P + +V W A+I GY +     +AL +F +MQ  G++P
Sbjct: 190 SIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEP 249

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D ++ +  L AC+QLGAL+ G WIH + ++        +  AL++MY+KCG I +A Q+F
Sbjct: 250 DEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLF 309

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
            +M + + ++++ +IGGLA HGKA +AI  F  M    + P+ ITFLG+LSAC H G  +
Sbjct: 310 DQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWN 369

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           EG  YF  MS  + + P+++HY C+VD+LGR+G L +A  +I  MPM  D  +WG+L  +
Sbjct: 370 EGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSS 429

Query: 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
           CR H N+ I   A   L EL+P D+G YVLL+N+Y D   W+   ++RK+++ + ++KTP
Sbjct: 430 CRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTP 489

Query: 551 GCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           G S I++N ++ EF+  D S P    I+  L  LT H
Sbjct: 490 GSSLIDINNVVQEFVSWDDSKPFSRDIFWLLELLTSH 526



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 80/458 (17%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL 65
           L    F  ++++  C   ++++L Y + +   V+ PN + +N  IR          A+  
Sbjct: 42  LSQSSFLVTKMVDVC--DKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILF 99

Query: 66  YKQMLR------NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           YK+MLR           PD FT+P + K C+ L    LG ++  H+ K G   ++ + NA
Sbjct: 100 YKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENA 159

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR---------------------- 157
           +I ++  C  L  A  VFD    R+ +SWNS+I+G V                       
Sbjct: 160 LIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSW 219

Query: 158 ----SGFPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
               SG+ R     +A+ +FR MQ+  VEPDE+++I ++ ACAQL  L +G+ IH Y   
Sbjct: 220 TAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDR 279

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +GL     + NALM+MY KCG +  A ++FD M    V+S +TMI G A  G        
Sbjct: 280 NGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHG-------- 331

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  +++EA+ LF  M+   I+P+ +T +  LSAC+  G  
Sbjct: 332 -----------------------KAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFW 368

Query: 329 DDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIG 386
           ++G+     + K+ +    V     LVD+  + G +++AL V  +MP + +S  + +++ 
Sbjct: 369 NEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLS 428

Query: 387 GLALHGK---ALDAISYFSEMIGVGLMPDEITFLGILS 421
               H     A+ A+ +  E     L PD+     +LS
Sbjct: 429 SCRTHSNLDIAIIAMEHLEE-----LEPDDTGNYVLLS 461


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/582 (32%), Positives = 307/582 (52%), Gaps = 36/582 (6%)

Query: 4   TGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           TGL++  F  S L+  +  I E   +    K+   +   N+ +W   I G +  G     
Sbjct: 145 TGLVNSVFVGSALLDMYMKIGE---IGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAG 201

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +  +  M R+     D++ Y +  K  A  G    G  I    LK GFD + +V N++  
Sbjct: 202 LAYFSGMGRSK-VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTT 260

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG L    + F +    ++VSW +++  +++ G     ++ F+ M+   V P+E T
Sbjct: 261 MYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
              ++S CA    L  G ++H ++   G    + +AN++M +Y KCG+L S  ++F SM 
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSM- 379

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                             F DI             + W+ II  Y Q    +EA      
Sbjct: 380 -----------------KFRDI-------------ITWSTIIAAYSQVGYGEEAFEYLSR 409

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M++ G KP+       LS C  +  L+ G  +H  +         ++ +AL+ MYAKCG+
Sbjct: 410 MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGS 469

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           IA+A ++F +  + + +++TA+I G A HG + +AI  F  +  VGL PD +TF+G+L+A
Sbjct: 470 IAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTA 529

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H G+VD G  YF  MS  + ++P  +HY CM+DLL R+G L +AE LIRSMP+  D V
Sbjct: 530 CSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDV 589

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           VW  L  ACR+HG+V  G+RAA ++L+LDP  +G ++ LAN++     W+EA  +R +M+
Sbjct: 590 VWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMK 649

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            +GV K PG SS++V   ++ F+  D+SHP+ E IY+ L +L
Sbjct: 650 SKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEEL 691



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 208/469 (44%), Gaps = 39/469 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL-GYE 100
           +  SW   I G++ +    EA+ L+ +M      R D F   L  K C  LGL +L G  
Sbjct: 79  DEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCG-LGLNYLYGTN 137

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           + G  +K G    ++V +A++ +++  G++G +C VFDE   RN V+W ++I G VR+G+
Sbjct: 138 LHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGY 197

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
               +  F  M   +VE D       + A A    LN GR IH    + G      +AN+
Sbjct: 198 SEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANS 257

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L  MY KCGKL+     F  M    VVS TT++  Y + G  D                 
Sbjct: 258 LTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDC---------------- 301

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                           L  F  M+A+ + P+  T    +S C+    L  G  +H  +  
Sbjct: 302 ---------------GLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLC 346

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F   + +  +++ +Y+KCG +A   +VF  M  R+ +T++ II   +  G   +A  Y
Sbjct: 347 VGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEY 406

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
            S M   G  P+E     +LS C    ++++G++  A + S+  L       S ++ +  
Sbjct: 407 LSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSV-GLEQTSMVCSALIIMYA 465

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           + G + EA ++        D++ W A+      HG+     + A++L E
Sbjct: 466 KCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGH----SQEAIELFE 509



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 181/395 (45%), Gaps = 41/395 (10%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
           VD+   N  + + V    L  A ++FD+   R+ VSW ++I+G+V S    EA+RLF  M
Sbjct: 47  VDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM 106

Query: 172 QLE---RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
           +L+   R++P  +++   +  C    +   G  +H +  ++GL  +V + +AL+DMY+K 
Sbjct: 107 RLQSELRIDPFLLSL--GLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKI 164

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G++  + ++FD M  +  V+                               W A+I G V
Sbjct: 165 GEIGRSCKVFDEMPTRNAVT-------------------------------WTAVITGLV 193

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           +A  S+  LA F  M  + ++ D+      L A +  GAL+ G  IH    K+ F+ N  
Sbjct: 194 RAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSF 253

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +  +L  MY KCG +   L  F +M   + +++T I+      GK    +  F  M    
Sbjct: 254 VANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASN 313

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           ++P+E TF  ++S C +   +  G +  A +  +  ++  L   + ++ L  + G L   
Sbjct: 314 VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNA-LSVANSIMTLYSKCGELASV 372

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++  SM    D++ W  +  A   +  V  GE A
Sbjct: 373 SKVFCSMKF-RDIITWSTIIAA---YSQVGYGEEA 403


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 309/556 (55%), Gaps = 54/556 (9%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV--CASLGLRFLGYEIFG 103
           W+  +R     G+ RE++ L    LR+G   P      L   V  CA+L L     +I  
Sbjct: 20  WSARVRTLTRLGRHRESLAL----LRHGDPSPPPHALALPASVISCAALSLPSGVAQIHA 75

Query: 104 HVLKLGF--DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL------VSWNSLINGF 155
              K G     D Y+ +A++  +   G L LA  + DE  + +        ++NS+I+G 
Sbjct: 76  LAAKRGLLPAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGC 135

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
                P  +  LFR M+   V  D VT++ +V A      L++  ++H   +  GL    
Sbjct: 136 ALHALPVASFALFRRMRAAAVGFDAVTLLALVPAT----PLSVVPQVHALAARVGLATET 191

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP-- 273
            +AN LM  Y + G   +A                             +AR++FD++P  
Sbjct: 192 SVANCLMSTYARGGAFGAA-----------------------------LARRVFDEMPLA 222

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQA---TGIKPDAVTTVHCLSACSQLGALDD 330
            + +V WNA++  + Q   + +AL L+  M++   +G++PDAVT V  LS+ + LGA   
Sbjct: 223 SRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGV 282

Query: 331 GIWIHRFIEKE--NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           G  +  ++ +    F+ NV L  AL++ +A+CG++ +A Q+F EMP ++ +++TA+I G 
Sbjct: 283 GFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGH 342

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
            +HG    A+S F  M+  G+ PD +  + + SAC H GL DEGR+YF+ M S+++L P 
Sbjct: 343 GMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPT 402

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           L+HY+CMVDLLGR+G LEEA +LI SMPM AD  VWGAL  AC++H NV +GE A  +++
Sbjct: 403 LEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDVGEEAFTRVI 462

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           EL+P++ G YVL++N+Y D+   +   +VR MM ERG++K PGCS +E  G ++ F+  D
Sbjct: 463 ELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVEHKGRVHLFMADD 522

Query: 569 KSHPELEQIYDCLVQL 584
            SHP+  +IY+ +++L
Sbjct: 523 HSHPQARRIYELVIRL 538



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 7/203 (3%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQML--RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           SWN  +    + G   +A++LY++M      G  PD  T   +    A LG R +G+++ 
Sbjct: 228 SWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVE 287

Query: 103 GHVLKL--GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
            +V +   GF  ++ + NA+I+    CG L  A  +FDE   +++VSW +LI G    G 
Sbjct: 288 HYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGN 347

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES--GLTLTVPLA 218
              A+ LF  M  E + PD V M+ + SAC+     + GR  ++   ES   L  T+   
Sbjct: 348 GDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRR-YFSAMESVYKLRPTLEHY 406

Query: 219 NALMDMYVKCGKLESAEEIFDSM 241
             ++D+  + G+LE A E+  SM
Sbjct: 407 TCMVDLLGRAGRLEEARELISSM 429



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 134/321 (41%), Gaps = 34/321 (10%)

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           PW+A +    +  R +E+LAL      +   P A+     + +C+ L        IH   
Sbjct: 19  PWSARVRTLTRLGRHRESLALLRHGDPSP-PPHALALPASVISCAALSLPSGVAQIHALA 77

Query: 339 EKENF--NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS------LTYTAIIGGLAL 390
            K       +  L +AL+  Y++ G +  A Q+  EMP  ++        + ++I G AL
Sbjct: 78  AKRGLLPAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCAL 137

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           H   + + + F  M    +  D +T L ++ A     +V +     A++     L+ +  
Sbjct: 138 HALPVASFALFRRMRAAAVGFDAVTLLALVPATPL-SVVPQVHALAARVG----LATETS 192

Query: 451 HYSCMVDLLGRSGLLEE--AEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKL 507
             +C++    R G      A ++   MP+A+ D+V W A+  A   +G        A+  
Sbjct: 193 VANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNG-------LAVDA 245

Query: 508 LEL-----DPQDSGI---YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG-CSSIEVN 558
           LEL      P+ SG+    V +  +   +      G V   +E    ++ PG  +++++ 
Sbjct: 246 LELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARG-VGFDVEHYVRQRIPGFHTNVQLC 304

Query: 559 GLLYEFIVRDKSHPELEQIYD 579
             L  F  R  S P  +Q++D
Sbjct: 305 NALINFHARCGSLPRAQQLFD 325


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 308/558 (55%), Gaps = 44/558 (7%)

Query: 5   GLISHGFAPSRLI----AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           G  S  F  S L+    AF ++ E+      +K+   +   +  SW   I    + G   
Sbjct: 151 GFTSDVFVMSGLVNYYGAFRSVKEA------SKVFEEMYERDVVSWTSMISACAQCGHWD 204

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + + +  +M +  G  P+  T   L   C        G  ++  V K G + D+ + NA+
Sbjct: 205 KVLKMLSEM-QAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNAL 263

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  CG L  A   F     R   SWN+LI+GFV++   +EA+R+F +M L  V PD 
Sbjct: 264 ISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDG 323

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T++ ++SACAQL +L  G  +H YI ++G+     L N+L++MY KCG + +AE +F +
Sbjct: 324 ITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQT 383

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K VVS T M+ GY K                ++ + +N                 LF
Sbjct: 384 MTKKDVVSWTVMVCGYVK--------------GHQFTMAFN-----------------LF 412

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EM+   +    +  V  LSACSQLGALD G  IH +IE+ N   ++ L +ALVDMYAKC
Sbjct: 413 EEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKC 472

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGI 419
           G I  A ++F +M  + +L++ A+IGGLA +G   +A+  F +M+ +    PD IT   +
Sbjct: 473 GCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAV 532

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H G+VDEG +YF  MSS+  + P  +HY C+VDLLGR+G+L+EA   I+ MP+  
Sbjct: 533 LGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEP 591

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           + V+WG+L  ACR+H  + +G+     ++ + P D G++VL++N++ + + W++   VR 
Sbjct: 592 NPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRG 651

Query: 540 MMEERGVEKTPGCSSIEV 557
           +M  RG+EKTPG SS++V
Sbjct: 652 LMGSRGIEKTPGHSSVQV 669



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/517 (29%), Positives = 262/517 (50%), Gaps = 39/517 (7%)

Query: 6   LISHGFAPSRLIAFCAISESK-NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           L S  F   RLIA  A   ++ ++ Y  K+   +  PN+F WN  IRG+      R+A+ 
Sbjct: 45  LTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALA 104

Query: 65  LYKQMLRNGGTRPDNFT---YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           ++++M R G   PDN+T           A L  R  G  I   V ++GF  D++V + ++
Sbjct: 105 VFREMRRRG-VSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLV 163

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           + + +   +  A  VF+E   R++VSW S+I+   + G   + +++  +MQ E + P++V
Sbjct: 164 NYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKV 223

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+I ++SAC Q + ++ GR ++  + + G+   V + NAL+ MY KCG L  A E F +M
Sbjct: 224 TIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAM 283

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                          P +Y   WN +I G+VQ    KEAL +F 
Sbjct: 284 -------------------------------PARYTKSWNTLIDGFVQNHEHKEALRIFE 312

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM   G+ PD +T V  LSAC+QLG L  G+ +H +I+      + +L  +L++MYAKCG
Sbjct: 313 EMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCG 372

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++A A +VF  M +++ +++T ++ G     +   A + F EM    ++  E+  + +LS
Sbjct: 373 DMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLS 432

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G +D+GR+  + +  +  ++  L   S +VD+  + G ++ A ++ R M      
Sbjct: 433 ACSQLGALDKGREIHSYIEEM-NVAKDLCLESALVDMYAKCGCIDTASEIFRKM-QHKQT 490

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLEL-DPQDSGI 517
           + W A+      +G          ++LEL DP+  GI
Sbjct: 491 LSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGI 527


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 310/552 (56%), Gaps = 38/552 (6%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
            ++ P+  SWN  I G +      +A++L  QM R+G   P+ FT     K CA +GL+ 
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSG-ICPNIFTLSSALKACAGMGLKE 376

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG---DLGLACNVFDESCVRNLVSWNSLIN 153
           LG ++   ++K+  + D++V   ++ ++  C    D  +A N+  E   ++L++WN++I+
Sbjct: 377 LGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE---KDLIAWNAIIS 433

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G+ +     EA+ LF +M  E +  ++ T+  ++ + A L+ +++ R++H    +SG   
Sbjct: 434 GYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHS 493

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + + N+L+D Y KC  +E AE                               +IF++  
Sbjct: 494 DIYVVNSLIDSYGKCSHVEDAE-------------------------------RIFEECT 522

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
              +V + ++I  Y Q  + +EAL LF EMQ   +KPD       L+AC+ L A + G  
Sbjct: 523 IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ 582

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  I K  F L++  G +LV+MYAKCG+I  A + F E+ ER  ++++A+IGGLA HG 
Sbjct: 583 LHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH 642

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
              A+  F++M+  G+ P+ IT + +L AC H GLV E + YF  M  +F   P  +HY+
Sbjct: 643 GRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA 702

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CM+DLLGR+G + EA +L+  MP  A+  VWGAL  A R+H +V +G RAA  L  L+P+
Sbjct: 703 CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPE 762

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
            SG +VLLAN+Y  +  WE   +VR++M +  V+K PG S IEV   +Y F+V D+SH  
Sbjct: 763 KSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYR 822

Query: 574 LEQIYDCLVQLT 585
            ++IY  L +L+
Sbjct: 823 SQEIYAKLDELS 834



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 215/420 (51%), Gaps = 35/420 (8%)

Query: 69  MLRNGGTRPDNFTYP-LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           ++  G   P + +Y  LL + C +  LR  G +I  H+ K G   D  + N +I+++  C
Sbjct: 46  LIDKGNFTPTSVSYSKLLSQCCTTKSLR-PGLQIHAHITKSGLSDDPSIRNHLINLYSKC 104

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
            + G A  + DES   +LVSW++LI+G+ ++G    A+  F +M L  V+ +E T   ++
Sbjct: 105 RNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVL 164

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC+ ++DL +G+++H  +  SG    V +AN L+ MY KC +                 
Sbjct: 165 KACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDE----------------- 207

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                        FLD ++++FD++PE+ VV WNA+   YVQ     EA+ LF+EM  +G
Sbjct: 208 -------------FLD-SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSG 253

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           IKP+  +    ++AC+ L     G  IH ++ K  ++ +     ALVDMYAK G++A A+
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VF ++ + + +++ A+I G  LH     A+    +M   G+ P+  T    L AC   G
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG 373

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           L + GR+  + +  +  +   L     +VD+  +  LLE+A      +P   D++ W A+
Sbjct: 374 LKELGRQLHSSLMKM-DMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAI 431



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 220/468 (47%), Gaps = 39/468 (8%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           +K LF+ +   N  SWN     +++     EAV L+ +M+ + G +P+ F+   +   C 
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLS-GIKPNEFSLSSMVNACT 269

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            L     G  I G+++KLG+D D +  NA++ ++   GDL  A +VF++    ++VSWN+
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G V      +A+ L   M+   + P+  T+   + ACA +    LGR++H  + +  
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD 389

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           +   + ++  L+DMY KC  LE A   F+ +  K +++                      
Sbjct: 390 MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA---------------------- 427

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                    WNAII GY Q     EAL+LF EM   GI  +  T    L + + L  +  
Sbjct: 428 ---------WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHV 478

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
              +H    K  F+ ++ +  +L+D Y KC ++  A ++F E    + +++T++I   A 
Sbjct: 479 CRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQ 538

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           +G+  +A+  F EM  + L PD      +L+AC +    ++G++       I +    L 
Sbjct: 539 YGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVH---ILKYGFVLD 595

Query: 451 HYS--CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            ++   +V++  + G +++A +    +     +V W A+      HG+
Sbjct: 596 IFAGNSLVNMYAKCGSIDDAGRAFSELTERG-IVSWSAMIGGLAQHGH 642



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%)

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           P   +I    Q  +  +  A+ + +      P +V+    LS C    +L  G+ IH  I
Sbjct: 23  PAPKLIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHI 82

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K   + +  +   L+++Y+KC N   A ++  E  E + ++++A+I G A +G    A+
Sbjct: 83  TKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGAL 142

Query: 399 SYFSEMIGVGLMPDEITFLGILSAC 423
             F EM  +G+  +E TF  +L AC
Sbjct: 143 MAFHEMHLLGVKCNEFTFSSVLKAC 167


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/493 (37%), Positives = 276/493 (55%), Gaps = 32/493 (6%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           + + CA+ G   LG  + G  +K          N ++ ++  CG L  A  VFD   VR 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +V+W SLI  + R G   EAIRLF +M  E V PD  T+  ++ ACA    L  G+++H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           YI E+ +   + + NALMDMY KC                               G ++ 
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKC-------------------------------GSMED 152

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           A  +F ++P K ++ WN +IGGY +     EAL+LF +M    +KPD  T    L AC+ 
Sbjct: 153 ANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACAS 211

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           L +LD G  +H  I +  F  +  +  ALVDMY KCG    A  +F  +P ++ +T+T +
Sbjct: 212 LASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVM 271

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G  +HG   +AI+ F+EM   G+ PDE++F+ IL AC H GL+DEG ++F  M     
Sbjct: 272 IAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECN 331

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           + PKL+HY+C+VDLL RSG L  A + I+SMP+  D  +WGAL   CR+H +V + E+ A
Sbjct: 332 VKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVA 391

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
             + EL+P+++G YVLLAN Y ++  WEE  K+R+ +  RG++K PGCS IEV   ++ F
Sbjct: 392 EHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIF 451

Query: 565 IVRDKSHPELEQI 577
           +  + SHP+ ++I
Sbjct: 452 LAGNSSHPQAKKI 464



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 175/349 (50%), Gaps = 35/349 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +W   I  +   G   EA+ L+ +M R G   PD FT   +   CA  G    G ++  +
Sbjct: 66  TWTSLIAAYAREGLSDEAIRLFHEMDREG-VSPDIFTITTVLHACACNGSLENGKDVHNY 124

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           + +     +++V NA++ ++  CG +  A +VF E  V++++SWN++I G+ ++  P EA
Sbjct: 125 IRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEA 184

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + LF DM LE ++PD  T+  ++ ACA L  L+ G+E+H +I  +G      +ANAL+DM
Sbjct: 185 LSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDM 243

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           YVKCG    A  +FD +  K +++ T MI GY   GF                       
Sbjct: 244 YVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGF----------------------- 280

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NF 343
                      A+  F+EM+  GI+PD V+ +  L ACS  G LD+G      ++ E N 
Sbjct: 281 --------GNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNV 332

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
              +     +VD+ A+ G +A A +    MP E ++  + A++ G  +H
Sbjct: 333 KPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIH 381



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 179/364 (49%), Gaps = 39/364 (10%)

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           M+ ++ ACA   D++LGR +H    ++ +       N L+DMY KCG L+ A  +FD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            +TVV+ T++I  YA+ G  D                               EA+ LFHE
Sbjct: 61  VRTVVTWTSLIAAYAREGLSD-------------------------------EAIRLFHE 89

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M   G+ PD  T    L AC+  G+L++G  +H +I + +   N+ +  AL+DMYAKCG+
Sbjct: 90  MDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGS 149

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A  VF EMP ++ +++  +IGG + +    +A+S F +M+ + + PD  T   IL A
Sbjct: 150 MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPA 208

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C     +D G++    +      S + +  + +VD+  + G+   A  L   +P   D++
Sbjct: 209 CASLASLDRGKEVHGHILRNGFFSDQ-QVANALVDMYVKCGVPVLARLLFDMIP-TKDLI 266

Query: 483 VWGALFFACRLH--GNVSIGERAAMKLLELDPQD-SGIYVLLANMYRDSNMWEEAGKVRK 539
            W  +     +H  GN +I     M+   ++P + S I +L A  +  S + +E  +   
Sbjct: 267 TWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSH--SGLLDEGWRFFN 324

Query: 540 MMEE 543
           +M++
Sbjct: 325 VMQD 328



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 15/277 (5%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
            SWN  I G+ +     EA+ L+  M+     +PD  T   +   CASL     G E+ G
Sbjct: 166 ISWNTMIGGYSKNSLPNEALSLFGDMVLE--MKPDGTTLACILPACASLASLDRGKEVHG 223

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           H+L+ GF  D  V NA++ ++V CG   LA  +FD    ++L++W  +I G+   GF   
Sbjct: 224 HILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNN 283

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REIHWYISESGLTLTVPLANALM 222
           AI  F +M+   +EPDEV+ I ++ AC+    L+ G R  +    E  +   +     ++
Sbjct: 284 AITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIV 343

Query: 223 DMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARK----IFDDLPEK-- 275
           D+  + GKL  A +   SM +         ++ G      + +A K    +F+  PE   
Sbjct: 344 DLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTG 403

Query: 276 -YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
            YV+  N     Y +A++ +E   L  ++   G+K +
Sbjct: 404 YYVLLANT----YAEAEKWEEVKKLRQKIGRRGLKKN 436


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 200/614 (32%), Positives = 319/614 (51%), Gaps = 70/614 (11%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +   + FSWNV + G+ ++G + EA+DLY +M+   G RPD +T+P + + C  +
Sbjct: 144 RVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW-AGVRPDVYTFPCVLRSCGGV 202

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G E+  HVL+ GF  ++ V NA++ ++  CGD+  A  VFD   V + +SWN++I
Sbjct: 203 PDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMI 262

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G   +G     + LF  M  + V+P+ +T+  +  A   L D+   +E+H    + G  
Sbjct: 263 AGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFA 322

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF--- 269
             V   N+L+ MY   G +  A  +F  M  +  ++ T MI GY K GF D A +++   
Sbjct: 323 GDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALM 382

Query: 270 -------DD------------------------LPE-----KYVVPWNAIIGGYVQAKRS 293
                  DD                        L E      Y+V  NAI+  Y ++KR 
Sbjct: 383 EVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRI 442

Query: 294 KEALALF---HEMQATG---------------------------IKPDAVTTVHCLSACS 323
            +A+ +F   HE                                +KP++VT +  L+AC+
Sbjct: 443 DKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACA 502

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
             GAL  G  IH  + +        L  AL+D+Y KCG    A   F     ++ +++  
Sbjct: 503 ATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNI 562

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G   HG    A+S+F++M+ +G  PDE+TF+ +L AC  GG+V EG + F  M+  +
Sbjct: 563 MIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKY 622

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + P LKHY+CMVDLL R+G L EA   I  MP+  D  VWGAL   CR+H +V +GE A
Sbjct: 623 SIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELA 682

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A  +L L+P D+G +VLL ++Y D+ +W++  +VRK M E+G++   GCS +EV G+++ 
Sbjct: 683 AKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHA 742

Query: 564 FIVRDKSHPELEQI 577
           F+  D+SHP++ +I
Sbjct: 743 FLTDDESHPQIREI 756



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 202/449 (44%), Gaps = 53/449 (11%)

Query: 47  NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC-----ASLGLRFLGYEI 101
           +  +R     G++ +A+     +L +    PD   Y  LF++C        GLR   +  
Sbjct: 60  STELRALCSHGQLAQAL----WLLESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHAD 115

Query: 102 FGHV---LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
             H    L+LG        NA++ + V  G+   A  VF +   R++ SWN ++ G+ +S
Sbjct: 116 DRHAWFGLRLG--------NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKS 167

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G   EA+ L+  M    V PD  T   ++ +C  + D  +GRE+H ++   G    V + 
Sbjct: 168 GLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVL 227

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NALM MY KCG + +A ++FDSM   TV+ C                            +
Sbjct: 228 NALMTMYAKCGDVMAARKVFDSM---TVMDC----------------------------I 256

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WNA+I G+ +       L LF  M    ++P+ +T      A   L  +     +H   
Sbjct: 257 SWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLA 316

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K  F  +V    +L+ MYA  G + +A  VF  M  R+++T+TA+I G   +G    A+
Sbjct: 317 VKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKAL 376

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             ++ M    + PD+IT    L+AC   G +D G K      S   +S  +   + ++++
Sbjct: 377 EVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFIS-YIVVTNAILEM 435

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             +S  +++A ++ + M    DVV W ++
Sbjct: 436 YAKSKRIDKAIEVFKCM-HEKDVVSWSSM 463



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++SK +D   ++   +   +  SW+  I GF    +  EA+  ++ ML +   +P++ T+
Sbjct: 437 AKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD--VKPNSVTF 494

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
                 CA+ G    G EI  HVL+ G + + Y+ NA+I ++V CG  G A   F     
Sbjct: 495 IAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGA 554

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +++VSWN +I GFV  G    A+  F  M      PDEVT + ++ AC++   ++ G E+
Sbjct: 555 KDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWEL 614

Query: 203 -HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            H    +  +   +     ++D+  + G+L  A    + M
Sbjct: 615 FHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEM 654



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 149/336 (44%), Gaps = 14/336 (4%)

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
             M+    +FG    A ++F  +PE+ V  WN ++GGY ++    EAL L+H M   G++
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD  T    L +C  +     G  +H  + +  F   V +  AL+ MYAKCG++  A +V
Sbjct: 187 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKV 246

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  M   + +++ A+I G   +G+    +  F  M+   + P+ +T   +  A    GL+
Sbjct: 247 FDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVA---SGLL 303

Query: 430 DEGR--KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +    K    ++     +  +   + ++ +    G++ +A  +   M    D + W A+
Sbjct: 304 SDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMD-TRDAMTWTAM 362

Query: 488 FFACRLHG--NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
                 +G  + ++   A M++  + P D  I   LA      ++ +   K+ ++ E +G
Sbjct: 363 ISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSL-DVGVKLHELAESKG 421

Query: 546 VEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
                  S I V   + E   + K   +  +++ C+
Sbjct: 422 F-----ISYIVVTNAILEMYAKSKRIDKAIEVFKCM 452



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 6/213 (2%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           ++++   PD    V     C    A++ G+      +  +    + LG A++ M  + G 
Sbjct: 79  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 138

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
              A +VF +MPER+  ++  ++GG    G   +A+  +  M+  G+ PD  TF  +L +
Sbjct: 139 TWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRS 198

Query: 423 CCHGGLVDE--GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           C  GG+ D   GR+  A +   F    ++   + ++ +  + G +  A ++  SM +  D
Sbjct: 199 C--GGVPDWRMGREVHAHVLR-FGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTV-MD 254

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
            + W A+      +G  + G    + +L  + Q
Sbjct: 255 CISWNAMIAGHFENGECNAGLELFLTMLHDEVQ 287


>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 525

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 279/461 (60%), Gaps = 6/461 (1%)

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           L  AC VF++     +  +N+LI  F+ +   + A+++F  M    ++PD  T+  ++ A
Sbjct: 57  LTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKA 116

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C    D + G+ IH Y S+ GL   + + N+LM MY   G + +A  +FD + +  VVS 
Sbjct: 117 CGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSW 176

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           + MI GYAK G +D AR  FD+ PEK    W A+I GYVQ    KE+L LF  MQ T I 
Sbjct: 177 SVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIV 236

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-NLNVVLGTALVDMYAKCGNIAKALQ 368
           PD    V  LSAC+ LGAL+ G+WIH+ + +     L+V L T+L+DMYAKCGN+  A +
Sbjct: 237 PDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKR 296

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           +F  M  R+ + + A+I G+A+HG    A+  F +M  VG+ PD+ITF+ + +AC + G+
Sbjct: 297 LFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGM 356

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM----AADVVVW 484
             EG     +M S++ + PK +HY C+VDLL R+GL EEA  +IR +      + + + W
Sbjct: 357 AYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAW 416

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
            A   AC  HG   + E AA K+L+LD    SG+YVLL+N+Y  S    +A +VR MM+ 
Sbjct: 417 RAFLSACCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKI 476

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +G  K PGCSS+E++G++ EFI  +K+HP++E+I+  L ++
Sbjct: 477 KGTNKAPGCSSVEIDGVISEFIAGEKTHPQMEEIHSVLKKM 517



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 211/434 (48%), Gaps = 78/434 (17%)

Query: 4   TGLISHGFAPSRLIAFCAISES--KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           TGL ++ FA SR++AFC+  +   ++L Y  ++   +QNP    +N  I+ FL   K + 
Sbjct: 31  TGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKS 90

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A+ ++ +ML++   +PDN+T P + K C +      G  I G+  KLG   D+YV N+++
Sbjct: 91  ALQVFVKMLQSE-LKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSLM 149

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWN-------------------------------S 150
            ++   GD+  A  VFDE    N+VSW+                               +
Sbjct: 150 AMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGA 209

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I+G+V++   +E++ LFR MQL  + PDE   + ++SACA L  L +G  IH ++++  
Sbjct: 210 MISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLK 269

Query: 211 LT-LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           L  L+V L+ +L+DMY KCG LE A+ +FDSM  + VV    MI G A  G         
Sbjct: 270 LVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHG--------- 320

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                   K AL LF++M+  G+KPD +T +   +ACS  G   
Sbjct: 321 ----------------------DGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAY 358

Query: 330 DGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP-----ERNSLT 380
           +G+ +   ++K     N+V  +     LVD+ ++ G   +A+ +  ++         +L 
Sbjct: 359 EGLML---LDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLA 415

Query: 381 YTAIIGGLALHGKA 394
           + A +     HG+ 
Sbjct: 416 WRAFLSACCNHGET 429


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 181/449 (40%), Positives = 276/449 (61%), Gaps = 10/449 (2%)

Query: 148 WNSLINGFVRSGFPRE---AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           WN +I   V +  P +    I ++  M+   V PD  T   ++ +      L LG+  H 
Sbjct: 26  WNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHA 85

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            I   GL     +  +L++MY  CG L SA  IFD  V+K + +  +++  YAK G ++ 
Sbjct: 86  QILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINH 145

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-----IKPDAVTTVHCL 319
           ARK+FD++PE+ V+ W+ +I GYV   + KEAL LF EMQ        + P+  T    L
Sbjct: 146 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVL 205

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC +LGAL+ G W+H +I+K    +++VLGTAL+DMYAKCG++ +A +VF  +  +  +
Sbjct: 206 SACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDV 265

Query: 380 -TYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFA 437
             Y+A+I  LA++G   +    FSEM     + P+ +TF+GIL AC H GL+++G+ YF 
Sbjct: 266 KAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFK 325

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M+  F ++P ++HY CMVDL GRSGL++EAE  I SMPM  DV++WG+L    R+ G++
Sbjct: 326 MMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDI 385

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
              E A  +L+ELDP +SG YVLL+N+Y  +  W E  ++R  ME +G++K PGCS +EV
Sbjct: 386 KTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEV 445

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            G+++EF+V D+S  E E+IY  L ++ +
Sbjct: 446 EGVVHEFVVGDESQQESERIYAMLEEIMQ 474



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 177/393 (45%), Gaps = 75/393 (19%)

Query: 43  SFSWNVAIRGFLET---GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           SF WN+ IR  +      +    + +Y +M R+    PD  T+P L     +     LG 
Sbjct: 23  SFVWNIIIRAIVHNVSPPQRHSPISVYFRM-RHHCVSPDFHTFPFLLPSFHNPIHLPLGQ 81

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS--------- 150
                +L  G D D +V  ++++++ SCGDL  A  +FDES  ++L +WNS         
Sbjct: 82  RTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAG 141

Query: 151 ----------------------LINGFVRSGFPREAIRLFRDMQLER-----VEPDEVTM 183
                                 LING+V  G  +EA+ LFR+MQL +     V P++ TM
Sbjct: 142 LINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTM 201

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-V 242
             ++SAC +L  L  G+ +H YI + G+ + + L  AL+DMY KCG LE A+ +FD++  
Sbjct: 202 STVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGS 261

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K V + + MI   A +G  D                               E   +F E
Sbjct: 262 KKDVKAYSAMICCLAMYGLTD-------------------------------ECFQVFSE 290

Query: 303 MQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKC 360
           M  +  I P++VT V  L AC   G ++ G    + + +E     ++     +VD+Y + 
Sbjct: 291 MTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRS 350

Query: 361 GNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           G I +A      MP E + L + +++ G  + G
Sbjct: 351 GLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 383



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 15/302 (4%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR---- 76
           A +++  +++  K+   +   N  SW+  I G++  GK +EA+DL+++M           
Sbjct: 136 AYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVS 195

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+ FT   +   C  LG    G  +  ++ K G ++D+ +  A+I ++  CG L  A  V
Sbjct: 196 PNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRV 255

Query: 137 FDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLE 194
           FD     +++ +++++I      G   E  ++F +M     + P+ VT +G++ AC    
Sbjct: 256 FDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRG 315

Query: 195 DLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTM 252
            +N G+     ++E  G+T ++     ++D+Y + G ++ AE    SM +   V+   ++
Sbjct: 316 LINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSL 375

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNA-----IIGGYVQAKRSKEALALFHEMQATG 307
           + G    G +         L E  + P N+     +   Y +  R  E   + HEM+  G
Sbjct: 376 LSGSRMLGDIKTCEGALKRLIE--LDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKG 433

Query: 308 IK 309
           IK
Sbjct: 434 IK 435


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 296/549 (53%), Gaps = 32/549 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+L ++   +  S+N  I G+  + +  +A+  + Q+L   G   D  T       CAS+
Sbjct: 338 KVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSF-QLLLKTGLGFDEITLSGALNACASI 396

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G ++ G  +K     ++ V NA++ ++  C  L  A ++FD    R+ VSWN++I
Sbjct: 397 RGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAII 456

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
               ++G   E +  F  M   R+EPD+ T   ++ ACA  + LN G EIH  I +SG+ 
Sbjct: 457 AACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMG 516

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +  AL+DMY KCG +E A+                               KI D  
Sbjct: 517 FDSFVGAALVDMYCKCGMIEKAD-------------------------------KIHDRT 545

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            +K +V WNAII G+   ++S++A   F  M   G+ PD  T    L  C+ L  +  G 
Sbjct: 546 EQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGK 605

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH  I K+    +V + + LVDMY+KCGN+  +  +F + P R+ +T+ A++ G A HG
Sbjct: 606 QIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHG 665

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  F  M  V + P+  TF+ +L AC H GLVD+G  YF  M S + L P+ +HY
Sbjct: 666 LGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHY 725

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           SCMVD+LGRSG ++EA  L++ MP  AD V+W  L   C++HGNV + E+A   LL+LDP
Sbjct: 726 SCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDP 785

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           QDS   VLL+N+Y D+ MW    ++RKMM    ++K PGCS IE+   ++ F+V DK HP
Sbjct: 786 QDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHP 845

Query: 573 ELEQIYDCL 581
             E+IY+ L
Sbjct: 846 RDEEIYEKL 854



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 239/506 (47%), Gaps = 46/506 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++ K LD    +   +   N  SW+  I G ++  +  E ++L+K+M +  G       Y
Sbjct: 227 AKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEM-QGVGVGVSQSIY 285

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             LF+ CA+L    LG E+  H LK  F  D+ V  A + ++  CG +  A  V      
Sbjct: 286 ASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +L S+N++I G+ RS    +A++ F+ +    +  DE+T+ G ++ACA +     GR++
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQV 405

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    +S     + +ANA++DMY KC  L  A ++FD M  +  VS              
Sbjct: 406 HGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVS-------------- 451

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                            WNAII    Q    +E LA F  M  + ++PD  T    L AC
Sbjct: 452 -----------------WNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKAC 494

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           +   AL+ G+ IH  I K     +  +G ALVDMY KCG I KA ++     ++  +++ 
Sbjct: 495 AGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWN 554

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           AII G +L  ++ DA  +FS M+ +G+ PD  T+  +L  C +   V  G++  AQ   I
Sbjct: 555 AIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQ---I 611

Query: 443 FRLSPKLKHYSC--MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
            +   +   Y C  +VD+  + G +++++ +    P   D V W A+      HG   +G
Sbjct: 612 IKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP-NRDFVTWNAMLCGYAHHG---LG 667

Query: 501 ERA-----AMKLLELDPQDSGIYVLL 521
           E A     +M+L+ + P  +    +L
Sbjct: 668 EEALKLFESMQLVNVKPNHATFVSVL 693



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 203/406 (50%), Gaps = 39/406 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+  +N++I  + SCG++ +A   F E   R++VSWNS+I+GF+++G  R++I +F +M 
Sbjct: 114 DVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMG 173

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V  D  ++  ++ AC  LE+ ++G ++H  + + G    V   +AL+ MY KC +L+
Sbjct: 174 RCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLD 233

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
                 DS+                          +F +LPEK  V W+A+I G VQ  R
Sbjct: 234 ------DSL-------------------------SVFSELPEKNWVSWSAMIAGCVQNDR 262

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
           + E L LF EMQ  G+            +C+ L AL  G  +H    K  F  ++++GTA
Sbjct: 263 NVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTA 322

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            +DMYAKCG +A A +V   MP+ +  +Y AII G A   +   A+  F  ++  GL  D
Sbjct: 323 TLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFD 382

Query: 413 EITFLGILSACC--HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           EIT  G L+AC    G L  EGR+          +S  +   + ++D+ G+   L EA  
Sbjct: 383 EITLSGALNACASIRGDL--EGRQVHGLAVKSISMS-NICVANAILDMYGKCKALAEASD 439

Query: 471 LIRSMPMAADVVVWGALFFACRLHGN--VSIGERAAMKLLELDPQD 514
           L   M    D V W A+  AC  +GN   ++   A+M    ++P D
Sbjct: 440 LFDMMER-RDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDD 484



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 163/288 (56%), Gaps = 3/288 (1%)

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           C++   LN G++ H  +   G   T  ++N LM MY+KC  L+ A ++FD M  + VVS 
Sbjct: 59  CSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSY 118

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            ++I GYA  G +DIARK F ++PE+ VV WN++I G++Q    ++++ +F EM   G+ 
Sbjct: 119 NSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVG 178

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D  +    L AC  L   D G+ +H  + K  F+ +VV G+AL+ MYAKC  +  +L V
Sbjct: 179 FDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSV 238

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F E+PE+N ++++A+I G   + + ++ +  F EM GVG+   +  +  +  +C     +
Sbjct: 239 FSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSAL 298

Query: 430 DEGRKYFAQ-MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             G++  +  + S F     +   +  +D+  + G + +A++++ SMP
Sbjct: 299 RLGKELHSHALKSAF--GSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 301/527 (57%), Gaps = 15/527 (2%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           +Y   +L ++  P+SFSW   IR F +     EAV LY QM R     P +       K 
Sbjct: 55  NYAYSMLHHLHIPDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTS-LCPTSHAVSSALKS 113

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           CA +     G  I G V   GF+  +YV  A++ ++   GD+G A  VFDE   +++VSW
Sbjct: 114 CARIHDMLCGMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSW 173

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NSL++G+V++G   EA  LF ++       D ++   M+S  A+  ++     +   + E
Sbjct: 174 NSLLSGYVKAGNLDEAQYLFSEIP----GKDVISWNSMISGYAKAGNVGQACTLFQRMPE 229

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L+      NA++  ++ CG L SA E FD+M  +  VS  TMI GY+K G +D ARK+
Sbjct: 230 RNLSSW----NAMIAGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKL 285

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQLG 326
           FD +  K ++ +NA+I  Y Q  + KEAL LF++M  Q   + PD +T    +SACSQLG
Sbjct: 286 FDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLG 345

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            L+   WI   +      L+  L TAL+D+YAKCG+I KA ++FH + +R+ + Y+A+I 
Sbjct: 346 DLEHWWWIESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIY 405

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G  ++GKA DAI  F +M+   + P+ +T+ G+L+A  H GLV++G + F  M   + L 
Sbjct: 406 GCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKD-YGLV 464

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P + HY  MVDL GR+G L+EA +LI +MPM  +  VWGAL  ACRLH NV +GE A   
Sbjct: 465 PSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQH 524

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
            ++L+   +G   LL+++Y     W++A K+RK ME +      GCS
Sbjct: 525 CIKLETDTTGYCSLLSSIYATVEKWDDAKKLRKGMEGKDF---TGCS 568



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 109/220 (49%), Gaps = 1/220 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG-GTRPDNFT 81
           S+  ++D   K+   + + +  S+N  I  + +  K +EA++L+  ML+      PD  T
Sbjct: 274 SKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMT 333

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              +   C+ LG     + I  H+   G  +D ++  A+I ++  CG +  A  +F    
Sbjct: 334 LASVISACSQLGDLEHWWWIESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYELFHNLR 393

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            R+LV+++++I G   +G   +AI+LF  M  E + P+ VT  G+++A      +  G +
Sbjct: 394 KRDLVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQ 453

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
               + + GL  ++     ++D++ + G L+ A ++  +M
Sbjct: 454 CFNSMKDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNM 493


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 315/594 (53%), Gaps = 55/594 (9%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL  + +     I  CA      +    ++      PN  +WN   RG+ +     + V 
Sbjct: 49  GLEGNDYVTPSFITACA--RLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVV 106

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M R G + P+ FT+P++ K CA+      G E+   V K GF  + +V  A+IH++
Sbjct: 107 LFARMHRAGAS-PNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMY 165

Query: 125 VSCGDLGLA--CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
              G + +A    VF E   +N+ +W +++   V            RDM   R       
Sbjct: 166 SLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVAC----------RDMVSAR------- 208

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
                    +L DL   R+             V L N ++  Y++ G + +A E+FD M 
Sbjct: 209 ---------RLFDLAPQRD-------------VVLWNVVVSGYIELGDMVAARELFDRMP 246

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           ++ V+S  T++ GYA  G ++   K+F+++P + V  WN +IGGYV+    KEAL  F  
Sbjct: 247 DRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKR 306

Query: 303 M----QATG-------IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           M    +  G       + P+  T V  L+ACS+LG L+ G W+H + E   +  N+ +G 
Sbjct: 307 MLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGN 366

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DMYAKCG I KAL VF  +  ++ +T+  II GLA+HG   DA+S F  M   G  P
Sbjct: 367 ALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERP 426

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D +TF+GILSAC H GLV  G  +F  M   + + P+++HY CMVDLLGR+GL+++A  +
Sbjct: 427 DGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDI 486

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           +R MPM  D V+W AL  ACR++ NV + E A  +L+EL+P + G +V+++N+Y+D    
Sbjct: 487 VRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRS 546

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           ++  +++  M + G  K PGCS I  N  + EF   D+ HPE + IY  L  LT
Sbjct: 547 QDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLT 600


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 317/587 (54%), Gaps = 44/587 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N   WN  IR  +  G   EA+ LY +M RN G   D FT+PLL +  ++LG   +   +
Sbjct: 103 NFLLWNSIIRANVYHGYCIEALQLYGKM-RNYGVLGDGFTFPLLLRASSNLGAFNMCKNL 161

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             HV++ GF   ++V N +I ++     +  A  VFD+  ++++VSWN++++G+  +   
Sbjct: 162 HCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDV 221

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSA-------------------------------- 189
             A R+F  M+LE VEP+ VT   ++S+                                
Sbjct: 222 NGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVV 281

Query: 190 ---CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
              CA L  LN G+ IH Y+ + G    +   NAL+ +Y K G +  AE++F  M  K +
Sbjct: 282 LSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNL 341

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDL------PE--KYVVPWNAIIGGYVQAKRSKEALA 298
           VS   +I  +A+ G  D A ++   L      PE    V+ W+AII G+      +E+L 
Sbjct: 342 VSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLE 401

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           +F +MQ   +K ++VT    LS C+ L AL+ G  +H  + +   + NV++G  L++MY 
Sbjct: 402 VFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYT 461

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG+      VF ++  R+S+++ ++I G   HG   DA++ F+ MI  G  PD +TF+ 
Sbjct: 462 KCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIA 521

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
            LSAC H GLV EG   F+QM   F++ P+++HY+CMVDLLGR+GL+EEA  +I+ MPM 
Sbjct: 522 ALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPME 581

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            +  +W +L  +CR+H +  + E AA K+  L+ + +G ++LL+N++  S  WE++ +VR
Sbjct: 582 PNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVR 641

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
                +G++K PG S IEV   +Y F         LE++ + L  L 
Sbjct: 642 ISARAKGLKKVPGWSWIEVKKKVYMFKAGYTISEGLEKVDEILHDLA 688



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 179/393 (45%), Gaps = 75/393 (19%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           PN  +W   +      G + E + L+ +M R  G  P      ++  VCA L     G  
Sbjct: 238 PNPVTWTSLLSSHARCGHLEETMVLFCKM-RMKGVGPTAEMLAVVLSVCADLATLNSGQM 296

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG- 159
           I G+++K GF+  ++  NA+I ++   G +G A  +F E  V+NLVSWN+LI+ F  SG 
Sbjct: 297 IHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGV 356

Query: 160 ----------------FP----------------------REAIRLFRDMQLERVEPDEV 181
                           +P                       E++ +FR MQL  V+ + V
Sbjct: 357 YDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSV 416

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+  ++S CA L  LNLGRE+H ++  + +   V + N L++MY KCG  +    +F+ +
Sbjct: 417 TIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKL 476

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
            N+  +S  +MI GY   G                                 K+ALA F+
Sbjct: 477 ENRDSISWNSMIAGYGTHGL-------------------------------GKDALATFN 505

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAK 359
            M  +G +PD VT +  LSACS  G + +G W+   + ++NF +   +     +VD+  +
Sbjct: 506 HMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQM-RQNFKIEPEIEHYACMVDLLGR 564

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            G + +A  +   MP E N+  +++++    +H
Sbjct: 565 AGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMH 597



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 169/336 (50%), Gaps = 11/336 (3%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
           +V   ++ ++   G +  A  VF  +   C  N + WNS+I   V  G+  EA++L+  M
Sbjct: 71  FVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKM 130

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           +   V  D  T   ++ A + L   N+ + +H ++ + G    + + N L+ MY K  ++
Sbjct: 131 RNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERM 190

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGY 287
           + A ++FD M  K+VVS  TM+ GYA    ++ A ++F  +  + V P    W +++  +
Sbjct: 191 DDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSH 250

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
            +    +E + LF +M+  G+ P A      LS C+ L  L+ G  IH ++ K  FN  +
Sbjct: 251 ARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYL 310

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG---KALDAISYFSEM 404
               AL+ +Y K G +  A ++FHEM  +N +++ A+I   A  G   KAL+ +S   +M
Sbjct: 311 FAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKM 370

Query: 405 IGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQM 439
                M P+ IT+  I+      GL +E  + F +M
Sbjct: 371 EAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 289/504 (57%), Gaps = 40/504 (7%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++  + S  D+  A  VFDE   RN++  N +I  +V +GF  E +++F  M    V PD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++ AC+    + +GR+IH   ++ GL+ T+ + N L+ MY KCG L  A  + D
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIA---------------------------------- 265
            M  + VVS  +++VGYA+    D A                                  
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 266 ---RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
              + +F  + +K +V WN +IG Y++     EA+ L+  M+A G +PDAV+    L AC
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
               AL  G  IH +IE++    N++L  AL+DMYAKCG + KA  VF  M  R+ +++T
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I      G+  DA++ FS++   GL+PD I F+  L+AC H GL++EGR  F  M+  
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           ++++P+L+H +CMVDLLGR+G ++EA + I+ M M  +  VWGAL  ACR+H +  IG  
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA KL +L P+ SG YVLL+N+Y  +  WEE   +R +M+ +G++K PG S++EVN +++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 563 EFIVRDKSHPELEQIY---DCLVQ 583
            F+V D+SHP+ ++IY   D LV+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVK 583



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 154/387 (39%), Gaps = 53/387 (13%)

Query: 171 MQLERVEPDE-VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           ++L++  P E V ++G V       D+   R +H  I    L     L   LM  Y    
Sbjct: 31  LELDQKSPQETVFLLGQV--LDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLK 88

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            + SA ++FD +  + V+    MI  Y   GF                            
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYG-------------------------- 122

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
                E + +F  M    ++PD  T    L ACS  G +  G  IH    K   +  + +
Sbjct: 123 -----EGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           G  LV MY KCG +++A  V  EM  R+ +++ +++ G A + +  DA+    EM  V +
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEA 468
             D  T   +L A        E   Y   M   F++  K L  ++ M+ +  ++ +  EA
Sbjct: 238 SHDAGTMASLLPAV--SNTTTENVMYVKDM--FFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 469 EQLIRSMP---MAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQDSGIYVLLAN 523
            +L   M       D V   ++  AC     +S+G++    ++  +L P      +LL N
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN-----LLLEN 348

Query: 524 ----MYRDSNMWEEAGKVRKMMEERGV 546
               MY      E+A  V + M+ R V
Sbjct: 349 ALIDMYAKCGCLEKARDVFENMKSRDV 375


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 183/584 (31%), Positives = 309/584 (52%), Gaps = 30/584 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG------------------- 73
           ++   ++ P+ FSWN  I G+ +  +M  A+D ++QM                       
Sbjct: 49  QVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQ 108

Query: 74  -----------GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
                      G +P++ TY  +   CA++     G  +   ++++   +D+ V N ++ 
Sbjct: 109 SLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVD 168

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG +  +  VF+     N+V+W SLI+G    G   E   +F  M+ + V  D   
Sbjct: 169 MYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFI 228

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           +  ++  C    ++++G ++H +  ++G+  +VP+ NA + MY KCG  E A   F++M 
Sbjct: 229 LATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMA 288

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
              V+S TTMI  ++  G ++ AR  F+ +PE+ V+ WNA++G Y Q    +E L L+  
Sbjct: 289 AHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYIL 348

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M    ++PD +T V  + ACS+L     G  I     K     +V +  + + +Y++CG 
Sbjct: 349 MLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGR 408

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I +A  +F  + E+N +++ +I+GG A +G+ +  I  F  M+  G  PD IT++ ILS 
Sbjct: 409 IEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSG 468

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLV E + +F  M+  F +S  L+H+ CMVDL GR+GLL+ A  +I  MP   +  
Sbjct: 469 CSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNAS 528

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +WGAL  ACR+H +  + E A   LLEL+ ++   Y+LLAN Y      E   +VR++M+
Sbjct: 529 IWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMK 588

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           E+ V+K PGCS IEV   ++ F   D SHP+++ IY  L  + +
Sbjct: 589 EKRVQKDPGCSWIEVCNRVHVFTANDTSHPQVKDIYKALEDIVK 632



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 204/484 (42%), Gaps = 102/484 (21%)

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG-------------------- 128
           C+S+G   + +++ G   K GF  +  + N++I +++ C                     
Sbjct: 3   CSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSW 62

Query: 129 -----------DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
                      ++G A + F +   R+ VSWN++I+ F   G   +++  F +M ++  +
Sbjct: 63  NCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQ 122

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+ +T   ++SACA + D   G+ +H  I      L V + N L+DMY KCG +++++ +
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRV 182

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F+++    VV+ T++I G A FG                                 +E  
Sbjct: 183 FNTLREHNVVTWTSLISGIAHFG-------------------------------SQEEVY 211

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F++M+   +  D       L  C     +  G  +H F  K   N +V +G A + MY
Sbjct: 212 DIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMY 271

Query: 358 AKC-------------------------------GNIAKALQVFHEMPERNSLTYTAIIG 386
           AKC                               GN+ +A   F+ MPERN +++ A++G
Sbjct: 272 AKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLG 331

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
               +    + +  +  M+   + PD ITF+ ++ AC    +   G +  +Q   +  L 
Sbjct: 332 AYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKV-GLG 390

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
             +   +  + L  R G +EEA+ L  S+    +++ W ++     + G    GE   MK
Sbjct: 391 SDVSVVNSAITLYSRCGRIEEAQNLFDSIQ-EKNLISWNSI-----MGGYAQNGE--GMK 442

Query: 507 LLEL 510
           ++E+
Sbjct: 443 VIEI 446



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 173/398 (43%), Gaps = 67/398 (16%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++   ++  N  +W   I G    G   E  D++ QM R      DNF    +  
Sbjct: 176 IDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQM-RKDCVIMDNFILATILG 234

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC------------- 134
           VC       +G ++ G  +K G +  + V NA + ++  CGD   A              
Sbjct: 235 VCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVIS 294

Query: 135 ------------------NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                             + F+    RN++SWN+++  + ++ F  E ++L+  M  + V
Sbjct: 295 WTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEV 354

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            PD +T + M+ AC++L    LG +I     + GL   V + N+ + +Y +CG++E A+ 
Sbjct: 355 RPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQN 414

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FDS+  K ++S                               WN+I+GGY Q     + 
Sbjct: 415 LFDSIQEKNLIS-------------------------------WNSIMGGYAQNGEGMKV 443

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TALV 354
           + +F  M   G KPD +T +  LS CS  G + +  +    + K+ F ++V L     +V
Sbjct: 444 IEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKD-FGISVTLEHFVCMV 502

Query: 355 DMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
           D++ + G +  AL +  +MP + N+  + A++    +H
Sbjct: 503 DLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIH 540



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 19/365 (5%)

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           AC+ +  + +  ++H    + G      + N+++DMY+KC  + +AE++F  +   ++ S
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              MI GY+K   +  A   F  +PE+  V WN II  +       ++L  F EM   G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +P+++T    LSAC+ +     G  +H R +  E F L+V++G  LVDMYAKCG I  + 
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPF-LDVLVGNGLVDMYAKCGLIDASK 180

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF+ + E N +T+T++I G+A  G   +    F +M    ++ D      IL  C    
Sbjct: 181 RVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVC---- 236

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCM------VDLLGRSGLLEEAEQLIRSMPMAADV 481
              EG    +    +   + K    S +      + +  + G  E+A     +M  A DV
Sbjct: 237 ---EGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMA-AHDV 292

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
           + W  +  +    GNV   ERA      +  ++   +  +   Y  ++ WEE  K+  +M
Sbjct: 293 ISWTTMITSFSHSGNV---ERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILM 349

Query: 542 EERGV 546
             + V
Sbjct: 350 LRQEV 354



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           + S S N++        +   N  SWN  +  + +     E + LY  MLR    RPD  
Sbjct: 301 SFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQ-EVRPDWI 359

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+  +   C+ L +  LG +I    +K+G   D+ V N+ I ++  CG +  A N+FD  
Sbjct: 360 TFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSI 419

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +NL+SWNS++ G+ ++G   + I +F++M +   +PD +T I ++S C+      L +
Sbjct: 420 QEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSH---SGLVK 476

Query: 201 EIHWYIS----ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           E  ++ +    + G+++T+     ++D++ + G L+ A ++ D M
Sbjct: 477 EAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQM 521


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 213/635 (33%), Positives = 322/635 (50%), Gaps = 94/635 (14%)

Query: 3   ITGLISHGFAPSRLI---AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           ITGL  H  A ++LI   A   I ES       ++      P+SF W V I+ ++  G  
Sbjct: 373 ITGLHRHPPASTKLIESYAQIGIFESSK-----RVFDTFPKPDSFMWGVLIKCYVWGGFF 427

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVC--------------ASLGLRFL-------- 97
            EAV LY +M+    T+  NF +P + K C              AS GL           
Sbjct: 428 EEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAV 487

Query: 98  ------------------------------GYEIFGHVLKLGFDVDM-YVHNAVIHVFVS 126
                                         G  + G V++   D ++ ++  A++ ++  
Sbjct: 488 EPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYAD 547

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
            G+L     VF+    + ++SWN+LI+ F R+G P EA+ LF  MQ + + PD  ++   
Sbjct: 548 TGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASS 607

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
           +SAC  +    LG +IH YI ++G      + NAL+DMY KCG                 
Sbjct: 608 LSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCG----------------- 649

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
                         F+  A K+F+ + EK +V WN++I G+ Q   S EA+ LF +M   
Sbjct: 650 --------------FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMN 695

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
            +K D +T +  + ACS LG L+ G W+H  +       +  L TAL DMY+KCG +  A
Sbjct: 696 CVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMA 755

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
             VF  M ER+ ++++ +I G  +HG+    IS F++M+G G+ P++ITF+ ILSAC H 
Sbjct: 756 HGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHA 815

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G V+EG+ YF  MS  F + PK  H++CMVDLL R+G L  A Q+I S+P  A+  +WGA
Sbjct: 816 GAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGA 874

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L   CR+H  + I +     LL++D  D+G Y LL+N+Y +   W++ GKVR MM+ +G+
Sbjct: 875 LLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGL 934

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
            K PG S+IE++  +Y F   D SH + + IY  L
Sbjct: 935 RKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFL 969



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 174/405 (42%), Gaps = 62/405 (15%)

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H ++  +GL    P +  L++ Y + G  ES++ +FD+           +I  Y   G
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425

Query: 261 FLDIARKIFDDLP-------EKYVVP---------WNAIIGGYVQAKRSKEALALFHEMQ 304
           F + A  ++ ++          +V P          +  +GG  +  ++ E L +F +M 
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGG--KNGQASEGLDMFSQMI 483

Query: 305 ATGIKPDAVTTVHCLSACSQLGAL--------DDGIWIHRFIEKENFNLNV-VLGTALVD 355
           +  ++PD+VT +    ACS+LG+L         +G  +H F+ +   +  +  LG AL++
Sbjct: 484 SEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 543

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD--- 412
           +YA  GN+    +VF  + E+  L++  +I     +G+  +A+  F +M   GLMPD   
Sbjct: 544 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 603

Query: 413 ---------EITFLGILSACCHGGLVDEGR-KYFAQ------------MSSIFRLSPKLK 450
                     I+F   L A  HG ++  G    F Q            + S  ++  K+K
Sbjct: 604 LASSLSACGTISF-SQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIK 662

Query: 451 H-----YSCMVDLLGRSGLLEEAEQLIRSMPM---AADVVVWGALFFACRLHGNVSIGER 502
                 ++ M+    ++G   EA  L   M M     D + + ++  AC   G +  G+ 
Sbjct: 663 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 722

Query: 503 AAMKLLELD-PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
              KL+     +DS +   L +MY      + A  V   M ER +
Sbjct: 723 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 767


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 289/504 (57%), Gaps = 40/504 (7%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++  + S  D+  A  VFDE   RN++  N +I  +V +GF  E +++F  M    V PD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++ AC+    + +GR+IH   ++ GL+ T+ + N L+ MY KCG L  A  + D
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIA---------------------------------- 265
            M  + VVS  +++VGYA+    D A                                  
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 266 ---RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
              + +F  + +K +V WN +IG Y++     EA+ L+  M+A G +PDAV+    L AC
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
               AL  G  IH +IE++    N++L  AL+DMYAKCG + KA  VF  M  R+ +++T
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I      G+  DA++ FS++   GL+PD I F+  L+AC H GL++EGR  F  M+  
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           ++++P+L+H +CMVDLLGR+G ++EA + I+ M M  +  VWGAL  ACR+H +  IG  
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA KL +L P+ SG YVLL+N+Y  +  WEE   +R +M+ +G++K PG S++EVN +++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 563 EFIVRDKSHPELEQIY---DCLVQ 583
            F+V D+SHP+ ++IY   D LV+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVK 583



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 155/387 (40%), Gaps = 53/387 (13%)

Query: 171 MQLERVEPDE-VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           ++L++  P E V ++G V       D+   R +H  I    L     L   LM  Y    
Sbjct: 31  LELDQKSPQETVFLLGQV--LDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLK 88

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            + SA ++FD +  + V+    MI  Y   GF                            
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYG-------------------------- 122

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
                E + +F  M    ++PD  T    L ACS  G +  G  IH    K   +  + +
Sbjct: 123 -----EGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           G  LV MY KCG +++A  V  EM  R+ +++ +++ G A + +  DA+    EM  V +
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEA 468
             D  T   +L A  +     E   Y   M   F++  K L  ++ M+ +  ++ +  EA
Sbjct: 238 SHDAGTMASLLPAVSN--TTTENVMYVKDM--FFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 469 EQLIRSMP---MAADVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQDSGIYVLLAN 523
            +L   M       D V   ++  AC     +S+G++    ++  +L P      +LL N
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN-----LLLEN 348

Query: 524 ----MYRDSNMWEEAGKVRKMMEERGV 546
               MY      E+A  V + M+ R V
Sbjct: 349 ALIDMYAKCGCLEKARDVFENMKSRDV 375


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 312/579 (53%), Gaps = 43/579 (7%)

Query: 6   LISHGF------APSRLIAFCAISESKNLDYCTKILFNVQNP-NSFSWNVAIRGFLETGK 58
           +I +GF      A S L  +C     ++     + LF + +  +  SWN  + G+ + G 
Sbjct: 172 VIQYGFGSDVALANSMLNVYCKCGRVED----AQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           +RE + L  +M +  G  PD  T+  L    A      +G  + GH+L+ G + D ++  
Sbjct: 228 IREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIET 286

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           ++I +++ CG++  A  +F+    ++++SW ++I+G V++     A+ +FR M   RV P
Sbjct: 287 SLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMP 346

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
              T+  +++ACA+L    LG  +H YI    + L +P  N+L+ MY KCG LE +  +F
Sbjct: 347 STATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVF 406

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D M  + +VS   ++ G+A+ G L                                +AL 
Sbjct: 407 DRMSRRDIVSWNAIVSGHAQNGHL-------------------------------CKALL 435

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF+EM+    +PD++T V  L AC+ +GAL  G WIH F+ K      +++ TALVDMY+
Sbjct: 436 LFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYS 495

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG++  A + F  MP+++ +++++II G   HGK   A+  +S+ +  G+ P+ + +L 
Sbjct: 496 KCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLS 555

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           ILSAC H GLVD+G  +F  M+  F + P+L+H +C+VDLL R+G +EEA    + M   
Sbjct: 556 ILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPK 615

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
             + V G L  ACR  GNV +G+  A +++ L P ++G YV LA+ Y     W+  G+V 
Sbjct: 616 PSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVW 675

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
             M+   ++K PG S IE++G +  F     SHP+ E+I
Sbjct: 676 TQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEI 714



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 241/502 (48%), Gaps = 44/502 (8%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           + G  S  +  + LI F   S+  +     K+   + + N   W   I  +   G+   A
Sbjct: 76  VDGYSSDSYIATSLINF--YSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVA 133

Query: 63  VDLYKQMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
             +Y  M R  G +P + T   LL  V   + L+ L       V++ GF  D+ + N+++
Sbjct: 134 FSMYNIMRRQ-GIQPSSVTMLGLLSGVLELVHLQCL----HACVIQYGFGSDVALANSML 188

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           +V+  CG +  A  +F+    R+++SWNSL++G+ + G  RE ++L   M+ + +EPD+ 
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQ 248

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   +VSA A    L +G+ +H +I  +GL     +  +L+ MY+KCG + SA  IF+ M
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
           ++K V+S T MI G  +    D+A  +F  + +  V+P  A I                 
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIAS--------------- 353

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
                            L+AC++LG+   G  +H +I ++   L++    +LV MYAKCG
Sbjct: 354 ----------------VLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCG 397

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           ++ ++  VF  M  R+ +++ AI+ G A +G    A+  F+EM      PD IT + +L 
Sbjct: 398 HLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQ 457

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G + +G K+     +   L P +   + +VD+  + G L  A++    MP   D+
Sbjct: 458 ACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQ-QDL 515

Query: 482 VVWGALFFACRLHGNVSIGERA 503
           V W ++      HG    GE A
Sbjct: 516 VSWSSIIAGYGSHGK---GETA 534



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 207/448 (46%), Gaps = 37/448 (8%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           NP + S+N  I      G   + +  Y  ML    T PD  T+P L K C SL L   G 
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTD-TPPDAHTFPSLVKACTSLDLFSHGL 68

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
                V+  G+  D Y+  ++I+ +   G    A  VFD    RN+V W ++I  + R+G
Sbjct: 69  SFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAG 128

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A  ++  M+ + ++P  VTM+G++S   +L  L     +H  + + G    V LAN
Sbjct: 129 EHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALAN 185

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +++++Y KCG++E A+ +F+ M  + V+S  +++ GYA+ G +                 
Sbjct: 186 SMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI----------------- 228

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                         +E L L   M+  GI+PD  T    +SA +    L  G  +H  I 
Sbjct: 229 --------------REVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHIL 274

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +     +  + T+L+ MY KCGN+  A ++F  M  ++ +++TA+I GL  +  A  A++
Sbjct: 275 RAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVT 334

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            F  M+   +MP   T   +L+AC   G    G      +    R+   +   + +V + 
Sbjct: 335 VFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQ-RIKLDIPSQNSLVTMY 393

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + G LE++  +   M    D+V W A+
Sbjct: 394 AKCGHLEQSCSVFDRMS-RRDIVSWNAI 420



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 44/284 (15%)

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           AK  FL+ A K            +NAII     A    + L  +  M +T   PDA T  
Sbjct: 4   AKPSFLNPATK-----------SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFP 52

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             + AC+ L     G+  H+ +  + ++ +  + T+L++ Y+K G+   A +VF  M +R
Sbjct: 53  SLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA--------CCHGGL 428
           N + +T +IG     G+   A S ++ M   G+ P  +T LG+LS         C H  +
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACV 172

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +  G                +   + M+++  + G +E+A+ L   M  A DV+ W +L 
Sbjct: 173 IQYG------------FGSDVALANSMLNVYCKCGRVEDAQALFELMD-ARDVISWNSLV 219

Query: 489 FACRLHGNVSIGERAAMKLL--------ELDPQDSGIYVLLANM 524
                 GN+    R  ++LL        E D Q  G  V  A M
Sbjct: 220 SGYAQLGNI----REVLQLLIRMKTDGIEPDQQTFGSLVSAAAM 259


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 287/497 (57%), Gaps = 11/497 (2%)

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            + CAS   R L   +  H ++L      Y+   ++H+  + G +  A  VF +    NL
Sbjct: 20  LRACASF--RDL-LRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNL 76

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEP-------DEVTMIGMVSACAQLEDLNL 198
              N++I  + ++    +AI ++  M   R  P       D  T   ++ AC  L  L+L
Sbjct: 77  HLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDL 136

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+++H ++  SG      + N+L++MY + G L  A ++FD M  + VVS  T+I  +A+
Sbjct: 137 GKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHAR 196

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G +  AR +F+ +P+K VV W A++ GY  A     A+  F  MQ  G +PD V+ V  
Sbjct: 197 LGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAV 256

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L AC+QLGAL+ G WI+ +  +        +  ALV+MYAKCG I +ALQ+F+ M E++ 
Sbjct: 257 LPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDV 316

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFA 437
           ++++ ++GGLA HG+A +A+  F+EM   G + P+ ITF+G+LSAC H GL+DEG  YF 
Sbjct: 317 ISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFD 376

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
           +M+ ++ + P ++HY C+VDLL RSG ++    LI  MP+ AD  +WG++  ACR HG+V
Sbjct: 377 RMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDV 436

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
                AA +L+ L+P+D G  V+LAN+Y  +  W E    RK +  R + KTPGCS IEV
Sbjct: 437 DTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEV 496

Query: 558 NGLLYEFIVRDKSHPEL 574
           + ++ EF+  +   PE 
Sbjct: 497 DNVVQEFVAGEDLKPEF 513



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 205/432 (47%), Gaps = 73/432 (16%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN------GGTRPDNFTYP 83
           + T++   V+ PN    N  I+ + +  +  +A+ +Y +MLR         T  D FTYP
Sbjct: 63  HATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYP 122

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            L K C  L    LG ++ GHV++ G + +  V N++I ++   GDL LA  VFD    R
Sbjct: 123 FLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQER 182

Query: 144 NLVSWNSLINGFVRSGFPRE-------------------------------AIRLFRDMQ 172
           ++VSWN++I+   R G  R+                               A+  FR MQ
Sbjct: 183 DVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQ 242

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E  EPD+V+++ ++ ACAQL  L LGR I+ Y +   +     + NAL++MY KCG ++
Sbjct: 243 MEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCID 302

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A ++F+ M  K V+S +TM+ G A  G                               R
Sbjct: 303 QALQLFNGMAEKDVISWSTMVGGLAAHG-------------------------------R 331

Query: 293 SKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLG 350
           ++EA+ LF EM+  G +KP+ +T V  LSACS  G LD+G+ +  R  +       V   
Sbjct: 332 AQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHY 391

Query: 351 TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             +VD+  + G I + L +  +MP   ++  + +++     HG    A+     +  V L
Sbjct: 392 GCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERL--VAL 449

Query: 410 MPDEITFLGILS 421
            P+++  L +L+
Sbjct: 450 EPEDVGNLVMLA 461



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 127/298 (42%), Gaps = 39/298 (13%)

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
           AT    DAV     L AC+   +  D + +H    + + + +  L T +V +    G +A
Sbjct: 8   ATRQVEDAVMA--SLRACA---SFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVA 62

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP-------DEITFL 417
            A +VF ++ E N   + A+I   A + + LDAI+ +  M+     P       D  T+ 
Sbjct: 63  HATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYP 122

Query: 418 GILSACCHGGL--VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
            +L AC  GGL  +D G++    +      S  +   S ++++  R+G L  A ++   M
Sbjct: 123 FLLKAC--GGLMALDLGKQVHGHVVRSGCESNAIVQNS-LIEMYTRAGDLVLARKVFDGM 179

Query: 476 PMAADVVVWGALFFACRLHGNVSIGE-RAAMKLLELDPQDSGI-YVLLANMYRDSNMWEE 533
               DVV W  +  A     +  +G+ R A  +    P  + + +  L + Y  +  +  
Sbjct: 180 -QERDVVSWNTVISA-----HARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSG 233

Query: 534 AGKVRKMMEERGVEKT--------PGCS---SIEVNGLLYEFIVRDKSHPELEQIYDC 580
           A +  ++M+  G E          P C+   ++E+   +Y +  R   H  L + Y C
Sbjct: 234 AVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNR---HQMLRETYVC 288



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++   +   +  SW+  + G    G+ +EAV L+ +M R G  +P+  T+  L  
Sbjct: 301 IDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLS 360

Query: 88  VCASLGLRFLGYEIF 102
            C+  GL   G + F
Sbjct: 361 ACSHAGLLDEGLDYF 375


>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 211/613 (34%), Positives = 326/613 (53%), Gaps = 66/613 (10%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
             L +H    +++  F A+S +  L Y  ++   +  PN+F +N  IRG+ ++    ++V
Sbjct: 113 ANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSV 172

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFK----VCASLGLRFLGYEIFGHVLKLGFDVDMY---- 115
            L+ QM RN    PD FT+  L K    +   L L     EI G     G D D Y    
Sbjct: 173 QLFNQMRRNC-VDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHG----AGVDYDKYKTLK 227

Query: 116 --VHNAVIHVFVSC---------------------------------------------- 127
             + N V+H+  +                                               
Sbjct: 228 SYISNKVMHMLPTSQSLASMAEACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSP 287

Query: 128 -GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
            G L  A  +F +    N   +N+LI G+ +S  P ++++LF  M+   V+PD  T   +
Sbjct: 288 NGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFL 347

Query: 187 VSACAQLE-DLNL---GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           +   +++  DL L     EIH  + + G    + + NAL+ +Y   G   +A ++F+ MV
Sbjct: 348 LKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMV 407

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
              VVS + ++V + + G L++AR++FD++PE+ VV W  ++ GY QAKRS+EAL LF E
Sbjct: 408 GADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFRE 467

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+  G++PD V  V  +SAC+ LG L+ G  +HR+I++  F   V L  AL+DMYAKCG 
Sbjct: 468 MRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGC 527

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  A QVF+ M  ++ +T+ ++I   A HG A DA   F+ M+  G+ PD +TFL +L+A
Sbjct: 528 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTA 587

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
             H G VD+G   F  M   + +   ++HY CMVD+LGR+G LEEA +LI SM M  + V
Sbjct: 588 YTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDV 647

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           VWGAL  ACR++G+V +GER   KL+EL P + G Y+LL ++Y  +    EA ++R+ M+
Sbjct: 648 VWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMD 707

Query: 543 ERGVEKTPGCSSI 555
             G +KT GCS +
Sbjct: 708 VNGAKKTLGCSWV 720



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 83/459 (18%), Positives = 174/459 (37%), Gaps = 83/459 (18%)

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           + ++   RE + LFR+++  RV P +V  +G+        D +  + +  YIS   + + 
Sbjct: 33  YAQAKRSREPLELFREIRDVRVRPTDVVTMGV--------DYDKYKTLKSYISNKVMHM- 83

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF------GFLDIARKI 268
           +P + +L  M   C  +++ + I        + +   ++    +F      G L  A ++
Sbjct: 84  LPTSQSLASMAEACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRL 143

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG-- 326
           F  + +     +N +I GY ++    +++ LF++M+   + PD  T    L   S++   
Sbjct: 144 FSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRID 203

Query: 327 -----ALDD----GIWIHRFIEKENFNLNVVL-----GTALVDMYAKC------------ 360
                A D+    G+   ++   +++  N V+       +L  M   C            
Sbjct: 204 LPLIVASDEIHGAGVDYDKYKTLKSYISNKVMHMLPTSQSLASMAEACLAMQALKLIHAR 263

Query: 361 -------------------------GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
                                    G +  A ++F ++ + N+  Y  +I G +      
Sbjct: 264 AFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPS 323

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGL-------VDEGRKYFAQMSSIFRLSPK 448
            ++  F++M    + PD  TF  +L       +        DE      ++   F L   
Sbjct: 324 QSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFV- 382

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
               + ++ L    G+   A Q+   M + ADVV W  L  A    G + +  +      
Sbjct: 383 ---MNALIHLYAARGVPAAAHQVFNEM-VGADVVSWSGLVVAHVRAGELELARQV---FD 435

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           E+  +D   + ++ + Y  +    EA ++ + M + GV 
Sbjct: 436 EMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVR 474


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 182/442 (41%), Positives = 265/442 (59%), Gaps = 32/442 (7%)

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
           +V P   T   +V AC+ + +L  G  +H +I + G    V +  AL+D Y   GK+  A
Sbjct: 5   QVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEA 64

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV------ 288
             +FD M  + V + TTMI  +A+ G +  AR++FD++P +    WNA+I GY       
Sbjct: 65  RRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVE 124

Query: 289 -------------------------QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
                                    Q K+ +EALA+F+EMQ  GI PD VT    +SAC+
Sbjct: 125 SAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACA 184

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LGALD G  IH +  +  F+L+V +G+AL+DMYAKCG++ K+L VF ++ ++N   + +
Sbjct: 185 HLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNS 244

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           II GLA+HG A +A++ FS M    + P+ +TF+ +L AC H GLV+EGRK F  MS  F
Sbjct: 245 IIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDF 304

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + P+++HY CMVDLLG++GLLE+A +L+RSM M  + V+WGAL   C+LH N+ I + A
Sbjct: 305 SIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVA 364

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT-PGCSSIEVNGLLY 562
             +   L+P +SG Y LL NMY + N W E   +R  M+E GVEKT PG S IE++  ++
Sbjct: 365 VNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIH 424

Query: 563 EFIVRDKSHPELEQIYDCLVQL 584
           +F   DKSH   ++IY  LV+L
Sbjct: 425 QFAASDKSHLASDEIYTLLVEL 446



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 173/381 (45%), Gaps = 99/381 (25%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV---------------- 120
           P +FT+  L K C+ +     G  + GH+ K GFD  ++V  A+                
Sbjct: 8   PTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRV 67

Query: 121 ---------------IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR-------- 157
                          I V    GD+  A  +FDE  VRN  SWN++I+G+ R        
Sbjct: 68  FDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAE 127

Query: 158 ---SGFP--------------------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
              S  P                    REA+ +F +MQ   ++PDEVTM  ++SACA L 
Sbjct: 128 LLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLG 187

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L+LG+EIH Y  E G  L V + +AL+DMY KCG L           +K++V       
Sbjct: 188 ALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSL-----------DKSLV------- 229

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                        +F  L +K +  WN+II G      ++EALA+F  MQ   IKP+ VT
Sbjct: 230 -------------VFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVT 276

Query: 315 TVHCLSACSQLGALDDGIWIHRFIE-KENFNL--NVVLGTALVDMYAKCGNIAKALQVFH 371
            +  L AC+  G +++G    RF+    +F++   +     +VD+  K G +  AL++  
Sbjct: 277 FISVLGACTHAGLVEEG--RKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVR 334

Query: 372 EMP-ERNSLTYTAIIGGLALH 391
            M  E NS+ + A++GG  LH
Sbjct: 335 SMRMEPNSVIWGALLGGCKLH 355



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 2/220 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S  +N++    +   + N +  SW   I  + +  + REA+ ++ +M  NG   PD  T 
Sbjct: 118 SRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNG-IDPDEVTM 176

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA LG   LG EI  + +++GFD+D+Y+ +A+I ++  CG L  +  VF +   
Sbjct: 177 ATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRK 236

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +NL  WNS+I G    G+  EA+ +F  MQ E+++P+ VT I ++ AC     +  GR+ 
Sbjct: 237 KNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKR 296

Query: 203 HWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              +S    +   +     ++D+  K G LE A E+  SM
Sbjct: 297 FLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSM 336


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 181/520 (34%), Positives = 296/520 (56%), Gaps = 5/520 (0%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           M  +G    +N+  P L +V +    + +   I  H    G     ++   ++       
Sbjct: 1   MAFHGIREVENYFIPFLQRVKSRNEWKKINASIIIH----GLSQSSFMVTKMVDFCDKIE 56

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMV 187
           D+  A  +F++    N+  +NS+I  +  +    + IR+++ +  +  E PD  T   M 
Sbjct: 57  DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            +CA L    LG+++H ++ + G    V   NAL+DMY+K   L  A ++FD M  + V+
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S  +++ GYA+ G +  A+ +F  + +K +V W A+I GY       EA+  F EMQ  G
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           I+PD ++ +  L +C+QLG+L+ G WIH + E+  F     +  AL++MY+KCG I++A+
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           Q+F +M  ++ ++++ +I G A HG A  AI  F+EM    + P+ ITFLG+LSAC H G
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVG 356

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +  EG +YF  M   +++ PK++HY C++D+L R+G LE A ++ ++MPM  D  +WG+L
Sbjct: 357 MWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSL 416

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             +CR  GN+ +   A   L+EL+P+D G YVLLAN+Y D   WE+  ++RKM+    ++
Sbjct: 417 LSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMK 476

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           KTPG S IEVN ++ EF+  D S P   +I   L   T H
Sbjct: 477 KTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSH 516



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 206/411 (50%), Gaps = 71/411 (17%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + I GL    F  ++++ FC   + +++DY T++   V NPN F +N  IR +       
Sbjct: 33  IIIHGLSQSSFMVTKMVDFC--DKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYC 90

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + + +YKQ+LR     PD FT+P +FK CASLG  +LG ++ GH+ K G    +   NA+
Sbjct: 91  DVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENAL 150

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR------------------ 162
           I +++   DL  A  VFDE   R+++SWNSL++G+ R G  +                  
Sbjct: 151 IDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWT 210

Query: 163 -------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                        EA+  FR+MQL  +EPDE+++I ++ +CAQL  L LG+ IH Y    
Sbjct: 211 AMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERR 270

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G      + NAL++MY KCG +  A ++F  M  K V+S +TMI GYA  G         
Sbjct: 271 GFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHG--------- 321

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  +  A+  F+EMQ   +KP+ +T +  LSACS +G   
Sbjct: 322 ----------------------NAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQ 359

Query: 330 DGIWIHRFIE--KENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMPER 376
           +G+   R+ +  ++++ +   +     L+D+ A+ G + +A+++   MP +
Sbjct: 360 EGL---RYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK 407


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 291/475 (61%), Gaps = 18/475 (3%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE--AIRLFRDMQL-ERVEPDEVTMIG 185
           DL  A  +F++   RN  SWN++I GF  S   +   AI LF +M   E +EP+  T   
Sbjct: 67  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS----- 240
           ++ ACA+   +  G++IH    + G      + + L+ MYV CG ++ A  +F       
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186

Query: 241 ----MVNK-----TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
               M+++      VV    MI GY + G    AR +FD + ++ VV WN +I GY Q  
Sbjct: 187 EMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNG 246

Query: 292 RSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
             K+A+ +F EM+    I+P+ VT V  L A S+LG+L+ G W+H + E     ++ VLG
Sbjct: 247 FFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLG 306

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           +AL+DMY+KCG I KA+ VF  +P  N +T++A+I G A+HG+A DAI  F +M   G+ 
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P ++ ++ +L+AC H GLV+EGR+YF+QM S+  L P+++HY CMVDLLGR GLL+EAE+
Sbjct: 367 PSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEE 426

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
            I +MP+  D V+W AL  ACR+H NV +G+R A  L+++ P DSG YV L+NMY     
Sbjct: 427 FILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 486

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           W E  ++R  M+E  + K PGCS I+++G+L+EF+V D SHP  ++I   LV+++
Sbjct: 487 WSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEIS 541



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 186/378 (49%), Gaps = 81/378 (21%)

Query: 4   TGLISHGFAPSRLIAFCAISE--SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +G I    A + ++ FCA S+   ++LDY  KI   +   N FSWN  IRGF E+ + + 
Sbjct: 42  SGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKA 101

Query: 62  --AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             A+ L+ +M+ +    P+ FT+P + K CA  G    G +I G  LK GF  D +V + 
Sbjct: 102 LIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSN 161

Query: 120 VIHVFVSCGDLGLAC----------------------------NV--------------- 136
           ++ ++V CG +  AC                            NV               
Sbjct: 162 LVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAAR 221

Query: 137 --FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSACAQL 193
             FD+   R++VSWN++I+G+ ++GF ++A+ +FR+M+  E + P+ VT++ ++ A ++L
Sbjct: 222 MLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRL 281

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L LG  +H Y  +SG+ +   L +AL+DMY KCG +E A  +F+ +  + V++     
Sbjct: 282 GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVIT----- 336

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                                     W+A+I G+    ++ +A+  F +M+  G++P  V
Sbjct: 337 --------------------------WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 370

Query: 314 TTVHCLSACSQLGALDDG 331
             ++ L+ACS  G +++G
Sbjct: 371 AYINLLTACSHAGLVEEG 388



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 1/170 (0%)

Query: 32  TKILFNVQNPNSF-SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            ++LF+     S  SWN  I G+ + G  ++AV+++++M +    RP+  T   +    +
Sbjct: 220 ARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVS 279

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            LG   LG  +  +    G  +D  + +A+I ++  CG +  A  VF+     N+++W++
Sbjct: 280 RLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSA 339

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
           +INGF   G   +AI  F  M+   V P +V  I +++AC+    +  GR
Sbjct: 340 MINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGR 389


>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 184/498 (36%), Positives = 289/498 (58%), Gaps = 13/498 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC-----GDLGLACNVFDESCVRNLVSWNSLING 154
           E    VL  G   D +   A+  +   C     G L  A  +F +     +   N++I  
Sbjct: 23  EAHAQVLTCGLGTDSF---ALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIKA 79

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           FV  G     I+++  M    + PD  T+  ++ ACA L+  +LG   H    + G    
Sbjct: 80  FVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFD 139

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N L+ MY   G + +A  IFD M   T VS T MI GYAK G ++ AR +FD+ P 
Sbjct: 140 IFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPM 199

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K    W +II GYVQ    KE L +F  MQ+TG++PD    V  L AC+ LGA++ G+W+
Sbjct: 200 KDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWV 259

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           HR++++    L+V L T L+DMYAKCG++  A ++F  M +R+++ + A+I G+A++G  
Sbjct: 260 HRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDG 319

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +A+  FSEM   G+ PD+ITF+ I +AC + G+  E  +    M +++ + PK +HY C
Sbjct: 320 DNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGC 379

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAA----DVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           +VDLLGR+GLL+EA++LI  MP ++      + W AL  AC  HG   + E AA +L  L
Sbjct: 380 IVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHL 439

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +   SG YVLL+N+Y  +   +   ++RKMME RGV+K PGCSS+++NG+++EFI  +++
Sbjct: 440 E-HHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVVHEFIAGEET 498

Query: 571 HPELEQIYDCLVQLTRHF 588
           H ++E+++  L ++ +  
Sbjct: 499 HLQMEEVHRVLEKMNKQM 516



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 194/412 (47%), Gaps = 64/412 (15%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL +  FA SRL+AFC+     +L +  K+   +Q+P     N  I+ F+  GK+   + 
Sbjct: 32  GLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQ 91

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           +Y QML NG   PDN+T P + K CA L    LG    G  +KLGF  D++V N +I ++
Sbjct: 92  IYSQMLENG-LYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMY 150

Query: 125 VS-------------------------------CGDLGLACNVFDESCVRNLVSWNSLIN 153
            S                                GD+  A  +FDE+ +++   W S+I+
Sbjct: 151 SSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIIS 210

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G+V++   +E +++FR MQ   +EPDE  ++ ++ ACA L  + +G  +H Y+ + G  L
Sbjct: 211 GYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPL 270

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
           +V L+  L+DMY KCG L+ A+++FD M  +  +    MI G A  G  D          
Sbjct: 271 SVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGD---------- 320

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI- 332
                                 AL LF EM+  G+KPD +T +   +ACS  G   + I 
Sbjct: 321 ---------------------NALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIR 359

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
            ++      N          +VD+  + G + +A ++  +MP  +S T  AI
Sbjct: 360 LLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAI 411


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 176/450 (39%), Positives = 266/450 (59%), Gaps = 2/450 (0%)

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGMV 187
           L  A  + D S    L + NS+I    +S  P ++   +R +      ++PD  T+  +V
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC  L     G ++H      G      +   L+ +Y + G L+S  ++F+S+     V
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
             T M+   A+ G +  ARK+F+ +PE+  + WNA+I GY Q   S+EAL +FH MQ  G
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +K + V  +  LSAC+QLGALD G W H +IE+    + V L T LVD+YAKCG++ KA+
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF  M E+N  T+++ + GLA++G     +  FS M   G+ P+ +TF+ +L  C   G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            VDEG+++F  M + F + P+L+HY C+VDL  R+G LE+A  +I+ MPM     VW +L
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             A R++ N+ +G  A+ K+LEL+  + G YVLL+N+Y DSN W+    VR+ M+ +GV 
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           K PGCS +EVNG ++EF V DKSHP+  QI
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQI 505



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 191/408 (46%), Gaps = 66/408 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + G +         +   A+S+ K LDY  +IL   + P  F+ N  IR   ++    
Sbjct: 29  LYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPE 88

Query: 61  EAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           ++ D Y+++L +G   +PDN+T   L + C  L +R  G ++ G  ++ GFD D +V   
Sbjct: 89  KSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTG 148

Query: 120 VIHVFVS-------------------------------CGDLGLACNVFDESCVRNLVSW 148
           +I ++                                 CGD+  A  +F+    R+ ++W
Sbjct: 149 LISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAW 208

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N++I+G+ + G  REA+ +F  MQLE V+ + V MI ++SAC QL  L+ GR  H YI  
Sbjct: 209 NAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIER 268

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + + +TV LA  L+D+Y KCG +E A E+F  M  K V + ++ + G A  GF       
Sbjct: 269 NKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGF------- 321

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                    ++ L LF  M+  G+ P+AVT V  L  CS +G +
Sbjct: 322 ------------------------GEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFV 357

Query: 329 DDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP 374
           D+G   H    +  F +   L     LVD+YA+ G +  A+ +  +MP
Sbjct: 358 DEG-QRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMP 404


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 176/454 (38%), Positives = 269/454 (59%), Gaps = 4/454 (0%)

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
           ++F++    N   +N+LI G++     +E+   +  M+ E V P   T   +  AC    
Sbjct: 101 SIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKM 160

Query: 195 DLNLGREIH-WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           D+ LGR+IH   I   G    + + N+++DMY+KCG LE   ++FD M N+ V+S T +I
Sbjct: 161 DVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELI 220

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
             Y K G ++ A ++FD LP K +V W  ++ G+ Q  + +EA+  F +MQ  G++ D +
Sbjct: 221 SAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEI 280

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENF--NLNVVLGTALVDMYAKCGNIAKALQVFH 371
           T +  +SAC+QLGA     WI    EK  F    +VV+G+AL+DMY+KCG++  A +VF 
Sbjct: 281 TLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQ 340

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            M ERN  +Y+++I G A+HG+  DA+  F EM+   + P+ +TF+G+L+AC H G+V++
Sbjct: 341 GMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQ 400

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G + F  M   + + P   HY+CMVDLLGR+G L+EA +L+++MP+     VWGAL  AC
Sbjct: 401 GWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGAC 460

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R+H +  I   AA  L EL+P   G Y+LLAN+Y     W +   VRK+M  RG+ K P 
Sbjct: 461 RIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPA 520

Query: 552 CSSIEV-NGLLYEFIVRDKSHPELEQIYDCLVQL 584
            S IE   G+++EF   D +HP   +I   L  L
Sbjct: 521 FSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDL 554



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 187/398 (46%), Gaps = 68/398 (17%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   I   V  PN F +N  IRG+L   +++E+ + Y  ++R  G  P +FT+  LFK C
Sbjct: 98  YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFY-SLMRKEGVVPVSFTFTALFKAC 156

Query: 90  ASLGLRFLGYEIFGH-VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
            +     LG +I G  +L  GF  D++V N++I +++ CG L     VFDE   R+++SW
Sbjct: 157 GAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISW 216

Query: 149 NSLINGFVRSG-------------------------------FPREAIRLFRDMQLERVE 177
             LI+ +V+SG                                PREAI  F  MQ   VE
Sbjct: 217 TELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVE 276

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYI--SESGLTLTVPLANALMDMYVKCGKLESAE 235
            DE+T+IG++SACAQL        I      SE G   +V + +AL+DMY KCG +  A 
Sbjct: 277 TDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +F  M  + V S ++MI+G+A  G +  A K+FD                         
Sbjct: 337 RVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFD------------------------- 371

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALV 354
                 EM  T IKP+ VT +  L+ACS  G ++ G  I   +EK      +    T +V
Sbjct: 372 ------EMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMV 425

Query: 355 DMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           D+  + G + +A ++   MP E +   + A++G   +H
Sbjct: 426 DLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIH 463



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A  +S N++   ++   +   +  +W V + GF +  K REA+  +++M +  G   D  
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKM-QEFGVETDEI 280

Query: 81  TYPLLFKVCASLGLRFLGYEI--FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           T   +   CA LG       I       + G    + V +A+I ++  CG +G A  VF 
Sbjct: 281 TLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQ 340

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
               RN+ S++S+I GF   G   +A++LF +M    ++P+ VT IG+++AC+    +  
Sbjct: 341 GMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQ 400

Query: 199 GREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           G +I   + +  G+  +      ++D+  + G+L+ A E+  +M
Sbjct: 401 GWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTM 444



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           L +F+++   N   Y A+I G  +  +  ++  ++S M   G++P   TF  +  AC   
Sbjct: 100 LSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAK 159

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
             V  GR+   Q   +      L   + M+D+  + G LE   ++   MP   DV+ W  
Sbjct: 160 MDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP-NRDVISWTE 218

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  A    GN+   E A      L  +D   + ++ + +  +    EA    + M+E GV
Sbjct: 219 LISAYVKSGNM---ESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGV 275

Query: 547 E 547
           E
Sbjct: 276 E 276


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 304/554 (54%), Gaps = 36/554 (6%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   V +P++  WN  + G   +    EA++ + +M   G  RPD+ T   +    A +
Sbjct: 179 KVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEV 234

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +G  +     K G     +V   +I ++  CGD+  A ++FD     +LV++N+LI
Sbjct: 235 ANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALI 294

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+  +G    ++ LF+++    + P   T++ ++   +      L   +H ++ ++GL 
Sbjct: 295 SGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLD 354

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
              P++ AL  +Y +                               F  +D AR+ FD +
Sbjct: 355 ANAPVSTALTTLYCR-------------------------------FNDMDSARRAFDAM 383

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           PEK +  WNA+I GY Q   ++ A+ALF +MQA  ++P+ +T    LSAC+QLGAL  G 
Sbjct: 384 PEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGK 443

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           W+H+ I  E   LNV + TAL+DMY KCG+IA+A  +F  M  +N +++  +I G  LHG
Sbjct: 444 WVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHG 503

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
           +  +A+  + +M+   L P   TFL +L AC HGGLV EG   F  M+S + ++P ++H 
Sbjct: 504 QGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHC 563

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           +CMVDLLGR+G L+EA +LI   P +A    +WGAL  AC +H +  + + A+ KL EL+
Sbjct: 564 TCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELE 623

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P+++G YVLL+N+Y     + EA  VR+  + R + KTPGC+ IE+    + F+  D++H
Sbjct: 624 PENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAH 683

Query: 572 PELEQIYDCLVQLT 585
           P+ + IY  L +LT
Sbjct: 684 PQSDAIYLYLEKLT 697


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 311/561 (55%), Gaps = 33/561 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++   +   +  SWN  +  +++ G   EA++   +MLR GG +PD+     L  
Sbjct: 316 VDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR-GGFQPDHACIVSLSS 374

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
               LG    G E+  + +K   D D  V N ++ +++ C  +  + +VFD   +++ +S
Sbjct: 375 AVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHIS 434

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W ++I  + +S    EA+ +FR+ Q E ++ D + +  ++ AC+ LE + L +++H Y  
Sbjct: 435 WTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAI 494

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
            +GL L + + N ++D+Y +CG      E++ S+                         K
Sbjct: 495 RNGL-LDLVVKNRIIDIYGECG------EVYHSL-------------------------K 522

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F+ + +K +V W ++I  Y  +    EAL LF EMQ+T ++PD+V  V  L A   L +
Sbjct: 523 MFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSS 582

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L  G  +H F+ + NF++   + ++LVDMY+ CG+++ AL+VF+ +  ++ + +TA+I  
Sbjct: 583 LAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINA 642

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
             +HG    AI  F  M+  G+ PD ++FL +L AC H  LV+EG+ Y   M S +RL P
Sbjct: 643 TGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEP 702

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HY+C+VDLLGRSG  EEA + I+SMP+    VVW +L  ACR+H N  +   AA +L
Sbjct: 703 WQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRL 762

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           LEL+P + G YVL++N++ +   W  A +VR  + ERG+ K P CS IE+   ++ F  R
Sbjct: 763 LELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTR 822

Query: 568 DKSHPELEQIYDCLVQLTRHF 588
           D SH + E+I   L ++T   
Sbjct: 823 DNSHRDAERINLKLAEITERL 843



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 219/463 (47%), Gaps = 43/463 (9%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG--GTRPDNFTYPLLFKV 88
            ++LF+ + +   FSWN  I  +L +G   EA+ +Y+ M  +   G  PD  T   + K 
Sbjct: 114 ARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA 173

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD-ESCVRNLVS 147
               G    G E+ G  +K G D   +V NA+I ++  CG L  A  VF+     R++ S
Sbjct: 174 SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVAS 233

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WNS+I+G +++G   +A+ LFR MQ   +  +  T +G++  C +L  LNLGRE+H  + 
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG                             S VN   + C  ++V Y K G +D A +
Sbjct: 294 KSG-----------------------------SEVN---IQCNALLVMYTKCGRVDSALR 321

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F ++ EK  + WN+++  YVQ     EA+    EM   G +PD    V   SA   LG 
Sbjct: 322 VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGW 381

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L +G  +H +  K+  + +  +G  L+DMY KC  I  +  VF  M  ++ +++T II  
Sbjct: 382 LLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITC 441

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC--HGGLVDEGRKYFAQMSSIFRL 445
            A   + ++A+  F E    G+  D +    IL AC      L+ +    +A  + +  L
Sbjct: 442 YAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDL 501

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
             K +    ++D+ G  G +  + ++  ++    D+V W ++ 
Sbjct: 502 VVKNR----IIDIYGECGEVYHSLKMFETVEQ-KDIVTWTSMI 539



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 183/395 (46%), Gaps = 38/395 (9%)

Query: 48  VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLK 107
            +++   + G +R+A+ L     +  G  P    Y  +  + A+      G ++  H + 
Sbjct: 29  TSLKQLCKEGNLRQALRLLTS--QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVA 86

Query: 108 LGF--DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            G     D ++   ++ ++  CG +  A  +FD    R + SWN+LI  ++ SG   EA+
Sbjct: 87  TGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEAL 146

Query: 166 RLFRDMQLER---VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
            ++R M+L     V PD  T+  ++ A     D   G E+H    + GL  +  +ANAL+
Sbjct: 147 GVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALI 206

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            MY KCG L+SA  +F+ M +                               + V  WN+
Sbjct: 207 AMYAKCGILDSAMRVFELMHDG------------------------------RDVASWNS 236

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I G +Q     +AL LF  MQ   +  ++ TTV  L  C++L  L+ G  +H  + K  
Sbjct: 237 MISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG 296

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
             +N+     LV MY KCG +  AL+VF E+ E++ +++ +++     +G   +AI + S
Sbjct: 297 SEVNIQCNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFIS 355

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           EM+  G  PD    + + SA  H G +  G++  A
Sbjct: 356 EMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHA 390



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 4/194 (2%)

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ---AT 306
           T ++  Y K G +  AR +FD +  + V  WNA+IG Y+ +  + EAL ++  M+   A+
Sbjct: 99  TKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAAS 158

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           G+ PD  T    L A    G    G  +H    K   + +  +  AL+ MYAKCG +  A
Sbjct: 159 GVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSA 218

Query: 367 LQVFHEMPE-RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           ++VF  M + R+  ++ ++I G   +G  L A+  F  M    L  +  T +G+L  C  
Sbjct: 219 MRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTE 278

Query: 426 GGLVDEGRKYFAQM 439
              ++ GR+  A +
Sbjct: 279 LAQLNLGRELHAAL 292



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM---I 405
           L T L+ MY KCG +A A  +F  M  R   ++ A+IG     G A +A+  +  M    
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGR--KYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
             G+ PD  T   +L A    G+  +GR       ++    L       + ++ +  + G
Sbjct: 157 ASGVAPDGCTLASVLKA---SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCG 213

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +L+ A ++   M    DV  W ++   C  +G
Sbjct: 214 ILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 339/650 (52%), Gaps = 73/650 (11%)

Query: 7    ISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
            I  GF P+     +LI F A  +   L+   K+   +   N FSWN  I  ++++  +R+
Sbjct: 438  IKSGFTPTIFMSNQLITFYA--KHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSQNLRQ 495

Query: 62   AVDL-----------YKQML----RNGG------------------TRPDNFTYPLLFKV 88
            A  L           Y  ML    R+ G                   R D FT   +  +
Sbjct: 496  ARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNL 555

Query: 89   CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD---------- 138
             A L +   G ++   +LK   D+ ++  +++I ++  CG    AC V+           
Sbjct: 556  TAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVS 615

Query: 139  -----ESCVR------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
                  +C R                  ++V+WN++I+GFV++G+  E+++LF  M  E+
Sbjct: 616  RNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEK 675

Query: 176  VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
            V  +E T   ++SAC+ L  L LG+E+H Y+ ++ L     + + L+D+Y KC  +  AE
Sbjct: 676  VGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAE 735

Query: 236  EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
             +   +  + V S T+MIVGY+  G +  ARK+FD L EK  V W A+  GYV+ ++ + 
Sbjct: 736  SVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEA 795

Query: 296  ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
               L  E +     PD +  +  + AC+   AL  G  IH ++ +    L+  L ++LVD
Sbjct: 796  VFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVD 855

Query: 356  MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
            MY+KCG+I  A ++F E+ +++S+ Y  +I G A HG   +A+  F EM+  G  PD IT
Sbjct: 856  MYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAIT 915

Query: 416  FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
            F+ +LSAC HGGLV+ G  +F  MS+ + + P++ HY+CM+DL GR+  L++A + +R +
Sbjct: 916  FVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKI 975

Query: 476  PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
            P+  D V+WGA   ACR++GN  +  +A  +LL ++ ++   YV LAN+Y     WEE G
Sbjct: 976  PIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMG 1035

Query: 536  KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            ++RK M+ + V+K  GCS + V    + FI  D+ H + E IY  L  LT
Sbjct: 1036 RIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASLT 1085



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 158/367 (43%), Gaps = 73/367 (19%)

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
           +++ L  G   H    +SG T T+ ++N L+  Y K G L  A+++FD M  + V S   
Sbjct: 423 EMKHLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNA 482

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK-EALALFHEMQATG--I 308
           +I  Y K   L  AR +FD    K +V +N+++ GY ++   + +AL  F EMQ     I
Sbjct: 483 IIAAYVKSQNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMI 542

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           + D  T +  L+  ++L  +  G  +H F+ K   +L V   ++L+DMY+KCG   +A +
Sbjct: 543 RIDEFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACR 602

Query: 369 VFH---------------------------------EMPERNSLTYTAIIGGLALHGKAL 395
           V++                                 E+ + + + +  +I G   +G   
Sbjct: 603 VYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEE 662

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCH--------------------------GGLV 429
           +++  F  M    +  +E TF  +LSAC +                           GLV
Sbjct: 663 ESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLV 722

Query: 430 D-----EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS--GLLEEAEQLIRSMPMAADVV 482
           D        +Y   ++S  R+      YS    ++G S  G + EA +L  S+    + V
Sbjct: 723 DVYCKCNNMRYAESVNSELRMQ---NVYSITSMIVGYSSQGNMAEARKLFDSLD-EKNSV 778

Query: 483 VWGALFF 489
           VW ALFF
Sbjct: 779 VWTALFF 785


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 281/483 (58%), Gaps = 35/483 (7%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   +++ G   D ++   ++     C  +  A  +F  +   N+  + +LI+GFV SG 
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             EAI+L+  M  E + PD   M  ++ AC     L  GRE+H    + G +    +   
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE----KY 276
           +M++Y KCG+L  A                               R++F+++PE    K 
Sbjct: 178 IMELYGKCGELGDA-------------------------------RRVFEEMPEDVVAKD 206

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V W A+I G+V+ + +  AL  F  MQ   ++P+  T V  LSACSQLGAL+ G W+H 
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 266

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           ++ K    LN+ +G AL++MY++CG+I +A  VF EM +R+ +TY  +I GL+++GK+  
Sbjct: 267 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 326

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           AI  F  M+G  L P  +TF+G+L+AC HGGLVD G + F  M+  +R+ P+++HY CMV
Sbjct: 327 AIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMV 386

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           DLLGR G LEEA  LIR+M M  D ++ G L  AC++H N+ +GE+ A +L +    DSG
Sbjct: 387 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSG 446

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            YVLL+++Y  S  W+EA +VR  M+E G++K PGCSSIEVN  ++EF++ D  HP+ E+
Sbjct: 447 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKER 506

Query: 577 IYD 579
           IY+
Sbjct: 507 IYE 509



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 42/377 (11%)

Query: 6   LISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI +G +    + F    + S+   +DY ++I     NPN + +   I GF+ +G   EA
Sbjct: 62  LIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEA 121

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           + LY +ML      PDN+    + K C S L LR  G E+    LKLGF  +  V   ++
Sbjct: 122 IQLYSRMLHES-ILPDNYLMASILKACGSQLALR-EGREVHSRALKLGFSSNRLVRLRIM 179

Query: 122 HVFVSCGDLGLACNVFDES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
            ++  CG+LG A  VF+E       ++ V W ++I+GFVR+     A+  FR MQ E V 
Sbjct: 180 ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVR 239

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+E T++ ++SAC+QL  L +GR +H Y+ +  + L + + NAL++MY +CG ++ A+ +
Sbjct: 240 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 299

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M ++ V++  TMI G +  G                               +S++A+
Sbjct: 300 FDEMKDRDVITYNTMISGLSMNG-------------------------------KSRQAI 328

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDM 356
            LF  M    ++P  VT V  L+ACS  G +D G  I H           +     +VD+
Sbjct: 329 ELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL 388

Query: 357 YAKCGNIAKALQVFHEM 373
             + G + +A  +   M
Sbjct: 389 LGRVGRLEEAYDLIRTM 405



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 141/329 (42%), Gaps = 41/329 (12%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++S   +   +N    IH  +  +G +    +   L+    KC  ++ A  IF    N  
Sbjct: 42  IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHN-- 99

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                                      P  Y+  + A+I G+V +    EA+ L+  M  
Sbjct: 100 ---------------------------PNVYL--YTALIDGFVSSGNYLEAIQLYSRMLH 130

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
             I PD       L AC    AL +G  +H    K  F+ N ++   ++++Y KCG +  
Sbjct: 131 ESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 190

Query: 366 ALQVFHEMPE----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           A +VF EMPE    ++++ +TA+I G   + +   A+  F  M G  + P+E T + +LS
Sbjct: 191 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G ++ GR   + M   F +   L   + ++++  R G ++EA+ +   M    DV
Sbjct: 251 ACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDV 308

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLEL 510
           + +  +     ++G      R A++L  +
Sbjct: 309 ITYNTMISGLSMNGK----SRQAIELFRV 333


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 301/543 (55%), Gaps = 33/543 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I  + + GK   A+  + +M +  G  P++ T+ ++   C  L     G E+   +
Sbjct: 175 WNAVISCYFKDGKAEMALKTFDKM-KELGFEPNSVTFTVVVSSCTRLLNLERGKEVHREL 233

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           ++    +D +V +A++ ++  CG L +A  VF++   +N ++WN++I G+   G  R  I
Sbjct: 234 IERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCI 293

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            L   M  E  +P  +T+  ++ A ++   L  G+ IH YI  + + + + +  +L+D Y
Sbjct: 294 ELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFY 353

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KCG + SAE                                IF  + +  VV WN +I 
Sbjct: 354 FKCGYVSSAE-------------------------------TIFRTISKNEVVSWNVMIS 382

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           G+V      +AL ++  M+   +KPDA+T    LSACSQL ALD G  +H  I       
Sbjct: 383 GHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEA 442

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           N ++  AL+DMYAKCG++ +A ++FH++P+R+ +++T++I     HG+A +A+  F EM 
Sbjct: 443 NEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQ 502

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
            + +  D +TFL +LSAC H GLVDEG  YF +M   + + P ++HYSC++DLLGR+G L
Sbjct: 503 KLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRL 562

Query: 466 EEA-EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
            EA E L RS    +D+ +   LF AC LH N  +G +    L+E+DP D   Y+LL+NM
Sbjct: 563 HEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNM 622

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           Y   N W+E  KVR+ M+E G++K+PGCS IE+N  ++ F   DKS+P  + +Y+CL  L
Sbjct: 623 YASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKSNPLADGVYECLNIL 682

Query: 585 TRH 587
             H
Sbjct: 683 GCH 685



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 230/475 (48%), Gaps = 33/475 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  +  +    +  EA+ L+ Q+  N   RPD +TYP++ K C  LG    G  I  H+
Sbjct: 73  WNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHL 132

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           LK G   D++V +++++++  C     A  +FDE   R++  WN++I+ + + G    A+
Sbjct: 133 LKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMAL 192

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
           + F  M+    EP+ VT   +VS+C +L +L  G+E+H  + E  + L   + +AL+DMY
Sbjct: 193 KTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMY 252

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            KCG LE A+E+F+ +  K  ++                               WNA+I 
Sbjct: 253 GKCGCLEMAKEVFEKIPRKNAIT-------------------------------WNAMIT 281

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY     S+  + L   M   G KP  +T    + A S+   L  G +IH +I +   ++
Sbjct: 282 GYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV 341

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           ++ +  +L+D Y KCG ++ A  +F  + +   +++  +I G  + G  + A+  +  M 
Sbjct: 342 DIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMK 401

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
              + PD +TF   LSAC     +D+GR+    + +  +L         ++D+  + G +
Sbjct: 402 EHHVKPDALTFSSTLSACSQLAALDKGRELHYCIIN-HKLEANEIVMGALLDMYAKCGDV 460

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           +EA +L   +P   D+V W ++ FA   HG  S   R   ++ +L+ +   +  L
Sbjct: 461 DEARKLFHQLP-KRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFL 514



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 198/417 (47%), Gaps = 40/417 (9%)

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES-CVRN 144
            + C S  L   G  I   +   GF  ++ +  ++I  + SC D   A  VF  + C  +
Sbjct: 10  LRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPLD 69

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +  WN+L++ +  +    EA++LF  +     V PD  T   ++ AC  L  +  GR IH
Sbjct: 70  VSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIH 129

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            ++ ++GL   V + ++LM+MY KC +                              F+D
Sbjct: 130 NHLLKTGLIWDVFVGSSLMNMYAKCDQ------------------------------FVD 159

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A K+FD+ P++ V  WNA+I  Y +  +++ AL  F +M+  G +P++VT    +S+C+
Sbjct: 160 -AIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCT 218

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           +L  L+ G  +HR + +    L+  + +ALVDMY KCG +  A +VF ++P +N++T+ A
Sbjct: 219 RLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNA 278

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G +L G +   I     M   G  P  +T   I+ A      +  G K+        
Sbjct: 279 MITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHG-KFIHGYILRN 337

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           R+   +     ++D   + G +  AE + R++    +VV W  +     + G+V +G
Sbjct: 338 RIDVDIFIDVSLIDFYFKCGYVSSAETIFRTIS-KNEVVSWNVM-----ISGHVMVG 388



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 8/239 (3%)

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D VT +  L  C+    L  G  IH+ I    F  N+VL  +L+  Y  C + A A  VF
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 371 --HEMPERNSLTYTAIIGGLALHGKALDAISYFSEM-IGVGLMPDEITFLGILSACCHGG 427
             ++ P   SL + A++     + + ++A+  F ++     + PD  T+  +L AC   G
Sbjct: 62  QTNDCPLDVSL-WNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            V  GR+    +     L   +   S ++++  +     +A +L    P   DV  W A+
Sbjct: 121 RVIYGRRIHNHLLKT-GLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQ-RDVGCWNAV 178

Query: 488 FFACRLHGNVSIGERA--AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
                  G   +  +    MK L  +P      V++++  R  N+       R+++E R
Sbjct: 179 ISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERR 237


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 290/528 (54%), Gaps = 45/528 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           + F+WN AIR  L       A  LY   +R  G RPD +T+P + K C        G  +
Sbjct: 78  DPFAWNTAIR--LHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSG 159
               ++ G   D++  NA+I  +    D+     VFDE+    R+LVSWNS++ G+V  G
Sbjct: 136 HAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCG 195

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A  +F +M      P + T                     W               
Sbjct: 196 EMGLAQEMFDEM------PQKDT-------------------FSW--------------A 216

Query: 220 ALMDMYVKCGK--LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            L+D Y K G   ++ A E+FD M  + +V   +MI GYA+ G +D AR +F+++PE+ V
Sbjct: 217 TLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNV 276

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           + W+ +I G+V    +KEAL  F  M   G++PD +  V  +SAC+QLGAL+ G W+H +
Sbjct: 277 ISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSY 336

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           +EK+    +VV+ TAL+DMY KCG +  A+ +F  M ER+ +T+  +I GL  HG  LDA
Sbjct: 337 LEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDA 396

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           ++ F  M    +  D+++ LG+L+AC H GLV EG + F +M   F + PK++HY  +VD
Sbjct: 397 VTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVD 456

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L++A   I +MPM     +WG+L  ACR H  V + E +  +L +L   DSG+
Sbjct: 457 LLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLADLGADDSGV 516

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFI 565
           YVLL+N+Y D  MW +  ++RK+M + G+ K  G S IEV+G ++EF+
Sbjct: 517 YVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFV 564



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 2/216 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D    +   +   N  SW++ I G +  G+ +EA++ ++ MLR G  RPD        
Sbjct: 260 RMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCG-LRPDRIAAVGAV 318

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG    G  +  ++ K     D+ V  A+I ++V CG L LA  +F+    R++V
Sbjct: 319 SACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVV 378

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWY 205
           +WN +I G    GF  +A+ LF  M+ E V  D+++++GM++AC     ++ G EI H  
Sbjct: 379 TWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRM 438

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             + G+   V    AL+D+  + G+L+ A    ++M
Sbjct: 439 KKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETM 474


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/481 (39%), Positives = 277/481 (57%), Gaps = 33/481 (6%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G +  A  +F      +   WN++I G  +S  P  AI L+  M+   V PD+ T   ++
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG------------------ 229
            AC +L  + +G  +H  +   G      + N L+  +  CG                  
Sbjct: 86  KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145

Query: 230 -------------KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
                        +L  A ++FD M  K +VS   MI GYAK G ++ ARK+FD++P++ 
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRD 205

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV WNA+I GYV    +++AL +F EM++ G  PD VT +  LSAC+ LG LD G  IH 
Sbjct: 206 VVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHC 265

Query: 337 FIEKENF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            I +  F +L+V+LG AL+DMYAKCG+I +AL+VF  M E++  T+ +++GGLA HG A 
Sbjct: 266 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAE 325

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            +I  F+EM  + + PDEITF+G+L AC H G V+EGR+YF  M   + + P ++HY CM
Sbjct: 326 KSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCM 385

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLLGR+GLL EA   I +M +  + +VW  L  ACR+HGNV +G RA M+LL++   +S
Sbjct: 386 VDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDES 445

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE-VNGLLYEFIVRDKSHPEL 574
           G YVLL+N+Y     W+   KVRK+M++ GV K  GCS IE  N  L  F+   K +  +
Sbjct: 446 GDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLFDSKPNLFI 505

Query: 575 E 575
           E
Sbjct: 506 E 506



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 208/458 (45%), Gaps = 97/458 (21%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M + G  S+  A   LI   +I+ S  + Y  ++  ++  P++F WN  IRG  ++    
Sbjct: 1   MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ LY QM  NG  RPD FT+P + K C  L    +G+ + G V +LGF+ + +V N +
Sbjct: 61  NAISLYSQM-ENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTL 119

Query: 121 IHVFVSCGD-------------------------------LGLACNVFDESCVRNLVSWN 149
           I+   +CGD                               LG+A  +FDE  V++LVSWN
Sbjct: 120 IYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWN 179

Query: 150 SLINGFVRSGFPREAIRLF-----RDM------------------QLERVE--------P 178
            +I G+ + G    A +LF     RD+                   LE  E        P
Sbjct: 180 VMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELP 239

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAEEI 237
           DEVTM+ ++SAC  L DL+ G+ IH  ISE G   L+V L NAL+DMY KCG +  A E+
Sbjct: 240 DEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 299

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  M                                EK V  WN+++GG      +++++
Sbjct: 300 FQGM-------------------------------REKDVSTWNSVLGGLAFHGHAEKSI 328

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDM 356
            LF EM+   I+PD +T V  L ACS  G +++G      +  E N   N+     +VD+
Sbjct: 329 HLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDL 388

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
             + G + +A      M  E N++ +  ++G   +HG 
Sbjct: 389 LGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGN 426



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 45/225 (20%)

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           A  G +A A Q+F  + E ++  +  +I G A     L+AIS +S+M    + PD+ TF 
Sbjct: 23  AISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFP 82

Query: 418 GILSACC-----------HGGLVDEGRK----------YF-------AQMSSIFRLSPK- 448
            +L AC            HG +   G +          YF       A   ++F  S K 
Sbjct: 83  FVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKR 142

Query: 449 -LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE-RAAMK 506
            +  +S +     R G L  A QL   MP+  D+V W  +     + G    GE  +A K
Sbjct: 143 DVVAWSALTAGYARRGELGVARQLFDEMPV-KDLVSWNVM-----ITGYAKRGEMESARK 196

Query: 507 LLELDPQDSGI--------YVLLANMYRDSNMWEEAGKVRKMMEE 543
           L +  P+   +        YVL  +  +   M+EE   V ++ +E
Sbjct: 197 LFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDE 241


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 306/544 (56%), Gaps = 20/544 (3%)

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           +RE       + R+   R   F + +L K C S   R L  +I   ++  GF    Y+ N
Sbjct: 9   LRENATAISAIGRSSRVR-QQFIFSVL-KSCVSF--RNLA-KIHAQIVVSGFSQKNYILN 63

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            ++ +++S G LG A  VF++    +   WN +I G  RS   +++I LF+ M L  VE 
Sbjct: 64  HLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA 123

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK-----LES 233
           +  T   ++SAC +      G +IH  +  +G    + +   L+++Y   G      L+ 
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A  +FD M +  VV   +++ GY + G  D ARK+FD++PE+ V  W  ++ G+ Q  + 
Sbjct: 184 ARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK----ENFNLNVVL 349
           K AL+LF +M+  G++ D V  V  LSAC++LG L  G WIH ++E+     +  + V L
Sbjct: 244 KLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSL 303

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG- 408
             AL+ MYA CG +  A +VF E+P+RN++++++II G A  G  ++AI  F  M+  G 
Sbjct: 304 NNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQ 363

Query: 409 --LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             + PDEITF+G L+AC H GL+ +G + F  M   F + P+++HY CMVDLL R+GLL 
Sbjct: 364 NEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLT 423

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL-LELDP--QDSGIYVLLAN 523
           EA  LI SMPM  +  VWGAL   CRLH N  I    A  L  E+ P  Q +G ++LLAN
Sbjct: 424 EALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIHPNNQAAGYFMLLAN 483

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           +Y     W++   VR+ M + GV+K  G S IE+NG+L  F+V +++H ++  IY+ L  
Sbjct: 484 VYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEINGVLCSFMVGEETHKDVNLIYEMLGN 543

Query: 584 LTRH 587
           +TR 
Sbjct: 544 ITRQ 547



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 202/432 (46%), Gaps = 80/432 (18%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L    K+  ++  P++  WN  I+G   +   +++++L+K+M    G   + FTY  L 
Sbjct: 74  SLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTL-AGVEANGFTYSFLL 132

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG-----DLGLACNVFDESC 141
             C    L   G +I G VL  G+  ++YV   +I+++ + G     DL  A  +FDE  
Sbjct: 133 SACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMP 192

Query: 142 VRNLVSWNSLINGFVRSG-----------FPREAIR--------------------LFRD 170
             N+V WNSL+ G+VR G            P   +R                    LF  
Sbjct: 193 DSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQ 252

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES----GLTLTVPLANALMDMYV 226
           M+   VE D+V ++  +SACA+L DL LG+ IH Y+  +     L + V L NAL+ MY 
Sbjct: 253 MRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYA 312

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
            CG ++ A ++F+ +  +  VS +++I G+AK G                          
Sbjct: 313 SCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGC------------------------- 347

Query: 287 YVQAKRSKEALALFHEMQATG---IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
                   EA+ +F  M  +G   ++PD +T +  L+ACS  G + DGI + + + K  F
Sbjct: 348 ------GVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHK-TF 400

Query: 344 NL--NVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISY 400
            +   +     +VD+ ++ G + +AL +   MP + N+  + A++ G  LH K  + +S+
Sbjct: 401 GVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLH-KNDEIVSH 459

Query: 401 FSEMIGVGLMPD 412
            ++ +   + P+
Sbjct: 460 VAKHLSFEIHPN 471


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 300/566 (53%), Gaps = 36/566 (6%)

Query: 6   LISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I  G    R++  C I   S+  + +   ++   +  P+    ++ I  F       EA
Sbjct: 288 VIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEA 347

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
            D++ QM  + G +P+ +T+  L  V +  G   L   I  H++K GF     V +A++ 
Sbjct: 348 FDIFMQM-SDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVG 406

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++V  G +  A   FD     ++ SWN+L++GF         +R+F+++  E V  ++ T
Sbjct: 407 MYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYT 466

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
            +G++  C  L DL  G ++H  + +SG      ++  L+DMYV+ G             
Sbjct: 467 YVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAG------------- 513

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                 C T             AR +FD L E+ V  W  ++  Y +    ++A+  F  
Sbjct: 514 ------CFTN------------ARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRS 555

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M     +P+  T    LS CS L  L  G+ +H +  K  +N +VV  +ALVDMY KCGN
Sbjct: 556 MLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVV-SSALVDMYVKCGN 614

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +A A  +F E    + + +  II G A HG    A+  F EMI  G +PDEITF+G+LSA
Sbjct: 615 LADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSA 674

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GL+DEGR+YF  +SS++ ++P L+HY+CMVD+L ++G L EAE LI  MP+  D  
Sbjct: 675 CSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDAS 734

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +W  +  ACR+HGN+ I ERAA KL E  P D    +LL+N+Y D   W +  K+R M+ 
Sbjct: 735 LWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLV 794

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRD 568
           +RGV+K PGCS IE+NG L+ F+ +D
Sbjct: 795 DRGVKKEPGCSWIEINGKLHVFLSQD 820



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 207/496 (41%), Gaps = 38/496 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL     + S + A+ +  E   +D   + L +    +  SWN  +  +   G   
Sbjct: 188 VKLEGLFDPYVSSSLVEAYVSCGE---VDVAERALLDSPVRSDVSWNALLNEYARDGDYA 244

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + + ++ +++ +G      +T P + K C  LGL   G  + G V+K G + D  ++N +
Sbjct: 245 KVMLVFDKLVESG-DEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCL 303

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++  C     A  VF      ++V  + +I+ F R     EA  +F  M    V+P++
Sbjct: 304 IEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQ 363

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T +G+    ++  D+NL R IH +I +SG + T  + +A++ MYVK G ++ A   FD 
Sbjct: 364 YTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDL 423

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M    + S                               WN ++ G+      +  L +F
Sbjct: 424 MQGPDIAS-------------------------------WNTLLSGFYSGNNCEHGLRIF 452

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            E+   G+  +  T V  L  C+ L  L  G  +H  + K  F  +  +   L+DMY + 
Sbjct: 453 KELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQA 512

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G    A  VF  + ER+  ++T ++   A   +   AI  F  M+     P++ T    L
Sbjct: 513 GCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSL 572

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           S C     +  G +  +        S  +   S +VD+  + G L +AE L        D
Sbjct: 573 SVCSDLACLGSGLQLHSYTIKSGWNSSVVS--SALVDMYVKCGNLADAEMLFDESD-THD 629

Query: 481 VVVWGALFFACRLHGN 496
           +V W  +      HG+
Sbjct: 630 LVEWNTIICGYAQHGH 645



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 162/359 (45%), Gaps = 31/359 (8%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           +Y    + CA+      G  +   +L+ G   D ++H+++++++  CG L  A +VFD  
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R++V+W ++++    +G    A+RLF +M  E V P+   +   + AC    DL    
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP 181

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H              A A+        KLE    +FD  V+ ++V        Y   G
Sbjct: 182 QVH--------------AQAV--------KLEG---LFDPYVSSSLVE------AYVSCG 210

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            +D+A +   D P +  V WNA++  Y +     + + +F ++  +G +    T    L 
Sbjct: 211 EVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLK 270

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
            C +LG    G  +H  + K     + VL   L++MY+KC +   A +VF  + E + + 
Sbjct: 271 CCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVH 330

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
            + +I     H  A +A   F +M  +G+ P++ TF+G+       G V+  R   A +
Sbjct: 331 CSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHI 389



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 162/379 (42%), Gaps = 32/379 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +W   +      G    A+ L+ +M   G   P+ F      K C          ++   
Sbjct: 128 AWTAMVSAITAAGDAGAALRLFAEMSEEG-VVPNGFALAAALKACTVGSDLGFTPQVHAQ 186

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +KL    D YV ++++  +VSCG++ +A     +S VR+ VSWN+L+N + R G   + 
Sbjct: 187 AVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKV 246

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + +F  +     E  + T+  ++  C +L     G+ +H  + + GL     L N L++M
Sbjct: 247 MLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEM 306

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KC   E A E+F  +    VV C+ MI  + +    D+A + FD              
Sbjct: 307 YSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRH---DMAPEAFD-------------- 349

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                         +F +M   G+KP+  T V      S+ G ++    IH  I K  F+
Sbjct: 350 --------------IFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFS 395

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
               +  A+V MY K G +  A+  F  M   +  ++  ++ G          +  F E+
Sbjct: 396 RTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKEL 455

Query: 405 IGVGLMPDEITFLGILSAC 423
           I  G++ ++ T++GIL  C
Sbjct: 456 ICEGVLANKYTYVGILRCC 474


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/555 (34%), Positives = 313/555 (56%), Gaps = 22/555 (3%)

Query: 33  KILFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           ++LF+ Q P  +  SWN  + G+ + G ++EA +++ +M        ++ ++  +     
Sbjct: 131 RLLFD-QMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-----PCKNSISWNGMLAAYV 184

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
             G      E    + +   D ++   N ++  +V    L  A  +FD    R+ VSWN+
Sbjct: 185 QNGR----IEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 240

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I+G+ ++G   EA RLF +  +     D  T   MVS   Q   L+  R +       G
Sbjct: 241 MISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQNGMLDEARRVF-----DG 291

Query: 211 LTLTVPLA-NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           +     ++ NA++  YV+C +++ A E+F++M  + V S  TMI GYA+ G +  AR  F
Sbjct: 292 MPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 351

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D +P++  + W AII GY Q+   +EAL LF EM+  G + +  T    LS C+++ AL+
Sbjct: 352 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  +H  + K        +G AL+ MY KCGNI  A  VF  + E+  +++  +I G A
Sbjct: 412 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 471

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            HG   +A+  F  M   G++PD++T +G+LSAC H GLVD+G +YF  M+  + ++   
Sbjct: 472 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANS 531

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           KHY+CM+DLLGR+G L++A+ L+++MP   D   WGAL  A R+HGN  +GE+AA  + E
Sbjct: 532 KHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE 591

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           ++P +SG+YVLL+N+Y  S  W + G++R  M +RGV+K PG S +EV   ++ F V D 
Sbjct: 592 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDS 651

Query: 570 SHPELEQIYDCLVQL 584
            HPE ++IY  L +L
Sbjct: 652 VHPERDRIYTFLEEL 666



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 160/381 (41%), Gaps = 62/381 (16%)

Query: 108 LGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL 167
           L  D D+   N  I   +  G    A  +F+    R+ +SWN++I+G + +     A +L
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 168 FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR----------EIHW-----------YI 206
           F  M       D V+   M+S C +  +L   R           + W           Y+
Sbjct: 103 FEKMPTR----DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 207 SESGLTL-TVPLANA-----LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
            E+      +P  N+     ++  YV+ G++E A  +F+S  +  ++S   M+ GY K  
Sbjct: 159 KEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRN 218

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
            L  AR IFD +PE+  V WN +I GY Q     EA  LF E        D  T    +S
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVS 274

Query: 321 ACSQLGALDDGIWIHRFI-EKENFNLNVVLG--------------------------TAL 353
              Q G LD+   +   + EK + + N ++                             +
Sbjct: 275 GYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTM 334

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           +  YA+ G+IA+A   F  MP+R+S+++ AII G A  G   +A+  F EM   G   + 
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 394

Query: 414 ITFLGILSACCHGGLVDEGRK 434
            TF   LS C     ++ G++
Sbjct: 395 STFTSTLSTCAEIAALELGKQ 415



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 151/344 (43%), Gaps = 46/344 (13%)

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N  +  +++ G+ +SA  +F+SM  ++ +S   MI G        +AR++F+ +P + +V
Sbjct: 53  NIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLV 112

Query: 279 PWNAIIGGYVQAKRSKEALALFHEM----------------QATGIK-----------PD 311
            WN +I G V+ +  + A  LF +M                Q   +K            +
Sbjct: 113 SWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN 172

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           +++    L+A  Q G ++D     R + +   +  ++    ++  Y K   +  A  +F 
Sbjct: 173 SISWNGMLAAYVQNGRIEDA----RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFD 228

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            MPER+ +++  +I G A +G+ L+A   F E      + D  T+  ++S     G++DE
Sbjct: 229 RMPERDEVSWNTMISGYAQNGELLEAQRLFEE----SPVRDVFTWTAMVSGYVQNGMLDE 284

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
            R+ F  M     +S     ++ ++    +   +++A +L  +MP   +V  W  +    
Sbjct: 285 ARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMP-CQNVSSWNTMITGY 338

Query: 492 RLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEEA 534
             +G+++     A    +  PQ DS  +  +   Y  S   EEA
Sbjct: 339 AQNGDIA----QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEA 378



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 22/244 (9%)

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           +V     I  + + G  D A ++F+ +P +  + WNA+I G +   +   A  LF +M  
Sbjct: 49  IVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPT 108

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
                D V+    +S C +   L       R +  +    +VV   A++  YA+ G + +
Sbjct: 109 R----DLVSWNVMISGCVRYRNLRAA----RLLFDQMPERDVVSWNAMLSGYAQNGYVKE 160

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A ++F EMP +NS+++  ++     +G+  DA   F       L         I   C  
Sbjct: 161 AKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWEL---------ISWNCMM 211

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKH--YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
           GG V   R        IF   P+     ++ M+    ++G L EA++L    P+  DV  
Sbjct: 212 GGYVKRNR--LVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV-RDVFT 268

Query: 484 WGAL 487
           W A+
Sbjct: 269 WTAM 272


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 279/487 (57%), Gaps = 14/487 (2%)

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           G  ++L      YV   ++HV    G    A  VF      NL   N++I  + ++   R
Sbjct: 31  GLAVRLCLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHR 90

Query: 163 EAIRLFRDMQLERVEPDEVTMIG-----------MVSACAQLEDLNLGREIHWYISESGL 211
           +A+ ++  +++ R  PD  +  G           ++ AC  L    LGR++H +++ SG 
Sbjct: 91  DAVEVY--VRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGC 148

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
                + N+L++MY +CG L  A ++FD M  K  VS  T+I  +A+ G +  AR++F  
Sbjct: 149 ESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHS 208

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +P+K VV W A++ GY        A+ +F +MQ  G +PD V+ V  L AC+QLGAL+ G
Sbjct: 209 MPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELG 268

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            WI+ +  K      + +  AL++MYAKCG I +ALQ+FH M E++ ++++  IGGLA H
Sbjct: 269 RWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAH 328

Query: 392 GKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           G+A +A+  F  M   G +MP+ ITF+G+LSAC H GL+DEG +YF +M   + + P ++
Sbjct: 329 GRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVE 388

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY C+VDLLGRSG ++ A   I  MP+  D  +WG+L  ACR H +V     AA +L+EL
Sbjct: 389 HYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVEL 448

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           +P+D G  V+LAN+Y  +  W      RK +  R   KTPGCS IEV+ ++ EF+  +  
Sbjct: 449 EPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGEDL 508

Query: 571 HPELEQI 577
            PEL  I
Sbjct: 509 GPELGGI 515



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 182/386 (47%), Gaps = 72/386 (18%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR--------NGGTRPDNFT 81
           +  ++  +V  PN    N  I+ + +    R+AV++Y +MLR         G +  D FT
Sbjct: 60  HAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFT 119

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           YP L K C  L    LG ++  HV + G +    V N++I ++  CGDL LA  VFD   
Sbjct: 120 YPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMR 179

Query: 142 VRNLVSWNSLINGFVRSGFPRE-------------------------------AIRLFRD 170
            ++ VSWN+LI+   R G  R+                               A+ +FR 
Sbjct: 180 EKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQ 239

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           MQ+E  EPD+V+++ ++ ACAQL  L LGR I+ Y ++ G+   + + NALM+MY KCG 
Sbjct: 240 MQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGC 299

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +E A ++F  M  K V+S +T I G A  G                              
Sbjct: 300 IEEALQLFHGMSEKDVISWSTAIGGLAAHG------------------------------ 329

Query: 291 KRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVV 348
            R++EA+ LF  M   G + P+ +T V  LSACS  G LD+G+ +  R  E+     +V 
Sbjct: 330 -RAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVE 388

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMP 374
               +VD+  + G I +AL     MP
Sbjct: 389 HYGCVVDLLGRSGRIQRALDTIGGMP 414



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 34/270 (12%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  SH    + LI     +   +L    K+   ++  ++ SWN  I      G+MR+A 
Sbjct: 146 SGCESHAIVQNSLIEM--YTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKAR 203

Query: 64  DLYKQM------------------------------LRNGGTRPDNFTYPLLFKVCASLG 93
           +L+  M                              ++  G  PD+ +   +   CA LG
Sbjct: 204 ELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLG 263

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              LG  I+ +  K G    +Y+ NA++ ++  CG +  A  +F     ++++SW++ I 
Sbjct: 264 ALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIG 323

Query: 154 GFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLG-REIHWYISESGL 211
           G    G  REA++LF  M  E RV P+ +T +G++SAC+    L+ G R       E G+
Sbjct: 324 GLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGV 383

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             +V     ++D+  + G+++ A +    M
Sbjct: 384 EPSVEHYGCVVDLLGRSGRIQRALDTIGGM 413


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 294/552 (53%), Gaps = 32/552 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   N+ +W   I G +  G     +  +  M R+     D++ Y +  K  A  
Sbjct: 172 KVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK-VEYDSYAYAIALKASADS 230

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  I    LK GFD + +V N++  ++  CG L    + F +    ++VSW +++
Sbjct: 231 GALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIV 290

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             +++ G     ++ F+ M+   V P+E T   ++S CA    L  G ++H ++   G  
Sbjct: 291 TAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFV 350

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +AN++M +Y KCG+L S  ++F SM                   F DI        
Sbjct: 351 NALSVANSIMTLYSKCGELASVSKVFCSM------------------KFRDI-------- 384

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                + W+ II  Y Q    +EA      M++ G KP+       LS C  +  L+ G 
Sbjct: 385 -----ITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGK 439

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H  +         ++ +AL+ MYAKCG+IA+A ++F +  + + +++TA+I G A HG
Sbjct: 440 QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHG 499

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
            + +AI  F  +  VGL PD +TF+G+L+AC H G+VD G  YF  MS  + ++P  +HY
Sbjct: 500 HSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHY 559

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
            CM+DLL R+G L +AE LIRSMP+  D VVW  L  ACR+HG+V  G+RAA ++L+LDP
Sbjct: 560 GCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDP 619

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
             +G ++ LAN++     W+EA  +R +M+ +GV K PG SS++V   ++ F+  D+SHP
Sbjct: 620 NCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHP 679

Query: 573 ELEQIYDCLVQL 584
           + E IY+ L +L
Sbjct: 680 QGEDIYNILEEL 691



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 208/469 (44%), Gaps = 39/469 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL-GYE 100
           +  SW   I G++ +    EA+ L+ +M      R D F   L  K C  LGL +L G  
Sbjct: 79  DEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCG-LGLNYLYGTN 137

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           + G  +K G    ++V +A++ +++  G++G +C VFDE   RN V+W ++I G VR+G+
Sbjct: 138 LHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGY 197

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
               +  F  M   +VE D       + A A    LN GR IH    + G      +AN+
Sbjct: 198 SEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANS 257

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L  MY KCGKL+     F  M    VVS TT++  Y + G  D                 
Sbjct: 258 LTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDC---------------- 301

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                           L  F  M+A+ + P+  T    +S C+    L  G  +H  +  
Sbjct: 302 ---------------GLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLC 346

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F   + +  +++ +Y+KCG +A   +VF  M  R+ +T++ II   +  G   +A  Y
Sbjct: 347 VGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEY 406

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
            S M   G  P+E     +LS C    ++++G++  A + S+  L       S ++ +  
Sbjct: 407 LSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSV-GLEQTSMVCSALIIMYA 465

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           + G + EA ++        D++ W A+      HG+     + A++L E
Sbjct: 466 KCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGH----SQEAIELFE 509



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 180/395 (45%), Gaps = 41/395 (10%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
           VD+   N  + + V    L  A ++FD+   R+ VSW ++I+G+V S    EA+RLF  M
Sbjct: 47  VDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM 106

Query: 172 QLE---RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
           +L+   R++P  +++   +  C    +   G  +H +  + GL  +V + +AL+DMY+K 
Sbjct: 107 RLQSELRIDPFLLSL--GLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKI 164

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G++  + ++FD M  +  V+                               W A+I G V
Sbjct: 165 GEIGRSCKVFDEMPTRNAVT-------------------------------WTAVITGLV 193

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
           +A  S+  LA F  M  + ++ D+      L A +  GAL+ G  IH    K+ F+ N  
Sbjct: 194 RAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSF 253

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +  +L  MY KCG +   L  F +M   + +++T I+      GK    +  F  M    
Sbjct: 254 VANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASN 313

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           ++P+E TF  ++S C +   +  G +  A +  +  ++  L   + ++ L  + G L   
Sbjct: 314 VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNA-LSVANSIMTLYSKCGELASV 372

Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++  SM    D++ W  +  A   +  V  GE A
Sbjct: 373 SKVFCSMKF-RDIITWSTIIAA---YSQVGYGEEA 403


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/483 (37%), Positives = 293/483 (60%), Gaps = 18/483 (3%)

Query: 117 HNAVIH------------VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           HN +IH             + S G +  +  +F ++   +L  + + IN    +G   +A
Sbjct: 53  HNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQA 112

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
             L+  +   ++ P+E T   ++ +C+       G+ IH ++ + GL L   +A  L+D+
Sbjct: 113 FLLYVQLLSSQINPNEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDI 168

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y K G + SA+++FD M  +++VS T MI  YAK G ++ AR +FD + E+ +V WN +I
Sbjct: 169 YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMI 228

Query: 285 GGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
            GY Q     +AL LF ++ A G  KPD +T V  LSACSQ+GAL+ G WIH F+     
Sbjct: 229 DGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRI 288

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
            LNV + TAL+DMY+KCG++ +A+ VF++ P ++ + + A+I G A+HG + DA+  F E
Sbjct: 289 RLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDE 348

Query: 404 MIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           M G+ GL P +ITF+G L AC H GLV+EG + F  M   + + PK++HY C+V LLGR+
Sbjct: 349 MQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRA 408

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G L+ A ++I++M M AD V+W ++  +C+LHG   +G+  A  L+  +  +SGIYVLL+
Sbjct: 409 GQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLS 468

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y     +E   KVR +M+E+G+ K PG S+IE++  ++EF   D+ H + ++IY  L 
Sbjct: 469 NIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLR 528

Query: 583 QLT 585
           +++
Sbjct: 529 KMS 531



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 186/389 (47%), Gaps = 71/389 (18%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           +P+ F +  AI      G   +A  LY Q+L +    P+ FT+  + K C++      G 
Sbjct: 90  DPDLFLFTAAINTASINGLKDQAFLLYVQLL-SSQINPNEFTFSSILKSCSTKS----GK 144

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV----------------------- 136
            I  HVLK G  +D YV   ++ ++   GD+  A  V                       
Sbjct: 145 LIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG 204

Query: 137 --------FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMV 187
                   FD  C R++VSWN +I+G+ + GFP +A+ LF+ +  + + +PDE+T++  +
Sbjct: 205 NVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAAL 264

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           SAC+Q+  L  GR IH +++ S + L V +  AL+DMY KCG LE A  +F+    K +V
Sbjct: 265 SACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIV 324

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA-T 306
           +   MI GYA  G+                               S++AL LF EMQ  T
Sbjct: 325 AWNAMITGYAMHGY-------------------------------SQDALRLFDEMQGIT 353

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAK 365
           G++P  +T +  L AC+  G +++GI I   + +E      +     LV +  + G + +
Sbjct: 354 GLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 413

Query: 366 ALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
           A ++   M  E +S+ +++++G   LHG+
Sbjct: 414 AYEIIKNMNMEADSVLWSSVLGSCKLHGE 442


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 289/533 (54%), Gaps = 32/533 (6%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++  +L    K+   + + N  SW   + G L+ G  +E + L+ +M R     P  +T 
Sbjct: 173 AKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEM-RQESILPSEYTM 231

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C  LG    G  I G V+K G   + ++  A++ ++V CG+   A  VFDE   
Sbjct: 232 ASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSF 291

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +LV W ++I G+ ++G P +A+ LF D +  R+ P+ VT+  ++SA AQL +L+LGR I
Sbjct: 292 VDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSI 351

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    + G      + NAL+DMY KC  L  A+ IF  ++N                   
Sbjct: 352 HGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLN------------------- 392

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                       K VV WN++I GY +     +AL LF  M+  G  PDA++ V+ LSAC
Sbjct: 393 ------------KDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSAC 440

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             LG L  G   H +  K  F  N+ + TAL+++Y KC ++  A +VF EM +RN++T+ 
Sbjct: 441 VCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWG 500

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+IGG  + G +  +I  F+EM+   + P+E  F  ILS C H G+V  G+K F  M+  
Sbjct: 501 AMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHY 560

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           F ++P +KHY+CMVD+L R+G LEEA + I+ MPM AD  +W A    C+LH  +   E 
Sbjct: 561 FNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEE 620

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           A  +++ L P      V+++N+Y     W+++  +RK+M+ERG+ K PGCSS+
Sbjct: 621 AVNRMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSV 673



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 238/499 (47%), Gaps = 46/499 (9%)

Query: 6   LISHGF-----APSRLIA-FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           L++HG      A ++L++ + A+ +   L    ++L    +P+++++ VA+      G+ 
Sbjct: 51  LLAHGLLRGLRAHTKLLSCYAALGD---LASARRVLDETPHPDAYTYKVALGWHAAAGRH 107

Query: 60  REAVDLYKQMLRN-GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
            EAV +++ M R     + D     L  K          G  +   V+K G   D++V N
Sbjct: 108 AEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGGG-DLFVMN 166

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            ++ ++   GDL  A  VFD    RN+VSW S+++G +++G  +E + LF +M+ E + P
Sbjct: 167 NLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILP 226

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
            E TM  ++ AC  L  L+ GR IH  + + GL     +  A++DMYVKCG+ E A ++F
Sbjct: 227 SEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVF 286

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D +    +V  TTMIVGY + G                                  +AL 
Sbjct: 287 DELSFVDLVLWTTMIVGYTQNG-------------------------------SPLDALL 315

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF + +   I P++VT    LSA +QL  L  G  IH    K     N V+  ALVDMYA
Sbjct: 316 LFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYA 375

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KC  ++ A  +F  +  ++ +T+ ++I G A +    DA+  FS M   G +PD I+ + 
Sbjct: 376 KCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVN 435

Query: 419 ILSAC-CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            LSAC C G L+    K F   +        +   + +++L  +   L  A+++   M  
Sbjct: 436 ALSACVCLGDLLIG--KCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMN- 492

Query: 478 AADVVVWGALFFACRLHGN 496
             + V WGA+     + G+
Sbjct: 493 DRNTVTWGAMIGGYGMQGD 511


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/485 (39%), Positives = 286/485 (58%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I  H +K     D +V   ++ V+     +  A  +F  +   N+  + SLI+GFV  G 
Sbjct: 46  IHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGS 105

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             +AI LF  M  + V  D   +  M+ AC     L  G+E+H  + +SGL L   +A  
Sbjct: 106 YTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALK 165

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+++Y KCG LE A ++FD M  + VV+CT MI      G ++ A ++F+++  +  V W
Sbjct: 166 LVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCW 225

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
             +I G V+       L +F EMQ  G++P+ VT V  LSAC+QLGAL+ G WIH ++ K
Sbjct: 226 TMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRK 285

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               +N  +  AL++MY++CG+I +A  +F  +  ++  TY ++IGGLALHGK+++A+  
Sbjct: 286 CGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVEL 345

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           FSEM+   + P+ ITF+G+L+AC HGGLVD G + F  M  I  + P+++HY CMVD+LG
Sbjct: 346 FSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILG 405

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R G LEEA   I  M + AD  +  +L  AC++H N+ +GE+ A  L E    DSG +++
Sbjct: 406 RVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIM 465

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N Y     W  A +VR+ ME+ G+ K PGCSSIEVN  ++EF   D  HPE ++IY  
Sbjct: 466 LSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKK 525

Query: 581 LVQLT 585
           L +L 
Sbjct: 526 LEELN 530



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 198/450 (44%), Gaps = 98/450 (21%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D+  K+    QNPN + +   I GF+  G   +A++L+ QM+R      DN+    + K
Sbjct: 75  IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKH-VLADNYAVTAMLK 133

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG------------------- 128
            C        G E+ G VLK G  +D  +   ++ ++  CG                   
Sbjct: 134 ACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVA 193

Query: 129 ---------DLGL---ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
                    D G+   A  VF+E   R+ V W  +I+G VR+G     + +FR+MQ++ V
Sbjct: 194 CTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGV 253

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EP+EVT + ++SACAQL  L LGR IH Y+ + G+ +   +A AL++MY +CG ++ A+ 
Sbjct: 254 EPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQA 313

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD +  K V +                               +N++IGG     +S EA
Sbjct: 314 LFDGVRVKDVST-------------------------------YNSMIGGLALHGKSIEA 342

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           + LF EM    ++P+ +T V  L+ACS  G +D G                         
Sbjct: 343 VELFSEMLKERVRPNGITFVGVLNACSHGGLVDLG------------------------- 377

Query: 357 YAKCGNIAKALQVFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
               G I +++++ H + PE     Y  ++  L   G+  +A  +   M   G+  D+  
Sbjct: 378 ----GEIFESMEMIHGIEPEVEH--YGCMVDILGRVGRLEEAFDFIGRM---GVEADDKM 428

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
              +LSAC     +  G K    +S  +R+
Sbjct: 429 LCSLLSACKIHKNIGMGEKVAKLLSEHYRI 458



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 14/303 (4%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           + IH +  ++  +    +A  L+ +Y K   ++ A ++F    N  V   T++I G+  F
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA----TGIKPDAVTT 315
           G    A  +F  +  K+V+  N  +   ++A   + AL    E+      +G+  D    
Sbjct: 104 GSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIA 163

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  +    + G L+D   +   + +     +VV  T ++     CG + +A++VF+EM  
Sbjct: 164 LKLVELYGKCGVLEDARKMFDGMPER----DVVACTVMIGSCFDCGMVEEAIEVFNEMGT 219

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+++ +T +I GL  +G+    +  F EM   G+ P+E+TF+ +LSAC   G ++ GR  
Sbjct: 220 RDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWI 279

Query: 436 FAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            A M    +   ++  +    ++++  R G ++EA+ L   + +  DV  + ++     L
Sbjct: 280 HAYMR---KCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRV-KDVSTYNSMIGGLAL 335

Query: 494 HGN 496
           HG 
Sbjct: 336 HGK 338


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 316/562 (56%), Gaps = 8/562 (1%)

Query: 30   YCTKILFNVQNP-NSFSWNVAIRGFLET-GKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
            +   ++F V  P N   WN  +  F  + G +   ++++K+ L   G   D+  Y +  K
Sbjct: 473  WSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKE-LHGKGVVFDSEVYSVALK 531

Query: 88   VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             C  +   +LG EI G ++K GFD+D+Y+  A+++ +  C  L  A  VF E      + 
Sbjct: 532  TCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALL 591

Query: 148  WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC-AQLEDLNLGREIHWYI 206
            WN  I   ++S   ++ + LFR MQ   ++ +  T++ ++ A  ++L  LN+G+E H Y+
Sbjct: 592  WNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYV 651

Query: 207  SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
              +G    V +  +L+DMYVK   L SA+ +FD+M N+ + +  +++ GY+  G  + A 
Sbjct: 652  LRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDAL 711

Query: 267  KIFDDLPEKYVVP----WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            ++ + + ++ + P    WN +I GY      KEALA F +MQ  G+ P++ +    L AC
Sbjct: 712  RLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRAC 771

Query: 323  SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
            + L  L  G  IH    +  F  +V + TAL+DMY+K  ++  A +VF  +  +   ++ 
Sbjct: 772  ASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWN 831

Query: 383  AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
             +I G A+ G   +AIS F+EM  VG+ PD ITF  +LSAC + GL+ EG KYF  M + 
Sbjct: 832  CMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITD 891

Query: 443  FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
            +R+ P+L+HY CMVDLLGR+G L+EA  LI +MP+  D  +WGAL  +CR+H N+   E 
Sbjct: 892  YRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAET 951

Query: 503  AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
            AA  L +L+P +S  Y+L+ N+Y   N WE+   +R++M   GV      S I++N  ++
Sbjct: 952  AAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVH 1011

Query: 563  EFIVRDKSHPELEQIYDCLVQL 584
             F   +K HP+  +IY  L QL
Sbjct: 1012 VFSSDEKPHPDAGKIYFELYQL 1033



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 187/404 (46%), Gaps = 74/404 (18%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   ++   + NP +  WN AI   L++ K+++ V+L+++M  +           +L  
Sbjct: 574 LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA 633

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             + LG   +G E  G+VL+ GFD D+YV  ++I ++V    L  A  VFD    RN+ +
Sbjct: 634 SISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFA 693

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS------------------- 188
           WNSL++G+   G   +A+RL   M+ E ++PD VT  GM+S                   
Sbjct: 694 WNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQ 753

Query: 189 ----------------ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
                           ACA L  L  G+EIH     +G    V +A AL+DMY K   L+
Sbjct: 754 QEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 813

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A ++F  + NKT+ S   MI+G+A FG                                
Sbjct: 814 NAHKVFRRIQNKTLASWNCMIMGFAIFGL------------------------------- 842

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            KEA+++F+EMQ  G+ PDA+T    LSAC   G + +G W  ++ +    +  +V    
Sbjct: 843 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEG-W--KYFDSMITDYRIVPRLE 899

Query: 353 ----LVDMYAKCGNIAKALQVFHEMPERNSLT-YTAIIGGLALH 391
               +VD+  + G + +A  + H MP +   T + A++G   +H
Sbjct: 900 HYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIH 943



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 34/354 (9%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS-GFPREAIRLFRDMQLERVEP 178
           +I  ++  GD   A  VF     RN + WNS +  F  S G     + +F+++  + V  
Sbjct: 462 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 521

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D       +  C ++ D+ LG EIH  + + G  L V L  ALM+ Y +C  LE A ++F
Sbjct: 522 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 581

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M N                             PE  +  WN  I   +Q+++ ++ + 
Sbjct: 582 HEMPN-----------------------------PEALL--WNEAIILNLQSEKLQKGVE 610

Query: 299 LFHEMQATGIKPDAVTTVHCLSAC-SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
           LF +MQ + +K +  T V  L A  S+LG L+ G   H ++ +  F+ +V +GT+L+DMY
Sbjct: 611 LFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 670

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
            K  ++  A  VF  M  RN   + +++ G +  G   DA+   ++M   G+ PD +T+ 
Sbjct: 671 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 730

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           G++S     G   E   +FAQM     + P     +C++       LL++ +++
Sbjct: 731 GMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLLRACASLSLLQKGKEI 783



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 7   ISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I +GF     +A   I   S+S +L    K+   +QN    SWN  I GF   G  +EA+
Sbjct: 788 IRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAI 847

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
            ++ +M +  G  PD  T+  L   C + GL   G++ F  ++
Sbjct: 848 SVFNEM-QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMI 889


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 311/554 (56%), Gaps = 33/554 (5%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
             I +N+ + ++ SWN  + GF++ G   EA+  Y +M R+ G +PD      +    A 
Sbjct: 337 ANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM-RDAGQKPDLVAVISIIAASAR 395

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
            G    G +I  + +K G D D+ V N+++ ++     +     +FD+   +++VSW ++
Sbjct: 396 SGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTI 455

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I G  ++G    A+ LFR++QLE ++ D + +  ++ AC+ L+ ++  +EIH YI   GL
Sbjct: 456 IAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL 515

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           +  V L N ++D+Y +CG +                               D A ++F+ 
Sbjct: 516 SDLV-LQNGIVDVYGECGNV-------------------------------DYAARMFEL 543

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +  K VV W ++I  YV    + EAL LFH M+ TG++PD+++ V  LSA + L AL  G
Sbjct: 544 IEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG 603

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             IH F+ ++ F L   L + LVDMYA+CG + K+  VF+ +  ++ + +T++I    +H
Sbjct: 604 KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMH 663

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G    AI  F  M    + PD I F+ +L AC H GL++EGR++   M   ++L P  +H
Sbjct: 664 GCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEH 723

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y+C+VDLLGR+  LEEA Q ++ M +     VW AL  AC++H N  +GE AA KLLE+D
Sbjct: 724 YACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMD 783

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P++ G YVL++N+Y     W++   VR  M+  G++K PGCS IEV   ++ F+ RDKSH
Sbjct: 784 PENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSH 843

Query: 572 PELEQIYDCLVQLT 585
           P+  +IY  L Q+T
Sbjct: 844 PQSYEIYSKLSQIT 857



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 227/456 (49%), Gaps = 37/456 (8%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F+WN  I  ++  G+   +++LY++M R  G   D  T+P + K C  L  R  G E+ G
Sbjct: 146 FTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRYGAEVHG 204

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-NLVSWNSLINGFVRSGFPR 162
             +K G+   ++V N+++ ++  C DL  A  +FD    + ++VSWNS+I+ +  +G   
Sbjct: 205 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSI 264

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+RLF +MQ   + P+  T +  + AC     +  G  IH  + +S   + V +ANAL+
Sbjct: 265 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 324

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            MY + GK+  A  IF +M +   +S                               WN+
Sbjct: 325 AMYARFGKMGEAANIFYNMDDWDTIS-------------------------------WNS 353

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           ++ G+VQ     EAL  +HEM+  G KPD V  +  ++A ++ G    G+ IH +  K  
Sbjct: 354 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNG 413

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            + ++ +G +LVDMYAK  ++     +F +MP+++ +++T II G A +G    A+  F 
Sbjct: 414 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 473

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           E+   G+  D +    IL AC    L+   ++  + +  I +    L   + +VD+ G  
Sbjct: 474 EVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYI--IRKGLSDLVLQNGIVDVYGEC 531

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           G ++ A ++   +    DVV W ++  +C +H  ++
Sbjct: 532 GNVDYAARMFELIEF-KDVVSWTSM-ISCYVHNGLA 565



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 226/452 (50%), Gaps = 37/452 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I  +   G+  EA+ L+ +M +     P+ +T+    + C        G  I   
Sbjct: 249 SWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 307

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           VLK  + ++++V NA+I ++   G +G A N+F      + +SWNS+++GFV++G   EA
Sbjct: 308 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 367

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           ++ + +M+    +PD V +I +++A A+  +   G +IH Y  ++GL   + + N+L+DM
Sbjct: 368 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDM 427

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y K   ++  + IFD M +K VVS TT+I G+A+ G                        
Sbjct: 428 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG------------------------ 463

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                      AL LF E+Q  GI  D +     L ACS L  +     IH +I ++  +
Sbjct: 464 -------SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS 516

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++VL   +VD+Y +CGN+  A ++F  +  ++ +++T++I     +G A +A+  F  M
Sbjct: 517 -DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLM 575

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSG 463
              G+ PD I+ + ILSA      + +G++     +   F L   L   S +VD+  R G
Sbjct: 576 KETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--STLVDMYARCG 633

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            LE++  +   +    D+V+W ++  A  +HG
Sbjct: 634 TLEKSRNVFNFI-RNKDLVLWTSMINAYGMHG 664



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 208/446 (46%), Gaps = 43/446 (9%)

Query: 49  AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT----YPLLFKVCASLGLRFLGYEIFGH 104
           ++R   + G + EA      +  N    P  F+    Y  + ++C S      G ++  H
Sbjct: 46  SLREICKRGSVNEAFQSLTDLFAN--QSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAH 103

Query: 105 VLKLG--FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           ++     F+  +++   ++ ++  CG L  A  +FD    + + +WN++I  +V +G P 
Sbjct: 104 MITSNALFN-SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL 162

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
            ++ L+R+M++  +  D  T   ++ AC  L+D   G E+H    + G    V +AN+++
Sbjct: 163 GSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIV 222

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWN 281
            MY KC  L  A ++FD M                               PEK  VV WN
Sbjct: 223 GMYTKCNDLNGARQLFDRM-------------------------------PEKEDVVSWN 251

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           ++I  Y    +S EAL LF EMQ   + P+  T V  L AC     +  G++IH  + K 
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           ++ +NV +  AL+ MYA+ G + +A  +F+ M + +++++ +++ G   +G   +A+ ++
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM   G  PD +  + I++A    G    G +  A  +    L   L+  + +VD+  +
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHA-YAMKNGLDSDLQVGNSLVDMYAK 430

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGAL 487
              ++  + +   MP   DVV W  +
Sbjct: 431 FCSMKYMDCIFDKMP-DKDVVSWTTI 455



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 7/263 (2%)

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G+   A  I  + +  +V   T ++  Y K G L  A K+FD +P K +  WNA+IG YV
Sbjct: 97  GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 156

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
                  +L L+ EM+ +GI  DA T    L AC  L     G  +H    KE +   V 
Sbjct: 157 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVF 216

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           +  ++V MY KC ++  A Q+F  MPE+ + +++ ++I   + +G++++A+  F EM   
Sbjct: 217 VANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKA 276

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLL 465
            L P+  TF+  L AC     + +G    A   ++ + S  +  +  + ++ +  R G +
Sbjct: 277 SLAPNTYTFVAALQACEDSSFIKQGMFIHA---TVLKSSYYINVFVANALIAMYARFGKM 333

Query: 466 EEAEQLIRSMPMAADVVVWGALF 488
            EA  +  +M    D + W ++ 
Sbjct: 334 GEAANIFYNMD-DWDTISWNSML 355


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/557 (34%), Positives = 308/557 (55%), Gaps = 34/557 (6%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
            ++LF+    N  SWN  I G+ +    R A +L ++M      + +  T   +  VC  
Sbjct: 353 ARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEE 412

Query: 92  LGLRFLGY-EIFGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
             ++FL   EI G+ L+ GF   D  V NA +  +  CG L  A  VF     + + SWN
Sbjct: 413 -EIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWN 471

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           +LI G V++GFPR+A+ L+  M+   +EPD  T+  ++SACA+L+ L+ G+EIH  +  +
Sbjct: 472 ALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRN 531

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G  L   +  +L+ +YV+CGK+                                +A+  F
Sbjct: 532 GFELDEFICISLVSLYVQCGKIL-------------------------------LAKLFF 560

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D++ EK +V WN +I G+ Q +   +AL +FH+M ++ I PD ++ +  L ACSQ+ AL 
Sbjct: 561 DNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALR 620

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  +H F  K +   +  +  +L+DMYAKCG + ++  +F  +  +  +T+  +I G  
Sbjct: 621 LGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYG 680

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
           +HG    AI  F  M   G  PD +TF+ +L+AC H GLV EG +Y  QM S+F + PKL
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKL 740

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           +HY+C+VD+LGR+G L EA +L+  +P   D  +W +L  +CR + ++ IGE+ A KLLE
Sbjct: 741 EHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLE 800

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           L P  +  YVL++N Y     W+E  K+R+ M+E G++K  GCS IE+ G +  F+V D+
Sbjct: 801 LGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDE 860

Query: 570 SHPELEQIYDCLVQLTR 586
           S  +  +I    ++L +
Sbjct: 861 SLLQSMKIQQTWIELEK 877



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 197/375 (52%), Gaps = 37/375 (9%)

Query: 7   ISHGFAPSRLI---AFCA-ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           + HGF  S  +   AF A  ++  +L Y   +   +++    SWN  I G ++ G  R+A
Sbjct: 427 LRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKA 486

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +DLY  ++R  G  PD FT   L   CA L     G EI G +L+ GF++D ++  +++ 
Sbjct: 487 LDLY-LLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVS 545

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++V CG + LA   FD    +NLV WN++INGF ++ FP +A+ +F  M   ++ PDE++
Sbjct: 546 LYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEIS 605

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           +IG + AC+Q+  L LG+E+H +  +S LT    +  +L+DMY KCG +E ++ IFD + 
Sbjct: 606 IIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVH 665

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K  V+                               WN +I GY      ++A+ LF  
Sbjct: 666 LKGEVT-------------------------------WNVLITGYGIHGHGRKAIELFKS 694

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           MQ  G +PD+VT +  L+AC+  G + +G+ ++ +          +     +VDM  + G
Sbjct: 695 MQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAG 754

Query: 362 NIAKALQVFHEMPER 376
            + +AL++ +E+P++
Sbjct: 755 RLNEALELVNELPDK 769



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 221/481 (45%), Gaps = 46/481 (9%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNV-QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN 72
           +RL+   +I +S    Y + ++FN  +  N F WN  + G+L     R+AV ++ +M+  
Sbjct: 133 TRLVTMYSICDSP---YDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISL 189

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
               PDNFT P + K C  +    LG  + G  LK     D++V NA+I ++   G +  
Sbjct: 190 TEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVES 249

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLERVEPDEVTMIGMVSAC 190
           A  VFD+   RNLVSWNS++   + +G   E+  LF+ +    E + PD  TM+ ++  C
Sbjct: 250 AVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLC 309

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A+  ++ LG   H    + GL   + + ++L+DMY KCG L  A  +FD+   K V+S  
Sbjct: 310 ARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTN-EKNVISWN 368

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIK 309
           +M                               IGGY + +  + A  L  +MQ    +K
Sbjct: 369 SM-------------------------------IGGYSKDRDFRGAFELLRKMQMEDKVK 397

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF-NLNVVLGTALVDMYAKCGNIAKALQ 368
            + VT ++ L  C +         IH +  +  F   + ++  A V  YAKCG++  A  
Sbjct: 398 VNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEG 457

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF  M  +   ++ A+IGG   +G    A+  +  M G GL PD  T   +LSAC     
Sbjct: 458 VFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKS 517

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSC--MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           +  G++    M    R   +L  + C  +V L  + G +  A+    +M    ++V W  
Sbjct: 518 LSCGKEIHGSM---LRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNT 573

Query: 487 L 487
           +
Sbjct: 574 M 574



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 176/377 (46%), Gaps = 42/377 (11%)

Query: 56  TGKMREAVDLYKQMLRN----GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV-LKLGF 110
           TG + +A +  +  L +      ++P      LL ++C       +G +I   +     F
Sbjct: 67  TGNLNQAFNFLQSNLNDVVSSSNSKPKQLI-GLLLQLCGEYKNIEIGRKIHNFISTSPHF 125

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
             D+ +   ++ ++  C     +C VF+ S  +NL  WN+L++G++R+   R+A+ +F +
Sbjct: 126 QNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVE 185

Query: 171 M-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           M  L    PD  T+  ++ AC  + D+ LG  +H +  ++ +   V + NAL+ MY K G
Sbjct: 186 MISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFG 245

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +ESA ++FD M                               P++ +V WN+++   ++
Sbjct: 246 FVESAVKVFDKM-------------------------------PQRNLVSWNSVMYACLE 274

Query: 290 AKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
               +E+  LF  +     G+ PD  T V  +  C++ G +  G+  H    K      +
Sbjct: 275 NGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGEL 334

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM-IG 406
            + ++L+DMY+KCG + +A +V  +  E+N +++ ++IGG +       A     +M + 
Sbjct: 335 KVNSSLLDMYSKCGYLCEA-RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQME 393

Query: 407 VGLMPDEITFLGILSAC 423
             +  +E+T L +L  C
Sbjct: 394 DKVKVNEVTLLNVLPVC 410



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 16/252 (6%)

Query: 319 LSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           L  C +   ++ G  IH FI    +F  +VVL T LV MY+ C +   +  VF+    +N
Sbjct: 100 LQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKN 159

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVD----EG 432
              + A++ G   +    DA+  F EMI +   +PD  T   ++ AC   G+ D    E 
Sbjct: 160 LFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACV--GVYDVRLGEA 217

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
              FA  + +      +   + ++ + G+ G +E A ++   MP   ++V W ++ +AC 
Sbjct: 218 VHGFALKTKVL---SDVFVGNALIAMYGKFGFVESAVKVFDKMPQ-RNLVSWNSVMYACL 273

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG- 551
            +G   + E +      L   D G+   +A M     +    G+VR  M   G+    G 
Sbjct: 274 ENG---VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 552 CSSIEVNGLLYE 563
           C  ++VN  L +
Sbjct: 331 CGELKVNSSLLD 342


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 207/580 (35%), Positives = 323/580 (55%), Gaps = 18/580 (3%)

Query: 1   MTITGLISHGFAPSRLI-AFCAISESKNLDYCTKILFNV--------QNPNSFSWNVAIR 51
           +  TGLI +    +R++ AF A   S   ++   + +          +  + + WN  I+
Sbjct: 15  LITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDPYLWNAVIK 74

Query: 52  GFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD 111
            +      R A+ L+  M+ NG    D F+  L+ K C+ L     G +I G + K G  
Sbjct: 75  SYSHGIDPRRALLLFCLMIENG-VCVDKFSLSLVLKACSRLEFLKEGMQIHGFLRKTGIW 133

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
            D+++ N +I +++ CG LG A  VFD    R+ VS+NS+I+G+V+ G  + A +LF  M
Sbjct: 134 SDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLM 193

Query: 172 QLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
              R   + ++   M+S  AQ  D LN   ++   + E  L       N++++  VK G+
Sbjct: 194 --PREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISW----NSMINGCVKHGR 247

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +E A+ +FD M  + VV+  TMI GYAK GF+  A+ +FD + ++ VV  N+++ GYVQ 
Sbjct: 248 IEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQN 307

Query: 291 KRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           K   EAL +F++M+  + + PD  T V  LSA +QLG L   + +H +I ++ F L   L
Sbjct: 308 KYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKL 367

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           G AL+DM++KCG+I  A+ VF  +  ++   + A+IGGLA+HG    A     ++    +
Sbjct: 368 GVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSI 427

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD ITF+G+L+AC H GLV EG   F  M     + P+L+HY C+VD+L RSG +E A+
Sbjct: 428 QPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAK 487

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
            LI  MPM  + V+W +   AC  H     GE  A  L+     +   YVLL+NMY    
Sbjct: 488 HLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYASLG 547

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           MW++  +VR MM++R + K PGCS IE++G ++EF V+DK
Sbjct: 548 MWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDK 587


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/488 (38%), Positives = 278/488 (56%), Gaps = 9/488 (1%)

Query: 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           G  ++L      YV   ++H+  + G    A  VF +    NL   N++I  + ++   R
Sbjct: 31  GLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNLHLHNAMIKAYAQNHLHR 90

Query: 163 EAIRLFRDMQLERVEP--------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           +A+ ++  M      P        D  T   ++ AC  L    LGR++H +++ SG    
Sbjct: 91  DAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGRQVHAHVARSGCESH 150

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + N+L++MY +CG L +A + FD M  K VVS  T+I  +A+ G +  AR++F  +P+
Sbjct: 151 AVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPD 210

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K VV W A++ GY        A+ +F  MQ  G +PD V+ V  L AC+QLGAL+ G WI
Sbjct: 211 KTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWI 270

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           + +  K      V +  AL++MYAKCG I +ALQ+FH M E++ ++++  IGGLA HG+A
Sbjct: 271 YAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRA 330

Query: 395 LDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
            +A+  F  M   G +MP+ ITF+G+LSAC H GLVDEG +Y  QM   + + P ++HY 
Sbjct: 331 REAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYG 390

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           C+VDLLGRSG ++ A   IR MP+  D  +WG+L  ACR HG+V     AA +L+EL+P 
Sbjct: 391 CVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVELEPG 450

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           D G  V+LAN+Y  +  W E    RK +  R   KTPGCS IEV+ ++ EF+      PE
Sbjct: 451 DVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGQDLGPE 510

Query: 574 LEQIYDCL 581
           L  I   L
Sbjct: 511 LGGIATVL 518



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 180/384 (46%), Gaps = 77/384 (20%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR-------NGGTRPDNFTYPLLF 86
           +   +  PN    N  I+ + +    R+AV++Y +MLR        G +  D FTYP L 
Sbjct: 64  VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C +L    LG ++  HV + G +    V N++I ++  CGDL  A   FD    +++V
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183

Query: 147 SWNSLINGFVRSGFPRE-------------------------------AIRLFRDMQLER 175
           SWN+LI+   R G  R                                A+ +FR MQ+E 
Sbjct: 184 SWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEG 243

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
            EPD+V+++ ++ ACAQL  L LGR I+ Y S+ G+   V + NALM+MY KCG +E A 
Sbjct: 244 FEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEAL 303

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++F  M  K V+S +T I G A  G                               R++E
Sbjct: 304 QLFHGMSEKDVISWSTAIGGLAAHG-------------------------------RARE 332

Query: 296 ALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--- 351
           A+ LF  M   G + P+ +T V  LSACS  G +D+G+   R++++   +  V  G    
Sbjct: 333 AVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGL---RYLDQMKEDYGVEPGVEHY 389

Query: 352 -ALVDMYAKCGNIAKALQVFHEMP 374
             +VD+  + G I +AL     MP
Sbjct: 390 GCVVDLLGRSGRIQRALDTIRGMP 413



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 34/270 (12%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  SH    + LI     +   +L    K    ++  +  SWN  I      G+MR A 
Sbjct: 145 SGCESHAVVQNSLIEM--YTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRAR 202

Query: 64  DLYKQM------------------------------LRNGGTRPDNFTYPLLFKVCASLG 93
           +L+  M                              ++  G  PD+ +   +   CA LG
Sbjct: 203 ELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLG 262

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              LG  I+ +  K G    +Y+ NA++ ++  CG +  A  +F     ++++SW++ I 
Sbjct: 263 ALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIG 322

Query: 154 GFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLG-REIHWYISESGL 211
           G    G  REA+RLF  M  E RV P+ +T +G++SAC+    ++ G R +     + G+
Sbjct: 323 GLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGV 382

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              V     ++D+  + G+++ A +    M
Sbjct: 383 EPGVEHYGCVVDLLGRSGRIQRALDTIRGM 412


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/434 (42%), Positives = 268/434 (61%), Gaps = 3/434 (0%)

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +WN+LI  F  +  P  +I +F  M    V PD +T   +V A ++L +  LG  +H +I
Sbjct: 80  NWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHI 139

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            +SG  +   + N+L+ MY  C  + SA ++FD M  K +V+   M+ GYAK G L++AR
Sbjct: 140 VKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAR 199

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           ++F+ +PEK VV W+++I GYV+ +   EA+ALF  M   G   + VT V  L AC+ LG
Sbjct: 200 EVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLG 259

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH--EMPERNSLTYTAI 384
           AL+ G  +HR+I +    L +VL T+LVDMYAKCG I +AL VF    + E + L + AI
Sbjct: 260 ALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAI 319

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           IGGLA HG   +A++ F EM  VG++PDEIT+L +LS C HGGLV+E   +F  +     
Sbjct: 320 IGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRK-HG 378

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           + PK++HY+CMVD L R+G + EA Q +  MP+     + GAL   C  HG + I +   
Sbjct: 379 MIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVG 438

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
            +L+ELDP   G YV L+N+Y     W++A  +R+ ME +GV+K+PG S IEV G+L+ F
Sbjct: 439 RRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHRF 498

Query: 565 IVRDKSHPELEQIY 578
           +  DK+H + EQI+
Sbjct: 499 MAHDKTHGDCEQIF 512



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/412 (32%), Positives = 204/412 (49%), Gaps = 62/412 (15%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S+L+ F A+S +++LDY  K++ NV NP +F+WN  IR F  T     ++ ++ +ML+NG
Sbjct: 49  SKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNG 108

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
              PD  TYP L K  + L  + LG  +  H++K G ++D ++ N++IH++ SC D+  A
Sbjct: 109 -VSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASA 167

Query: 134 CNVFDESCVRNLVSWN-------------------------------SLINGFVRSGFPR 162
             VFDE   +NLV+WN                               SLI+G+V+     
Sbjct: 168 RKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYG 227

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+ LF  M  +    +EVT++  + ACA L  L  GR +H YI E+ L LT+ L  +L+
Sbjct: 228 EAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLV 287

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY KCG +  A  +F         +C+                     L E  V+ WNA
Sbjct: 288 DMYAKCGAIHEALTVFR--------ACS---------------------LQEADVLIWNA 318

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           IIGG       KEA+ LF EM+  GI PD +T +  LS C+  G +++  +    + K  
Sbjct: 319 IIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHG 378

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
               V     +VD  ++ G +++A Q   +MP +  S    A++ G   HGK
Sbjct: 379 MIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGK 430



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 42/310 (13%)

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           LD + K+  ++P      WN +I  +   K    ++ +F +M   G+ PD +T    + A
Sbjct: 63  LDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKA 122

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
            S+L   + G+ +H  I K    ++  +  +L+ MYA C +IA A +VF EMP +N +T+
Sbjct: 123 TSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTW 182

Query: 382 TAIIGGLA------------------------------LHGKAL-DAISYFSEMIGVGLM 410
            A++ G A                              + G+   +A++ F  M   G M
Sbjct: 183 NAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPM 242

Query: 411 PDEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
            +E+T +  L AC H G ++ GR   +Y  +      L   +   + +VD+  + G + E
Sbjct: 243 ANEVTLVSALCACAHLGALEHGRMMHRYIVEN----ELPLTIVLQTSLVDMYAKCGAIHE 298

Query: 468 AEQLIRSMPMA-ADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQDSGIYVLLANM 524
           A  + R+  +  ADV++W A+      HG +  ++     MK++ + P D   Y+ L + 
Sbjct: 299 ALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVP-DEITYLCLLSC 357

Query: 525 YRDSNMWEEA 534
                + EEA
Sbjct: 358 CAHGGLVEEA 367


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/536 (36%), Positives = 301/536 (56%), Gaps = 19/536 (3%)

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+  Y  ML   G  P+ FT+  L + CA LG       + G +++ GF  +++V N +
Sbjct: 88  DALAAYTAML-AAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNTL 146

Query: 121 IHVFVSCGDLG---LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           + V+  CG  G    A  VFDE   R++VSWNS+I  ++ SG    A+ LF  M     E
Sbjct: 147 LDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMP----E 202

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEE 236
            + V+   +V+  A++ D+   + +   + S + ++      N ++  Y   G +E+A  
Sbjct: 203 RNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISW-----NLMISGYASSGDVEAARS 257

Query: 237 IFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           +FD M   K VVS T M+  YAK G LD A+++FD +P K +V WNA+I GY    R  E
Sbjct: 258 MFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGE 317

Query: 296 ALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           AL  F  M   G  +PD  T V  +SAC+QLG+++   WI  FI K N +L + LG AL+
Sbjct: 318 ALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALI 377

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           DM+AKCG++ +A  +F+EM  R  +T+T +I G A +G   +A+  ++ M   G+  D++
Sbjct: 378 DMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDM 437

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
            F+  L+AC HGGL+ EG   F +M   + + P+++HY C+VDLLGR+G L+EA   I S
Sbjct: 438 VFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIES 497

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MP+   VV+W  L  +C  HGN    +  + K+ EL+P +S   VL++N       W+  
Sbjct: 498 MPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELEPFNSSYQVLVSNSSALEGRWDGV 557

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY---DCLVQLTRH 587
              R +M   G+EK PG SSI+V   ++EF+ +D  H   ++IY   D L+ L RH
Sbjct: 558 IGARTIMRNWGIEKVPGSSSIQVGSEVHEFLAKDTMHERRKEIYETVDGLMALMRH 613



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 45/368 (12%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           N  SWN  + GF   G M  A  ++ +M  RN        ++ L+    AS G       
Sbjct: 204 NVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNA------ISWNLMISGYASSGDVEAARS 257

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           +F    ++    D+    A++  +   GDL  A  +FD   ++NLVSWN++I G+  +  
Sbjct: 258 MFD---RMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSR 314

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             EA+R F+ M LE R  PDE T++ +VSACAQL  +     I  +I +S + LT+ L N
Sbjct: 315 YGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGN 374

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+DM+ KCG +  A+ IF  M  + +++ TTMI G+A  G                   
Sbjct: 375 ALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGL------------------ 416

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFI 338
                         +EAL +++ M   G++ D +  +  L+AC   G L +G  I +  +
Sbjct: 417 -------------CREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMV 463

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDA 397
           E+ N    +     +VD+  + GN+ +A+     MP E + + +  ++     HG A + 
Sbjct: 464 EQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNA-EF 522

Query: 398 ISYFSEMI 405
           I Y S+ I
Sbjct: 523 IDYVSKKI 530



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 163/342 (47%), Gaps = 19/342 (5%)

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
           P +A+  +  M    V P+  T   ++ ACA L      R +H  I   G    V + N 
Sbjct: 86  PADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNT 145

Query: 221 LMDMYVKC---GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           L+D+Y +C   G++ +A ++FD MV++ VVS  ++I  Y   G    A ++F+ +PE+ V
Sbjct: 146 LLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNV 205

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           V WN ++ G+ +      A  +F  M +     +A++    +S  +  G ++        
Sbjct: 206 VSWNTLVAGFARVGDMVTAQTVFDRMPSR----NAISWNLMISGYASSGDVEAA---RSM 258

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
            ++ +   +VV  TA+V  YAK G++  A ++F  MP +N +++ A+I G   + +  +A
Sbjct: 259 FDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEA 318

Query: 398 ISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP---KLKHYS 453
           +  F  M+  G   PDE T + ++SAC   G V+    Y   +SS  R S     +   +
Sbjct: 319 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE----YCNWISSFIRKSNVHLTIALGN 374

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            ++D+  + G +  A+ +   M     ++ W  +      +G
Sbjct: 375 ALIDMFAKCGDVGRAQSIFYEMKTRC-IITWTTMISGFAFNG 415



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 5/257 (1%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A ++  +LD   ++  ++   N  SWN  I G+    +  EA+  ++ M+  G  RPD  
Sbjct: 277 AYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEA 336

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T   +   CA LG       I   + K    + + + NA+I +F  CGD+G A ++F E 
Sbjct: 337 TLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEM 396

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R +++W ++I+GF  +G  REA+ ++ +M  E VE D++  I  ++AC     L  G 
Sbjct: 397 KTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGW 456

Query: 201 EI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMI---VG 255
            I +  + +  +   +     ++D+  + G L+ A    +SM +  +VV   T++   V 
Sbjct: 457 SIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVA 516

Query: 256 YAKFGFLDIARKIFDDL 272
           +    F+D   K   +L
Sbjct: 517 HGNAEFIDYVSKKITEL 533


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 306/544 (56%), Gaps = 20/544 (3%)

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           +RE       + R+   R   F + +L K C S   R L  +    ++  GF    Y+ N
Sbjct: 9   LRENATAISAIGRSSRVR-QQFIFSVL-KSCVSF--RNLA-KTHAQIVVSGFSQKNYILN 63

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            ++ +++S G LG A  VF++    +   WN +I G  RS   +++I LF+ M L  VE 
Sbjct: 64  HLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA 123

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK-----LES 233
           +  T   ++SAC +      G +IH  +  +G    + +   L+++Y   G      L+ 
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A  +FD M +  VV   +++ GY + G  D ARK+FD++PE+ V  W  ++ G+ Q  + 
Sbjct: 184 ALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK----ENFNLNVVL 349
           K AL+LF +M+  G++ D V  V  LSAC++LG L  G WIH ++E+     +  + V L
Sbjct: 244 KLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSL 303

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG- 408
             AL+ MYA CG +  A ++F E+P+RN++++++II G A  G  ++AI  F  M+  G 
Sbjct: 304 NNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQ 363

Query: 409 --LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
             + PDEITF+G L+AC H GL+ +G + F  M   F + P+++HY CMVDLL R+GLL 
Sbjct: 364 NEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLT 423

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL-LELDP--QDSGIYVLLAN 523
           EA  LI SMPM  +  VWGAL   CRLH N  I    A  L  E+DP  Q +G ++LLAN
Sbjct: 424 EALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIDPNNQAAGYFMLLAN 483

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           +Y     W++   VR+ M + GV+K  G S IE+NG+L  F+V +++H ++  IY+ L  
Sbjct: 484 VYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEINGVLCSFMVGEETHKDVNLIYEMLGN 543

Query: 584 LTRH 587
           +TR 
Sbjct: 544 ITRQ 547



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 202/432 (46%), Gaps = 80/432 (18%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L    K+  ++  P++  WN  I+G   +   +++++L+K+M    G   + FTY  L 
Sbjct: 74  SLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTL-AGVEANGFTYSFLL 132

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG-----DLGLACNVFDESC 141
             C    L   G +I G VL  G+  ++YV   +I+++ + G     DL  A  +FDE  
Sbjct: 133 SACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMP 192

Query: 142 VRNLVSWNSLINGFVRSG-----------FPREAIR--------------------LFRD 170
             N+V WNSL+ G+VR G            P   +R                    LF  
Sbjct: 193 DSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQ 252

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES----GLTLTVPLANALMDMYV 226
           M+   VE D+V ++  +SACA+L DL LG+ IH Y+  +     L + V L NAL+ MY 
Sbjct: 253 MRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYA 312

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
            CG ++ A ++F+ +  +  VS +++I G+AK G                          
Sbjct: 313 SCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGC------------------------- 347

Query: 287 YVQAKRSKEALALFHEMQATG---IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
                   EA+ +F  M  +G   ++PD +T +  L+ACS  G + DGI + + + K  F
Sbjct: 348 ------GVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHK-TF 400

Query: 344 NL--NVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISY 400
            +   +     +VD+ ++ G + +AL +   MP + N+  + A++ G  LH K  + +S+
Sbjct: 401 GVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLH-KNDEIVSH 459

Query: 401 FSEMIGVGLMPD 412
            ++ +   + P+
Sbjct: 460 VAKHLSFEIDPN 471


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/370 (45%), Positives = 242/370 (65%)

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V L N ++  YV   ++  A ++FD M  + +VS  TMI GYA  G + +AR+IFD   +
Sbjct: 23  VFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTED 82

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           +    W+++I  Y +++RSKEAL L+ EM A  I PD +T V  +SACS LGAL  G  +
Sbjct: 83  RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEV 142

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           HRF+E     L++ LGTAL+DMYAKCG+I  A +VF  MPE++  T++++I GLA HG  
Sbjct: 143 HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLG 202

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +++S FS+MI  G+ P+ +TF+G+L AC H GLV EG+KYF  M+ +  + P ++HY C
Sbjct: 203 HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC 262

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGRSG +EEA QLIRSM    D ++W AL  ACR+H NV I E A  KL  LDP  
Sbjct: 263 MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLG 322

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
            G YVLL+N+Y  +N WE   ++RK +    +++ PG SSIE +  ++EF+  D+ HP  
Sbjct: 323 DGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRS 382

Query: 575 EQIYDCLVQL 584
           ++IY  L ++
Sbjct: 383 KEIYRVLEEM 392



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 33/281 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +IH +   G++GLA  +FD +  R+  SW+S+I+ + +S   +EA+ L+R+M 
Sbjct: 53  DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              + PD +T++ +VSAC+ L  L +G E+H ++  + + L + L  AL+DMY KCG +E
Sbjct: 113 AASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIE 172

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           SA+ +FD M  K V + ++MI+G A  G                                
Sbjct: 173 SAQRVFDRMPEKDVQTWSSMIIGLANHGL------------------------------- 201

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENFNLNVVLGT 351
             E+L+LF +M + G+KP+ VT V  L AC+ +G + +G    R + E       V    
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            +VD+  + G++ +A Q+   M  E +++ + A++G   +H
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIH 302



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 112/211 (53%), Gaps = 2/211 (0%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +I    ++ ++FSW+  I  + ++ + +EA++L+++M       PD  T   +   C+ L
Sbjct: 75  EIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM-HAASIIPDCITLVSVVSACSDL 133

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   +G E+   V     ++D+ +  A+I ++  CGD+  A  VFD    +++ +W+S+I
Sbjct: 134 GALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMI 193

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-SGL 211
            G    G   E++ LF  M  E ++P+ VT +G++ AC  +  ++ G++    ++E  G+
Sbjct: 194 IGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGI 253

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
             TV     ++D+  + G +E A ++  SM 
Sbjct: 254 EPTVEHYGCMVDLLGRSGHVEEARQLIRSMT 284


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/487 (38%), Positives = 284/487 (58%), Gaps = 11/487 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I G+ L+ G D        +I   +   +L  A  V   S    L  +N LI  +  S 
Sbjct: 6   QIHGYTLRNGIDQT----KILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAY--SS 59

Query: 160 FPR---EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
            P+   +   L+  M L    P++ T   + SAC  L   +LG+ +H +  +SG    + 
Sbjct: 60  HPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLF 119

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
            A AL+DMY K G LE A ++FD M  + V +   M+ G+A+FG +D+A ++F  +P + 
Sbjct: 120 AATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRN 179

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
           VV W  +I GY ++K+  EAL LF  M Q  G+ P+AVT      A + LGAL+ G  + 
Sbjct: 180 VVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVE 239

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALHGKA 394
            +  K  F  N+ +  A+++MYAKCG I  A +VF+E+   RN  ++ ++I GLA+HG+ 
Sbjct: 240 AYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGEC 299

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
              +  + +M+G G  PD++TF+G+L AC HGG+V++GR  F  M++ F + PKL+HY C
Sbjct: 300 CKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGC 359

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGR+G L EA ++I+ MPM  D V+WGAL  AC  H NV + E AA  L  L+P +
Sbjct: 360 MVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWN 419

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
            G YV+L+N+Y  +  W+   K+RK+M+   + K+ G S IE  G L++FIV D+SHPE 
Sbjct: 420 PGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDRSHPES 479

Query: 575 EQIYDCL 581
            +I+  L
Sbjct: 480 NEIFALL 486



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 185/404 (45%), Gaps = 68/404 (16%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR-EAVDLYKQMLRNGGTRPDNFTY 82
           E  NL Y  K+L +   P  F +N  I+ +    + + +   LY QML +    P+  T+
Sbjct: 28  EIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHS-FLPNQHTF 86

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             LF  C SL    LG  +  H +K GF+ D++   A++ ++   G L LA  +FD+  V
Sbjct: 87  NFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPV 146

Query: 143 -------------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDM 171
                                          RN+VSW ++I+G+ RS    EA+ LF  M
Sbjct: 147 RGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRM 206

Query: 172 QLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           + E+ + P+ VT+  +  A A L  L +G+ +  Y  ++G    + ++NA+++MY KCGK
Sbjct: 207 EQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGK 266

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           ++ A ++F+ +                  G L            + +  WN++I G    
Sbjct: 267 IDVAWKVFNEI------------------GSL------------RNLCSWNSMIMGLAVH 296

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
               + L L+ +M   G  PD VT V  L AC+  G ++ G  I + +   +FN+   L 
Sbjct: 297 GECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSM-TTSFNIIPKLE 355

Query: 351 T--ALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALH 391
               +VD+  + G + +A +V   MP + +S+ + A++G  + H
Sbjct: 356 HYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFH 399


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/434 (43%), Positives = 269/434 (61%), Gaps = 16/434 (3%)

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMV 187
           DL  A  +F      N  S+N+LI     S  P +A+ +F +M  +  VEP+  T   + 
Sbjct: 37  DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 96

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF--------- 238
            AC + E L  GR++H    + GL     + + ++ MY+ CG +E A  +F         
Sbjct: 97  KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 156

Query: 239 ------DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
                    V+  VV    MI GY + G L++AR +FD++P++ VV WN +I GY Q+  
Sbjct: 157 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGH 216

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            KEA+ +F EMQ   + P+ VT V  L A S+LGAL+ G W+H +  + N  ++ VLG+A
Sbjct: 217 FKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSA 276

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMYAKCG+I KALQVF  +P+RN +T++ II GLA+HG+A D + +F +M   G+MP 
Sbjct: 277 LIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 336

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           ++T++G+LSAC H GLV+EGR +F  M  +  L P+++HY CMVDLLGR+GLLEE+E+LI
Sbjct: 337 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 396

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
            +MP+  D V+W AL  AC++HGNV +G+R A  L+EL P DSG YV L+N+Y     WE
Sbjct: 397 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 456

Query: 533 EAGKVRKMMEERGV 546
              KVR MM+E  V
Sbjct: 457 GVAKVRLMMKEMDV 470



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 209/440 (47%), Gaps = 79/440 (17%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T  I    A + L+ F A+S+ ++LDY  KI  ++  PN FS+N  IR   E+    
Sbjct: 11  MIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPC 70

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+ ++ +M+ +    P+ FT+P +FK C        G ++ G  +K G D D +V + V
Sbjct: 71  DALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNV 130

Query: 121 IHVFVSC----------------------------------------------GDLGLAC 134
           + +++SC                                              G+L +A 
Sbjct: 131 VRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVAR 190

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
           N+FDE   R++VSWN +I G+ +SG  +EA+ +FR+MQ+  V P+ VT++ ++ A ++L 
Sbjct: 191 NLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLG 250

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L LG+ +H Y   + + +   L +AL+DMY KCG +E A ++F+ +  + VV+ +T+I 
Sbjct: 251 ALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIA 310

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G A  G                               R+K+ L  F +M+  G+ P  VT
Sbjct: 311 GLAMHG-------------------------------RAKDTLDHFEDMERAGVMPSDVT 339

Query: 315 TVHCLSACSQLGALDDGIW-IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
            +  LSACS  G +++G W     +        +     +VD+  + G + ++ ++   M
Sbjct: 340 YIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNM 399

Query: 374 P-ERNSLTYTAIIGGLALHG 392
           P + + + + A++G   +HG
Sbjct: 400 PIKPDDVIWKALLGACKMHG 419


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 309/558 (55%), Gaps = 32/558 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+  + +   +  P+  SWN  I G +       A++L ++M ++G   P+ FT     K
Sbjct: 162 LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC-PNMFTLSSALK 220

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA + LR LG ++   ++K+    D ++   +I ++  C  +  A  VF     R++++
Sbjct: 221 ACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA 280

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G  ++    EA  LF  M  E +  ++ T+  ++ + A L+   + R+IH    
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL 340

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SG      + N+L+D Y KCG +E A                                +
Sbjct: 341 KSGFEFDNYVVNSLIDTYGKCGHVEDA-------------------------------TR 369

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +F++ P   +V + +++  Y Q  + +EAL L+ EMQ  GIKPD+      L+AC+ L A
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G  +H  I K  F  ++  G +LV+MYAKCG+I  A   F  +P R  ++++A+IGG
Sbjct: 430 YEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGG 489

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA HG   +A+  F +M+ VG+ P+ IT + +L AC H GLV E + YF  M  +F + P
Sbjct: 490 LAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEP 549

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HY+CM+DLLGR+G LE A +L+  MP  A+ +VWGAL  A R+H N+ +GE+AA  L
Sbjct: 550 MQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEML 609

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           L L+P+ SG +VLLAN+Y    MW++  +VR++M++  V+K PG S +EV   +Y FIV 
Sbjct: 610 LALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVG 669

Query: 568 DKSHPELEQIYDCLVQLT 585
           D+SH    +IY  L +L+
Sbjct: 670 DRSHSRSTEIYAKLDELS 687



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 214/445 (48%), Gaps = 40/445 (8%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G + + F +P + K C       LG ++ G V+  GFD D +V N+++ ++  CG  G A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++FD    R++VSWN+L + +V S    EA+ LF DM L  + P+E ++  M++ C  L
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           ED   GR+IH Y+ + G       ANAL+DMY K G LE A  +FD +    +VS     
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVS----- 179

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                                     WNAII G V  +    AL L  EM  +G+ P+  
Sbjct: 180 --------------------------WNAIIAGCVLHEYHHRALELLREMNKSGMCPNMF 213

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L AC+ +   + G  +H  + K +   +  LG  L+DMY+KC ++  A  VF  M
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           PER+ + + A+I G + + +  +A S F  M   G+  ++ T   +L +          R
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCR 333

Query: 434 KYFA-QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           +  A  + S F     +   + ++D  G+ G +E+A ++    P+  D+V++ +L  A  
Sbjct: 334 QIHALSLKSGFEFDNYV--VNSLIDTYGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYA 390

Query: 493 LHGNVSIGERAAMKLLELDPQDSGI 517
             G    GE A    LE+  QD GI
Sbjct: 391 QDGQ---GEEALRLYLEM--QDRGI 410



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 227/501 (45%), Gaps = 48/501 (9%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + +TG  S  F  + L+   A  +         +   + + +  SWN     ++ +    
Sbjct: 36  VVVTGFDSDEFVANSLVILYA--KCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHG 93

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EAV L+  M+ + G RP+ F+   +  VC  L     G +I G+++KLG+D D +  NA+
Sbjct: 94  EAVSLFHDMVLS-GIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANAL 152

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           + ++   G L  A +VFDE    ++VSWN++I G V   +   A+ L R+M    + P+ 
Sbjct: 153 VDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNM 212

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T+   + ACA +    LGR++H  + +  +     L   L+DMY KC  ++ A      
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDA------ 266

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                    R +F  +PE+ ++ WNA+I G+ Q +  +EA +LF
Sbjct: 267 -------------------------RLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLF 301

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
             M   GI  +  T    L + + L A      IH    K  F  +  +  +L+D Y KC
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKC 361

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G++  A +VF E P  + + +T+++   A  G+  +A+  + EM   G+ PD      +L
Sbjct: 362 GHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLL 421

Query: 421 SACCHGGLVDEGRKY------FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           +AC      ++G++       F  MS IF         + +V++  + G +E+A      
Sbjct: 422 NACASLSAYEQGKQVHVHILKFGFMSDIFA-------GNSLVNMYAKCGSIEDASCAFSR 474

Query: 475 MPMAADVVVWGALFFACRLHG 495
           +P+   +V W A+      HG
Sbjct: 475 IPVRG-IVSWSAMIGGLAQHG 494



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 37/319 (11%)

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           M L  ++ +E     ++ AC   +DL LG+++H  +  +G      +AN+L+ +Y KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
              A  +FD+                               +P++ VV WNA+   YV +
Sbjct: 61  FGDARSLFDA-------------------------------IPDRSVVSWNALFSCYVHS 89

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
               EA++LFH+M  +GI+P+  +    ++ C+ L     G  IH ++ K  ++ +    
Sbjct: 90  DMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSA 149

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            ALVDMYAK G +  A  VF E+ + + +++ AII G  LH     A+    EM   G+ 
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC 209

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEA 468
           P+  T    L AC    L + GR+     SS+ ++      +    ++D+  +   +++A
Sbjct: 210 PNMFTLSSALKACAGMALRELGRQLH---SSLIKMDMGSDSFLGVGLIDMYSKCNSMDDA 266

Query: 469 EQLIRSMPMAADVVVWGAL 487
             + + MP   D++ W A+
Sbjct: 267 RLVFKLMP-ERDMIAWNAV 284


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/487 (38%), Positives = 281/487 (57%), Gaps = 7/487 (1%)

Query: 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRS-GFPREAIR 166
             D D  + +  IH   S G    A ++F   +   ++  +N++I     S   P+ +I 
Sbjct: 5   ALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIF 64

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
           L+ ++QL  + PD  +    + A  +   +  GR++H      GL   + +  A + MY 
Sbjct: 65  LYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYS 124

Query: 227 KCGK--LESAEEIFDSMVNKT--VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
             G   +  A ++FD M   T  V     M+ GYAK G L  AR +F+ +P++ V+ W A
Sbjct: 125 SFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTA 184

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GY QA R  +A+ALF  MQ   ++PD +  +  L+AC++LGAL+ G WI  +I++  
Sbjct: 185 LITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLG 244

Query: 343 F-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               N+ L  AL+DMYAK G+I  ALQVF  M  +  +T+T +I GLALHG   +A+  F
Sbjct: 245 LLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMF 304

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           S M    + P++ITF+ ILSAC H GLV  GR YF +M S + + PK++HY CM+DLLGR
Sbjct: 305 SRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGR 364

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L+EA+ L+  MP   + V+WG+L  AC  HG+  +GE A   LLEL+P +SG Y LL
Sbjct: 365 AGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALL 424

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +N+Y     W E+  VRK+M + GV+K PG S IEVN  ++EFI  + SH + ++I + L
Sbjct: 425 SNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVL 484

Query: 582 VQLTRHF 588
            ++ R  
Sbjct: 485 SKINRQL 491



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 182/390 (46%), Gaps = 69/390 (17%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P+ + +N  I+    +    +A       ++  G RPD++++P   K          G +
Sbjct: 40  PDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQ 99

Query: 101 IFGHVLKLGFDVDMYV-----------------------------------HNAVIHVFV 125
           +    ++ G   D++V                                    NA+++ + 
Sbjct: 100 LHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYA 159

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
             GDL  A ++F+    RN++SW +LI G+ ++  P +AI LFR MQLE VEPDE+ M+ 
Sbjct: 160 KHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLV 219

Query: 186 MVSACAQLEDLNLGREIHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++ACA+L  L LG  I  YI   G LT  +PL NAL+DMY K G ++SA ++F++M +K
Sbjct: 220 ALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHK 279

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
           T+++ TTMI G A  G                                  EAL +F  M+
Sbjct: 280 TIITWTTMIAGLALHGL-------------------------------GTEALEMFSRME 308

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIW-IHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              +KP+ +T +  LSACS +G +  G W  +R I +      +     ++D+  + G++
Sbjct: 309 RARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHL 368

Query: 364 AKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            +A  +  +MP E N++ + +++     HG
Sbjct: 369 KEAQTLLAQMPFEPNAVIWGSLLAACNTHG 398


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 312/561 (55%), Gaps = 31/561 (5%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
             + LFN +   +  SWN  + GF + G + EA  ++ QML       +  ++  L    
Sbjct: 140 AARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV-----KNEISWNGLLSAY 194

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
              G       +F   +    D ++   N ++  +V    L  A ++FD   VR+ +SWN
Sbjct: 195 VQNGRIEDARRLFDSKM----DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS------ACAQLEDLNLGREIH 203
            +I G+ ++G   EA RLF ++ +  V      + G V       A    E++    E+ 
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           W              NA++  YV+  ++E A E+FD M ++   S  TM+ GYA+ G +D
Sbjct: 311 W--------------NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNID 356

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A+ +FD++P++  + W A+I GY Q+ +S+EAL LF +M+  G   +       LS+C+
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           ++ AL+ G  +H  + K  F    + G AL+ MY KCG+I +A  VF ++ E++ +++  
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A HG   +A++ F E + + + PD++T +G+LSAC H GLVD+G +YF  M   +
Sbjct: 477 MIAGYARHGFGKEALALF-ESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNY 535

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++   KHY+CM+DLLGR+G L+EA  L++SMP   D   WGAL  A R+HG+  +GE+A
Sbjct: 536 GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA 595

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A K+ E++P +SG+YVLL+N+Y  S  W E  ++R  M ++GV+K PG S +E+    + 
Sbjct: 596 AEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHI 655

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F V D SHPE E+IY  L +L
Sbjct: 656 FTVGDCSHPEAERIYAYLEEL 676



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 225/472 (47%), Gaps = 33/472 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ESKN D        + + +   WN  I  ++  G+   A+ ++     NG  R    TY 
Sbjct: 47  ESKNSDS------TIVDSDIVKWNRKISAYMRKGQCESALSVF-----NGMRRRSTVTYN 95

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +     S  L    ++    V +   D D+   N ++  +V  G+L  A  +F++   +
Sbjct: 96  AMI----SGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK 151

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           ++VSWN++++GF ++GF  EA ++F  M ++    +E++  G++SA  Q   +   R + 
Sbjct: 152 DVVSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLF 207

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               +S +   +   N LM  YV+  +L+ A  +FD M  +  +S   MI GYA+ G L 
Sbjct: 208 ----DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            AR++F++LP + V  W A++ G+VQ     EA  +F EM     + + V+    ++   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYV 319

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           Q   ++      R +  +  + N      +V  YA+CGNI +A  +F EMP+R+ +++ A
Sbjct: 320 QSQQIEKA----RELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A  G++ +A+  F +M   G + +       LS+C     ++ G++   ++    
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             +  +   + ++ + G+ G +EEA  +   +    D+V W  +      HG
Sbjct: 436 FQTGYIAG-NALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG 485


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 306/554 (55%), Gaps = 32/554 (5%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            +ILF+ ++  N  SW   + G+   G + E + L+K M+     RP+ + +  +   C+
Sbjct: 81  ARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCS 140

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
             G    G++  G+ LK G     YV NA+I ++    D+  A +V+ E    ++ S+N 
Sbjct: 141 DSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNI 200

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +ING + +G+P EA+ +   M  E +  D VT +     C+ L+DL LG ++H  +  +G
Sbjct: 201 IINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTG 260

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
                 +++A++DMY KCG + +A                               RK+F+
Sbjct: 261 AEYDSFVSSAIIDMYGKCGNILNA-------------------------------RKVFN 289

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            L  K VV W AI+  Y Q    +EAL  F EM+  G+ P+  T    L++C+ + AL  
Sbjct: 290 RLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGH 349

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  +H  I+K  F  ++++G AL++MY+K G+I  A +VF EM  R+S+T++A+I GL+ 
Sbjct: 350 GKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSH 409

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           HG   +A+  F EM+     P  +TF+G+LSAC H G V EG  Y  Q+     + P ++
Sbjct: 410 HGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVE 469

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY+C+V LL ++G L+EAE  ++S P+  DVV W  L  AC +H N  +G++ A  +L++
Sbjct: 470 HYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQM 529

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           DP D G Y+LL+NMY  +  W+   K+RK+M ER V+K PG S IE+   ++ F+   K+
Sbjct: 530 DPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKT 589

Query: 571 HPELEQIYDCLVQL 584
           HPE  QIY+ + +L
Sbjct: 590 HPESNQIYEKVQEL 603



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 184/372 (49%), Gaps = 35/372 (9%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL+ H +  + LI  C  S   ++     + + V   + FS+N+ I G LE G   EA+
Sbjct: 158 SGLVFHQYVKNALI--CMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEAL 215

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           ++  +M+ +     DN TY   F +C+ L    LG ++   + + G + D +V +A+I +
Sbjct: 216 EVLDRMV-DECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDM 274

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG++  A  VF+    +N+VSW +++  + ++G   EA+  F +M+++ + P+E T 
Sbjct: 275 YGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTF 334

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++++CA +  L  G+ +H  I +SG    + + NAL++MY K G +E+A ++F  M+ 
Sbjct: 335 AVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMIC 394

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +  ++ + MI G +  G                                 +EAL +F EM
Sbjct: 395 RDSITWSAMICGLSHHGL-------------------------------GREALVVFQEM 423

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
            A    P  VT V  LSAC+ LG++ +G  ++++ +++      V   T +V +  K G 
Sbjct: 424 LAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGR 483

Query: 363 IAKALQVFHEMP 374
           + +A       P
Sbjct: 484 LDEAENFMKSTP 495



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 181/379 (47%), Gaps = 34/379 (8%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERV 176
           N++I+++  C  + +A  +FD    RN+VSW +L+ G+  +G   E +RLF+ M  ++ +
Sbjct: 66  NSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYM 125

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P+E     ++S+C+    +  G + H Y  +SGL     + NAL+ MY +   ++ A  
Sbjct: 126 RPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGA-- 183

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
                          M V Y              ++P   V  +N II G ++     EA
Sbjct: 184 ---------------MSVWY--------------EVPGLDVFSYNIIINGLLENGYPSEA 214

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L +   M    I  D VT V     CS L  L  G+ +H  + +     +  + +A++DM
Sbjct: 215 LEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDM 274

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCGNI  A +VF+ +  +N +++TAI+   + +G   +A+++F EM   GL+P+E TF
Sbjct: 275 YGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTF 334

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
             +L++C     +  G+    ++         +   + ++++  +SG +E A ++   M 
Sbjct: 335 AVLLNSCAGISALGHGKLLHTRIKK-SGFEDHIIVGNALINMYSKSGSIEAAHKVFLEM- 392

Query: 477 MAADVVVWGALFFACRLHG 495
           +  D + W A+      HG
Sbjct: 393 ICRDSITWSAMICGLSHHG 411



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 226 VKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           +K GK+  A  I  +   K  +V   ++I  YAK   + +AR +FD + ++ VV W A++
Sbjct: 41  LKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALM 100

Query: 285 GGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
            GY       E L LF  M +   ++P+       +S+CS  G + +G   H +  K   
Sbjct: 101 AGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGL 160

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             +  +  AL+ MY++  ++  A+ V++E+P  +  +Y  II GL  +G   +A+     
Sbjct: 161 VFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDR 220

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGR 461
           M+   ++ D +T++     C H   +  G +   +M   FR   +   +  S ++D+ G+
Sbjct: 221 MVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRM---FRTGAEYDSFVSSAIIDMYGK 277

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            G +  A ++   +    +VV W A+  A   +G
Sbjct: 278 CGNILNARKVFNRL-QTKNVVSWTAILAAYSQNG 310


>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/449 (39%), Positives = 275/449 (61%), Gaps = 4/449 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
            ++S    +VSW S I    R+G   EA + F DM+L  VEP+ +T I ++S C      
Sbjct: 17  LNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSG 76

Query: 197 N--LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           +  LG  +H Y  + G   T V +  A++ MY K  +++ A  +FD M +K  V+  TMI
Sbjct: 77  SEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMI 136

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + G +D A K+FD +PE+ ++ W A+I G+V+    +EALA F EMQ +G+KPD V
Sbjct: 137 DGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYV 196

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             +  L+AC+ LGAL  G+W+HR++  ++F  NV +  +L+D+Y +CG +  A +VF +M
Sbjct: 197 AIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKM 256

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ ++I G A +G A +++ YF +M   G  PD +TF G L+AC H GLV+EG 
Sbjct: 257 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL 316

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M    R+SP+++HY C+VDL  R+G LEEA ++++SMPM  + VV G+L  ACR 
Sbjct: 317 RYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRT 376

Query: 494 HGNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           HGN ++  ER    L +++ +    YV+L+NMY     WE A ++R+ M+  G++K PG 
Sbjct: 377 HGNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGF 436

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SSIE++   + F+  D +H E   I + L
Sbjct: 437 SSIEIDDCTHVFMAGDSAHVETADIREVL 465



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 182/384 (47%), Gaps = 68/384 (17%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA--SLGLRFLGYEIF 102
           SW   I      G++ EA   +  M R  G  P++ T+  L   C   S G   LG  + 
Sbjct: 27  SWTSRITLLTRNGRLAEAAKEFSDM-RLAGVEPNHITFIALLSGCGDFSSGSEALGDLLH 85

Query: 103 GHVLKLGFD----------VDMYVH----------------------NAVIHVFVSCGDL 130
           G+  KLG D          + MY                        N +I  ++  G +
Sbjct: 86  GYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQV 145

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FD+   R+L+SW ++INGFV+ GF  EA+  FR+MQ+  V+PD V +I  ++AC
Sbjct: 146 DNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNAC 205

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
             L  L+ G  +H Y+        V ++N+L+D+Y +CG +E A E+FD M  +TVVS  
Sbjct: 206 TNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWN 265

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++IVG+A  G                                + E+L  F +MQ  G KP
Sbjct: 266 SVIVGFAANG-------------------------------NAHESLVYFRKMQEEGFKP 294

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQV 369
           DAVT    L+ACS +G +++G+   + +++++  +  +     LVD+Y++ G + +AL+V
Sbjct: 295 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKV 354

Query: 370 FHEMPER-NSLTYTAIIGGLALHG 392
              MP + N +   +++     HG
Sbjct: 355 VQSMPMKPNEVVIGSLLAACRTHG 378



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 2/216 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +D   K+   +   +  SW   I GF++ G   EA+  +++M +  G +PD        
Sbjct: 144 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREM-QISGVKPDYVAIIAAL 202

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C +LG    G  +  +V+   F  ++ V N++I ++  CG +  A  VFD+   R +V
Sbjct: 203 NACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 262

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REIHWY 205
           SWNS+I GF  +G   E++  FR MQ E  +PD VT  G ++AC+ +  +  G R     
Sbjct: 263 SWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTM 322

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             +  ++  +     L+D+Y + G+LE A ++  SM
Sbjct: 323 KRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSM 358


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 311/548 (56%), Gaps = 39/548 (7%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR--FLGYEIFG 103
           WN+ ++G+++ G  +EA  L+ +  R+G  RPD F+  L+   C   G     LG ++ G
Sbjct: 252 WNMMLKGYVQLGLEKEAFQLFSEFHRSG-LRPDEFSVQLILNGCLWAGTDDLELGKQVHG 310

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
             +K G D D+ V N++++++   G    A  VF++    +L+SWNS+I+   +S    E
Sbjct: 311 IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEE 370

Query: 164 AIRLFRDMQLERVEPDE-----VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           ++ LF D+  E ++PD      +T+     AC  L  L+ G++IH +  ++G    + + 
Sbjct: 371 SVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN 430

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           + ++DMY+KCG           MVN  +V           F ++       DD      V
Sbjct: 431 SGILDMYIKCG----------DMVNAGIV-----------FNYISAP----DD------V 459

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W ++I G V      +AL ++H M+ + + PD  T    + A S + AL+ G  +H  +
Sbjct: 460 AWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 519

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K +   +  +GT+LVDMYAKCGNI  A ++F +M  RN   + A++ GLA HG A +A+
Sbjct: 520 IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAV 579

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
           + F  M   G+ PD ++F+GILSAC H GL  E  +Y   M + + + P+++HYSC+VD 
Sbjct: 580 NLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDA 639

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
           LGR+GL++EA+++I +MP  A   +  AL  ACR+ G+V  G+R A +L  L+P DS  Y
Sbjct: 640 LGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAY 699

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           VLL+N+Y  +N W++    RKMM+ + V+K PG S I+V  +L+ F+V D+SHP+ + IY
Sbjct: 700 VLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIY 759

Query: 579 DCLVQLTR 586
           D + ++ +
Sbjct: 760 DKVEEMMK 767



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 228/464 (49%), Gaps = 46/464 (9%)

Query: 45  SWNVAIRGFLET-----GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           +WN  +  +  +     G  +E + L++ +LR         T   + K+C + G  +   
Sbjct: 145 TWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 203

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            + G+ +K+G + D++V  A+++++  CG +  A  +FD    R++V WN ++ G+V+ G
Sbjct: 204 GVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 263

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSAC--AQLEDLNLGREIHWYISESGLTLTVPL 217
             +EA +LF +     + PDE ++  +++ C  A  +DL LG+++H    +SGL   V +
Sbjct: 264 LEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSV 323

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           AN+L++MY K G    A E+F+ M +  ++S                             
Sbjct: 324 ANSLVNMYSKMGCAYFAREVFNDMKHLDLIS----------------------------- 354

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD-----AVTTVHCLSACSQLGALDDGI 332
             WN++I    Q+   +E++ LF ++   G+KPD     ++T      AC  L  LD G 
Sbjct: 355 --WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGK 412

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH    K  F+ ++ + + ++DMY KCG++  A  VF+ +   + + +T++I G   +G
Sbjct: 413 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 472

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
               A+  +  M    +MPDE TF  ++ A      +++GR+  A +  +  +S      
Sbjct: 473 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT 532

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           S +VD+  + G +E+A +L + M +  ++ +W A+      HGN
Sbjct: 533 S-LVDMYAKCGNIEDAYRLFKKMNV-RNIALWNAMLVGLAQHGN 574



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 184/424 (43%), Gaps = 45/424 (10%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L +   S     LG      ++  G   D ++ N ++ ++  CG L  A  VFD +  R+
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 145 LVSWNSLINGFVRS-----GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
           LV+WN+++  +  S     G  +E + LFR ++        +T+  ++  C     L   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
             +H Y  + GL   V ++ AL+++Y KCG++  A  +FD M  + VV    M+ GY + 
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G                                 KEA  LF E   +G++PD  +    L
Sbjct: 263 GL-------------------------------EKEAFQLFSEFHRSGLRPDEFSVQLIL 291

Query: 320 SACSQLGA--LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           + C   G   L+ G  +H    K   + +V +  +LV+MY+K G    A +VF++M   +
Sbjct: 292 NGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 351

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL-----SACCHGGLVDEG 432
            +++ ++I   A      ++++ F +++  GL PD  T   I       AC    L+D+G
Sbjct: 352 LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQG 411

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           ++  A           L   S ++D+  + G +  A  ++ +   A D V W ++   C 
Sbjct: 412 KQIHAHAIKA-GFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCV 469

Query: 493 LHGN 496
            +GN
Sbjct: 470 DNGN 473



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 35/169 (20%)

Query: 35  LFNVQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LF   N  + + WN  + G  + G   EAV+L+K M ++ G  PD  ++  +   C+  G
Sbjct: 550 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM-KSHGIEPDRVSFIGILSACSHAG 608

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
           L    YE              Y+H+          D G+   +   SC         L++
Sbjct: 609 LTSEAYE--------------YLHSMP-------NDYGIEPEIEHYSC---------LVD 638

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
              R+G  +EA ++   M  +        ++G   AC    D+  G+ +
Sbjct: 639 ALGRAGLVQEADKVIETMPFKASASINRALLG---ACRIQGDVETGKRV 684


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 302/560 (53%), Gaps = 64/560 (11%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           +E +D +  + R G   P     PL+ K CA L     G ++  H +  G   D++V  A
Sbjct: 67  QELLDAFSSLHRRGSDVPPG-CVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTA 125

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLV-------------------------------SW 148
           ++  +   GD+  A  VFDE  V++ +                               SW
Sbjct: 126 LVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASW 185

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NS+I  +   G  +EA+RLFR M  E   P+ +T+  M S CA+  DL  G+     I+E
Sbjct: 186 NSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAE 245

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L   + +  ALM+MYVKC  +                               D AR+ 
Sbjct: 246 QDLQNMI-VHTALMEMYVKCQAI-------------------------------DEARRE 273

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD + ++ VV W+ +I GY Q  R  E+L LF  M+AT  KP+ VT V  LSAC+QLG+ 
Sbjct: 274 FDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSD 333

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G  I   +E +N  L   LG+AL+DMY KCG++ +A  VF+ M  +  +T+ +++ GL
Sbjct: 334 ELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGL 393

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           AL+G A DAI+ + EM    + P+EITF+ +L+AC H GLVD+G  +F +M +I  +SP+
Sbjct: 394 ALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQ 453

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++H +C+VDLL +SG L EA + I  M +  + V+W  L  ACR H +V + + AA KLL
Sbjct: 454 VEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLL 513

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
            L+P +S IYVLL+N+Y D+ +W +  ++R +M  + V+K    S IE++G +++F+V+D
Sbjct: 514 VLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQD 573

Query: 569 KSHPELEQIYDCLVQLTRHF 588
             HP+  +I++ +  +  H 
Sbjct: 574 TYHPKSAEIFNVVDGMGLHL 593


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 265/440 (60%), Gaps = 40/440 (9%)

Query: 148 WNSLINGFVR-----SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           WN+LI   V+     +G     I +F  M+   V+PD  T   ++ + A    L+LGR +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  I   GL +         D +V+                      T++I  Y+  G +
Sbjct: 87  HAQILRFGLAI---------DPFVQ----------------------TSLISMYSSSGLV 115

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI---KPDAVTTVHCL 319
           D+AR +F  +PE+ V+ W+ +I GYV+  + KEALALF EMQ  G+   +P+  T    L
Sbjct: 116 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 175

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM-PERNS 378
           +AC +LGAL+ G W H +I+K    ++VVLGTAL+DMYAKCG++ KA  VF  + P ++ 
Sbjct: 176 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 235

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + ++A+I GLA+HG A + +  FS+MI  G+ P+ +TFL +  AC HGGLV EG+ Y  +
Sbjct: 236 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 295

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+  + + P ++HY CMVDL GR+G ++EA  +++SMPM  DV+VWGAL    R+HG++ 
Sbjct: 296 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 355

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
             E A  KL+EL+P +SG YVLL+N+Y     WE+   VR +ME  G++K PGCS IEV 
Sbjct: 356 TCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 415

Query: 559 GLLYEFIVRDKSHPELEQIY 578
           G+L+EF V D SHPE  QI+
Sbjct: 416 GVLHEFFVGDDSHPETRQIH 435



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 194/391 (49%), Gaps = 53/391 (13%)

Query: 13  PSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLE-----TGKMREAVDLYK 67
           P+RLI+    S    L +    L       SF WN  IR  ++     TG     + ++ 
Sbjct: 4   PTRLIS----STHPTLHFSHPTL------ESFLWNTLIRAHVQARAQPTGPTHSPISIFV 53

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           +M R  G +PD  T+P L +  AS  L  LG  +   +L+ G  +D +V  ++I ++ S 
Sbjct: 54  RM-RFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSS 112

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL---ERVEPDEVTMI 184
           G + +A N+F     RN++SW+ +ING+VR G  +EA+ LFR+MQ+     V P+E TM 
Sbjct: 113 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VN 243
           G+++AC +L  L  G+  H YI + G+ + V L  AL+DMY KCG +E A  +F ++  N
Sbjct: 173 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPN 232

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           K V++ + MI G A  G                                ++E + LF +M
Sbjct: 233 KDVMAWSAMISGLAMHGL-------------------------------AEECVGLFSKM 261

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
              G++P+AVT +    AC   G + +G  ++ R  E  +    +     +VD+Y + G 
Sbjct: 262 INQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGR 321

Query: 363 IAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           I +A  V   MP E + L + A++ G  +HG
Sbjct: 322 IKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 6/241 (2%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  + LI+    S S  +D    +   +   N  SW+  I G++  G+ +EA+ 
Sbjct: 94  GLAIDPFVQTSLISM--YSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALA 151

Query: 65  LYK--QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           L++  QML     RP+ FT   +   C  LG    G     ++ K G  VD+ +  A+I 
Sbjct: 152 LFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALID 211

Query: 123 VFVSCGDLGLACNVFDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           ++  CG +  A  VF      +++++W+++I+G    G   E + LF  M  + V P+ V
Sbjct: 212 MYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAV 271

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           T + +  AC     ++ G++    ++E   +  T+     ++D+Y + G+++ A  +  S
Sbjct: 272 TFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKS 331

Query: 241 M 241
           M
Sbjct: 332 M 332


>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 541

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 168/425 (39%), Positives = 275/425 (64%), Gaps = 6/425 (1%)

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLE-DLNLGREIHWYISESGLTLTVPLANAL 221
           +A+ L++ M  + + P+ +T   +V  C++L+    +G  IH ++ + G    V + N+L
Sbjct: 111 KALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSL 170

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + +++  G  ++A ++FD M  + VVS  +M+VGY + G +++A  +F  +  + ++ WN
Sbjct: 171 ISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWN 230

Query: 282 AIIGGYVQAKRSKEALALFHEMQATG----IKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
           +II G VQA  +KE+L +FHEMQ       +KPD +T    LSAC+ LG++D G W+H +
Sbjct: 231 SIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAY 290

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           + K +   +VV+GTALV+MY KCG++ +A+++F++MPE+++  +TA+I   ALHG    A
Sbjct: 291 LRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKA 350

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
              F EM   G+ P+ +TF+G+LSAC H GLV++GR  F  M  ++ + P++ HY+CMVD
Sbjct: 351 FDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVD 410

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           +L R+ L +EA  LIRSMPM  DV VWGAL   C++HGN+ +GE+ A  L++L+P +   
Sbjct: 411 ILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAF 470

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVE-KTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
           Y+ L ++Y  +  ++ A ++R  M+ERG+E K PGCS IE+NG++ EF V +    EL  
Sbjct: 471 YINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEINGVVQEFSVGEIPMKELPL 530

Query: 577 IYDCL 581
           + D L
Sbjct: 531 VLDRL 535



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 205/423 (48%), Gaps = 76/423 (17%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIR--GFLETGK----MREAVDLYK 67
           +RL+ FC+ S   + +Y   +   ++ P    +N+ IR  G +E G       +A+ LYK
Sbjct: 58  TRLLYFCSFSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYK 117

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLR-FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
           QML N G  P+N T+P L K C+ L     +G  I  HVLK GF  D++V N++I +F++
Sbjct: 118 QML-NKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMN 176

Query: 127 CGDLGLACNVFDESCVRNLVSWNSL-------------------------------INGF 155
            G    A  VFDE  VR++VSWNS+                               I G 
Sbjct: 177 FGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGL 236

Query: 156 VRSGFPREAIRLFRDMQL----ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           V++G  +E++ +F +MQ     + V+PD++T+  ++SACA L  ++ G+ +H Y+ ++ +
Sbjct: 237 VQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDI 296

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
              V +  AL++MY KCG ++ A EIF+ M  K   + T MI  +A  GF          
Sbjct: 297 ECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGF---------- 346

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                                 K+A   F EM+  G+KP+ VT V  LSACS  G ++ G
Sbjct: 347 ---------------------GKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQG 385

Query: 332 IWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLA 389
                 +++  +    +     +VD+ ++     +AL +   MP +  +  + A++GG  
Sbjct: 386 RCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQ 445

Query: 390 LHG 392
           +HG
Sbjct: 446 MHG 448


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 295/557 (52%), Gaps = 49/557 (8%)

Query: 6   LISHGFAPSRLIAFCAISES----KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           +I  G      + F  IS +      L Y + +   V  P++  WN  I+   +      
Sbjct: 52  IIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSH 111

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
            +  + +M +  G  PD+FTYP + K C+       G  + G   + G D D+YV  ++I
Sbjct: 112 TLSAFARM-KAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLI 170

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++  CG++  A  VFD    RN+VSW +++ G+V  G   EA +LF +M    V     
Sbjct: 171 DMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVAS--- 227

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                                 W              N+++  +VK G L  A  +FD+M
Sbjct: 228 ----------------------W--------------NSMLQGFVKMGDLSGARGVFDAM 251

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K VVS TTMI GYAK G +  AR +FD   EK VV W+A+I GYVQ     +AL +F 
Sbjct: 252 PEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFL 311

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL---NVVLGTALVDMYA 358
           EM+   +KPD    V  +SA +QLG L+   W+  ++ K   +L   +V+   AL+DM A
Sbjct: 312 EMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVI--AALLDMNA 369

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCGN+ +AL++F E P R+ + Y ++I GL++HG+  +A++ F+ M+  GL PDE+ F  
Sbjct: 370 KCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTV 429

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           IL+AC   GLVDEGR YF  M   + +SP   HY+CMVDLL RSG + +A +LI+ +P  
Sbjct: 430 ILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWE 489

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
                WGAL  AC+L+G+  +GE  A +L EL+P ++  YVLL+++Y  +  W +   VR
Sbjct: 490 PHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVR 549

Query: 539 KMMEERGVEKTPGCSSI 555
             M ER V K PG S I
Sbjct: 550 SKMRERRVRKIPGSSKI 566


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/488 (37%), Positives = 287/488 (58%), Gaps = 6/488 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  + L+ G D   ++    I   +   DL  AC +FD+    ++  +N  I  F   G
Sbjct: 6   QIHAYSLRNGLDHTKFL----IEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIG 61

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P     L+  M  +   P++ +   +  ACA L ++  G+ +H +  +SG    +    
Sbjct: 62  HPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMT 121

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+DMY K G L SA ++FD M  + + +  ++I GYA+ G ++ A ++F+ +P + V+ 
Sbjct: 122 ALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVIS 181

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           W A+I GY Q  +  +AL +F  ++   G KP+ V+    L ACSQLGALD G  I  + 
Sbjct: 182 WTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYA 241

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM-PERNSLTYTAIIGGLALHGKALDA 397
               F  N  +  A+++++A+CGNI +A QVF E+  +RN  ++  +I GLA+HG+ +DA
Sbjct: 242 RNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDA 301

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  + +M+   + PD++TF+G+L AC HGG+V EGR+ F  M S F+++PKL+HY C+VD
Sbjct: 302 LQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVD 361

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+G L+EA  LI++MPMA D V+WG L  AC  HGNV +GE AA  L +L+P + G 
Sbjct: 362 LLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGN 421

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YV+L+N+Y  +  W    ++RKMM+   + K  G S IEV   ++EFIV D+      Q 
Sbjct: 422 YVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRITSRCVQP 481

Query: 578 YDCLVQLT 585
           +  L+ +T
Sbjct: 482 FLLLLHVT 489



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 182/402 (45%), Gaps = 69/402 (17%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L Y   +   +  P+ + +N  I+ F   G       LY QM   G + P+ +++  LF
Sbjct: 31  DLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCS-PNQYSFTFLF 89

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CASL   + G  +  H  K GF  DM+   A++ ++   G L  A  +FDE  VR++ 
Sbjct: 90  PACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIP 149

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERV------------------------------ 176
           +WNSLI G+ RSG    A+ LF  M +  V                              
Sbjct: 150 TWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEK 209

Query: 177 --EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
             +P+EV++  ++ AC+QL  L++G+ I  Y   +G      ++NA+++++ +CG +E A
Sbjct: 210 GTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEA 269

Query: 235 EEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           +++FD + +K  + S  TMI+G A  G                               R 
Sbjct: 270 QQVFDEIGSKRNLCSWNTMIMGLAVHG-------------------------------RC 298

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT-- 351
            +AL L+ +M    ++PD VT V  L AC+  G + +G  +   +E + F +   L    
Sbjct: 299 IDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESK-FQVAPKLEHYG 357

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            LVD+  + G + +A  +   MP   +S+ +  ++G  + HG
Sbjct: 358 CLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHG 399


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/532 (37%), Positives = 306/532 (57%), Gaps = 11/532 (2%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           +++P  F WN  I+        R+A+ L+  ML NG    D F+  L+ K C+ LG    
Sbjct: 55  IKDP--FLWNAVIKSHSHGADPRKALLLFCLMLENG-VLVDKFSMSLVLKACSRLGFAKE 111

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G ++ G ++K     D+++ N +I +++ CG LG A  VFD    R+ VS+NS+I+G+V+
Sbjct: 112 GMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK 171

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVP 216
            G    A  LF  M  E+   + +T   M+   AQ  D +N+  ++   + E  L     
Sbjct: 172 CGLVESAGELFDLMPREK--RNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISW-- 227

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
             N+++  YVK G++E A+ +FD M  + VV+   MI GY K G +  A+ +FD +P + 
Sbjct: 228 --NSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRD 285

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
           VV +N+++ G+VQ +   EAL +F+ M+  + + PD  T V  LSA +QLG L   I +H
Sbjct: 286 VVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMH 345

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +I ++ F L+  LG AL+DMY+KCG+I  A++VF  +  ++   + A+IGGLA+HG   
Sbjct: 346 LYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGE 405

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            A     ++    + PD ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CM
Sbjct: 406 SAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 465

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VD+L RSG +E A+ LI  MP+  + V+W     AC  H     GE  A  L+     + 
Sbjct: 466 VDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNP 525

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             YVLL+NMY  + MW++  +VR MM+E+ +EK PGCS IE++G ++EF+ R
Sbjct: 526 SSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEFLCR 577


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 203/585 (34%), Positives = 308/585 (52%), Gaps = 45/585 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGL----RFL 97
           ++  +N  I GF        A++L+ +M ++ G +PDNFT+     V A L L       
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKM-KHEGFKPDNFTFA---SVLAGLALVADDEKQ 167

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD----LGLACNVFDE-------------- 139
             +     LK G      V NA++ V+  C      L  A  VFDE              
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227

Query: 140 SCVRN------------------LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
             V+N                  LV++N++I+G+V  GF +EA+ + R M    +E DE 
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T   ++ ACA    L LG+++H Y+       +    N+L+ +Y KCGK + A  IF+ M
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKM 346

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K +VS   ++ GY   G +  A+ IF ++ EK ++ W  +I G  +    +E L LF 
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
            M+  G +P        + +C+ LGA  +G   H  + K  F+ ++  G AL+ MYAKCG
Sbjct: 407 CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCG 466

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            + +A QVF  MP  +S+++ A+I  L  HG   +A+  + EM+  G+ PD IT L +L+
Sbjct: 467 VVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLT 526

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H GLVD+GRKYF  M +++R+ P   HY+ ++DLL RSG   +AE +I S+P     
Sbjct: 527 ACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTA 586

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            +W AL   CR+HGN+ +G  AA KL  L P+  G Y+LL+NM+  +  WEE  +VRK+M
Sbjct: 587 EIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLM 646

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            +RGV+K   CS IE+   ++ F+V D SHPE E +Y  L  L +
Sbjct: 647 RDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGK 691



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 205/424 (48%), Gaps = 44/424 (10%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D      ++  + + GD+ LA  VF+++  C+R+ V +N++I GF  +     AI LF  
Sbjct: 79  DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 171 MQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           M+ E  +PD  T   +++  A + +D     + H    +SG      ++NAL+ +Y KC 
Sbjct: 139 MKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCA 198

Query: 230 K----LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWNAII 284
                L SA ++FD ++ K   S TTM+ GY K G+ D+  ++ + + +   +V +NA+I
Sbjct: 199 SSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMI 258

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI-EKENF 343
            GYV     +EAL +   M ++GI+ D  T    + AC+  G L  G  +H ++  +E+F
Sbjct: 259 SGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF 318

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMP----------------------------- 374
           + +     +LV +Y KCG   +A  +F +MP                             
Sbjct: 319 SFH--FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 375 --ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
             E+N L++  +I GLA +G   + +  FS M   G  P +  F G + +C   G    G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           ++Y AQ+  I      L   + ++ +  + G++EEA Q+ R+MP   D V W AL  A  
Sbjct: 437 QQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-CLDSVSWNALIAALG 494

Query: 493 LHGN 496
            HG+
Sbjct: 495 QHGH 498



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 170/395 (43%), Gaps = 53/395 (13%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L L R +H  I   G      + N L+D+Y K  +L  A ++FD +     ++ TTM+ G
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 256 YAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
           Y   G + +AR +F+  P   +  V +NA+I G+        A+ LF +M+  G KPD  
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 314 TTVHCLSACSQLGALDDG--IWIHRFIEKENFNLNVVLGTALVDMYAKCGN----IAKAL 367
           T    L+  + L A D+   +  H    K        +  ALV +Y+KC +    +  A 
Sbjct: 150 TFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSAR 208

Query: 368 QVFHEMPERNS--------------------------------LTYTAIIGGLALHGKAL 395
           +VF E+ E++                                 + Y A+I G    G   
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY-SC 454
           +A+     M+  G+  DE T+  ++ AC   GL+  G++  A    + R      H+ + 
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY---VLRREDFSFHFDNS 325

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           +V L  + G  +EA  +   MP A D+V W AL     L G VS G     KL+  + ++
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMP-AKDLVSWNAL-----LSGYVSSGHIGEAKLIFKEMKE 379

Query: 515 SGI--YVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             I  ++++ +   ++   EE  K+   M+  G E
Sbjct: 380 KNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            K++F  ++  N  SW + I G  E G   E + L+  M R G   P ++ +    K CA
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG-FEPCDYAFSGAIKSCA 428

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            LG    G +    +LK+GFD  +   NA+I ++  CG +  A  VF      + VSWN+
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           LI    + G   EA+ ++ +M  + + PD +T++ +++AC+    ++ GR+  ++ S   
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK--YFDSMET 546

Query: 211 LTLTVPLAN---ALMDMYVKCGKLESAEEIFDSMVNKTVVSC-TTMIVGYAKFGFLDI-- 264
           +    P A+    L+D+  + GK   AE + +S+  K        ++ G    G +++  
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGI 606

Query: 265 --ARKIFDDLPE 274
             A K+F  +PE
Sbjct: 607 IAADKLFGLIPE 618


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/555 (34%), Positives = 311/555 (56%), Gaps = 20/555 (3%)

Query: 32  TKILFNVQNP--NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
            ++LF+ Q P  +  SWN  + G+ + G ++EA +++ +M        ++ ++  +    
Sbjct: 49  ARLLFD-QMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-----PCKNSISWNGMLAAY 102

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
              G      E    + +   D ++   N ++  +V    L  A  +FD    R+ VSWN
Sbjct: 103 VQNGR----IEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 158

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+G+ ++G   EA RLF +  +     D  T   MVS   Q   L+  R +   + E 
Sbjct: 159 TMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQNGMLDEARRVFDGMPEK 214

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
                    NA++  YV+C +++ A E+F++M  + V S  TMI GYA+ G +  AR  F
Sbjct: 215 NSVSW----NAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 270

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D +P++  + W AII GY Q+   +EAL LF EM+  G + +  T    LS C+++ AL+
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  +H  + K        +G AL+ MY KCGNI  A  VF  + E+  +++  +I G A
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 390

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            HG   +A+  F  M   G++PD++T +G+LSAC H GLVD+G +YF  M+  + ++   
Sbjct: 391 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANS 450

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           KHY+CM+DLLGR+G L++A+ L+++MP   D   WGAL  A R+HGN  +GE+AA  + E
Sbjct: 451 KHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE 510

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           ++P +SG+YVLL+N+Y  S  W + G++R  M +RGV+K PG S +EV   ++ F V D 
Sbjct: 511 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDS 570

Query: 570 SHPELEQIYDCLVQL 584
            HPE ++IY  L +L
Sbjct: 571 VHPERDRIYTFLEEL 585



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 135/310 (43%), Gaps = 54/310 (17%)

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           V+   L +A  +FD M  + VVS   M+ GYA+ G++  A++IFD++P K  + WN ++ 
Sbjct: 41  VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLA 100

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
            YVQ  R ++A  LF        K D                     W       E  + 
Sbjct: 101 AYVQNGRIEDARRLFES------KAD---------------------W-------ELISW 126

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           N ++G      Y K   +  A  +F  MPER+ +++  +I G A +G+ L+A   F E  
Sbjct: 127 NCMMGG-----YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-- 179

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
               + D  T+  ++S     G++DE R+ F  M     +S     ++ ++    +   +
Sbjct: 180 --SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRM 232

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANM 524
           ++A +L  +MP   +V  W  +      +G+++     A    +  PQ DS  +  +   
Sbjct: 233 DQARELFEAMP-CQNVSSWNTMITGYAQNGDIA----QARNFFDRMPQRDSISWAAIIAG 287

Query: 525 YRDSNMWEEA 534
           Y  S   EEA
Sbjct: 288 YAQSGYGEEA 297


>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 512

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/430 (39%), Positives = 264/430 (61%), Gaps = 1/430 (0%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG I      +++ +FC   E  +++Y  ++   +  P  F WN  ++G+      +  V
Sbjct: 14  TGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGV 73

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            +Y  ML+N    PD +TYP L K          G E+  HV+K G   +++V NA+I++
Sbjct: 74  SMYLDMLKND-VLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINM 132

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG   +A  +FD S   ++V+WN++I+ + R     +   LF +M+ +RV P  VT+
Sbjct: 133 YSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTL 192

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + ++SAC++L+DL  G+++H YIS+  +   + + NAL+DMY  CG++  A  IF+SM +
Sbjct: 193 VSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMKS 252

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + V+S T ++ G+A  G LDIARK FD +PE+  V W A+I GY+Q    KEAL LFHEM
Sbjct: 253 RDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEM 312

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           Q + +KPD  T V  L+AC+QLGAL+ G W+  +I+K     +  +G AL+DMY KCGN+
Sbjct: 313 QTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNV 372

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            KA  +F+ MP  +  T+TA+I GLA++G   +A+  F +M+   + PDEIT++G+L AC
Sbjct: 373 EKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCAC 432

Query: 424 CHGGLVDEGR 433
            H G+VDEGR
Sbjct: 433 THTGMVDEGR 442



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 182/412 (44%), Gaps = 77/412 (18%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GD+  A  +FD      +  WN+++ G+ R   P+  + ++ DM    V PD  T   ++
Sbjct: 36  GDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLI 95

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
               +      G+E+H ++ + GL   V + NAL++MY  CG                  
Sbjct: 96  KGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCG------------------ 137

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                          D+AR IFD   +  VV WNA+I  Y + K+  +   LFHEM+   
Sbjct: 138 -------------LTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKR 184

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           + P +VT V  LSACS+L  L+ G  +H++I       N+++  AL+DMYA CG ++ AL
Sbjct: 185 VLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVAL 244

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS------------------------- 402
            +F  M  R+ +++TAI+ G A  G+   A  YF                          
Sbjct: 245 GIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKE 304

Query: 403 ------EMIGVGLMPDEITFLGILSACCHGGLVDEG---RKYFAQMSSIFRLSPKLKHY- 452
                 EM    + PDE T + IL+AC   G ++ G   R Y      I +   K   Y 
Sbjct: 305 ALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTY------IDKNKVKNDAYV 358

Query: 453 -SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + ++D+  + G +E+A  +  SMP   D   W A+     ++G    GE A
Sbjct: 359 GNALIDMYFKCGNVEKARSIFNSMP-RPDKFTWTAMIVGLAING---YGEEA 406



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 1/176 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            LD   K    +   +  SW   I G+L+    +EA+ L+ +M +    +PD FT   + 
Sbjct: 270 QLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEM-QTSNVKPDEFTMVSIL 328

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   LG  +  ++ K     D YV NA+I ++  CG++  A ++F+     +  
Sbjct: 329 TACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKF 388

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           +W ++I G   +G+  EA+ +F  M    V PDE+T +G++ AC     ++ GR +
Sbjct: 389 TWTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCACTHTGMVDEGRNL 444



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 7/269 (2%)

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           NK    C T      +FG ++ AR++FD +PE  V  WN ++ GY +    K  ++++ +
Sbjct: 24  NKIFSFCCTQ-----EFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLD 78

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M    + PD  T    +    +  A + G  +H  + K     NV +  AL++MY+ CG 
Sbjct: 79  MLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGL 138

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
              A  +F    + + +T+ A+I       +     + F EM    ++P  +T + +LSA
Sbjct: 139 TDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSA 198

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C     ++ G+K    +S    +   L   + ++D+    G +  A  +  SM  + DV+
Sbjct: 199 CSKLKDLESGQKVHKYISD-HVVQSNLIVENALIDMYAACGEMSVALGIFESMK-SRDVI 256

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELD 511
            W A+       G + I  +   ++ E D
Sbjct: 257 SWTAIVTGFANIGQLDIARKYFDQMPERD 285


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 184/500 (36%), Positives = 289/500 (57%), Gaps = 12/500 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   ++  GF    ++   ++  +++ G+L  A  VF+     +   WN +I G  +S 
Sbjct: 52  QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSE 111

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
            P + + L+  M     EP+E T   ++  CA+   L  G ++H  +  +G    V +  
Sbjct: 112 TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRT 171

Query: 220 ALMDMYVKCGK---LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           +L+++Y   G    +  A  +FD +V++ +VS  +++ GY + G +D AR+IFD++PE+ 
Sbjct: 172 SLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERN 231

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV W  +I G  Q  R K+AL LFHEM+  G+K D V  V  LSAC++LG L  G WIH 
Sbjct: 232 VVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS 291

Query: 337 FIEKE----NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           +I++     N  L V L  +L+ MYA CG I KA +VF  M +R+++++T++I G A  G
Sbjct: 292 YIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 351

Query: 393 KALDAISYFSEMIGVGL---MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            A +A+  F  M  +G     PD ITF+G+L AC H G VD+GR +F  M+  + + P++
Sbjct: 352 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 411

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL-L 508
           +HY CMVDLL R+G L+EA +L  SMPM  +  VWGAL   CR+H N  +    A KL L
Sbjct: 412 EHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVL 471

Query: 509 ELDP-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           EL P Q +G  VLL+N+Y  +  W++   VR+ M E GV K  G S +++NG++++F+  
Sbjct: 472 ELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAG 531

Query: 568 DKSHPELEQIYDCLVQLTRH 587
           D +H     +Y+ L ++TR 
Sbjct: 532 DWTHKHASSVYEMLSKITRQ 551



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 218/468 (46%), Gaps = 86/468 (18%)

Query: 4   TGLISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           T +I +GF+    +    +S    S NL    K+   ++NP++  WN  IRG  ++    
Sbjct: 55  TQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPH 114

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + V+LY +M+      P+ FTY  L   CA   L   G ++ G V+  G+  +++V  ++
Sbjct: 115 KLVELYNRMVE-AEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSL 173

Query: 121 IHV----------------------------------FVSCGDLGLACNVFDESCVRNLV 146
           +++                                  +V CGD+  A  +FDE   RN+V
Sbjct: 174 VNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVV 233

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW ++I G  + G  ++A+ LF +M+   V+ D+V ++  +SACA+L DL LG  IH YI
Sbjct: 234 SWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYI 293

Query: 207 SE----SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
            E        L V L N+L+ MY  CG ++ A ++F  M  ++ +S T+MI G+AK G  
Sbjct: 294 DERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG-- 351

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI---KPDAVTTVHCL 319
                                         ++EAL +F  MQ  G    +PD +T +  L
Sbjct: 352 -----------------------------HAEEALGVFQWMQRLGTDEGRPDGITFIGVL 382

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMPE 375
            ACS  G +D G     F E  N    +V        +VD+ ++ G + +A ++   MP 
Sbjct: 383 CACSHAGFVDQG---RHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPM 439

Query: 376 R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT-FLGILS 421
           + N   + A++GG  +H  A +  S+ ++ + + L PD+   +L +LS
Sbjct: 440 KPNDAVWGALLGGCRIHKNA-ELASHVAQKLVLELKPDQAAGYLVLLS 486



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK- 258
           ++IH  I  +G +    L   L+  Y+  G L +A ++F+ + N +      MI G+++ 
Sbjct: 51  KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQS 110

Query: 259 ---FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                 +++  ++ +   E     ++ +IGG  ++   +E   +   + A G   +    
Sbjct: 111 ETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVR 170

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              ++  +  G   DG+   R +  E  + N+V   +L+  Y +CG++  A ++F EMPE
Sbjct: 171 TSLVNLYAIAGGY-DGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPE 229

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           RN +++T +I G A  G+   A+  F EM   G+  D++  +  LSAC   G
Sbjct: 230 RNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 281


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 302/560 (53%), Gaps = 64/560 (11%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           +E +D +  + R G   P     PL+ K CA L     G ++  H +  G   D++V  A
Sbjct: 67  QELLDAFSSLHRRGSDVPPG-CVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTA 125

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLV-------------------------------SW 148
           ++  +   GD+  A  VFDE  V++ +                               SW
Sbjct: 126 LVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASW 185

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NS+I  +   G  +EA+RLFR M  E   P+ +T+  M S CA+  DL  G+     I+E
Sbjct: 186 NSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAE 245

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L   + +  ALM+MYVKC  +                               D AR+ 
Sbjct: 246 QDLQNMI-VHTALMEMYVKCRAI-------------------------------DEARRE 273

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD + ++ VV W+ +I GY Q  R  E+L LF  M+AT  KP+ VT V  LSAC+QLG+ 
Sbjct: 274 FDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSD 333

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G  I   +E +N  L   LG+AL+DMY KCG++ +A  VF+ M  +  +T+ +++ GL
Sbjct: 334 ELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGL 393

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           AL+G A DAI+ + EM    + P+EITF+ +L+AC H GLVD+G  +F +M +I  +SP+
Sbjct: 394 ALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQ 453

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++H +C+VDLL +SG L EA + I  M +  + V+W  L  ACR H +V + + AA KLL
Sbjct: 454 VEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLL 513

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
            L+P +S IYVLL+N+Y D+ +W +  ++R +M  + V+K    S IE++G +++F+V+D
Sbjct: 514 VLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQD 573

Query: 569 KSHPELEQIYDCLVQLTRHF 588
             HP+  +I++ +  +  H 
Sbjct: 574 TYHPKSAEIFNVVDGMGLHL 593


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/579 (31%), Positives = 320/579 (55%), Gaps = 35/579 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++GL   G   + L++    S+    D   K+   +   ++ +WN  I G++++G M 
Sbjct: 261 VVVSGLDFEGSIKNSLLSM--YSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLME 318

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           E++  + +M+ + G  PD  T+  L    +         +I  ++++    +D+++ +A+
Sbjct: 319 ESLIFFYEMI-SSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSAL 377

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I  +  C  + +A  +F +    ++V + ++I+G++ +G   +A+ +FR +   ++ P+E
Sbjct: 378 IDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNE 437

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +T++ ++     L  L LGRE+H +I + G      +  A++DMY KCG++         
Sbjct: 438 ITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRM--------- 488

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
                                 ++A +IF  L ++ +V WN++I    Q+     A+ +F
Sbjct: 489 ----------------------NLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIF 526

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            +M  +GI  D V+    LSAC+ L +   G  IH F+ K +  L+V   + L+DMYAKC
Sbjct: 527 RQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKC 586

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGI 419
           GN+  A+ VF  M E+N +++ +II     HGK  D++  F EM+   G  PD+ITFL I
Sbjct: 587 GNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEI 646

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           +S CCH G VDEG ++F  M+  + + P+ +HY+C+VDL GR+G L EA + ++SMP   
Sbjct: 647 ISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPP 706

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D  VWG L  A RLH NV + + A+ +L++LDP +SG YVL++N + ++  WE   KVR 
Sbjct: 707 DAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRS 766

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           +M+ER V+K PG S IE+N + + F+  D +HPE   IY
Sbjct: 767 LMKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIY 805



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 223/457 (48%), Gaps = 42/457 (9%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH- 104
           WN  I  F+  G + +A+  Y +ML   G  PD  T+P L K C +L   F G E     
Sbjct: 102 WNSIISSFVRMGLLNQALAFYFKML-CFGVSPDVSTFPCLVKACVALK-NFKGIEFLSDT 159

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           V  LG D + +V +++I  ++  G + +A  +FD    ++ V WN ++NG+ + G     
Sbjct: 160 VSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSV 219

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I+ F  M+++++ P+ VT   ++S CA    ++LG ++H  +  SGL     + N+L+ M
Sbjct: 220 IKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSM 279

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG+ + A ++F  M     V+   MI GY + G ++                     
Sbjct: 280 YSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLME--------------------- 318

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                     E+L  F+EM ++G+ PDA+T    L + S+   L+    IH +I + + +
Sbjct: 319 ----------ESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSIS 368

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L++ L +AL+D Y KC  ++ A ++F +    + + +TA+I G   +G  +DA+  F  +
Sbjct: 369 LDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWL 428

Query: 405 IGVGLMPDEITFLGILSACCHGGL--VDEGRKYFAQMSSIFRLSPKLKHYSC-MVDLLGR 461
           + V + P+EIT + IL     GGL  +  GR+    +  I +      +  C ++D+  +
Sbjct: 429 VKVKISPNEITLVSILPVI--GGLLALKLGRELHGFI--IKKGFDNRCNIGCAVIDMYAK 484

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
            G +  A ++   +    D+V W ++   C    N S
Sbjct: 485 CGRMNLAYEIFGRLS-KRDIVSWNSMITRCAQSDNPS 520



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 227/493 (46%), Gaps = 36/493 (7%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G+  + F  S LI   A  E   +D   K+   V   +   WNV + G+ + G     + 
Sbjct: 164 GMDCNEFVASSLIK--AYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIK 221

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
            +  ++R     P+  T+  +  VCAS  L  LG ++ G V+  G D +  + N+++ ++
Sbjct: 222 GF-SLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMY 280

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             CG    A  +F      + V+WN +I+G+V+SG   E++  F +M    V PD +T  
Sbjct: 281 SKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFS 340

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++ + ++ E+L   R+IH YI    ++L + L +AL+D Y KC  +  A++IF    + 
Sbjct: 341 SLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSV 400

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VV  T MI GY   G L+I                              +AL +F  + 
Sbjct: 401 DVVVFTAMISGYLHNG-LNI------------------------------DALEMFRWLV 429

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
              I P+ +T V  L     L AL  G  +H FI K+ F+    +G A++DMYAKCG + 
Sbjct: 430 KVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMN 489

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A ++F  + +R+ +++ ++I   A       AI  F +M   G+  D ++    LSAC 
Sbjct: 490 LAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACA 549

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           +      G+     M     L+  +   S ++D+  + G L+ A  +  +M    ++V W
Sbjct: 550 NLPSESFGKAIHGFMIK-HSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMK-EKNIVSW 607

Query: 485 GALFFACRLHGNV 497
            ++  A   HG +
Sbjct: 608 NSIIAAYGNHGKL 620



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 189/426 (44%), Gaps = 52/426 (12%)

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--ESC 141
           LL + C++L L   G ++   V+      D Y    ++ ++  CG       +F   +S 
Sbjct: 36  LLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSR 95

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           + ++  WNS+I+ FVR G   +A+  +  M    V PD  T   +V AC  L++      
Sbjct: 96  LSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEF 155

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +   +S  G+     +A++L+  Y++ GK++ A ++FD ++ K  V    M+ GYAK G 
Sbjct: 156 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGA 215

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            D                  ++I G             F  M+   I P+AVT    LS 
Sbjct: 216 SD------------------SVIKG-------------FSLMRMDQISPNAVTFDCVLSV 244

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+    +D G+ +H  +     +    +  +L+ MY+KCG    A+++F  M   +++T+
Sbjct: 245 CASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTW 304

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
             +I G    G   +++ +F EMI  G++PD ITF  +L +             F  +  
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSK----------FENLEY 354

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLE--------EAEQLIRSMPMAADVVVWGALFFACRL 493
             ++   +  +S  +D+   S L++           Q I S   + DVVV+ A+  +  L
Sbjct: 355 CRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAM-ISGYL 413

Query: 494 HGNVSI 499
           H  ++I
Sbjct: 414 HNGLNI 419


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/492 (36%), Positives = 278/492 (56%), Gaps = 9/492 (1%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG----- 159
           V+K       ++   +I V     D+  A  +F E    N   +N++I     +      
Sbjct: 11  VIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLT 70

Query: 160 --FPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
             F ++ +R +R+ Q     + PDE T   +V ACA+L   NLG+++H    + G    +
Sbjct: 71  IDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHL 130

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
              NAL+DMY KC  L  A  +FD M  +  +S   +I G+ + G +  AR +FD++P +
Sbjct: 131 ITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNR 190

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            +V W AII GY +     +AL +F EMQ  GI+PD  + +  L AC++LGAL+ G WIH
Sbjct: 191 TIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIH 250

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            F  +        +  AL++MY KCG I +A Q+F +M  R+ ++++ +IGGLA HGK  
Sbjct: 251 MFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVR 310

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           +AI+ F  M    + P+ ITF+G+LSAC H G  +EG  YF  M   F + P+++HY  +
Sbjct: 311 EAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSL 370

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLLGR+G L +A  ++  MPM  D  +WG+L  +CR H N+ +   A   L EL+P D+
Sbjct: 371 VDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDT 430

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
           G YVLL+N+Y D   W++  ++RK++  + ++KTPGCS IEVN +  EF+  D S P  +
Sbjct: 431 GNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSK 490

Query: 576 QIYDCLVQLTRH 587
           +I+  L  L  H
Sbjct: 491 EIFWLLELLAFH 502



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 200/410 (48%), Gaps = 73/410 (17%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
            L    F  +++I  C  +E  ++DY + +   V +PN++ +N  IR           +D
Sbjct: 15  ALSQSNFLVTKMIDVCDRNE--DMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTID 72

Query: 65  LYKQMLR---NGGTR-----PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
            YKQMLR   N  T      PD FT+P + K CA LGL  LG ++     K G    +  
Sbjct: 73  FYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLIT 132

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR------------------- 157
            NA+I ++  C +L  A N+FDE   R  +SWN +I+G VR                   
Sbjct: 133 ENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTI 192

Query: 158 -------SGFPR-----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
                  SG+ R     +A+ +FR+MQ+  +EPDE ++I ++ ACA+L  L  G+ IH +
Sbjct: 193 VSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMF 252

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
            + +GL     + NAL++MY KCG ++ A ++FD M  + V+S +TMI G A  G     
Sbjct: 253 CARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHG----- 307

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                     + +EA+A+F  M+ T IKP+ +T V  LSAC+  
Sbjct: 308 --------------------------KVREAIAIFERMKQTNIKPNGITFVGLLSACAHA 341

Query: 326 GALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
           G  ++G+     ++K+ +    +    +LVD+  + G +++AL +  +MP
Sbjct: 342 GFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMP 391



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 110/258 (42%), Gaps = 33/258 (12%)

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H  + K   + +  L T ++D+  +  ++  A  +F E+ + N+  Y A+I     +   
Sbjct: 8   HALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMY 67

Query: 395 LDAISYFSEMIGVG---------LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
              I ++ +M+            ++PDE TF  ++ AC   GL + G++  AQ    F+ 
Sbjct: 68  SLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQ---FFKF 124

Query: 446 SPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE-R 502
             K  L   + ++D+  +   L +A  L   M         GA+ +   + G+V +G+ R
Sbjct: 125 GKKSHLITENALIDMYTKCDNLLDAHNLFDEMHER------GAISWNGIISGHVRLGQMR 178

Query: 503 AAMKLLELDPQDSGI-YVLLANMYRDSNMWEEAGKVRKMMEERGVEKT--------PGCS 553
            A  L +  P  + + +  + + Y     + +A  V + M+  G+E          P C+
Sbjct: 179 RARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACA 238

Query: 554 ---SIEVNGLLYEFIVRD 568
              ++E    ++ F  R+
Sbjct: 239 KLGALETGKWIHMFCARN 256


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/505 (37%), Positives = 301/505 (59%), Gaps = 9/505 (1%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGF---DVDMYVHNAVIHVFVSCGDLGLACNVFDE-- 139
           L + CA       G ++   +L  G      + ++ NA+ H++ SCG    A ++F +  
Sbjct: 21  LLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQIP 80

Query: 140 SCVRNLVSWNSLINGFVRSGF-PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
              +++  W +L+   V+ G  P E    F++M+ E V  D+V MI +   C ++EDL +
Sbjct: 81  RSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGM 140

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           GR+    + + GL L V + NA+M+MYVKCG +E    +F  M  + VVS +T++ G  K
Sbjct: 141 GRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVK 200

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIKPDAVTTVH 317
           +  ++  R +FD++PE+  V W  +I GYV    S+E   L  EM     +  + VT   
Sbjct: 201 WEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSS 260

Query: 318 CLSACSQLGALDDGIWIHRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
            LSAC+Q G +  G W+H + ++     +++++GTALVDMYAKCG I  A +VF  +P+R
Sbjct: 261 ILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKR 320

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           N + + A++GGLA+HG+    +  F +MI     PD++TF+ +LSAC H GLVD+G  YF
Sbjct: 321 NVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYF 379

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             + S +  +PK++HY+CMVD+LGR+G LEEA  LI+ MPM  + VV G+L  +C  HG 
Sbjct: 380 RSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGK 439

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           + +GER   +L+++D  ++  +VLL+NMY      ++A  +R++++ +G+ K PG SSI 
Sbjct: 440 LQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIY 499

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCL 581
           V G +++F   DKSHP  ++IY  L
Sbjct: 500 VGGNIHQFSAGDKSHPLTKEIYHAL 524



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 187/423 (44%), Gaps = 82/423 (19%)

Query: 12  APSRLIAFCAISES-KNLDYCTKILFNVQNPNSFS----WNVAIRGFLETG-KMREAVDL 65
           A   L A C ++ S ++L Y        Q P S      W   +   ++ G K  E    
Sbjct: 58  ALHHLYASCGVTSSARHLFY--------QIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFF 109

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           +K+M R  G   D+     +F +C  +    +G +  G ++K+G  + + V NA+++++V
Sbjct: 110 FKEM-RKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYV 168

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSL-------------------------------ING 154
            CG +     VF E   RN+VSW++L                               I G
Sbjct: 169 KCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAG 228

Query: 155 FVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWY-ISESGLT 212
           +V +GF RE   L  +M L  R+  + VT+  ++SACAQ  D+ +GR +H Y +   G  
Sbjct: 229 YVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGRE 288

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           + + +  AL+DMY KCG ++ A ++F  +  + VV+                        
Sbjct: 289 MHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVA------------------------ 324

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  WNA++GG     R K  L +F +M     KPD +T +  LSACS  G +D G 
Sbjct: 325 -------WNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGY 376

Query: 333 WIHRFIEKENFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL 390
              R +E E      +   A +VD+  + G++ +A+ +  +MP   N +   +++G    
Sbjct: 377 HYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNA 436

Query: 391 HGK 393
           HGK
Sbjct: 437 HGK 439


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/515 (36%), Positives = 294/515 (57%), Gaps = 7/515 (1%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P   +Y  +F+         LG +    ++  G   + ++   ++ ++ S GDL  A  V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREA---IRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           FD     + + +NS+I  + R G        +  +  M    +  D  T+  ++ +CA L
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             + +GR +H      GL     +  +L+DMYVKCG +  A ++FD M+ + + S   +I
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALI 254

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPD 311
            GY K G + +A  +F+ +  + +V W A+I GY Q   +++AL LF EM   G  +KP+
Sbjct: 255 AGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPN 314

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            VT V  L AC+Q  AL+ G  IH F      +LN  + TAL  MYAKC ++ +A   F 
Sbjct: 315 WVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374

Query: 372 EMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
            + +  +N + +  +I   A HG  ++A+S F  M+  G+ PD +TF+G+LS C H GL+
Sbjct: 375 MIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLI 434

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           D G  +F  M +I  + P+++HY+C+VDLLGR+G L EA++LI  MPM A   VWGAL  
Sbjct: 435 DAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 494

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR H N+ I E AA +L  L+P +SG YVLL+N+Y ++ MWEE  K+R +++ +G++K+
Sbjct: 495 ACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKS 554

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           PGCS IE+NG  + F+  DKSHP+ ++IY  L  L
Sbjct: 555 PGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEAL 589



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 181/412 (43%), Gaps = 71/412 (17%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL  + F  ++++A  A   S +LD    +   + NP+S  +N  IR +   G   
Sbjct: 103 IVLHGLQPNAFLAAKMVAMYA--SSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXX 160

Query: 61  EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
                 +   R    G   DNFT P + K CA L    +G  + G  L++G + D YV  
Sbjct: 161 XXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGA 220

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL--------------------------- 151
           ++I ++V CG +G A  +FD+  VR++ SWN+L                           
Sbjct: 221 SLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVS 280

Query: 152 ----INGFVRSGFPREAIRLFRDMQLE--RVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
               I+G+ ++GF  +A+ LF +M  +   ++P+ VT++ ++ ACAQ   L  GR IH +
Sbjct: 281 WTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDF 340

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN--KTVVSCTTMIVGYAKFGFLD 263
            +  GL L   +  AL  MY KC  L  A   FD +    K +++  TMI  YA  G   
Sbjct: 341 ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGC-- 398

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
                                          EA+++F  M   G++PDAVT +  LS CS
Sbjct: 399 -----------------------------GVEAVSIFENMLRAGVQPDAVTFMGLLSGCS 429

Query: 324 QLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
             G +D G+   +      +    V     +VD+  + G + +A ++  +MP
Sbjct: 430 HSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMP 481


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 179/477 (37%), Positives = 276/477 (57%), Gaps = 16/477 (3%)

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           + S G L  +  +F  +   N+  W  +IN          A+  +  M    ++P+  T+
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ AC     L+  R +H +  + GL+  + ++  L+D Y + G + SA+++FD+M  
Sbjct: 125 SSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +++VS T M+  YAK G L  AR +F+ +  K VV WN +I GY Q     EAL  F +M
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240

Query: 304 QAT-------GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
                      ++P+ +T V  LS+C Q+GAL+ G W+H ++E     +NV +GTALVDM
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDM 300

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCG++  A +VF  M  ++ + + ++I G  +HG + +A+  F EM  +G+ P +ITF
Sbjct: 301 YCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITF 360

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + +L+AC H GLV +G + F  M   + + PK++HY CMV+LLGR+G ++EA  L+RSM 
Sbjct: 361 VAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSME 420

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           +  D V+WG L +ACR+H NVS+GE  A  L+      SG YVLL+NMY  +  W    K
Sbjct: 421 VEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAK 480

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT-----RHF 588
           VR MM+  GVEK PGCSSIEV   ++EF+  D+ HP  + IY  L ++      RH+
Sbjct: 481 VRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHY 537



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 146/343 (42%), Gaps = 74/343 (21%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +L +   +     NPN F W   I           A+  Y QML +   +P+ FT   L 
Sbjct: 70  HLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHP-IQPNAFTLSSLL 128

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C     R     +  H +K G    +YV   ++  +   GD+  A  +FD    R+LV
Sbjct: 129 KACTLHPAR----AVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLV 184

Query: 147 S-------------------------------WNSLINGFVRSGFPREAIRLFRD----- 170
           S                               WN +I+G+ + G P EA+  FR      
Sbjct: 185 SYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMM 244

Query: 171 --MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
                 +V P+E+T++ ++S+C Q+  L  G+ +H Y+  +G+ + V +  AL+DMY KC
Sbjct: 245 GGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKC 304

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G LE A ++FD M  K VV+  +MI+GY   GF D                         
Sbjct: 305 GSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSD------------------------- 339

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                 EAL LFHEM   G+KP  +T V  L+AC+  G +  G
Sbjct: 340 ------EALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKG 376



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 104/203 (51%), Gaps = 7/203 (3%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNG------GTRPDNFTYPLLFKVCASLGLRFLGY 99
           WNV I G+ + G   EA+  +++M+           RP+  T   +   C  +G    G 
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            +  +V   G  V++ V  A++ ++  CG L  A  VFD    +++V+WNS+I G+   G
Sbjct: 277 WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHG 336

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLA 218
           F  EA++LF +M    V+P ++T + +++ACA    ++ G E+   + +  G+   V   
Sbjct: 337 FSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHY 396

Query: 219 NALMDMYVKCGKLESAEEIFDSM 241
             ++++  + G+++ A ++  SM
Sbjct: 397 GCMVNLLGRAGRMQEAYDLVRSM 419



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 27/188 (14%)

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           IH  + +   + + +L   L   YA  G++  ++ +FH  P  N   +T II   A    
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACC----------------------HGGLVDE 431
              A+SY+S+M+   + P+  T   +L AC                         GLVD 
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDA 161

Query: 432 GRK--YFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             +    A    +F   P+  L  Y+ M+    + G+L EA  L   M M  DVV W  +
Sbjct: 162 YARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGM-KDVVCWNVM 220

Query: 488 FFACRLHG 495
                 HG
Sbjct: 221 IDGYAQHG 228


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 295/538 (54%), Gaps = 35/538 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  + G+   G    A+     M   GG RP+  T   L  + A  G  F G  +  +
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 105 VLKLGFDVD---MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            L+   D +   + +  A++ ++  C  L  AC VF    VRN V+W++LI GFV     
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRM 286

Query: 162 REAIRLFRDMQLERVEPDEVTMIG-MVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            EA  LF+DM +E +     T +   +  CA L DL +G ++H  +++SG+   +   N+
Sbjct: 287 TEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNS 346

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+ MY                               AK G ++ A  +FD++  K  + +
Sbjct: 347 LLSMY-------------------------------AKAGLINEATMLFDEIAIKDTISY 375

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A++ GYVQ  +++EA  +F +MQA  ++PD  T V  + ACS L AL  G   H  +  
Sbjct: 376 GALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVII 435

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               L   +  +L+DMYAKCG I  + QVF +MP R+ +++  +I G  +HG   +A + 
Sbjct: 436 RGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTL 495

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  M   G  PD++TF+ +++AC H GLV EG+ +F  M+  + + P+++HY CMVDLL 
Sbjct: 496 FLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLA 555

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R G L+EA Q I+SMP+ ADV VWGAL  ACR+H N+ +G++ +  + +L P+ +G +VL
Sbjct: 556 RGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVL 615

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           L+N++  +  ++EA +VR + + +G +K+PGCS IE+NG L+ F+  D+SHP    IY
Sbjct: 616 LSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIY 673



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 237/502 (47%), Gaps = 51/502 (10%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   +  P++ ++N  IR +   G    A+DLY+ ML      P+ +T+P + K C++L
Sbjct: 54  QVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFR-VPPNKYTFPFVLKACSAL 112

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  I  H   +G   D++V  A+I +++ C   G A NVF +  +R++V+WN+++
Sbjct: 113 ADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAML 172

Query: 153 NGFVRSGFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
            G+   G    AI    DMQ +R  + P+  T++ ++   AQ   L  G  +H Y   + 
Sbjct: 173 AGYANHGMYHHAIAHLLDMQ-DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAY 231

Query: 211 LTLT---VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           L      V +  AL+DMY KC  L  A  +F  M  +  V+                   
Sbjct: 232 LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVT------------------- 272

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV-HCLSACSQLG 326
                       W+A+IGG+V   R  EA  LF +M   G+   + T+V   L  C+ L 
Sbjct: 273 ------------WSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLA 320

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            L  G  +H  + K   + ++  G +L+ MYAK G I +A  +F E+  +++++Y A++ 
Sbjct: 321 DLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLS 380

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-L 445
           G   +GKA +A   F +M    + PD  T + ++ AC H   +  GR   +  S I R L
Sbjct: 381 GYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGR--CSHGSVIIRGL 438

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-- 503
           + +    + ++D+  + G ++ + Q+   MP A D+V W  +     +HG   +G+ A  
Sbjct: 439 ALETSICNSLIDMYAKCGRIDLSRQVFDKMP-ARDIVSWNTMIAGYGIHG---LGKEATT 494

Query: 504 ---AMKLLELDPQDSGIYVLLA 522
              +MK    +P D     L+A
Sbjct: 495 LFLSMKNQGFEPDDVTFICLIA 516



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 185/385 (48%), Gaps = 34/385 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++ K+L Y  ++   +   N  +W+  I GF+   +M EA +L+K ML  G       + 
Sbjct: 250 AKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSV 309

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
               +VCASL    +G ++   + K G   D+   N+++ ++   G +  A  +FDE  +
Sbjct: 310 ASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAI 369

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           ++ +S+ +L++G+V++G   EA  +F+ MQ   V+PD  TM+ ++ AC+ L  L  GR  
Sbjct: 370 KDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCS 429

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  +   GL L   + N+L+DMY KCG+++ + ++FD M  + +VS  TMI GY   G  
Sbjct: 430 HGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGL- 488

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                          KEA  LF  M+  G +PD VT +  ++AC
Sbjct: 489 ------------------------------GKEATTLFLSMKNQGFEPDDVTFICLIAAC 518

Query: 323 SQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-T 380
           S  G + +G  W      K      +     +VD+ A+ G + +A Q    MP +  +  
Sbjct: 519 SHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRV 578

Query: 381 YTAIIGGLALHGKALDAISYFSEMI 405
           + A++G   +H K +D     S MI
Sbjct: 579 WGALLGACRIH-KNIDLGKQVSRMI 602



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 175/369 (47%), Gaps = 38/369 (10%)

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
           ++ G L LA  VFD     +  ++N+LI  +   G    AI L+R M   RV P++ T  
Sbjct: 44  IARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFP 103

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++ AC+ L DL  GR IH + +  GL   + ++ AL+D+Y++C +   A  +F  M  +
Sbjct: 104 FVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR 163

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
            VV+   M+ GYA  G                                   A+A   +MQ
Sbjct: 164 DVVAWNAMLAGYANHGMY-------------------------------HHAIAHLLDMQ 192

Query: 305 AT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN---VVLGTALVDMYAKC 360
              G++P+A T V  L   +Q GAL  G  +H +  +   + N   V++GTAL+DMYAKC
Sbjct: 193 DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC 252

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEITFLGI 419
            ++  A +VFH M  RN +T++A+IGG  L  +  +A + F +M+  G+      +    
Sbjct: 253 KHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASA 312

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L  C     +  G +  A ++    +   L   + ++ +  ++GL+ EA  L   + +  
Sbjct: 313 LRVCASLADLRMGTQLHALLAKS-GIHADLTAGNSLLSMYAKAGLINEATMLFDEIAI-K 370

Query: 480 DVVVWGALF 488
           D + +GAL 
Sbjct: 371 DTISYGALL 379



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G +A A QVF  +P  ++  Y A+I   +  G    AI  +  M+   + P++ TF  +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
            AC     +  GR   A  +++  L   L   + ++DL  R      A  +   MPM  D
Sbjct: 107 KACSALADLCAGRTIHAHAAAV-GLHTDLFVSTALIDLYIRCARFGPAANVFAKMPM-RD 164

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           VV W A+      HG   +   A   LL++  QD G
Sbjct: 165 VVAWNAMLAGYANHG---MYHHAIAHLLDM--QDRG 195


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 311/554 (56%), Gaps = 33/554 (5%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
             I +N+ + ++ SWN  + GF++ G   EA+  Y +M R+ G +PD      +    A 
Sbjct: 373 ANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM-RDAGQKPDLVAVISIIAASAR 431

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
            G    G +I  + +K G D D+ V N+++ ++     +     +FD+   +++VSW ++
Sbjct: 432 SGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTI 491

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I G  ++G    A+ LFR++QLE ++ D + +  ++ AC+ L+ ++  +EIH YI   GL
Sbjct: 492 IAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL 551

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           +  V L N ++D+Y +CG +                               D A ++F+ 
Sbjct: 552 SDLV-LQNGIVDVYGECGNV-------------------------------DYAARMFEL 579

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +  K VV W ++I  YV    + EAL LFH M+ TG++PD+++ V  LSA + L AL  G
Sbjct: 580 IEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG 639

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             IH F+ ++ F L   L + LVDMYA+CG + K+  VF+ +  ++ + +T++I    +H
Sbjct: 640 KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMH 699

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G    AI  F  M    + PD I F+ +L AC H GL++EGR++   M   ++L P  +H
Sbjct: 700 GCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEH 759

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y C+VDLLGR+  LEEA Q ++ M +     VW AL  AC++H N  +GE AA KLLE+D
Sbjct: 760 YVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMD 819

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P++ G YVL++N+Y     W++  +VR  M+  G++K PGCS IEV   ++ F+ RDKSH
Sbjct: 820 PENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSH 879

Query: 572 PELEQIYDCLVQLT 585
           P+  +IY  L Q+T
Sbjct: 880 PQSYEIYSKLSQIT 893



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 228/456 (50%), Gaps = 37/456 (8%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F+WN  I  ++  G+   +++LY++M R  G   D  T+P + K C  L  R  G E+ G
Sbjct: 182 FTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRCGAEVHG 240

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-NLVSWNSLINGFVRSGFPR 162
             +K G+   ++V N+++ ++  C DL  A  +FD    + ++VSWNS+I+ +  +G   
Sbjct: 241 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSI 300

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+RLF +MQ   + P+  T +  + AC     +  G  IH  + +S   + V +ANAL+
Sbjct: 301 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 360

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            MY + GK+  A  IF +M +   +S                               WN+
Sbjct: 361 AMYARFGKMGEAANIFYNMDDWDTIS-------------------------------WNS 389

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           ++ G+VQ     EAL  +HEM+  G KPD V  +  ++A ++ G   +G+ IH +  K  
Sbjct: 390 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNG 449

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            + ++ +G +LVDMYAK  ++     +F +MP+++ +++T II G A +G    A+  F 
Sbjct: 450 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 509

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           E+   G+  D +    IL AC    L+   ++  + +  I +    L   + +VD+ G  
Sbjct: 510 EVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYI--IRKGLSDLVLQNGIVDVYGEC 567

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           G ++ A ++   +    DVV W ++  +C +H  ++
Sbjct: 568 GNVDYAARMFELIEF-KDVVSWTSM-ISCYVHNGLA 601



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 226/452 (50%), Gaps = 37/452 (8%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I  +   G+  EA+ L+ +M +     P+ +T+    + C        G  I   
Sbjct: 285 SWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 343

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           VLK  + ++++V NA+I ++   G +G A N+F      + +SWNS+++GFV++G   EA
Sbjct: 344 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 403

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           ++ + +M+    +PD V +I +++A A+  +   G +IH Y  ++GL   + + N+L+DM
Sbjct: 404 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDM 463

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y K   ++  + IFD M +K VVS TT+I G+A+ G                        
Sbjct: 464 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG------------------------ 499

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
                      AL LF E+Q  GI  D +     L ACS L  +     IH +I ++  +
Sbjct: 500 -------SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS 552

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            ++VL   +VD+Y +CGN+  A ++F  +  ++ +++T++I     +G A +A+  F  M
Sbjct: 553 -DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLM 611

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDLLGRSG 463
              G+ PD I+ + ILSA      + +G++     +   F L   L   S +VD+  R G
Sbjct: 612 KETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--STLVDMYARCG 669

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            LE++  +   +    D+V+W ++  A  +HG
Sbjct: 670 TLEKSRNVFNFI-RNKDLVLWTSMINAYGMHG 700



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 208/446 (46%), Gaps = 43/446 (9%)

Query: 49  AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT----YPLLFKVCASLGLRFLGYEIFGH 104
           ++R   + G + EA      +  N    P  F+    Y  + ++C S      G ++  H
Sbjct: 82  SLREICKRGSVNEAFQSLTDLFAN--QSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAH 139

Query: 105 VLKLG--FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
           ++     F+  +++   ++ ++  CG L  A  +FD    + + +WN++I  +V +G P 
Sbjct: 140 MITSNALFN-SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL 198

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
            ++ L+R+M++  +  D  T   ++ AC  L+D   G E+H    + G    V +AN+++
Sbjct: 199 GSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIV 258

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWN 281
            MY KC  L  A ++FD M                               PEK  VV WN
Sbjct: 259 GMYTKCNDLNGARQLFDRM-------------------------------PEKEDVVSWN 287

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           ++I  Y    +S EAL LF EMQ   + P+  T V  L AC     +  G++IH  + K 
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
           ++ +NV +  AL+ MYA+ G + +A  +F+ M + +++++ +++ G   +G   +A+ ++
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM   G  PD +  + I++A    G    G +  A  +    L   L+  + +VD+  +
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA-YAMKNGLDSDLQVGNSLVDMYAK 466

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGAL 487
              ++  + +   MP   DVV W  +
Sbjct: 467 FCSMKYMDCIFDKMP-DKDVVSWTTI 491



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 7/263 (2%)

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G+   A  I  + +  +V   T ++  Y K G L  A K+FD +P K +  WNA+IG YV
Sbjct: 133 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 192

Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
                  +L L+ EM+ +GI  DA T    L AC  L     G  +H    KE +   V 
Sbjct: 193 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVF 252

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           +  ++V MY KC ++  A Q+F  MPE+ + +++ ++I   + +G++++A+  F EM   
Sbjct: 253 VANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKA 312

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLL 465
            L P+  TF+  L AC     + +G    A   ++ + S  +  +  + ++ +  R G +
Sbjct: 313 SLAPNTYTFVAALQACEDSSFIKQGMFIHA---TVLKSSYYINVFVANALIAMYARFGKM 369

Query: 466 EEAEQLIRSMPMAADVVVWGALF 488
            EA  +  +M    D + W ++ 
Sbjct: 370 GEAANIFYNMD-DWDTISWNSML 391


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 204/599 (34%), Positives = 318/599 (53%), Gaps = 46/599 (7%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   K+  ++   N  +WN  I G+++ G  +EA+D++  M R  G  P   T      
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM-RVEGIEPTRVTVASFLS 291

Query: 88  VCASLGLRFLGYEIFGHVLKL--GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
             A+L     G +  GH + +    D+D  + +++I+ +   G +  A  VF     +++
Sbjct: 292 ASANLDALIEGKQ--GHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDV 349

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           V+WN LI+ +V+     +A+ +   M+ E +  D VT+  ++SA A   ++ LG+E H Y
Sbjct: 350 VTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCY 409

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
                L   V +AN+++DMY KC +++ A ++FDS   + +V   T++  YA+ G    A
Sbjct: 410 CIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEA 469

Query: 266 RKIF-----DDLPEKYVVPWNAIIGGYV---QAKRSK----------------------- 294
            K+F     D +P   V+ WN++I G++   Q   +K                       
Sbjct: 470 LKLFYQMQFDSVPPN-VISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLIS 528

Query: 295 ---------EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                    EA+  F +MQ  GI+P   +    L AC+ + +L  G  IH FI +  F L
Sbjct: 529 GLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCL 588

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           +V + T+LVDMYAKCG+I +A +VFH M  +    Y A+I   ALHG+A++A++ F  + 
Sbjct: 589 SVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQ 648

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ PD ITF  ILSAC H GLV+EG   FA M S   ++P ++HY C+V LL R G L
Sbjct: 649 KEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNL 708

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
           +EA +LI +MP   D  + G+L  ACR H  + +GE  +  L +L+P +SG YV L+N Y
Sbjct: 709 DEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAY 768

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             +  W E   +R +M+ RG+ K PGCS I+  G L  F+  D SHP+ E+IY  L  L
Sbjct: 769 AAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAML 827



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 233/469 (49%), Gaps = 35/469 (7%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +  ++L+ F A  +    +   ++   ++  N FSW   +      G   +A+  + +M 
Sbjct: 117 YVETKLVVFYAKCDFP--EVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQ 174

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
            NG   PDNF  P + K C SL L  LG  + G+VLK+GF   ++V ++++ ++  CG L
Sbjct: 175 ENG-VFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVL 233

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  VFD    +N+V+WNS+I G+V++G  +EAI +F DM++E +EP  VT+   +SA 
Sbjct: 234 EDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSAS 293

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A L+ L  G++ H     + L L   L +++++ Y K G +E AE +F  M+        
Sbjct: 294 ANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRML-------- 345

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                  EK VV WN +I  YVQ  +  +AL + H M++  ++ 
Sbjct: 346 -----------------------EKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRF 382

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D+VT    LSA +    +  G   H +  + N   +VV+  +++DMYAKC  I  A +VF
Sbjct: 383 DSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVF 442

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
               ER+ + +  ++   A  G + +A+  F +M    + P+ I++  ++      G V+
Sbjct: 443 DSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVN 502

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           E +  F+QM S+    P L  ++ ++  L +SG   EA    + M  A 
Sbjct: 503 EAKDMFSQMQSL-GFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAG 550



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 209/445 (46%), Gaps = 40/445 (8%)

Query: 50  IRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL 108
           I    + G ++E+V L  +M   +    P+   Y  L + C        G +I   +LK 
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPE--IYGELLQGCVYERALHTGQQIHARILKN 108

Query: 109 G--FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
           G  F  + YV   ++  +  C    +A  +F    VRN+ SW +++    R GF  +A+ 
Sbjct: 109 GDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALL 168

Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
            F +MQ   V PD   +  ++ AC  L+ + LG+ +H Y+ + G    V ++++L+DMY 
Sbjct: 169 GFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYG 228

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           KCG LE A ++FDSMV K VV+  +MIVGY + G                          
Sbjct: 229 KCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGL------------------------- 263

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
                 ++EA+ +F++M+  GI+P  VT    LSA + L AL +G   H      + +L+
Sbjct: 264 ------NQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLD 317

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            +LG+++++ Y+K G I  A  VF  M E++ +T+  +I     H +   A++    M  
Sbjct: 318 NILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRS 377

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLKHYSCMVDLLGRSGLL 465
             L  D +T   ILSA      +  G++       I R L   +   + ++D+  +   +
Sbjct: 378 ENLRFDSVTLSSILSASAVTSNIKLGKE--GHCYCIRRNLESDVVVANSIIDMYAKCERI 435

Query: 466 EEAEQLIRSMPMAADVVVWGALFFA 490
           ++A ++  S     D+V+W  L  A
Sbjct: 436 DDARKVFDS-TTERDLVLWNTLLAA 459


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 294/544 (54%), Gaps = 41/544 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++F WN  +R        R    LY   +R     PD +T+P + K C       +G  +
Sbjct: 81  HAFPWNTLVRLHAAASPRRSL--LYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G  ++ G D D++  NA+I  +   GD      VFD   VR+LVSWNS++ G+V  G  
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAGYVGCGEV 197

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A  LF +M+    + D  +   M+    ++                            
Sbjct: 198 DLAQDLFDEMR----QRDAFSWATMIDGYGEM---------------------------- 225

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
                  G ++ A E+FD M ++ +V   +MI GYA+ G +D AR +F+++PE+ V+ W+
Sbjct: 226 ------AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWS 279

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            +I GYV+     EAL  F  M   GIKPD V  V  ++AC+QLGAL+ G W+H ++EK+
Sbjct: 280 IVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKK 339

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               +VV+ TAL+DMY KCG +  A  +F  MP+++ +T+  +I GL  HG  LDAI  F
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLF 399

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           ++M       D+++ L +L++C H GLV EG   F +M     L PK++HY  ++DLLGR
Sbjct: 400 NQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGR 459

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G +++A   I +MPM     +WG+L  +CR H  V + E +  +L  L   DSG+YVLL
Sbjct: 460 AGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLL 519

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +N+Y D  MW++  ++RK+M   G++K  G S IEV+G ++EF+    SHP  E+IY  L
Sbjct: 520 SNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579

Query: 582 VQLT 585
             L+
Sbjct: 580 WNLS 583


>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
          Length = 494

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 175/449 (38%), Positives = 275/449 (61%), Gaps = 4/449 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
            ++S     VSW S I    R+G   EA + F  M+L  VEP+ +T I ++S C  +   
Sbjct: 22  LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSG 81

Query: 197 N--LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           +  LG  +H Y  + GL  T V +  A++ MY K G+   A  +FD M +K  V+  TMI
Sbjct: 82  SEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMI 141

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + G ++ A K+FD++PE+ ++ W A+I G+V+    +EALA F EMQ +G+KPD V
Sbjct: 142 DGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYV 201

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             +  L+AC+ LGAL  G+W+HR++  ++F  N+ +  +L+D+Y +CG +  A +VF +M
Sbjct: 202 AIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKM 261

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ ++I G A +G A +++ YF +M   G  PD +TF G L+AC H GLV+EG 
Sbjct: 262 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL 321

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M    R+SP+++HY C+VDL  R+G LE+A  +++SMPM  + VV G+L  ACR 
Sbjct: 322 RYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRN 381

Query: 494 HGNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           HGN ++  ER    L +L+ +    YV+L+NMY    +WE A K+R+ M+  G++K PG 
Sbjct: 382 HGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGIWEGASKMRRKMKGLGLKKQPGF 441

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SS+E++   + F+  D +H E   I + L
Sbjct: 442 SSVEIDDCTHVFMAGDSAHVETAYIREVL 470



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 190/415 (45%), Gaps = 69/415 (16%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S  + F    +S  +    K L    +  + SW   I      G++ EA   +  M R  
Sbjct: 2   SHTVPFVTRQKSSQIQRILK-LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSM-RLA 59

Query: 74  GTRPDNFTYPLLFKVCA--SLGLRFLGYEIFGHVLKLGFD----------VDMYVH---- 117
           G  P++ T+  L   C   S G   LG  + G+  KLG D          + MY      
Sbjct: 60  GVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRF 119

Query: 118 ------------------NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
                             N +I  ++  G +  A  +FDE   R+L+SW ++INGFV+ G
Sbjct: 120 GKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKG 179

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
           F  EA+  FR+MQ+  V+PD V +I  ++AC  L  L+ G  +H Y+        + ++N
Sbjct: 180 FHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSN 239

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+D+Y +CG +E A E+FD M  +TVVS  ++IVG+A  G                   
Sbjct: 240 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANG------------------- 280

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                        + E+L  F +MQ  G KPDAVT    L+ACS +G +++G+   + ++
Sbjct: 281 ------------NAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMK 328

Query: 340 KEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHG 392
           +++  +  +     LVD+Y++ G +  AL V   MP + N +   +++     HG
Sbjct: 329 RDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHG 383


>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
          Length = 485

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 273/449 (60%), Gaps = 4/449 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
            ++S    +VSW S I    R G   EA+R F DM+L  +EP+ +T I ++SAC      
Sbjct: 13  LNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSG 72

Query: 197 N--LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           +  LG  +H Y  + GL  + V +  A++ MY K G L  A  +FD + +K  V+  TMI
Sbjct: 73  SEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMI 132

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + G +D A  +FD +P++ ++ W A+I G+V+    +EALA F EMQ +G+ PD V
Sbjct: 133 DGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYV 192

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             +  ++AC+ LGAL  G+W+HR++  ++F  NV +  +L+D+Y +CG +  A QVF +M
Sbjct: 193 AIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKM 252

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ ++I G A +G A +++ YF +M   G  PD +TF G L+AC H GLV+EG 
Sbjct: 253 EKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGF 312

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M   +R+SP+++HY C+VDL  R+G LE+A  ++ SMPM  + VV G+L  ACR 
Sbjct: 313 QYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAACRN 372

Query: 494 HGNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           HGN +I  ER    + +LD +    YV+L+NMY     WE A K+R+ M+  G++K PG 
Sbjct: 373 HGNHTILAERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGY 432

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SSIE++   + F+  D +H E   I + L
Sbjct: 433 SSIEIDDCTHVFMAGDSAHVETAYIREVL 461



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 173/385 (44%), Gaps = 68/385 (17%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL--GLRFLGYEIF 102
           SW   I      G++ EAV  +  M R  G  P++ T+  L   C +   G   LGY + 
Sbjct: 23  SWTSRITLLSRDGRLAEAVREFSDM-RLAGIEPNHITFIALLSACGNFPSGSEGLGYLLH 81

Query: 103 GHVLKLGF--------------------------------DVDMYVHNAVIHVFVSCGDL 130
           G+  KLG                                 D +    N +I  ++  G +
Sbjct: 82  GYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQV 141

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A +VFD+   R+L+SW ++I GFV+ GF  EA+  FR+MQ+  V PD V +I  V+AC
Sbjct: 142 DNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAAC 201

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
             L  L+ G  +H Y+        V ++N+L+D+Y +CG +E A ++FD M  +TVVS  
Sbjct: 202 TNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWN 261

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++IVG+A  G                                + E+L  F +MQ  G  P
Sbjct: 262 SVIVGFAANG-------------------------------NANESLVYFRKMQREGFTP 290

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQV 369
           D VT    L+ACS +G +++G    + ++ +   +  +     LVD+Y++ G +  A  V
Sbjct: 291 DGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIV 350

Query: 370 FHEMPER-NSLTYTAIIGGLALHGK 393
              MP + N +   +++     HG 
Sbjct: 351 VESMPMKPNEVVIGSLLAACRNHGN 375



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 41/281 (14%)

Query: 5   GLISHGFA------PSRLIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFL 54
           G + HG+A       S ++   AI    S+S +L     +   +++ NS +WN  I G++
Sbjct: 77  GYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYM 136

Query: 55  ETGKMREAVDLYKQM------------------------------LRNGGTRPDNFTYPL 84
             G++  AVD++ +M                              ++  G  PD      
Sbjct: 137 RNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIS 196

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
               C +LG    G  +  +VL   F  ++ V N++I ++  CG +  A  VFD+   R 
Sbjct: 197 AVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRT 256

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +VSWNS+I GF  +G   E++  FR MQ E   PD VT  G ++AC+ +  +  G +   
Sbjct: 257 VVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQ 316

Query: 205 YIS-ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            +  +  ++  +     L+D+Y + G+LE A  + +SM  K
Sbjct: 317 MMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMK 357



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           +Q  ++      +++T+ I  L+  G+  +A+  FS+M   G+ P+ ITF+ +LSAC + 
Sbjct: 10  IQKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNF 69

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG---RSGLLEEAEQLIRSMPMAADVVV 483
               EG  Y     +  +L  +  H      +LG   +SG L +A +L+       + V 
Sbjct: 70  PSGSEGLGYLLHGYAC-KLGLERSHVMVGTAILGMYSKSGHLRKA-RLVFDYIEDKNSVT 127

Query: 484 WGALFFACRLHGNV 497
           W  +      +G V
Sbjct: 128 WNTMIDGYMRNGQV 141


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 293/532 (55%), Gaps = 46/532 (8%)

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G  R+A+  +  M R      D+FTY  L K  ++ G+  +   +  HV+KLG   D +V
Sbjct: 112 GAPRDALAAFSAMPRR-----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFV 165

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            NA+I  +   G    A  VFDE   R++VSWN+ +   VR G      +LF +M     
Sbjct: 166 GNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM----- 220

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P++ T                   + W              N ++D Y K G++E+A E
Sbjct: 221 -PEKDT-------------------VSW--------------NTILDGYTKAGEVEAAFE 246

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  + VVS +TM+ GY K G L++AR IFD +P K +V W  ++    Q     EA
Sbjct: 247 LFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEA 306

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
             LF +M+   ++ D    V  L+AC++ G+L  G  IHR++ K N   +  +  AL+DM
Sbjct: 307 GKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDM 366

Query: 357 YAKCGNIAKALQVFH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           + KCG + +A  VF  E  +++S+++ +IIGG A+HG    A+  F++M   G  PD +T
Sbjct: 367 FCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVT 426

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
            + +LSAC H G VDEGR++F+ M   + + P+++HY CM+DLLGR GL++EA  LI+SM
Sbjct: 427 MINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSM 486

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P   + V+WG+L  ACRLH NV   E A  +L +L P ++G Y +L+N+Y ++  W +  
Sbjct: 487 PWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMA 546

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           K R  M+  G +KT G S +E+N   +EF V D+ H + +QI + + +L+ H
Sbjct: 547 KARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSH 598



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 173/374 (46%), Gaps = 43/374 (11%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S++       K+   +   +  SWN A+   +  G++     L+ +M        D  
Sbjct: 172 AYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK-----DTV 226

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           ++  +       G     +E+F  +     + ++   + ++  +   GDL +A  +FD+ 
Sbjct: 227 SWNTILDGYTKAGEVEAAFELFQRMP----ERNVVSWSTMVSGYCKKGDLEMARVIFDKM 282

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +NLV+W  +++   + G   EA +LF  M+   VE D   ++ +++ACA+   L+LG+
Sbjct: 283 PSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGK 342

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVNKTVVSCTTMIVGYAKF 259
            IH Y+ +  L  +  + NAL+DM+ KCG +  A+ +FD+  V K  VS  ++I G+A  
Sbjct: 343 RIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 402

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G  D                               +AL LF +M+  G  PDAVT ++ L
Sbjct: 403 GHGD-------------------------------KALELFAQMKQQGFNPDAVTMINVL 431

Query: 320 SACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERN 377
           SAC+ +G +D+G      +E++      +     ++D+  + G I +A+ +   MP E N
Sbjct: 432 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPN 491

Query: 378 SLTYTAIIGGLALH 391
            + + +++    LH
Sbjct: 492 EVIWGSLLSACRLH 505


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 286/496 (57%), Gaps = 37/496 (7%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++  + + G+  +A  +FD S  +N+V +N +I  +V +    EA+ +F+ M      PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++ AC+ L++L +G ++H  I + GL   + + NAL+ MY KCG L  A ++ D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKI------------------------------- 268
            M  + VVS  +M+ GYA+ G  D A +I                               
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 269 ------FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                 F+ + +K ++ WN +I  YV      EA++LF +M+  G+KPDAVT    L AC
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             L AL  G  +H++IEK N   N++L  AL+DMYAKCG + +A  VF +M  R+ +++T
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWT 376

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           +++      G+  DA++ F++M+  G  PD I F+ +LSAC H GL+D+GR YF  M+  
Sbjct: 377 SMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQ 436

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + + P+++H++CMVDL GR+G +EEA   I+ MPM  +  VWGAL  ACR+H  + IG  
Sbjct: 437 YGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLV 496

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  L +L P+ SG YVLL+N+Y  + MW++   VR  M++ G++K PG S++E+NG ++
Sbjct: 497 AADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVH 556

Query: 563 EFIVRDKSHPELEQIY 578
            F+  D+ HP+ + IY
Sbjct: 557 TFLAGDQYHPQAKNIY 572



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 162/363 (44%), Gaps = 67/363 (18%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+L  +   +  SWN  + G+ ++G+  +A+++ K+M                       
Sbjct: 193 KVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM----------------------- 229

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                        L L  D       + +  + S  ++    N+F+    +NL+SWN +I
Sbjct: 230 -----------DSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMI 278

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             +V +  P EA+ LF  M+   ++PD VT+  ++ AC  L  L LGR +H YI +  L 
Sbjct: 279 AIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLR 338

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L NAL+DMY KCG LE A ++FD M  + VVS T+M+  Y + G            
Sbjct: 339 PNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG------------ 386

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                        GY       +A+ALF +M  +G  PD++  V  LSACS  G LD G 
Sbjct: 387 ------------QGY-------DAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGR 427

Query: 333 WIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
              R + E+      +     +VD++ + G + +A     +MP E N   + A++    +
Sbjct: 428 HYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRV 487

Query: 391 HGK 393
           H K
Sbjct: 488 HSK 490



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 2/217 (0%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           +N+ Y   +   +   N  SWNV I  ++      EAV L+ QM    G +PD  T   L
Sbjct: 254 ENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM-EECGMKPDAVTIASL 312

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              C  L   FLG  +  ++ K     ++ + NA++ ++  CG L  A +VFD+  +R++
Sbjct: 313 LPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDV 372

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           VSW S+++ + RSG   +A+ LF  M      PD +  + ++SAC+    L+ GR     
Sbjct: 373 VSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRM 432

Query: 206 ISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           ++E  G+   +     ++D++ + G++E A      M
Sbjct: 433 MTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQM 469



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 42/247 (17%)

Query: 244 KTVVSCTTMIVGYAKF-GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           K ++ CT  I+   KF G +   R  FD L  +                 SKEA  +  +
Sbjct: 2   KAIIFCTRQILNSNKFRGIVSSTRIRFDRLKVEVF---------------SKEACEVILD 46

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
            Q  GIK               L  L   I I+     E+  ++  L   L+  Y+  G 
Sbjct: 47  -QYPGIK--------------TLNKLHSKIVIN-----EHLRIDPTLAIKLMRAYSAQGE 86

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
            + A  +F    E+N + +  +I     +   ++A+S F  M+     PD  TF  +L A
Sbjct: 87  TSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKA 146

Query: 423 CCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           C   GL D  R       +I +  L   L   + +V + G+ G L EA +++  MP   D
Sbjct: 147 C--SGL-DNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPY-RD 202

Query: 481 VVVWGAL 487
           VV W ++
Sbjct: 203 VVSWNSM 209


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 286/496 (57%), Gaps = 37/496 (7%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++  + + G+  +A  +FD S  +N+V +N +I  +V +    EA+ +F+ M      PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++ AC+ L++L +G ++H  I + GL   + + NAL+ MY KCG L  A ++ D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKI------------------------------- 268
            M  + VVS  +M+ GYA+ G  D A +I                               
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 269 ------FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                 F+ + +K ++ WN +I  YV      EA++LF +M+  G+KPDAVT    L AC
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             L AL  G  +H++IEK N   N++L  AL+DMYAKCG + +A  VF +M  R+ +++T
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWT 376

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           +++      G+  DA++ F++M+  G  PD I F+ +LSAC H GL+D+GR YF  M+  
Sbjct: 377 SMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQ 436

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + + P+++H++CMVDL GR+G +EEA   I+ MPM  +  VWGAL  ACR+H  + IG  
Sbjct: 437 YGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLV 496

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA  L +L P+ SG YVLL+N+Y  + MW++   VR  M++ G++K PG S++E+NG ++
Sbjct: 497 AADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVH 556

Query: 563 EFIVRDKSHPELEQIY 578
            F+  D+ HP+ + IY
Sbjct: 557 TFLAGDQYHPQAKNIY 572



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 162/363 (44%), Gaps = 67/363 (18%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+L  +   +  SWN  + G+ ++G+  +A+++ K+M                       
Sbjct: 193 KVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM----------------------- 229

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                        L L  D       + +  + S  ++    N+F+    +NL+SWN +I
Sbjct: 230 -----------DSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMI 278

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             +V +  P EA+ LF  M+   ++PD VT+  ++ AC  L  L LGR +H YI +  L 
Sbjct: 279 AIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQ 338

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L NAL+DMY KCG LE A ++FD M  + VVS T+M+  Y + G            
Sbjct: 339 PNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG------------ 386

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                        GY       +A+ALF +M  +G  PD++  V  LSACS  G LD G 
Sbjct: 387 ------------QGY-------DAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGR 427

Query: 333 WIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
              R + E+      +     +VD++ + G + +A     +MP E N   + A++    +
Sbjct: 428 HYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRV 487

Query: 391 HGK 393
           H K
Sbjct: 488 HSK 490



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 2/217 (0%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           +N+ Y   +   +   N  SWNV I  ++      EAV L+ QM    G +PD  T   L
Sbjct: 254 ENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM-EECGMKPDAVTIASL 312

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              C  L   FLG  +  ++ K     ++ + NA++ ++  CG L  A +VFD+  +R++
Sbjct: 313 LPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDV 372

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           VSW S+++ + RSG   +A+ LF  M      PD +  + ++SAC+    L+ GR     
Sbjct: 373 VSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRM 432

Query: 206 ISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           ++E  G+   +     ++D++ + G++E A      M
Sbjct: 433 MTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQM 469



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 244 KTVVSCTTMIVGYAKF-GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           K ++ CT  I+   KF GF+ + R  FD L  +                 SKEA  +  +
Sbjct: 2   KAIIFCTRQILNSNKFRGFVSLTRIRFDRLKVEVF---------------SKEACEVILD 46

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
            Q  GIK               L  L   I I+     E+  ++  L   L+  Y+  G 
Sbjct: 47  -QYPGIK--------------TLNKLHSKIVIN-----EHLRIDPTLAIKLMRAYSAQGE 86

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
            + A  +F    E+N + +  +I     +   ++A+S F  M+     PD  TF  +L A
Sbjct: 87  TSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKA 146

Query: 423 CCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           C   GL D  R       +I +  L   L   + +V + G+ G L EA +++  MP   D
Sbjct: 147 C--SGL-DNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPY-RD 202

Query: 481 VVVWGAL 487
           VV W ++
Sbjct: 203 VVSWNSM 209


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 311/561 (55%), Gaps = 31/561 (5%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
             + LFN +   +  SWN  + GF + G + EA  ++ QML       +  ++  L    
Sbjct: 140 AARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV-----KNEISWNGLLSAY 194

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
              G       +F   +    D ++   N ++  +V    L  A ++FD   VR+ +SWN
Sbjct: 195 VQNGRIEDARRLFDSKM----DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS------ACAQLEDLNLGREIH 203
            +I G+ ++G   EA RLF ++ +  V      + G V       A    E++    E+ 
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           W              NA++  YV+  ++E A E+FD M ++   S  TM+ GYA+ G +D
Sbjct: 311 W--------------NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNID 356

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A+ +FD++P++  + W A+I GY Q+ +S+EAL LF +M+  G   +       LS+C+
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           ++ AL+ G  +H  + K  F    + G AL+ MY KCG+I +A  VF ++ E++ +++  
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A HG   +A++ F E + + + PD++T +G+LSAC H G VD+G +YF  M   +
Sbjct: 477 MIAGYARHGFGKEALALF-ESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNY 535

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++   KHY+CM+DLLGR+G L+EA  L++SMP   D   WGAL  A R+HG+  +GE+A
Sbjct: 536 GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA 595

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A K+ E++P +SG+YVLL+N+Y  S  W E  ++R  M ++GV+K PG S +E+    + 
Sbjct: 596 AEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHI 655

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F V D SHPE E+IY  L +L
Sbjct: 656 FTVGDCSHPEAERIYAYLEEL 676



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 225/472 (47%), Gaps = 33/472 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ESKN D        + + +   WN  I  ++  G+   A+ ++     NG  R    TY 
Sbjct: 47  ESKNSDS------TIVDSDIVKWNRKISAYMRKGQCESALSVF-----NGMRRRSTVTYN 95

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +     S  L    ++    V +   D D+   N ++  +V  G+L  A  +F++   +
Sbjct: 96  AMI----SGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK 151

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           ++VSWN++++GF ++GF  EA ++F  M ++    +E++  G++SA  Q   +   R + 
Sbjct: 152 DVVSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLF 207

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
               +S +   +   N LM  YV+  +L+ A  +FD M  +  +S   MI GYA+ G L 
Sbjct: 208 ----DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            AR++F++LP + V  W A++ G+VQ     EA  +F EM     + + V+    ++   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYV 319

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           Q   ++      R +  +  + N      +V  YA+CGNI +A  +F EMP+R+ +++ A
Sbjct: 320 QSQQIEKA----RELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G A  G++ +A+  F +M   G + +       LS+C     ++ G++   ++    
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
             +  +   + ++ + G+ G +EEA  +   +    D+V W  +      HG
Sbjct: 436 FQTGYIAG-NALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG 485


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 206/591 (34%), Positives = 320/591 (54%), Gaps = 46/591 (7%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAV 63
           GL  +    ++LI   AI +     Y ++++F+ +Q+ N F WN  I G+ +     EA 
Sbjct: 53  GLSQNSLLATKLIFAYAICQHP---YHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAF 109

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+ QM  +    PD+FT   L KV + LG  F G  I G  +++GF  D  V N+++ +
Sbjct: 110 QLFNQMC-SSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSM 168

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG---FPREAIRLFRDMQLERVEPDE 180
           +  CG+   +  VFDE  +RN  SWN LI G+  SG   F  E     + MQ++ V PD 
Sbjct: 169 YCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDA 228

Query: 181 VTMIGMVSAC-AQLEDLNLGREIHWYISES----GLTLTVPLANALMDMYVKCGKLESAE 235
            T+  ++  C       + GRE+H YI ++    GL   V L   L+DMY          
Sbjct: 229 YTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY---------- 278

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
               S  NK VV                  R++FD +  + V  W A+I GYV+   S E
Sbjct: 279 ----SRSNKVVV-----------------GRRVFDRMKCRNVFSWTAMINGYVENGDSDE 317

Query: 296 ALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           AL+LF +MQ   GI+P+ V+ V  L ACS    L  G  IH F  ++  N  V L  AL+
Sbjct: 318 ALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 377

Query: 355 DMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           DMY+KCG++  A +VF +    +++++++++I G  LHGK  +AI  + +M+  G+ PD 
Sbjct: 378 DMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDM 437

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           IT +GILSAC   GLV+EG   ++ + + + + P L+ ++C+VD+LGR+G L+ A   I+
Sbjct: 438 ITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIK 497

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           +MP+     VWGAL     +HG++ + E A   L++L+P++   YV ++N+Y  S  W+ 
Sbjct: 498 AMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDA 557

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             +VR+MM+++ + K PGCS I +N   + F V DK+HP    IY+ L  L
Sbjct: 558 VAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDL 608



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 127/301 (42%), Gaps = 39/301 (12%)

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           + L L R+ H  I   GL+    LA  L+  Y  C     +  +FDS+ +K V    ++I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GYAK        ++++                        EA  LF++M ++ + PD  
Sbjct: 97  NGYAK-------NRLYN------------------------EAFQLFNQMCSSDVLPDDF 125

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T        S+LGAL  G  IH    +  F  + V+  +++ MY KCGN  ++ +VF EM
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185

Query: 374 PERNSLTYTAIIGGLALHGKA---LDAISYFSEMIGVGLMPDEITFLGILSAC-CHGGLV 429
             RNS ++  +I G A+ G      +   +  +M    + PD  T   +L  C    G  
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKW 245

Query: 430 DEGRK---YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           D GR+   Y  +   +  L   +    C++D+  RS  +    ++   M    +V  W A
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMK-CRNVFSWTA 304

Query: 487 L 487
           +
Sbjct: 305 M 305


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 204/599 (34%), Positives = 318/599 (53%), Gaps = 46/599 (7%)

Query: 28   LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
            L+   K+  ++   N  +WN  I G+++ G  +EA+D++  M R  G  P   T      
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM-RVEGIEPTRVTVASFLS 1386

Query: 88   VCASLGLRFLGYEIFGHVLKL--GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              A+L     G +  GH + +    D+D  + +++I+ +   G +  A  VF     +++
Sbjct: 1387 ASANLDALIEGKQ--GHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDV 1444

Query: 146  VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
            V+WN LI+ +V+     +A+ +   M+ E +  D VT+  ++SA A   ++ LG+E H Y
Sbjct: 1445 VTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCY 1504

Query: 206  ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
                 L   V +AN+++DMY KC +++ A ++FDS   + +V   T++  YA+ G    A
Sbjct: 1505 CIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEA 1564

Query: 266  RKIF-----DDLPEKYVVPWNAIIGGYV---QAKRSK----------------------- 294
             K+F     D +P   V+ WN++I G++   Q   +K                       
Sbjct: 1565 LKLFYQMQFDSVPPN-VISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLIS 1623

Query: 295  ---------EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                     EA+  F +MQ  GI+P   +    L AC+ + +L  G  IH FI +  F L
Sbjct: 1624 GLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCL 1683

Query: 346  NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
            +V + T+LVDMYAKCG+I +A +VFH M  +    Y A+I   ALHG+A++A++ F  + 
Sbjct: 1684 SVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQ 1743

Query: 406  GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
              G+ PD ITF  ILSAC H GLV+EG   FA M S   ++P ++HY C+V LL R G L
Sbjct: 1744 KEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNL 1803

Query: 466  EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
            +EA +LI +MP   D  + G+L  ACR H  + +GE  +  L +L+P +SG YV L+N Y
Sbjct: 1804 DEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAY 1863

Query: 526  RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
              +  W E   +R +M+ RG+ K PGCS I+  G L  F+  D SHP+ E+IY  L  L
Sbjct: 1864 AAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAML 1922



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 233/469 (49%), Gaps = 35/469 (7%)

Query: 11   FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
            +  ++L+ F A  +   +    ++   ++  N FSW   +      G   +A+  + +M 
Sbjct: 1212 YVETKLVVFYAKCDFPEV--AVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQ 1269

Query: 71   RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
             NG   PDNF  P + K C SL L  LG  + G+VLK+GF   ++V ++++ ++  CG L
Sbjct: 1270 ENG-VFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVL 1328

Query: 131  GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
              A  VFD    +N+V+WNS+I G+V++G  +EAI +F DM++E +EP  VT+   +SA 
Sbjct: 1329 EDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSAS 1388

Query: 191  AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
            A L+ L  G++ H     + L L   L +++++ Y K G +E AE +F  M+ K VV+  
Sbjct: 1389 ANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVT-- 1446

Query: 251  TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                                         WN +I  YVQ  +  +AL + H M++  ++ 
Sbjct: 1447 -----------------------------WNLLISSYVQHHQVGKALNMCHLMRSENLRF 1477

Query: 311  DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
            D+VT    LSA +    +  G   H +  + N   +VV+  +++DMYAKC  I  A +VF
Sbjct: 1478 DSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVF 1537

Query: 371  HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
                ER+ + +  ++   A  G + +A+  F +M    + P+ I++  ++      G V+
Sbjct: 1538 DSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVN 1597

Query: 431  EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
            E +  F+QM S+    P L  ++ ++  L +SG   EA    + M  A 
Sbjct: 1598 EAKDMFSQMQSL-GFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAG 1645



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 209/445 (46%), Gaps = 40/445 (8%)

Query: 50   IRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL 108
            I    + G ++E+V L  +M   +    P+   Y  L + C        G +I   +LK 
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPE--IYGELLQGCVYERALHTGQQIHARILKN 1203

Query: 109  G--FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
            G  F  + YV   ++  +  C    +A  +F    VRN+ SW +++    R GF  +A+ 
Sbjct: 1204 GDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALL 1263

Query: 167  LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
             F +MQ   V PD   +  ++ AC  L+ + LG+ +H Y+ + G    V ++++L+DMY 
Sbjct: 1264 GFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYG 1323

Query: 227  KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
            KCG LE A ++FDSMV K VV+  +MIVG                               
Sbjct: 1324 KCGVLEDARKVFDSMVEKNVVTWNSMIVG------------------------------- 1352

Query: 287  YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            YVQ   ++EA+ +F++M+  GI+P  VT    LSA + L AL +G   H      + +L+
Sbjct: 1353 YVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLD 1412

Query: 347  VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
             +LG+++++ Y+K G I  A  VF  M E++ +T+  +I     H +   A++    M  
Sbjct: 1413 NILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRS 1472

Query: 407  VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLKHYSCMVDLLGRSGLL 465
              L  D +T   ILSA      +  G++       I R L   +   + ++D+  +   +
Sbjct: 1473 ENLRFDSVTLSSILSASAVTSNIKLGKE--GHCYCIRRNLESDVVVANSIIDMYAKCERI 1530

Query: 466  EEAEQLIRSMPMAADVVVWGALFFA 490
            ++A ++  S     D+V+W  L  A
Sbjct: 1531 DDARKVFDST-TERDLVLWNTLLAA 1554


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/586 (33%), Positives = 317/586 (54%), Gaps = 69/586 (11%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + G +   F  +RL+   A     +L  CT     +   + ++WN  I  ++  G   
Sbjct: 42  LVVAGKVQSIFISTRLVNLYANLGDVSLSRCT--FDQIPQKDVYAWNSMISAYVHNGHFH 99

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+  + Q+L     RPD +T+P + K C +L     G +I     KLGF  +++V  ++
Sbjct: 100 EAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNVFVAASL 156

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH++   G  G+A ++FD+   R++ SWN++I+G +++G   +A+ +  +M+LE ++ + 
Sbjct: 157 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNF 216

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT++ ++                                  +DMY K G L+SA ++F+ 
Sbjct: 217 VTVVSILP-------------------------------VFVDMYAKLGLLDSAHKVFEI 245

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           +  K V+S  T+I GYA+ G                                + EA+ ++
Sbjct: 246 IPVKDVISWNTLITGYAQNGL-------------------------------ASEAIEVY 274

Query: 301 HEM-QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
             M +   I P+  T V  L A + +GAL  G+ IH  + K N +L+V + T L+D+Y K
Sbjct: 275 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGK 334

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CG +  A+ +F+++P+ +S+T+ AII    +HG A   +  F EM+  G+ PD +TF+ +
Sbjct: 335 CGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSL 394

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           LSAC H G V+EG+  F  M   + + P LKHY CMVDLLGR+G LE A   I+ MP+  
Sbjct: 395 LSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQP 453

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           D  +WGAL  ACR+HGN+ +G+ A+ +L E+D ++ G YVLL+N+Y +   WE   KVR 
Sbjct: 454 DASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRS 513

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           +  ERG++KTPG S+IEVN  +  F   ++SHP+ ++IY+ L  LT
Sbjct: 514 LARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLT 559



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 43/307 (14%)

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           +   P A  L  + V  GK++S   IF S         T ++  YA  G + ++R  FD 
Sbjct: 29  STKTPFAKCLHALLVVAGKVQS---IFIS---------TRLVNLYANLGDVSLSRCTFDQ 76

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDD 330
           +P+K V  WN++I  YV      EA+  F+++   + I+PD  T    L AC   G L D
Sbjct: 77  IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 133

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH +  K  F  NV +  +L+ MY++ G    A  +F +MP R+  ++ A+I GL  
Sbjct: 134 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 193

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSA----CCHGGLVDEGRKYFAQMSSIFRLS 446
           +G A  A+    EM   G+  + +T + IL          GL+D   K       +F + 
Sbjct: 194 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHK-------VFEII 246

Query: 447 P--KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV----VW----------GALFFA 490
           P   +  ++ ++    ++GL  EA ++ + M    +++     W          GAL   
Sbjct: 247 PVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 306

Query: 491 CRLHGNV 497
            ++HG V
Sbjct: 307 MKIHGRV 313


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 197/590 (33%), Positives = 313/590 (53%), Gaps = 44/590 (7%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM--LRNGGTRPDNFTYPLLFKVCASLGL 94
           ++ +P  FS++  I  F  +      +  +  +  LR     PD F  P   K CASL  
Sbjct: 63  HLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLR---LIPDAFLLPSAIKSCASLRA 119

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR----------- 143
              G ++       GF  D  V +++ H+++ C  +  A  +FD    R           
Sbjct: 120 LDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAG 179

Query: 144 ------------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
                                   NLVSWN ++ GF  +GF  EA+ +FR M ++   PD
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPD 239

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T+  ++ A   LED+ +G ++H Y+ + GL     + +A++DMY KCG ++    +FD
Sbjct: 240 GSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFD 299

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY----VVPWNAIIGGYVQAKRSKE 295
            +    + S    + G ++ G +D A ++F+   ++     VV W +II    Q  +  E
Sbjct: 300 EVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLE 359

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL LF +MQA G++P+AVT    + AC  + AL  G  IH F  +     +V +G+AL+D
Sbjct: 360 ALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALID 419

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MYAKCG I  A + F +M   N +++ A++ G A+HGKA + +  F  M+  G  PD +T
Sbjct: 420 MYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVT 479

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F  +LSAC   GL +EG + +  MS    + PK++HY+C+V LL R G LEEA  +I+ M
Sbjct: 480 FTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM 539

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P   D  VWGAL  +CR+H N+S+GE AA KL  L+P + G Y+LL+N+Y    +W+E  
Sbjct: 540 PFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEEN 599

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           ++R++M+ +G+ K PG S IEV   ++  +  D+SHP+++ I + L +L 
Sbjct: 600 RIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLN 649



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +TGL  +G   + L  F    + K               N  +W   I    + GK  EA
Sbjct: 313 LTGLSRNGMVDTALEVFNKFKDQK------------MELNVVTWTSIIASCSQNGKDLEA 360

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           ++L++ M +  G  P+  T P L   C ++     G EI    L+ G   D+YV +A+I 
Sbjct: 361 LELFRDM-QAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALID 419

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG + LA   FD+    NLVSWN+++ G+   G  +E + +F  M     +PD VT
Sbjct: 420 MYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVT 479

Query: 183 MIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
              ++SACAQ      G   +  +SE  G+   +     L+ +  + GKLE A  I   M
Sbjct: 480 FTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM 539



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 317 HCLSAC--SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK---ALQVFH 371
           H LS C  S   +L      H  I + N   +  L T+L+  YA   +++    +L +  
Sbjct: 3   HALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSS 62

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            +P     +++++I   A        ++ FS +  + L+PD       + +C     +D 
Sbjct: 63  HLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDP 122

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           G++  A  ++   L+  +   S +  +  +   + +A +L   MP   DVVVW A+
Sbjct: 123 GQQLHAFAAASGFLTDSIV-ASSLTHMYLKCDRILDARKLFDRMP-DRDVVVWSAM 176


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 200/630 (31%), Positives = 327/630 (51%), Gaps = 72/630 (11%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
            C   E   LD   K    +   +  +W+  +  F++ G+  E +D++ QM+      PD
Sbjct: 142 LCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA-VEPD 200

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           + T   + + C+ LG   LG  + G+V++   + +  ++N++I ++   GDL  A  +F+
Sbjct: 201 SVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFE 260

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
               R    W  +I+ + +SG  +EA+ +F  MQ  ++EP++VTM+G++ ACA+L  +  
Sbjct: 261 NVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKE 320

Query: 199 GREIHWY--------------------------------ISESGLTLTVPLANALMDMYV 226
           GR +H +                                + E+    T+   N L+ ++ 
Sbjct: 321 GRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFT 380

Query: 227 KCGKLESAEEIFDSMVNKTVV-----------SCTT------------------------ 251
           + G+ E A  +F  M  + ++           +C T                        
Sbjct: 381 RNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFV 440

Query: 252 ---MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              +I  YAK GF+  A K+F+ + EK +V WN++I G+ Q   S EA+ LF +M    +
Sbjct: 441 QNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV 500

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           K D +T +  + ACS LG L+ G W+H  +       +  L TAL DMY+KCG +  A  
Sbjct: 501 KMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHG 560

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           VF  M ER+ ++++ +I G  +HG+    IS F++M+G G+ P++ITF+ ILSAC H G 
Sbjct: 561 VFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGA 620

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           V+EG+ YF  MS  F + PK  H++CMVDLL R+G L  A Q+I S+P  A+  +WGAL 
Sbjct: 621 VEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 679

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
             CR+H  + I +     LL++D  D+G Y LL+N+Y +   W++ GKVR MM+ +G+ K
Sbjct: 680 NGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRK 739

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            PG S+IE++  +Y F   D SH + + IY
Sbjct: 740 VPGYSTIEIDKKIYRFGPGDTSHSQTKDIY 769



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 162/579 (27%), Positives = 271/579 (46%), Gaps = 69/579 (11%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ITGL  H  A ++LI   + ++    +   ++      P+SF W V I+ ++  G   EA
Sbjct: 26  ITGLHRHPPASTKLIE--SYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEA 83

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           V LY +M+    T+  NF +P + K C+  G   +G ++ G V+K GF+ D  V  +++ 
Sbjct: 84  VSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLC 143

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++     L  AC  FD   +R++V+W+S++  FV++G   E + +F  M  E VEPD VT
Sbjct: 144 MYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVT 203

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           M+ +  AC++L  L LGR +H Y+    +     L N+L+ MY K G L SAE +     
Sbjct: 204 MLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL----- 258

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                                     F+++P +   PW  +I  Y Q+   +EAL +F +
Sbjct: 259 --------------------------FENVPCRMTAPWTPMISCYNQSGCFQEALNVFAK 292

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGTALVDMYAKCG 361
           MQ   ++P+ VT V  L AC++LG + +G  +H F+ +   +  +  LG AL+++YA  G
Sbjct: 293 MQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTG 352

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD--------- 412
           N+    +VF  + E+  L++  +I     +G+  +A+  F +M   GLMPD         
Sbjct: 353 NLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLS 412

Query: 413 ---EITFLGILSACCHGGLVDEGR-KYFAQ------------MSSIFRLSPKLKH----- 451
               I+F   L A  HG ++  G    F Q            + S  ++  K+K      
Sbjct: 413 ACGTISF-SQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVT 471

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPM---AADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++ M+    ++G   EA  L   M M     D + + ++  AC   G +  G+    KL+
Sbjct: 472 WNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI 531

Query: 509 ELD-PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
                +DS +   L +MY      + A  V   M ER +
Sbjct: 532 MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 570



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 35/353 (9%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           Y  LF+ CA+        ++  H+   G          +I  +   G    +  VFD   
Sbjct: 4   YMPLFRRCATSTTL---TQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFP 60

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGR 200
             +   W  LI  +V  GF  EA+ L+ +M  + + +        ++ AC+   DL++G 
Sbjct: 61  KPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGG 120

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H  + + G      +  +L+ MY +   L+ A + FD+M                   
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTM------------------- 161

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                       P + VV W++I+  +VQ  ++ E L +F +M +  ++PD+VT +    
Sbjct: 162 ------------PIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTE 209

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           ACS+LG+L  G  +H ++ +     N  L  +L+ MY K G++  A ++F  +P R +  
Sbjct: 210 ACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAP 269

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           +T +I      G   +A++ F++M    + P+++T +G+L AC   G V EGR
Sbjct: 270 WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGR 322



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 157/367 (42%), Gaps = 44/367 (11%)

Query: 222 MDMYVKCGKLESAEEI----FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           M ++ +C    +  ++    F + +++   + T +I  YA+ G  + ++++FD  P+   
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDS 64

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEM---QATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
             W  +I  YV     +EA++L+HEM     T I      +V  L ACS  G L  G  +
Sbjct: 65  FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSV--LKACSGFGDLSVGGKV 122

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H  + K  F  + V+ T+L+ MY +   +  A + F  MP R+ + +++I+     +G+A
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-------------------- 434
            + +  FS+MI   + PD +T L +  AC   G +  GR                     
Sbjct: 183 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSL 242

Query: 435 --YFAQMSSIFRLSPKLKHYSC--------MVDLLGRSGLLEEAEQLIRSM---PMAADV 481
              + ++  ++      ++  C        M+    +SG  +EA  +   M    M  + 
Sbjct: 243 IVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ 302

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
           V    +  AC   G V  G      ++   +DP+   +   L  +Y D+    +  KV +
Sbjct: 303 VTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFE 362

Query: 540 MMEERGV 546
            ++E+ +
Sbjct: 363 TIKEKTI 369


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 183/523 (34%), Positives = 293/523 (56%), Gaps = 45/523 (8%)

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           + ++  ++ QM +  G  P+ FTYP + K C +LG   LG +I   VLK GF  ++YV +
Sbjct: 419 LNKSFQIFTQM-QIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSS 477

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
            +I ++   G L  A  +F      ++VSW ++I G+ +     EA+ LF++MQ + ++ 
Sbjct: 478 VLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKS 537

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D +     +SACA ++ L+ GR+IH     SG +  + + NAL+ +Y +CGK+  A   F
Sbjct: 538 DNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAF 597

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           D +              YAK           D+      V WN+++ G+ Q+   +EAL 
Sbjct: 598 DQI--------------YAK-----------DN------VSWNSLVSGFAQSGYFEEALN 626

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           +F +M   G++ ++ T    +SA + +  +  G  IH  I K  ++    +  AL+ +YA
Sbjct: 627 IFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYA 686

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG I             + +++ ++I G + HG   +A+  F +M  + ++P+ +TF+G
Sbjct: 687 KCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVG 733

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC H GLVDEG  YF  MS    L PK +HY+C+VDLLGRSGLL  A++ +  MP+ 
Sbjct: 734 VLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQ 793

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
            D +VW  L  AC +H N+ IGE AA  LLEL+P+DS  YVL++NMY  S  W+   + R
Sbjct: 794 PDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTR 853

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +MM++RGV+K PG S +EV+  ++ F   D++HP  + IY+ L
Sbjct: 854 QMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYL 896



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 145/486 (29%), Positives = 236/486 (48%), Gaps = 73/486 (15%)

Query: 7   ISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I+ GF  S  I    I    ++  L    K+  N++  +S SW   I G  + G   EA+
Sbjct: 191 ITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAM 250

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+ Q++ +  T+ + F +               G ++ G VLK GF  + YV NA++ +
Sbjct: 251 LLFCQIVLSACTKVEFFEF---------------GKQLHGLVLKQGFSSETYVCNALVTL 295

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +   G+L  A  +F     R+ VS+NSLI+G  + G+   A+ LF+ M L+  +PD VT+
Sbjct: 296 YSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTV 355

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE------- 236
             ++SACA +  L  G++ H Y  ++G+T  + +  +L+D+YVKC  +++A E       
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQ 415

Query: 237 ---------IFDSMVNKTVV-----------SCTT------------------------- 251
                    IF  M  + +V           +CTT                         
Sbjct: 416 LDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYV 475

Query: 252 ---MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              +I  YAK G LD A KIF  L E  VV W A+I GY Q  +  EAL LF EMQ  GI
Sbjct: 476 SSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGI 535

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           K D +     +SAC+ + ALD G  IH       ++ ++ +G ALV +YA+CG + +A  
Sbjct: 536 KSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYA 595

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
            F ++  ++++++ +++ G A  G   +A++ F++M   GL  +  TF   +SA  +   
Sbjct: 596 AFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIAN 655

Query: 429 VDEGRK 434
           V  G++
Sbjct: 656 VRIGKQ 661



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 220/499 (44%), Gaps = 75/499 (15%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA--SLGLRFLGYEIFG 103
           WN     F+    M     L+++ML       D   + ++ + C+  ++  RF+  +I  
Sbjct: 131 WNRIFNTFIAERLMGRVPGLFRRMLTKN-VEFDERIFAVVLRGCSGNAVSFRFVE-QIHA 188

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
             +  GF+   ++ N +I ++   G L  A  VF+    R+ VSW ++I+G  ++G+  E
Sbjct: 189 KTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEE 248

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+ LF  +              ++SAC ++E    G+++H  + + G +    + NAL+ 
Sbjct: 249 AMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVT 294

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD------------ 271
           +Y + G L SAE+IF  M  +  VS  ++I G A+ G+++ A  +F              
Sbjct: 295 LYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVT 354

Query: 272 -------------LPEKYVVPWNAIIGG--------------YVQAKRSKEA-------- 296
                        LP        AI  G              YV+    K A        
Sbjct: 355 VASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYG 414

Query: 297 --------LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
                     +F +MQ  GI P+  T    L  C+ LGA D G  IH  + K  F  NV 
Sbjct: 415 QLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVY 474

Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           + + L+DMYAK G +  AL++F  + E + +++TA+I G   H K  +A++ F EM   G
Sbjct: 475 VSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG 534

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           +  D I F   +SAC     +D+GR+  AQ S +   S  L   + +V L  R G + EA
Sbjct: 535 IKSDNIGFASAISACAGIQALDQGRQIHAQ-SCLSGYSDDLSIGNALVSLYARCGKVREA 593

Query: 469 EQLIRSMPMAADVVVWGAL 487
                 +  A D V W +L
Sbjct: 594 YAAFDQI-YAKDNVSWNSL 611



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 124/502 (24%), Positives = 211/502 (42%), Gaps = 86/502 (17%)

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           Y  ++   G R ++ T+  L + C       L    F   LKL            I  ++
Sbjct: 68  YLHLMEQHGVRANSQTFLWLLEGC-------LNSRSFYDGLKL------------IDFYL 108

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
           + GDL  A NVFDE  +R+L  WN + N F+          LFR M  + VE DE     
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 186 MVSACA-QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
           ++  C+          +IH     SG   +  + N L+D+Y K G L SA+++F+++  +
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             VS                               W A+I G  Q    +EA+ LF ++ 
Sbjct: 229 DSVS-------------------------------WVAMISGLSQNGYEEEAMLLFCQI- 256

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
                         LSAC+++   + G  +H  + K+ F+    +  ALV +Y++ GN++
Sbjct: 257 -------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLS 303

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A Q+FH M +R+ ++Y ++I GLA  G    A++ F +M      PD +T   +LSAC 
Sbjct: 304 SAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACA 363

Query: 425 HGGLVDEGRKYFA------QMSSIFRLSPKLKHYSCMVDL---------LGRSGLLEEAE 469
             G +  G+++ +        S I      L  Y    D+          G+   L ++ 
Sbjct: 364 SVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSF 423

Query: 470 QLIRSMPMAADV---VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV--LLANM 524
           Q+   M +   V     + ++   C   G   +GE+   ++L+   Q   +YV  +L +M
Sbjct: 424 QIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQ-FNVYVSSVLIDM 482

Query: 525 YRDSNMWEEAGKVRKMMEERGV 546
           Y      + A K+ + ++E  V
Sbjct: 483 YAKHGKLDHALKIFRRLKENDV 504


>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like isoform 1 [Cucumis sativus]
          Length = 703

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 304/563 (53%), Gaps = 34/563 (6%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           + L+   ++   +      S+   I G  +     EA++++K M R+ G  P+  T   +
Sbjct: 141 RQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDM-RSAGVAPNEVTMASV 199

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              C+ +G  +    +   V+KL F   + +   ++H++     L     +F+E  VRN 
Sbjct: 200 MSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNT 259

Query: 146 VSWNSLINGFVRSGFPREAIRLF-----RDM-----------QLERVE------------ 177
           VSWN ++ G+V+SG   +A  LF     RD+           Q++R+             
Sbjct: 260 VSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKS 319

Query: 178 ---PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
              P+EV ++ ++SAC Q   +  GR+ H  I ++G      +   ++  Y  C +++ A
Sbjct: 320 DLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLA 379

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
              +       + S   MIVG+ K G +D AR+IFD +PEK V  W+ +I GY Q +   
Sbjct: 380 YLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPD 439

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
            AL LFH M  + ++P+ +T V   SA + LG L +G W H ++  +   LN  L  A++
Sbjct: 440 VALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAII 499

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           DMYAKCG+I  AL VF ++ ++ S    + AII GLA+HG A  ++  FS +    +  +
Sbjct: 500 DMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLN 559

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            ITFLG+LSACCH GLV+ G +YF  M +   + P +KHY C+VDLLGR G L EAE+++
Sbjct: 560 SITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIV 619

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           R+MPM ADVV+WG L  + R HG V IGERAA  L  L P      VLL+N+Y D+ +WE
Sbjct: 620 RTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWE 679

Query: 533 EAGKVRKMMEERGVEKTPGCSSI 555
           +A  VR+ ++ + + ++PG S +
Sbjct: 680 DAALVRRAIQSQRMIRSPGYSGV 702



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 229/493 (46%), Gaps = 73/493 (14%)

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K CAS      G +I   VLK GF+ + ++ N++I+++V CG L  A  +FD   V + 
Sbjct: 68  LKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDS 127

Query: 146 VSWNSLINGFVR-----------SGFPR--------------------EAIRLFRDMQLE 174
           VS N +++G+V+           +  P                     EAI +F+DM+  
Sbjct: 128 VSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSA 187

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            V P+EVTM  ++SAC+ +  +   R +H  + +      V ++  L+ MY     L+  
Sbjct: 188 GVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDT 247

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
           + +F+ M  +  VS   M+ GY K G +D AR++F+ +PE+ V  W  +I G+VQ KR +
Sbjct: 248 KRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLR 307

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           +AL L+  M+ + + P+ V  V  LSAC Q  ++++G   H  I K  F     +   ++
Sbjct: 308 KALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATII 367

Query: 355 DMYAKC-------------------------------GNIAKALQVFHEMPERNSLTYTA 383
             YA C                               G I +A Q+F  MPE++  +++ 
Sbjct: 368 SFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWST 427

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSI 442
           +I G A +     A+  F  MI   + P+EIT + + SA    G + EGR     + + +
Sbjct: 428 MISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKV 487

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIG- 500
             L+  L   + ++D+  + G ++ A  + R +    + V  W A+     +HG+ ++  
Sbjct: 488 IPLNDNLS--AAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSL 545

Query: 501 ------ERAAMKL 507
                 +R ++KL
Sbjct: 546 EIFSNLQRRSIKL 558



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 184/404 (45%), Gaps = 63/404 (15%)

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHW 204
           + W S  +    S  P + +  F + +      D E++++  +  CA    ++ G++IH 
Sbjct: 26  LKWVSTFSTIESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAISSGQQIHA 85

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            + + G      + N+L++MYVKCG L SA  +FDS      VSC  M+ GY K   L+ 
Sbjct: 86  IVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLEN 145

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR++F  +PE+  V +  +I G  Q     EA+ +F +M++ G+ P+ VT    +SACS 
Sbjct: 146 ARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSH 205

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDM---------------------------- 356
           +G + +   +H  + K +F   V++ T L+ M                            
Sbjct: 206 IGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVM 265

Query: 357 ---YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
              Y K G + +A ++F  +PER+  ++  +I G     +   A+  +S M    L P+E
Sbjct: 266 LKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNE 325

Query: 414 ITFLGILSACCHGGLVDEGRKY-------------FAQMSSI---------------FRL 445
           +  + +LSAC     ++EGR++             F Q + I               +++
Sbjct: 326 VLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQM 385

Query: 446 SPKLKHYSCMVDLLG--RSGLLEEAEQLIRSMPMAADVVVWGAL 487
           S K    S  V ++G  ++G++++A Q+   MP   DV  W  +
Sbjct: 386 SDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMP-EKDVFSWSTM 428



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 79/376 (21%)

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA-VTTVHCLSACSQLGALD 329
             P    + W +       + R  + L+ F   + +    D  ++ V  L  C+   A+ 
Sbjct: 19  SFPPPLYLKWVSTFSTIESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAIS 78

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCG---------------------------- 361
            G  IH  + K  FN N  +  +L++MY KCG                            
Sbjct: 79  SGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYV 138

Query: 362 ---NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
               +  A Q+F +MPER  ++YT +I GLA +    +AI  F +M   G+ P+E+T   
Sbjct: 139 KLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMAS 198

Query: 419 ILSACCHGGLVDEGRKYFA-----QMSSIFRLSPKLKHYSCMVDLLG------------- 460
           ++SAC H G +   R   A         +  +S  L H  C+   L              
Sbjct: 199 VMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRN 258

Query: 461 ------------RSGLLEEAEQLIRSMPMAADVVVWGALF--FACRLHGNVSIGERAAMK 506
                       +SGL+++A +L   +P   DV  W  +   F        ++   +AM+
Sbjct: 259 TVSWNVMLKGYVKSGLVDQARELFERIP-ERDVFSWAIMIDGFVQMKRLRKALLLYSAMR 317

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG------VEKT-----PGCSSI 555
             +L P +  I  LL+   +  ++ EE  +   ++ + G      ++ T       C  I
Sbjct: 318 KSDLHPNEVLIVDLLSACGQSVSI-EEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRI 376

Query: 556 EVNGLLYEFIVRDKSH 571
           ++  L Y+  + DKSH
Sbjct: 377 DLAYLQYQ--MSDKSH 390


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 185/444 (41%), Positives = 269/444 (60%), Gaps = 4/444 (0%)

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED---LNLGREI 202
           VSW S I+   ++    +A   F  M    VEP+ +T+I ++SACA       +  G  +
Sbjct: 53  VSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAAL 112

Query: 203 HWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           H +  + G  +  V +  AL+DMY KCGKL+ A  +FD M  + +VS  TMI GY K G 
Sbjct: 113 HTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGD 172

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +D A K+FD LP K VV W  +IGG+V+ +  +EAL  F EMQ  G+ PD VT +  +SA
Sbjct: 173 VDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISA 232

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ LGAL  G+W+HR + K+ F  NV +  +L+DMYA+CG I  A QVF  M +RN +++
Sbjct: 233 CANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSW 292

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            +II G A++G A  A+S+F  M   GL P+ +++   L+AC H GL+DEG K FA +  
Sbjct: 293 NSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKR 352

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
             R SP+++HY C+VDL  R+G L+EA  +I+ MPM  + VV G+L  ACR  G+V + E
Sbjct: 353 DHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAE 412

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
           +     +EL P     YVL +N+Y     W+ A KVR+ M+ERG++K    SSIE++  +
Sbjct: 413 KVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGI 472

Query: 562 YEFIVRDKSHPELEQIYDCLVQLT 585
           ++F+  DK H E + IY  L  L+
Sbjct: 473 HKFVSGDKYHEENDYIYSALELLS 496



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 175/375 (46%), Gaps = 71/375 (18%)

Query: 39  QNPNS---FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR 95
             PNS    SW  +I    +     +A   + QML      P++ T   L   CA    +
Sbjct: 45  HKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLE-AEVEPNHITLITLLSACAHSPSK 103

Query: 96  F---LGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
                G  +  H  K GF + D+ V  A+I ++  CG L  A  VFD+  VRNLVSWN++
Sbjct: 104 TSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTM 163

Query: 152 INGFVRSG-----------FP--------------------REAIRLFRDMQLERVEPDE 180
           I+G++++G            P                     EA+  FR+MQL  V PD 
Sbjct: 164 IDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDF 223

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VT+I ++SACA L  L LG  +H  + +      V + N+L+DMY +CG +E A ++FD 
Sbjct: 224 VTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDG 283

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + +VS  ++IVG+A  G  D                               +AL+ F
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLAD-------------------------------KALSFF 312

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA-LVDMYAK 359
             M+  G++P+ V+    L+ACS  G +D+G+ I   I++++ N   +     LVD+Y++
Sbjct: 313 RSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSR 372

Query: 360 CGNIAKALQVFHEMP 374
            G + +A  V  +MP
Sbjct: 373 AGRLKEAWDVIKKMP 387



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 2/216 (0%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D   K+   +   N  SW V I GF++     EA++ +++M +  G  PD  T   + 
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREM-QLAGVVPDFVTVIAII 230

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA+LG   LG  +   V+K  F  ++ V N++I ++  CG + LA  VFD    RNLV
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWNS+I GF  +G   +A+  FR M+ E +EP+ V+    ++AC+    ++ G +I   I
Sbjct: 291 SWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADI 350

Query: 207 SESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                 +  +     L+D+Y + G+L+ A ++   M
Sbjct: 351 KRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKM 386


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 290/523 (55%), Gaps = 17/523 (3%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL- 132
           G  P+ FT+  L + CA LGL      + G +++ GF  D++V NA++ V+  CG  G  
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165

Query: 133 ----ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
               A  VFDE   R++VSWNS++  ++ SG    A+  F  M     E + V+   +V+
Sbjct: 166 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP----ERNVVSWNTVVA 221

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
             A++ D+   R +     +   +      N ++  Y   G +E+A  +FD M  K VVS
Sbjct: 222 GFARMGDMVTARAVF----DRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVS 277

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG- 307
            T M+  YAK G LD   ++FD +P K +V WNA+I GY    R  EAL  F  M   G 
Sbjct: 278 WTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGR 337

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +PD  T V  +SAC+QLG+++   WI  FI K N +L V LG AL+DM+AKCG++ +A 
Sbjct: 338 FRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAE 397

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            +F++M  R  +T+T +I G A +G   DA+  ++ M   G+  D+  F+  L+AC HGG
Sbjct: 398 SIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGG 457

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           L+ EG   F +M   + + P+++HY CMVDLLGR+G L+EA   I SMP+   VV+W  L
Sbjct: 458 LLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTL 517

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             +C  HGN  + E  + K+ EL+P +S   VL++N       W+     R  M   G+E
Sbjct: 518 LCSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIE 577

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIY---DCLVQLTRH 587
           K PG SSI+V   ++EF+ +D  H   ++IY   D L+ L RH
Sbjct: 578 KVPGSSSIQVGSEVHEFLAKDTRHKRRKEIYETVDGLMALMRH 620



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 180/392 (45%), Gaps = 59/392 (15%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           N  SWN  + GF   G M  A  ++ +M  RN                  S  L   GY 
Sbjct: 212 NVVSWNTVVAGFARMGDMVTARAVFDRMPSRNA----------------VSWNLMISGYA 255

Query: 101 IFGHV--LKLGFD----VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
           + G V   +  FD     D+    A++  +   GDL     +FD   V+NLVSWN++I G
Sbjct: 256 MSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITG 315

Query: 155 FVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           +  +    EA+R F+ M LE R  PDE T++ +VSACAQL  +     I  +I +S + L
Sbjct: 316 YNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHL 375

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
           TV L NAL+DM+ KCG +  AE IF  M  + +++ TTMI G+A  G             
Sbjct: 376 TVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGL------------ 423

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                               ++AL +++ M   G++ D    +  L+AC+  G L +G  
Sbjct: 424 -------------------CRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWS 464

Query: 334 I-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           I +  +E+ N    +     +VD+  + GN+ +A+     MP E + + +  ++     H
Sbjct: 465 IFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAH 524

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           G A + I Y S+ I   L P   ++  ++S C
Sbjct: 525 GNA-ELIEYVSKKI-TELEPFNSSYQVLVSNC 554



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 126/264 (47%), Gaps = 4/264 (1%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A ++  +LD   ++  ++   N  SWN  I G+    +  EA+  ++ M+  G  RPD  
Sbjct: 284 AYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 343

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T   +   CA LG       I   + K    + + + NA+I +F  CGD+G A ++F + 
Sbjct: 344 TLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKM 403

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R +++W ++I+GF  +G  R+A+ ++ +M  E V+ D+   I  ++ACA    L  G 
Sbjct: 404 ETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGW 463

Query: 201 EI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAK 258
            I +  +    +   +     ++D+  + G L+ A    +SM +  +VV   T++     
Sbjct: 464 SIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVA 523

Query: 259 FGFLDIARKIFDDLPEKYVVPWNA 282
            G  ++   +   + E  + P+N+
Sbjct: 524 HGNAELIEYVSKKITE--LEPFNS 545



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 19/192 (9%)

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC----- 360
            G+ P+  T    L AC+ LG       +H  I +  F  +V +  AL+D+Y +C     
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGG 164

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE--ITFLG 418
           G +  A QVF EM +R+ +++ +I+G     G A  A+ +F        MP+   +++  
Sbjct: 165 GGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEA------MPERNVVSWNT 218

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +++     G +   R  F +M S   +S     ++ M+     SG +E A  +   M   
Sbjct: 219 VVAGFARMGDMVTARAVFDRMPSRNAVS-----WNLMISGYAMSGDVEAARSVFDRMDQ- 272

Query: 479 ADVVVWGALFFA 490
            DVV W A+  A
Sbjct: 273 KDVVSWTAMVSA 284


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 184/528 (34%), Positives = 300/528 (56%), Gaps = 33/528 (6%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           R  V ++   L N     D+    L+F + +   + +    I   V+K     D ++ + 
Sbjct: 121 RTKVAVFLGKLHNSSLLADSIVQSLVFAISSCTSVSYCS-AIHARVIKSLNYSDGFIGDR 179

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEP 178
           ++ ++   G    A  +FDE   R+LVSWNSL++G    G+    +  F  M+ E   +P
Sbjct: 180 LVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 239

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +EVT++ +VSACA +  L+ G+ +H  + + G++    + N+L++MY             
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMY------------- 286

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
                              K GFLD A ++F+++P + +V WN+++  +     +++ + 
Sbjct: 287 ------------------GKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 328

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           LF+ M+  GI PD  T V  L AC+  G       IH +I +  FN ++++ TAL+++YA
Sbjct: 329 LFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYA 388

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           K G +  +  +F E+ +R+++ +TA++ G A+H    +AI  F  M+  G+  D +TF  
Sbjct: 389 KLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTH 448

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +LSAC H GLV+EG+KYF  MS ++R+ P+L HYSCMVDLLGRSG LE+A +LI+SMPM 
Sbjct: 449 LLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME 508

Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
               VWGAL  ACR++GNV +G+  A +LL LDP D   Y++L+N+Y  + +W  A KVR
Sbjct: 509 PSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVR 568

Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
            +M+ER + + PGCS IE    ++ F+V D+ HP  ++I+  L +L R
Sbjct: 569 XLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIR 616



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 177/368 (48%), Gaps = 45/368 (12%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   + N +  SWN  + G    G +   ++ + +M    G +P+  T   +   CA +
Sbjct: 195 RLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXM 254

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G    G  + G V+KLG      V N++I+++   G L  A  +F+E  VR+LVSWNS++
Sbjct: 255 GALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 314

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE---IHWYISES 209
                +G+  + + LF  M+   + PD+ TM+ ++ AC    D  LGR+   IH YI   
Sbjct: 315 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT---DTGLGRQAESIHAYIHRC 371

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G    + +A AL+++Y K G+L ++E+IF+ + ++  ++ T M+ GYA            
Sbjct: 372 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHAC-------- 423

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                   +EA+ LF  M   G++ D VT  H LSACS  G ++
Sbjct: 424 -----------------------GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460

Query: 330 DGIWIHRFIE--KENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAI 384
           +G    ++ E   E + +   L   + +VD+  + G +  A ++   MP E +S  + A+
Sbjct: 461 EG---KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 517

Query: 385 IGGLALHG 392
           +G   ++G
Sbjct: 518 LGACRVYG 525


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 295/544 (54%), Gaps = 41/544 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++F WN  +R        R    LY   +R     PD +T+P + K C       +G  +
Sbjct: 81  HAFPWNTLVRLHAAASPRRSL--LYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G  ++ G D D++  NA+I  +   GD      VFD   VR+LVSWNS++ G+V  G  
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAGYVGCGEV 197

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             A  LF +M+    + D  +   M+    ++                            
Sbjct: 198 DLAQDLFDEMR----QRDAFSWATMIDGYGEM---------------------------- 225

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
                  G ++ A E+FD M ++ +V   +MI GYA+ G +D AR +F+++PE+ V+ W+
Sbjct: 226 ------AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWS 279

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            +I GYV+     EAL  F  M + GIKPD V  V  ++AC+QLGAL+ G W+H ++EK+
Sbjct: 280 IVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKK 339

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               +VV+ TAL+DMY KCG +  A  +F  MP+++ +T+  +I GL  HG  LDAI  F
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLF 399

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           ++M       D+++ L +L++C H GLV EG   F +M     L PK++HY  ++DLLGR
Sbjct: 400 NQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGR 459

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G +++A   I +MPM     +WG+L  +CR H  V + E +  +L  L   DSG+YVLL
Sbjct: 460 AGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLL 519

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +N+Y D  MW++  ++RK+M   G++K  G S IEV+G ++EF+    SHP  E+IY  L
Sbjct: 520 SNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579

Query: 582 VQLT 585
             L+
Sbjct: 580 WNLS 583


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 293/532 (55%), Gaps = 46/532 (8%)

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G  R+A+  +  M R      D+FTY  L K  ++ G+  +   +  HV+KLG   D +V
Sbjct: 419 GAPRDALAAFSAMPRR-----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFV 472

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            NA+I  +   G    A  VFDE   R++VSWN+ +   VR G      +LF +M     
Sbjct: 473 GNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM----- 527

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P++ T                   + W              N ++D Y K G++E+A E
Sbjct: 528 -PEKDT-------------------VSW--------------NTILDGYTKAGEVEAAFE 553

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  + VVS +TM+ GY K G L++AR IFD +P K +V W  ++    Q     EA
Sbjct: 554 LFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEA 613

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
             LF +M+   ++ D    V  L+AC++ G+L  G  IHR++ K N   +  +  AL+DM
Sbjct: 614 GKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDM 673

Query: 357 YAKCGNIAKALQVFH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           + KCG + +A  VF  E  +++S+++ +IIGG A+HG    A+  F++M   G  PD +T
Sbjct: 674 FCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVT 733

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
            + +LSAC H G VDEGR++F+ M   + + P+++HY CM+DLLGR GL++EA  LI+SM
Sbjct: 734 MINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSM 793

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P   + V+WG+L  ACRLH NV   E A  +L +L P ++G Y +L+N+Y ++  W +  
Sbjct: 794 PWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMA 853

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           K R  M+  G +KT G S +E+N   +EF V D+ H + +QI + + +L+ H
Sbjct: 854 KARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSH 905



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 173/374 (46%), Gaps = 43/374 (11%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S++       K+   +   +  SWN A+   +  G++     L+ +M        D  
Sbjct: 479 AYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK-----DTV 533

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           ++  +       G     +E+F  +     + ++   + ++  +   GDL +A  +FD+ 
Sbjct: 534 SWNTILDGYTKAGEVEAAFELFQRMP----ERNVVSWSTMVSGYCKKGDLEMARVIFDKM 589

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +NLV+W  +++   + G   EA +LF  M+   VE D   ++ +++ACA+   L+LG+
Sbjct: 590 PSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGK 649

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVNKTVVSCTTMIVGYAKF 259
            IH Y+ +  L  +  + NAL+DM+ KCG +  A+ +FD+  V K  VS  ++I G+A  
Sbjct: 650 RIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 709

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G  D                               +AL LF +M+  G  PDAVT ++ L
Sbjct: 710 GHGD-------------------------------KALELFAQMKQQGFNPDAVTMINVL 738

Query: 320 SACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERN 377
           SAC+ +G +D+G      +E++      +     ++D+  + G I +A+ +   MP E N
Sbjct: 739 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPN 798

Query: 378 SLTYTAIIGGLALH 391
            + + +++    LH
Sbjct: 799 EVIWGSLLSACRLH 812


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 198/572 (34%), Positives = 312/572 (54%), Gaps = 37/572 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +   I GF+       A+ ++++M+ + G RP+  T+  + K C   G   L   I G  
Sbjct: 217 FTATISGFVRNELHHNALGVFRKMV-SCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSA 275

Query: 106 LKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG----- 159
           +K  F +  + V N++I +++  GD   A  VFDE  V+++VSW +L++ +  SG     
Sbjct: 276 IKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGA 335

Query: 160 ------FPR--------------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
                  P                     EA++L+  M  +   P+      ++SACA L
Sbjct: 336 RRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATL 395

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           EDL  G  IH    + G +  V ++++L+DMY KC K   A+ IFD++  K +V   ++ 
Sbjct: 396 EDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLA 455

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY+  G +  A  +F  +P + +  WN II GY Q ++  +AL  F+ M A+G  P  +
Sbjct: 456 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEI 515

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L AC+ L +L  G   H    K     ++ +GTAL DMYAK G++  + ++F++M
Sbjct: 516 TFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQM 575

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           PERN +T+TA+I GLA +G A ++I  F +M+  G+ P+E TFL +L AC HGGLV++  
Sbjct: 576 PERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAI 635

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            YF +M + + +SPK KHY+CMVD+L R+G L EAE L+   P  ++   W AL  AC  
Sbjct: 636 HYFEKMQA-WGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNT 694

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           + N  IGERAA +L EL   ++  YVLL+NMY     W++A ++R +M+   ++K  GCS
Sbjct: 695 YKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCS 754

Query: 554 SIEVNGLLYEFIVRDKSHP---ELEQIYDCLV 582
            ++V G  + F   +  HP   E+ +I D L+
Sbjct: 755 WVQVRGQYHAFFSWEAKHPLSMEINEILDLLL 786



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 218/489 (44%), Gaps = 67/489 (13%)

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A+ L+   +R+G    D      L    A+          FG  +  G     + ++ ++
Sbjct: 102 ALSLHAHAVRSG-VAADTSVASHLLTTYAAFARAAECDRAFGDCVAAG-AASPFTYDFMV 159

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSL------------------------------ 151
           H  V  GD+  A  +FD    R++VS+ ++                              
Sbjct: 160 HEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTA 219

Query: 152 -INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISES 209
            I+GFVR+     A+ +FR M    V P+ +T + M+ AC    +  L   I    I  +
Sbjct: 220 TISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSN 279

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
               ++ + N+L+ +Y++ G   +A ++FD M  K VVS T ++  Y++ G LD AR++ 
Sbjct: 280 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL 339

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D +PE+  V W  +I  + Q   + EA+ L+ +M A G +P+       LSAC+ L  L 
Sbjct: 340 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLR 399

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKC----------------------------- 360
            G  IH    K   + NV + ++L+DMY KC                             
Sbjct: 400 GGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYS 459

Query: 361 --GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
             G + +A+ +F +MP RN  ++  II G A + + +DA+  F+ M+  G +P EITF  
Sbjct: 460 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 519

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC +   +  G+   A+   +  +   +   + + D+  +SG L+ ++++   MP  
Sbjct: 520 VLLACANLCSLVTGKMAHAKTIKL-GMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER 578

Query: 479 ADVVVWGAL 487
            D V W A+
Sbjct: 579 ND-VTWTAM 586



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 166/386 (43%), Gaps = 63/386 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           SES +LD   ++L  +   N  SW   I    + G   EAV LY QML +G  RP+   +
Sbjct: 327 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADG-CRPNISCF 385

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA+L     G  I    LK+G   +++V +++I ++  C     A  +FD    
Sbjct: 386 SSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPE 445

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE------------------------- 177
           +N+V WNSL +G+  +G   EA+ LF+ M    +                          
Sbjct: 446 KNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAM 505

Query: 178 ------PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P E+T   ++ ACA L  L  G+  H    + G+  ++ +  AL DMY K G L
Sbjct: 506 LASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDL 565

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           +S++ +F  M  +  V+ T MI G A+ G                               
Sbjct: 566 QSSKRMFYQMPERNDVTWTAMIQGLAENGL------------------------------ 595

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
            ++E++ LF +M ATG+ P+  T +  L ACS  G ++  I     ++    +      T
Sbjct: 596 -AEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYT 654

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERN 377
            +VD+ A+ G + +A  +  + P ++
Sbjct: 655 CMVDVLARAGRLIEAEALLMKTPSKS 680



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 9/276 (3%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SWN  I G+ +  +  +A+  +  ML +G   P   T+  +   CA+L     G   
Sbjct: 478 NLASWNTIISGYAQNRQFVDALRSFNAMLASGQV-PGEITFSSVLLACANLCSLVTGKMA 536

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               +KLG +  +++  A+  ++   GDL  +  +F +   RN V+W ++I G   +G  
Sbjct: 537 HAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLA 596

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY--ISESGLTLTVPLAN 219
            E+I LF DM    + P+E T + ++ AC+    +   + IH++  +   G++       
Sbjct: 597 EESILLFEDMMATGMTPNEHTFLALLFACSHGGLVE--QAIHYFEKMQAWGISPKEKHYT 654

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARKIFDDLPEK 275
            ++D+  + G+L  AE +     +K+  +    ++     Y      + A K   +L + 
Sbjct: 655 CMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKD 714

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
               +  +   Y    R K+A  +   M+ T +K D
Sbjct: 715 NTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKD 750



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 36/169 (21%)

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY------------ 400
           +V  + K G+IA A  +F  MPER+ ++YT ++  L   G+  +A+              
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 217

Query: 401 -------------------FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF--AQM 439
                              F +M+  G+ P+ ITF+ ++ AC   G           A  
Sbjct: 218 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 277

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           S+ F  S ++++   ++ L  R G    A ++   M +  DVV W AL 
Sbjct: 278 SNFFESSIEVQN--SLITLYLRMGDAAAARKVFDEMDV-KDVVSWTALL 323


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g18840-like [Cucumis
            sativus]
          Length = 1096

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/650 (31%), Positives = 338/650 (52%), Gaps = 73/650 (11%)

Query: 7    ISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
            I  GF P+     +LI F A  +   L+   K+   +   N FSWN  I  ++++  +R+
Sbjct: 438  IKSGFTPTIFMSNQLITFYA--KHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSHNLRQ 495

Query: 62   AVDL-----------YKQML----RNGG------------------TRPDNFTYPLLFKV 88
            A  L           Y  ML    R+ G                   R D FT   +  +
Sbjct: 496  ARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNL 555

Query: 89   CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD---------- 138
             A L +   G ++   +LK   D+ ++  +++I ++  CG    AC V+           
Sbjct: 556  TAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVS 615

Query: 139  -----ESCVR------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
                  +C R                  ++V+WN++I+GFV++G+  E+++LF  M  E+
Sbjct: 616  RNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEK 675

Query: 176  VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
            V  +E T   ++SAC+ L  L LG+E+H Y+ ++ L     + + L+D+Y KC  +  A+
Sbjct: 676  VGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAK 735

Query: 236  EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
             +   +  + V S T+MIVGY+  G +  ARK+FD L EK    W A+  GYV+ ++ + 
Sbjct: 736  SVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEA 795

Query: 296  ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
               L  E +     PD +  +  + AC+   AL  G  IH ++ +    L+  L ++LVD
Sbjct: 796  VFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVD 855

Query: 356  MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
            MY+KCG+I  A ++F E+ +++S+ Y  +I G A HG   +A+  F EM+  G  PD IT
Sbjct: 856  MYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAIT 915

Query: 416  FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
            F+ +LSAC HGGLV+ G  +F  MS+ + + P++ HY+CM+DL GR+  L++A + +R +
Sbjct: 916  FVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKI 975

Query: 476  PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
            P+  D V+WGA   ACR++GN  +  +A  +LL ++ ++   YV LAN+Y     WEE G
Sbjct: 976  PIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMG 1035

Query: 536  KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            ++RK M+ + V+K  GCS + V    + FI  D+ H + E IY  L  LT
Sbjct: 1036 RIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASLT 1085



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 157/367 (42%), Gaps = 73/367 (19%)

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
           +++ L  G   H    +SG T T+ ++N L+  Y K G L  A+++FD M  + V S   
Sbjct: 423 EMKHLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNA 482

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK-EALALFHEMQATG--I 308
           +I  Y K   L  AR +FD    K +V +N+++ GY ++   + +AL  F EMQ     I
Sbjct: 483 IIAAYVKSHNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMI 542

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           + D  T +  L+  ++L  +  G  +H F+ K   +L V   ++L+DMY+KCG   +A +
Sbjct: 543 RIDEFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACR 602

Query: 369 VFH---------------------------------EMPERNSLTYTAIIGGLALHGKAL 395
           V++                                 E+ + + + +  +I G   +G   
Sbjct: 603 VYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEE 662

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCH--------------------------GGLV 429
           +++  F  M    +  +E TF  +LSAC +                           GLV
Sbjct: 663 ESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLV 722

Query: 430 D-----EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS--GLLEEAEQLIRSMPMAADVV 482
           D        +Y   ++S  R+      YS    ++G S  G + EA +L  S+    +  
Sbjct: 723 DVYCKCNNMRYAKSVNSELRMQ---NVYSITSMIVGYSSQGNMAEARKLFDSLD-EKNSA 778

Query: 483 VWGALFF 489
           VW ALFF
Sbjct: 779 VWTALFF 785


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 212/614 (34%), Positives = 316/614 (51%), Gaps = 61/614 (9%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDY--CTKILFNVQNPNSFSWNVAIRGFLETG---- 57
           +GL++  FA SRLI F   +    L +    ++L  V  PN+FS N+ ++   E G    
Sbjct: 30  SGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMVLKAAREHGLPHL 89

Query: 58  ------KMREAVDLYKQML----------------------RNGGTRPDNFTYPLL--FK 87
                  M  A D Y   +                      R+G  R       L+  + 
Sbjct: 90  CLPLYASMSAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYS 149

Query: 88  VCASLG-----------LRFLGYEIFGHVLKLGFDVDMYVH-------------NAVIHV 123
            C  LG              + +           DVD  V              ++++ +
Sbjct: 150 ACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSL 209

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           F   G +  A  VFD    +++ +W ++I+ F R+G   EA+ LF DM+ E    DE  M
Sbjct: 210 FGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVM 269

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + +V+ACA+LE    G   H     +GL   + + NAL+ MY     + +A  +FDS   
Sbjct: 270 VCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQC 329

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
               S  +MI GY K G +  A+++F  +P+K  V W  +I G VQ  +S EAL +F+ M
Sbjct: 330 LDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNM 389

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           QA GIKPD VT V  +SAC+ + +L+ G  +H +I +  + + V+LGT+L+DMY KCG +
Sbjct: 390 QAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCL 449

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEITFLGILSA 422
             AL+VF  M ER +  + A+I GLA++G  + ++  FSEM       P+EITF G+LSA
Sbjct: 450 ESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSA 509

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLV+EG+ +F  M   + + P ++HY CMVDLLGR+G ++EAE LI SMPM+ DV 
Sbjct: 510 CRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVP 569

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
            WGAL  +C  HG+  +GER   KL+ LDP   G + +L+N+Y    MW+    +R  M+
Sbjct: 570 AWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMK 629

Query: 543 ERGVEKTPGCSSIE 556
           +  V K PG S +E
Sbjct: 630 QWHVPKIPGSSVVE 643


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/438 (40%), Positives = 247/438 (56%), Gaps = 31/438 (7%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NS+I  ++       ++ +F  M    + PD  T   ++ A AQL D  +G+ IH  + +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    V  + AL+ +Y  C  +  A ++FD                             
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFD----------------------------- 148

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
             ++PE+  V WNA+I GY   ++  +A+  F  M A G +P   T V  LSACS LGA 
Sbjct: 149 --EMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G WIH FI      LNV +GTAL+DMYAKCG + +  +VF E+ E+N  T+  +I G 
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A++G+   A+  FS M+     PDE+TFLG+L ACCH GLV EGR  F  M   F L P+
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY CMVDLLGR+GLLEEA +LI+SM +  D ++W AL  ACR+HGN  +GE    +L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           EL+P +   YVLL+N+Y     W E GK+R MM  RG+ K PGCSSIE+N ++YEF+  +
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASN 446

Query: 569 KSHPELEQIYDCLVQLTR 586
              PE E IY  L  L +
Sbjct: 447 DRKPEFEAIYKQLDNLIK 464



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 171/357 (47%), Gaps = 38/357 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS   N  IR +L+  K   ++ ++  ++      PD+ T+P + K  A L    +G  I
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFA-LMHKFSILPDSSTFPAVLKATAQLCDTGVGKMI 111

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G V+++GF  D+Y   A++H++ +C  +  A  +FDE   RN V+WN+LI G+  +   
Sbjct: 112 HGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            +AI  FR M  +  +P E T++ ++SAC+ L   N G+ IH +I  + L L V +  AL
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG +   E++F+ +  K V +   +I GYA  G                     
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNG--------------------- 270

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE-K 340
                     +   AL  F  M     KPD VT +  L AC   G + +G W  +F+  K
Sbjct: 271 ----------QGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRW--QFMSMK 318

Query: 341 ENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
           + F L   +     +VD+  + G + +AL++   M  E + + + A++    +HG  
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNT 375



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 14/277 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ +WN  I G+    K  +A+D ++ ML +G  +P   T  ++   C+ LG    G  I
Sbjct: 154 NAVTWNALITGYTHNRKFVKAIDAFRGMLADGA-QPSERTVVVVLSACSHLGAFNQGKWI 212

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              +      ++++V  A+I ++  CG +     VF+E   +N+ +WN LI+G+  +G  
Sbjct: 213 HEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQG 272

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR-EIHWYISESGLTLTVPLANA 220
             A++ F  M +E  +PDEVT +G++ AC     +  GR +      + GL   +     
Sbjct: 273 DAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGC 332

Query: 221 LMDMYVKCGKLESAEEIFDSM------VNKTVVSCTTMIVGYAKFGFLDIAR--KIFDDL 272
           ++D+  + G LE A E+  SM      +    + C   + G  K G   I R  ++  + 
Sbjct: 333 MVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNN 392

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            E YV+  N     Y + +R  E   L   M   GI+
Sbjct: 393 GENYVLLSNI----YSRERRWAEVGKLRGMMNLRGIR 425


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 299/546 (54%), Gaps = 34/546 (6%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           GF  + L+   A  ++ +L+   K+   V   N  SW   + G ++ G   E + L+ +M
Sbjct: 157 GFVMNSLVDMYA--KAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEM 214

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
            R     P  +T   +   CA LG    G  I G V+K G   + ++  +++ ++  C  
Sbjct: 215 -RQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEK 273

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           +  A  VFDE    ++V W ++I G+ ++  P +A++LF   +   + P+ VT+  ++SA
Sbjct: 274 VEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISA 333

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            AQL  L LGR +H    + G   +  + NAL+DMY KC  L  A  IF  ++ K V   
Sbjct: 334 SAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDV--- 390

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
                                       V WN+++ GY +   + E+L LF+ M+  GI 
Sbjct: 391 ----------------------------VAWNSMMAGYSENGMANESLVLFNRMRMQGIS 422

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PDA++ V+ LSAC  L  L  G   H +  K  F  N+ + TAL+++Y+KC ++  A +V
Sbjct: 423 PDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRV 482

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F++M +RNS+T++A+IGG  + G +  +I  F+EM+   + P+E+ F  ILSAC H G+V
Sbjct: 483 FNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMV 542

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
             G++YF  M+  F ++P +KHY+CMVD++ R+G LEEA + I++MP+ A + VWG+   
Sbjct: 543 TAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLH 602

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
            C+LH  +  GE A  K+  L P+    YVL++N+Y     W+++  +R+ M+E+G+ K 
Sbjct: 603 GCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKL 662

Query: 550 PGCSSI 555
           PGCSS+
Sbjct: 663 PGCSSV 668



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 229/471 (48%), Gaps = 49/471 (10%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN-GGTRPDNFTYPLLFKVCA-S 91
           +L     P+++++ V +   ++ G   +AV L++ M R        +    L  K C  S
Sbjct: 77  VLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSLALKACVRS 136

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
              R+ G  +   V+K G   D +V N+++ ++   GDL  A  VFD    RN+VSW S+
Sbjct: 137 ADFRY-GRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSM 194

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           ++G +++G   E + LF +M+ + V P E TM+ +++ACA L  L+ GR IH  + + GL
Sbjct: 195 LSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGL 254

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
           +    ++ +L+DMY KC K+E A  +FD                  +  F+DI       
Sbjct: 255 STNSFISASLLDMYAKCEKVEDARRVFD------------------ELEFVDI------- 289

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                 V W A+I GY Q KR  +AL LF   +   I P++VT    +SA +QL  L  G
Sbjct: 290 ------VLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLG 343

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             +H    K     + V+  ALVDMYAKC  + +A  +F  +  ++ + + +++ G + +
Sbjct: 344 RSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSEN 403

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY------FAQMSSIFRL 445
           G A +++  F+ M   G+ PD I+ +  LSAC     +  G+ +      +A MS+I+  
Sbjct: 404 GMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVN 463

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           +  L  YS   D       L  A+++   M    + V W A+     + G+
Sbjct: 464 TALLNLYSKCAD-------LPSAQRVFNDM-TDRNSVTWSAMIGGYGMQGD 506


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/438 (40%), Positives = 247/438 (56%), Gaps = 31/438 (7%)

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           NS+I  ++       ++ +F  M    + PD  T   ++ A AQL D  +G+ IH  + +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    V  + AL+ +Y  C  +  A ++FD                             
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFD----------------------------- 148

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
             ++PE+  V WNA+I GY   ++  +A+  F  M A G +P   T V  LSACS LGA 
Sbjct: 149 --EMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G WIH FI      LNV +GTAL+DMYAKCG + +  +VF E+ E+N  T+  +I G 
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A++G+   A+  FS M+     PDE+TFLG+L ACCH GLV EGR  F  M   F L P+
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++HY CMVDLLGR+GLLEEA +LI+SM +  D ++W AL  ACR+HGN  +GE    +L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           EL+P +   YVLL+N+Y     W E GK+R MM  RG+ K PGCSSIE+N ++YEF+  +
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASN 446

Query: 569 KSHPELEQIYDCLVQLTR 586
              PE E IY  L  L +
Sbjct: 447 DRKPEFEAIYKQLDNLIK 464



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 171/357 (47%), Gaps = 38/357 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS   N  IR +L+  K   ++ ++  ++      PD+ T+P + K  A L    +G  I
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFA-LMHKFSILPDSSTFPAVLKATAQLCDTGVGKMI 111

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G V+++GF  D+Y   A++H++ +C  +  A  +FDE   RN V+WN+LI G+  +   
Sbjct: 112 HGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            +AI  FR M  +  +P E T++ ++SAC+ L   N G+ IH +I  + L L V +  AL
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG +   E++F+ +  K V +   +I GYA  G                     
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNG--------------------- 270

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE-K 340
                     +   AL  F  M     KPD VT +  L AC   G + +G W  +F+  K
Sbjct: 271 ----------QGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRW--QFMSMK 318

Query: 341 ENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKA 394
           + F L   +     +VD+  + G + +AL++   M  E + + + A++    +HG  
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNT 375



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 14/277 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ +WN  I G+    K  +A+D ++ ML +G  +P   T  ++   C+ LG    G  I
Sbjct: 154 NAVTWNALITGYTHNRKFVKAIDAFRGMLADGA-QPSERTVVVVLSACSHLGAFNQGKWI 212

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              +      ++++V  A+I ++  CG +     VF+E   +N+ +WN LI+G+  +G  
Sbjct: 213 HEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQG 272

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR-EIHWYISESGLTLTVPLANA 220
             A++ F  M +E  +PDEVT +G++ AC     +  GR +      + GL   +     
Sbjct: 273 DAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGC 332

Query: 221 LMDMYVKCGKLESAEEIFDSM------VNKTVVSCTTMIVGYAKFGFLDIAR--KIFDDL 272
           ++D+  + G LE A E+  SM      +    + C   + G  K G   I R  ++  + 
Sbjct: 333 MVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNN 392

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            E YV+  N     Y + +R  E   L   M   GI+
Sbjct: 393 GENYVLLSNI----YSRERRWAEVGKLRGMMSLRGIR 425


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/593 (34%), Positives = 312/593 (52%), Gaps = 54/593 (9%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGL----RFL 97
           ++ S+N  I  F  +     A+ L+ QM R G   PD FT+     V  +L L       
Sbjct: 94  DTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFV-PDPFTFS---SVLGALSLIADEETH 149

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD---------LGLACNVFDESC------- 141
             ++   V K G      V NA++  +VSC           +  A  +FDE+        
Sbjct: 150 CQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEP 209

Query: 142 ---------VRN-----------------LVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
                    VRN                  V+WN++I+G+V  GF  EA  L R M    
Sbjct: 210 AWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLG 269

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT----LTVPLANALMDMYVKCGKL 231
           ++ DE T   ++SA +     N+GR++H Y+  + +       + + NAL+ +Y +CGKL
Sbjct: 270 IQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKL 329

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
             A  +FD M  K +VS   ++ G      ++ A  IF ++P + ++ W  +I G  Q  
Sbjct: 330 VEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNG 389

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             +E L LF++M+  G++P        +++CS LG+LD+G  +H  I +   + ++ +G 
Sbjct: 390 FGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGN 449

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+ MY++CG +  A  VF  MP  +S+++ A+I  LA HG  + AI  + +M+   ++P
Sbjct: 450 ALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILP 509

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D ITFL ILSAC H GLV EGR YF  M   + ++P+  HYS ++DLL R+G+  EA+ +
Sbjct: 510 DRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNV 569

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
             SMP      +W AL   C +HGN+ +G +AA +LLEL PQ  G Y+ L+NMY     W
Sbjct: 570 TESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQW 629

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +E  +VRK+M ERGV+K PGCS IEV  +++ F+V D  HPE+  +Y  L QL
Sbjct: 630 DEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQL 682



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 216/465 (46%), Gaps = 62/465 (13%)

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES--C 141
           L+   C S  + +  Y +F  + K     D+     ++  + + G++ LA  +F+ +   
Sbjct: 37  LIDHYCKSFNIPYARY-LFDKIPK----PDIVAATTMLSAYSAAGNIKLAHQLFNATPMS 91

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-R 200
           +R+ VS+N++I  F  S     A++LF  M+     PD  T   ++ A + + D     +
Sbjct: 92  IRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQ 151

Query: 201 EIHWYISESGLTLTVP-LANALMDMYVKCGK---------LESAEEIFDSMV--NKTVVS 248
           ++H  + + G  L+VP + NALM  YV C           + +A ++FD      +   +
Sbjct: 152 QLHCEVFKWG-ALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPA 210

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            TT+I GY +   L  AR++ + + +   V WNA+I GYV     +EA  L   M + GI
Sbjct: 211 WTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGI 270

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE------NFNLNVVLGTALVDMYAKCGN 362
           + D  T    +SA S  G  + G  +H ++ +       +F L+V    AL+ +Y +CG 
Sbjct: 271 QLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSV--NNALITLYTRCGK 328

Query: 363 IAKALQV-------------------------------FHEMPERNSLTYTAIIGGLALH 391
           + +A +V                               F EMP R+ LT+T +I GLA +
Sbjct: 329 LVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQN 388

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G   + +  F++M   GL P +  + G +++C   G +D G++  +Q+  +   S  L  
Sbjct: 389 GFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDS-SLSV 447

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
            + ++ +  R GL+E A+ +  +MP   D V W A+  A   HG+
Sbjct: 448 GNALITMYSRCGLVEAADTVFLTMPY-VDSVSWNAMIAALAQHGH 491



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 143/353 (40%), Gaps = 57/353 (16%)

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           AQL   +  R +H +I  SG      + N L+D Y K   +  A  +FD +    +V+ T
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 251 TMIVGYAKFGFLDIARKIFDDLPE--KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
           TM+  Y+  G + +A ++F+  P   +  V +NA+I  +  +     AL LF +M+  G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 309 KPDAVTTVHCLSA----------CSQL-------GALDDGIWIHR--------------- 336
            PD  T    L A          C QL       GAL     ++                
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186

Query: 337 -----------FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
                      F E      +    T ++  Y +  ++  A ++   M +  ++ + A+I
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMI 246

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-------Q 438
            G    G   +A      M  +G+  DE T+  ++SA  + GL + GR+  A       Q
Sbjct: 247 SGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQ 306

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
            S  F LS      + ++ L  R G L EA ++   MP+  D+V W A+   C
Sbjct: 307 PSGHFVLSVN----NALITLYTRCGKLVEARRVFDKMPV-KDLVSWNAILSGC 354


>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
 gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
          Length = 521

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/488 (38%), Positives = 273/488 (55%), Gaps = 11/488 (2%)

Query: 84  LLFKVCASLG-LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG-DLGLACNVFDESC 141
           LL   CAS+  LR    ++   ++K G   D    +  +      G D+  A  +     
Sbjct: 38  LLHTRCASMAHLR----QLHAALVKSGLAKDPIAASRAVAFCAGPGRDVSYAERLVRHHP 93

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
             N   WN++I        P  A+ LF DM      P+  T+  +++A A+L     G  
Sbjct: 94  RPNSFMWNTVIRALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAA 153

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H    + GL     + NA + MY  C + + A  +F        V+C + IV  A+ G 
Sbjct: 154 LHGMALKLGLAGDAYVRNATIAMYASCARADEALALFGQCPEFDAVACNSAIVALARAGR 213

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
           +D AR +FD +PE+ V  W+A++  Y +A R  EALALF  MQA G++P+A   V  L  
Sbjct: 214 VDEARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGC 273

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-- 379
           C+ LGALD G W+H +I++    +N ++ TALVDMY KCG++  A QVF     + S   
Sbjct: 274 CASLGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKL 333

Query: 380 -TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
            ++ +++ GLA+HG+  +A++ FSE+   GL PD +TF+ +L+A  H G+ DE +  FA 
Sbjct: 334 SSWNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQAAFAS 393

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M++   + P ++HY C+VD L R+G L EAE  IRSMPMA D  VWGAL   CRLHG+  
Sbjct: 394 MATEHSVEPGIEHYGCLVDALARAGRLREAEDAIRSMPMAPDAAVWGALLSGCRLHGDAE 453

Query: 499 IGERAAMKLLELDPQDSGIYVLLAN-MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
           +G RAA + +  DP+DSG YVL A+ + R  N    AG VR  M E GV K PGCS IEV
Sbjct: 454 LGARAAREAVRCDPRDSGAYVLAASVLARGGNPGRGAG-VRGRMREAGVGKVPGCSMIEV 512

Query: 558 NGLLYEFI 565
           NG+++EF+
Sbjct: 513 NGVVHEFV 520



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 189/424 (44%), Gaps = 63/424 (14%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL     A SR +AFCA    +++ Y  +++ +   PNSF WN  IR   +  +   AV
Sbjct: 59  SGLAKDPIAASRAVAFCA-GPGRDVSYAERLVRHHPRPNSFMWNTVIRALSDGARPEAAV 117

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  ML    T P+  T P L    A LG    G  + G  LKLG   D YV NA I +
Sbjct: 118 ALFVDML-GSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAGDAYVRNATIAM 176

Query: 124 FVSCGDL--------------GLACN-----------------VFDESCVRNLVSWNSLI 152
           + SC                  +ACN                 VFD    R + +W++++
Sbjct: 177 YASCARADEALALFGQCPEFDAVACNSAIVALARAGRVDEARAVFDGMPERTVATWSAMV 236

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           + + R+    EA+ LF  MQ + VEP+   ++ ++  CA L  L+ G  +H YI   G+ 
Sbjct: 237 SAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCASLGALDQGAWVHAYIDRHGVA 296

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           +   +  AL+DMY KCG ++ A ++FD+  ++          G AK              
Sbjct: 297 MNALVVTALVDMYCKCGSVDDARQVFDAARSQ----------GSAKLSS----------- 335

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                  WN+++ G     + +EA+ALF E+++ G+ PD VT +  L+A    G  D+  
Sbjct: 336 -------WNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQ 388

Query: 333 WIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
                +  E +    +     LVD  A+ G + +A      MP   ++  + A++ G  L
Sbjct: 389 AAFASMATEHSVEPGIEHYGCLVDALARAGRLREAEDAIRSMPMAPDAAVWGALLSGCRL 448

Query: 391 HGKA 394
           HG A
Sbjct: 449 HGDA 452


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/532 (37%), Positives = 305/532 (57%), Gaps = 11/532 (2%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V++P  F WNV I+        R+A+ L   ML NG    D F++ L  K C+ LG    
Sbjct: 90  VEDP--FLWNVVIKSHSHGVDPRKALFLLCLMLENG-VPVDKFSFSLALKACSRLGFVKE 146

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G ++ G ++K G   D+++ N +I +++ CG LG A  VFD    R+ VS+NS+I+G+++
Sbjct: 147 GTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLK 206

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVP 216
            G    A  LF  M  E+   + +T   M+   AQ  D +N+  ++   + E  L     
Sbjct: 207 CGLVESAGELFGLMPREK--RNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISW-- 262

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
             N+++  YVK G++E A+ +FD M  + VV+   MI GY K G +  A+ +FD +P + 
Sbjct: 263 --NSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRD 320

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
           VV +N+++ G VQ +   EAL +F+ M+  + + PD  + V  LSA +QLG L   I +H
Sbjct: 321 VVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMH 380

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +I ++ F  +  LG AL+DMY+KCG+I  A++VF  +  ++   + A+IGGLA+HG   
Sbjct: 381 LYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGE 440

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            A     ++    + PD ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CM
Sbjct: 441 SAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 500

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VD+L RSG +E A+ LI  MP+  + V+W     AC  H     GE  A  L+     + 
Sbjct: 501 VDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNP 560

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             YVLL+NMY  + MW++  +VR MM+E+ +EK PGCS IE++G ++EF+ R
Sbjct: 561 SSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFLCR 612


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 185/513 (36%), Positives = 286/513 (55%), Gaps = 41/513 (7%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           R D+FTY  L K  ++ G+  +   +  HV+KLG   D +V NA+I  +   G    A  
Sbjct: 3   RRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           VFDE   R++VSWN+ +   VR G      +LF +M      P++ T             
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM------PEKDT------------- 102

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
                 + W              N ++D Y K G++E+A E+F  M  + VVS +TM+ G
Sbjct: 103 ------VSW--------------NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSG 142

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y K G L++AR IFD +P K +V W  ++    Q     EA  LF +M+   ++ D    
Sbjct: 143 YCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAV 202

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH-EMP 374
           V  L+AC++ G+L  G  IHR++ K N   +  +  AL+DM+ KCG + +A  VF  E  
Sbjct: 203 VSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETV 262

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++S+++ +IIGG A+HG    A+  F++M   G  PD +T + +LSAC H G VDEGR+
Sbjct: 263 QKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRR 322

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F+ M   + + P+++HY CM+DLLGR GL++EA  LI+SMP   + V+WG+L  ACRLH
Sbjct: 323 HFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLH 382

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
            NV   E A  +L +L P ++G Y +L+N+Y ++  W +  K R  M+  G +KT G S 
Sbjct: 383 KNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSW 442

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           +E+N   +EF V D+ H + +QI + + +L+ H
Sbjct: 443 VELNETFHEFTVGDRKHQDSDQISEMVDRLSSH 475



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 179/390 (45%), Gaps = 45/390 (11%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G +   F  + LI   A S++       K+   +   +  SWN A+   +  G++     
Sbjct: 35  GSVEDTFVGNALID--AYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRK 92

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M        D  ++  +       G     +E+F  + +     ++   + ++  +
Sbjct: 93  LFDEM-----PEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTMVSGY 143

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
              GDL +A  +FD+   +NLV+W  +++   + G   EA +LF  M+   VE D   ++
Sbjct: 144 CKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVV 203

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVN 243
            +++ACA+   L+LG+ IH Y+ +  L  +  + NAL+DM+ KCG +  A+ +FD+  V 
Sbjct: 204 SILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQ 263

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           K  VS  ++I G+A  G  D                               +AL LF +M
Sbjct: 264 KDSVSWNSIIGGFAMHGHGD-------------------------------KALELFAQM 292

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGN 362
           +  G  PDAVT ++ LSAC+ +G +D+G      +E++      +     ++D+  + G 
Sbjct: 293 KQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGL 352

Query: 363 IAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           I +A+ +   MP E N + + +++    LH
Sbjct: 353 IKEAVDLIKSMPWEPNEVIWGSLLSACRLH 382


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 200/607 (32%), Positives = 316/607 (52%), Gaps = 75/607 (12%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++   +D   ++  ++   N   WN  + GF + G  +E ++ +  M R+G  +PD FT+
Sbjct: 355 AKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHG-PQPDEFTF 413

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F  CASL     G ++   ++K  F  +++V NA++ ++   G L  A   F+   +
Sbjct: 414 TSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKI 473

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            + VSWN++I G+V+  +  EA  +FR M    V PDEV++  +VSACA +++   G++ 
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQC 533

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  + + GL  +    ++L+DMYVKCG + +A ++F SM  + VVS   +I GY     L
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHL 592

Query: 263 DIARKIFDDLPEKYVVPWNAIIGG------------------------------------ 286
           + A  +F ++    + P      G                                    
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVS 652

Query: 287 ----YVQAKRSKEALALFHEMQ--------------------------------ATGIKP 310
               Y+ ++R  ++  LF E+Q                                +  I P
Sbjct: 653 LLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILP 712

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D  T    L AC+ + +L  G  +H  I    FN++ +  ++L+DMYAKCG++  +LQVF
Sbjct: 713 DQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVF 772

Query: 371 HEMPERNS-LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           HEMP RNS +++ ++I GLA +G A +A+  F +M    ++PDE+TFLG+LSAC H G V
Sbjct: 773 HEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRV 832

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            EGRK F  M + ++L P++ H  CMVD+LGR G L EAE+ I  +   AD ++W  L  
Sbjct: 833 SEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLG 892

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR HG+   G+RAA KL+EL PQ S  YVLL+ +Y +S  W  A  +R+ M+ +GV+K 
Sbjct: 893 ACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKL 952

Query: 550 PGCSSIE 556
           PG S IE
Sbjct: 953 PGYSWIE 959



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 222/455 (48%), Gaps = 33/455 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   + NPN  +WNV I G  + G   EA+  + + L+  G +    +   +    ASL
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLE-LKKTGLKATRSSLGSVLSAIASL 322

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            +   G  +    +K G D ++YV +A+++++  C  +  A  VF+    RN+V WN+++
Sbjct: 323 SMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAML 382

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            GF ++G  +E +  F  M+    +PDE T   + SACA L  L+ G ++H  + ++  T
Sbjct: 383 GGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFT 442

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +ANAL+DMY K G L+ A + F+ M                         KI D+ 
Sbjct: 443 SNLFVANALVDMYAKSGALKEARKQFEFM-------------------------KIHDN- 476

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                V WNAII GYVQ + + EA  +F  M + G+ PD V+    +SAC+ +     G 
Sbjct: 477 -----VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQ 531

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             H  + K   + +   G++L+DMY KCG +  A  VF+ MP RN ++  A+I G  +  
Sbjct: 532 QCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTM-S 590

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +AI  F E+  VGL P E+TF G+L  C    +++ GR+   Q+     LS      
Sbjct: 591 HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVC 650

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             ++ +   S    ++E L   +     +VVW AL
Sbjct: 651 VSLLCMYMNSQRFADSETLFSELQYPKGLVVWTAL 685



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 209/422 (49%), Gaps = 37/422 (8%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I    LK+G  +   + N ++ ++V CG++  A   F     +++ +WNS+++ ++  G 
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
               ++ F  M    V P+E T   ++SAC+ L+D+N G+++H  + + G          
Sbjct: 123 FATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGG 182

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF------------------- 261
           L+DMY KC  L  A  +FD  +N   VS TT+I GY + GF                   
Sbjct: 183 LIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPD 242

Query: 262 ----------------LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                           L  ARK+F  +P   VV WN +I G+ +   ++EA++ F E++ 
Sbjct: 243 QIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKK 302

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           TG+K    +    LSA + L  L+ G  +H    KE  + NV +G+ALV+MYAKC  +  
Sbjct: 303 TGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDA 362

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A QVF+ + ERN + + A++GG A +G A + + +FS M   G  PDE TF  I SAC  
Sbjct: 363 AKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACAS 422

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
              +D G +    M    + +  L   + +VD+  +SG L+EA +    M +  D V W 
Sbjct: 423 LHYLDFGGQLHTVMIKN-KFTSNLFVANALVDMYAKSGALKEARKQFEFMKI-HDNVSWN 480

Query: 486 AL 487
           A+
Sbjct: 481 AI 482



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 233/487 (47%), Gaps = 41/487 (8%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N+D+  K    ++  + F+WN  +  +L+ G     V  +  M  N G RP+ FT+ ++ 
Sbjct: 91  NVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMW-NHGVRPNEFTFAMVL 149

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C+ L     G ++   V K+GF    +    +I ++  C +L  A  VFD +   + V
Sbjct: 150 SACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTV 209

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE----- 201
           SW +LI G+VR GFP EA+++F  MQ     PD++ ++ +++A   L  L   R+     
Sbjct: 210 SWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQI 269

Query: 202 -----IHWYI---------------------SESGLTLT------VPLANALMDMYVKCG 229
                + W +                      ++GL  T      V  A A + M +  G
Sbjct: 270 PNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSM-LNYG 328

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            +  A+ I + + +   V  + ++  YAK   +D A+++F+ L E+ +V WNA++GG+ Q
Sbjct: 329 SMVHAQAIKEGLDDNVYVG-SALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
              ++E +  F  M+  G +PD  T     SAC+ L  LD G  +H  + K  F  N+ +
Sbjct: 388 NGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFV 447

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             ALVDMYAK G + +A + F  M   +++++ AII G        +A   F  M+  G+
Sbjct: 448 ANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGV 507

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
           +PDE++   I+SAC +     +G++    +  +  L       S ++D+  + G++  A 
Sbjct: 508 LPDEVSLASIVSACANVKEFKQGQQCHCLLVKV-GLDTSTCAGSSLIDMYVKCGVVLAAR 566

Query: 470 QLIRSMP 476
            +  SMP
Sbjct: 567 DVFYSMP 573



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 42/361 (11%)

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A L+ L+  + IH    + G+ L   L N ++D+YVKCG ++ A++ F  +  K V +  
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWN 111

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           +++  Y   G       +F  + + +V  WN                         G++P
Sbjct: 112 SVLSMYLDHG-------LFATVVQSFVCMWN------------------------HGVRP 140

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +  T    LSACS L  ++ G  +H  + K  F         L+DMYAKC N+  A  VF
Sbjct: 141 NEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVF 200

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
                 +++++T +I G    G  ++A+  F +M  VG +PD+I  + +++A    G + 
Sbjct: 201 DGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLA 260

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL---IRSMPMAADVVVWGAL 487
           + RK F Q+      +P +  ++ M+    + G  EEA      ++   + A     G++
Sbjct: 261 DARKLFTQIP-----NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSV 315

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYV--LLANMYRDSNMWEEAGKVRKMMEERG 545
             A      ++ G     + ++ +  D  +YV   L NMY   +  + A +V   + ER 
Sbjct: 316 LSAIASLSMLNYGSMVHAQAIK-EGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 546 V 546
           +
Sbjct: 375 I 375



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 23/215 (10%)

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K + P +  +   +Q  R  +A  LF+E      KP AV           L AL     I
Sbjct: 21  KILSPHSEFLQICLQHCRRIQAHNLFNE------KPKAV-----------LQALSTAKVI 63

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H    K    L  +LG  +VD+Y KCGN+  A + F  + +++   + +++     HG  
Sbjct: 64  HSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLF 123

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY-- 452
              +  F  M   G+ P+E TF  +LSAC     ++ G++       +F++    + +  
Sbjct: 124 ATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHC---GVFKMGFGFRSFCQ 180

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             ++D+  +   L +A +L+    +  D V W  L
Sbjct: 181 GGLIDMYAKCRNLRDA-RLVFDGALNLDTVSWTTL 214


>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Cucumis sativus]
          Length = 874

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 304/563 (53%), Gaps = 34/563 (6%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           + L+   ++   +      S+   I G  +     EA++++K M R+ G  P+  T   +
Sbjct: 312 RQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDM-RSAGVAPNEVTMASV 370

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
              C+ +G  +    +   V+KL F   + +   ++H++     L     +F+E  VRN 
Sbjct: 371 MSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNT 430

Query: 146 VSWNSLINGFVRSGFPREAIRLF-----RDM-----------QLERVE------------ 177
           VSWN ++ G+V+SG   +A  LF     RD+           Q++R+             
Sbjct: 431 VSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKS 490

Query: 178 ---PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
              P+EV ++ ++SAC Q   +  GR+ H  I ++G      +   ++  Y  C +++ A
Sbjct: 491 DLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLA 550

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
              +       + S   MIVG+ K G +D AR+IFD +PEK V  W+ +I GY Q +   
Sbjct: 551 YLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPD 610

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
            AL LFH M  + ++P+ +T V   SA + LG L +G W H ++  +   LN  L  A++
Sbjct: 611 VALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAII 670

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           DMYAKCG+I  AL VF ++ ++ S    + AII GLA+HG A  ++  FS +    +  +
Sbjct: 671 DMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLN 730

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            ITFLG+LSACCH GLV+ G +YF  M +   + P +KHY C+VDLLGR G L EAE+++
Sbjct: 731 SITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIV 790

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           R+MPM ADVV+WG L  + R HG V IGERAA  L  L P      VLL+N+Y D+ +WE
Sbjct: 791 RTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWE 850

Query: 533 EAGKVRKMMEERGVEKTPGCSSI 555
           +A  VR+ ++ + + ++PG S +
Sbjct: 851 DAALVRRAIQSQRMIRSPGYSGV 873



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 223/478 (46%), Gaps = 66/478 (13%)

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K CAS      G +I   VLK GF+ + ++ N++I+++V CG L  A  +FD   V + 
Sbjct: 239 LKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDS 298

Query: 146 VSWNSLINGFVR-----------SGFPR--------------------EAIRLFRDMQLE 174
           VS N +++G+V+           +  P                     EAI +F+DM+  
Sbjct: 299 VSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSA 358

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            V P+EVTM  ++SAC+ +  +   R +H  + +      V ++  L+ MY     L+  
Sbjct: 359 GVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDT 418

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
           + +F+ M  +  VS   M+ GY K G +D AR++F+ +PE+ V  W  +I G+VQ KR +
Sbjct: 419 KRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLR 478

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           +AL L+  M+ + + P+ V  V  LSAC Q  ++++G   H  I K  F     +   ++
Sbjct: 479 KALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATII 538

Query: 355 DMYAKC-------------------------------GNIAKALQVFHEMPERNSLTYTA 383
             YA C                               G I +A Q+F  MPE++  +++ 
Sbjct: 539 SFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWST 598

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSI 442
           +I G A +     A+  F  MI   + P+EIT + + SA    G + EGR     + + +
Sbjct: 599 MISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKV 658

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSI 499
             L+  L   + ++D+  + G ++ A  + R +    + V  W A+     +HG+ ++
Sbjct: 659 IPLNDNLS--AAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANL 714



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 172/369 (46%), Gaps = 62/369 (16%)

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           E++++  +  CA    ++ G++IH  + + G      + N+L++MYVKCG L SA  +FD
Sbjct: 232 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFD 291

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           S      VSC  M+ GY K   L+ AR++F  +PE+  V +  +I G  Q     EA+ +
Sbjct: 292 SCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEV 351

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM--- 356
           F +M++ G+ P+ VT    +SACS +G + +   +H  + K +F   V++ T L+ M   
Sbjct: 352 FKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCV 411

Query: 357 ----------------------------YAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
                                       Y K G + +A ++F  +PER+  ++  +I G 
Sbjct: 412 FSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGF 471

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY------------- 435
               +   A+  +S M    L P+E+  + +LSAC     ++EGR++             
Sbjct: 472 VQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFD 531

Query: 436 FAQMSSI---------------FRLSPKLKHYSCMVDLLG--RSGLLEEAEQLIRSMPMA 478
           F Q + I               +++S K    S  V ++G  ++G++++A Q+   MP  
Sbjct: 532 FIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMP-E 590

Query: 479 ADVVVWGAL 487
            DV  W  +
Sbjct: 591 KDVFSWSTM 599



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 83/365 (22%)

Query: 286 GYVQAKRSKEALALF-----HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           G  + +R K+ALA        +  ++      ++ V  L  C+   A+  G  IH  + K
Sbjct: 201 GTKRGRRHKKALATLGLNGGRDQPSSSSLDCELSVVSALKYCASSSAISSGQQIHAIVLK 260

Query: 341 ENFNLNVVLGTALVDMYAKCG-------------------------------NIAKALQV 369
             FN N  +  +L++MY KCG                                +  A Q+
Sbjct: 261 YGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQL 320

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F +MPER  ++YT +I GLA +    +AI  F +M   G+ P+E+T   ++SAC H G +
Sbjct: 321 FAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGI 380

Query: 430 DEGRKYFA-----QMSSIFRLSPKLKHYSCMVDLLG------------------------ 460
              R   A         +  +S  L H  C+   L                         
Sbjct: 381 WNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGY 440

Query: 461 -RSGLLEEAEQLIRSMPMAADVVVWGALF--FACRLHGNVSIGERAAMKLLELDPQDSGI 517
            +SGL+++A +L   +P   DV  W  +   F        ++   +AM+  +L P +  I
Sbjct: 441 VKSGLVDQARELFERIP-ERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLI 499

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERG------VEKT-----PGCSSIEVNGLLYEFIV 566
             LL+   +  ++ EE  +   ++ + G      ++ T       C  I++  L Y+  +
Sbjct: 500 VDLLSACGQSVSI-EEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQ--M 556

Query: 567 RDKSH 571
            DKSH
Sbjct: 557 SDKSH 561


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/532 (36%), Positives = 305/532 (57%), Gaps = 11/532 (2%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V++P  F WNV I+        R+A+ L   ML +     D F+  L  K C+ LG    
Sbjct: 68  VEDP--FLWNVVIKSHSHGVDPRKALFLLCLMLESS-VPVDKFSLSLALKACSRLGFVKE 124

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G ++ G ++K G   D+++ N +I +++ CG LG A  VFD    R+ VS+NS+I+G+V+
Sbjct: 125 GTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVK 184

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVP 216
            G    A  LF  M  E+   + +T   M+   AQ  D +++  ++   + E  L     
Sbjct: 185 CGLVESAGELFDLMPREK--RNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISW-- 240

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
             N+++  YVK G++E A+ +F+ M  + VV+   MI GY K G + +A+ +FD +P + 
Sbjct: 241 --NSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRD 298

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
           VV +N+++ GYVQ +   EAL +F+ M+  + + PD  + V  LSA +QLG L   I +H
Sbjct: 299 VVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMH 358

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +I ++ F L+  LG AL+DMY+KCG+I  A++VF  +  ++   + A+IGGLA+HG   
Sbjct: 359 LYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGE 418

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
            A     ++    + PD ITF+G+L+AC H GLV EG   F  M    ++ P+L+HY CM
Sbjct: 419 SAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 478

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VD+L RSG ++ A  LI  MP+  + V+W     AC  H     GE  A  L+     + 
Sbjct: 479 VDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNP 538

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             YVLL+NMY  + MW++  +VR MM+E+ +EK PGCS IE++G ++EF+ R
Sbjct: 539 SSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFLCR 590


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 302/514 (58%), Gaps = 16/514 (3%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLRFLGYEI 101
           +F  N+ IR    +   R +   +  +LR G   PD FT P L      L      G ++
Sbjct: 59  TFLHNILIRASASSASPRLSFAAFSSLLRCGLV-PDRFTLPPLLGSAGKLPAFPRTGAQV 117

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSG 159
               ++ GF  D++V NA++ ++ +  D      VF  SC  V ++VSWN++I G+V+ G
Sbjct: 118 HAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFG-SCAGVADVVSWNTVIGGYVKCG 176

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A R+F +M       + V+   MV   A   +L++ RE+  +     +   V   N
Sbjct: 177 EMESAKRVFDEMPRR----NGVSWSTMVGGYAAAGELDVAREM--FDRMPAIGRNVVTWN 230

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +++  + + G L  A ++FD M  + +VS   M+ GY+    +D AR++FD +PEK VV 
Sbjct: 231 SMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVS 290

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           W  +I GY QA R ++ L LF  MQ  + ++P+ VT V  LSAC+ L AL++G W+H FI
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 350

Query: 339 EKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +K    LN    LG AL+DMYAKCG    A+++F+ +  +N   + A+I  LA++G A D
Sbjct: 351 DKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQD 410

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           ++  F +M   G  P++ITF+G+L+AC HGGLVDEGR+ F  M+S   + P++KHY CMV
Sbjct: 411 SVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMV 470

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL--LELDPQD 514
           D+LGR+GLLEEAE+LIRSMPMA DV+V+GAL  ACR+H    + ER   ++  L L+ Q 
Sbjct: 471 DMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQ 530

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
           SG +VL++++Y  +  W +  + R++++  G+ K
Sbjct: 531 SGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/440 (39%), Positives = 264/440 (60%), Gaps = 5/440 (1%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN----L 198
           R++   ++LI    RS  P  A+ L+  +    + P   T+  ++ + A    +     L
Sbjct: 35  RSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVL 94

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVK-CGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
              +H +  + GL   V ++NAL+ ++    G L     +  +       +  T+I  YA
Sbjct: 95  ALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYA 154

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
           + G L  AR +FD++P +  V W+A++ GYVQA   +EAL +F  MQA  ++PD    V 
Sbjct: 155 RAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVG 214

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L+AC+Q GAL+ G W+H +++     +N+  GTALVDMY+KCG +  A+ VF  M  +N
Sbjct: 215 VLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKN 274

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            L +T +I GLA+HG+  +A+  F++M   G+ PD+I F+G+L AC H GLVD+GR+ F 
Sbjct: 275 VLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFD 334

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M   + + PK++HY CMVDLL R+G L EA+++I+ MPM  D ++WGAL   CR H NV
Sbjct: 335 SMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNV 394

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
              E  A   + L+P  SG YVLL+N+Y  S     A ++R +M E+GV+KTPGCS++EV
Sbjct: 395 EFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEV 454

Query: 558 NGLLYEFIVRDKSHPELEQI 577
           NG++++FIV D SHP ++ I
Sbjct: 455 NGVIHQFIVGDLSHPRIKDI 474



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 183/397 (46%), Gaps = 71/397 (17%)

Query: 34  ILFNVQNPNSFSWNVA-IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-- 90
           +L + Q P S   + A IR    + +   A+ LY  +LR  G  P   T P L K  A  
Sbjct: 27  LLTSGQLPRSVELHDALIRALSRSARPHLALPLYAHLLR-AGLLPTPHTLPSLLKSMALS 85

Query: 91  --SLGLRFLGYEIFGHVLKLGFD--------------------------------VDMYV 116
               G   L   +  H +KLG D                                VD   
Sbjct: 86  PAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDAST 145

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            N +I  +   G L  A  +FDE   RN VSW++++NG+V++G  REA+R+F  MQ E V
Sbjct: 146 FNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDV 205

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            PD+  ++G+++ACAQ   L  G+ +H Y+   G+ + +    AL+DMY KCG+++ A +
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F+ M  K V++ TTMI G A  G                               R  EA
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHG-------------------------------RGSEA 294

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVD 355
           + LF +M+++GI+PD +  +  L AC+  G +D G  +    + K      +     +VD
Sbjct: 295 VMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVD 354

Query: 356 MYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           + A+ G + +A ++  +MP E ++L + A++ G   H
Sbjct: 355 LLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFH 391



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 103/261 (39%), Gaps = 44/261 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+   +     +   +Q  N  +W   I+G    G+  EAV L+ QM  + G RPD+  +
Sbjct: 255 SKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQM-ESSGIRPDDIAF 313

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C   GL   G E+F  +++                       G+   +    C+
Sbjct: 314 IGVLCACTHAGLVDKGRELFDSMVR---------------------KYGIKPKIEHYGCM 352

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            +L++         R+GF  EA  + + M +   EPD +    +++ C   +++     +
Sbjct: 353 VDLLA---------RNGFLYEAKEMIQKMPM---EPDALIWGALMAGCRFHKNVEFAEYV 400

Query: 203 --HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV---VSCTTMIVGYA 257
             HW + E   +    L   L ++Y   G+  SA EI   M  K V     C+T+ V   
Sbjct: 401 AKHWILLEPDKSGAYVL---LSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGV 457

Query: 258 KFGFL--DIARKIFDDLPEKY 276
              F+  D++     D+  K+
Sbjct: 458 IHQFIVGDLSHPRIKDILSKW 478


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/525 (35%), Positives = 303/525 (57%), Gaps = 8/525 (1%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   ++N ++ SW   I  +   G   EA+DLY+QM  +G  +PD+ T+      C  L
Sbjct: 13  KVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADG-IQPDSITFTSALLACTKL 71

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  I   ++    + D +V +A+I+++  CGD+  A   F++   +++V W SL+
Sbjct: 72  AD---GKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLM 127

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             +V++G  REA+ L+  M  E V  D VT +  + ACA L  L  G+ IH  +SE G  
Sbjct: 128 TAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQ 187

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            ++ +  AL+ MY KCG+L++A  +F+ + +   V    ++  YAK G L++A+  F+  
Sbjct: 188 -SLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQ-NALVTMYAKCGSLELAKSAFEAS 245

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
             K +V WNA+IG Y Q    +EAL L+  M + G+ PD VT    LSAC+  G+L  G 
Sbjct: 246 GRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGR 305

Query: 333 WIH-RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            IH R ++ ++F  ++++ TALV+MY +CG +  A  +F +M +R+ L++TA+    A  
Sbjct: 306 EIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQ 365

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G A   +  + EM+  G+ P+EITF  IL  C H GL+  G + F +M S   + P  +H
Sbjct: 366 GHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREH 425

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           + CMVDLLGRSG L +AE L+ SMP   D V W  +  +C+ H +    +RAA ++ ELD
Sbjct: 426 FLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELD 485

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           P+++ +Y LL++++  + + +EA +V+  M+E G++K PG S IE
Sbjct: 486 PENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 530



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 179/394 (45%), Gaps = 65/394 (16%)

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG +  A  VFD    R+ VSW S+I+ +  +GF  EA+ L++ M  + ++PD +T
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
               + AC +L D   G+ IH  I  S +     + +AL++MY +CG + SA + F+ + 
Sbjct: 61  FTSALLACTKLAD---GKAIHARIVSSNMESDF-VGSALINMYARCGDVSSARQAFEKIQ 116

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           NK VV                                W +++  YVQ    +EAL L+  
Sbjct: 117 NKHVVC-------------------------------WTSLMTAYVQTGHYREALDLYGR 145

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN------------------ 344
           M   G+  D VT V  L AC+ LGAL +G  IH  + +  F                   
Sbjct: 146 MDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGEL 205

Query: 345 -----------LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
                       NV +  ALV MYAKCG++  A   F     ++ +++ A+IG  A HG 
Sbjct: 206 DAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGL 265

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +A+  +  M   G++PDE+T    LSAC   G +  GR+  +++         L   +
Sbjct: 266 GREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQT 325

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +V++ GR G LE A  +   M    DV+ W A+
Sbjct: 326 ALVNMYGRCGRLETARSMFEDMGQ-RDVLSWTAM 358



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 33/268 (12%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y K G ++ ARK+FD +  +  V W ++I  Y       EAL L+ +M A GI+PD++T 
Sbjct: 2   YGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITF 61

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              L AC++L    DG  IH  I   N   + V G+AL++MYA+CG+++ A Q F ++  
Sbjct: 62  TSALLACTKLA---DGKAIHARIVSSNMESDFV-GSALINMYARCGDVSSARQAFEKIQN 117

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           ++ + +T+++      G   +A+  +  M   G+  D +T++  L AC   G + EG+  
Sbjct: 118 KHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAI 177

Query: 436 FAQMS---------------------------SIF-RLSPKLKHYSCMVDLLGRSGLLEE 467
             ++S                           ++F RL+  +   + +V +  + G LE 
Sbjct: 178 HLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLEL 237

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHG 495
           A+    +     D+V W A+  A   HG
Sbjct: 238 AKSAFEASGR-KDLVSWNAMIGAYAQHG 264


>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/453 (39%), Positives = 275/453 (60%), Gaps = 3/453 (0%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GD+  +  VF +     + SWN++I G+  S  P +++ +F  M    V PD +T   +V
Sbjct: 62  GDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLV 121

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            A A+L +   G  +H +I ++G      + N+L+ MY  CG    A+++FDS+  K VV
Sbjct: 122 KASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVV 181

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S  +M+ GYAK G + +A+K F+ + EK V  W+++I GYV+A    EA+A+F +MQ+ G
Sbjct: 182 SWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAG 241

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            K + VT V    AC+ +GAL+ G  I+++I      L +VL T+LVDMYAKCG I +AL
Sbjct: 242 PKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEAL 301

Query: 368 QVFHEMPERNS--LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
            +F  + +  +  L + A+IGGLA HG   +++  F EM  VG+ PDE+T+L +L+AC H
Sbjct: 302 LIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAH 361

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
           GGLV E   +F  +S    ++P  +HY+CMVD+L R+G L  A Q I  MP      + G
Sbjct: 362 GGLVKEAWFFFESLSKC-GMTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLG 420

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
           AL   C  H N+++ E    KL+EL+P   G Y+ L+NMY     W++A  +R+ ME RG
Sbjct: 421 ALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRG 480

Query: 546 VEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           V+K+PG S +E++G+L+ FI  DK+HP+ E+ Y
Sbjct: 481 VKKSPGFSFVEISGVLHRFIAHDKTHPDSEETY 513



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 198/410 (48%), Gaps = 62/410 (15%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           S+++ F A+S S +++Y  ++   + +P  FSWN  IRG+  +    +++ ++ +MLR  
Sbjct: 50  SKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLR-L 108

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G  PD  TYP L K  A L  +  G  +  H++K G + D ++ N++IH++ +CG+   A
Sbjct: 109 GVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWA 168

Query: 134 CNVFDESCVRNLVSWN-------------------------------SLINGFVRSGFPR 162
             VFD    +N+VSWN                               SLI+G+V++G   
Sbjct: 169 QKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYS 228

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+ +F  MQ    + +EVTM+ +  ACA +  L  GR I+ YI ++GL LT+ L  +L+
Sbjct: 229 EAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLV 288

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY KCG +E A  IF                           R++     +  V+ WNA
Sbjct: 289 DMYAKCGAIEEALLIF---------------------------RRVSKSQTD--VLIWNA 319

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +IGG       +E+L LF EMQ  GI PD VT +  L+AC+  G + +  +    + K  
Sbjct: 320 VIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLSKCG 379

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
                     +VD+ A+ G +  A Q   +MP E  +    A++ G   H
Sbjct: 380 MTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLSGCINH 429


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 294/542 (54%), Gaps = 34/542 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I GF + G +   V L+ +M   G  R D+ T   L     SL    +   I   
Sbjct: 122 SWNSMILGFAQLGFVDRVVSLFCEMGIEG-IRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGFVRSGFPR 162
            +K+G D D+ V N  I  +  CG+ GLA  VFD  +  ++  VSWNS+I G+       
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCS 240

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           +A+  F+ M       D  T++ ++S+C Q E L  G+ IH +  + G    + + N L+
Sbjct: 241 KAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLI 300

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            MY KCG + SA                               R +FD++  K  V W A
Sbjct: 301 SMYSKCGDIGSA-------------------------------RYLFDNMLGKTRVSWTA 329

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GY +     EA+ LF  M+A G KPD VT +  +S C Q GAL+ G WI  +     
Sbjct: 330 MIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANG 389

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
              N+++  AL+D+YAKCG++  A ++F+ MPE++ +++T +I G AL+G+  +A+  F 
Sbjct: 390 LKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFF 449

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M+ +GL P+ ITFL +L AC H G +++G + F  M+ +++++P L HYSCM DLLGR 
Sbjct: 450 QMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRK 509

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G L+EA + I++MP   DV +W  L  AC++H NV IGE  A  L EL+PQ +  YV +A
Sbjct: 510 GRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMA 569

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           N+Y  +  W+    +R MM+     K+PG S ++VNG  +EF V D+ HPE   IY+ L 
Sbjct: 570 NIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVNGKTHEFTVEDRCHPEGLLIYETLE 629

Query: 583 QL 584
            L
Sbjct: 630 NL 631



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 227/467 (48%), Gaps = 43/467 (9%)

Query: 38  VQNPNSFS-------WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            Q+ N FS       WN +I   +  G   +A+ L++QM +NG   P+N T+P + K C+
Sbjct: 7   TQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNG-LEPNNLTFPSVAKACS 65

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            L        +  HV+K  F  D++V  +V+ ++V C  LG A N+F     R++ SWNS
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNS 125

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I GF + GF    + LF +M +E +  D VT+IG+  +   L+DL +   IH +  + G
Sbjct: 126 MILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG 185

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVN--KTVVSCTTMIVGYAKFGFLDIARKI 268
           +   V ++N  +  Y KCG+   AE +FD +    KT VS  +MI GYA F         
Sbjct: 186 IDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHF--------- 236

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                 ++  +A+  F +M   G + D  T +  LS+C Q   L
Sbjct: 237 ----------------------EQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVL 274

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G  IH    +   + ++ +   L+ MY+KCG+I  A  +F  M  +  +++TA+I G 
Sbjct: 275 FHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGY 334

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A  G   +A++ FS M  VG  PD +T + ++S C   G ++ G K+    ++   L   
Sbjct: 335 AEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG-KWIDTYATANGLKDN 393

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           L   + ++D+  + G ++ A +L  +MP    +V W  L   C L+G
Sbjct: 394 LMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGCALNG 439



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 42/226 (18%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D   ++ + +   +  SW   I G    G+ +EA+ L+ QM+   G +P++ T+  + 
Sbjct: 409 SMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVEL-GLKPNHITFLAVL 467

Query: 87  KVCASLGLRFLGYEIFG---HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
           + C   G    G+E F     V K+   +D Y                        SC+ 
Sbjct: 468 QACNHAGFLEKGWECFNLMTKVYKINPGLDHY------------------------SCMA 503

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +L+          R G  +EA    ++M     +PD      ++SAC   +++ +G  + 
Sbjct: 504 DLLG---------RKGRLKEAFEFIQNMPF---KPDVGIWSVLLSACKIHQNVVIGECVA 551

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVS 248
           +++ E      VP    + ++Y   GK +    I   M  NK + S
Sbjct: 552 YHLFELEPQTAVPYVQ-MANIYASAGKWDRVAAIRTMMKCNKAMKS 596


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/411 (42%), Positives = 254/411 (61%), Gaps = 7/411 (1%)

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWY-ISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           PDEVT+  ++SACA L     GR++H + +    L   + L NAL+DMY KCG+   A  
Sbjct: 8   PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 67

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           IFDSM +++VVS T+++ GYAK   ++ A+ +F  + EK V+ WN +I  Y Q    +EA
Sbjct: 68  IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 127

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN------VVLG 350
           + LF +++   I P   T  + L+AC  +  L  G   H  + KE F  +      V +G
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 187

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            +LVDMY K G+I    +VF  M  R+++++ A+I G A +G+A DA+  F  M+     
Sbjct: 188 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 247

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           PD +T +G+LSAC H GLVDEGR++F  M+    ++P   HY+CMVDLLGR+G L+EAE+
Sbjct: 248 PDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEE 307

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
           LI+ MP   D V+W +L  ACRLH NV +GER A +L ELDP++SG YVLL+NMY +   
Sbjct: 308 LIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGK 367

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           W +  +VR+ M++RGV K PGCS IE+   +  F+ RD  HP   +I+  L
Sbjct: 368 WADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTL 418



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 71/355 (20%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACN 135
           PD  T   +   CA L     G ++  H++K      DM ++NA++ ++  CG    A  
Sbjct: 8   PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 67

Query: 136 VFD---------ESCV----------------------RNLVSWNSLINGFVRSGFPREA 164
           +FD         E+ +                      +N+++WN LI  + ++G   EA
Sbjct: 68  IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 127

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL------TVPLA 218
           IRLF  ++ + + P   T   +++AC  +  L LG++ H ++ + G          V + 
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 187

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N+L+DMY+K G ++   ++F+ M  +  VS   MIVGYA+ G                  
Sbjct: 188 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG------------------ 229

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRF 337
                        R+K+AL LF  M  +   PD+VT +  LSAC   G +D+G    H  
Sbjct: 230 -------------RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFM 276

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            E      +    T +VD+  + G++ +A ++  +MP E +S+ + +++G   LH
Sbjct: 277 TEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLH 331



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 13/241 (5%)

Query: 13  PSRLIA-----FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           PSR +          ++S N++    +   +   N  +WNV I  + + G+  EA+ L+ 
Sbjct: 73  PSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFV 132

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF------DVDMYVHNAVI 121
           Q+ R+    P ++TY  +   C ++ +  LG +   HVLK GF      + D++V N+++
Sbjct: 133 QLKRDS-IWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 191

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            +++  G +     VF+    R+ VSWN++I G+ ++G  ++A+ LF  M      PD V
Sbjct: 192 DMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSV 251

Query: 182 TMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           TMIG++SAC     ++ GR   H+   + G+T +      ++D+  + G L+ AEE+   
Sbjct: 252 TMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKD 311

Query: 241 M 241
           M
Sbjct: 312 M 312



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIH-RFIEKENFNLNVVLGTALVDMYAKCG 361
           M ATG  PD VT    +SAC+ L A  +G  +H   ++++    ++VL  ALVDMYAKCG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
              +A  +F  MP R+ ++ T+I+ G A      DA   FS+M+   +    I +  +++
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIA 116

Query: 422 ACCHGGLVDEGRKYFAQM--SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           A    G  +E  + F Q+   SI+   P    Y  +++  G   +L+  +Q
Sbjct: 117 AYAQNGEEEEAIRLFVQLKRDSIW---PTHYTYGNVLNACGNIAVLQLGQQ 164



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+  G  PDE+T   ++SAC       EGR+  A M    RL   +   + +VD+  + G
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 464 LLEEAEQLIRSMP 476
              EA  +  SMP
Sbjct: 61  RTWEARCIFDSMP 73


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 274/461 (59%), Gaps = 1/461 (0%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGM 186
           GD+  A  +F++    N+  +NS+I  +  +    + IR+++ +  + +E PD  T   M
Sbjct: 56  GDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFM 115

Query: 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
             +CA L    LG+++H ++ + G    V   NAL+DMY+K   L  A ++FD M  + V
Sbjct: 116 FKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDV 175

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
           +S  +++ GYA+ G +  A+ +F  + +K +V W A+I GY       EA+  F EMQ  
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           GI+PD ++ +  L +C+ LG+L+ G WIH + E+        +  AL++MY+KCG +++A
Sbjct: 236 GIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQA 295

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           +Q+F +   ++ ++++ +I G A HG A  A   F EM    + P+ ITFLG+LSAC H 
Sbjct: 296 IQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHV 355

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           GL  +G KYF  M   +++ PK++HY C++D+L R+G LE A ++ ++MP+  D  +WG+
Sbjct: 356 GLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGS 415

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L  +CR  GN+ +   A   L+E++P D G YVLLAN+Y D   WE+  ++RK++ +  +
Sbjct: 416 LLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENM 475

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           +KTPGCS IEVN ++ EF+  D S P   +I   L   T H
Sbjct: 476 KKTPGCSLIEVNNIVQEFVAGDNSKPFWTEISLVLQLFTSH 516



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 195/406 (48%), Gaps = 65/406 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + + GL    F  ++++  C   +  ++DY T++   V NPN F +N  IR +       
Sbjct: 33  IIVHGLSQSSFMVTKMVDLC--DKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYC 90

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           + + +YKQ+LR     PD FT+P +FK CASLG  +LG ++ GH+ K G    +   NA+
Sbjct: 91  DVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENAL 150

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR------------------ 162
           I +++   DL  A  VFDE   R+++SWNSL++G+ R G  +                  
Sbjct: 151 IDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWT 210

Query: 163 -------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
                        EA+  FR+MQL  +EPDE+++I ++ +CA L  L LG+ IH Y    
Sbjct: 211 AMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERR 270

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL     + NAL++MY KCG L  A ++F+    K V+S +TMI GYA  G         
Sbjct: 271 GLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHG--------- 321

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  +  A   F EMQ   +KP+ +T +  LSACS +G   
Sbjct: 322 ----------------------NAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQ 359

Query: 330 DGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            G+     + ++      +     L+D+ A+ G + +A+++   MP
Sbjct: 360 QGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/507 (37%), Positives = 298/507 (58%), Gaps = 14/507 (2%)

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDV--DMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           LL + CA       G E+   +   G       Y+ NA+   + S G++  A  +FDE  
Sbjct: 11  LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP 70

Query: 142 V--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
           +  ++ V W +L++ F R G    +++LF +M+ +RVE D+V+++ +   CA+LEDL   
Sbjct: 71  LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFA 130

Query: 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           ++ H    + G+  +V + NALMDMY KCG +   + IF+ +  K+VVS T ++    K+
Sbjct: 131 QQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKW 190

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHC 318
             L+  R++F ++PE+  V W  ++ GY+ A  ++E L L  EM    G   + VT    
Sbjct: 191 EGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSM 250

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNL-------NVVLGTALVDMYAKCGNIAKALQVFH 371
           LSAC+Q G L  G W+H +  K+   +       +V++GTALVDMYAKCGNI  ++ VF 
Sbjct: 251 LSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFR 310

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            M +RN +T+ A+  GLA+HGK    I  F +MI   + PD++TF  +LSAC H G+VDE
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDE 369

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G + F  +   + L PK+ HY+CMVDLLGR+GL+EEAE L+R MP+  + VV G+L  +C
Sbjct: 370 GWRCFHSLR-FYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSC 428

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
            +HG V I ER   +L+++ P ++   +L++NMY      + A  +R  + +RG+ K PG
Sbjct: 429 SVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPG 488

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIY 578
            SSI VN  ++ F   D+SHP  ++IY
Sbjct: 489 LSSIYVNDSVHRFSSGDRSHPRTKEIY 515



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 77/410 (18%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           +   ++  W   +  F   G +  ++ L+ +M R      D+ +   LF VCA L    L
Sbjct: 71  LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEM-RRKRVEIDDVSVVCLFGVCAKL--EDL 127

Query: 98  GYEIFGH--VLKLGFDVDMYVHNAVIHVFVSCG--------------------------- 128
           G+   GH   +K+G    + V NA++ ++  CG                           
Sbjct: 128 GFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTV 187

Query: 129 ----DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP-DEVTM 183
                L     VF E   RN V+W  ++ G++ +GF RE + L  +M        + VT+
Sbjct: 188 VKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTL 247

Query: 184 IGMVSACAQLEDLNLGREIHWY-------ISESGLTLTVPLANALMDMYVKCGKLESAEE 236
             M+SACAQ  +L +GR +H Y       + E      V +  AL+DMY KCG ++S+  
Sbjct: 248 CSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMN 307

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  + VV+                               WNA+  G     + +  
Sbjct: 308 VFRLMRKRNVVT-------------------------------WNALFSGLAMHGKGRMV 336

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           + +F +M    +KPD +T    LSACS  G +D+G      +        V     +VD+
Sbjct: 337 IDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDL 395

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
             + G I +A  +  EMP   N +   +++G  ++HGK   A     E+I
Sbjct: 396 LGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELI 445



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 16/297 (5%)

Query: 26  KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           + L+   ++   +   N+ +W V + G+L  G  RE ++L  +M+   G   +  T   +
Sbjct: 191 EGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSM 250

Query: 86  FKVCASLGLRFLGYEIFGHVLK----LGFDV---DMYVHNAVIHVFVSCGDLGLACNVFD 138
              CA  G   +G  +  + LK    +G +    D+ V  A++ ++  CG++  + NVF 
Sbjct: 251 LSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFR 310

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
               RN+V+WN+L +G    G  R  I +F  M +  V+PD++T   ++SAC+    ++ 
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDE 369

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYA 257
           G      +   GL   V     ++D+  + G +E AE +   M V    V   +++   +
Sbjct: 370 GWRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCS 429

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNA-----IIGGYVQAKRSKEALALFHEMQATGIK 309
             G ++IA +I  +L +  + P N      +   YV   RS  A  L   ++  GI+
Sbjct: 430 VHGKVEIAERIKRELIQ--MSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIR 484


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 300/566 (53%), Gaps = 43/566 (7%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++DY  K+   +   ++ +WN  + GF ++G   +A  L+++M  N  T PD+ T   L 
Sbjct: 102 SVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEIT-PDSVTVMTLI 160

Query: 87  KVCASLGLRFLGYEIFGHV-LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--ESCVR 143
           +  AS        E    V ++LG DV + V N  I  +  CGDL  A  VF+  +   R
Sbjct: 161 Q-SASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDR 219

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
            +VSWNS+   +   G   +A  L+  M  E  +PD  T I + ++C   E L  GR IH
Sbjct: 220 TVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIH 279

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            +    G    +   N  + MY K     SA  +FD M ++T                  
Sbjct: 280 SHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTC----------------- 322

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
                         V W  +I GY +     EALALFH M  +G KPD VT +  +S C 
Sbjct: 323 --------------VSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCG 368

Query: 324 QLGALDDGIWIHRFIE----KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           + G+L+ G WI    +    K +   NV++  AL+DMY+KCG+I +A  +F   PE+  +
Sbjct: 369 KFGSLETGKWIDARADIYGCKRD---NVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           T+T +I G AL+G  L+A+  FS+MI +   P+ ITFL +L AC H G +++G +YF  M
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
             ++ +SP L HYSCMVDLLGR G LEEA +LIR+M    D  +WGAL  AC++H NV I
Sbjct: 486 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 545

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
            E+AA  L  L+PQ +  YV +AN+Y  + MW+   ++R +M++R ++K PG S I+VNG
Sbjct: 546 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNG 605

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQLT 585
             + F V +  H E E IY  L  L+
Sbjct: 606 KNHSFTVGEHGHVENEVIYFTLNGLS 631



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 223/478 (46%), Gaps = 35/478 (7%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN+ IR  +      E++ L+++M R GG  P+NFT+P + K CA L        +  H
Sbjct: 19  AWNLQIREAVNRNDPVESLLLFREMKR-GGFEPNNFTFPFVAKACARLADVGCCEMVHAH 77

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           ++K  F  D++V  A + +FV C  +  A  VF+    R+  +WN++++GF +SG   +A
Sbjct: 78  LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 137

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
             LFR+M+L  + PD VT++ ++ + +  + L L   +H      G+ + V +AN  +  
Sbjct: 138 FSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWIST 197

Query: 225 YVKCGKLESAEEIFDSMV--NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           Y KCG L+SA+ +F+++   ++TVVS  +M   Y+ FG      + FD            
Sbjct: 198 YGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFG------EAFD------------ 239

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
                        A  L+  M     KPD  T ++  ++C     L  G  IH       
Sbjct: 240 -------------AFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLG 286

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
            + ++      + MY+K  +   A  +F  M  R  +++T +I G A  G   +A++ F 
Sbjct: 287 TDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFH 346

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
            MI  G  PD +T L ++S C   G ++ G+   A+          +   + ++D+  + 
Sbjct: 347 AMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKC 406

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           G + EA  +  + P    VV W  +     L+G      +   K+++LD + + I  L
Sbjct: 407 GSIHEARDIFDNTP-EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFL 463


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/468 (36%), Positives = 271/468 (57%), Gaps = 12/468 (2%)

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           NFT P   K            ++  H+LK    +     + V  V         A  +F 
Sbjct: 24  NFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQ 71

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
                 +  WN+ +  F     P +AI LF  ++   + PD  T   ++ AC++L D+  
Sbjct: 72  LLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G+ +H Y+ + GL   + L N ++ +Y  CG++  A ++FD M  + V++   MI    K
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G  + A K+F ++PE+ V  W ++IGGY Q  +SKEA+ LF EM+  G+ P+ VT V  
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAV 251

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L AC+ +G L  G  IH F  +  +  N+ +   L+DMY KCG +  A ++F  M ER  
Sbjct: 252 LVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTV 311

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           ++++A+I GLA HG+A DA++ F++MI  G+ P+ +TF+GIL AC H G+V++GRKYFA 
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFAS 371

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+  + + P+++HY CMVDL  R+GLL+EA + I +MP+A + VVWGAL   C++H NV 
Sbjct: 372 MTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVK 431

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           + E A   L +LDP + G YV+L+N+Y ++  WE+  +VRK+M +RG 
Sbjct: 432 LAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGT 479



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 216/431 (50%), Gaps = 78/431 (18%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFS-WNVAIRGFLETGKMREAVDLYKQMLRN 72
           SR+ + CA + S    Y  K++F + + +  + WN  +R F E     +A+ L+ + LR 
Sbjct: 51  SRVASVCAFNSS--FSY-AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYR-LRE 106

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
               PD++T   + K C+ L     G  + G+V KLG   +M++ N ++H++  CG++G+
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166

Query: 133 ACNVFDESCVRNLVSWN-------------------------------SLINGFVRSGFP 161
           A  VFD+   R++++WN                               S+I G+ + G  
Sbjct: 167 ARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKS 226

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           +EAI LF +M+   + P+EVT++ ++ ACA + +L LGR IH + + SG    + + N L
Sbjct: 227 KEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTL 286

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMYVKCG LE A  IFD+M  +TVVS + MI G A  G                     
Sbjct: 287 IDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG--------------------- 325

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                     R+++ALALF++M  TG+KP+AVT +  L ACS +G ++ G    ++    
Sbjct: 326 ----------RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKG---RKYFASM 372

Query: 342 NFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK--- 393
             +  +V        +VD++++ G + +A +    MP   N + + A++GG  +H     
Sbjct: 373 TRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKL 432

Query: 394 ALDAISYFSEM 404
           A +A  + S++
Sbjct: 433 AEEATRHLSKL 443


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/622 (32%), Positives = 324/622 (52%), Gaps = 54/622 (8%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNP----NSFSWNVAIRGFLETGKMREAVDLYKQM 69
           +R     A S   NL    +I FN + P    ++  +N  I G+        A++L++ M
Sbjct: 81  ARTTLITAYSALGNLKMAREI-FN-ETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAM 138

Query: 70  LRNGGTRPDNFTYPLLFKVCASL--GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
            R    +PD+FT+  +      +    R  G ++ G V+K G ++   V NA++ V+V C
Sbjct: 139 -RWANFQPDDFTFASVLSASTLIFYDERQCG-QMHGTVVKFGIEIFPAVLNALLSVYVKC 196

Query: 128 ----------------------------------------GDLGLACNVFDESCVRNLVS 147
                                                   GDL  A  + D    +  ++
Sbjct: 197 ASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA 256

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G++  G   +A+ LFR M+L  V+ DE T   ++SACA      LG+++H YI 
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 208 ESGLT----LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           ++ L       + + N L+ +Y K GK++ A +IF  M  K +++  T++ GY   G ++
Sbjct: 317 KNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRME 376

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A+  F  +PEK ++ W  +I G  Q    ++AL LF++M+  G +P+       ++ACS
Sbjct: 377 EAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACS 436

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LGAL++G  +H  I     +  + +G A++ MYA+CG +  A  +F  MP  + +++ +
Sbjct: 437 VLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNS 496

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I  L  HG  + AI  + +M+  G++PD  TFL +LSAC H GLV+EG +YF  M   +
Sbjct: 497 MIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENY 556

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++P   HY+ M+DL  R+G   +A+ +I SMP  A   +W AL   CR HGN+ +G  A
Sbjct: 557 GIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEA 616

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A KL +L PQ  G YVLL+NMY     W +  + RK+M +RGV+K P CS  EV   ++ 
Sbjct: 617 AEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHV 676

Query: 564 FIVRDKSHPELEQIYDCLVQLT 585
           F+V D  HPE+  IY+ L +L 
Sbjct: 677 FLVDDTVHPEVLSIYNYLEKLN 698



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 209/431 (48%), Gaps = 49/431 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D+     +I  + + G+L +A  +F+E+ +  R+ V +N++I G+        AI LFR 
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 171 MQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           M+    +PD+ T   ++SA   +  D     ++H  + + G+ +   + NAL+ +YVKC 
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCA 197

Query: 230 K---------LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
                     + SA ++FD M  +     TT+I GY + G L  AR+I D + E+  + W
Sbjct: 198 SSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAW 257

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NA+I GY+     ++AL LF +M+  G++ D  T    +SAC+  G    G  +H +I K
Sbjct: 258 NAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK 317

Query: 341 ENFNLN----VVLGTALVDMYAKCGNIAKALQVFHE------------------------ 372
              N +    + +G  L+ +Y K G +  A ++F+E                        
Sbjct: 318 NELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEE 377

Query: 373 -------MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
                  MPE+N LT+T +I GLA +G    A+  F++M   G  P++  F G ++AC  
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSV 437

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            G ++ GR+  AQ+  +   S  L   + M+ +  R G++E A  +  +MP   D V W 
Sbjct: 438 LGALENGRQLHAQIVHLGHDS-TLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWN 495

Query: 486 ALFFACRLHGN 496
           ++  A   HG+
Sbjct: 496 SMIAALGQHGH 506



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 179/414 (43%), Gaps = 69/414 (16%)

Query: 190 CAQ-LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           C Q L   +L R +H ++  SG  L   + N L+D+Y K      A ++FD +    V++
Sbjct: 22  CPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIA 81

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            TT+I  Y+  G L +AR+IF++ P   +  V +NA+I GY        A+ LF  M+  
Sbjct: 82  RTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWA 141

Query: 307 GIKPDAVTTVHCLSACS-------QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
             +PD  T    LSA +       Q G +      H  + K    +   +  AL+ +Y K
Sbjct: 142 NFQPDDFTFASVLSASTLIFYDERQCGQM------HGTVVKFGIEIFPAVLNALLSVYVK 195

Query: 360 CG---------NIAKALQVFHEMPERNSLTYT---------------------------- 382
           C           +A A ++F EMP+RN   +T                            
Sbjct: 196 CASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGI 255

Query: 383 ---AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
              A+I G   HG   DA++ F +M  +G+  DE T+  ++SAC  GG    G++  A +
Sbjct: 256 AWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYI 315

Query: 440 SSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
                L+P     L   + ++ L  + G ++ A ++   MP+  D++ W  L     L G
Sbjct: 316 LKN-ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV-KDIITWNTL-----LSG 368

Query: 496 NVSIG--ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
            V+ G  E A     ++  ++   + ++ +    +   E+A K+   M+  G E
Sbjct: 369 YVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYE 422



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 161/392 (41%), Gaps = 64/392 (16%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM---------------LRN 72
           +D   KI + +   +  +WN  + G++  G+M EA   + QM                +N
Sbjct: 344 VDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQN 403

Query: 73  G---------------GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
           G               G  P+++ +      C+ LG    G ++   ++ LG D  + V 
Sbjct: 404 GFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVG 463

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           NA+I ++  CG +  A  +F      + VSWNS+I    + G   +AI L+  M  E + 
Sbjct: 464 NAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGIL 523

Query: 178 PDEVTMIGMVSACAQLEDLNLG-REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           PD  T + ++SAC+    +  G R  +  +   G+         ++D++ + GK   A+ 
Sbjct: 524 PDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKN 583

Query: 237 IFDSMVNKTVVSC-TTMIVGYAKFGFLDI----ARKIFDDLPE---KYVVPWN--AIIGG 286
           + DSM  +        ++ G    G +D+    A K+F  +P+    YV+  N  A +G 
Sbjct: 584 VIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGR 643

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW-----IHRFIEKE 341
           +    R+++       M+  G+K +   +   +     +  +DD +      I+ ++EK 
Sbjct: 644 WNDVARTRKL------MRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKL 697

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           N  +             K G I     V H+M
Sbjct: 698 NLEMK------------KIGYIPDTKYVLHDM 717


>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Vitis vinifera]
          Length = 539

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/464 (39%), Positives = 273/464 (58%), Gaps = 3/464 (0%)

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
           S GD+  +  +F +     + +WNS+I GF +   P  ++ +F  M    V PD +T   
Sbjct: 58  SWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPF 117

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           +  A A+L +L L   +H  I++ GL     +AN+L+ MY  CG + SA ++FD M+ + 
Sbjct: 118 IAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRN 177

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
            VS   M+ GYAK G LD AR++F+ +P++ VV W+++I G V+      ALA+F  M+ 
Sbjct: 178 SVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRV 237

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G K + VT V  L AC+ LGAL+ G  +H+++        +VL T+L+DMYAKCG I +
Sbjct: 238 VGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEE 297

Query: 366 ALQVFHEMP--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           A+ VF  +P  + + L +  IIGGLA HG   +++  F EM  +G++PDEIT+L + SAC
Sbjct: 298 AIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSAC 357

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            HGGLV E   +F  +     + PK +HY+CMVD+L R+G L EA   I  MPM     +
Sbjct: 358 AHGGLVHEAWHFFKSLGKQ-GMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASM 416

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
            GAL   C  H    + ER   KL+EL+P   G Y+ L+N+Y    +W+ A  +R+ ME 
Sbjct: 417 LGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMER 476

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           RGV+K+PG S +EV G L+ FI  DK+H +LE+IY  L  + R 
Sbjct: 477 RGVKKSPGFSFVEVLGTLHRFIAHDKTHNDLEKIYMMLNTIVRQ 520



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 197/422 (46%), Gaps = 62/422 (14%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL  H    SRL++F AIS   ++D+  +I   + +P   +WN  IRGF +      +V
Sbjct: 38  SGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSV 97

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +MLR G   PD+ TYP + K  A L    L   +   + K G   D ++ N++IH+
Sbjct: 98  SVFVKMLRFG-VCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHM 156

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ----------- 172
           + SCGD+G A  VFDE  +RN VSWN++++G+ + G    A ++F  M            
Sbjct: 157 YGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMI 216

Query: 173 ---------------LERV-----EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
                           ER+     + +EVTM+ ++ ACA L  L  GR +H Y+ ++ + 
Sbjct: 217 DGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMR 276

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            T+ L  +LMDMY KCG +E A  +F  +                              +
Sbjct: 277 FTLVLRTSLMDMYAKCGAIEEAIAVFRGV-----------------------------PM 307

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            +  V+ WN IIGG        E+L LF EMQ  GI PD +T +   SAC+  G + +  
Sbjct: 308 DQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAW 367

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
              + + K+           +VD+ ++ G +A+A     +MP E  +    A++ G   H
Sbjct: 368 HFFKSLGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNH 427

Query: 392 GK 393
            +
Sbjct: 428 RR 429



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 152/326 (46%), Gaps = 40/326 (12%)

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           + +G +D + +IF  +P   +  WN+II G+ + K    ++++F +M   G+ PD +T  
Sbjct: 57  SSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYP 116

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
               A ++L  L   + +H  I KE    +  +  +L+ MY  CG+I  A +VF EM  R
Sbjct: 117 FIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIR 176

Query: 377 NSLTYTAIIGGLALHGKALD--------------------------------AISYFSEM 404
           NS+++ A++ G A  G  LD                                A++ F  M
Sbjct: 177 NSVSWNAMLDGYAKCGD-LDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 235

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGRSG 463
             VG   +E+T + +L AC H G +++GR     M  +  R +  L+  + ++D+  + G
Sbjct: 236 RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLR--TSLMDMYAKCG 293

Query: 464 LLEEAEQLIRSMPM-AADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQDSGIYVL 520
            +EEA  + R +PM   DV++W  +      HG V  S+     M++L + P D   Y+ 
Sbjct: 294 AIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVP-DEITYLC 352

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGV 546
           L +      +  EA    K + ++G+
Sbjct: 353 LFSACAHGGLVHEAWHFFKSLGKQGM 378


>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
          Length = 494

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 272/449 (60%), Gaps = 4/449 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
            ++S    +VSW S I    R     EA R F DM+L  +EP+ +T I ++SAC      
Sbjct: 25  LNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFPSG 84

Query: 197 N--LGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           +  L   +H Y  + GL  + V +  A++ MY K G +  A  +FD M +K  V+  TMI
Sbjct: 85  SEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMI 144

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + G +D A K+FD++PE+ ++ W A+I G+V+    +EALA F EMQ +G+ PD V
Sbjct: 145 DGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYV 204

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             +  L+AC+ LGAL  G+W HR++  ++F  NV +  +L+D+Y +CG +  A QVF  M
Sbjct: 205 AIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTM 264

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ ++I G A +G A +++ YF +M   G  PD +TF G L+AC H GLV+EG 
Sbjct: 265 EKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGF 324

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M + +R+SP+++H+ C+VDL  R+G LE+A +++ SMPM  + VV G+L  ACR 
Sbjct: 325 QYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRN 384

Query: 494 HGNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           HGN +I  ER    + +LD +    YV+L+NMY     WE A K+R+ M+  G++K PG 
Sbjct: 385 HGNHTILAERLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGY 444

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SSIE++   + F+  D +H E   I + L
Sbjct: 445 SSIEIDDYTHVFMAGDNAHVETAYIREVL 473



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 174/384 (45%), Gaps = 68/384 (17%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL--GLRFLGYEIF 102
           SW   I       ++ EA   +  M R  G  P++ T+  L   C +   G   L   + 
Sbjct: 35  SWTSRITLLSRDDRLAEAAREFSDM-RLAGIEPNHITFISLLSACGNFPSGSEALSDLLH 93

Query: 103 GHVLKLGFD----------VDMYVH----------------------NAVIHVFVSCGDL 130
           G+  KLG D          + MY                        N +I  ++  G +
Sbjct: 94  GYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQV 153

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  VFDE   R+L+SW ++I GFV+ GF  EA+  FR+MQ+  V PD V +I  ++AC
Sbjct: 154 DNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAAC 213

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
             L  L+ G   H Y+        V ++N+L+D+Y +CG +E A ++FD+M  +TVVS  
Sbjct: 214 TNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWN 273

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++IVG+A  G                                + E+L  F +MQ  G KP
Sbjct: 274 SVIVGFAANG-------------------------------NANESLVYFRKMQEEGFKP 302

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQV 369
           DAVT    L+ACS +G +++G    + ++ +   +  +     LVD+Y++ G +  A++V
Sbjct: 303 DAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKV 362

Query: 370 FHEMPER-NSLTYTAIIGGLALHG 392
              MP + N +   +++     HG
Sbjct: 363 VESMPMKPNEVVIGSLLAACRNHG 386



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 2/215 (0%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   K+   +   +  SW   I GF++ G   EA+  +++M +  G  PD         
Sbjct: 153 VDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREM-QISGVNPDYVAIIAALA 211

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C +LG    G     +V+   F  ++ V N++I ++  CG +  A  VFD    R +VS
Sbjct: 212 ACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVS 271

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REIHWYI 206
           WNS+I GF  +G   E++  FR MQ E  +PD VT  G ++AC+ +  +  G +      
Sbjct: 272 WNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMK 331

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           ++  ++  +     L+D+Y + G+LE A ++ +SM
Sbjct: 332 TDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESM 366


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 182/565 (32%), Positives = 307/565 (54%), Gaps = 34/565 (6%)

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD-VDMY 115
           G++ +A+     + RNG   P   T   L + CA+     LG  +  H+   G    + +
Sbjct: 29  GQLFQAISSLGLLSRNGIRLPSK-TLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTF 87

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR------------------ 157
           + N +I+++  CGD   A  VFDE   RNL SWN +++G+ +                  
Sbjct: 88  LANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKD 147

Query: 158 -------------SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
                        SGF  +A+R +R+++   +  +E +  G+++ C ++++L L ++ H 
Sbjct: 148 VVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHG 207

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            +  +G    + ++++++D Y KC ++  A  +FD M+ + V++ TTM+ GYA++G ++ 
Sbjct: 208 QVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEA 267

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
           AR++FD +PEK  V W ++I GY +     +AL LF +M A  I+PD  T   CL A + 
Sbjct: 268 ARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASAS 327

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTA 383
           + +L+ G  IH ++ + N   N ++ ++L+DMY+KCG +     VF  M ++ + + +  
Sbjct: 328 IASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNT 387

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           II  LA HG+  +AI  F +M+ +G+ PD IT + +L+AC H GLV EG + +  ++S  
Sbjct: 388 IISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCH 447

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + P  +HY+C++DLLGR+G  +     +  MP   +  +W AL   CR+HGN+  G   
Sbjct: 448 GVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREV 507

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A K++ELDPQ S  YVLL++++     WE    VR++M ER V K    S IE+   ++ 
Sbjct: 508 AEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHS 567

Query: 564 FIVRDKSHPELEQIYDCLVQLTRHF 588
           F   D+ HP  E IY  L QL  H 
Sbjct: 568 FTASDRLHPLKEVIYLALKQLAGHM 592



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 170/394 (43%), Gaps = 66/394 (16%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SWN  +  + ++G   +A+  Y++ LR  G   + +++  L  +C  +
Sbjct: 138 KLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRE-LRRLGIGYNEYSFAGLLNICVKV 196

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR--------- 143
               L  +  G VL  GF  ++ + ++V+  +  C ++G A  +FDE  +R         
Sbjct: 197 KELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMV 256

Query: 144 ----------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
                                 N V+W SLI G+ R     +A+ LF  M    + PD+ 
Sbjct: 257 SGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQF 316

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T    + A A +  LN G++IH Y+  + +     + ++L+DMY KCG LE    +FD M
Sbjct: 317 TFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLM 376

Query: 242 VNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
            +K  VV   T+I   A+ G                               R +EA+ +F
Sbjct: 377 GDKWDVVLWNTIISSLAQHG-------------------------------RGQEAIQMF 405

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAK 359
            +M   G+KPD +T +  L+ACS  G + +G+ ++  I        N      L+D+  +
Sbjct: 406 DDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGR 465

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            G+    +    +MP + N   + A++G   +HG
Sbjct: 466 AGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHG 499


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/473 (36%), Positives = 278/473 (58%), Gaps = 31/473 (6%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++ V N +I+ +     L  A  +FD  CVR+ VSW+ ++ GF + G        FR++ 
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
                PD  T+  ++ AC  L++L +GR IH  + + GL L   +  AL+DMYVKC ++E
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIE 212

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A                               R +FD + E+ +V W  +IGGY +  +
Sbjct: 213 DA-------------------------------RFLFDKMQERDLVTWTVMIGGYAECGK 241

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
           + E+L LF +M+  G+ PD V  V  + AC++LGA+     I  +I+++ F L+V+LGTA
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 301

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           ++DMYAKCG +  A ++F  M E+N ++++A+I     HG+   A+  F  M+  G++PD
Sbjct: 302 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPD 361

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           +IT   +L AC H GLV+EG ++F+ M   + +   +KHY+C+VDLLGR+G L+EA +LI
Sbjct: 362 KITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLI 421

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
           +SM +  D  +WGA   ACR H +V + E+AA  LLEL  Q+ G YVLL+N+Y ++  WE
Sbjct: 422 KSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWE 481

Query: 533 EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           +  K+R +M +R ++KTPG + IEV+   ++F V D +HP  ++IY+ L  L+
Sbjct: 482 DVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLS 534



 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 170/472 (36%), Positives = 273/472 (57%), Gaps = 31/472 (6%)

Query: 113  DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
            ++ V N ++  +     L  A  +FD  CVR+ VSW+ ++ GF + G        FR++ 
Sbjct: 769  NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI 828

Query: 173  LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
                 PD  T+  ++ AC  L++L +GR IH  + + GL L   +  AL+DMY KC ++E
Sbjct: 829  RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 888

Query: 233  SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
             A                               R +FD + E+ +V W  +IGGY +   
Sbjct: 889  DA-------------------------------RFLFDKMXERDLVTWTVMIGGYAECGN 917

Query: 293  SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
            + E+L LF +M+  G+ PD V  V  + AC++LGA+     I  +I+++ F L+V+LGTA
Sbjct: 918  ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 977

Query: 353  LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            ++DM+AKCG +  A ++F  M E+N ++++A+I     HG+   A+  F  M+  G++P+
Sbjct: 978  MIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPN 1037

Query: 413  EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            +IT + +L AC H GLV+EG ++F+ M   + +   +KHY+C+VDLLGR+G L+EA +LI
Sbjct: 1038 KITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLI 1097

Query: 473  RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532
             SM    D  +WGA   ACR H +V + E+AA  LLEL PQ+ G Y+LL+N+Y ++  WE
Sbjct: 1098 XSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWE 1157

Query: 533  EAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            +  K+R +M +R ++K PG + IEV+   ++F V D +HP  ++IY+ L  L
Sbjct: 1158 DVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 1209



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 193/392 (49%), Gaps = 36/392 (9%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           ++ G++ +    ++LI F   S  + LD    +   +   +S SW+V + GF + G    
Sbjct: 86  SVHGMLENIVVANKLIYF--YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYIN 143

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
               +++++R G  RPDN+T P + + C  L    +G  I   V K G D+D +V  A++
Sbjct: 144 CFGTFRELIRCGA-RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALV 202

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            ++V C ++  A  +FD+   R+LV+W  +I G+   G   E++ LF  M+ E V PD+V
Sbjct: 203 DMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKV 262

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            M+ +V ACA+L  ++  R I  YI      L V L  A++DMY KCG +ESA EIFD M
Sbjct: 263 AMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM 322

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K V+S + MI  Y   G                               + ++AL LF 
Sbjct: 323 EEKNVISWSAMIAAYGYHG-------------------------------QGRKALDLFP 351

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKC 360
            M ++G+ PD +T    L ACS  G +++G+ +     E  +   +V   T +VD+  + 
Sbjct: 352 MMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRA 411

Query: 361 GNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           G + +AL++   M  E++   + A +G    H
Sbjct: 412 GRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 192/392 (48%), Gaps = 36/392 (9%)

Query: 2    TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
            ++ G++ +    ++L+ F   S  + LD    +   +   +S SW+V + GF + G    
Sbjct: 762  SVHGMLQNLIVANKLVXF--YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMN 819

Query: 62   AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
                +++++R G  RPDN+T P + + C  L    +G  I   V K G D+D +V  A++
Sbjct: 820  CFGTFRELIRCGA-RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALV 878

Query: 122  HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
             ++  C ++  A  +FD+   R+LV+W  +I G+   G   E++ LF  M+ E V PD+V
Sbjct: 879  DMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKV 938

Query: 182  TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             M+ +V ACA+L  ++  R I  YI      L V L  A++DM+ KCG +ESA EIFD M
Sbjct: 939  AMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM 998

Query: 242  VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
              K V+S + MI  Y   G                               + ++AL LF 
Sbjct: 999  EEKNVISWSAMIAAYGYHG-------------------------------QGRKALDLFP 1027

Query: 302  EMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKC 360
             M  +GI P+ +T V  L ACS  G +++G+ +     E  +   +V   T +VD+  + 
Sbjct: 1028 MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRA 1087

Query: 361  GNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
            G + +AL++   M  E++   + A +G    H
Sbjct: 1088 GRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 8/256 (3%)

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + +V    +I  Y+ +  LD A  +FD +  +  V W+ ++GG+ +          F E+
Sbjct: 92  ENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFREL 151

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              G +PD  T    + AC  L  L  G  IH  + K   +L+  +  ALVDMY KC  I
Sbjct: 152 IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREI 211

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             A  +F +M ER+ +T+T +IGG A  GKA +++  F +M   G++PD++  + ++ AC
Sbjct: 212 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 271

Query: 424 CHGGLVDEGR---KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
              G + + R    Y  +    F+L   L   + M+D+  + G +E A ++   M    +
Sbjct: 272 AKLGAMHKARIIDDYIQRKK--FQLDVILG--TAMIDMYAKCGCVESAREIFDRME-EKN 326

Query: 481 VVVWGALFFACRLHGN 496
           V+ W A+  A   HG 
Sbjct: 327 VISWSAMIAAYGYHGQ 342



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 125/255 (49%), Gaps = 6/255 (2%)

Query: 244  KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
            + ++    ++  Y+ +  LD A  +FD +  +  V W+ ++GG+ +          F E+
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827

Query: 304  QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
               G +PD  T    + AC  L  L  G  IH  + K   +L+  +  ALVDMY KC  I
Sbjct: 828  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 887

Query: 364  AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
              A  +F +M ER+ +T+T +IGG A  G A +++  F +M   G++PD++  + ++ AC
Sbjct: 888  EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 947

Query: 424  CHGGLVDEGRKY--FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
               G + + R    + Q    F+L   L   + M+D+  + G +E A ++   M    +V
Sbjct: 948  AKLGAMHKARTIDDYIQRKK-FQLDVILG--TAMIDMHAKCGCVESAREIFDRME-EKNV 1003

Query: 482  VVWGALFFACRLHGN 496
            + W A+  A   HG 
Sbjct: 1004 ISWSAMIAAYGYHGQ 1018



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 37/213 (17%)

Query: 33   KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
            +I   ++  N  SW+  I  +   G+ R+A+DL+  MLR+ G  P+  T   L   C+  
Sbjct: 993  EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRS-GILPNKITLVSLLYACSHA 1051

Query: 93   GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            GL   G   F  + +                     D  +  +V   +CV +L+      
Sbjct: 1052 GLVEEGLRFFSXMWE---------------------DYSVRXDVKHYTCVVDLLG----- 1085

Query: 153  NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
                R+G   EA++L   M  E+   DE      + AC   +D+ L  +    + E  L 
Sbjct: 1086 ----RAGRLDEALKLIXSMTXEK---DEGLWGAFLGACRTHKDVXLAEKAATSLLE--LQ 1136

Query: 213  LTVPLANALM-DMYVKCGKLESAEEIFDSMVNK 244
               P    L+ ++Y   G+ E   +I D M  +
Sbjct: 1137 PQNPGHYILLSNIYANAGRWEDVAKIRDLMSQR 1169


>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
           sativa Japonica Group]
          Length = 503

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/382 (42%), Positives = 240/382 (62%), Gaps = 1/382 (0%)

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD-SMVNKTVVSCTTMIVGYAKF 259
           ++H  +  +G       + +L+  Y  CG + SA  +FD +  +  VVS   MI GY K 
Sbjct: 96  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G L  AR++FD +P + VV W  +IG Y Q K+ +EA+ +F  MQ  GI+PD V  +  L
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC  LG +D G W+HRF+ +      + L  A++DMY KCG++ KAL+VF  M +++ +
Sbjct: 216 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 275

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           T+T +I G ALHG  L+A+  F  M    + P++ITFL +LS C H GL D GR YF  M
Sbjct: 276 TWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTM 335

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
            S +++ P+++HY CM+DLLGR+G L EA  LI+ MP  A+  +WGAL  A R HG+  +
Sbjct: 336 VSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTEL 395

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
           GE+A + L+EL+P +SG Y+LL+N+Y +   W+   ++R  M +RG+   PG SSI+V+G
Sbjct: 396 GEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDG 455

Query: 560 LLYEFIVRDKSHPELEQIYDCL 581
           +++EF  RD SHP L +I + L
Sbjct: 456 MVHEFTSRDGSHPSLHKIREVL 477



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 33/282 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +I  +V  GDL  A  +FD    RN+VSW  +I  + +   P EAI +FR MQ
Sbjct: 141 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 200

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E +EPD V ++ ++SAC  L  ++LG  +H ++   GL   +PL NA++DMYVKCG ++
Sbjct: 201 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVK 260

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A E+F+ M  K++V+ TTMI G+A  G                                
Sbjct: 261 KALEVFEGMEQKSIVTWTTMIAGFALHGL------------------------------- 289

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR-FIEKENFNLNVVLGT 351
             EA+ LF  M+   + P+ +T +  LS CS +G  D G W  +  + +      V    
Sbjct: 290 GLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYG 349

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            ++D+  + G + +A  +  +MP + N+  + A++     HG
Sbjct: 350 CMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHG 391



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 35  LFNVQ-NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LF+V    N  SW + I  + +  +  EA++++++M +  G  PD      +   C  LG
Sbjct: 164 LFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRM-QVEGIEPDGVALLSVLSACGDLG 222

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
           +  LG  +   VL+ G   ++ + NA+I ++V CG +  A  VF+    +++V+W ++I 
Sbjct: 223 VVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIA 282

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY----ISES 209
           GF   G   EA+ LFR M+ E V P+++T + ++S C+ +   +LGR   WY    +S+ 
Sbjct: 283 GFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGR---WYFKTMVSQY 339

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
            +   V     ++D+  + G L  A  +   M  K   +    ++  A+
Sbjct: 340 KIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAAR 388


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 205/581 (35%), Positives = 309/581 (53%), Gaps = 81/581 (13%)

Query: 6   LISHGFAPSRLIAFCAISES---KNLDYCTKILFNVQNP-NSFSWNVAIRGFLETGKMRE 61
           +I H  + S LI    IS S   K++++   + FN   P N F++N  IRG         
Sbjct: 104 IIIHNLSSSSLITTQLISSSSLRKSINHSLAV-FNHHKPKNLFTFNALIRGLTTNSHFFN 162

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A+  ++ MLR+G  +PD  TYP + K  A L    LG  I   +L+ G ++D +V  +++
Sbjct: 163 AIFHFRLMLRSG-IKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLV 221

Query: 122 HVFVSCGDLGLACNVFDESCVR-----NLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            ++V    LG A  VFDES  R     + + WN LI G  ++G  ++A++LF+ M     
Sbjct: 222 DMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAM----- 276

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            P +                     + W              + L+D + K G ++ A E
Sbjct: 277 -PKK-------------------ENVSW--------------STLIDGFAKNGDMDRAME 302

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +FD M  K VVS TTM+ G+++ G                                S++A
Sbjct: 303 LFDQMPEKNVVSWTTMVDGFSRNG-------------------------------DSEKA 331

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L++F +M   G++P+A T V  LSAC+++G L+ G+ IH++I+    +L   LGTALVDM
Sbjct: 332 LSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDM 391

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           YAKCGNI  A +VF E  +++  T+T +I G A+HG +  AI+ F +M+  G+ PDE+ F
Sbjct: 392 YAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVF 451

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           L +L+AC H G VD G  +F  M   + + P +KHY+ +VD+LGRSG L+EA + I  MP
Sbjct: 452 LALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMP 511

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           M  D V+WGALF ACR H    + + A  KLL+L+P  +G Y+ L+N Y     WE+A +
Sbjct: 512 MNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAER 571

Query: 537 VRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           VR +M+ RGV K  G S IEV G ++ F+  D  H + + I
Sbjct: 572 VRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAI 612



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%)

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           + A  I P   T  H +S       +     IH  I   N + + ++ T L+   +   +
Sbjct: 69  LSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKS 128

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           I  +L VF+    +N  T+ A+I GL  +    +AI +F  M+  G+ PD +T+  +L +
Sbjct: 129 INHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKS 188


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 302/564 (53%), Gaps = 46/564 (8%)

Query: 67  KQMLRNGGT--RPDNFTYPLLFKVCASLGLRFLGY--------EIFG---HVLKLGFDVD 113
           KQ+ R+ G    P + + PL    C S     L          E+ G    ++K     D
Sbjct: 108 KQLTRSIGNFVSPPSISMPLQPPSCPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQD 167

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
            ++ +  I    +   +      F +    N+  +N++I GFV  G+P  A++ +  M  
Sbjct: 168 CFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLE 227

Query: 174 E-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           E  V P   T   +V AC  +  + LG+ +H +I + G    + +  AL+D Y K   L 
Sbjct: 228 ESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILS 287

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV---- 288
            A ++FD M  +   + T M+   A+ G +D ARK+F+++PE+    WN +I GY     
Sbjct: 288 EARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGN 347

Query: 289 ---------------------------QAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
                                      Q K+ ++ALA++ EM+  GI PD VT     SA
Sbjct: 348 VESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASA 407

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+ +GAL+ G  IH ++  +  NL+V +G+ALVDMYAKCG++  +L +F ++ ++N   +
Sbjct: 408 CAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCW 467

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            A+I GLA+HG A  A+  F+ M    +MP+ +TF+ ILSAC H GLVDEGR  F  M+ 
Sbjct: 468 NAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTR 527

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + + P ++HY CMVD+L +SG L EA +LI+SM    + ++WGAL   C+LHGN  I E
Sbjct: 528 DYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAE 587

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT-PGCSSIEVNGL 560
            A  +L+ L+P +SG Y LL +MY +   W E   +R MM+E+GVEK  PG S IE+ G 
Sbjct: 588 DAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGT 647

Query: 561 LYEFIVRDKSHPELEQIYDCLVQL 584
           +++F     SHP+ ++IY  L +L
Sbjct: 648 IHQFSASADSHPDSDKIYFVLTEL 671



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 192/431 (44%), Gaps = 102/431 (23%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
            ++NPN F +N  I+GF+  G    A+  Y  ML      P ++T+  L K C  +    
Sbjct: 193 QMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVE 252

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC--------------- 141
           LG  +  H+ K GF+  ++V  A++  +     L  A  VFDE C               
Sbjct: 253 LGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALA 312

Query: 142 ----------------VRNLVSWNSLINGFVRSG-----------FP------------- 161
                            RN  +WN++I+G+ R G            P             
Sbjct: 313 RVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITC 372

Query: 162 -------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
                  ++A+ ++ +M+L  + PDEVTM  + SACA +  L LG+EIH Y+   GL L 
Sbjct: 373 YSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLD 432

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V + +AL+DMY KCG                                LD++  IF  L +
Sbjct: 433 VYIGSALVDMYAKCGS-------------------------------LDLSLLIFFKLTD 461

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +  WNA+I G      +++AL +F  M+   I P+ VT +  LSAC+  G +D+G   
Sbjct: 462 KNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEG--R 519

Query: 335 HRFIE-KENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            RF+    ++++  ++     +VDM +K G + +AL++   M  E NS+ + A++ G  L
Sbjct: 520 SRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKL 579

Query: 391 HGK---ALDAI 398
           HG    A DA+
Sbjct: 580 HGNCEIAEDAV 590



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 5/212 (2%)

Query: 33  KILFNVQNPNS--FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           ++LFN Q P     SW   I  + +  + ++A+ +Y +M R  G  PD  T   +   CA
Sbjct: 352 ELLFN-QMPTKDIISWTTMITCYSQNKQYQDALAIYSEM-RLNGIIPDEVTMSTVASACA 409

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            +G   LG EI  +V+  G ++D+Y+ +A++ ++  CG L L+  +F +   +NL  WN+
Sbjct: 410 HIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNA 469

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS-ES 209
           +I G    G+  +A+R+F  M+ E++ P+ VT I ++SAC     ++ GR     ++ + 
Sbjct: 470 VIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDY 529

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            +   +     ++DM  K G L  A E+  SM
Sbjct: 530 DIRPDIRHYGCMVDMLSKSGYLNEALELIKSM 561


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/583 (32%), Positives = 313/583 (53%), Gaps = 36/583 (6%)

Query: 5   GLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           GL +H F  + L+ A+C   +   L    ++   + + ++ ++N  + G  + G   +A+
Sbjct: 165 GLDTHVFVCNTLLDAYC---KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  M R  G    +FT+  +  V A +    LG+++   VL+    ++++V+N+++  
Sbjct: 222 QLFAAM-RRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDF 280

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L     +FDE   R+ VS+N +I  +  +      +RLFR+MQ    +   +  
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             M+S    L D+++G++IH  +   GL     L NAL+DMY KCG              
Sbjct: 341 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG-------------- 386

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                             LD A+  F +  EK  + W A+I GYVQ  + +EAL LF +M
Sbjct: 387 -----------------MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 429

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +  G++PD  T    + A S L  +  G  +H ++ +  +  +V  G+ LVDMYAKCG +
Sbjct: 430 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +AL+ F EMPERNS+++ A+I   A +G+A +AI  F  M+  G  PD +TFL +L+AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL DE  KYF  M   + +SP  +HY+C++D LGR G   + ++++  MP  AD ++
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 609

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W ++  +CR+HGN  +   AA KL  ++P D+  YV+L+N+Y  +  WE+A  V+K+M +
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           RGV K  G S +E+   +Y F   D + P +++I D L +L +
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYK 712



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 215/497 (43%), Gaps = 59/497 (11%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S S +L     +  +  + N+ +W + +R     G+  +A+ L++ ML   G  PD  
Sbjct: 83  AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML-GEGVIPDRV 141

Query: 81  TYPLLFKV--CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           T   +  +  C    L           +K G D  ++V N ++  +   G L  A  VF 
Sbjct: 142 TVTTVLNLPGCTVPSLHPFA-------IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFL 194

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           E   ++ V++N+++ G  + G   +A++LF  M+   +     T   +++  A +  L L
Sbjct: 195 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLL 254

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           G ++H  +  S   L V + N+L+D Y KC  L+    +FD M                 
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM----------------- 297

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
                         PE+  V +N II  Y   + +   L LF EMQ  G     +     
Sbjct: 298 --------------PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATM 343

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           LS    L  +  G  IH  +         +LG AL+DMY+KCG +  A   F    E+++
Sbjct: 344 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSA 403

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +++TA+I G   +G+  +A+  FS+M   GL PD  TF  I+ A     ++  GR+  + 
Sbjct: 404 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 463

Query: 439 M------SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           +      SS+F         S +VD+  + G L+EA +    MP   + + W A+  A  
Sbjct: 464 LIRSGYKSSVFS-------GSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYA 515

Query: 493 LHGNVSIGERAAMKLLE 509
            +G      + A+K+ E
Sbjct: 516 HYGEA----KNAIKMFE 528



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 171/397 (43%), Gaps = 47/397 (11%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV----DMYVHNAVIHVFVSCGDLGLA 133
           D  TY L      +LGLR L      H  +  FD     +++  N ++  + S GDL  A
Sbjct: 40  DVLTYRL------NLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++F  S  RN  +W  ++     +G   +A+ LFR M  E V PD VT    V+    L
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVT----VTTVLNL 149

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
               +   +H +  + GL   V + N L+D Y K G L +A  +F  M +K  V+   M+
Sbjct: 150 PGCTVP-SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM 208

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
           +G +K G                                  +AL LF  M+  GI     
Sbjct: 209 MGCSKEGL-------------------------------HTQALQLFAAMRRAGIPATHF 237

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L+  + +  L  G  +H  + +    LNV +  +L+D Y+KC  +    ++F EM
Sbjct: 238 TFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM 297

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           PER++++Y  II   A +  A   +  F EM  +G     + +  +LS       V  G+
Sbjct: 298 PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGK 357

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           +  AQ+  +   S  L   + ++D+  + G+L+ A+ 
Sbjct: 358 QIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKS 393



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 14/252 (5%)

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G L  A  +FD M +K + S   ++  Y+  G L  A+ +F   P +    W  ++  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 289 QAKRSKEALALFHEMQATGIKPD--AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            A R+ +AL+LF  M   G+ PD   VTTV  L  C+          +H F  K   + +
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTH 169

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
           V +   L+D Y K G +A A +VF EM +++++TY A++ G +  G    A+  F+ M  
Sbjct: 170 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRR 229

Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGL 464
            G+     TF  IL+       +  G +  A    + R +  L  +  + ++D   +   
Sbjct: 230 AGIPATHFTFSSILTVAAGMAHLLLGHQVHAL---VLRSTSVLNVFVNNSLLDFYSKCDC 286

Query: 465 LEEAEQLIRSMP 476
           L++  +L   MP
Sbjct: 287 LDDMRRLFDEMP 298


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 273/474 (57%), Gaps = 33/474 (6%)

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREI 202
           N+  +N++I GFV  G+P  A++ +  M  E  V P   T   +V AC  +  + LG+ +
Sbjct: 101 NVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMV 160

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H +I + G    + +  AL+D Y K   L  A ++FD M  +   + T M+   A+ G +
Sbjct: 161 HCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDM 220

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYV-------------------------------QAK 291
           D ARK+F+++PE+    WN +I GY                                Q K
Sbjct: 221 DSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNK 280

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           + ++ALA++ EM+  GI PD VT     SAC+ +GAL+ G  IH ++  +  NL+V +G+
Sbjct: 281 QYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGS 340

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALVDMYAKCG++  +L +F ++ ++N   + A+I GLA+HG A  A+  F+ M    +MP
Sbjct: 341 ALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMP 400

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           + +TF+ ILSAC H GLVDEGR  F  M+  + + P ++HY CMVD+L +SG L EA +L
Sbjct: 401 NGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALEL 460

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           I+SM    + ++WGAL   C+LHGN  I E A  +L+ L+P +SG Y LL +MY +   W
Sbjct: 461 IKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDW 520

Query: 532 EEAGKVRKMMEERGVEKT-PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            E   +R MM+E+GVEK  PG S IE+ G +++F     SHP+ ++IY  L +L
Sbjct: 521 MEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTEL 574



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 192/431 (44%), Gaps = 102/431 (23%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
            ++NPN F +N  I+GF+  G    A+  Y  ML      P ++T+  L K C  +    
Sbjct: 96  QMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVE 155

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC--------------- 141
           LG  +  H+ K GF+  ++V  A++  +     L  A  VFDE C               
Sbjct: 156 LGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALA 215

Query: 142 ----------------VRNLVSWNSLINGFVRSG-----------FP------------- 161
                            RN  +WN++I+G+ R G            P             
Sbjct: 216 RVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITC 275

Query: 162 -------REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
                  ++A+ ++ +M+L  + PDEVTM  + SACA +  L LG+EIH Y+   GL L 
Sbjct: 276 YSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLD 335

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V + +AL+DMY KCG                                LD++  IF  L +
Sbjct: 336 VYIGSALVDMYAKCGS-------------------------------LDLSLLIFFKLTD 364

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +  WNA+I G      +++AL +F  M+   I P+ VT +  LSAC+  G +D+G   
Sbjct: 365 KNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEG--R 422

Query: 335 HRFIE-KENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
            RF+    ++++  ++     +VDM +K G + +AL++   M  E NS+ + A++ G  L
Sbjct: 423 SRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKL 482

Query: 391 HGK---ALDAI 398
           HG    A DA+
Sbjct: 483 HGNCEIAEDAV 493



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 5/212 (2%)

Query: 33  KILFNVQNPNS--FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
           ++LFN Q P     SW   I  + +  + ++A+ +Y +M R  G  PD  T   +   CA
Sbjct: 255 ELLFN-QMPTKDIISWTTMITCYSQNKQYQDALAIYSEM-RLNGIIPDEVTMSTVASACA 312

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            +G   LG EI  +V+  G ++D+Y+ +A++ ++  CG L L+  +F +   +NL  WN+
Sbjct: 313 HIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNA 372

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS-ES 209
           +I G    G+  +A+R+F  M+ E++ P+ VT I ++SAC     ++ GR     ++ + 
Sbjct: 373 VIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDY 432

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            +   +     ++DM  K G L  A E+  SM
Sbjct: 433 DIRPDIRHYGCMVDMLSKSGYLNEALELIKSM 464


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 306/566 (54%), Gaps = 33/566 (5%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           + A C + E  +L +   ++ +V      SW   + G++      + ++   +M R GG 
Sbjct: 175 MYAKCGVMEDASLMFDEIVVRDV-----VSWTALVIGYVHNDDSEKGLECLCEMRRIGGD 229

Query: 76  --RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
             + ++ T    F+ C +LG    G  + G  +K G      V ++++ ++  CG++  A
Sbjct: 230 GEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEA 289

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            N F +   +++ SW S+I    R GF  E + LF DMQ++ V PD + +  ++      
Sbjct: 290 HNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNS 349

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             +  G+  H  I      L   + NAL+ MY K G L  AE++FD +   +  S  TM+
Sbjct: 350 MMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMV 409

Query: 254 VGY------------------------AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            GY                         K G L IA K+F    ++ VV WN +I  Y  
Sbjct: 410 FGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCR-TQRDVVTWNTLISSYTH 468

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           +    EA+ LF EM +  + P++ T V  LSAC  L +L+ G  +H++I++  F LNV L
Sbjct: 469 SGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSL 528

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           GTALVDMYAKCG + ++ ++F+ M E++ +++  +I G  LHG A  A+  F +M    +
Sbjct: 529 GTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNV 588

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            P+ ITFL +LSAC H G VDEG++ F +M   + + P LKH++CM DLLGRSG L+EAE
Sbjct: 589 KPNAITFLSLLSACTHAGYVDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNLQEAE 647

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
            L++SMP+  D  VWG L  AC++H  + IG R A   +E DP++ G Y++L+NMY    
Sbjct: 648 DLVQSMPICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMG 707

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSI 555
            W+EA + R++M+ERG+ K  G S++
Sbjct: 708 KWDEAERARELMKERGIGKRAGWSAV 733



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 259/543 (47%), Gaps = 44/543 (8%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TG  ++ F  S+LI+  A    +     T +  +    ++F WN  I+     G   +A 
Sbjct: 58  TGNANNVFISSKLISLYA--SFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNYFKAF 115

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIH 122
           D Y QM R   T P+ FT P++   CA L     G  I G V K G F  +  V ++ ++
Sbjct: 116 DFYIQM-RYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVY 174

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV- 181
           ++  CG +  A  +FDE  VR++VSW +L+ G+V +    + +    +M+    + ++V 
Sbjct: 175 MYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVN 234

Query: 182 --TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T+ G   AC  L  +  GR +H    ++GL  +  + ++L+ MY KCG +E A   F 
Sbjct: 235 SRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFC 294

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG----GYVQAKRSKE 295
            +V+K V S T++I   A+FGF++    +F D+    V P   ++     G+  +   +E
Sbjct: 295 QVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVRE 354

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALD------DGI--------------WIH 335
             A    +       D       LS   + G L+      DG+              ++H
Sbjct: 355 GKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVH 414

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            +I K + + +V +  +L+DMY K GN++ A ++F    +R+ +T+  +I      G   
Sbjct: 415 CYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCR-TQRDVVTWNTLISSYTHSGHYA 473

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHY 452
           +AI+ F EMI   L P+  T + +LSACCH   +++G+   +Y  +    F L+  L   
Sbjct: 474 EAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGG--FELNVSLG-- 529

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           + +VD+  + G LE++ +L  SM    DV+ W  +     LHG+ +    +AM++ +   
Sbjct: 530 TALVDMYAKCGQLEQSRELFNSMK-EKDVISWNVMISGYGLHGDAN----SAMEVFQQME 584

Query: 513 QDS 515
           Q +
Sbjct: 585 QSN 587



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 158/332 (47%), Gaps = 29/332 (8%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           ++  G   ++++ + +I ++ S      +  VFD +  ++   WNS+I     +G   +A
Sbjct: 55  IITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNYFKA 114

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLTVPLANALMD 223
              +  M+ +   P++ T+  +V+ CA+L  L  G+ IH  +S+SGL      + ++ + 
Sbjct: 115 FDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVY 174

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY KCG +E A  +FD +V + VVS T +++GY           + +D  EK +      
Sbjct: 175 MYAKCGVMEDASLMFDEIVVRDVVSWTALVIGY-----------VHNDDSEKGL------ 217

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
                      E L     +   G K ++ T      AC  LGA+  G  +H    K   
Sbjct: 218 -----------ECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGL 266

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             + V+ ++L+ MY+KCGN+ +A   F ++ +++  ++T++IG  A  G   + ++ F +
Sbjct: 267 GCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWD 326

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           M    + PD I    IL    +  +V EG+ +
Sbjct: 327 MQVDDVYPDGIVVSCILLGFGNSMMVREGKAF 358


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 280/510 (54%), Gaps = 33/510 (6%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSC 127
           +++ G   PD   Y  L K C  LG    G  +  H++   F D  + + N +++++  C
Sbjct: 77  LIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC 136

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G L  A  +FDE   +++V+W +LI GF ++  PR+A+ LF  M     +P+  T+  ++
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLL 196

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            A      L+ G ++H +  + G   +V + +AL+DMY +CG                  
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG------------------ 238

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                         +D A+  FD +P K  V WNA+I G+ +    + AL L  +MQ   
Sbjct: 239 -------------HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN 285

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P   T    LSAC+ +GAL+ G W+H  + K    L   +G  L+DMYAK G+I  A 
Sbjct: 286 FQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAK 345

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF  + + + +++  ++ G A HG   + +  F +M+ +G+ P+EI+FL +L+AC H G
Sbjct: 346 RVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           L+DEG  YF  M   +++ P + HY   VDLLGR GLL+ AE+ IR MP+     VWGAL
Sbjct: 406 LLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGAL 464

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR+H N+ +G  AA +  ELDP DSG  +LL+N+Y  +  W +  KVRKMM+E GV+
Sbjct: 465 LGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVK 524

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           K P CS +E+   ++ F+  D++HP +++I
Sbjct: 525 KQPACSWVEIENAVHLFVANDETHPRIKEI 554



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 176/365 (48%), Gaps = 33/365 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   ++   +   +  +W   I GF +  + R+A+ L+ QMLR  G +P++FT   L K
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR-LGFQPNHFTLSSLLK 197

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
              S      G ++    LK G+   +YV +A++ ++  CG +  A   FD    ++ VS
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN+LI+G  R G    A+ L   MQ +  +P   T   ++SACA +  L  G+ +H ++ 
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMI 317

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SGL L   + N L+DMY K G ++ A+ +FD +V   VVS  TM+ G A+ G       
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL------ 371

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                     KE L  F +M   GI+P+ ++ +  L+ACS  G 
Sbjct: 372 -------------------------GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGL 406

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           LD+G++    ++K     +V      VD+  + G + +A +   EMP E  +  + A++G
Sbjct: 407 LDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLG 466

Query: 387 GLALH 391
              +H
Sbjct: 467 ACRMH 471



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ L  +   GG  L+  ALD I   S      L+PD   +  +L  C   G V++GR 
Sbjct: 57  DKDLLRKSQSDGGTGLY--ALDLIQRGS------LVPDYNLYSKLLKECTRLGKVEQGRI 108

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             A +     L   L   + +V++  + G L++A ++   MP   D+V W AL
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMP-TKDMVTWTAL 160



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 15  RLIAFCA------ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQ 68
           +LIAF         +++ ++D   ++   +  P+  SWN  + G  + G  +E +D ++Q
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           MLR  G  P+  ++  +   C+  GL   G   F  + K   + D+  +   + +    G
Sbjct: 382 MLR-IGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVG 440

Query: 129 DLGLACNVFDESCVRNLVS-WNSLINGFVRSGFPREAIRLFRDMQL 173
            L  A     E  +    + W +L+           A R+ ++M+L
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLG----------ACRMHKNMEL 476


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 204/609 (33%), Positives = 331/609 (54%), Gaps = 28/609 (4%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G  +H F  ++L+   A   + + +    +   +   N  SW   +R ++E G   EA 
Sbjct: 77  SGFNAHEFVTTKLLQMYA--RNCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAF 134

Query: 64  DLYKQMLRNG-GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV----DMYV-- 116
            L++Q+L  G   R D F +P++ K+C  L    LG ++ G  LK   D+    +M+   
Sbjct: 135 FLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHDGDMKSAFEMFSRF 194

Query: 117 -------HNAVIHVFVSCGDLGLACNVFD----ESCVRNLVSWNSLINGFVRSGFPREAI 165
                  +NA+I  +   G+L  A  +FD    E   ++ +SWNS+I+G+V      EA 
Sbjct: 195 SRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAY 254

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LFRD+  E +EPD  T+  +++ CA +  +  G+E H      GL     +  AL++MY
Sbjct: 255 SLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMY 314

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG----FLDIARKIFDDLPEKYVVPWN 281
            KC  + +A+  FD +  + + +   +I GYA+        ++ +K+  D  E  V  WN
Sbjct: 315 SKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWN 374

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            II GYV+ K+   A+ LF EMQ   ++PD  T    L+ACS+L  +  G  +H +  + 
Sbjct: 375 GIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRA 434

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             + +V +G ALVDMYAKCG++    +V++ +   N +++ A++   A+HG   + I+ F
Sbjct: 435 GHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALF 494

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M+   + PD +TFL +LS+C H G ++ G +  A M + + + P LKHY+CMVDLL R
Sbjct: 495 RRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVA-YNVMPSLKHYTCMVDLLSR 553

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L EA +LI+++P  AD V W AL   C +H  V +GE AA KL+EL+P + G YV+L
Sbjct: 554 AGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVML 613

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL--EQIYD 579
           AN+Y  +  W    + R++M++ G++K PGCS IE    ++ F+ +D  H     E  +D
Sbjct: 614 ANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVFVAKDIYHTSTSKEDSFD 673

Query: 580 CLVQLTRHF 588
             V+ T HF
Sbjct: 674 LSVKKT-HF 681



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 183/401 (45%), Gaps = 28/401 (6%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P + TY  +   C S     LG ++  H +K GF+   +V   ++ ++        AC+V
Sbjct: 49  PSSTTYASILDSCGS---PILGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHV 105

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE--RVEPDEVTMIGMVSACAQLE 194
           FD   +RNL SW +L+  ++  GF  EA  LF  +  E  RV  D      ++  C  L 
Sbjct: 106 FDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLC 165

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            + LGR++H      G+ L               G ++SA E+F     K+  S   MI 
Sbjct: 166 AVELGRQMH------GMALK------------HDGDMKSAFEMFSRFSRKSAASYNAMIA 207

Query: 255 GYAKFGFLDIARKIFDDLPEKYV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           GY + G L  A+++FD + ++ V    + WN++I GYV      EA +LF ++   GI+P
Sbjct: 208 GYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEP 267

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           D+ T    L+ C+ + ++  G   H          N ++G ALV+MY+KC +I  A   F
Sbjct: 268 DSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAF 327

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             + ER+  T+ A+I G A   +A        +M   G  P+  T+ GI++        D
Sbjct: 328 DGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYD 387

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
              + F +M  I  L P +     ++    R   ++  +Q+
Sbjct: 388 SAMQLFTEM-QIANLRPDIYTVGIILAACSRLATIQRGKQV 427


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 189/583 (32%), Positives = 313/583 (53%), Gaps = 36/583 (6%)

Query: 5   GLISHGFAPSRLI-AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           GL +H F  + L+ A+C   +   L    ++   + + ++ ++N  + G  + G   +A+
Sbjct: 165 GLDTHVFVCNTLLDAYC---KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+  M R  G    +FT+  +  V A +    LG+++   VL+    ++++V+N+++  
Sbjct: 222 QLFAAM-RRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDF 280

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L     +FDE   R+ VS+N +I  +  +      +RLFR+MQ    +   +  
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             M+S    L D+++G++IH  +   GL     L NAL+DMY KCG              
Sbjct: 341 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG-------------- 386

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                             LD A+  F +  EK  + W A+I GYVQ  + +EAL LF +M
Sbjct: 387 -----------------MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 429

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +  G++PD  T    + A S L  +  G  +H ++ +  +  +V  G+ LVDMYAKCG +
Sbjct: 430 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +AL+ F EMPERNS+++ A+I   A +G+A +AI  F  M+  G  PD +TFL +L+AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL DE  KYF  M   + +SP  +HY+C++D LGR G   + ++++  MP  AD ++
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 609

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W ++  +CR+HGN  +   AA KL  ++P D+  YV+L+N+Y  +  WE+A  V+K+M +
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           RGV K  G S +E+   +Y F   D + P +++I D L +L +
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYK 712



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/499 (25%), Positives = 215/499 (43%), Gaps = 59/499 (11%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
             A S S +L     +  +  + N+ +W + +R     G+  +A+ L++ ML   G  PD
Sbjct: 81  LSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML-GEGVIPD 139

Query: 79  NFTYPLLFKV--CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
             T   +  +  C    L           +K G D  ++V N ++  +   G L  A  V
Sbjct: 140 RVTVTTVLNLPGCTVPSLHPFA-------IKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           F E   ++ V++N+++ G  + G   +A++LF  M+   +     T   +++  A +  L
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
            LG ++H  +  S   L V + N+L+D Y KC  L+    +FD M               
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM--------------- 297

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
                           PE+  V +N II  Y   + +   L LF EMQ  G     +   
Sbjct: 298 ----------------PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             LS    L  +  G  IH  +         +LG AL+DMY+KCG +  A   F    E+
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEK 401

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           +++++TA+I G   +G+  +A+  FS+M   GL PD  TF  I+ A     ++  GR+  
Sbjct: 402 SAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 437 AQM------SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           + +      SS+F         S +VD+  + G L+EA +    MP   + + W A+  A
Sbjct: 462 SYLIRSGYKSSVFS-------GSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISA 513

Query: 491 CRLHGNVSIGERAAMKLLE 509
              +G      + A+K+ E
Sbjct: 514 YAHYGEA----KNAIKMFE 528



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 172/400 (43%), Gaps = 55/400 (13%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV----DMYVHNAVIHVFVSCGDLGLA 133
           D  TY L      +LGLR L      H  +  FD     +++  N ++  + S GDL  A
Sbjct: 40  DVLTYRL------NLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++F  S  RN  +W  ++     +G   +A+ LFR M  E V PD VT+  +       
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTV------- 146

Query: 194 EDLNLG----REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
             LNL       +H +  + GL   V + N L+D Y K G L +A  +F  M +K  V+ 
Sbjct: 147 --LNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY 204

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
             M++G +K G                                  +AL LF  M+  GI 
Sbjct: 205 NAMMMGCSKEGL-------------------------------HTQALQLFAAMRRAGIP 233

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
               T    L+  + +  L  G  +H  + +    LNV +  +L+D Y+KC  +    ++
Sbjct: 234 ATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 293

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F EMPER++++Y  II   A +  A   +  F EM  +G     + +  +LS       V
Sbjct: 294 FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
             G++  AQ+  +   S  L   + ++D+  + G+L+ A+
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAK 392



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 14/255 (5%)

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
           +  G L  A  +FD M +K + S   ++  Y+  G L  A+ +F   P +    W  ++ 
Sbjct: 54  LSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMR 113

Query: 286 GYVQAKRSKEALALFHEMQATGIKPD--AVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
            +  A R+ +AL+LF  M   G+ PD   VTTV  L  C+          +H F  K   
Sbjct: 114 AHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGL 166

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           + +V +   L+D Y K G +A A +VF EM +++++TY A++ G +  G    A+  F+ 
Sbjct: 167 DTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAA 226

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGR 461
           M   G+     TF  IL+       +  G +  A    + R +  L  +  + ++D   +
Sbjct: 227 MRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHAL---VLRSTSVLNVFVNNSLLDFYSK 283

Query: 462 SGLLEEAEQLIRSMP 476
              L++  +L   MP
Sbjct: 284 CDCLDDMRRLFDEMP 298


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/544 (33%), Positives = 302/544 (55%), Gaps = 33/544 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I  F + G   +A++L+ +M R+    P++ +  +    C+ L     G EI   
Sbjct: 174 SWNTVISSFYQRGDAEKALELFGRMERSD-FEPNSVSITVAISACSRLLCLERGKEIHRK 232

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            LK  F++D YV++A++ ++  C  L +A  VF +   ++LV+WNS+I G+V  G  +  
Sbjct: 233 YLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSC 292

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           + L   M +E   P + T+  ++ AC++  +L  G+ +H Y+  S +   + +  +L+D+
Sbjct: 293 VELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDL 352

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG+++ AE +                       FL   + +        V  WN +I
Sbjct: 353 YFKCGEVKLAETV-----------------------FLKTQKDV--------VESWNVMI 381

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GYV      +A+ ++ +M + G++PD VT    LS CSQL AL+ G  IH  I +    
Sbjct: 382 SGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLE 441

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            + +L +AL+DMY+KCGN+ +A ++F+ +P+++ +++T +I     HG+  +A+ +F EM
Sbjct: 442 TDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEM 501

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
              G+ PD +TFL +LSAC H GL+DEG KYF+QM S + +   ++ YSC++D+LGR+G 
Sbjct: 502 QKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGR 561

Query: 465 LEEAEQLIRSMPMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
           L EA  +++  P   D   +   LF AC LH +  +G   A  L+E  P D+  Y +L N
Sbjct: 562 LLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPDDASTYTVLFN 621

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           +Y     W+ A +VR  M+E G+ K PGCS IE+N  +  F   D+SHP+ E +Y+CL  
Sbjct: 622 LYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMNEKVCHFFAEDRSHPQAENVYECLAL 681

Query: 584 LTRH 587
           L+ H
Sbjct: 682 LSGH 685



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 230/471 (48%), Gaps = 36/471 (7%)

Query: 29  DYCT-KILFNVQNPNS--FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           D+C+ +++F   +  S  + WN  + G+ +     + + ++K++L      PD+FTYP +
Sbjct: 53  DHCSARLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNV 112

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K   +LG  FLG  I   V+K G   D+ V ++++ ++        +  VFDE   R++
Sbjct: 113 IKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDV 172

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
            SWN++I+ F + G   +A+ LF  M+    EP+ V++   +SAC++L  L  G+EIH  
Sbjct: 173 ASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRK 232

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
             +    L   + +AL+DMY +C  LE A E+F  M  K++V+                 
Sbjct: 233 YLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVA----------------- 275

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                         WN++I GYV    SK  + L + M   G +P   T    L ACS+ 
Sbjct: 276 --------------WNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRS 321

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
             L  G ++H ++ +   + ++ +  +L+D+Y KCG +  A  VF +  +    ++  +I
Sbjct: 322 RNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMI 381

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            G    G    A+  + +M+ VG+ PD +TF  +LS C     +++G++    +S   RL
Sbjct: 382 SGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISE-SRL 440

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
                  S ++D+  + G ++EA ++  S+P   DVV W  +  A   HG 
Sbjct: 441 ETDELLLSALLDMYSKCGNVKEASRIFNSIP-KKDVVSWTVMISAYGSHGQ 490



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 191/396 (48%), Gaps = 37/396 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+   ++   ++  +  +WN  IRG++  G  +  V+L  +M+   GTRP   T   +  
Sbjct: 258 LEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIE-GTRPSQTTLTSILM 316

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+       G  + G+V++   D D+Y++ ++I ++  CG++ LA  VF ++    + S
Sbjct: 317 ACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVES 376

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN +I+G+V  G   +A+ ++  M    V+PD VT   ++S C+QL  L  G++IH  IS
Sbjct: 377 WNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSIS 436

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           ES L     L +AL+DMY KCG ++ A  IF+S+  K VVS T MI  Y   G       
Sbjct: 437 ESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHG------- 489

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                   + +EAL  F EMQ  G+KPD VT +  LSAC   G 
Sbjct: 490 ------------------------QPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGL 525

Query: 328 LDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER--NSLTYTAI 384
           +D+G+ +  +   K     ++   + L+D+  + G + +A  +  + PE   N+   + +
Sbjct: 526 IDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTL 585

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
                LH   L  + Y    + V   PD+ +   +L
Sbjct: 586 FCACCLHRDHL--LGYTIAKLLVEKYPDDASTYTVL 619



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 193/404 (47%), Gaps = 44/404 (10%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS-WNSLINGFVRSG 159
           +   +L +G   D+ +  ++I+V+ +C D   A  VF+   +R+ V  WNSL++G+ ++ 
Sbjct: 25  VHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRSDVYIWNSLVSGYSKNS 84

Query: 160 FPREAIRLF-RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
              + +++F R +      PD  T   ++ A   L    LGR IH  + +SG    V +A
Sbjct: 85  MFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVA 144

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           ++L+ MY                               AKF   + + ++FD++PE+ V 
Sbjct: 145 SSLVGMY-------------------------------AKFNLFEDSVQVFDEMPERDVA 173

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN +I  + Q   +++AL LF  M+ +  +P++V+    +SACS+L  L+ G  IHR  
Sbjct: 174 SWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKY 233

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K+ F L+  + +ALVDMY +C  +  A +VF +M  ++ + + ++I G    G +   +
Sbjct: 234 LKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCV 293

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC-MVD 457
              + MI  G  P + T   IL AC     +  G+  F     I  +     + +C ++D
Sbjct: 294 ELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGK--FVHGYVIRSVVDADIYINCSLID 351

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVV-VWGALFFACRLHGNVSIG 500
           L  + G ++ AE +   +    DVV  W  +     + G VS+G
Sbjct: 352 LYFKCGEVKLAETVF--LKTQKDVVESWNVM-----ISGYVSVG 388



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 24/221 (10%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  C+   +L     +H+ I       +VVL  +L+++Y  C +   A  VF  +  R+ 
Sbjct: 10  LRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRSD 69

Query: 379 L-TYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEITFLGILSACCHGGLVDEGRKYF 436
           +  + +++ G + +    D +  F  ++   + +PD  T+  ++ A  +G L   GR++ 
Sbjct: 70  VYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKA--YGAL---GREFL 124

Query: 437 AQMSSIFRLSPKLKHY------SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
            +M  I  +  K  H       S +V +  +  L E++ Q+   MP   DV  W  +  +
Sbjct: 125 GRM--IHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMP-ERDVASWNTVISS 181

Query: 491 CRLHGNVSIGERA-----AMKLLELDPQDSGIYVLLANMYR 526
               G+    E+A      M+  + +P    I V ++   R
Sbjct: 182 FYQRGD---AEKALELFGRMERSDFEPNSVSITVAISACSR 219



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  N+   ++I  ++   +  SW V I  +   G+ REA+  + +M +  G +PD  T+
Sbjct: 455 SKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEM-QKFGVKPDGVTF 513

Query: 83  PLLFKVCASLGLRFLGYEIFGHVL-KLGFDVDMYVHNAVIHVFVSCGDL 130
             +   C   GL   G + F  +  K G +  +  ++ +I +    G L
Sbjct: 514 LAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRL 562


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 315/581 (54%), Gaps = 35/581 (6%)

Query: 7   ISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I + F+  R++    +   +++ NL    +    + + N  + N  + G + TG   EA+
Sbjct: 279 IKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAM 338

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++ M R+G    D  +   +F  CA +   F G ++    +K GFDVD+ V NA++ +
Sbjct: 339 QLFQFMTRSG-VGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDL 397

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L  A  VF E   R+ VSWN++I    ++    + I    +M    +EPD+ T 
Sbjct: 398 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTY 457

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA L+ L  G  +H    +SGL L   +++ ++DMY KCG +  A+        
Sbjct: 458 GSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQ-------- 509

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                                  K+ D +  + +V WN+II G+   K+S+EA   F EM
Sbjct: 510 -----------------------KLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEM 546

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              G+KPD  T    L  C+ L  ++ G  IH  I K+    +  + + LVDMYAKCGN+
Sbjct: 547 LDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNM 606

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             +L +F +  + + +++ A+I G ALHG+ L+A+  F  M    ++P+  TF+ +L AC
Sbjct: 607 PDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRAC 666

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL+D+G +YF  M+S ++L P+L+H++CMVD+LGRS   +EA + IRSMP+ AD VV
Sbjct: 667 SHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVV 726

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L   C++  +V + E AA  +L LDP D+ +Y+LL+N+Y  S  W +  + R++M +
Sbjct: 727 WKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQ 786

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             + K PGCS IEV   ++ F+V DK HP  +++Y+ L  L
Sbjct: 787 GRLRKEPGCSWIEVQSEMHGFLVGDKVHPRSKEVYEMLNSL 827



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 234/495 (47%), Gaps = 40/495 (8%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL +   A S L+      + ++LD   +    +   NS SW  AI G ++  +    +
Sbjct: 180 TGLETDVRAGSALVDM--YGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGM 237

Query: 64  DLYKQMLR--NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           +L+ QM R   G ++P    Y   F+ CA++       ++  H +K  F  D  V  A++
Sbjct: 238 ELFVQMQRLGLGVSQP---AYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIV 294

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            V+   G+L  A   F      N+ + N+++ G VR+G   EA++LF+ M    V  D +
Sbjct: 295 DVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVI 354

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           ++ G+ SACA+++    G ++H    +SG  + V + NA++D+Y KC  L  A  +F  M
Sbjct: 355 SLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEM 414

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             +  VS                               WNAII    Q +  ++ +A  +
Sbjct: 415 EQRDSVS-------------------------------WNAIIAALEQNECYEDTIAHLN 443

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           EM  +G++PD  T    L AC+ L +L+ G+ +H    K    L+  + + +VDMY KCG
Sbjct: 444 EMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCG 503

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            I +A ++   +  +  +++ +II G +L  ++ +A  +FSEM+ +G+ PD  T+  +L 
Sbjct: 504 AITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLD 563

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
            C +   ++ G++   Q+     L  +    S +VD+  + G + ++  L+       D 
Sbjct: 564 TCANLATIELGKQIHGQIIKQEMLGDEYIS-STLVDMYAKCGNMPDS-LLMFEKARKLDF 621

Query: 482 VVWGALFFACRLHGN 496
           V W A+     LHG 
Sbjct: 622 VSWNAMICGYALHGQ 636



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 219/495 (44%), Gaps = 44/495 (8%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A   + + D    +   + +P+  SWN  I G+ + G  R +V L  +M R  G   D  
Sbjct: 94  AYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRR-GVALDRT 152

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T  +L K C  L    LG +I    +K G + D+   +A++ ++  C  L  A   F   
Sbjct: 153 TLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGM 212

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             RN VSW + I G V++      + LF  MQ   +   +        +CA +  L+  R
Sbjct: 213 GERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTAR 272

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H +  ++  +    +  A++D+Y K G L  A   F  + +  V +C  M+VG  + G
Sbjct: 273 QLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTG 332

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                                             EA+ LF  M  +G+  D ++     S
Sbjct: 333 L-------------------------------GAEAMQLFQFMTRSGVGFDVISLSGVFS 361

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC+++     G+ +H    K  F+++V +  A++D+Y KC  + +A  VF EM +R+S++
Sbjct: 362 ACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVS 421

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-----HGGLVDEGRKY 435
           + AII  L  +    D I++ +EM+  G+ PD+ T+  +L AC        GLV  G+  
Sbjct: 422 WNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAI 481

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            + +     +S      S +VD+  + G + EA++L   +    ++V W ++     L  
Sbjct: 482 KSGLGLDAFVS------STVVDMYCKCGAITEAQKLHDRIG-GQELVSWNSIISGFSLTK 534

Query: 496 NVSIGERAAMKLLEL 510
                +R   ++L++
Sbjct: 535 QSEEAQRFFSEMLDM 549



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 189/450 (42%), Gaps = 80/450 (17%)

Query: 81  TYPLLFKVCASLGLRFL--GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           T+  L+++CAS G   L  G      +L  GF    +V N ++ ++  CG    A  VFD
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 139 ESCVRN-------------------------------LVSWNSLINGFVRSGFPREAIRL 167
               R+                               +VSWN+LI+G+ + G  R ++ L
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL 138

Query: 168 FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
             +M    V  D  T+  ++ +C  L+DL LG +IH    ++GL   V   +AL+DMY K
Sbjct: 139 SMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK 198

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
           C  L                               D A + F  + E+  V W A I G 
Sbjct: 199 CRSL-------------------------------DDALRFFHGMGERNSVSWGAAIAGC 227

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
           VQ ++    + LF +MQ  G+            +C+ +  L     +H    K  F+ + 
Sbjct: 228 VQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDR 287

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           V+GTA+VD+YAK GN+  A + F  +P  N  T  A++ GL   G   +A+  F  M   
Sbjct: 288 VVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRS 347

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMS-------SIFRLSPKLKHYSCMVDLLG 460
           G+  D I+  G+ SAC       E + YF  +        S F +   +++   ++DL G
Sbjct: 348 GVGFDVISLSGVFSACA------EVKGYFQGLQVHCLAVKSGFDVDVCVRN--AILDLYG 399

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           +   L EA  + + M    D V W A+  A
Sbjct: 400 KCKALVEAYLVFQEMEQ-RDSVSWNAIIAA 428


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 311/572 (54%), Gaps = 37/572 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +   I GF+       A+ ++++M+ + G RP+  T+  + K C   G   L   I G  
Sbjct: 216 FTATISGFVRNELHHNALGVFRKMV-SCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSA 274

Query: 106 LKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG----- 159
           +K  F +  + V N++I +++  GD   A  VFDE  V+++VSW +L++ +  SG     
Sbjct: 275 IKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGA 334

Query: 160 ------FPR--------------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
                  P                     EA++L+  M  +   P+      ++SACA L
Sbjct: 335 RRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATL 394

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           EDL  G  IH    + G +  V ++++L+DMY KC K   A+ IFD++  K +V   ++ 
Sbjct: 395 EDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLA 454

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY+  G +  A  +F  +P + +  WN II GY Q ++  +AL  F+ M A+G  P  +
Sbjct: 455 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEI 514

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L AC+ L +L  G   H    K     ++ +GTAL DMYAK G++  + ++F++M
Sbjct: 515 TFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQM 574

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           PERN +T+TA+I GLA +G A ++I    +M+  G+ P+E TFL +L AC HGGLV++  
Sbjct: 575 PERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAI 634

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            YF +M + + +SPK KHY+CMVD+L R+G L EAE L+   P  ++   W AL  AC  
Sbjct: 635 HYFEKMQA-WGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNT 693

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           + N  IGERAA +L EL   ++  YVLL+NMY     W++A ++R +M+   ++K  GCS
Sbjct: 694 YKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCS 753

Query: 554 SIEVNGLLYEFIVRDKSHP---ELEQIYDCLV 582
            ++V G  + F   +  HP   E+ +I D L+
Sbjct: 754 WVQVRGQYHAFFSWEAKHPLSMEINEILDLLL 785



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 218/489 (44%), Gaps = 67/489 (13%)

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A+ L+   +R+G    D      L    A+          FG  +  G     + ++ ++
Sbjct: 101 ALSLHAHAVRSG-VAADTSVASHLLTTYAAFARAAECDRAFGDCVAAG-AASPFTYDFMV 158

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSL------------------------------ 151
           H  V  GD+  A  +FD    RN+VS+ ++                              
Sbjct: 159 HEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTA 218

Query: 152 -INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISES 209
            I+GFVR+     A+ +FR M    V P+ +T + M+ AC    +  L   I    I  +
Sbjct: 219 TISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSN 278

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
               ++ + N+L+ +Y++ G   +A ++FD M  K VVS T ++  Y++ G LD AR++ 
Sbjct: 279 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL 338

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D +PE+  V W  +I  + Q   + EA+ L+ +M A G +P+       LSAC+ L  L 
Sbjct: 339 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLR 398

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKC----------------------------- 360
            G  IH    K   + NV + ++L+DMY KC                             
Sbjct: 399 GGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYS 458

Query: 361 --GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
             G + +A+ +F +MP RN  ++  II G A + + +DA+  F+ M+  G +P EITF  
Sbjct: 459 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 518

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
           +L AC +   +  G+   A+   +  +   +   + + D+  +SG L+ ++++   MP  
Sbjct: 519 VLLACANLCSLVTGKMAHAKTIKL-GMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER 577

Query: 479 ADVVVWGAL 487
            D V W A+
Sbjct: 578 ND-VTWTAM 585



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 166/386 (43%), Gaps = 63/386 (16%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           SES +LD   ++L  +   N  SW   I    + G   EAV LY QML +G  RP+   +
Sbjct: 326 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADG-CRPNISCF 384

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA+L     G  I    LK+G   +++V +++I ++  C     A  +FD    
Sbjct: 385 SSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPE 444

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE------------------------- 177
           +N+V WNSL +G+  +G   EA+ LF+ M    +                          
Sbjct: 445 KNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAM 504

Query: 178 ------PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P E+T   ++ ACA L  L  G+  H    + G+  ++ +  AL DMY K G L
Sbjct: 505 LASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDL 564

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           +S++ +F  M  +  V+ T MI G A+ GF                              
Sbjct: 565 QSSKRMFYQMPERNDVTWTAMIQGLAENGF------------------------------ 594

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
            ++E++ L  +M ATG+ P+  T +  L ACS  G ++  I     ++    +      T
Sbjct: 595 -AEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYT 653

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERN 377
            +VD+ A+ G + +A  +  + P ++
Sbjct: 654 CMVDVLARAGRLIEAEALLMKTPSKS 679



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 9/276 (3%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SWN  I G+ +  +  +A+  +  ML +G   P   T+  +   CA+L     G   
Sbjct: 477 NLASWNTIISGYAQNRQFVDALRSFNAMLASGQV-PGEITFSSVLLACANLCSLVTGKMA 535

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               +KLG +  +++  A+  ++   GDL  +  +F +   RN V+W ++I G   +GF 
Sbjct: 536 HAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFA 595

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY--ISESGLTLTVPLAN 219
            E+I L  DM    + P+E T + ++ AC+    +   + IH++  +   G++       
Sbjct: 596 EESILLLEDMMATGMTPNEHTFLALLFACSHGGLVE--QAIHYFEKMQAWGISPKEKHYT 653

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARKIFDDLPEK 275
            ++D+  + G+L  AE +     +K+  +    ++     Y      + A K   +L + 
Sbjct: 654 CMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKD 713

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
               +  +   Y    R K+A  +   M+ T +K D
Sbjct: 714 NTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKD 749



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 36/169 (21%)

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY------------ 400
           +V  + K G+IA A  +F  MPERN ++YT ++  L   G+  +A+              
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 216

Query: 401 -------------------FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF--AQM 439
                              F +M+  G+ P+ ITF+ ++ AC   G           A  
Sbjct: 217 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 276

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           S+ F  S ++++   ++ L  R G    A ++   M +  DVV W AL 
Sbjct: 277 SNFFESSIEVQN--SLITLYLRMGDAAAARKVFDEMDV-KDVVSWTALL 322


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 301/555 (54%), Gaps = 32/555 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   NS SW   I G+       EA+ L++ ++R      + F +  +       
Sbjct: 164 KVFDTMPERNSVSWATMISGYASQKLAAEALGLFR-LMRREEEGENEFVFTSVLSALTLP 222

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
            L   G +I    +K G    + V NA++ ++  CG L  A   F+ S  +N ++W+++I
Sbjct: 223 ELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMI 282

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+ +SG   +A++LF  M L  + P E T +G+++AC+ L     G+++H Y+ + G  
Sbjct: 283 TGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFE 342

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + +  AL+DMY KC           S+V+                     ARK FD L
Sbjct: 343 SQIYVMTALVDMYAKC----------SSIVD---------------------ARKGFDYL 371

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            E  +V W ++IGGYVQ   +++AL+L+  M+  GI P+ +T    L ACS L AL+ G 
Sbjct: 372 QEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGK 431

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            IH    K  F L V +G+AL  MYAKCG +     VF  MP R+ +++ A+I GL+ +G
Sbjct: 432 QIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNG 491

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
              +A+  F EM   G  PD +TF+ ILSAC H GLV+ G  YF  M   F + P+++HY
Sbjct: 492 CGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHY 551

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
           +CMVD+L R+G L+EA +   S  +   + +W  +  ACR + N  +G  A  KL+EL  
Sbjct: 552 ACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGS 611

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572
           Q+S  YVLL+++Y     WE+  +VR+MM+ RGV K PGCS IE+   ++ F+V+D+ HP
Sbjct: 612 QESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHP 671

Query: 573 ELEQIYDCLVQLTRH 587
           ++  I+  L QL++ 
Sbjct: 672 QIGDIHVELRQLSKQ 686



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 233/466 (50%), Gaps = 37/466 (7%)

Query: 33  KILFN-VQNPNSFSWNVAIRGFLETGKM--REAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           K +F  +QN +  SWN  I G+ + G       ++L+++M R   T P+  T+  +F   
Sbjct: 60  KFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM-RAENTAPNAHTFAGVFTAA 118

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           ++L     G       +K+    D++V +++++++   G    A  VFD    RN VSW 
Sbjct: 119 STLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWA 178

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           ++I+G+       EA+ LFR M+ E    +E     ++SA    E +N G++IH    ++
Sbjct: 179 TMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKN 238

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL   V + NAL+ MY KCG L+ A + F++  +K  ++ + MI GYA+ G         
Sbjct: 239 GLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSG--------- 289

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                  S +AL LF  M  +GI+P   T V  ++ACS LGA  
Sbjct: 290 ----------------------DSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAW 327

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
           +G  +H ++ K  F   + + TALVDMYAKC +I  A + F  + E + + +T++IGG  
Sbjct: 328 EGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYV 387

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            +G+  DA+S +  M   G++P+E+T   +L AC     +++G++  A+ +  +    ++
Sbjct: 388 QNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHAR-TVKYGFGLEV 446

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
              S +  +  + G L++   + R MP A DV+ W A+      +G
Sbjct: 447 PIGSALSTMYAKCGCLKDGTLVFRRMP-ARDVISWNAMISGLSQNG 491



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 180/364 (49%), Gaps = 38/364 (10%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDL 65
           ++S G A   + A C      +LD   +      + NS +W+  I G+ ++G   +A+ L
Sbjct: 243 IVSVGNALVTMYAKCG-----SLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKL 297

Query: 66  YKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125
           +  M    G RP  FT+  +   C+ LG  + G ++  ++LKLGF+  +YV  A++ ++ 
Sbjct: 298 FSSM-HLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYA 356

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
            C  +  A   FD     ++V W S+I G+V++G   +A+ L+  M++E + P+E+TM  
Sbjct: 357 KCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMAS 416

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC+ L  L  G++IH    + G  L VP+ +AL  MY KCG L+    +F  M  + 
Sbjct: 417 VLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARD 476

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           V+S   MI G ++ G                                 KEAL LF EMQ 
Sbjct: 477 VISWNAMISGLSQNGC-------------------------------GKEALELFEEMQL 505

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIA 364
            G KPD VT V+ LSACS +G ++ G    R +  E   +  V     +VD+ ++ G + 
Sbjct: 506 EGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLK 565

Query: 365 KALQ 368
           +A++
Sbjct: 566 EAIE 569



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 34/241 (14%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
           L  G+ +H  I +S  +  V +AN+L+++Y KC +L  A+ +F+ + NK VVS       
Sbjct: 22  LQKGKALHAQIIKSSSS-CVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVS------- 73

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ--AKRSKEALALFHEMQATGIKPDAV 313
                                   WN II GY Q     S   + LF  M+A    P+A 
Sbjct: 74  ------------------------WNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAH 109

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T     +A S L     G   H    K +   +V +G++L++MY K G   +A +VF  M
Sbjct: 110 TFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTM 169

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           PERNS+++  +I G A    A +A+  F  M       +E  F  +LSA     LV+ G+
Sbjct: 170 PERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGK 229

Query: 434 K 434
           +
Sbjct: 230 Q 230


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 205/591 (34%), Positives = 320/591 (54%), Gaps = 46/591 (7%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAV 63
           GL  + F  ++LI   AI +     Y ++++F+ +Q+ N F WN  I G ++     EA 
Sbjct: 53  GLSQNSFLATKLIFAYAICQHP---YHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAF 109

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L+ QM  +    PD+FT   L KV + LG  F G  I G  ++ GF  D  V N+++ +
Sbjct: 110 QLFNQMC-SSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSM 168

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG---FPREAIRLFRDMQLERVEPDE 180
           +  CG+   +  VFDE  +RN  SWN LI G+  SG   F  E     + MQ++ V PD 
Sbjct: 169 YCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDA 228

Query: 181 VTMIGMVSAC-AQLEDLNLGREIHWYISES----GLTLTVPLANALMDMYVKCGKLESAE 235
            T+  ++  C   +   + GRE+H YI ++    GL   V L   L+DMY          
Sbjct: 229 YTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY---------- 278

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
               S  NK VV                  R++FD +  + V  W A+I GYV+   S E
Sbjct: 279 ----SRSNKVVV-----------------GRRVFDRMKCRNVFSWTAMINGYVENGDSDE 317

Query: 296 ALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           AL+LF +MQ   G++P+ V+ V  L ACS    L  G  IH F  ++  N  V L  AL+
Sbjct: 318 ALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 377

Query: 355 DMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           DMY+KCG++  A +VF +    +++++++++I G  LHGK  +AI  + +M+  G+ PD 
Sbjct: 378 DMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDM 437

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           IT +GILSAC   GLV+EG   ++ + + + + P L+  +C+VD+LGR+G L+ A   I+
Sbjct: 438 ITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIK 497

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           ++P+     VWGAL     +HG++ + E A   L++L+P++   YV ++N+Y  S  W+ 
Sbjct: 498 AIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDA 557

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             +VR+MM+++ + K PGCS I +N   + F V DK+HP    IY+ L  L
Sbjct: 558 VAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHPSSTSIYNMLDDL 608


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 176/510 (34%), Positives = 281/510 (55%), Gaps = 33/510 (6%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF-DVDMYVHNAVIHVFVSC 127
           +++ G   PD   Y  L K C  LG    G  +  H++   F D  + + N +++++  C
Sbjct: 77  LIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC 136

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G L  A  +FDE   +++V+W +LI GF ++  PR+A+ LF  M    ++P+  T+  ++
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLL 196

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            A      L+ G ++H +  + G   +V + +AL+DMY +CG +                
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHM---------------- 240

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                          D A+  FD +P K  V WNA+I G+ +    + AL L  +MQ   
Sbjct: 241 ---------------DAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN 285

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            +P   T     SAC+ +GAL+ G W+H  + K    L   +G  L+DMYAK G+I  A 
Sbjct: 286 FQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAK 345

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +VF  + + + +++  ++ G A HG   + +  F +M+ +G+ P+EI+FL +L+AC H G
Sbjct: 346 RVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           L+DEG  YF  M   +++ P + HY   VDLLGR GLL+ AE+ IR MP+     VWGAL
Sbjct: 406 LLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGAL 464

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR+H N+ +G  AA +  ELDP DSG  +LL+N+Y  +  W +  KVRKMM+E GV+
Sbjct: 465 LGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVK 524

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           K P CS +E+   ++ F+  D++HP++++I
Sbjct: 525 KQPACSWVEIENAVHLFVANDETHPQIKEI 554



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 175/365 (47%), Gaps = 33/365 (9%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   ++   +   +  +W   I GF +  + R+A+ L+ QMLR G  +P++FT   L K
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-LQPNHFTLSSLLK 197

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
              S      G ++    LK G+   +YV +A++ ++  CG +  A   FD    ++ VS
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN+LI+G  R G    A+ L   MQ +  +P   T   + SACA +  L  G+ +H ++ 
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMI 317

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +SGL L   + N L+DMY K G ++ A+ +FD +V   VVS  TM+ G A+ G       
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL------ 371

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                     KE L  F +M   GI+P+ ++ +  L+ACS  G 
Sbjct: 372 -------------------------GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGL 406

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIG 386
           LD+G++    ++K     +V      VD+  + G + +A +   EMP E  +  + A++G
Sbjct: 407 LDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLG 466

Query: 387 GLALH 391
              +H
Sbjct: 467 ACRMH 471



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 15  RLIAFCA------ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQ 68
           +LIAF         +++ ++D   ++   +  P+  SWN  + G  + G  +E +D ++Q
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           MLR  G  P+  ++  +   C+  GL   G   F  + K   + D+  +   + +    G
Sbjct: 382 MLRI-GIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVG 440

Query: 129 DLGLACNVFDESCVRNLVS-WNSLINGFVRSGFPREAIRLFRDMQL 173
            L  A     E  +    + W +L+           A R+ ++M+L
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLG----------ACRMHKNMEL 476



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +++ L  +   GG  L+  ALD I   S      L+PD   +  +L  C   G V++GR 
Sbjct: 57  DKDLLRKSQSDGGTGLY--ALDLIQRGS------LVPDYNLYSKLLKECTRLGKVEQGRI 108

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             A +     L   L   + +V++  + G L++A ++   MP   D+V W AL
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMP-TKDMVTWTAL 160


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 287/513 (55%), Gaps = 34/513 (6%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G   DN       + C++ G     Y +F H     F  + Y+HN +I           A
Sbjct: 42  GLNRDNLNVAKFIEACSNAGHLRYAYSVFTH---QPFP-NTYLHNTMIR----------A 87

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++ DE    ++                  AI ++R       +PD  T   ++    ++
Sbjct: 88  LSLVDERNAHSI------------------AITVYRKFWAFCAKPDTFTFPFVLKIVVRV 129

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            D+  GR++H      G   +V +   L+ MY  CG L  A ++FD M  + V     ++
Sbjct: 130 SDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALL 189

Query: 254 VGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
            GY K G +D AR + + +P   +  V W  +I GY ++ R+ EA+ +F  M    + PD
Sbjct: 190 AGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPD 249

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            VT +  LSAC+ LG+L+ G  I  +++    N  V L  A++DMYAK GNI KAL+VF 
Sbjct: 250 EVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFE 309

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            + ERN +T+T II GLA HG   +A+  F  M+  G+ P+++TF+ ILSAC H G VD 
Sbjct: 310 SVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDL 369

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G ++F  M S + ++P ++HY CM+DLLGR+G L EAE++I+SMP  ++  +WG+L  A 
Sbjct: 370 GNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAAS 429

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
            +H ++ +GERA  +L++L+P +SG Y+LLAN+Y +   W+E+  +RKMM+  GV+K  G
Sbjct: 430 NVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAG 489

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            SSIEV   +Y+FI  D SHP++E+I++ L ++
Sbjct: 490 ESSIEVENRVYKFISGDLSHPQVEKIHELLQEM 522



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 108/201 (53%), Gaps = 2/201 (0%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SW   I G+  +G+  EA++++++ML      PD  T   +   CA LG   LG  I
Sbjct: 214 NAVSWTCVISGYARSGRASEAIEVFQRMLME-NVDPDEVTLLAVLSACADLGSLELGERI 272

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             +V   G +  + ++NAVI ++   G++  A  VF+    RN+V+W ++I G    G  
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHG 332

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REIHWYISESGLTLTVPLANA 220
            EA+ +F  M    V+P++VT I ++SAC+ +  ++LG R  +   S+ G+   +     
Sbjct: 333 AEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGC 392

Query: 221 LMDMYVKCGKLESAEEIFDSM 241
           ++D+  + GKL  AEE+  SM
Sbjct: 393 MIDLLGRAGKLREAEEVIKSM 413


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 185/479 (38%), Positives = 285/479 (59%), Gaps = 41/479 (8%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+++T+PLL KVC  +G    G +I   +LK GF++D++V N++IH++  CG +G A  +
Sbjct: 8   PNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAM 67

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           F+   + +LV+WNS+I+G+V++G    A  LF +M  ER                   DL
Sbjct: 68  FEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMP-ER-------------------DL 107

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
                  W              N+++  YV  G + +AE++F+ M  + +VS   MI GY
Sbjct: 108 -----FSW--------------NSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGY 148

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           A+   ++IA ++F+ +P + VV WN ++  YV+ K   E L +F +M    + P+  T V
Sbjct: 149 AQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLV 207

Query: 317 HCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
             L+AC+ LG LD G WIH +I+       +V+L TAL+ MYAKCG +  A  VF +M  
Sbjct: 208 SVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSN 267

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+ +++ ++I G  +HG+A  A+  F +M   G MP++ TF+ +LSAC H G++ EG  Y
Sbjct: 268 RSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWY 327

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M   +++ PK++HY CMVDLLGR+GL+++ E+LIR MPM     +WGAL  ACR H 
Sbjct: 328 FDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHS 387

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           N  + E  A +L+EL+P+D G Y+LL+N+Y     W++   VRKMM+ERG+ KT G SS
Sbjct: 388 NSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGLSS 446



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 150/324 (46%), Gaps = 47/324 (14%)

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V P+  T   +V  C ++  +  G +IH  I + G  L + + N+L+ MY  CG++  A 
Sbjct: 6   VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDAR 65

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +F+      +V+  +MI GY K G +  AR++F+++PE+ +  WN++I GYV       
Sbjct: 66  AMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTA 125

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           A  LF++M                                          ++V    ++D
Sbjct: 126 AEDLFNKMPFR---------------------------------------DIVSWNCMID 146

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD---AISYFSEMIGVGLMPD 412
            YA+  N+  A ++F+ MP RN +++  +   LAL+ +  D    +  F +M+G   MP+
Sbjct: 147 GYAQVQNMEIACELFNWMPYRNVVSWNIM---LALYVRIKDYDECLRMFDKMMG-ETMPN 202

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
           E T + +L+AC H G +D G+   + + +   + P +   + ++ +  + G ++ A  + 
Sbjct: 203 EATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVF 262

Query: 473 RSMPMAADVVVWGALFFACRLHGN 496
             M   + VV W ++     +HG 
Sbjct: 263 DKMSNRS-VVSWNSMIMGYGMHGQ 285


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 278/483 (57%), Gaps = 35/483 (7%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I   +++ G   D ++   ++     C  +  A  +F  +   N+  + +LI+GFV SG 
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             +AI+L+  M  + + PD   M  ++ AC     L  GRE+H    + GL+    +   
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 170

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE----KY 276
           +M++Y KCG+L  A                               R++F+++PE    K 
Sbjct: 171 IMELYGKCGELGDA-------------------------------RRVFEEMPEDVVAKD 199

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V W A+I G+V+ +    AL  F  MQ   ++P+  T V  LSACSQLGAL+ G W+H 
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 259

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           ++ K    LN+ +G AL++MY++CG+I +A  VF EM +R+ +TY  +I GL+++GK+  
Sbjct: 260 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 319

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           AI  F  MIG  L P  +TF+G+L+AC HGGLVD G K F  M+  + + P+++HY CMV
Sbjct: 320 AIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMV 379

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
           DLLGR G LEEA  LIR+M M  D ++ G L  AC++H N+ +GE+ A  L +    DSG
Sbjct: 380 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG 439

Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
            YVLL+++Y  S  W+EA +VR  M+E G++K PGCSSIEVN  ++EF++ D  HP  E+
Sbjct: 440 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKER 499

Query: 577 IYD 579
           IY+
Sbjct: 500 IYE 502



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 185/377 (49%), Gaps = 42/377 (11%)

Query: 6   LISHGFAPSRLIAF---CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           LI +G +    + F    + S+   +DY ++I     NPN + +   I GF+ +G   +A
Sbjct: 55  LIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDA 114

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           + LY +ML +    PDN+    + K C S L LR  G E+    LKLG   +  V   ++
Sbjct: 115 IQLYSRMLHDS-ILPDNYLMASILKACGSQLALR-EGREVHSRALKLGLSSNRLVRLRIM 172

Query: 122 HVFVSCGDLGLACNVFDES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
            ++  CG+LG A  VF+E       ++ V W ++I+GFVR+     A+  FR MQ E V 
Sbjct: 173 ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR 232

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+E T++ ++SAC+QL  L +GR +H Y+ +  + L + + NAL++MY +CG ++ A+ +
Sbjct: 233 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 292

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M ++ V++  TMI G +  G                               +S++A+
Sbjct: 293 FDEMKDRDVITYNTMISGLSMNG-------------------------------KSRQAI 321

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDM 356
            LF  M    ++P  VT V  L+ACS  G +D G  I H           +     +VD+
Sbjct: 322 ELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDL 381

Query: 357 YAKCGNIAKALQVFHEM 373
             + G + +A  +   M
Sbjct: 382 LGRVGRLEEAYDLIRTM 398



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 141/329 (42%), Gaps = 41/329 (12%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++S   + + +N    IH  +  +G +    +   L+    KC  ++ A  IF    N  
Sbjct: 35  IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHN-- 92

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
                                      P  Y+  + A+I G+V +    +A+ L+  M  
Sbjct: 93  ---------------------------PNVYL--YTALIDGFVSSGNYFDAIQLYSRMLH 123

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
             I PD       L AC    AL +G  +H    K   + N ++   ++++Y KCG +  
Sbjct: 124 DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 183

Query: 366 ALQVFHEMPE----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           A +VF EMPE    ++++ +TA+I G   + +   A+  F  M G  + P+E T + +LS
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC   G ++ GR   + M   F +   L   + ++++  R G ++EA+ +   M    DV
Sbjct: 244 ACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDV 301

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLEL 510
           + +  +     ++G      R A++L  +
Sbjct: 302 ITYNTMISGLSMNGK----SRQAIELFRV 326


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 314/581 (54%), Gaps = 35/581 (6%)

Query: 7   ISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I + F+  R++    +   +++ +L    +  F++ N    + N  + G + TG   EA+
Sbjct: 264 IKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEAL 323

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++ M R+G    D  +   +F  CA +     G ++    +K GFDVD+ V NA++ +
Sbjct: 324 QLFQFMTRSG-IGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDL 382

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L  A  VF E   R+ VSWN++I    ++    + I    +M    +EPD+ T 
Sbjct: 383 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTY 442

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA L+ L  G  +H    +SGL L   +++ ++DMY KCG +  A         
Sbjct: 443 GSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEA--------- 493

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                                 +K+ D +  + +V WN+II G+   K+S+EA   F EM
Sbjct: 494 ----------------------QKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEM 531

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              G+KPD  T    L  C+ L  ++ G  IH  I K+    +  + + LVDMYAKCGN+
Sbjct: 532 LDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNM 591

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             +L +F +  + + +++ A+I G ALHG+  +A+  F  M    ++P+  TF+ +L AC
Sbjct: 592 PDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRAC 651

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL+D+G +YF  M+S ++L P+L+H++CMVD+LGRS   +EA + IRSMP+ AD V+
Sbjct: 652 SHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVI 711

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L   C++  +V + E AA  +L LDP DS +Y+LL+N+Y +S  W +  + R++M +
Sbjct: 712 WKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQ 771

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             ++K PGCS IEV   ++ F+  DK HP   ++Y+ L  L
Sbjct: 772 GRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSREVYEMLNNL 812



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 202/443 (45%), Gaps = 55/443 (12%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           +P+  SWN  + G+ + G  R++V L  +M R G   PD  T  +L K C  L    LG 
Sbjct: 98  DPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRG-VAPDRTTLAVLLKACGGLEDLALGV 156

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I    +K G ++D+   +A++ ++  C  L  A   F     RN VSW + I G V++ 
Sbjct: 157 QIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNE 216

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
                + LF  MQ   +   +     +  +CA +  L+  R++H +  ++  +    +  
Sbjct: 217 QYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGT 276

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           A++D+Y K   L  A   F S+ N TV +C  M+VG  + G                   
Sbjct: 277 AIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGL------------------ 318

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
                          EAL LF  M  +GI  D V+     SAC+++     G+ +H    
Sbjct: 319 -------------GAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAI 365

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K  F+++V +  A++D+Y KC  + +A  VF EM +R+S+++ AII  L  +    D I+
Sbjct: 366 KSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 425

Query: 400 YFSEMIGVGLMPDEITFLGILSACC-----------HGGLVDEGRKYFAQMSSIFRLSPK 448
           Y +EM+  G+ PD+ T+  +L AC            HG  +  G    A +SS       
Sbjct: 426 YLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSST------ 479

Query: 449 LKHYSCMVDLLGRSGLLEEAEQL 471
                 +VD+  + G++ EA++L
Sbjct: 480 ------VVDMYCKCGMITEAQKL 496



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 186/444 (41%), Gaps = 68/444 (15%)

Query: 81  TYPLLFKVCASLGLRFL--GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           T+  L+++CA  G   L  G      +L  GF    +V N ++ ++  CG    A  VFD
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 139 ESCVRNLVSWNS-------------------------------LINGFVRSGFPREAIRL 167
               R+ VSWN+                               L++G+ + G  R+++ L
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 168 FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
             +M    V PD  T+  ++ AC  LEDL LG +IH    ++GL + V   +AL+DMY K
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY 287
           C  LE A   F  M                                E+  V W A I G 
Sbjct: 184 CRSLEDALRFFHGM-------------------------------GERNSVSWGAAIAGC 212

Query: 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
           VQ ++    L LF +MQ  G+            +C+ +  L     +H    K  F+ + 
Sbjct: 213 VQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADR 272

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           V+GTA+VD+YAK  ++  A + F  +P        A++ GL   G   +A+  F  M   
Sbjct: 273 VVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRS 332

Query: 408 GLMPDEITFLGILSACCH-GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLE 466
           G+  D ++  G+ SAC    G +   + +   + S F +   +++   ++DL G+   L 
Sbjct: 333 GIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRN--AILDLYGKCKALV 390

Query: 467 EAEQLIRSMPMAADVVVWGALFFA 490
           EA  + + M    D V W A+  A
Sbjct: 391 EAYLVFQEMEQ-RDSVSWNAIIAA 413


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 206/566 (36%), Positives = 301/566 (53%), Gaps = 43/566 (7%)

Query: 27   NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            ++DY  K+   +   ++ +WN  + GF ++G   +A  L+++M  N  T PD+ T   L 
Sbjct: 708  SVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEIT-PDSVTVMTLI 766

Query: 87   KVCASLGLRFLGYEIFGHV-LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--ESCVR 143
            +  AS        E    V ++LG DV + V N  I  +  CGDL  A  VF+  +   R
Sbjct: 767  Q-SASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDR 825

Query: 144  NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
             +VSWNS+   +   G   +A  L+  M  E  +PD  T I + ++C   E L  GR IH
Sbjct: 826  TVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIH 885

Query: 204  WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
             +    G    +   N  + MY K     SA  +FD M ++T VS               
Sbjct: 886  SHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVS--------------- 930

Query: 264  IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
                            W  +I GY +     EALALFH M  +G KPD VT +  +S C 
Sbjct: 931  ----------------WTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCG 974

Query: 324  QLGALDDGIWIHRFIE----KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
            + G+L+ G WI    +    K +   NV++  AL+DMY+KCG+I +A  +F   PE+  +
Sbjct: 975  KFGSLETGKWIDARADIYGCKRD---NVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 1031

Query: 380  TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
            T+T +I G AL+G  L+A+  FS+MI +   P+ ITFL +L AC H G +++G +YF  M
Sbjct: 1032 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 1091

Query: 440  SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
              ++ +SP L HYSCMVDLLGR G LEEA +LIR+M    D  +WGAL  AC++H NV I
Sbjct: 1092 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 1151

Query: 500  GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
             E+AA  L  L+PQ +  YV +AN+Y  + MW+   ++R +M++R ++K PG S I+VNG
Sbjct: 1152 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNG 1211

Query: 560  LLYEFIVRDKSHPELEQIYDCLVQLT 585
              + F V +  H E E IY  L  L+
Sbjct: 1212 KNHSFTVGEHGHVENEVIYFTLNGLS 1237



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 223/478 (46%), Gaps = 35/478 (7%)

Query: 45   SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
            +WN+ IR  +      E++ L+++M R GG  P+NFT+P + K CA L        +  H
Sbjct: 625  AWNLQIREAVNRNDPVESLLLFREMKR-GGFEPNNFTFPFVAKACARLADVGCCEMVHAH 683

Query: 105  VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            ++K  F  D++V  A + +FV C  +  A  VF+    R+  +WN++++GF +SG   +A
Sbjct: 684  LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 743

Query: 165  IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
              LFR+M+L  + PD VT++ ++ + +  + L L   +H      G+ + V +AN  +  
Sbjct: 744  FSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWIST 803

Query: 225  YVKCGKLESAEEIFDSMV--NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            Y KCG L+SA+ +F+++   ++TVVS  +M   Y+ FG      + FD            
Sbjct: 804  YGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFG------EAFD------------ 845

Query: 283  IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
                         A  L+  M     KPD  T ++  ++C     L  G  IH       
Sbjct: 846  -------------AFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLG 892

Query: 343  FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
             + ++      + MY+K  +   A  +F  M  R  +++T +I G A  G   +A++ F 
Sbjct: 893  TDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFH 952

Query: 403  EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
             MI  G  PD +T L ++S C   G ++ G+   A+          +   + ++D+  + 
Sbjct: 953  AMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKC 1012

Query: 463  GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
            G + EA  +  + P    VV W  +     L+G      +   K+++LD + + I  L
Sbjct: 1013 GSIHEARDIFDNTPEKT-VVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFL 1069


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 189/598 (31%), Positives = 324/598 (54%), Gaps = 37/598 (6%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLET-GKMREAVDLYKQMLR-NGGTRPDNFT 81
           +++NL    ++  +  + +  ++N  + G++ T G    A+ L+ +M   N  TR D F+
Sbjct: 66  KTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRIDEFS 125

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--- 138
              +  + A L +   G ++  +++K   ++  +  +++I ++  CG     C VFD   
Sbjct: 126 LTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCA 185

Query: 139 ------------ESCVR------------------NLVSWNSLINGFVRSGFPREAIRLF 168
                        +C R                  ++VSWN+LI+G+V++G   +A++LF
Sbjct: 186 GVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLF 245

Query: 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
             M+   V  +E T+ G++SACA L  L LG+E+H ++ +  L     +++ L+D+Y KC
Sbjct: 246 VHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKC 305

Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
           G ++ AE ++ ++      S T+MIVG++  G +  AR++FD L EK  + W A+  GYV
Sbjct: 306 GNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYV 365

Query: 289 QAKRSKEALALFHEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347
           ++++ +    L  E +    + PDA+  +  L AC+   AL+ G  IH ++ +    L+ 
Sbjct: 366 KSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDE 425

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
            L +A+VDMY+K GNI  A ++F  +  R+++ Y  +  G A HG    AI  F EM+  
Sbjct: 426 KLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLER 485

Query: 408 GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
           G+ PD +TF+ +LSAC H GLV+ G KYFA M+  + + P++ HY+CM+DL GR+  LE+
Sbjct: 486 GVRPDAVTFVALLSACRHCGLVELGEKYFASMTD-YNILPEIDHYACMIDLYGRANQLEK 544

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527
           A   ++ +P+  D V+ GA   ACR++ N  +   A  K+L ++  +   YV LAN+Y  
Sbjct: 545 AVAFMKRIPIEPDAVILGAFLNACRINRNTKLAREAEEKILRIEGDNGARYVQLANVYAA 604

Query: 528 SNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
              W E G++R+ M E  ++K  GCS + V   ++ F   D SH   E IY  L+ LT
Sbjct: 605 EGKWVEMGRIRRKMRENEIKKFAGCSWVYVENRVHIFTSGDSSHSSAEAIYSILLILT 662



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/550 (24%), Positives = 251/550 (45%), Gaps = 82/550 (14%)

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           +++    +   ++NG T    FT   L  + +  G     +++F  +     + +++  N
Sbjct: 4   IKDGFRFHAHAIKNGIT-STVFTSNQLIHLYSKHGFLAEAHKLFDEMP----ERNVFTWN 58

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS-GFPREAIRLFRDMQL--ER 175
           A+I  ++   +L  A  +FD +  ++LV++NS+++G++ + G+   A++LF +MQ   + 
Sbjct: 59  AIIWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDE 118

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
              DE ++  M++  A+L   + G+++H Y+ ++   ++    ++L+DMY KCG      
Sbjct: 119 TRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVC 178

Query: 236 EIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIF-DDLPEKYVVPWNAIIGGYVQAKRS 293
           ++FD       +VS   M+    + G L++   +F  DL    VV WN +I GYVQ    
Sbjct: 179 QVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCE 238

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
           ++AL LF  M+   ++ +  T    LSAC+ L +L  G  +H ++ K     N  + + L
Sbjct: 239 EDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGL 298

Query: 354 VDMYAKC-------------------------------GNIAKALQVFHEMPERNSLTYT 382
           VD+Y KC                               GN+ +A ++F  + E++S+ +T
Sbjct: 299 VDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWT 358

Query: 383 AIIGGLALHGKALDAISYFSEM-IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           A+  G     +        SE  +   ++PD +  + +L AC     ++ G++  A +  
Sbjct: 359 ALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLR 418

Query: 442 I-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAA------------ 479
           I   L  KL   S MVD+  +SG ++ AE++ + +          M A            
Sbjct: 419 IGIELDEKL--VSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAI 476

Query: 480 -------------DVVVWGALFFACRLHGNVSIGER--AAMKLLELDPQDSGIYVLLANM 524
                        D V + AL  ACR  G V +GE+  A+M    + P+    Y  + ++
Sbjct: 477 QQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEIDH-YACMIDL 535

Query: 525 YRDSNMWEEA 534
           Y  +N  E+A
Sbjct: 536 YGRANQLEKA 545



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 43/257 (16%)

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           ++ DG   H    K      V     L+ +Y+K G +A+A ++F EMPERN  T+ AII 
Sbjct: 3   SIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIW 62

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH-GGLVDEGRKYFAQMSSI--- 442
                      +    E+       D +T+  +LS   +  G      K F +M S+   
Sbjct: 63  AYI----KTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDE 118

Query: 443 -----------FRLSPKLK----------------------HYSCMVDLLGRSGLLEEAE 469
                        LS KL                         S ++D+  + G   E  
Sbjct: 119 TRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVC 178

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
           Q+        D+V   A+  AC   G + +G     + LEL+  D   +  L + Y  + 
Sbjct: 179 QVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELN--DVVSWNTLISGYVQNG 236

Query: 530 MWEEAGKVRKMMEERGV 546
             E+A K+   MEE  V
Sbjct: 237 CEEDALKLFVHMEENEV 253


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 287/521 (55%), Gaps = 41/521 (7%)

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           MLRN    P   ++ L+ + CA  G   LG      ++K+GF+ DM +   ++  +   G
Sbjct: 1   MLRND-VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVG 59

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
                    D  C +            V  G PR                D V    M+S
Sbjct: 60  ---------DLKCAKR-----------VFMGMPRR---------------DVVANNAMIS 84

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           A ++   +   R +   ++E          N+++  Y K G + SA  +FD    K VVS
Sbjct: 85  ALSKHGYVEEARNLFDNMTERNSCSW----NSMITCYCKLGDINSARLMFDCNPVKDVVS 140

Query: 249 CTTMIVGYAKFGFLDIARKIFDDL-PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
              +I GY K   L  A+++F  +   +  V WN +I  YVQ      A+++F +MQ+  
Sbjct: 141 WNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN 200

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +KP  VT V  LSAC+ LGALD G WIH +I  +   ++VVLG AL+DMY KCG +  A+
Sbjct: 201 VKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAI 260

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            VFH +  +N   + +II GL ++G+  +AI+ F  M   G+ PD +TF+GILS C H G
Sbjct: 261 DVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSG 320

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           L+  G++YF++M  ++ L P ++HY CMVDLLGR+G L+EA +LIR+MPM  + +V G+L
Sbjct: 321 LLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSL 380

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             AC++H +  +GE+   +LLELDP D G YV L+N+Y   + W++    RK+M +RGV 
Sbjct: 381 LRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVH 440

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           KTPGCSSIEVN +++EF+  D SHP+  QI   L ++ +  
Sbjct: 441 KTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKEL 481



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 12/218 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS +WN  I  +++ G+   A+ +++QM ++   +P   T   L   CA LG   +G  I
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQM-QSENVKPTEVTMVSLLSACAHLGALDMGEWI 227

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G++      +D+ + NA+I ++  CG L  A +VF     +N+  WNS+I G   +G  
Sbjct: 228 HGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRG 287

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE----SGLTLTVPL 217
            EAI  F  M+ E ++PD VT +G++S C+    L+ G+    Y SE     GL   V  
Sbjct: 288 EEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR---YFSEMLGVYGLEPGVEH 344

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
              ++D+  + G L+ A E+  +M  K      +M++G
Sbjct: 345 YGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 378



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 34/175 (19%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+    +   +   N F WN  I G    G+  EA+  +  M +  G +PD  T+  +  
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKE-GIKPDGVTFVGILS 314

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+  GL   G   F  +L                     G  GL   V    C+ +L+ 
Sbjct: 315 GCSHSGLLSAGQRYFSEML---------------------GVYGLEPGVEHYGCMVDLLG 353

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
                    R+G+ +EA+ L R M +   +P+ + +  ++ AC   +D  LG ++
Sbjct: 354 ---------RAGYLKEALELIRAMPM---KPNSMVLGSLLRACQIHKDTKLGEQV 396


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 188/593 (31%), Positives = 313/593 (52%), Gaps = 46/593 (7%)

Query: 5   GLISHGF-----------APSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGF 53
           GL++HG+             + LI+F A  +S  +D    +   + + ++ SWN  I G 
Sbjct: 429 GLVAHGYLVKLGFGTQCAVCNALISFYA--KSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 54  LETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD 113
              G   EA++L+ +M   G    D+ T   +   CA     F+G  + G+ +K G   +
Sbjct: 487 TSNGLNSEAIELFVRMWMQG-HELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGE 545

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
             + NA++ ++ +C D      +F     +N+VSW ++I  + R+G   +   L ++M L
Sbjct: 546 TSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVL 605

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
           + ++PD   +  ++   A  E L  G+ +H Y   +G+   +P+ANALM+MYV C  +E 
Sbjct: 606 DGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEE 665

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A  +FD + N                               K ++ WN +IGGY +   +
Sbjct: 666 ARLVFDHVTN-------------------------------KDIISWNTLIGGYSRNNFA 694

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            E+ +LF +M     KP+ VT    L A + + +L+ G  IH +  +  F  +     AL
Sbjct: 695 NESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNAL 753

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           VDMY KCG +  A  +F  + ++N +++T +I G  +HG   DA++ F +M G G+ PD 
Sbjct: 754 VDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDT 813

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
            +F  IL ACCH GL  EG K+F  M   +++ PKLKHY+C+VDLL  +G L+EA + I 
Sbjct: 814 ASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIE 873

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           SMP+  D  +W +L   CR+H +V + E+ A ++ +L+P+++G YVLLAN+Y ++  WE 
Sbjct: 874 SMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEA 933

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             K++  +  RG+ +  GCS IEV G ++ FI  +++HPE  +I + L  + R
Sbjct: 934 VKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVAR 986



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 204/456 (44%), Gaps = 50/456 (10%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           W   +  + + G  +E V L++QM +  G  PD      + K  ASLG    G  I G +
Sbjct: 166 WTSLMSAYAKAGDFQEGVSLFRQM-QCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLL 224

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            KLG      V NA+I ++  CG +  A  VFD    R+ +SWNS I+G+  +G+   A+
Sbjct: 225 EKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAV 284

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV---------P 216
            LF  M  E  E   VT++ ++ ACA+L    +G+ +H Y  +SGL   +          
Sbjct: 285 DLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEA 344

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L + L+ MYVKCG + SA  +FD+M +K  V                             
Sbjct: 345 LGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHV--------------------------- 377

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC-SQLGALDDGIWIH 335
              WN I+GGY +A   +E+L LF +M   GI PD    + CL  C + L    DG+  H
Sbjct: 378 ---WNLIMGGYAKAAEFEESLLLFEQMHELGITPDE-HALSCLLKCITCLSCARDGLVAH 433

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            ++ K  F     +  AL+  YAK   I  A+ VF  MP ++++++ ++I G   +G   
Sbjct: 434 GYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNS 493

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR---KYFAQMSSIFRLSPKLKHY 452
           +AI  F  M   G   D  T L +L AC        GR    Y  +   I   S      
Sbjct: 494 EAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLA---- 549

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           + ++D+           Q+ R+M    +VV W A+ 
Sbjct: 550 NALLDMYSNCSDWHSTNQIFRNMAQ-KNVVSWTAMI 584



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 177/390 (45%), Gaps = 55/390 (14%)

Query: 123 VFVSCGDLGLACNVFDESCVR--NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
            ++ CGDLG A  VFDE   R  ++  W SL++ + ++G  +E + LFR MQ   V PD 
Sbjct: 139 AYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDA 198

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
             +  ++   A L  +  G  IH  + + GL     +ANAL+ +Y +CG +E A ++FDS
Sbjct: 199 HAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDS 258

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  +  +S  + I GY   G+ D                                A+ LF
Sbjct: 259 MHARDAISWNSTISGYFSNGWHD-------------------------------RAVDLF 287

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF---------IEKENFNLNVVLGT 351
            +M + G +  +VT +  L AC++LG    G  +H +         +E     ++  LG+
Sbjct: 288 SKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGS 347

Query: 352 ALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            LV MY KCG++  A +VF  MP + N   +  I+GG A   +  +++  F +M  +G+ 
Sbjct: 348 KLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGIT 407

Query: 411 PDEITFLGILS-----ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
           PDE     +L      +C   GLV  G  Y  ++        +    + ++    +S ++
Sbjct: 408 PDEHALSCLLKCITCLSCARDGLVAHG--YLVKLG----FGTQCAVCNALISFYAKSNMI 461

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           + A  +   MP   D + W ++   C  +G
Sbjct: 462 DNAVLVFDRMPH-QDTISWNSVISGCTSNG 490



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 172/412 (41%), Gaps = 46/412 (11%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++  ++   ++ SWN  I G+   G    AVDL+ +M    GT   + T   +   CA L
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSE-GTEISSVTVLSVLPACAEL 312

Query: 93  GLRFLGYEIFGHVLKLGF---------DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
           G   +G  + G+ +K G           +D  + + ++ ++V CGD+G A  VFD    +
Sbjct: 313 GFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSK 372

Query: 144 -NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            N+  WN ++ G+ ++    E++ LF  M    + PDE  +  ++     L     G   
Sbjct: 373 GNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVA 432

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H Y+ + G      + NAL+  Y K   +++A  +FD M                     
Sbjct: 433 HGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRM--------------------- 471

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                     P +  + WN++I G      + EA+ LF  M   G + D+ T +  L AC
Sbjct: 472 ----------PHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPAC 521

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           ++      G  +H +  K        L  AL+DMY+ C +     Q+F  M ++N +++T
Sbjct: 522 ARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWT 581

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           A+I      G          EM+  G+ PD      +L    HG   DE  K
Sbjct: 582 AMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL----HGFAGDESLK 629



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           +++ Y K G L  AR +FD++P +   V  W +++  Y +A   +E ++LF +MQ  G+ 
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PDA      L   + LG++ +G  IH  +EK        +  AL+ +Y++CG +  A+QV
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  M  R+++++ + I G   +G    A+  FS+M   G     +T L +L AC   G  
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 430 DEGR---KYFAQMSSIFRLSPKLKHY-----SCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
             G+    Y  +   ++ L            S +V +  + G +  A ++  +MP   +V
Sbjct: 316 LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNV 375

Query: 482 VVW 484
            VW
Sbjct: 376 HVW 378



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPER--NSLTYTAIIGGLALHGKALDAISYFSEMI 405
           VLG  LV  Y KCG++  A  VF EMP R  +   +T+++   A  G   + +S F +M 
Sbjct: 131 VLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQ 190

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ PD      +L      G + EG      +  +  L       + ++ L  R G +
Sbjct: 191 CCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKL-GLGEACAVANALIALYSRCGCM 249

Query: 466 EEAEQLIRSMPMAADVVVWGA 486
           E+A Q+  SM  A D + W +
Sbjct: 250 EDAMQVFDSM-HARDAISWNS 269


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/575 (32%), Positives = 309/575 (53%), Gaps = 34/575 (5%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F  S LI     S+   ++   K+      P+   W   I G+ + G    A+  + +M+
Sbjct: 140 FVGSALIEL--YSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMV 197

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
                 PD  T       CA L    LG  + G V + GFD  + + N++++++   G +
Sbjct: 198 VLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSI 257

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            +A N+F E   ++++SW+S++  +  +G    A+ LF +M  +R+E + VT+I  + AC
Sbjct: 258 RIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRAC 317

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A   +L  G++IH      G  L + ++ ALMDMY+KC   E+A E+F+ M  K VVS  
Sbjct: 318 ASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWA 377

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
            +  GYA+ G                                + ++L +F  M + G +P
Sbjct: 378 VLFSGYAEIGM-------------------------------AHKSLGVFCNMLSNGTRP 406

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           DA+  V  L+A S+LG +   + +H F+ K  F+ N  +G +L+++YAKC +I  A +VF
Sbjct: 407 DAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVF 466

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACCHGGLV 429
             +   + +T+++II     HG+  +A+    +M     + P+++TF+ ILSAC H GL+
Sbjct: 467 KGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLI 526

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           +EG K F  M + ++L P ++HY  MVDLLGR G L++A  +I +MPM A   VWGAL  
Sbjct: 527 EEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLG 586

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           ACR+H N+ IGE AA+ L  LDP  +G Y LL+N+Y     W +A K+R +++E  ++K 
Sbjct: 587 ACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKI 646

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            G S +E+   ++ FI  D+ H E +QIY+ L +L
Sbjct: 647 VGQSMVEIKNEVHSFIASDRFHGESDQIYEMLRKL 681



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 230/464 (49%), Gaps = 42/464 (9%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGT--RPDNFTYPLLFKVCASLGLRFLGYEI 101
           + WN  +R +   GK  E + L+ QM  +  T  RPDN+T  +  K C+ L    LG  I
Sbjct: 68  YLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMI 127

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G  LK   D DM+V +A+I ++  CG +  A  VF E    ++V W S+I G+ ++G P
Sbjct: 128 HG-FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSP 186

Query: 162 REAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             A+  F  M  LE+V PD VT++   SACAQL D NLGR +H ++   G    + LAN+
Sbjct: 187 ELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANS 246

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           ++++Y K G +  A  +F  M  K ++S ++M+  YA  G                    
Sbjct: 247 ILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNG-------------------- 286

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                          AL LF+EM    I+ + VT +  L AC+    L++G  IH+    
Sbjct: 287 -----------AETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVN 335

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F L++ + TAL+DMY KC +   A+++F+ MP+++ +++  +  G A  G A  ++  
Sbjct: 336 YGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGV 395

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS-SIFRLSPKLKHYSCMVDLL 459
           F  M+  G  PD I  + IL+A    G+V +     A ++ S F  +  +   + +++L 
Sbjct: 396 FCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIG--ASLIELY 453

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            +   ++ A ++ + +    DVV W ++  A   HG    GE A
Sbjct: 454 AKCSSIDNANKVFKGL-RHTDVVTWSSIIAAYGFHGQ---GEEA 493



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 189/393 (48%), Gaps = 38/393 (9%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           ++    LK+G  +D +V   +  ++     L  A  +F+E+  + +  WN+L+  +   G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 160 FPREAIRLFRDMQLERV---EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
              E + LF  M  + V    PD  T+   + +C+ L+ L LG+ IH ++ +  +   + 
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKK-IDSDMF 140

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + +AL+++Y KCG++  A ++F       VV  T++I GY + G  ++            
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPEL------------ 188

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
                              ALA F  M     + PD VT V   SAC+QL   + G  +H
Sbjct: 189 -------------------ALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 229

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
            F+++  F+  + L  +++++Y K G+I  A  +F EMP ++ +++++++   A +G   
Sbjct: 230 GFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAET 289

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           +A++ F+EMI   +  + +T +  L AC     ++EG++   +++  +     +   + +
Sbjct: 290 NALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQ-IHKLAVNYGFELDITVSTAL 348

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +D+  +    E A +L   MP   DVV W  LF
Sbjct: 349 MDMYLKCFSPENAIELFNRMP-KKDVVSWAVLF 380



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 135/246 (54%), Gaps = 8/246 (3%)

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI- 308
           T + V YA++  L  A K+F++ P K V  WNA++  Y    +  E L+LFH+M A  + 
Sbjct: 40  TKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVT 99

Query: 309 --KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
             +PD  T    L +CS L  L+ G  IH F++K+  + ++ +G+AL+++Y+KCG +  A
Sbjct: 100 EERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKK-IDSDMFVGSALIELYSKCGQMNDA 158

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCH 425
           ++VF E P+ + + +T+II G   +G    A+++FS M+ +  + PD +T +   SAC  
Sbjct: 159 VKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQ 218

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
               + GR     +        KL   + +++L G++G +  A  L R MP   D++ W 
Sbjct: 219 LSDFNLGRSVHGFVKR-RGFDTKLCLANSILNLYGKTGSIRIAANLFREMPY-KDIISWS 276

Query: 486 ALFFAC 491
           ++  AC
Sbjct: 277 SM-VAC 281



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 6/166 (3%)

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H    K    L+  + T L  +YA+  ++  A ++F E P +    + A++    L GK
Sbjct: 23  LHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 394 ALDAISYFSEMIGVGLM---PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            ++ +S F +M    +    PD  T    L +C     ++ G+     +    ++   + 
Sbjct: 83  WVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKK--KIDSDMF 140

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             S +++L  + G + +A ++    P   DVV+W ++      +G+
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQNGS 185


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 193/542 (35%), Positives = 289/542 (53%), Gaps = 53/542 (9%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+ ++G  +EA+      L NG    D+ T   L   C   G    G  I  +
Sbjct: 151 SWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSY 205

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G + ++               L     VFD   VR+L+SWNS+I  +  +  P  A
Sbjct: 206 SIKHGLESEL---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 250

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT-VPLANALMD 223
           I LF++M+L R++PD +T+I + S  +QL D+   R +  +    G  L  + + NA+  
Sbjct: 251 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV-- 308

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
                                        +V YAK G +D AR +F+ LP   V+ WN I
Sbjct: 309 -----------------------------VVMYAKLGLVDSARAVFNWLPNTDVISWNTI 339

Query: 284 IGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           I GY Q   + EA+ +++ M+  G I  +  T V  L ACSQ GAL  G+ +H  + K  
Sbjct: 340 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 399

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
             L+V + T+L DMY KCG +  AL +F+++P  NS+ +  +I     HG    A+  F 
Sbjct: 400 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 459

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           EM+  G+ PD ITF+ +LSAC H GLVDEG+  F  M + + ++P LKHY CMVD+ GR+
Sbjct: 460 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 519

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G LE A + I+SM +  D  +WGAL  ACR+HGNV +G+ A+  L E++P+  G +VLL+
Sbjct: 520 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 579

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLV 582
           NMY  +  WE   ++R +   +G+ KTPG SS+EV+  +  F   +++HP  E++Y  L 
Sbjct: 580 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 639

Query: 583 QL 584
            L
Sbjct: 640 AL 641



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 229/476 (48%), Gaps = 60/476 (12%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF 96
           ++QN + ++WN+ I G+   G   E +  +   + + G  PD  T+P + K C ++    
Sbjct: 44  HIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---I 100

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156
            G +I    LK GF  D+YV  ++IH++     +G A  +FDE  VR++ SWN++I+G+ 
Sbjct: 101 DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 160

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           +SG  +EA+ L   ++      D VT++ ++SAC +  D N G  IH Y  + GL   + 
Sbjct: 161 QSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL- 215

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
                         L   +++FD M  + ++S                            
Sbjct: 216 --------------LRDCQKVFDRMYVRDLIS---------------------------- 233

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              WN+II  Y   ++   A++LF EM+ + I+PD +T +   S  SQLG +     +  
Sbjct: 234 ---WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 290

Query: 337 FIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           F  ++ + L ++ +G A+V MYAK G +  A  VF+ +P  + +++  II G A +G A 
Sbjct: 291 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFAS 350

Query: 396 DAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
           +AI  ++ M   G +  ++ T++ +L AC   G + +G K   ++     L   +   + 
Sbjct: 351 EAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTS 409

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           + D+ G+ G LE+A  L   +P   + V W  L      HG+   GE+A M   E+
Sbjct: 410 LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH---GEKAVMLFKEM 461



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 180/374 (48%), Gaps = 38/374 (10%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ES+ L  C K+   +   +  SWN  I+ +    +   A+ L+++M R    +PD  T  
Sbjct: 212 ESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM-RLSRIQPDCLTLI 270

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
            L  + + LG       + G  L+ G F  D+ + NAV+ ++   G +  A  VF+    
Sbjct: 271 SLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPN 330

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGRE 201
            +++SWN++I+G+ ++GF  EAI ++  M+ E  +  ++ T + ++ AC+Q   L  G +
Sbjct: 331 TDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK 390

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H  + ++GL L V +  +L DMY KCG+LE                             
Sbjct: 391 LHGRLLKNGLYLDVFVVTSLADMYGKCGRLED---------------------------- 422

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
              A  +F  +P    VPWN +I  +      ++A+ LF EM   G+KPD +T V  LSA
Sbjct: 423 ---ALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSA 479

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNS 378
           CS  G +D+G W    ++ + + +   L     +VDMY + G +  AL+    M  + ++
Sbjct: 480 CSHSGLVDEGQWCFEMMQTD-YGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDA 538

Query: 379 LTYTAIIGGLALHG 392
             + A++    +HG
Sbjct: 539 SIWGALLSACRVHG 552



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 193/471 (40%), Gaps = 110/471 (23%)

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D+ +  +   +   VS        + FD    R++ +WN +I+G+ R+G   E IR F  
Sbjct: 16  DIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 75

Query: 171 MQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
             L   + PD  T   ++ AC  + D   G +IH    + G          + D+YV   
Sbjct: 76  FMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGF---------MWDVYV--- 120

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
                                ++I  Y+++  +  AR +FD++P + +  WNA+I GY Q
Sbjct: 121 -------------------AASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 161

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           +  +KEAL L + ++A     D+VT V  LSAC++ G  + G+ IH +  K         
Sbjct: 162 SGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE----- 212

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
                ++   C       +VF  M  R+ +++ +II    L+ + L AIS F EM    +
Sbjct: 213 ----SELLRDCQ------KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 262

Query: 410 MPDEITF---------LGILSAC---------------------------CHGGLVDEGR 433
            PD +T          LG + AC                              GLVD  R
Sbjct: 263 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 322

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM----PMAADVVVWGALFF 489
             F  + +   +S     ++ ++    ++G   EA ++   M     +AA+   W ++  
Sbjct: 323 AVFNWLPNTDVIS-----WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 377

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYV------LLANMYRDSNMWEEA 534
           AC   G +  G +   +LL+     +G+Y+       LA+MY      E+A
Sbjct: 378 ACSQAGALRQGMKLHGRLLK-----NGLYLDVFVVTSLADMYGKCGRLEDA 423


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 203/591 (34%), Positives = 303/591 (51%), Gaps = 81/591 (13%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  +  ++       A+ L+ +M       PD  +   +   CASL     G ++ G 
Sbjct: 330 SWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGF 389

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            ++ G   D++V NAV+ ++  CG +  A  VF     +++VSWN+++ G+ ++G    A
Sbjct: 390 SIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHA 449

Query: 165 IRLFRDMQLERVE-----------------------------------PDEVTMIGMVSA 189
           + LF  M  E +E                                   P+ VT++ ++SA
Sbjct: 450 LSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSA 509

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVP--------LANALMDMYVKCGKLESAEEIFDSM 241
           C  +  L  G+E H Y  +  L L  P        + N L+DMY KC   E         
Sbjct: 510 CVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTE--------- 560

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALAL 299
                                 +ARK+FD +  K   VV W  +IGGY Q   +  AL L
Sbjct: 561 ----------------------VARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQL 598

Query: 300 FHEM--QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA--LVD 355
           F  M      IKP+  T    L AC++L AL  G  +H ++ + NF  +V+L  A  L+D
Sbjct: 599 FSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR-NFYGSVMLFVANCLID 657

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           MY+K G++  A  VF  MP+RN++++T+++ G  +HG+  DA+  F EM  V L+PD IT
Sbjct: 658 MYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGIT 717

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           FL +L AC H G+VD G  +F +MS  F + P  +HY+CMVDL GR+G L EA +LI  M
Sbjct: 718 FLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEM 777

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           PM    VVW AL  ACRLH NV +GE AA +LLEL+  + G Y LL+N+Y ++  W++  
Sbjct: 778 PMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVA 837

Query: 536 KVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           ++R  M+  G++K PGCS I+    +  F V D+SHP+ +QIY+ L  L +
Sbjct: 838 RIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQ 888



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 262/477 (54%), Gaps = 23/477 (4%)

Query: 40  NPNS-FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
           +P+S F WN  IR  L  G  R+   LY+QM   G T PD++T+P +FK CA+L    LG
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT-PDHYTFPFVFKACANLSSLSLG 278

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSLINGF 155
             +   V + GF  +++V NAV+ ++  CG L  A N+FD+ C   +++LVSWNS+++ +
Sbjct: 279 ASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAY 338

Query: 156 VRSGFPREAIRLFRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           + +     A+ LF  M    +  PD ++++ ++ ACA L     GR++H +   SGL   
Sbjct: 339 MWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDD 398

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           V + NA++DMY KCGK+E A ++F  M  K VVS   M+ GY++ G L+ A  +F+ + E
Sbjct: 399 VFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTE 458

Query: 275 KY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
           +     VV W A+I GY Q  +  EAL +F +M   G +P+ VT V  LSAC  +GAL  
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 331 GIWIHRFIEKENFNL--------NVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLT 380
           G   H +  K   NL        ++ +   L+DMYAKC +   A ++F  +   +R+ +T
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVT 578

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGV--GLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +T +IGG A HG A +A+  FS M  +   + P++ T    L AC     +  GR+  A 
Sbjct: 579 WTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAY 638

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +   F  S  L   +C++D+  +SG ++ A+ +  +MP   + V W +L     +HG
Sbjct: 639 VLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ-RNAVSWTSLMTGYGMHG 694


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 188/511 (36%), Positives = 282/511 (55%), Gaps = 41/511 (8%)

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           D FTY  L K  A+ G+  +      HV KLG   D +V NA+I  +     L  A  VF
Sbjct: 204 DTFTYSFLIKALATAGVTPV-RAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVF 262

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           DE   R++VSWN+ +   VR G    A  +F +M      P++ T               
Sbjct: 263 DEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEM------PEKDT--------------- 301

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
               + W              N ++D Y K G+ E A E+F  M  + VVS +T++  Y 
Sbjct: 302 ----VSW--------------NTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYC 343

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
           K G +++AR IFD +P K +V W  ++    Q     EA  LF EM+   I+ D V  V 
Sbjct: 344 KKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVS 403

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH-EMPER 376
            L+AC++ G L  G  IHR + +     + ++  AL+DM+ KCG + +A  +F  E+ E+
Sbjct: 404 ILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEK 463

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           +S+++  IIGG A+HG    A++ F++M   G  PD +T + +LSAC H GLV+EGR++F
Sbjct: 464 DSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 523

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           A M + + + P+++HY CMVDLLGR GL++EA  +I+SMP   + V+WG+L  ACRLH N
Sbjct: 524 ANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKN 583

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           V   E AA +L  L P ++G Y +L+N+Y ++  W +  K R  M+  G +KT G S IE
Sbjct: 584 VEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIE 643

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           ++   +EF V D+ HPE +QI D + +L+ H
Sbjct: 644 LDEAFHEFTVGDRKHPESDQISDMIDRLSSH 674



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 177/374 (47%), Gaps = 43/374 (11%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S++  L    K+   +   +  SWN A+   +  G++  A  ++ +M        D  
Sbjct: 248 AYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEK-----DTV 302

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           ++  +    A  G     +E+F  +   G +V  +  + V+  +   GD+ +A  +FD+ 
Sbjct: 303 SWNTMLDGYAKAGEAEEAFELFQRMP--GRNVVSW--STVVSAYCKKGDMEMARVIFDKM 358

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +NLV+W  +++   + G   EA RLF +M+   +E D V ++ +++ACA+   L LG+
Sbjct: 359 PAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGK 418

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVNKTVVSCTTMIVGYAKF 259
            IH ++ +  L  +  + NALMDM+ KCG +  A+ IFD+ +V K  VS   +I G+A  
Sbjct: 419 RIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMH 478

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G                                 ++AL LF +M+  G  PDAVT ++ L
Sbjct: 479 G-------------------------------HGEKALNLFTQMKQQGFHPDAVTLINVL 507

Query: 320 SACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERN 377
           SAC+ +G +++G      +E +      +     +VD+  + G I +A+ +   MP E N
Sbjct: 508 SACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPN 567

Query: 378 SLTYTAIIGGLALH 391
            + + +++    LH
Sbjct: 568 EVIWGSLLSACRLH 581



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 41/234 (17%)

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGKA--------- 394
             +L   L+  YA       AL VF +MP  +R++ TY+ +I  LA  G           
Sbjct: 171 TALLANTLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAGVTPVRAAHTHV 230

Query: 395 ---------------LDAISYFSEMIGVGLMPDEITFLGILS------ACCHGGLVDEGR 433
                          +DA S    +     + DE+T   ++S      A    G VD  R
Sbjct: 231 FKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAAR 290

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
             F +M     +S     ++ M+D   ++G  EEA +L + MP   +VV W  +  A   
Sbjct: 291 SMFDEMPEKDTVS-----WNTMLDGYAKAGEAEEAFELFQRMP-GRNVVSWSTVVSAYCK 344

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
            G++   E A +   ++  ++   + ++ +      +  EAG++   M+E  +E
Sbjct: 345 KGDM---EMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIE 395


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 279/471 (59%), Gaps = 11/471 (2%)

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTM 183
           ++  +L  A  +FD     N+  + ++I  +        A+ L+R+M +  R  P+    
Sbjct: 99  LALSNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIY 158

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK-CGKLESAEEIFDSMV 242
             ++ +C Q+      R +H  +  SG      +  AL+D Y++    +ESA  +FD M 
Sbjct: 159 PHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMT 218

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            + VVS T MI GY + G +  A  +F+++PE+ V  WNA+I GY Q     EAL+LF  
Sbjct: 219 ERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRR 278

Query: 303 MQAT-------GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           M A        G +P+ VT V  LSAC   G L  G WIH ++ +    L+  +  ALVD
Sbjct: 279 MIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVD 338

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI--GVGLMPDE 413
           MY KCG + +A +VF    ER+  ++ ++I  LALHG++ +AIS F EM+  G G+ PDE
Sbjct: 339 MYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDE 398

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           +TF+G+L+AC HGGLV++G  YF  M+  + + P+++HY C+VDLLGR+G  EEA +++R
Sbjct: 399 VTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVR 458

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
            M +  D V+WG+L   C++HG+  + E +  KL+++DP + G  ++LAN+Y +   W+E
Sbjct: 459 GMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDE 518

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             KVRK+++E+   KTPGCS IE++  +++F   DK+HP  E+IY+ L  L
Sbjct: 519 VRKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLESL 569



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 217/472 (45%), Gaps = 86/472 (18%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           F   +L+ FC ++ S NL Y   I  +V++PN + +   I  +        A+ LY+ M+
Sbjct: 88  FYAFKLLRFCTLALS-NLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMV 146

Query: 71  RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDMYVH---- 117
           R     P++F YP + K C  +        +   VL+ GF+         +D Y+     
Sbjct: 147 RRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSD 206

Query: 118 -------------------NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
                               A+I  +   G +G A  +F+E   R++ SWN+LI G+ ++
Sbjct: 207 VESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQN 266

Query: 159 GFPREAIRLFRDM---------QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           G   EA+ LFR M         Q  R  P++VT +  +SAC     L LG+ IH Y+  +
Sbjct: 267 GLFMEALSLFRRMIAVEAGAWGQGNR--PNQVTAVCSLSACGHTGMLRLGKWIHGYVYRN 324

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL L   ++NAL+DMY KCG L+ A  +FD  + +++ S                     
Sbjct: 325 GLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTS--------------------- 363

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ--ATGIKPDAVTTVHCLSACSQLGA 327
                     WN++I       +S+ A+++F EM    +G+KPD VT +  L+AC+  G 
Sbjct: 364 ----------WNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGL 413

Query: 328 LDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAI 384
           ++ G W++  +  +N+ +   +     LVD+  + G   +A++V   M  E + + + ++
Sbjct: 414 VEKG-WLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSL 472

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG--GLVDEGRK 434
           + G  +HG     ++ FS    + + P+   + GI+ A  +G  G  DE RK
Sbjct: 473 LNGCKIHGHT--DLAEFSIKKLIDMDPNNGGY-GIMLANIYGELGKWDEVRK 521


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 285/497 (57%), Gaps = 52/497 (10%)

Query: 100 EIFGHVLKLG-----FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
           +I   +L+ G     F     +  A +  F S   L  A  VFD+    NL +WN+LI  
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPS---LDYAQQVFDQIPHPNLYTWNTLIRA 109

Query: 155 FVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           +  S  P +++ +F  M  +  + PD+ T   ++ A ++LE+L  G+  H  + +  L  
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            V + N+L+  Y KCG+L                      +GY          ++F + P
Sbjct: 170 DVFILNSLIHFYAKCGELG---------------------LGY----------RVFVNXP 198

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + VV WN++I  +VQ    +EAL LF EM+   +KP+ +T V  LSAC++    + G W
Sbjct: 199 RRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRW 258

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII-------- 385
           +H +IE+     ++ L  A++DMY KCG++  A ++F +MPE++ +++T ++        
Sbjct: 259 VHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 318

Query: 386 ----GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
                GLA+HG   DAI+ FS+M    + P+ +TF  IL AC H GLV+EGR +F QM  
Sbjct: 319 YDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMEL 378

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           ++ + P +KHY+CMVD+LGR+GLLEEA +LI  MPMA    VWGAL  AC +H NV + E
Sbjct: 379 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAE 438

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
           +A  +L+EL+P + G YVLL+N+Y  +  W+    +RK+M + G++K PGCSSIEV+G++
Sbjct: 439 QACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIV 498

Query: 562 YEFIVRDKSHPELEQIY 578
           +EF+V D SHP  ++IY
Sbjct: 499 HEFLVGDNSHPSAKKIY 515



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 227/410 (55%), Gaps = 27/410 (6%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGL    F+ SRLI   A+S   +LDY  ++   + +PN ++WN  IR +  +    
Sbjct: 58  MLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH 117

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +++ ++ +ML      PD FT+P L K  + L   F G    G V+K+    D+++ N++
Sbjct: 118 QSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSL 177

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH +  CG+LGL   VF     R++VSWNS+I  FV+ G P EA+ LF++M+ + V+P+ 
Sbjct: 178 IHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           +TM+G++SACA+  D   GR +H YI  + +  ++ L+NA++DMY KCG +E A+ +FD 
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K +VS TTM+VGYAK G  D A+                   G       K+A+ALF
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQ-------------------GLAMHGHGKDAIALF 338

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA----LVDM 356
            +MQ   +KP+AVT  + L ACS +G +++G     F  +      V+ G      +VD+
Sbjct: 339 SKMQEDKVKPNAVTFTNILCACSHVGLVEEG---RTFFNQMELVYGVLPGVKHYACMVDI 395

Query: 357 YAKCGNIAKALQVFHEMPERNSLT-YTAIIGGLALHGKALDAISYFSEMI 405
             + G + +A+++  +MP   + + + A++G   +H   + A    S++I
Sbjct: 396 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLI 445


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/479 (37%), Positives = 285/479 (59%), Gaps = 10/479 (2%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ--LER 175
           N ++  +   G    A  +FDE   RNLVS+NSLI+G  R  F +EA++ FR+MQ  +  
Sbjct: 148 NTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGG 207

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           +  DE T++ +VS C+ L+ +   R++H   +  G    + L NAL+D Y KCG+  S+ 
Sbjct: 208 LMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSF 267

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +F SMV K  VS T+M+V Y +   +D A K+F+++P KY V W A+I G+V+  R  E
Sbjct: 268 CLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYE 327

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH----RFIEKENFNLNVVLGT 351
           AL +FH+M   G+ P A T V  L AC+    +  G  +H    R    +N   NV +  
Sbjct: 328 ALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNL-FNVYVFN 386

Query: 352 ALVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           AL+DMYAKCG++  A  +F  M   ++ +++  +I G A +G+  D+++ F  MI   + 
Sbjct: 387 ALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIE 446

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P+ +TFLG+LSAC H GLV+ G +    M   + + PK  HY+ ++DLLGR   LEEA  
Sbjct: 447 PNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMC 506

Query: 471 LIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528
           LI  +P  ++  + +WGA+   CR+HGN+ +  +AA  L  L+P+++G YV+L+N+Y  S
Sbjct: 507 LIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYVMLSNIYAAS 566

Query: 529 NMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
             W +  ++R +M+ERG++K P  S IE+    +EF+ +DK HP++ +I +   +L +H
Sbjct: 567 GRWSDTNRIRNVMKERGLKKEPAFSRIELKESRHEFVAKDKFHPQIGEIREANSKLVQH 625



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 166/338 (49%), Gaps = 37/338 (10%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++S C   + L  G+ +H  + ++ L     LAN L+D+Y KCG  ES  + FD + NKT
Sbjct: 84  LISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKT 143

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ- 304
             +  T++  Y+K G  + A K+FD++P++ +V +N++I G  + +  KEA+  F EMQ 
Sbjct: 144 TRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQN 203

Query: 305 -ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG-- 361
              G+  D  T V  +S CS L  +     +H       F  N++L  AL+D Y KCG  
Sbjct: 204 GVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEP 263

Query: 362 -----------------------------NIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
                                         I  A +VF+EMP + ++++ A+I G   +G
Sbjct: 264 NSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNG 323

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH- 451
           +  +A+  F +MI  G++P   TF+ +L AC    L+  G++   Q+    R S  L + 
Sbjct: 324 RCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIR-GRSSDNLFNV 382

Query: 452 --YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
             ++ ++D+  + G ++ AE L   M    DVV W  L
Sbjct: 383 YVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTL 420



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 181/404 (44%), Gaps = 79/404 (19%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN-GGTRPDNFTYPLLFKVCAS 91
           K+   +   N  S+N  I G       +EAV  +++M    GG   D FT   L   C+ 
Sbjct: 165 KLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSC 224

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD---------------------- 129
           L       ++ G    +GF  ++ ++NA+I  +  CG+                      
Sbjct: 225 LDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSM 284

Query: 130 ---------LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
                    +  AC VF+E  V+  VSW +LI+GFV++G   EA+ +F  M  E V P  
Sbjct: 285 VVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRA 344

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYI---SESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            T + ++ ACA    +  G+++H  I     S     V + NALMDMY KCG ++SAE +
Sbjct: 345 QTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENL 404

Query: 238 FDSMVN-KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           F+ M++ K VVS  T+I G+A+ G                               R +++
Sbjct: 405 FEMMIHVKDVVSWNTLITGFAQNG-------------------------------RGEDS 433

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-----HRFIEKENFNLNVVLGT 351
           LA+F  M  + I+P+ VT +  LSAC+  G ++ G+ +      R+  K   N   +   
Sbjct: 434 LAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYAL--- 490

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNS---LTYTAIIGGLALHG 392
            L+D+  +   + +A+ +  ++P   S     + A++GG  +HG
Sbjct: 491 -LIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHG 533



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 151/305 (49%), Gaps = 22/305 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           + +  +D   K+   +    + SW   I GF++ G+  EA++++ QM++  G  P   T+
Sbjct: 289 TRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKE-GVLPRAQTF 347

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVD----MYVHNAVIHVFVSCGDLGLACNVFD 138
             +   CAS  L   G ++   +++ G   D    +YV NA++ ++  CGD+  A N+F+
Sbjct: 348 VSVLDACASEALIGRGKQVHCQIIR-GRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFE 406

Query: 139 ESC-VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
               V+++VSWN+LI GF ++G   +++ +F  M    +EP+ VT +G++SAC     +N
Sbjct: 407 MMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVN 466

Query: 198 LGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT---VVSCTTMI 253
            G E+   +    G+         L+D+  +  +LE A  + + + N+    +     ++
Sbjct: 467 AGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVL 526

Query: 254 VGYAKFGFLDIARKIFDDL----PE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            G    G L++ARK  + L    PE   +YV+  N     Y  + R  +   + + M+  
Sbjct: 527 GGCRVHGNLELARKAAEALFALEPENTGRYVMLSNI----YAASGRWSDTNRIRNVMKER 582

Query: 307 GIKPD 311
           G+K +
Sbjct: 583 GLKKE 587


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/568 (34%), Positives = 310/568 (54%), Gaps = 34/568 (5%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           I GF+     ++A+ ++ +ML + G  P+  T   + K C   G   L   I G  +K  
Sbjct: 217 IAGFVLNELPKDALGVFHEML-SCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSN 275

Query: 110 F-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV------------ 156
             D ++ V N++I +++  GD   A  +FDE  VR++VSW +L++ +             
Sbjct: 276 LLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVL 335

Query: 157 -------------------RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
                              + G  +EA+ L+  M  +   P+      ++ ACA L+DL 
Sbjct: 336 DEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLR 395

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            GR+IH    +   +  V +++AL+DMY KC +L  A+ IF S+  K +V   ++I GY+
Sbjct: 396 SGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYS 455

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
               +  A ++F  +P + V  WN+II GY Q ++  +AL  FH M A+G  P  +T   
Sbjct: 456 NNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSS 515

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L AC+ L +L+ G  +H  I K     ++ +GTAL DMYAK G++  + +VF+EMP+RN
Sbjct: 516 VLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            + +TA+I GLA +G A ++I  F +MI  G+ P+E TFL IL AC H GLV+    YF 
Sbjct: 576 DVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFE 635

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M +   +SPK KHY+CMVD+L R+G L EAE L+  +   ++   W AL  AC ++ N 
Sbjct: 636 MMQAC-GISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNK 694

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
            +GERAA +L ELD  ++  YVLL+NMY     W++A ++R +M+   ++K  GCS +++
Sbjct: 695 EMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQI 754

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            G    F   +  HP L  +Y+ L  LT
Sbjct: 755 RGQYQAFFSWETKHPLLPDVYEMLDLLT 782



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 188/375 (50%), Gaps = 38/375 (10%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           + ++I GFV +  P++A+ +F +M    V P+E+T++ ++ AC    + +L   I     
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAM 272

Query: 208 ESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +S L    + + N+L+ +Y++ G  ++A  +FD M  + VVS T ++  YA+ G L+ AR
Sbjct: 273 KSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           ++ D++PE+  V W  ++  + Q   +KEA++L+ +M A G +P+       L AC+ L 
Sbjct: 333 RVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQ 392

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH--------------- 371
            L  G  IH    K   + NV + +AL+DMY KC  +  A  +F+               
Sbjct: 393 DLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLIS 452

Query: 372 ----------------EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
                           +MP RN  ++ +II G A + + +DA+  F  M+  G  P EIT
Sbjct: 453 GYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEIT 512

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIR 473
           F  +L AC     ++ G+   A+   I +L  K   +  + + D+  +SG L+ ++++  
Sbjct: 513 FSSVLLACASLCSLEMGKMVHAK---IIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFY 569

Query: 474 SMPMAADVVVWGALF 488
            MP   D V W A+ 
Sbjct: 570 EMPKRND-VAWTAMI 583



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 186/428 (43%), Gaps = 42/428 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           +E  +L+   ++L  +   N  SW   +    + G  +EAV LY QML +G  RP+   +
Sbjct: 323 AELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADG-CRPNISCF 381

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CASL     G +I    LK+    +++V +A+I ++  C  L  A  +F     
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV-------------------------- 176
           +N+V WNSLI+G+  +    EA  LF+ M    V                          
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 177 -----EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P E+T   ++ ACA L  L +G+ +H  I + G+  ++ +  AL DMY K G L
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGY 287
           +S++ +F  M  +  V+ T MI G A+ GF + +  +F+D+    + P    + AI+   
Sbjct: 562 DSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621

Query: 288 VQAKRSKEALALFHEMQATGIKPDA---VTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
             +   + A+  F  MQA GI P A      V  L+    L   +D   + +   K   N
Sbjct: 622 SHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAED--LLLKIESKSEAN 679

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
               L +A  ++Y       +A +   E+ + N+  Y  +    A  GK  DA      M
Sbjct: 680 SWAALLSA-CNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILM 738

Query: 405 IGVGLMPD 412
            G+ L  D
Sbjct: 739 KGINLKKD 746



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 141/296 (47%), Gaps = 34/296 (11%)

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           +VK G + SA  +FD M  ++VVS TTM+    K G +  A +++   P   V  + A+I
Sbjct: 158 HVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMI 217

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF- 343
            G+V  +  K+AL +FHEM + G+ P+ +T V  + AC   G  D  + I     K N  
Sbjct: 218 AGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLL 277

Query: 344 --NL-----------------------------NVVLGTALVDMYAKCGNIAKALQVFHE 372
             NL                             +VV  TAL+D+YA+ G++  A +V  E
Sbjct: 278 DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDE 337

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           MPERN +++  ++      G A +A+S +S+M+  G  P+   F  +L AC     +  G
Sbjct: 338 MPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSG 397

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           RK   Q   +   S  +   S ++D+  +   L +A+ +  S+P   ++V W +L 
Sbjct: 398 RKIHNQTLKM-ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ-KNIVCWNSLI 451


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/556 (33%), Positives = 307/556 (55%), Gaps = 5/556 (0%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++  N+  P+  + +  I  F   G   EA+ LY   LR  G +P N  +  + K C + 
Sbjct: 87  QLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYAS-LRARGIKPHNSVFLTVAKACGAS 145

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G      E+    ++ G   D ++ NA+IH +  C  +  A  VFD+  V+++VSW S+ 
Sbjct: 146 GDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMS 205

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           + +V  G PR  + +F +M    V+P+ VT+  ++ AC++L+DL  GR IH +    G+ 
Sbjct: 206 SCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMI 265

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             V + +AL+ +Y +C  ++ A  +FD M ++ VVS   ++  Y      D    +F  +
Sbjct: 266 ENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQM 325

Query: 273 PEKYV----VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
             K V      WNA+IGG ++  ++++A+ +  +MQ  G KP+ +T    L ACS L +L
Sbjct: 326 SSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESL 385

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
             G  +H ++ +     ++   TALV MYAKCG++  +  VF  +  ++ + +  +I   
Sbjct: 386 RMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIAN 445

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           A+HG   + +  F  M+  G+ P+ +TF G+LS C H  LV+EG + F  M     + P 
Sbjct: 446 AMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPD 505

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
             HY+CMVD+  R+G L EA + I+ MPM      WGAL  ACR++ NV + + +A KL 
Sbjct: 506 ANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLF 565

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           E++P + G YV L N+   + +W EA + R +M+ERG+ KTPGCS ++V   ++ F+V D
Sbjct: 566 EIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGD 625

Query: 569 KSHPELEQIYDCLVQL 584
           K++ E ++IY+ L +L
Sbjct: 626 KNNMESDKIYNFLDEL 641



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 169/406 (41%), Gaps = 72/406 (17%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GD   A  +FD     +  + ++LI+ F   G P EAIRL+  ++   ++P     + + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC    D +  +E+H      G+     L NAL+  Y KC  +E A  +FD +V K VV
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T+M   Y   G           LP                    +  LA+F EM   G
Sbjct: 200 SWTSMSSCYVNCG-----------LP--------------------RLGLAVFCEMGWNG 228

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           +KP++VT    L ACS+L  L  G  IH F  +     NV + +ALV +YA+C ++ +A 
Sbjct: 229 VKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQAR 288

Query: 368 QVFHEMPERNSL-----------------------------------TYTAIIGGLALHG 392
            VF  MP R+ +                                   T+ A+IGG   +G
Sbjct: 289 LVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENG 348

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPKLK 450
           +   A+    +M  +G  P++IT    L AC    +++  R        +FR  L   L 
Sbjct: 349 QTEKAVEMLRKMQNLGFKPNQITISSFLPAC---SILESLRMGKEVHCYVFRHWLIGDLT 405

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             + +V +  + G L  +  +   M    DVV W  +  A  +HGN
Sbjct: 406 TMTALVYMYAKCGDLNLSRNVF-DMICRKDVVAWNTMIIANAMHGN 450



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 106/272 (38%), Gaps = 37/272 (13%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+   +  G    A+++FD++      +C+T+I  +   G           LP       
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRG-----------LP------- 113

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                         EA+ L+  ++A GIKP     +    AC   G       +H    +
Sbjct: 114 -------------NEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIR 160

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                +  LG AL+  Y KC  +  A +VF ++  ++ +++T++       G     ++ 
Sbjct: 161 CGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAV 220

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY--FAQMSSIFRLSPKLKHYSCMVDL 458
           F EM   G+ P+ +T   IL AC     +  GR    FA    +      +   S +V L
Sbjct: 221 FCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE---NVFVCSALVSL 277

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
             R   +++A  +   MP   DVV W  +  A
Sbjct: 278 YARCLSVKQARLVFDLMPH-RDVVSWNGVLTA 308


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 286/475 (60%), Gaps = 14/475 (2%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           Y+ NA+   + S G++  A  +FDE  +  ++ V W +L++ F R G    +++LF +M+
Sbjct: 44  YLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMR 103

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
            +RVE D V+++ +   CA+LEDL  G + H    + G   +V + NALMDMY KCG + 
Sbjct: 104 RKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVS 163

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
             + IF ++  K+VVS T ++    K+  L   R++FD++PE+ VV W  ++ GY+ A  
Sbjct: 164 EVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGF 223

Query: 293 SKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI--------EKENF 343
           ++E L L  EM    G   + VT    LSAC+Q G L  G W+H +         E+E +
Sbjct: 224 TREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETY 283

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           +  V++GTALVDMYAKCGNI  +++VF  M +RN +T+ A+  GLA+HGK    I  F E
Sbjct: 284 D-GVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPE 342

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M+   + PD++TF  +LSAC H G+VDEG + F  +   + L PK+ HY+CMVD+LGR+G
Sbjct: 343 MVR-EVKPDDLTFTALLSACSHLGMVDEGWRCFHSL-QFYGLEPKVDHYACMVDILGRAG 400

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            +EEAE L+R MP+  + VV G+L  +C +HG + I ER   +L+++ P  +   +L++N
Sbjct: 401 RIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSN 460

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           MY      + A  +R  +  RG+ K PG SSI VN  ++ F   D+SHP  +++Y
Sbjct: 461 MYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEVY 515



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 172/397 (43%), Gaps = 75/397 (18%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLRF 96
           + + ++  W   +  F   G +  ++ L+ +M R      D+ +   LF VCA L  LRF
Sbjct: 71  LSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEM-RRKRVEIDHVSLVCLFGVCAKLEDLRF 129

Query: 97  LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG---------------------------- 128
            G +  G  +K+GF   + V NA++ ++  CG                            
Sbjct: 130 -GEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLV 188

Query: 129 ---DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP-DEVTMI 184
               L     VFDE   RN+V+W  ++ G++ +GF RE + L  +M        + VT+ 
Sbjct: 189 KWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLC 248

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTL-------TVPLANALMDMYVKCGKLESAEEI 237
            M+SACAQ  +L +GR +H Y  +  + +        V +  AL+DMY KCG ++S+ ++
Sbjct: 249 SMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKV 308

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  M  + VV+                               WNA+  G     + +  +
Sbjct: 309 FRLMRKRNVVT-------------------------------WNALFSGLAMHGKGRMVI 337

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            +F EM    +KPD +T    LSACS LG +D+G      ++       V     +VD+ 
Sbjct: 338 DMFPEM-VREVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDIL 396

Query: 358 AKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
            + G I +A  +  EMP   N +   +++G  ++HGK
Sbjct: 397 GRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGK 433



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 144/346 (41%), Gaps = 80/346 (23%)

Query: 196 LNLGREIHWYISESGLTLTVP---LANALMDMYVKCGKLESAEEIFDS--MVNKTVVSCT 250
           L+ GRE+H  ++ SGL    P   L+NAL   Y   G++ +A+++FD   + +K  V  T
Sbjct: 22  LHPGRELHAVLTTSGLK-KAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWT 80

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           T++  +++FG L                                 ++ LF EM+   ++ 
Sbjct: 81  TLLSSFSRFGLL-------------------------------VNSMKLFVEMRRKRVEI 109

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG--------- 361
           D V+ V     C++L  L  G   H    K  F  +V +  AL+DMY KCG         
Sbjct: 110 DHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIF 169

Query: 362 ----------------------NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
                                  + +  +VF EMPERN + +T ++ G    G   + + 
Sbjct: 170 QALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLE 229

Query: 400 YFSEMI---GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY---- 452
             +EM+   G GL  + +T   +LSAC   G +  GR           +  + + Y    
Sbjct: 230 LLAEMVFRCGHGL--NFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVM 287

Query: 453 --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             + +VD+  + G ++ + ++ R M    +VV W ALF    +HG 
Sbjct: 288 VGTALVDMYAKCGNIDSSIKVFRLM-RKRNVVTWNALFSGLAMHGK 332



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 43/223 (19%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           N+D   K+   ++  N  +WN    G    GK R  +D++ +M+R    +PD+ T+  L 
Sbjct: 301 NIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE--VKPDDLTFTALL 358

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C+ LG+   G+  F H L+                       GL   V   +C+ +++
Sbjct: 359 SACSHLGMVDEGWRCF-HSLQF---------------------YGLEPKVDHYACMVDIL 396

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW-- 204
                     R+G   EA  L R+M    V P+EV +  ++ +C+    L +   I    
Sbjct: 397 G---------RAGRIEEAEILMREMP---VPPNEVVLGSLLGSCSVHGKLEIAERIKREL 444

Query: 205 -YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
             +S       + ++N    MYV  G+ + A+ +  S+ N+ +
Sbjct: 445 IQMSPGHTEYQILMSN----MYVAEGRSDIADGLRGSLRNRGI 483


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/557 (34%), Positives = 314/557 (56%), Gaps = 34/557 (6%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  NL Y  K+   +   ++ +WN  I G+++ G   EA  L+  M+ + G +PD+ T+
Sbjct: 259 SKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMI-SAGVKPDSVTF 317

Query: 83  P-LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              L  +  S  LR    E+  ++++     D+Y+ +A+I V+   GD+ +A  +F ++ 
Sbjct: 318 ASFLPSILESGSLRHCK-EVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNI 376

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           + ++    ++I+G+V  G   +AI  FR +  E +  + +TM  ++ ACA +  L  G+E
Sbjct: 377 LVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKE 436

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H +I +  L   V + +A+ DMY KCG+L                              
Sbjct: 437 LHCHILKKRLENIVNVGSAITDMYAKCGRL------------------------------ 466

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            D+A + F  + ++  V WN++I  + Q  + + A+ LF +M  +G K D+V+    LSA
Sbjct: 467 -DLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSA 525

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
            + L AL  G  +H ++ +  F+ +  + + L+DMY+KCGN+A A  VF+ M  +N +++
Sbjct: 526 AANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSW 585

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
            +II     HG   + +  + EM+  G+ PD +TFL I+SAC H GLVDEG  YF  M+ 
Sbjct: 586 NSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTR 645

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + +  +++HY+CMVDL GR+G + EA   I+SMP   D  VWG L  ACRLHGNV + +
Sbjct: 646 EYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAK 705

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
            A+  LLELDP++SG YVLL+N++ D+  W    KVR +M+E+GV+K PG S I+VNG  
Sbjct: 706 LASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGT 765

Query: 562 YEFIVRDKSHPELEQIY 578
           + F   D +HPE  +IY
Sbjct: 766 HMFSAADGNHPESVEIY 782



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 214/468 (45%), Gaps = 34/468 (7%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
            + F ++   +  WN  IRG    G    A+  Y +ML      PD +T+P + K C  L
Sbjct: 67  NLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKML-GSNVSPDKYTFPYVIKACGGL 125

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               L   +      LGF VD++  +A+I ++   G +  A  VFDE  +R+ + WN ++
Sbjct: 126 NNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVML 185

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            G+V+SG    AI  F +M+      + VT   ++S CA   +   G ++H  +  SG  
Sbjct: 186 RGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFE 245

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +AN L+ MY KCG L  A ++F++M     V+   +I GY + GF D         
Sbjct: 246 FDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTD--------- 296

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                                 EA  LF+ M + G+KPD+VT    L +  + G+L    
Sbjct: 297 ----------------------EAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCK 334

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H +I +     +V L +AL+D+Y K G++  A ++F +    +    TA+I G  LHG
Sbjct: 335 EVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHG 394

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
             +DAI+ F  +I  G++ + +T   +L AC     +  G++    +    RL   +   
Sbjct: 395 LNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKK-RLENIVNVG 453

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           S + D+  + G L+ A +  R M    D V W ++  +   +G   I 
Sbjct: 454 SAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISSFSQNGKPEIA 500



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 177/359 (49%), Gaps = 32/359 (8%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WNV +RG++++G    A+  + +M R   +  ++ TY  +  +CA+ G    G ++ G V
Sbjct: 181 WNVMLRGYVKSGDFDNAIGTFCEM-RTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLV 239

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +  GF+ D  V N ++ ++  CG+L  A  +F+     + V+WN LI G+V++GF  EA 
Sbjct: 240 IGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAA 299

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LF  M    V+PD VT    + +  +   L   +E+H YI    +   V L +AL+D+Y
Sbjct: 300 PLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVY 359

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            K G +E A +IF   +   V  CT MI GY   G L+I                     
Sbjct: 360 FKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHG-LNI--------------------- 397

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
                    +A+  F  +   G+  +++T    L AC+ + AL  G  +H  I K+    
Sbjct: 398 ---------DAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLEN 448

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            V +G+A+ DMYAKCG +  A + F  M +R+S+ + ++I   + +GK   AI  F +M
Sbjct: 449 IVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQM 507



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 39/414 (9%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           LF+ C+   +     ++   V+  G        + V+ ++V CG    A N+F E  +R 
Sbjct: 17  LFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRY 76

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
            + WN +I G    G+   A+  +  M    V PD+ T   ++ AC  L ++ L   +H 
Sbjct: 77  ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHD 136

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
                G  + +   +AL+ +Y   G +  A  +FD +  +  +    M+ GY K G  D 
Sbjct: 137 TARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFD- 195

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                                          A+  F EM+ +    ++VT    LS C+ 
Sbjct: 196 ------------------------------NAIGTFCEMRTSYSMVNSVTYTCILSICAT 225

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
            G    G  +H  +    F  +  +   LV MY+KCGN+  A ++F+ MP+ +++T+  +
Sbjct: 226 RGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGL 285

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV---DEGRKYFAQMSS 441
           I G   +G   +A   F+ MI  G+ PD +TF   L +    G +    E   Y  +   
Sbjct: 286 IAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRV 345

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            F +  K    S ++D+  + G +E A ++ +   +  DV V  A+     LHG
Sbjct: 346 PFDVYLK----SALIDVYFKGGDVEMARKIFQQ-NILVDVAVCTAMISGYVLHG 394



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +  +++ G A + + A C       LD   +    + + +S  WN  I  F + GK   A
Sbjct: 446 LENIVNVGSAITDMYAKCG-----RLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIA 500

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +DL++QM  + G + D+ +        A+L   + G E+ G+V++  F  D +V + +I 
Sbjct: 501 IDLFRQMGMS-GAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLID 559

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  CG+L LA  VF+    +N VSWNS+I  +   G PRE + L+ +M    + PD VT
Sbjct: 560 MYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVT 619

Query: 183 MIGMVSACAQLEDLNLGREIHWY---ISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            + ++SAC     ++ G  IH++     E G+   +     ++D+Y + G++  A +   
Sbjct: 620 FLVIISACGHAGLVDEG--IHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIK 677

Query: 240 SM 241
           SM
Sbjct: 678 SM 679



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%)

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           + ++ +Y  CG    A  +F E+  R +L +  +I GL + G    A+ ++ +M+G  + 
Sbjct: 50  SRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVS 109

Query: 411 PDEITFLGILSACCHGGL--------VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           PD+ TF  ++ AC  GGL        V +  +       +F  S  +K Y+        +
Sbjct: 110 PDKYTFPYVIKAC--GGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYA-------DN 160

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           G + +A ++   +P+  D ++W  +     L G V  G+
Sbjct: 161 GYIRDARRVFDELPL-RDTILWNVM-----LRGYVKSGD 193


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/513 (35%), Positives = 289/513 (56%), Gaps = 34/513 (6%)

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133
           G   DN       + C++ G     Y +F H        + Y+HN +I           A
Sbjct: 42  GLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPC----PNTYLHNTMIR----------A 87

Query: 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
            ++ DE    ++                  AI ++R +     +PD  T   ++    ++
Sbjct: 88  LSLLDEPNAHSI------------------AITVYRKLWALCAKPDTFTFPFVLKIAVRV 129

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
            D+  GR+IH  +   G   +V +   L+ MY  CG L  A ++FD M+ K V     ++
Sbjct: 130 SDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALL 189

Query: 254 VGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
            GY K G +D AR + + +P   +  V W  +I GY ++ R+ EA+ +F  M    ++PD
Sbjct: 190 AGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPD 249

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
            VT +  LSAC+ LG+L+ G  I  +++    N  V L  A++DMYAK GNI KAL VF 
Sbjct: 250 EVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFE 309

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            + ERN +T+T II GLA HG   +A++ F+ M+  G+ P+++TF+ ILSAC H G VD 
Sbjct: 310 CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDL 369

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G++ F  M S + + P ++HY CM+DLLGR+G L EA+++I+SMP  A+  +WG+L  A 
Sbjct: 370 GKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAAS 429

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
            +H ++ +GERA  +L++L+P +SG Y+LLAN+Y +   W+E+  +R MM+  GV+K  G
Sbjct: 430 NVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAG 489

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
            SSIEV   +Y+FI  D +HP++E+I++ L ++
Sbjct: 490 ESSIEVENRVYKFISGDLTHPQVERIHEILQEM 522



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 200/429 (46%), Gaps = 72/429 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFL---ETG 57
           M ITGL       ++ I  C  S + +L Y   +  +   PN++  N  IR      E  
Sbjct: 38  MIITGLNRDNLNVAKFIEAC--SNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPN 95

Query: 58  KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
               A+ +Y++ L     +PD FT+P + K+   +   + G +I G V+  GFD  ++V 
Sbjct: 96  AHSIAITVYRK-LWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVV 154

Query: 118 NAVIHVFVSCGDLGLACNVFDE--------------------------------SC-VRN 144
             +I ++ SCG LG A  +FDE                                 C VRN
Sbjct: 155 TGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRN 214

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
            VSW  +I+G+ +SG   EAI +F+ M +E VEPDEVT++ ++SACA L  L LG  I  
Sbjct: 215 EVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICS 274

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           Y+   G+   V L NA++DMY K G +  A ++F+ +  + VV+ TT+I G A  G    
Sbjct: 275 YVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHG---- 330

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                                         EALA+F+ M   G++P+ VT +  LSACS 
Sbjct: 331 ---------------------------HGAEALAMFNRMVKAGVRPNDVTFIAILSACSH 363

Query: 325 LGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYT 382
           +G +D G  + +    K   + N+     ++D+  + G + +A +V   MP + N+  + 
Sbjct: 364 VGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWG 423

Query: 383 AIIGGLALH 391
           +++    +H
Sbjct: 424 SLLAASNVH 432


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/443 (39%), Positives = 277/443 (62%), Gaps = 4/443 (0%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ--LERVEPDEVTMIG 185
           G L  A +VF      N   + +LI GF  +  P E++ L+  M   L      E ++  
Sbjct: 55  GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ AC +L   + GR++H  + ++ L     + N+++ MY+  G++E A  +FD M N+ 
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VVS  +MI GY K G +++A+K+F+ + +K VV W ++I  YVQ +   +AL LF EM +
Sbjct: 175 VVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLS 234

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGTALVDMYAKCGNIA 364
            G++PD    V  LSA + LG +++G W+H ++      L+   +G+AL+DMY+KCG I 
Sbjct: 235 LGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIE 294

Query: 365 KALQVFHEMPERNSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            A  VF  +  R ++  + ++I GLA+HG A +A+  F EM  + + P+EITFLG+LS C
Sbjct: 295 NAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTC 354

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            HGGLV+EG+ YF  M   +++ P+++HY CM+DL GR+G LE+A  +I++MP  AD++ 
Sbjct: 355 SHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLA 414

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W A+  A   HG++ IG+ AA++ +EL P DS  YVLL+N+Y  +  W++  K+R MM +
Sbjct: 415 WKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQ 474

Query: 544 RGVEKTPGCSSIEVNGLLYEFIV 566
           RGV+K  GCSS+ VNG ++EF++
Sbjct: 475 RGVKKIAGCSSMLVNGKVHEFLL 497



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 221/460 (48%), Gaps = 74/460 (16%)

Query: 1   MTITGLISHGFAPSRLIAFCAISE-SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           M  T L++H F  SRLIAFC++S  S  LDY + +   +Q+PNSF +   I+GF +T   
Sbjct: 29  MIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNP 88

Query: 60  REAVDLYKQMLR----NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115
            E++ LY +ML     + G     F+ P + K C  L     G ++ G VLK     D +
Sbjct: 89  VESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPF 145

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG---------------- 159
           V N+++ +++  G++ LA  VFD    R++VSWNS+I G++++G                
Sbjct: 146 VGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKD 205

Query: 160 ---------------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
                           P +A+ LFR+M    + PD   ++ ++SA A L  +  G+ +H 
Sbjct: 206 VVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHA 265

Query: 205 YISESGLTLTVP-LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           Y+S + + L+   + +AL+DMY KCG +E+A  +F S+ ++                   
Sbjct: 266 YVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHR------------------- 306

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
             R I D         WN++I G      ++EAL +F EM+   I+P+ +T +  LS CS
Sbjct: 307 --RNIGD---------WNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCS 355

Query: 324 QLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTY 381
             G +++G  +     EK      +     ++D++ + G +  AL V   MP E + L +
Sbjct: 356 HGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAW 415

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            AI+     HG     I   + +  + L PD+ +   +LS
Sbjct: 416 KAILSASMKHGHI--EIGKSAALRAIELAPDDSSSYVLLS 453


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 305/547 (55%), Gaps = 35/547 (6%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            ++LF+ +   +  SWN  I G+ E G   E ++L+  M+R     PD  T   +   C 
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELF-SMMRELSVDPDLITMTTVASACE 310

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            L    LG  + G+V+K  F  D+ ++N++I ++ S G L  A  VF     +++VSW +
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I   V    P +A+  ++ M+LE + PDE+T++ ++SACA +  L+LG  +H    ++G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L   V ++N+L+DMY KC  +++A E+                               F 
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEV-------------------------------FR 459

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
           ++  K VV W ++I G     RS EAL  F +M+ + +KP++VT +  LSAC+++GAL  
Sbjct: 460 NISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMR 518

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH    +     +  L  A++DMY +CG    AL  F+   +++   +  ++ G A 
Sbjct: 519 GKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQ 577

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            G+A  A+  F +M+ + + PDEITF+ +L AC   G+V EG +YF  M + + L+P LK
Sbjct: 578 QGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLK 637

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY+C+VD+LGR+G L++A   I+ MP+  D  +WGAL  ACR+H NV +GE AA ++ E 
Sbjct: 638 HYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEK 697

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           D +  G Y+LL N+Y     W++  KVR +M ERG+   PGCS +E+ G ++ F+  D S
Sbjct: 698 DNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNS 757

Query: 571 HPELEQI 577
           H + ++I
Sbjct: 758 HSQSKEI 764



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/470 (31%), Positives = 241/470 (51%), Gaps = 40/470 (8%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           FSWNV + G+ + G   EA++LY +ML     RP+ +T+P + K CA +     G EI  
Sbjct: 164 FSWNVLVGGYAKAGCFDEALNLYHRMLW-AEIRPNVYTFPSVLKTCAGVSDIARGKEIHA 222

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           HV++ GF+ D+ V NA+I ++V CGD+  A  +FD+   R+ +SWN++I+G+  +G   E
Sbjct: 223 HVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLE 282

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
            + LF  M+   V+PD +TM  + SAC  L++  LGR +H Y+ +S     + + N+L+ 
Sbjct: 283 GLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQ 342

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY   G+LE AE +F  M +K VVS                               W A+
Sbjct: 343 MYSSLGRLEEAETVFSRMESKDVVS-------------------------------WTAM 371

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I   V  K   +A+  +  M+  GI PD +T V  LSAC+ +G LD GI +H    K   
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             +V++  +L+DMY+KC  +  AL+VF  +  +N +++T++I GL ++ ++ +A+ +F +
Sbjct: 432 VSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGR 461
           M    + P+ +T + +LSAC   G +  G++  A      R       +  + ++D+  R
Sbjct: 492 M-KESMKPNSVTLISVLSACARIGALMRGKEIHAHA---LRTGVGFDGFLPNAILDMYVR 547

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
            G   +   L +      DV  W  L       G   +      K+LEL+
Sbjct: 548 CG--RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 182/377 (48%), Gaps = 33/377 (8%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           NA++ +FV  G+L  A  VF +   R++ SWN L+ G+ ++G   EA+ L+  M    + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+  T   ++  CA + D+  G+EIH ++   G    V + NAL+ MYVKCG + +A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M  +  +S                               WNA+I GY +     E L
Sbjct: 256 FDKMPKRDRIS-------------------------------WNAMISGYFENGGGLEGL 284

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF  M+   + PD +T     SAC  L     G  +H ++ K  F  ++ +  +L+ MY
Sbjct: 285 ELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMY 344

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +  G + +A  VF  M  ++ +++TA+I  L  H     A+  +  M   G++PDEIT +
Sbjct: 345 SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLV 404

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +LSAC   G +D G +   +++    L   +   + ++D+  +   ++ A ++ R++  
Sbjct: 405 SVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNIS- 462

Query: 478 AADVVVWGALFFACRLH 494
             +VV W +L    R++
Sbjct: 463 GKNVVSWTSLILGLRIN 479



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 37/338 (10%)

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G   +A++    M   R+E +E   I ++  C      + G  ++  +S S   L V L 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NAL+ M+V+                               FG L  A  +F  + E+ V 
Sbjct: 136 NALLSMFVR-------------------------------FGNLLDAWYVFGKMSERDVF 164

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN ++GGY +A    EAL L+H M    I+P+  T    L  C+ +  +  G  IH  +
Sbjct: 165 SWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHV 224

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            +  F  +V +G AL+ MY KCG+I+ A  +F +MP+R+ +++ A+I G   +G  L+ +
Sbjct: 225 IRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGL 284

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMV 456
             FS M  + + PD IT   + SAC    L+D  R        + +      +   + ++
Sbjct: 285 ELFSMMRELSVDPDLITMTTVASAC---ELLDNERLGRGVHGYVVKSEFGGDISMNNSLI 341

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
            +    G LEEAE +   M  + DVV W A+  +   H
Sbjct: 342 QMYSSLGRLEEAETVFSRME-SKDVVSWTAMIASLVSH 378



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 154/381 (40%), Gaps = 86/381 (22%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL+SH    + LI     S+ K +D   ++  N+   N  SW   I G     +  EA+
Sbjct: 429 TGLVSHVIVSNSLIDM--YSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL 486

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             ++QM  +   +P++ T   +   CA +G    G EI  H L+ G   D ++ NA++ +
Sbjct: 487 LFFRQMKES--MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +V CG    A N F+ S  +++ +WN L+ G+ + G  + A+ LF  M    + PDE+T 
Sbjct: 545 YVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           I ++ AC+                                   K G +    E F+ M N
Sbjct: 604 ISLLCACS-----------------------------------KSGMVTEGLEYFNIMKN 628

Query: 244 KTVVS-------CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           K  ++       C   I+G A  G LD A     D+P                       
Sbjct: 629 KYNLTPNLKHYACVVDILGRA--GQLDDAYDFIQDMP----------------------- 663

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVD 355
                      I+PDA      L+AC     ++ G I   R  EK+N ++   +   L +
Sbjct: 664 -----------IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYI--LLCN 710

Query: 356 MYAKCGNIAKALQVFHEMPER 376
           +YA CGN  K  +V   M ER
Sbjct: 711 LYAGCGNWDKVSKVRSLMRER 731


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/473 (37%), Positives = 278/473 (58%), Gaps = 6/473 (1%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM--QLER 175
           N +I  +   G    A N+ D+    NLVS+NSLI+G    GF +E++ +F+ M  Q   
Sbjct: 84  NIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSN 143

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V  DE T++ +V +CA L    L R++H      GL   + + NAL+D Y KCG+ + + 
Sbjct: 144 VLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISF 203

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            IF  M  + VVS T+M+  YA+   L+ A  +F  + EK  V W A+I G+ Q  R  E
Sbjct: 204 SIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDE 263

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE---NFNLNVVLGTA 352
           AL LF +M+  GI P A T    LSAC+ L  +  G  IH  I +    ++  N+ +  A
Sbjct: 264 ALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNA 323

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           L+DMY KCG +  A  +F  M E++ +++ ++I G A +G   ++++ F  MI   + P+
Sbjct: 324 LIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPN 383

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
            +TFLG+LSACCH GLV EG +    M   + + P+  HY+ M+DLLGR+  LEEA  LI
Sbjct: 384 HVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLI 443

Query: 473 RSMPMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           +  P  +D V +WGAL  ACR+HGN+ +  RAA  L +L+P ++  YV++ N+Y  ++ W
Sbjct: 444 KRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRW 503

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +EA +VR++M ERG+ K   CS IEV    ++F+ +++SH ++ ++Y+ +  L
Sbjct: 504 DEARQVRRLMMERGLRKEAACSWIEVRNTRHQFVAKERSHCQINEVYEVIHNL 556



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 173/387 (44%), Gaps = 38/387 (9%)

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           L  ++P       ++S C     L LG+ +H +  ++ L  T  LAN L+D Y KC  ++
Sbjct: 7   LSSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQ 66

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           SA ++F  +  K   S   +I  Y++ G  + A  + D +P+  +V +N++I G      
Sbjct: 67  SAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGF 126

Query: 293 SKEALALFHEM--QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
            KE+L +F  M  Q + +  D  T V  + +C+ LGA +    +H        N N+++G
Sbjct: 127 RKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIG 186

Query: 351 TALVDMYAKCGNIAKALQVFHEMPER-------------------------------NSL 379
            AL+D Y KCG    +  +F  MPER                               N++
Sbjct: 187 NALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTV 246

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           ++TA+I G A +G+  +A+  F +M   G+ P   TF  +LSAC    L+  G++    +
Sbjct: 247 SWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHI 306

Query: 440 --SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF--FACRLHG 495
             S+       +   + ++D+  + G +  A  L + M    D+V W +L   FA   HG
Sbjct: 307 IRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGM-HEKDIVSWNSLITGFAQNGHG 365

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLA 522
             S+     M   ++ P       LL+
Sbjct: 366 EESLAVFERMIEADIRPNHVTFLGLLS 392



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 183/415 (44%), Gaps = 69/415 (16%)

Query: 17  IAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN-GGT 75
           I   A S S   +    +L  +  PN  S+N  I G    G  +E+++++K ML+     
Sbjct: 85  IIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNV 144

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
             D FT   L   CASLG   L  ++ G  + +G + ++ + NA+I  +  CG+  ++ +
Sbjct: 145 LFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFS 204

Query: 136 VFDESCVRNLVSWNS-------------------------------LINGFVRSGFPREA 164
           +F     R++VSW S                               LI GF ++G   EA
Sbjct: 205 IFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEA 264

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT---LTVPLANAL 221
           + LF  M+ E + P   T   ++SACA L  +  G+EIH +I  S        + + NAL
Sbjct: 265 LHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNAL 324

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG++ SA  +F  M  K +VS  ++I G+A+ G                     
Sbjct: 325 IDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNG--------------------- 363

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                       +E+LA+F  M    I+P+ VT +  LSAC   G + +G+ I   +EK+
Sbjct: 364 ----------HGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKD 413

Query: 342 NFNLNVVLGTA-LVDMYAKCGNIAKALQVFHEMPERNSLT--YTAIIGGLALHGK 393
                     A ++D+  +   + +A+ +    P+ +     + A++G   +HG 
Sbjct: 414 YGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGN 468



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 29/334 (8%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A +++  L+    +   +Q  N+ SW   I GF + G+  EA+ L++QM R  G  P  F
Sbjct: 223 AYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQM-REEGIPPSAF 281

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLK---LGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           T+  +   CA L L   G EI GH+++   + +  ++++ NA+I ++  CG +  A  +F
Sbjct: 282 TFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLF 341

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
                +++VSWNSLI GF ++G   E++ +F  M    + P+ VT +G++SAC     ++
Sbjct: 342 KGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVS 401

Query: 198 LG-REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT-VVSCTTMIVG 255
            G R +     + G+         ++D+  +  +LE A  +       +  V     ++G
Sbjct: 402 EGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLG 461

Query: 256 YAKF-GFLDIARK----IFDDLP---EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
             +  G +D+AR+    +F   P    +YV+ +N     Y  A R  EA  +   M   G
Sbjct: 462 ACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNI----YAAASRWDEARQVRRLMMERG 517

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           ++ +A        ACS +   +     H+F+ KE
Sbjct: 518 LRKEA--------ACSWIEVRNTR---HQFVAKE 540


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/417 (39%), Positives = 262/417 (62%), Gaps = 28/417 (6%)

Query: 173 LERVE-PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
           LER + P++ T   ++ ACA + +LNLG+ +H  + + G    V + N L+ MY  C   
Sbjct: 2   LERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGG 61

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           E                           G ++ ARK+FD++ +   V W+A+IGGYV+  
Sbjct: 62  E---------------------------GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVG 94

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           RS +A+ LF EMQ  G+ PD +T V  LSAC+ LGAL+ G W+  ++EKE    NV L  
Sbjct: 95  RSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSN 154

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           AL+DM+AKCG++ KA  +F  M ERN +++T++IGGLA+HG+ ++A++ F EM+  G+ P
Sbjct: 155 ALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTP 214

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           D++ F+G+LSAC H GLVD+G++YF  M   F + PK++HY CMVD+L R+GL++EA + 
Sbjct: 215 DDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKF 274

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531
           ++ MP+  + VVW  L  ACR HG + +GE+   +L+  +P     YVLL+N+Y   + W
Sbjct: 275 VQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDW 334

Query: 532 EEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           E+  ++R+ M+ +G++K PG + IE++  +YEF+  DKSH + ++IY+ + ++ +  
Sbjct: 335 EKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEM 391



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 170/326 (52%), Gaps = 43/326 (13%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC----GDLGL 132
           P+ FTYP + K CA +G   LG  + G V+K GF  ++ V N ++H++  C    G +  
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFDE    + VSW+++I G+VR G   +AI LFR+MQ++ V PDE+TM+ ++SAC  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L  L LG+ +  Y+ +  +   V L+NAL+DM+ KCG ++ A  +F SM  + +VS    
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS---- 183

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
                                      W ++IGG     R  EA+A+F EM  +G+ PD 
Sbjct: 184 ---------------------------WTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDD 216

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQ 368
           V  +  LSACS  G +D G    R+ +    + ++V        +VDM  + G + +AL+
Sbjct: 217 VVFIGLLSACSHSGLVDKG---KRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALK 273

Query: 369 VFHEMP-ERNSLTYTAIIGGLALHGK 393
              EMP + N + +  +I     HG+
Sbjct: 274 FVQEMPIDPNPVVWRTLINACRAHGE 299



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 3/255 (1%)

Query: 20  CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN 79
           C       +++  K+   +   +S SW+  I G++  G+  +A++L+++M +  G  PD 
Sbjct: 57  CCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREM-QIKGVCPDE 115

Query: 80  FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE 139
            T   +   C  LG   LG  +  +V K     ++ + NA+I +F  CGD+  A N+F  
Sbjct: 116 ITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRS 175

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              RN+VSW S+I G    G   EA+ +F +M    V PD+V  IG++SAC+    ++ G
Sbjct: 176 MRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKG 235

Query: 200 REIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYA 257
           +     + +   +   +     ++DM  + G ++ A +    M ++   V   T+I    
Sbjct: 236 KRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACR 295

Query: 258 KFGFLDIARKIFDDL 272
             G L +  KI   L
Sbjct: 296 AHGELKLGEKITRQL 310


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 305/547 (55%), Gaps = 35/547 (6%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            ++LF+ +   +  SWN  I G+ E G   E ++L+  M+R     PD  T   +   C 
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELF-SMMRELSVDPDLITMTTVASACE 310

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150
            L    LG  + G+V+K  F  D+ ++N++I ++ S G L  A  VF     +++VSW +
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I   V    P +A+  ++ M+LE + PDE+T++ ++SACA +  L+LG  +H    ++G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           L   V ++N+L+DMY KC  +++A E+                               F 
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEV-------------------------------FR 459

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
           ++  K VV W ++I G     RS EAL  F +M+ + +KP++VT +  LSAC+++GAL  
Sbjct: 460 NISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMR 518

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  IH    +     +  L  A++DMY +CG    AL  F+   +++   +  ++ G A 
Sbjct: 519 GKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQ 577

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            G+A  A+  F +M+ + + PDEITF+ +L AC   G+V EG +YF  M + + L+P LK
Sbjct: 578 QGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLK 637

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HY+C+VD+LGR+G L++A   I+ MP+  D  +WGAL  ACR+H NV +GE AA ++ E 
Sbjct: 638 HYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEK 697

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
           D +  G Y+LL N+Y     W++  KVR +M ERG+   PGCS +E+ G ++ F+  D S
Sbjct: 698 DNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNS 757

Query: 571 HPELEQI 577
           H + ++I
Sbjct: 758 HSQSKEI 764



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/470 (31%), Positives = 241/470 (51%), Gaps = 40/470 (8%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           FSWNV + G+ + G   EA++LY +ML     RP+ +T+P + K CA +     G EI  
Sbjct: 164 FSWNVLVGGYAKAGCFDEALNLYHRMLW-AEIRPNVYTFPSVLKTCAGVSDIARGKEIHA 222

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           HV++ GF+ D+ V NA+I ++V CGD+  A  +FD+   R+ +SWN++I+G+  +G   E
Sbjct: 223 HVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLE 282

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
            + LF  M+   V+PD +TM  + SAC  L++  LGR +H Y+ +S     + + N+L+ 
Sbjct: 283 GLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQ 342

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
           MY   G+LE AE +F  M +K VVS                               W A+
Sbjct: 343 MYSSLGRLEEAETVFSRMESKDVVS-------------------------------WTAM 371

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I   V  K   +A+  +  M+  GI PD +T V  LSAC+ +G LD GI +H    K   
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
             +V++  +L+DMY+KC  +  AL+VF  +  +N +++T++I GL ++ ++ +A+ +F +
Sbjct: 432 VSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGR 461
           M    + P+ +T + +LSAC   G +  G++  A      R       +  + ++D+  R
Sbjct: 492 M-KESMKPNSVTLISVLSACARIGALMRGKEIHAHA---LRTGVGFDGFLPNAILDMYVR 547

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
            G   +   L +      DV  W  L       G   +      K+LEL+
Sbjct: 548 CG--RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 182/377 (48%), Gaps = 33/377 (8%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           NA++ +FV  G+L  A  VF +   R++ SWN L+ G+ ++G   EA+ L+  M    + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P+  T   ++  CA + D+  G+EIH ++   G    V + NAL+ MYVKCG + +A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           FD M  +  +S                               WNA+I GY +     E L
Sbjct: 256 FDKMPKRDRIS-------------------------------WNAMISGYFENGGGLEGL 284

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            LF  M+   + PD +T     SAC  L     G  +H ++ K  F  ++ +  +L+ MY
Sbjct: 285 ELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMY 344

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +  G + +A  VF  M  ++ +++TA+I  L  H     A+  +  M   G++PDEIT +
Sbjct: 345 SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLV 404

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +LSAC   G +D G +   +++    L   +   + ++D+  +   ++ A ++ R++  
Sbjct: 405 SVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNIS- 462

Query: 478 AADVVVWGALFFACRLH 494
             +VV W +L    R++
Sbjct: 463 GKNVVSWTSLILGLRIN 479



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 37/338 (10%)

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G   +A++    M   R+E +E   I ++  C      + G  ++  +S S   L V L 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NAL+ M+V+                               FG L  A  +F  + E+ V 
Sbjct: 136 NALLSMFVR-------------------------------FGNLLDAWYVFGKMSERDVF 164

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            WN ++GGY +A    EAL L+H M    I+P+  T    L  C+ +  +  G  IH  +
Sbjct: 165 SWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHV 224

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            +  F  +V +G AL+ MY KCG+I+ A  +F +MP+R+ +++ A+I G   +G  L+ +
Sbjct: 225 IRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGL 284

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMV 456
             FS M  + + PD IT   + SAC    L+D  R        + +      +   + ++
Sbjct: 285 ELFSMMRELSVDPDLITMTTVASAC---ELLDNERLGRGVHGYVVKSEFGGDISMNNSLI 341

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
            +    G LEEAE +   M  + DVV W A+  +   H
Sbjct: 342 QMYSSLGRLEEAETVFSRME-SKDVVSWTAMIASLVSH 378



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 154/381 (40%), Gaps = 86/381 (22%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           TGL+SH    + LI     S+ K +D   ++  N+   N  SW   I G     +  EA+
Sbjct: 429 TGLVSHVIVSNSLIDM--YSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL 486

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             ++QM  +   +P++ T   +   CA +G    G EI  H L+ G   D ++ NA++ +
Sbjct: 487 LFFRQMKES--MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +V CG    A N F+ S  +++ +WN L+ G+ + G  + A+ LF  M    + PDE+T 
Sbjct: 545 YVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           I ++ AC+                                   K G +    E F+ M N
Sbjct: 604 ISLLCACS-----------------------------------KSGMVTEGLEYFNIMKN 628

Query: 244 KTVVS-------CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           K  ++       C   I+G A  G LD A     D+P                       
Sbjct: 629 KYNLTPNLKHYACVVDILGRA--GQLDDAYDFIQDMP----------------------- 663

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVD 355
                      I+PDA      L+AC     ++ G I   R  EK+N ++   +   L +
Sbjct: 664 -----------IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYI--LLCN 710

Query: 356 MYAKCGNIAKALQVFHEMPER 376
           +YA CGN  K  +V   M ER
Sbjct: 711 LYAGCGNWDKVSKVRSLMRER 731


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/537 (35%), Positives = 295/537 (54%), Gaps = 35/537 (6%)

Query: 45   SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLRFLGYEIFG 103
            SWN  I G   +G    +V ++  +LR+    PD FT   + + C+SL G  +L  +I  
Sbjct: 1003 SWNTMISGCTLSGLEECSVGMFVHLLRDS-LLPDQFTVASVLRACSSLEGGYYLATQIHA 1061

Query: 104  HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-FPR 162
              +K G  +D +V  A+I V+   G +  A  +F      +L SWN++++G++ SG FP+
Sbjct: 1062 CAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPK 1121

Query: 163  EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
             A+RL+  MQ      D++T++    A   L  L  G++IH  + + G  L + + + ++
Sbjct: 1122 -ALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVL 1180

Query: 223  DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
            DMY+KCG++ESA                               R++F ++P    V W  
Sbjct: 1181 DMYLKCGEMESA-------------------------------RRVFSEIPSPDDVAWTT 1209

Query: 283  IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
            +I G V+  + + AL  +H+M+ + ++PD  T    + ACS L AL+ G  IH  I K N
Sbjct: 1210 MISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLN 1269

Query: 343  FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
               +  + T+LVDMYAKCGNI  A  +F     R   ++ A+I GLA HG A +A+ +F 
Sbjct: 1270 CAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFK 1329

Query: 403  EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
             M   G+MPD +TF+G+LSAC H GLV E  + F  M   + + P+++HYSC+VD L R+
Sbjct: 1330 YMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRA 1389

Query: 463  GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
            G +EEAE++I SMP  A   ++  L  ACR+  +   G+R A KLL L+P DS  YVLL+
Sbjct: 1390 GRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLS 1449

Query: 523  NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
            N+Y  +N WE     R MM +  V+K PG S +++   ++ F+  D+SH E + IY+
Sbjct: 1450 NVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYN 1506



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 221/527 (41%), Gaps = 109/527 (20%)

Query: 46   WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV--CASLGLRFLGYEIFG 103
            WNV ++ +++T    EA+ L+ +  R G  RPD+ T   L +V  C    L    ++ + 
Sbjct: 829  WNVMMKAYVDTCLEYEAMLLFSEFHRTG-FRPDDVTLRTLSRVVKCKKNILELKQFKAYA 887

Query: 104  HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
              L + +D D                              +++ WN  ++ F++ G   E
Sbjct: 888  TKLFM-YDDDG----------------------------SDVIVWNKALSRFLQRGEAWE 918

Query: 164  AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
            A+  F DM   RV  D +T + M++  A L  L LG++IH  +  SGL   V + N L++
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLIN 978

Query: 224  MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF------DDLPEKYV 277
            MYVK G +  A  +F  M    ++S  TMI G    G  + +  +F        LP+++ 
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFT 1038

Query: 278  VPW-----NAIIGGY---------------------------VQAKRSK--EALALF--- 300
            V       +++ GGY                           V +KR K  EA  LF   
Sbjct: 1039 VASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQ 1098

Query: 301  ------------HEMQATGIKPDA----------------VTTVHCLSACSQLGALDDGI 332
                        H    +G  P A                +T V+   A   L  L  G 
Sbjct: 1099 DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGK 1158

Query: 333  WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
             IH  + K  FNL++ + + ++DMY KCG +  A +VF E+P  + + +T +I G   +G
Sbjct: 1159 QIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENG 1218

Query: 393  KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
            +   A+  + +M    + PDE TF  ++ AC     +++GR+  A   +I +L+     +
Sbjct: 1219 QEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHA---NIVKLNCAFDPF 1275

Query: 453  --SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
              + +VD+  + G +E+A  L +       +  W A+      HGN 
Sbjct: 1276 VMTSLVDMYAKCGNIEDARGLFKRTN-TRRIASWNAMIVGLAQHGNA 1321



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 199/468 (42%), Gaps = 56/468 (11%)

Query: 97   LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES--CVRNLVSWNSLING 154
            LG      +L  G   D +V N +I ++  CG L  A  +FD +    R+LV+WN++++ 
Sbjct: 674  LGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSA 733

Query: 155  F-VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
                +    +   LFR ++   V     T+  +   C      +    +H Y  + GL  
Sbjct: 734  LAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQW 793

Query: 214  TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY--------AKFGFLDIA 265
             V +A AL+++Y K G +  A  +FD M  + VV    M+  Y        A   F +  
Sbjct: 794  DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFH 853

Query: 266  RKIF--DDLPEKY---------------------------------VVPWNAIIGGYVQA 290
            R  F  DD+  +                                  V+ WN  +  ++Q 
Sbjct: 854  RTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQR 913

Query: 291  KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
              + EA+  F +M  + +  D +T V  L+  + L  L+ G  IH  + +   +  V +G
Sbjct: 914  GEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVG 973

Query: 351  TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
              L++MY K G++++A  VF +M E + +++  +I G  L G    ++  F  ++   L+
Sbjct: 974  NCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLL 1033

Query: 411  PDEITFLGILSACC--HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
            PD+ T   +L AC    GG     + +   M +   L   +   + ++D+  + G +EEA
Sbjct: 1034 PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVS--TALIDVYSKRGKMEEA 1091

Query: 469  EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
            E L  +     D+  W A+     +HG +  G+      L +  Q+SG
Sbjct: 1092 EFLFVNQD-GFDLASWNAI-----MHGYIVSGDFPKALRLYILMQESG 1133



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 122/548 (22%), Positives = 221/548 (40%), Gaps = 67/548 (12%)

Query: 6    LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNS--FSWNVAIRGFL-ETGKM 59
            +++ G  P R +    I+   +  +L    K+     + N    +WN  +        K 
Sbjct: 682  ILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKS 741

Query: 60   REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
             +   L++ +LR         T   +FK+C           + G+ +K+G   D++V  A
Sbjct: 742  HDGFHLFR-LLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGA 800

Query: 120  VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
            +++++   G +  A  +FD   VR++V WN ++  +V +    EA+ LF +       PD
Sbjct: 801  LVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPD 860

Query: 180  EVTM--IGMVSACA----QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
            +VT+  +  V  C     +L+         +   + G  + V   N  +  +++ G+   
Sbjct: 861  DVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIV--WNKALSRFLQRGEAWE 918

Query: 234  AEEIFDSMVNK-------TVVSCTTMIVG------------------------------- 255
            A + F  M+N        T V   T++ G                               
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLIN 978

Query: 256  -YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
             Y K G +  AR +F  + E  ++ WN +I G   +   + ++ +F  +    + PD  T
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFT 1038

Query: 315  TVHCLSACSQL-GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
                L ACS L G       IH    K    L+  + TAL+D+Y+K G + +A  +F   
Sbjct: 1039 VASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQ 1098

Query: 374  PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
               +  ++ AI+ G  + G    A+  +  M   G   D+IT +    A   GGLV  G 
Sbjct: 1099 DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAA--GGLV--GL 1154

Query: 434  KYFAQMSSI-----FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
            K   Q+ ++     F L   L   S ++D+  + G +E A ++   +P + D V W  + 
Sbjct: 1155 KQGKQIHAVVVKRGFNLD--LFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMI 1211

Query: 489  FACRLHGN 496
              C  +G 
Sbjct: 1212 SGCVENGQ 1219



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 34/225 (15%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           DL+LG+  H  I  SG      + N L+ MY KCG L SA                    
Sbjct: 671 DLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSA-------------------- 710

Query: 255 GYAKFGFLDIARKIFDDLPE--KYVVPWNAIIGGY-VQAKRSKEALALFHEMQATGIKPD 311
                      RK+FD  P+  + +V WNAI+      A +S +   LF  ++ + +   
Sbjct: 711 -----------RKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTT 759

Query: 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
             T       C    +      +H +  K     +V +  ALV++YAK G I +A  +F 
Sbjct: 760 RHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFD 819

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
            M  R+ + +  ++          +A+  FSE    G  PD++T 
Sbjct: 820 GMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 309/556 (55%), Gaps = 41/556 (7%)

Query: 39  QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
            N N F++N  I GFL     + A+ LY QM R+ G  PD FT+P + + C      F+ 
Sbjct: 93  HNKNVFAYNALIAGFLANALPQRALALYNQM-RHLGIAPDKFTFPCVIRACGDDDDGFVV 151

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
            +I G + K+G ++D++V +A+++ ++    +G A  VF+E  VR++V WN+++NGF + 
Sbjct: 152 TKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQI 211

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G   EA+ +FR M    V P   T+ G++S  + + D + GR +H ++++ G    V ++
Sbjct: 212 GRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS 271

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           NAL+DMY KC  +  A  +F+ M                                E  + 
Sbjct: 272 NALIDMYGKCKCVGDALSVFEMM-------------------------------DEIDIF 300

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
            WN+I+  + +       L LF  M  +  ++PD VT    L AC+ L AL  G  IH +
Sbjct: 301 SWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGY 360

Query: 338 I--------EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
           +        E  +   +V+L  AL+DMYAKCGN+  A  VF  M E++  ++  +I G  
Sbjct: 361 MVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYG 420

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
           +HG   +A+  FS M    ++P+EI+F+G+LSAC H G+V EG  + ++M S + +SP +
Sbjct: 421 MHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSI 480

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
           +HY+C++D+L R+G L EA  L+ +MP  AD V W +L  ACRLH +  + E AA K++E
Sbjct: 481 EHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIE 540

Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
           L+P   G YVL++N+Y     +EE  + R  M+++ V+K PGCS IE+   ++ FI  D+
Sbjct: 541 LEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDR 600

Query: 570 SHPELEQIYDCLVQLT 585
           +HP+ E IY  L  LT
Sbjct: 601 THPQTEYIYAGLNSLT 616



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 39/313 (12%)

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMDMYVKCGKLESAEEI 237
           D  T I  + +CA   +L+ G+E+H ++ ++      PLA  +L++MY KC  ++ +  +
Sbjct: 28  DLGTCIATLQSCAHNANLSKGKELHTHLLKNAF-FGSPLAITSLINMYSKCSLIDHSLRV 86

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F+                             F     K V  +NA+I G++     + AL
Sbjct: 87  FN-----------------------------FPTHHNKNVFAYNALIAGFLANALPQRAL 117

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI---WIHRFIEKENFNLNVVLGTALV 354
           AL+++M+  GI PD  T    + AC   G  DDG     IH  + K    L+V +G+ALV
Sbjct: 118 ALYNQMRHLGIAPDKFTFPCVIRAC---GDDDDGFVVTKIHGLMFKVGLELDVFVGSALV 174

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           + Y K   + +A +VF E+P R+ + + A++ G A  G+  +A+  F  M G G++P   
Sbjct: 175 NTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRY 234

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           T  G+LS     G  D GR     ++ +   S  +   + ++D+ G+   + +A  +   
Sbjct: 235 TVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS-NALIDMYGKCKCVGDALSVFEM 293

Query: 475 MPMAADVVVWGAL 487
           M    D+  W ++
Sbjct: 294 MD-EIDIFSWNSI 305


>gi|414884271|tpg|DAA60285.1| TPA: hypothetical protein ZEAMMB73_421255 [Zea mays]
          Length = 686

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 302/558 (54%), Gaps = 26/558 (4%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +NV I   L  G  R A+  Y++M+      PD FTYP + + CA      LG  +    
Sbjct: 126 YNVLISACLNHGLPRHALAAYQKMVDKDAVPPDAFTYPKVLRACAETADLVLGRAVHVRA 185

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
              G D  ++  NA++ ++  CGDL  A  VFD    R++VSWNS+I+G+  SG  REA+
Sbjct: 186 AAAGMDGHLFFQNALVSMYAKCGDLAAARRVFDGMDNRDVVSWNSMISGYAASGQWREAV 245

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLED----LNLGREIHWYISESGLTLTVPLANAL 221
            LFR MQ E  E + VT   +     Q+ D    L L R++    +E      V  +NA 
Sbjct: 246 ELFRQMQAEGAEANSVTWNTIAGGYIQMRDYRAALGLIRDMVRGGAEVDFVTLVIGSNAC 305

Query: 222 MDMYVKCGKLESAEEI-----------FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
                + G L   +EI            DS+VN        +I  YA+   ++ A  +F 
Sbjct: 306 ----SRAGWLRLGKEIHGLAVRMQCHEIDSVVN-------AVITMYARCNDMERALMLFR 354

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
            +    +V WN ++ G+     ++ A  LF EM  + ++P+ VT V  L+ C+++  L  
Sbjct: 355 TMRCPGLVAWNTMLAGFALLDDAEAASRLFREMVCSDVQPNYVTVVTYLALCARVANLQH 414

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  +H  I ++ F    +L  +L+DMY+K G ++ A  VF  M +R+ +++T++I G  +
Sbjct: 415 GQELHAHIIRQGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGM 474

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
            GK + ++ +F +MI  G+MPD I  + +LSAC H GLVDEG + F +M S + + P+++
Sbjct: 475 QGKGIVSLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFDKMVSSYGIKPQME 534

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
           HYSCMVDL  R+GLLE+AE+L+   P      +  AL  AC   GNV IGER+A +LLE+
Sbjct: 535 HYSCMVDLYARAGLLEKAEELLNQTPFPPTSTMVAALVGACHEQGNVIIGERSARRLLEM 594

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKS 570
             +++G YVL+ANMY  +  W E   VRK+M + GV K PG +  ++      F+V D+S
Sbjct: 595 KTENAGHYVLIANMYAAAGCWNELATVRKLMRDMGVMKAPGLAWADLGNGFTPFLVGDRS 654

Query: 571 HPELEQIYDCLVQLTRHF 588
           +P   +IY+ L +LT   
Sbjct: 655 NPLAPEIYEVLDELTEQM 672



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 35/348 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           NS +WN    G+++    R A+ L + M+R GG   D  T  +    C+  G   LG EI
Sbjct: 259 NSVTWNTIAGGYIQMRDYRAALGLIRDMVR-GGAEVDFVTLVIGSNACSRAGWLRLGKEI 317

Query: 102 FGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
            G  +++   ++D  V NAVI ++  C D+  A  +F       LV+WN+++ GF     
Sbjct: 318 HGLAVRMQCHEIDSVV-NAVITMYARCNDMERALMLFRTMRCPGLVAWNTMLAGFALLDD 376

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
              A RLFR+M    V+P+ VT++  ++ CA++ +L  G+E+H +I   G      L N+
Sbjct: 377 AEAASRLFREMVCSDVQPNYVTVVTYLALCARVANLQHGQELHAHIIRQGFKRYCLLWNS 436

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMY K G+L  A+ +FD+M ++ ++S T+MI GY   G              K +V  
Sbjct: 437 LIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGMQG--------------KGIV-- 480

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIE 339
                          +L  F +M  +GI PDA+  V  LSACS  G +D+G  +  + + 
Sbjct: 481 ---------------SLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFDKMVS 525

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
                  +   + +VD+YA+ G + KA ++ ++ P   + T  A + G
Sbjct: 526 SYGIKPQMEHYSCMVDLYARAGLLEKAEELLNQTPFPPTSTMVAALVG 573



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P   +WN  + GF        A  L+++M+ +   +P+  T      +CA +     G E
Sbjct: 359 PGLVAWNTMLAGFALLDDAEAASRLFREMVCS-DVQPNYVTVVTYLALCARVANLQHGQE 417

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           +  H+++ GF     + N++I ++   G L +A NVFD    R+++S+ S+I G+   G 
Sbjct: 418 LHAHIIRQGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGMQGK 477

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLAN 219
              ++R F+ M    + PD + M+ ++SAC+    ++ G E+    +S  G+   +   +
Sbjct: 478 GIVSLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFDKMVSSYGIKPQMEHYS 537

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            ++D+Y + G LE AEE+    +N+T    T+ +V 
Sbjct: 538 CMVDLYARAGLLEKAEEL----LNQTPFPPTSTMVA 569


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 305/556 (54%), Gaps = 33/556 (5%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + LF+ +   N  SW+  + G+L  G++ E + L++ ++      P+ + + ++   C
Sbjct: 79  CARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCC 138

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           A  G    G +  G++LK G  +  YV NA+IH++  C  +  A  + D     ++ S+N
Sbjct: 139 ADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYN 198

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
           S+++  V SG   EA ++ + M  E V  D VT + ++  CAQ+ DL LG +IH  + ++
Sbjct: 199 SILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKT 258

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           GL   V +++ L+D Y KCG++ +A                               RK F
Sbjct: 259 GLVFDVFVSSTLIDTYGKCGEVLNA-------------------------------RKQF 287

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D L ++ VV W A++  Y+Q    +E L LF +M+    +P+  T    L+AC+ L AL 
Sbjct: 288 DGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALA 347

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  +H  I    F  ++++G AL++MY+K GNI  +  VF  M  R+ +T+ A+I G +
Sbjct: 348 YGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYS 407

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            HG    A+  F +M+  G  P+ +TF+G+LSAC H  LV EG  YF Q+   F + P L
Sbjct: 408 HHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGL 467

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLL 508
           +HY+CMV LLGR+GLL+EAE  +++      DVV W  L  AC +H N ++G++    ++
Sbjct: 468 EHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVI 527

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           ++DP D G Y LL+NM+  +  W+   K+RK+M+ER ++K PG S +++    + F+   
Sbjct: 528 QMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEG 587

Query: 569 KSHPELEQIYDCLVQL 584
            +HPE  QI++ + QL
Sbjct: 588 SNHPESTQIFEKVQQL 603



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 189/407 (46%), Gaps = 59/407 (14%)

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D D+   N++I+++  CG    A  +FD    RN+VSW++L+ G++  G   E + LFR+
Sbjct: 58  DSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRN 117

Query: 171 M-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
           +  L+   P+E     ++S CA    +  G++ H Y+ +SGL L   + NAL+ MY +C 
Sbjct: 118 LVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCF 177

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            ++SA +I D+                               +P   V  +N+I+   V+
Sbjct: 178 HVDSAMQILDT-------------------------------VPGDDVFSYNSILSALVE 206

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           +    EA  +   M    +  D+VT V  L  C+Q+  L  G+ IH  + K     +V +
Sbjct: 207 SGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFV 266

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
            + L+D Y KCG +  A + F  + +RN + +TA++     +G   + ++ F++M     
Sbjct: 267 SSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDT 326

Query: 410 MPDEITFLGILSACC-----------HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
            P+E TF  +L+AC            HG +V  G K    +             + ++++
Sbjct: 327 RPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVG------------NALINM 374

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
             +SG ++ +  +  +M M  DV+ W A+      HG   +G++A +
Sbjct: 375 YSKSGNIDSSYNVFSNM-MNRDVITWNAMICGYSHHG---LGKQALL 417



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 165/338 (48%), Gaps = 34/338 (10%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL+ H +  + LI     S   ++D   +IL  V   + FS+N  +   +E+G   EA 
Sbjct: 157 SGLLLHQYVKNALIHM--YSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAA 214

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            + K+M+ +     D+ TY  +  +CA +    LG +I   +LK G   D++V + +I  
Sbjct: 215 QVLKRMV-DECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDT 273

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  CG++  A   FD    RN+V+W +++  ++++G   E + LF  M+LE   P+E T 
Sbjct: 274 YGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTF 333

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             +++ACA L  L  G  +H  I  SG    + + NAL++MY K G ++S+  +F +M+N
Sbjct: 334 AVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMN 393

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           + V++   MI GY+  G                                 K+AL +F +M
Sbjct: 394 RDVITWNAMICGYSHHGL-------------------------------GKQALLVFQDM 422

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            + G  P+ VT +  LSAC  L  + +G +    I K+
Sbjct: 423 MSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKK 460



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++G  +H    + LI     S+S N+D    +  N+ N +  +WN  I G+   G  +
Sbjct: 356 IVMSGFKNHLIVGNALINM--YSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGK 413

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD--MYVHN 118
           +A+ +++ M+ + G  P+  T+  +   C  L L   G+  F  ++K  FDV+  +  + 
Sbjct: 414 QALLVFQDMM-SAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMK-KFDVEPGLEHYT 471

Query: 119 AVIHVFVSCGDLGLACNVFDESC-VR-NLVSWNSLING 154
            ++ +    G L  A N    +  V+ ++V+W +L+N 
Sbjct: 472 CMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNA 509


>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
          Length = 532

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 271/464 (58%), Gaps = 3/464 (0%)

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
           S GD+  +  +F +     + +WNS+I GF +   P  ++ +F  M    V PD +T   
Sbjct: 51  SWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPF 110

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           +  A A+L +L L   +H  I++ GL     +AN+L+ MY  CG + SA ++FD M+ + 
Sbjct: 111 VAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRN 170

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
            VS   M+ GYAK G LD A ++F  +P++ VV W+++I G V+      ALA+F  M+ 
Sbjct: 171 SVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRV 230

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G K + VT V  L AC+ LGAL+ G  +H+++        +VL T+L+DMYAKCG I +
Sbjct: 231 VGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEE 290

Query: 366 ALQVFHEMP--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           A+ VF  +P  + + L +  IIGGLA HG   +++  F EM  +G++PDEIT+L + SAC
Sbjct: 291 AIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSAC 350

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            HGGLV E   +F  +     + PK +HY+CMVD+L R+G L EA   I  MPM     +
Sbjct: 351 AHGGLVHEAWHFFKSLGKQ-GMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASM 409

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
            GAL   C  H    + ER   KL+EL+P   G Y+ L+N+Y    +W+ A  +R+ ME 
Sbjct: 410 LGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMER 469

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           RGV+K+PG S +EV G L+ FI  DK+H +LE+IY  L  + R 
Sbjct: 470 RGVKKSPGFSFVEVLGTLHRFIAHDKTHNDLEKIYMMLNTIVRQ 513



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 196/422 (46%), Gaps = 62/422 (14%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL  H    SRL++F AIS   ++D+  +I   + +P   +WN  IRGF +      +V
Sbjct: 31  SGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSV 90

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            ++ +MLR G   PD+ TYP + K  A L    L   +   + K G   D ++ N++IH+
Sbjct: 91  SVFVKMLRFG-VCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHM 149

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-----------FPRE--------- 163
           + SCGD+G A  VFDE  +RN VSWN++++G+ + G            P           
Sbjct: 150 YGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMI 209

Query: 164 -----------AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
                      A+ +F  M++   + + VTM+ ++ ACA L  L  GR +H Y+ ++ + 
Sbjct: 210 DGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMR 269

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            T+ L  +LMDMY KCG +E A  +F  +                              +
Sbjct: 270 FTLVLRTSLMDMYAKCGAIEEAIAVFRGV-----------------------------PM 300

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            +  V+ WN IIGG        E+L LF EMQ  GI PD +T +   SAC+  G + +  
Sbjct: 301 DQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAW 360

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
              + + K+           +VD+ ++ G +A+A     +MP E  +    A++ G   H
Sbjct: 361 HFFKSLGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNH 420

Query: 392 GK 393
            +
Sbjct: 421 RR 422



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 40/326 (12%)

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
           + +G +D + +IF  +P   +  WN+II G+ + K    ++++F +M   G+ PD +T  
Sbjct: 50  SSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYP 109

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
               A ++L  L   + +H  I KE    +  +  +L+ MY  CG+I  A +VF EM  R
Sbjct: 110 FVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIR 169

Query: 377 NSLTYTAIIGGLALHGKALD--------------------------------AISYFSEM 404
           NS+++ A++ G A  G  LD                                A++ F  M
Sbjct: 170 NSVSWNAMLDGYAKCGD-LDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 228

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGRSG 463
             VG   + +T + +L AC H G ++ GR     M  +  R +  L+  + ++D+  + G
Sbjct: 229 RVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLR--TSLMDMYAKCG 286

Query: 464 LLEEAEQLIRSMPM-AADVVVWGALFFACRLHGNV--SIGERAAMKLLELDPQDSGIYVL 520
            +EEA  + R +PM   DV++W  +      HG V  S+     M++L + P D   Y+ 
Sbjct: 287 AIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVP-DEITYLC 345

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGV 546
           L +      +  EA    K + ++G+
Sbjct: 346 LFSACAHGGLVHEAWHFFKSLGKQGM 371


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 303/585 (51%), Gaps = 74/585 (12%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T      F  ++ I+ C+     NL        NVQNPN   +N  IRG +      
Sbjct: 1   MIKTNTTQDCFLVNQFISACSNLSCINL--AASAFANVQNPNVLVFNALIRGCVHCCYSE 58

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A+  Y  MLRN    P ++++  L K C  L     G  + GHV K GFD  ++V   +
Sbjct: 59  QALVHYMHMLRNN-VMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTL 117

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I  + + GD+G +  VFD+   R++ +W ++I+  VR G    A RLF +M      P++
Sbjct: 118 IEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEM------PEK 171

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
                                             V   NA++D Y K G  ESAE +F+ 
Sbjct: 172 ---------------------------------NVATWNAMIDGYGKLGNAESAEFLFNQ 198

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + ++S TTM+  Y++                                KR KE +ALF
Sbjct: 199 MPARDIISWTTMMNCYSR-------------------------------NKRYKEVIALF 227

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           H++   G+ PD VT    +SAC+ LGAL  G  +H ++  + F+L+V +G++L+DMYAKC
Sbjct: 228 HDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKC 287

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
           G+I  AL VF+++  +N   +  II GLA HG   +A+  F EM    + P+ +TF+ IL
Sbjct: 288 GSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISIL 347

Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           +AC H G ++EGR++F  M   + ++P+++HY CMVDLL ++GLLE+A ++IR+M +  +
Sbjct: 348 TACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPN 407

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
             +WGAL   C+LH N+ I   A   L+ L+P +SG Y LL NMY + N W E  K+R  
Sbjct: 408 SFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTT 467

Query: 541 MEERGVEK-TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           M++ GVEK  PG S +E+N  ++ F   D  HP   Q++  L +L
Sbjct: 468 MKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLLLAEL 512


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 282/492 (57%), Gaps = 51/492 (10%)

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F+G  +     KLG+D D                   A  +FDE   ++LVSWNSL++G 
Sbjct: 98  FIGDRLVSMYFKLGYDED-------------------AQRLFDEMPNKDLVSWNSLMSGL 138

Query: 156 VRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
              G+    +  F  M+ E   +P+EVT++ +VSACA +  L+ G+ +H  + + G++  
Sbjct: 139 SGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGK 198

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + N+L++MY                                K GFLD A ++F+++P 
Sbjct: 199 AKVVNSLINMY-------------------------------GKLGFLDAASQLFEEMPV 227

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           + +V WN+++  +     +++ + LF+ M+  GI PD  T V  L AC+  G       I
Sbjct: 228 RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 287

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H +I +  FN ++++ TAL+++YAK G +  +  +F E+ +R+ + +TA++ G A+H   
Sbjct: 288 HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACG 347

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +AI  F  M+  G+  D +TF  +LSAC H GLV+EG+KYF  MS ++R+ P+L HYSC
Sbjct: 348 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSC 407

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGRSG LE+A +LI+SMPM     VWGAL  ACR++GNV +G+  A +LL LDP D
Sbjct: 408 MVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSD 467

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
              Y++L+N+Y  + +W +A KVR +M+ER + + PGCS IE    ++ F+V D+ HP  
Sbjct: 468 HRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRS 527

Query: 575 EQIYDCLVQLTR 586
           ++I+  L +L R
Sbjct: 528 DEIHTKLEELIR 539



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 190/394 (48%), Gaps = 49/394 (12%)

Query: 8   SHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           S GF   RL++   +      D   + LF+ + N +  SWN  + G    G +   ++ +
Sbjct: 95  SDGFIGDRLVS---MYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAF 151

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
            +M    G +P+  T   +   CA +G    G  + G V+KLG      V N++I+++  
Sbjct: 152 CRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGK 211

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
            G L  A  +F+E  VR+LVSWNS++     +G+  + + LF  M+   + PD+ TM+ +
Sbjct: 212 LGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVAL 271

Query: 187 VSACAQLEDLNLGRE---IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + AC    D  LGR+   IH YI   G    + +A AL+++Y K G+L ++E+IF+ + +
Sbjct: 272 LRACT---DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKD 328

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +  ++ T M+ GYA                              V A   +EA+ LF  M
Sbjct: 329 RDRIAWTAMLAGYA------------------------------VHAC-GREAIKLFDLM 357

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLG--TALVDMYAK 359
              G++ D VT  H LSACS  G +++G    ++ E   E + +   L   + +VD+  +
Sbjct: 358 VKEGVEVDHVTFTHLLSACSHSGLVEEG---KKYFEIMSEVYRVEPRLDHYSCMVDLLGR 414

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            G +  A ++   MP E +S  + A++G   ++G
Sbjct: 415 SGRLEDAYELIKSMPMEPSSGVWGALLGACRVYG 448



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 121/247 (48%), Gaps = 3/247 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD  +++   +   +  SWN  +      G   + +DL+  M R  G  PD  T   L +
Sbjct: 215 LDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR-AGINPDQATMVALLR 273

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C   GL      I  ++ + GF+ D+ +  A+++++   G L  + ++F+E   R+ ++
Sbjct: 274 ACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA 333

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+      REAI+LF  M  E VE D VT   ++SAC+    +  G++    +S
Sbjct: 334 WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMS 393

Query: 208 E-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK-FGFLDIA 265
           E   +   +   + ++D+  + G+LE A E+  SM  +        ++G  + +G +++ 
Sbjct: 394 EVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELG 453

Query: 266 RKIFDDL 272
           +++ + L
Sbjct: 454 KEVAEQL 460


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 299/561 (53%), Gaps = 64/561 (11%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           + G  +    +E +++   + R GG  P     PL+ K CA       G +   H L  G
Sbjct: 146 LSGLSKLSLHQEFIEVVSSLHRRGGAIPSG-CIPLVLKSCAQSAASCQGSQTHCHALVRG 204

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG---------- 159
              D++V  A++  +   GD+  A   F E  V++ +  N LI G+ +SG          
Sbjct: 205 MLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFD 264

Query: 160 -FPR--------------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
             PR                    EA+ LF  M  E   P+ +T+  + S CA+  DL+ 
Sbjct: 265 SMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDT 324

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           GR    +I E  L   V +  ALM+MYVKC  +                           
Sbjct: 325 GRRARAWIREEDLQ-NVIVHTALMEMYVKCRAI--------------------------- 356

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
               D AR  FD +P + VV W+ +I GY Q  R  E+L LF  M+AT  KP+ VT V  
Sbjct: 357 ----DEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGV 412

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           LSAC+QLG+ + G  I  +IE +   L   LG+AL+DMY KCG++A+A  VF+ M ++  
Sbjct: 413 LSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVV 472

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +T+ ++I GLAL+G A DAI+ + +M+G G+ P+E+TF+ +L+AC H GLVD+G  +F +
Sbjct: 473 VTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEE 532

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M     +SP+++H +C+VDLL +SG L EA + I  M +  + V+W  L  ACR H +V 
Sbjct: 533 MKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVE 592

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           + + AA KL+ L+P +S IYVLL+N+Y D+ +W +  ++R +M  + ++K    S IE++
Sbjct: 593 LAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELD 652

Query: 559 GLLYEFIVRDKSHPELEQIYD 579
           G ++ F+V+D  HP   +IY+
Sbjct: 653 GEVHRFLVQDTYHPRSAEIYN 673



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 191/372 (51%), Gaps = 35/372 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+S +++   ++  ++    S SWN  I  +   G+ REA+ L+ QMLR G + P+  T 
Sbjct: 251 SKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGAS-PNAITI 309

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F +CA  G    G      + +     ++ VH A++ ++V C  +  A + FD    
Sbjct: 310 TTVFSICAKTGDLDTGRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHEFDRMPR 368

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++V+W+++I G+ ++G P E++ LF  M+    +P+EVT++G++SACAQL    LG +I
Sbjct: 369 RDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQI 428

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
             YI    L LT  L +AL+DMY KCG +  A  +F+ M  K VV+  +MI G A  GF 
Sbjct: 429 GNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGF- 487

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                         +++A+AL+ +M   GI+P+ VT V  L+AC
Sbjct: 488 ------------------------------AEDAIALYRKMVGDGIQPNEVTFVALLTAC 517

Query: 323 SQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLT 380
           +  G +D GI +     +K++ +  V     +VD+  K G + +A +   +M  E N++ 
Sbjct: 518 THAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVI 577

Query: 381 YTAIIGGLALHG 392
           ++ ++     H 
Sbjct: 578 WSTLLSACRAHA 589


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/463 (37%), Positives = 273/463 (58%), Gaps = 2/463 (0%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           GDL  A  VF+     N   WN++I  +  S  P  A   ++ M    V  +  T   ++
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC  L  +    ++H  + + G    V   NAL+ +Y  CG++  A ++FD++  +  V
Sbjct: 96  RACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAV 155

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S   MI GY K G +  A  +F D+P K VV W ++I G V+A +S EAL+L +EMQ  G
Sbjct: 156 SWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG 215

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
            + D V     L+AC+ LGALD G W+H ++     +++ V+G ALV+MY KCG++ +AL
Sbjct: 216 FELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEAL 275

Query: 368 QVFHEMP--ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
            VF ++   +++   +TA+I G A+HG+ ++A+ +F+ M   G+ P+ ITF  +L AC +
Sbjct: 276 SVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSY 335

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
           GGLV+EG++ F  M   + ++P ++HY CMVDLLGRSG L+EA++LI+ MPM    V+WG
Sbjct: 336 GGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWG 395

Query: 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
           AL  AC +H +  +G +    L+E+D   SG Y+ LA +      W+EA +VR  M+  G
Sbjct: 396 ALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLG 455

Query: 546 VEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           V  +PG SS+ +NG+++EF+   + HP++EQI   L Q+    
Sbjct: 456 VPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERL 498



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 203/425 (47%), Gaps = 65/425 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  T +I+     ++ +  C      +L Y  ++   + +PN+F WN  IR +  + +  
Sbjct: 11  MIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPE 70

Query: 61  EAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
            A   Y+QML +  + P N +T+P L + C +L       ++ G V+KLGF  D++  NA
Sbjct: 71  LAFLSYQQMLSS--SVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNA 128

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV--- 176
           ++HV+  CG++  A  +FD    R+ VSWN +I+G+++SG  + A  +F DM L+ V   
Sbjct: 129 LLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSW 188

Query: 177 ----------------------------EPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                                       E D V +  +++ACA L  L+ GR +H+Y+  
Sbjct: 189 TSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLN 248

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +G+ +   +  AL++MYVKCG +E A  +F  +                           
Sbjct: 249 NGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGN------------------------ 284

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                +K V  W A+I G+    R  EAL  F+ M+  GI+P+++T    L ACS  G +
Sbjct: 285 -----QKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLV 339

Query: 329 DDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS-LTYTAIIG 386
           ++G  + + ++   N N ++     +VD+  + G + +A ++  +MP + S + + A++ 
Sbjct: 340 EEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLK 399

Query: 387 GLALH 391
              +H
Sbjct: 400 ACWIH 404


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 303/568 (53%), Gaps = 40/568 (7%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           FSWNV + G++   ++ EA  L+  M      + D  ++  +    A  G      E+F 
Sbjct: 109 FSWNVMLTGYVRNRRLGEAHKLFDLM-----PKKDVVSWNAMLSGYAQNGFVDEAREVFN 163

Query: 104 ---HVLKLGFD--VDMYVHNAVIHV----------------------FVSCGDLGLACNV 136
              H   + ++  +  YVHN  +                        +V    LG A  +
Sbjct: 164 KMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQL 223

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           FD   VR+++SWN++I+G+ + G   +A RLF +  +     D  T   MVS   Q   +
Sbjct: 224 FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIR----DVFTWTAMVSGYVQNGMV 279

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
           +  R+   Y  E  +   +   NA++  YV+  K+  A E+F++M  + + S  TMI GY
Sbjct: 280 DEARK---YFDEMPVKNEISY-NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGY 335

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
            + G +  ARK+FD +P++  V W AII GY Q    +EAL +F EM+  G   +  T  
Sbjct: 336 GQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFS 395

Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
             LS C+ + AL+ G  +H  + K  F     +G AL+ MY KCG+  +A  VF  + E+
Sbjct: 396 CALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEK 455

Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
           + +++  +I G A HG    A+  F  M   G+ PDEIT +G+LSAC H GL+D G +YF
Sbjct: 456 DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYF 515

Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
             M   + + P  KHY+CM+DLLGR+G LEEAE L+R+MP       WGAL  A R+HGN
Sbjct: 516 YSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGN 575

Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
             +GE+AA  + +++PQ+SG+YVLL+N+Y  S  W + GK+R  M E GV+K  G S +E
Sbjct: 576 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVE 635

Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           V   ++ F V D  HPE ++IY  L +L
Sbjct: 636 VQNKIHTFSVGDCFHPEKDRIYAFLEEL 663



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 208/467 (44%), Gaps = 47/467 (10%)

Query: 39  QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLG 98
           ++P+  +WN AI   +  G    A+ ++  M R            + +    S  LR   
Sbjct: 42  KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSS---------VSYNAMISGYLRNAK 92

Query: 99  YEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           + +   +     + D++  N ++  +V    LG A  +FD    +++VSWN++++G+ ++
Sbjct: 93  FSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN 152

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           GF  EA  +F  M       + ++  G+++A      L   R +  + S+S   L     
Sbjct: 153 GFVDEAREVFNKMP----HRNSISWNGLLAAYVHNGRLKEARRL--FESQSNWELIS--W 204

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N LM  YVK   L  A ++FD M  + V+S  TMI GYA+ G L  A+++F++ P + V 
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVF 264

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W A++ GYVQ     EA   F EM       + ++    L+   Q   +         I
Sbjct: 265 TWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISYNAMLAGYVQYKKM--------VI 312

Query: 339 EKENFNL----NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
             E F      N+     ++  Y + G IA+A ++F  MP+R+ +++ AII G A +G  
Sbjct: 313 AGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHY 372

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ-MSSIFRLSPKLKHYS 453
            +A++ F EM   G   +  TF   LS C     ++ G++   Q + + F          
Sbjct: 373 EEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFET-------G 425

Query: 454 CMVD--LLG---RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           C V   LLG   + G  +EA  +   +    DVV W  +      HG
Sbjct: 426 CFVGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGYARHG 471



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 48/345 (13%)

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N  +  +++ G  +SA  +F+SM  ++ VS   MI GY +     +AR +FD +PE+ + 
Sbjct: 50  NKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLF 109

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD-------- 330
            WN ++ GYV+ +R  EA  LF  M     K D V+    LS  +Q G +D+        
Sbjct: 110 SWNVMLTGYVRNRRLGEAHKLFDLMP----KKDVVSWNAMLSGYAQNGFVDEAREVFNKM 165

Query: 331 ------------GIWIH--------RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
                         ++H        R  E ++ N  ++    L+  Y K   +  A Q+F
Sbjct: 166 PHRNSISWNGLLAAYVHNGRLKEARRLFESQS-NWELISWNCLMGGYVKRNMLGDARQLF 224

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             MP R+ +++  +I G A  G    A   F+E      + D  T+  ++S     G+VD
Sbjct: 225 DRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE----SPIRDVFTWTAMVSGYVQNGMVD 280

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           E RKYF +M     +S     Y+ M+    +   +  A +L  +MP   ++  W  +   
Sbjct: 281 EARKYFDEMPVKNEIS-----YNAMLAGYVQYKKMVIAGELFEAMP-CRNISSWNTMITG 334

Query: 491 CRLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEEA 534
              +G ++     A KL ++ PQ D   +  + + Y  +  +EEA
Sbjct: 335 YGQNGGIA----QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 111/279 (39%), Gaps = 69/279 (24%)

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM- 404
           ++V     +  + + G+   AL+VF+ MP R+S++Y A+I G   + K   A   F +M 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 405 -------------------IG-----VGLMP--DEITFLGILSACCHGGLVDEGRKYFAQ 438
                              +G       LMP  D +++  +LS     G VDE R+ F +
Sbjct: 105 ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNK 164

Query: 439 MSSIFRLS-----------PKLKH---------------YSCMVDLLGRSGLLEEAEQLI 472
           M     +S            +LK                ++C++    +  +L +A QL 
Sbjct: 165 MPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLF 224

Query: 473 RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL--ELDPQDSGIYVLLANMYRDSNM 530
             MP+  DV+ W  +     + G   +G+ +  K L  E   +D   +  + + Y  + M
Sbjct: 225 DRMPV-RDVISWNTM-----ISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
            +EA   RK  +E      P  + I  N +L  ++   K
Sbjct: 279 VDEA---RKYFDE-----MPVKNEISYNAMLAGYVQYKK 309


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/528 (36%), Positives = 294/528 (55%), Gaps = 19/528 (3%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           +R  G  P+ FT+  L + CA LGL      + G +++ GF  D++V NA++ V+  CG 
Sbjct: 101 MRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYRCGG 160

Query: 130 LGLAC-----NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
            G         VFDE   +++VSWNS++  ++ SG    A+ LF  M     E + V+  
Sbjct: 161 GGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMP----ERNVVSWN 216

Query: 185 GMVSACAQLEDLNLGREIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
            +V+  A+  D+   R +   + S + ++      N ++  Y   G +E+A  +FD M  
Sbjct: 217 TVVAGFARTGDMVTARTVFDRMPSRNAVSW-----NLMISGYATSGDVEAARSVFDRMDQ 271

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           K VVS T M+  YAK G LD A+++FD +P K +V WNA+I GY    R  EAL  F  M
Sbjct: 272 KDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLM 331

Query: 304 QATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
              G  +PD  T V  +SAC+QLG+++   WI  FI K N +L V LG AL+DM+AKCG+
Sbjct: 332 MLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGD 391

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           + +A  +F++M  R  +T+T +I G A +G   +A+  ++ M   G+  D   F+  L+A
Sbjct: 392 VGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAA 451

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C HGGL+ EG   F +M   + + P+++HY C+VDLLGR+G L+EA   I SMP+   VV
Sbjct: 452 CTHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVV 511

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           +W  L  +C  HGN  + E  + K+ EL+P +S   VL++N       W+     R  M 
Sbjct: 512 IWVTLLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMR 571

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY---DCLVQLTRH 587
             G+EK PG S I+V   ++EF+ +D  H   ++IY   D L+ L RH
Sbjct: 572 NWGIEKVPGSSLIQVGSEVHEFLAKDTRHERRKEIYETVDGLMALMRH 619



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 180/392 (45%), Gaps = 59/392 (15%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           N  SWN  + GF  TG M  A  ++ +M  RN                  S  L   GY 
Sbjct: 211 NVVSWNTVVAGFARTGDMVTARTVFDRMPSRNA----------------VSWNLMISGYA 254

Query: 101 IFGHV--LKLGFD----VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
             G V   +  FD     D+    A++  +   GDL  A  +FD   V+NLVSWN++I G
Sbjct: 255 TSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITG 314

Query: 155 FVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           +  +    EA+R F+ M LE R  PDE T++ +VSACAQL  +     I  +I +S   L
Sbjct: 315 YNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHL 374

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
           TV L NAL+DM+ KCG +  A+ IF  M  + +++ TTMI G+A  G             
Sbjct: 375 TVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGL------------ 422

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                               +EAL +++ M   G++ D    +  L+AC+  G L +G  
Sbjct: 423 -------------------CREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWS 463

Query: 334 I-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           I +  +E+ N    +     +VD+  + GN+ +A+     MP E + + +  ++     H
Sbjct: 464 IFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAH 523

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           G A + I Y S+ I   L P   ++  ++S C
Sbjct: 524 GNA-ELIEYVSKKI-TELEPFNSSYQVLVSNC 553



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 4/264 (1%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A ++  +LD   ++  ++   N  SWN  I G+    +  EA+  ++ M+  G  RPD  
Sbjct: 283 AYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 342

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T   +   CA LG       I   + K    + + + NA+I +F  CGD+G A ++F + 
Sbjct: 343 TLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKM 402

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R +++W ++I+GF  +G  REA+ ++ +M  E VE D    I  ++AC     L  G 
Sbjct: 403 ETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGW 462

Query: 201 EI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAK 258
            I +  + +  +   +     ++D+  + G L+ A    +SM +  +VV   T++     
Sbjct: 463 SIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVA 522

Query: 259 FGFLDIARKIFDDLPEKYVVPWNA 282
            G  ++   +   + E  + P+N+
Sbjct: 523 HGNAELIEYVSKKITE--LEPFNS 544


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 297/533 (55%), Gaps = 36/533 (6%)

Query: 52  GFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL--GYEIFGHVLKLG 109
            F   G   EA+  +++M ++G  RPD  T+ ++    A +G   +  G EI  +    G
Sbjct: 3   AFSHNGCHSEALVFFRRMYQSG-ERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISG 61

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
              ++ V  AVI ++  CG L  A   F+E   +N V+WN+++  +   G  REA+ LFR
Sbjct: 62  LLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFR 121

Query: 170 DM--QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK 227
           +M  +     PD+ +    + AC+ LEDL  GREIH  +   G  L              
Sbjct: 122 EMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKEL-------------- 167

Query: 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP-EKYVVPWNAIIGG 286
                          +K VV  T ++  Y+K G L+ ARK+FD +  +   V WNA+I  
Sbjct: 168 ---------------HKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAA 212

Query: 287 YVQAKRSKEALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           Y Q  R K+AL L+  M   T + P   T V  +  C++L AL  G  IH  +   NF+ 
Sbjct: 213 YAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDA 272

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           N+++  ALV MY KCG + +AL VFH M  ++ +++  II   A HG +  A+  + EM 
Sbjct: 273 NLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMD 332

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ P E+TF+G+LSAC HGGLV +G  YF +M    R+ P + H+ C++DLLGR G L
Sbjct: 333 LQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRL 392

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
            EAE +++SMP+ A+ V W +L  AC+ HG++  G RAA ++++  P  SG YVLL+N+Y
Sbjct: 393 AEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIY 452

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
             +  W++  K+RK+M  RGV+K+PG S IE+  +++EF+  D+SHP+ E+IY
Sbjct: 453 AAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIY 505



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 192/395 (48%), Gaps = 45/395 (11%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G  P+ ++    IS   +   LD        +Q  NS +WN  +  +   G+ REA++L+
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 67  KQML-RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV--DMYVHNAVIHV 123
           ++M  R+   RPD F++ +  + C++L     G EI   + + G ++  D+ V  A++++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 124 FVSCGDLGLACNVFDESCVR---NLVSWNSLINGFVRSGFPREAIRLFRDMQ-LERVEPD 179
           +  CGDL  A  VFD   +R   + V WN++I  + + G  ++A+ L+R M     + P 
Sbjct: 181 YSKCGDLEEARKVFDS--IRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 238

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
           + T + ++  CA+L  L  GR IH  +  +     + ++NAL+ MY KCG L+ A ++F 
Sbjct: 239 QGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFH 298

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
           SM  K  +S  T+I  YA  G  D                               +AL L
Sbjct: 299 SMKLKDEISWNTIISSYAYHGHSD-------------------------------QALLL 327

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYA 358
           + EM   G+KP  VT V  LSACS  G + DG+ + +R  +      +V     ++D+  
Sbjct: 328 YQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLG 387

Query: 359 KCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           + G +A+A  V   MP + N++ + +++G    HG
Sbjct: 388 RGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG 422



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 14/297 (4%)

Query: 23  SESKNLDYCTKILFNVQ-NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81
           S+  +L+   K+  +++ + +S  WN  I  + + G+ ++A+DLY+ M       P   T
Sbjct: 182 SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 241

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           +  +  VCA L     G  I   V    FD ++ V NA++H++  CG L  A +VF    
Sbjct: 242 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 301

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
           +++ +SWN++I+ +   G   +A+ L+++M L+ V+P EVT +G++SAC+    +  G +
Sbjct: 302 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLD 361

Query: 202 IHWYISESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKF 259
             + + +   +  +VP    ++D+  + G+L  AE +  SM +    V   +++      
Sbjct: 362 YFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTH 421

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKRSKEALALFHEMQATGIK 309
           G L    +  D + ++  VPW +  GGYV        A R K+   +   M A G+K
Sbjct: 422 GDLKRGVRAADQVVDR--VPWTS--GGYVLLSNIYAAAGRWKDVEKIRKIMAARGVK 474


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 313/583 (53%), Gaps = 34/583 (5%)

Query: 39  QNPNSFSWNVA--IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL--------FK- 87
           Q P+S S  +A  +      G++ EA+    ++ + G   P      LL        FK 
Sbjct: 21  QRPDSTSLCIAQSLLDLSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKG 80

Query: 88  -VCASLGLRFLGYE---------IFGHVLKLGFDVD------------MYVHNAVIHVFV 125
             C  L L+  G++         + G   + G DV+            +Y  N ++  + 
Sbjct: 81  GKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYA 140

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
             GD+  A  +FD    +++VSWN+++  + + G   EAI L+RD +   +  +  +  G
Sbjct: 141 KLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAG 200

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C +L++L L +++H  +  +G    + L+++++D Y KCG++  A  +FD M+ K 
Sbjct: 201 VLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKD 260

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           + + TT++ GYAK+G ++ A ++F  +PEK  V W+A+I GY +     EAL  F +M  
Sbjct: 261 IHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK 320

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            GI P+  T   CL AC+ + AL  G  +H ++ +  F  N ++ ++L+DMY+KCG +  
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEA 380

Query: 366 ALQVFHEMPERNS-LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           +  VFH M  +   + +  +I  LA +G    A+  F++M+  GL PD ITF+ ILSAC 
Sbjct: 381 SCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACS 440

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLV EG ++F  M+    + P  +HYSC++DLLGR+G   E    + +M    D  VW
Sbjct: 441 HSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVW 500

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL   CR+H N+ +G + A +++EL PQ S  YV LA++Y     WE   KVR++M+E+
Sbjct: 501 SALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEK 560

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
            + K  G S I+V    + FI  D+ HP  E+IY  L QL RH
Sbjct: 561 FIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARH 603



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 175/402 (43%), Gaps = 72/402 (17%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++   K+   +   +  SWN  +  + + G   EA+ LY+   R      + F++  + 
Sbjct: 144 DVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRD-FRRLDMGFNAFSFAGVL 202

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV---- 142
            +C  L    L  ++ G VL  GF  ++ + ++++  +  CG++  A  +FDE  V    
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIH 262

Query: 143 ---------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
                                      +N VSW++LI+G+ R+    EA+  F  M    
Sbjct: 263 AWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFG 322

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           + P++ T    + ACA +  L  G+++H Y+  +       + ++L+DMY KCG LE++ 
Sbjct: 323 INPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASC 382

Query: 236 EIFDSMVNKT-VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            +F  M NK  VV   TMI   A+ G                                 +
Sbjct: 383 CVFHLMGNKQDVVVWNTMISALAQNG-------------------------------HGE 411

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG---- 350
           +A+ +F++M  +G+KPD +T +  LSACS  G + +G+   RF +   ++  V       
Sbjct: 412 KAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGL---RFFKAMTYDHGVFPDQEHY 468

Query: 351 TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           + L+D+  + G   + +     M  + +   ++A++G   +H
Sbjct: 469 SCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 298/558 (53%), Gaps = 36/558 (6%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++ +   +     + N F WN  IR F  T   R ++ LY +ML+ G  +  NFT+P L 
Sbjct: 49  SISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLG-IQATNFTFPFLL 107

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
           K C  L    LG     HV+  G++ D++V N+++ ++   G    +  VF+    RN+V
Sbjct: 108 KACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVV 167

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW+S++  +  +G   E + LF  M  E + P+  +++  + AC   E  +   +    +
Sbjct: 168 SWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIHRE--HEADDFCRVV 224

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            ++GL     + NA M MY +CG++                               D+AR
Sbjct: 225 IDNGLDSDQSVQNAAMGMYARCGRI-------------------------------DVAR 253

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           + F  + +K +V W ++I  YVQA     AL LF +M+  GI PD+VT +  + A S L 
Sbjct: 254 RFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLA 313

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           +     ++H  I +  F  ++ L TA++D+Y KCGN+  A + F  M  RN ++++ +I 
Sbjct: 314 SFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMIS 373

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G  +HG   +A+  F +M    + PD I F+ +LSAC HGGL+ EG + F  M+  F ++
Sbjct: 374 GYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVT 432

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P+ +HY+CMVDLLGR+G L EA+  I  MP+  D  VWGAL  ACR+H N+   E AA  
Sbjct: 433 PRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARH 492

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L  LD ++ G Y+LL+N+Y  S   +EA  +R +M+ RGV KT G + IE+   +Y F+ 
Sbjct: 493 LFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVA 552

Query: 567 RDKSHPELEQIYDCLVQL 584
            D S+P+ + IY  L +L
Sbjct: 553 GDTSNPQTDLIYSELRKL 570



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 3/201 (1%)

Query: 227 KCGKLESAEEIFDSMVNKTVVS--CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           +C  LE+ + +  S++   +    CT++I  YA  G +  A  +F       V  WN II
Sbjct: 13  QCVTLEALKSLHASILKSHLHPHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHII 72

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
             +     S+ +L L+  M   GI+    T    L AC  L   + G   H  +    + 
Sbjct: 73  RAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYE 132

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
            +V +  +L+ MY + G    + QVF  MPERN +++++++G  A +G+  + +  F  M
Sbjct: 133 SDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRM 192

Query: 405 IGVGLMPDEITFLGILSACCH 425
           +  G+ P+  + +  + AC H
Sbjct: 193 LNEGIAPNRGSIVNAM-ACIH 212


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 302/599 (50%), Gaps = 62/599 (10%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           +R     A++ S+ +    ++  ++   ++ S+N  I GF  TG    +V LY+ +LR  
Sbjct: 81  TRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREE 140

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDMY--------- 115
             RP   T   +  V ++L  R LG+ +   VL+LGF          VDMY         
Sbjct: 141 SVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDA 200

Query: 116 -------------VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
                        ++N +I   + C  +  A  +F     R+ ++W +++ G  ++G   
Sbjct: 201 RRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQL 260

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+ +FR M+ E V  D+ T   +++AC  L  L  G++IH YI+ +     V + +AL+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALV 320

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY KC  +  AE +F  M  + ++S                               W A
Sbjct: 321 DMYSKCRSIRLAEAVFRRMTCRNIIS-------------------------------WTA 349

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GY Q   S+EA+  F EMQ  GIKPD  T    +S+C+ L +L++G   H       
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
               + +  ALV +Y KCG+I  A ++F EM   + +++TA++ G A  GKA + I  F 
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M+  GL PD +TF+G+LSAC   GLV++G  YF  M     + P   HY+CM+DL  RS
Sbjct: 470 KMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRS 529

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G  +EAE+ I+ MP + D   W  L  +CRL GN+ IG+ AA  LLE DPQ+   YVLL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +M+     W E   +R+ M +R V+K PGCS I+    ++ F   D+SHP   +IY+ L
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 200/407 (49%), Gaps = 38/407 (9%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNL----------------------------- 145
           ++ N ++  +   G L  A  VFDE    NL                             
Sbjct: 49  FLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPER 108

Query: 146 --VSWNSLINGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
             VS+N+LI GF  +G P  +++L+R  ++ E V P  +T+  M+   + L D  LG  +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  +   G      + + L+DMY K G +  A  +F  M  KTVV   T+I G  +   +
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           + A+ +F  + ++  + W  ++ G  Q     EAL +F  M+A G+  D  T    L+AC
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             L AL++G  IH +I +  +  NV +G+ALVDMY+KC +I  A  VF  M  RN +++T
Sbjct: 289 GALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY--FAQMS 440
           A+I G   +  + +A+  FSEM   G+ PD+ T   ++S+C +   ++EG ++   A +S
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + R    +   + +V L G+ G +E+A +L   M    D V W AL
Sbjct: 409 GLMRY---ITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTAL 451



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 37/326 (11%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+  Y K G+L  A  +FD M +  + +   ++   A    +    ++F  +PE+ 
Sbjct: 50  LLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERD 109

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHE-MQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            V +NA+I G+        ++ L+   ++   ++P  +T    +   S L     G  +H
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--------------------- 374
             + +  F     +G+ LVDMYAK G I  A +VF EM                      
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 375 ----------ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
                     +R+S+T+T ++ GL  +G  L+A+  F  M   G+  D+ TF  IL+AC 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
               ++EG++  A ++  +     +   S +VD+  +   +  AE + R M    +++ W
Sbjct: 290 ALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRM-TCRNIISW 347

Query: 485 GALFFACRLHGNVSIGERAAMKLLEL 510
            A+      +G  +  E A     E+
Sbjct: 348 TAMIVG---YGQNACSEEAVRAFSEM 370


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 282/515 (54%), Gaps = 39/515 (7%)

Query: 110 FDVDMYVHNAVIHVFVS-CGDLG---LACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +  +++  + V+  F+S C  L     A ++F    ++N   +N+LI G   +     +I
Sbjct: 66  YRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSI 125

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
             F  M   ++ PD +T   ++ + A L +  +GR +H  I + GL     +  +L+DMY
Sbjct: 126 SFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMY 185

Query: 226 VKC-----------------------------------GKLESAEEIFDSMVNKTVVSCT 250
           VK                                    G L  A E+FDSM  K   S  
Sbjct: 186 VKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWN 245

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++I G+ K G +  A+++F  +PEK VV W  ++ G+ Q    ++AL  F  M   G +P
Sbjct: 246 SLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARP 305

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +  T V  LSAC+++GALD G+ IH ++    F LN+V+GTALVDMYAKCGNI  A +VF
Sbjct: 306 NDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVF 365

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
           HE  E+  L ++ +I G A+HG    A+ YF  M   G  PD + FL +L+AC H G V+
Sbjct: 366 HETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVN 425

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           EG K+F  M   + + P +KHY+ +VD+LGR+G L+EA + IR+MP+  D VVWGALF A
Sbjct: 426 EGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCA 485

Query: 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550
           CR H NV + E A+ KLL+L+P+  G YV L+N Y     W++A +VR  M + G  K P
Sbjct: 486 CRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDP 545

Query: 551 GCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           G S IEV+  L+ F+  D +H    +IY  L +++
Sbjct: 546 GWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEIS 580



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 190/436 (43%), Gaps = 107/436 (24%)

Query: 11  FAPSRLIA--FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQ 68
           F+ SR++     + S   ++DY   I    +  NS+ +N  IRG  E  +   ++  +  
Sbjct: 71  FSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVL 130

Query: 69  MLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128
           ML+     PD  T+P + K  A+L    +G  +   +LK G + D +V  +++ ++V   
Sbjct: 131 MLK-WKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVE 189

Query: 129 DLGLACNVFDES--CVRN------------------LV---------------SWNSLIN 153
           +LG A  VFDES   V+N                  LV               SWNSLIN
Sbjct: 190 ELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLIN 249

Query: 154 GFVR-------------------------------SGFPREAIRLFRDMQLERVEPDEVT 182
           GF++                               +G P +A+  F  M  E   P++ T
Sbjct: 250 GFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYT 309

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           ++  +SACA++  L+ G  IH Y+S +G  L + +  AL+DMY KCG +E AE++F    
Sbjct: 310 IVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETK 369

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K ++  + MI G+A  G                                 ++AL  F  
Sbjct: 370 EKGLLIWSVMIWGWAIHGHF-------------------------------RKALQYFEW 398

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLG--TALVDMYA 358
           M+ TG KPD+V  +  L+ACS  G +++G+   +F +  +  + +   +   T +VDM  
Sbjct: 399 MKFTGTKPDSVVFLAVLNACSHSGQVNEGL---KFFDNMRRGYLIEPSMKHYTLVVDMLG 455

Query: 359 KCGNIAKALQVFHEMP 374
           + G + +AL+    MP
Sbjct: 456 RAGRLDEALKFIRAMP 471


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 299/553 (54%), Gaps = 33/553 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +   WN  I G+++ G   E++ ++ +M+  GG RP   T   L K C   
Sbjct: 201 KVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMI-GGGLRPSPVTMANLLKACGQS 259

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           GL+ +G     +VL LG   D++V  +++ ++ + GD G A  VFD  C R+L+SWN++I
Sbjct: 260 GLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMI 319

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+V++G   E+  LFR +       D  T++ ++  C+Q  DL  GR +H  I    L 
Sbjct: 320 SGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELE 379

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
             + L+ A++DMY KCG ++ A  +F  M  K V++ T M+VG ++ G+           
Sbjct: 380 SHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGY----------- 428

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                               +++AL LF +MQ   +  ++VT V  +  C+ LG+L  G 
Sbjct: 429 --------------------AEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGR 468

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF-HEMPERNSLTYTAIIGGLALH 391
            +H    +  +  + V+ +AL+DMYAKCG I  A ++F +E   ++ +   ++I G  +H
Sbjct: 469 TVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMH 528

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G    A+  +S MI   L P++ TF+ +L+AC H GLV+EG+  F  M     + P+ KH
Sbjct: 529 GHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKH 588

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y+C+VDL  R+G LEEA++L++ MP      V  AL   CR H N ++G + A +L+ LD
Sbjct: 589 YACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLD 648

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
             +SGIYV+L+N+Y ++  WE    +R +M  +G++K PG S IEV   +Y F   D SH
Sbjct: 649 YLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSH 708

Query: 572 PELEQIYDCLVQL 584
           P    IY  L  L
Sbjct: 709 PSWADIYQLLENL 721



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 142/513 (27%), Positives = 242/513 (47%), Gaps = 52/513 (10%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           P +   N  I GFL   +  E   L++ M+ +     +++T     K C  L    +G E
Sbjct: 108 PETAVCNAMIAGFLRNQQHMEVPRLFR-MMGSCDIEINSYTCMFALKACTDLLDDEVGME 166

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           I    ++ GF + +YV +++++  V  G L  A  VFD    +++V WNS+I G+V+ G 
Sbjct: 167 IIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGL 226

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
             E+I++F +M    + P  VTM  ++ AC Q     +G   H Y+   G+   V +  +
Sbjct: 227 FWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTS 286

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMY   G   SA  +FDSM +++++S   MI GY + G           +PE Y    
Sbjct: 287 LVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGM----------IPESY---- 332

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
                            ALF  +  +G   D+ T V  +  CSQ   L++G  +H  I +
Sbjct: 333 -----------------ALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIR 375

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
           +    ++VL TA+VDMY+KCG I +A  VF  M ++N +T+TA++ GL+ +G A DA+  
Sbjct: 376 KELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKL 435

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH--------Y 452
           F +M    +  + +T + ++  C H G + +GR   A           ++H         
Sbjct: 436 FCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHF---------IRHGYAFDAVIT 486

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN--VSIGERAAMKLLEL 510
           S ++D+  + G +  AE+L  +     DV++  ++     +HG+   ++G  + M    L
Sbjct: 487 SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERL 546

Query: 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
            P  +  +V L      S + EE   +   ME 
Sbjct: 547 KPNQT-TFVSLLTACSHSGLVEEGKALFHSMER 578



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 178/398 (44%), Gaps = 37/398 (9%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            I   ++K     + ++   +I V+   G LG A NVFD+  +      N++I GF+R+ 
Sbjct: 65  SIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQ 124

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              E  RLFR M    +E +  T +  + AC  L D  +G EI       G  L + + +
Sbjct: 125 QHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGS 184

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           ++++  VK G L  A+++FD M  K VV                                
Sbjct: 185 SMVNFLVKRGYLADAQKVFDGMPEKDVVC------------------------------- 213

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN+IIGGYVQ     E++ +F EM   G++P  VT  + L AC Q G    G+  H ++ 
Sbjct: 214 WNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVL 273

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
                 +V + T+LVDMY+  G+   A  VF  M  R+ +++ A+I G   +G   ++ +
Sbjct: 274 ALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYA 333

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVD 457
            F  ++  G   D  T + ++  C     ++ GR      S I R  L   L   + +VD
Sbjct: 334 LFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILH---SCIIRKELESHLVLSTAIVD 390

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +  + G +++A  +   M    +V+ W A+      +G
Sbjct: 391 MYSKCGAIKQATIVFGRMG-KKNVITWTAMLVGLSQNG 427


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 289/492 (58%), Gaps = 35/492 (7%)

Query: 100 EIFGHVLKLGFDVDMYVHN--AVIHVFVSCGDLGLACNVFDESCVR--NLVSWNSLINGF 155
           +I  H+LKLG   +  V    A I   +   D   +     E+  R  +   +N+LI  +
Sbjct: 47  QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAY 106

Query: 156 VRSGFPRE-AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
            ++G  ++ A+ L+  M  + + P++ T   ++ ACA LE LNLG+ +H  + + G    
Sbjct: 107 AQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCD 166

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           + + N ++ MY  C                               G ++ ARK+FD++P+
Sbjct: 167 IHVQNTMVHMYSCCA------------------------------GGINSARKVFDEMPK 196

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
              V W+A+IGGY +  RS EA+ALF EMQ   + PD +T V  LSAC+ LGAL+ G WI
Sbjct: 197 SDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWI 256

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
             +IE+   +  V +  AL+DM+AKCG+I+KAL++F  M E+  +++T++I G+A+HG+ 
Sbjct: 257 EAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRG 316

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +A   F EM   G+ PD++ F+G+LSAC H GLV+ GR+YF  M   ++L PK++HY C
Sbjct: 317 QEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGC 376

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVD+  R+GL++EA + +R+MP+  + V+   L  ACR HG   +GE+    L++ +P  
Sbjct: 377 MVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLH 436

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
              YVLL+N+Y  +  WE+  K+R++ME +G++K PG + IE++  +YEF+  DKSH + 
Sbjct: 437 ESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQH 496

Query: 575 EQIYDCLVQLTR 586
           ++IY+ + ++ R
Sbjct: 497 KEIYEMVDEMGR 508



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 41/390 (10%)

Query: 13  PSRLIAFCAISE-SKNLDYCTKILFNVQNP----NSFSWNVAIRGFLETGKMRE-AVDLY 66
           P  L  F +IS      DY    LF+ +      ++F +N  IR + +TG  ++ A+ LY
Sbjct: 61  PLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALY 120

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
             ML +    P+ FTYP + K CA L +  LG  + G V+K GFD D++V N ++H++  
Sbjct: 121 GIMLHDA-ILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSC 179

Query: 127 C-GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
           C G +  A  VFDE    + V+W+++I G+ R G   EA+ LFR+MQ+  V PDE+TM+ 
Sbjct: 180 CAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVS 239

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           M+SAC  L  L LG+ I  YI    +   V ++NAL+DM+ KCG +  A ++F +M  KT
Sbjct: 240 MLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKT 299

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           +VS T++IVG A  G                               R +EA  LF EM +
Sbjct: 300 IVSWTSVIVGMAMHG-------------------------------RGQEATCLFEEMTS 328

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
           +G+ PD V  +  LSACS  G ++ G  +    ++K      +     +VDMY + G + 
Sbjct: 329 SGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVK 388

Query: 365 KALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
           +AL+    MP E N +    ++     HG+
Sbjct: 389 EALEFVRNMPIEPNPVILRTLVSACRGHGE 418



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           ++   K+   +   +S +W+  I G+   G+  EAV L+++M +     PD  T   +  
Sbjct: 184 INSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREM-QMAEVCPDEITMVSMLS 242

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C  LG   LG  I  ++ +      + V NA+I +F  CGD+  A  +F     + +VS
Sbjct: 243 ACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVS 302

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYI 206
           W S+I G    G  +EA  LF +M    V PD+V  IG++SAC+    +  GRE     +
Sbjct: 303 WTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMM 362

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIA 265
            +  L   +     ++DMY + G ++ A E   +M +    V   T++      G   + 
Sbjct: 363 KKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLG 422

Query: 266 RKI 268
            KI
Sbjct: 423 EKI 425


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 303/592 (51%), Gaps = 63/592 (10%)

Query: 22  ISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNF 80
           ++ ++ LD    +  ++   ++ S+N  I GF   G    AV LY  +LR G + RP   
Sbjct: 82  LAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRI 141

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T   +    ++LG R LG +    +L+LGF V+ +V + ++ ++   G +G A  VFDE 
Sbjct: 142 TMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEM 201

Query: 141 CVRNLV-------------------------------SWNSLINGFVRSGFPREAIRLFR 169
             +N+V                               +W +++ GF ++G   +A+  FR
Sbjct: 202 DGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFR 261

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            M+ + +  D+ T   +++AC  L  L  G++IH YI  +     V + +AL+DMY KC 
Sbjct: 262 RMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCR 321

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
            ++ AE  F  M  K ++S                               W A+I GY Q
Sbjct: 322 SIKPAETAFRRMSCKNIIS-------------------------------WTALIVGYGQ 350

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
              S+EA+ +F EMQ  GI PD  T    +S+C+ L +L++G   H           + +
Sbjct: 351 NGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITV 410

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             ALV +Y KCG+I  A ++F EM   + +++TA++ G A  G+A + I  F +M+   +
Sbjct: 411 SNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDV 470

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD +TF+G+LSAC   G V++G  YF  M     + P   HY+CM+DL  RSG L+EAE
Sbjct: 471 KPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAE 530

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
           + I+ MPM  D + WG L  ACRL G++ IG+ AA  LLE+DPQ+   YVLL +M+    
Sbjct: 531 EFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKG 590

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
            W +  ++R+ M +R V+K PGCS I+    ++ F   D+SHP  + IY+ L
Sbjct: 591 NWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKL 642



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/381 (31%), Positives = 198/381 (51%), Gaps = 12/381 (3%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           +++ +NA++        L    ++F     R+ VS+N++I GF   G    A+RL+  + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 173 L--ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
                V P  +TM  MV A + L D  LGR+ H  I   G  +   + + L+ MY K G 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +  A+ +FD M  K VV   TMI G  +   ++ AR++F+ + ++  + W  ++ G+ Q 
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
               +AL  F  M+  GI  D  T    L+AC  L AL+ G  IH +I + +++ NV +G
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           +ALVDMY+KC +I  A   F  M  +N +++TA+I G   +G + +A+  FSEM   G+ 
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY----SCMVDLLGRSGLLE 466
           PD+ T   ++S+C +   ++EG ++         L   L HY    + +V L G+ G +E
Sbjct: 371 PDDFTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 467 EAEQLIRSMPMAADVVVWGAL 487
           +A +L   M +  D V W AL
Sbjct: 426 DAHRLFDEM-LFHDQVSWTAL 445



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 142/343 (41%), Gaps = 57/343 (16%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+  Y K G+   A  +FD+  +  + +   ++   A    LD    +F  + ++ 
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRD 102

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPDAVTTVHCLSACSQLGALDDGIWI 334
            V +NA+I G+        A+ L+H +   G  ++P  +T    + A S LG    G   
Sbjct: 103 TVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQF 162

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE---------------------- 372
           H  I +  F +N  +G+ LV MYAK G I  A +VF E                      
Sbjct: 163 HCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMV 222

Query: 373 ---------MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
                    M +R+ +T+T ++ G   +G    A+++F  M   G+  D+ TF  IL+AC
Sbjct: 223 EEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTAC 282

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHY-------SCMVDLLGRSGLLEEAEQLIRSMP 476
                +++G++  A    I R      HY       S +VD+  +   ++ AE   R M 
Sbjct: 283 GALSALEQGKQIHAY---IIR-----THYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLEL-----DPQD 514
              +++ W AL      +G     E A     E+     DP D
Sbjct: 335 -CKNIISWTALIVG---YGQNGCSEEAVRVFSEMQRDGIDPDD 373


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 180/434 (41%), Positives = 263/434 (60%), Gaps = 39/434 (8%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           WN++I G+ RS  PREAI L+  M  + +  P+  T   ++++CA+L  L  G E+H +I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G    + + NAL+ +Y                               + FG L++AR
Sbjct: 62  IKHGFESDLFVRNALIHLY-------------------------------SVFGNLNLAR 90

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
            +FD+   + +V +N +I GY +  + + AL LF EMQ +    D VT V  LSAC++LG
Sbjct: 91  TLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLG 146

Query: 327 ALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTA 383
           A D G  + H++IE   FN N +L  A++DMYAKCG+I  AL++F  + +  +    + +
Sbjct: 147 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 206

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GLA HG    AI+ F E+I  GL PDE+TF+G+L AC H GL++EG+K F  M + +
Sbjct: 207 MIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY 266

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + P+++HY CMVDLLGR G LEEA  L++ MP  A+ V+W AL  ACR HGNV IGE A
Sbjct: 267 GIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIA 326

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
             KLLE++ Q    YVLL+N+  D+N WEEA +VRK+ME+ G+ K PG S IE+ G ++ 
Sbjct: 327 GQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHR 386

Query: 564 FIVRDKSHPELEQI 577
           F+  DKSHP+ ++I
Sbjct: 387 FVASDKSHPQGKEI 400



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 187/355 (52%), Gaps = 44/355 (12%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  IRG+  +   REA+ LY  M+  G   P+NFT+P L   CA L     G+E+  H+
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +K GF+ D++V NA+IH++   G+L LA  +FDES VR+LVS+N++I G+     P  A+
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDM 224
            LF +MQ      DEVT++ ++SACA+L   +LG+ + H YI          L  A+MDM
Sbjct: 122 CLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y KCG ++SA EIF                           R++  ++   +V  +N++I
Sbjct: 178 YAKCGSIDSALEIF---------------------------RRVGKNMKTGFV--FNSMI 208

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            G  Q    + A+ +F E+ +TG+KPD VT V  L AC   G +++G    + + +  FN
Sbjct: 209 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEG----KKLFESMFN 264

Query: 345 LNVVLGT-----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
              +         +VD+  + G + +A  +  +MP E NS+ + A++     HG 
Sbjct: 265 AYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN 319



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 6   LISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           +I HGF     +    I   S   NL+    +       +  S+N  I+G+ E  +   A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVI 121
           + L+ +M        D  T   +   CA LG   LG  ++   ++ G F+ +  +  AV+
Sbjct: 121 LCLFGEM-----QNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVM 175

Query: 122 HVFVSCGDLGLACNVFDE--SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
            ++  CG +  A  +F      ++    +NS+I G  + G    AI +FR++    ++PD
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPD 235

Query: 180 EVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           EVT +G++ AC     +  G+++     +  G+   +     ++D+  + G LE A ++ 
Sbjct: 236 EVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLV 295

Query: 239 DSM 241
             M
Sbjct: 296 QKM 298


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/594 (30%), Positives = 327/594 (55%), Gaps = 49/594 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S+NL+   K+   +   + FSW V I GF   G   + + L+ +M ++ G  P+ FT 
Sbjct: 332 AKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKM-QDQGVCPNQFTL 390

Query: 83  PLLFKVCAS-LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC-------------- 127
            ++ K C+S +    +G  I G +L+ G D+D  ++N+++  +V C              
Sbjct: 391 SIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMA 450

Query: 128 -----------------GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
                            GD+  + ++F +   ++  SWN++I+G +R+G  R A+ L   
Sbjct: 451 EKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYK 510

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
           M       +++T    +   + L  L LG++IH  + + G+     + N+L+DMY KCG+
Sbjct: 511 MVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGE 570

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +E A  IF  +  ++                ++      D + E   V W++++ GYVQ 
Sbjct: 571 MEKASVIFKHLPQES--------------SMMNSEESCDDAVVES--VSWSSMVSGYVQN 614

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
            R ++AL  F  M  + ++ D  T    +SAC+  G L+ G  +H +I+K    L+V LG
Sbjct: 615 GRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLG 674

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           ++++DMY KCG++  A  +F++  +RN + +T++I G ALHG+  +A+  F  MI  G+ 
Sbjct: 675 SSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGIT 734

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P+E++F+G+L+AC H GL++EG KYF  M  ++ + P  +H++CMVDL GR+G L E ++
Sbjct: 735 PNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKE 794

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
            I +  ++    VW +   +CR+H N+ +G     KLLEL+P D+G Y+L +++    + 
Sbjct: 795 FIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHR 854

Query: 531 WEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           WEEA K+R +M++RGV+K P  S I++   ++ F++ D+SHP+  +IY  L +L
Sbjct: 855 WEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDEL 908



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 222/451 (49%), Gaps = 35/451 (7%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N +++++    +L  A  +F+E    ++ SW  LI+GF R G   + + LF  MQ + V 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 178 PDEVTMIGMVSAC-AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           P++ T+  ++ +C + + D  +G+ IH +I  +GL L   L N+++D YVKC     AE+
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F  M  K  VS   M+  Y + G +  +  +F  LP K    WN +I G ++    + A
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           L L ++M A G   + +T    L   S L  L  G  IH  + K     +  +  +L+DM
Sbjct: 505 LELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDM 564

Query: 357 YAKCGNIAKALQVFHEMPERNSL---------------TYTAIIGGLALHGKALDAISYF 401
           Y KCG + KA  +F  +P+ +S+               ++++++ G   +G+  DA+  F
Sbjct: 565 YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLL 459
           S MI   +  D+ T   ++SAC   G+++ GR+       I ++   L  +  S ++D+ 
Sbjct: 625 SFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGY---IQKIGHGLDVFLGSSIIDMY 681

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL------DPQ 513
            + G L +A  LI +     +VV+W ++   C LHG      R A++L EL       P 
Sbjct: 682 VKCGSLNDA-WLIFNQAKDRNVVLWTSMISGCALHGQ----GREAVRLFELMINEGITPN 736

Query: 514 D-SGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           + S + VL A  +  + + EE  K  ++M E
Sbjct: 737 EVSFVGVLTACSH--AGLLEEGCKYFRLMRE 765



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%)

Query: 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407
           + G  L+++YAK  N+ +A ++F E+P+ +  ++T +I G A  G + D +  F++M   
Sbjct: 322 IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQ 381

Query: 408 GLMPDEITFLGILSAC 423
           G+ P++ T   +L +C
Sbjct: 382 GVCPNQFTLSIVLKSC 397


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/564 (32%), Positives = 306/564 (54%), Gaps = 54/564 (9%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           E K  +  +++   + + +  SWN  I G++  G     +++YKQM+   G   D  T  
Sbjct: 197 EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMY-LGIDVDLATII 255

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            +   CA+ G   LG  +    +K  F+  +   N ++ ++  CGDL  A  VF++   R
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           N+VSW S+I G+ R G    AIRL + M+ E V+ D V    ++ ACA+   L+ G+++H
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVH 375

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            YI  + +   + + NALMDMY KCG +                               D
Sbjct: 376 DYIKANNMESNLFVCNALMDMYTKCGSM-------------------------------D 404

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A  +F  +  K ++ WN +IG                      +KPD+ T    L AC+
Sbjct: 405 GANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACILPACA 443

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            L AL+ G  IH +I +  ++ +  +  ALVD+Y KCG +  A  +F  +P ++ +++T 
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I G  +HG   +AI+ F+EM   G+ PDE++F+ IL AC H GL+++G ++F  M + F
Sbjct: 504 MISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            + PKL+HY+CMVDLL R+G L +A + I ++P+A D  +WGAL   CR++ ++ + E+ 
Sbjct: 564 NIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKV 623

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A ++ EL+P+++G YVLLAN+Y ++  WEE  ++R+ + ++G+ K PGCS IE+ G +  
Sbjct: 624 AERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNL 683

Query: 564 FIV-RDKSHPELEQIYDCLVQLTR 586
           F+   + SHP  ++I   L ++ R
Sbjct: 684 FVSGNNSSHPHSKKIESLLKKMRR 707



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 167/354 (47%), Gaps = 56/354 (15%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  +LD   ++   +   N  SW   I G+   G+   A+ L +QM +  G + D    
Sbjct: 297 SKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKE-GVKLDVVAT 355

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA  G    G ++  ++     + +++V NA++ ++  CG +  A +VF    V
Sbjct: 356 TSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVV 415

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           ++++SWN++I                       ++PD  TM  ++ ACA L  L  G+EI
Sbjct: 416 KDIISWNTMIG---------------------ELKPDSRTMACILPACASLSALERGKEI 454

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H YI  +G +    +ANAL+D+YVKCG L  A  +FD + +K +VS T MI GY   G+ 
Sbjct: 455 HGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGY- 513

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                           EA+A F+EM+  GI+PD V+ +  L AC
Sbjct: 514 ------------------------------GNEAIATFNEMRDAGIEPDEVSFISILYAC 543

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP 374
           S  G L+ G W   +I K +FN+   L     +VD+ ++ GN++KA +    +P
Sbjct: 544 SHSGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 168/365 (46%), Gaps = 24/365 (6%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R +  +N+ I  F + G    A+ L      ++ E +  T   ++  CA  + L  G+++
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELV--CMCQKSELETKTYSSVLQLCAGSKSLTDGKKV 121

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  I  + + +   L   L+ +Y  CG L+    +FD+M  K V     M+  YAK G  
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 263 --------------------DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
                               + A ++FD L ++ V+ WN++I GYV    ++  L ++ +
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M   GI  D  T +  L  C+  G L  G  +H    K  F   +     L+DMY+KCG+
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGD 301

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  AL+VF +M ERN +++T++I G    G++  AI    +M   G+  D +    IL A
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHA 361

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C   G +D G+     + +   +   L   + ++D+  + G ++ A  +  +M +  D++
Sbjct: 362 CARSGSLDNGKDVHDYIKA-NNMESNLFVCNALMDMYTKCGSMDGANSVFSTM-VVKDII 419

Query: 483 VWGAL 487
            W  +
Sbjct: 420 SWNTM 424



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           ++ V  +NA I  + Q    + A+ L    Q + ++    ++V  L  C+   +L DG  
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYSSV--LQLCAGSKSLTDGKK 120

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  I+  N  ++ VLG  LV +YA CG++ +  +VF  M ++N   +  ++   A  G 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 394 ALDAISYFSEMIGVGLM----------------PDEITFLGILSACCHGGLVDEGRKYFA 437
             ++I  F  M+  G+                  D I++  ++S     GL + G + + 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 438 QM 439
           QM
Sbjct: 241 QM 242


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 187/522 (35%), Positives = 286/522 (54%), Gaps = 73/522 (13%)

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           E+   NLVSW+++I GF ++G+ +EA+ L   MQ    EP+  T+  ++ ACA+L++LNL
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKC------------------------------ 228
           G+EIH Y++  G      + N L+D+Y +C                              
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 229 -GKLESAEEIFDSM--VNKTVVSCTTMIVGYA----KFGFLDIARKIFDDLPEK------ 275
            G +E A+E+FD M  V K  +S  +MI GYA    K   L  A+  FD + E+      
Sbjct: 125 NGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWN 184

Query: 276 -----------------------------YVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
                                         V  WN II G+V+   ++ AL LF EMQ +
Sbjct: 185 VLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTS 244

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
            ++PD  T    L AC++L  +  G  +H    ++ + L+V +G ALVDMYAKCG+I  A
Sbjct: 245 SLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHA 304

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
           +QV++ +   N ++  A++   A+HG   + I+ F  M+G G  PD +TFL +LS+C H 
Sbjct: 305 MQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHA 364

Query: 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
           G V+ G ++F  M+  + ++P LKHY+C+VDLL R+G L+EA +L++ +P   D V+WGA
Sbjct: 365 GAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGA 423

Query: 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           L   C + GNV +GE AA  L+EL+P ++G YVLLAN+Y  +  W +  + R+M+++RG+
Sbjct: 424 LLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGM 483

Query: 547 EKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            K+PGCS IE    ++ F+  DKSH + E IY  L  L  H 
Sbjct: 484 HKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHM 525



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 166/370 (44%), Gaps = 47/370 (12%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           KI       N  S+N  I G+ E G + +A +L+ QM   G    D  ++  +    A  
Sbjct: 102 KIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVG---KDTISWNSMISGYADN 158

Query: 93  GLRFLGYEIFGHVLKLGFD----VDMYVHNAVIHVFVSCGDLGLACNVFD----ESCVRN 144
            L+    +      +L FD     D    N +I  +  C  L    N+      +    N
Sbjct: 159 LLKCEDLK----AAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPN 214

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           + +WN +I+G V +G    A+RLF +MQ   + PD  T+  ++ ACA+L  +  G+++H 
Sbjct: 215 VYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHA 274

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           +    G  L V +  AL+DMY KCG ++ A ++++ + N  +VS   M+  YA  G  D 
Sbjct: 275 HSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGD- 333

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                                         E +ALF  M   G +PD VT +  LS+C  
Sbjct: 334 ------------------------------EGIALFRNMLGNGFRPDHVTFLSVLSSCVH 363

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTA 383
            GA++ G      +   N   ++   T +VD+ ++ G + +A ++  ++P + +S+ + A
Sbjct: 364 AGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGA 423

Query: 384 IIGGLALHGK 393
           ++GG  + G 
Sbjct: 424 LLGGCVIWGN 433


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/585 (33%), Positives = 313/585 (53%), Gaps = 44/585 (7%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  ++  +  G    A++LY+ M R  G   D +  PL+ + C  LG   L       V
Sbjct: 126 WNSILKANVSHGLYENALELYRGM-RQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQV 184

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
           +++G   +++V N ++ ++   G +G A N+F E  VRN +SWN +I GF +      A+
Sbjct: 185 IQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAV 244

Query: 166 RLFRDMQLERVEPDEVTMIGMVS-----------------------------------AC 190
           ++F  MQ E  +PDEVT   ++S                                    C
Sbjct: 245 KIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVC 304

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A+LE L++  ++H Y+ + G    +P  NAL+ +Y K GK++ AE +F  + NK + S  
Sbjct: 305 AELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWN 364

Query: 251 TMIVGYAKFGFLDIARKIFDDLPE--------KYVVPWNAIIGGYVQAKRSKEALALFHE 302
           ++I  +   G LD A  +F +L E          VV W ++I G     R  ++L  F +
Sbjct: 365 SLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQ 424

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           MQ + +  ++VT    LS C++L AL+ G  IH  + + + + N+++  ALV+MYAKCG 
Sbjct: 425 MQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGL 484

Query: 363 IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +++   VF  + +++ +++ +II G  +HG A  A+S F  MI  G  PD I  + +LSA
Sbjct: 485 LSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSA 544

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV 482
           C H GLV++GR+ F  MS  F L P+ +HY+C+VDLLGR G L+EA +++++MPM   V 
Sbjct: 545 CSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVC 604

Query: 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542
           V GAL  +CR+H NV I E  A +L  L+P+ +G Y+LL+N+Y     WEE+  VR + +
Sbjct: 605 VLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAK 664

Query: 543 ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           ++ ++K  G S IEV    Y+F        E E IY  L  L  H
Sbjct: 665 KKDLKKVSGSSWIEVKKKKYKFSSGSIVQSEFETIYPVLEDLVSH 709



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 173/409 (42%), Gaps = 109/409 (26%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY------------------- 82
           N  SWNV I+GF +      AV +++ M R    +PD  T+                   
Sbjct: 223 NRMSWNVMIKGFSQEYDCESAVKIFEWMQRE-EFKPDEVTWTSVLSCHSQCGKFEDVLKY 281

Query: 83  ----------------PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
                            + F VCA L    +  ++ G+V+K GF+  +   NA+IHV+  
Sbjct: 282 FHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGK 341

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL------------------- 167
            G +  A ++F +   + + SWNSLI  FV +G   EA+ L                   
Sbjct: 342 QGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVT 401

Query: 168 --------------------FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
                               FR MQ  +V  + VT+  ++S CA+L  LNLGREIH ++ 
Sbjct: 402 WTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVI 461

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
            + ++  + + NAL++MY KCG L     +F+++ +K ++S  ++I GY   GF      
Sbjct: 462 RTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGF------ 515

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                    +++AL++F  M ++G  PD +  V  LSACS  G 
Sbjct: 516 -------------------------AEKALSMFDRMISSGFHPDGIALVAVLSACSHAGL 550

Query: 328 LDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP 374
           ++ G  I   + K  F L         +VD+  + G + +A ++   MP
Sbjct: 551 VEKGREIFYSMSKR-FGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMP 598



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 18  AFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP 77
           A    SE + +++   +  NV      +W   I+G    G+  ++++ ++QM +      
Sbjct: 379 ALSLFSELEEMNHVCNVKANV-----VTWTSVIKGCNVQGRGDDSLEYFRQM-QFSKVLA 432

Query: 78  DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVF 137
           ++ T   +  +CA L    LG EI GHV++     ++ V NA+++++  CG L     VF
Sbjct: 433 NSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVF 492

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
           +    ++L+SWNS+I G+   GF  +A+ +F  M      PD + ++ ++SAC+    + 
Sbjct: 493 EAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVE 552

Query: 198 LGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            GREI + +S+  GL         ++D+  + G L+ A EI  +M
Sbjct: 553 KGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNM 597


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 292/515 (56%), Gaps = 34/515 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SWN AI  FL  G   + + ++++M  +    P + T   L      LG   LG E+
Sbjct: 106 NEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN-VMPGSITLSSLLPALVELGSFDLGREV 164

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G+ +K   D+D++V N+++ ++   G L  A  +F++   RN+VSWN++I   V++G  
Sbjct: 165 HGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAE 224

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA RL  DMQ     P+ +T++ ++ ACA++  L +G++IH +    GL   + ++NAL
Sbjct: 225 TEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNAL 284

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG+L                                +AR IF+   EK  V +N
Sbjct: 285 IDMYSKCGQLS-------------------------------LARNIFER-SEKDDVSYN 312

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            +I GY Q+    E+L LF +M++ GI  DAV+ +  LSAC+ L     G  IH  + + 
Sbjct: 313 TLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRR 372

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             + +  L  +L+D+Y K G +  A ++F+++ +++  ++  +I G  +HG+   A   F
Sbjct: 373 LLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELF 432

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M G GL  D ++++ +L+AC HGGLVD+G+KYF+QM +   + P+  HY+CMVDLLGR
Sbjct: 433 ELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGR 491

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L +  ++IR MP  A+  VWGAL  ACR+HGN+ + + AA  L EL P+ SG Y L+
Sbjct: 492 AGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLM 551

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
            NMY ++  W EA K+RK+M+ R V+K P  S ++
Sbjct: 552 INMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 586



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 228/478 (47%), Gaps = 55/478 (11%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPL-------LFKVCASLGLRFL 97
           SWN  +  FL  G   +A      M+R+G        +PL       +   C +      
Sbjct: 8   SWNSLVSAFLVNGMFHDARRALVSMMRSG--------FPLNVASLVSVVPACGTEQEEKF 59

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  I    +K+G +  + + NA++ ++   GD+  +  VFD    +N VSWNS I  F+ 
Sbjct: 60  GLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLN 119

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +GF  + +R+FR M    V P  +T+  ++ A  +L   +LGRE+H Y  +  + L + +
Sbjct: 120 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 179

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           AN+L+DMY K G LE A  IF+ M ++ VVS                             
Sbjct: 180 ANSLVDMYAKFGSLEKASTIFEQMKDRNVVS----------------------------- 210

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
             WNA+I   VQ     EA  L  +MQ +G  P+++T V+ L AC+++ +L  G  IH +
Sbjct: 211 --WNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAW 268

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
             +     ++ +  AL+DMY+KCG ++ A  +F E  E++ ++Y  +I G +      ++
Sbjct: 269 SIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQSPWCFES 327

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-YFAQMSSIFRLSPKLKHYSCMV 456
           +  F +M  VG+  D ++F+G LSAC +  +   G++ +   +  +    P L +   ++
Sbjct: 328 LLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN--SLL 385

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           DL  + G+L  A ++   +    DV  W  +     +HG + I    A +L EL   D
Sbjct: 386 DLYTKGGMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDI----AFELFELMKGD 438



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 160/330 (48%), Gaps = 34/330 (10%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++VSWNSL++ F+ +G   +A R    M       +  +++ +V AC   ++   G  I
Sbjct: 4   RDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI 63

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    + GL   V LANAL+DMY K G +E++ ++FD M+ +  VS              
Sbjct: 64  HALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVS-------------- 109

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                            WN+ IG ++ A    + L +F +M    + P ++T    L A 
Sbjct: 110 -----------------WNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPAL 152

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
            +LG+ D G  +H +  K   +L++ +  +LVDMYAK G++ KA  +F +M +RN +++ 
Sbjct: 153 VELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWN 212

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           A+I  L  +G   +A    ++M   G  P+ IT + +L AC     +  G++  A   SI
Sbjct: 213 AMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAW--SI 270

Query: 443 FR-LSPKLKHYSCMVDLLGRSGLLEEAEQL 471
            R L   L   + ++D+  + G L  A  +
Sbjct: 271 RRGLMFDLFISNALIDMYSKCGQLSLARNI 300



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 9/246 (3%)

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +PE+ VV WN+++  ++      +A      M  +G   +  + V  + AC        G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
           + IH    K   N  V L  ALVDMY K G++  ++QVF  M E+N +++ + IG     
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLK 450
           G   D +  F +M    +MP  IT   +L A    G  D GR+      SI R +   + 
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGY--SIKRAMDLDIF 178

Query: 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510
             + +VD+  + G LE+A  +   M    +VV W A+      +G     E  A +L+  
Sbjct: 179 VANSLVDMYAKFGSLEKASTIFEQMK-DRNVVSWNAMIANLVQNG----AETEAFRLVT- 232

Query: 511 DPQDSG 516
           D Q SG
Sbjct: 233 DMQKSG 238



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 129/282 (45%), Gaps = 7/282 (2%)

Query: 35  LFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGL 94
           +F     +  S+N  I G+ ++    E++ L+KQM R+ G   D  ++      C +L +
Sbjct: 300 IFERSEKDDVSYNTLILGYSQSPWCFESLLLFKQM-RSVGIDYDAVSFMGALSACTNLSV 358

Query: 95  RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING 154
              G EI   +++       ++ N+++ ++   G L  A  +F++   +++ SWN++I G
Sbjct: 359 FKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILG 418

Query: 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
           +   G    A  LF  M+ + ++ D V+ I +++AC+    ++ G++    +    +   
Sbjct: 419 YGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQ 478

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-GFLDIAR----KIF 269
                 ++D+  + G+L    EI   M           ++G  +  G +++A+     +F
Sbjct: 479 QMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLF 538

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311
           +  PE +   +  +I  Y +  R  EA  +   M++  ++ +
Sbjct: 539 ELKPE-HSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKN 579


>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 170/417 (40%), Positives = 257/417 (61%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+   WN++I  F     PR+AI LF++M      P+  T   +  AC  L +L LG   
Sbjct: 74  RSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLAC 133

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    + G      + N L+ M+   G ++SA ++FD   N+ V++ T +I GY + G +
Sbjct: 134 HCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQV 193

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
            I R++FD +PE+  V W+A+I GYV+    +EAL LF+ M  +G  P+    V  ++AC
Sbjct: 194 LIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINAC 253

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           + LGALD G WIH +I++   +L+ V+G AL+DMYAKCG I  A  +F E+  R+   YT
Sbjct: 254 ASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYT 313

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
            +I GLA HG++  A+  F  M   G++P+E+TF+ +L+AC   GLVD+G + F  MS I
Sbjct: 314 CLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKI 373

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           +   P+++HY C+VDLLGR+G LEEA++L++ MPM  D  V GAL  A R++G+V +GE 
Sbjct: 374 YGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEE 433

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
               L +L    SG++V+L+NMY  +N W+E  +VR+ M ++ V K PGCS I+V+G
Sbjct: 434 TVESLAQLSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVDG 490



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 207/426 (48%), Gaps = 66/426 (15%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESK-NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
           +T++G +   +A +++I+FCA+S ++ +L +  ++   +++ ++F WN  IR F E  + 
Sbjct: 33  LTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEP 92

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           R+A+ L+K ML +    P+N+TY  LFK C  L   +LG       +KLG++   +V N 
Sbjct: 93  RKAIMLFKNMLYSNFL-PNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQNG 151

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-------------------- 159
           ++H+F   G +  A  +FD S  R++++W +LING+VR+G                    
Sbjct: 152 LVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSW 211

Query: 160 -----------FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                      F  EA+ LF  M +    P+   ++  ++ACA L  L+ GR IH YI  
Sbjct: 212 SAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKR 271

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           + + L   +  AL+DMY KCG +E A  IF  + N+ V   T +I G A  G        
Sbjct: 272 NRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHG-------- 323

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                  +S  A+ LF  M + G+ P+ VT V  L+ACS++G +
Sbjct: 324 -----------------------QSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLV 360

Query: 329 DDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIG 386
           D G+ I   + K       V     LVD+  + G + +A ++  EMP + +S    A++ 
Sbjct: 361 DKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLN 420

Query: 387 GLALHG 392
              ++G
Sbjct: 421 ASRVYG 426


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 294/499 (58%), Gaps = 38/499 (7%)

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ V+ +CG+ GLA ++FDE   +N+V +N +I  +V +   ++A+ +++ M  +   PD
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   ++ A ++ + L +G +IH  + + GL L + + N L+ MY KC  L+ A+++ D
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLD 179

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIA---------------------------------- 265
            +  + VVS  +M+  YA+ G  + A                                  
Sbjct: 180 EIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNV 239

Query: 266 ---RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
              +++F  L +K V+ WN +I  YV     KEA+ L+ +M+A G++PD V+ V  L A 
Sbjct: 240 LYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAY 299

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             L AL  G  +H+F E++    N++L  AL+DMYAKCG +  A  VF++M  R+ +++T
Sbjct: 300 GDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWT 359

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
           +II      G+  DA++ F+EM   GL PD I F+ +L+AC H GL+D+GR YF  M+  
Sbjct: 360 SIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC 419

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
             ++PKL+H++C+VDLLGR+G ++EA   IR MP+  D  VWG L  ACR++ N++IG  
Sbjct: 420 -GITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGIL 478

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA KLL L+P+ SG YVLL+N+Y  +  W +   +R +ME +G++K PG S++E+N  ++
Sbjct: 479 AADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVH 538

Query: 563 EFIVRDKSHPELEQIYDCL 581
            F+  D SHP+ ++IY+ L
Sbjct: 539 TFLAGDHSHPQSKKIYEEL 557



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 215/474 (45%), Gaps = 70/474 (14%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           I   + + N   +NV IR ++     ++A+ +YK M   G   PD +TYP + K  +   
Sbjct: 76  IFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFV-PDMYTYPCVLKASSRSD 134

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
             ++G +I G VLK+G D+++YV N +I ++  C  L  A  V DE   R++VSWNS+++
Sbjct: 135 SLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVS 194

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
            + ++G   +A+ L R+M+   ++P++ TM  ++ A       N+      Y+ E  L L
Sbjct: 195 VYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNV-----LYVKEMFLKL 249

Query: 214 T---VPLANALMDMYVKCGKLESAEEIFDSM----VNKTVVSCTTMIVG----------- 255
           T   V   N ++ MYV     + A  ++  M    V   VVS  +++             
Sbjct: 250 TKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGR 309

Query: 256 ------------------------YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
                                   YAK G L  AR +F+ +  + VV W +II  Y +  
Sbjct: 310 RVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCG 369

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
           + ++A+A+F EM+ +G+ PD++  V  L+ACS  G LDDG +    + +      +    
Sbjct: 370 QGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFA 429

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            +VD+  + G I +A     +MP E +   +          G  L A   +S M      
Sbjct: 430 CVVDLLGRAGKIDEAYGFIRQMPLEPDERVW----------GPLLSACRVYSNM------ 473

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
                 +GIL+A     L  E   Y+  +S+I+  + +    + +  ++ R G+
Sbjct: 474 -----NIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGI 522



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           + S N+ Y  ++   +   +  SWNV I  ++     +EAV LY QM  N G  PD  + 
Sbjct: 234 TTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEAN-GVEPDVVSI 292

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +      L    LG  +     +     ++ + NA+I ++  CG L  A  VF++   
Sbjct: 293 VSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQF 352

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++VSW S+I+ + + G  R+A+ +F +M+   + PD +  + +++AC+    L+ GR  
Sbjct: 353 RDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYY 412

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESA 234
              ++E G+T  +     ++D+  + GK++ A
Sbjct: 413 FNLMAECGITPKLEHFACVVDLLGRAGKIDEA 444



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           + +  +    N  +G  L+ +YA CG    A  +F E+ ++N + +  +I     +    
Sbjct: 43  KVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYK 102

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--S 453
           DA+  +  M   G +PD  T+  +L A      +  G +      ++ ++   L  Y  +
Sbjct: 103 DALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHG---AVLKIGLDLNLYVGN 159

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG--NVSIGERAAMKLLELD 511
            ++ + G+   L+EA+Q++  +P   DVV W ++      +G  N ++     M+ L L 
Sbjct: 160 GLIAMYGKCKSLKEAQQVLDEIP-CRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLK 218

Query: 512 PQDSGIYVLL 521
           P D  +  LL
Sbjct: 219 PNDCTMASLL 228


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 292/515 (56%), Gaps = 34/515 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SWN AI  FL  G   + + ++++M  +    P + T   L      LG   LG E+
Sbjct: 285 NEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN-VMPGSITLSSLLPALVELGSFDLGREV 343

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G+ +K   D+D++V N+++ ++   G L  A  +F++   RN+VSWN++I   V++G  
Sbjct: 344 HGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAE 403

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA RL  DMQ     P+ +T++ ++ ACA++  L +G++IH +    GL   + ++NAL
Sbjct: 404 TEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNAL 463

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY KCG+L                                +AR IF+   EK  V +N
Sbjct: 464 IDMYSKCGQLS-------------------------------LARNIFER-SEKDDVSYN 491

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            +I GY Q+    E+L LF +M++ GI  DAV+ +  LSAC+ L     G  IH  + + 
Sbjct: 492 TLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRR 551

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             + +  L  +L+D+Y K G +  A ++F+++ +++  ++  +I G  +HG+   A   F
Sbjct: 552 LLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELF 611

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M G GL  D ++++ +L+AC HGGLVD+G+KYF+QM +   + P+  HY+CMVDLLGR
Sbjct: 612 ELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGR 670

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L +  ++IR MP  A+  VWGAL  ACR+HGN+ + + AA  L EL P+ SG Y L+
Sbjct: 671 AGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLM 730

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
            NMY ++  W EA K+RK+M+ R V+K P  S ++
Sbjct: 731 INMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/518 (27%), Positives = 244/518 (47%), Gaps = 57/518 (11%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G ++  F  + L+AF A    K  D   ++   +   +  SWN  +  FL  G   +A  
Sbjct: 149 GHLADVFTGNTLVAFYAAC-GKACD-ARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARR 206

Query: 65  LYKQMLRNGGTRPDNFTYPL-------LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH 117
               M+R+G        +PL       +   C +      G  I    +K+G +  + + 
Sbjct: 207 ALVSMMRSG--------FPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLA 258

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           NA++ ++   GD+  +  VFD    +N VSWNS I  F+ +GF  + +R+FR M    V 
Sbjct: 259 NALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVM 318

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           P  +T+  ++ A  +L   +LGRE+H Y  +  + L + +AN+L+DMY K G LE A  I
Sbjct: 319 PGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTI 378

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F+ M ++ VVS                               WNA+I   VQ     EA 
Sbjct: 379 FEQMKDRNVVS-------------------------------WNAMIANLVQNGAETEAF 407

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
            L  +MQ +G  P+++T V+ L AC+++ +L  G  IH +  +     ++ +  AL+DMY
Sbjct: 408 RLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMY 467

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +KCG ++ A  +F E  E++ ++Y  +I G +      +++  F +M  VG+  D ++F+
Sbjct: 468 SKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFM 526

Query: 418 GILSACCHGGLVDEGRK-YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           G LSAC +  +   G++ +   +  +    P L   + ++DL  + G+L  A ++   + 
Sbjct: 527 GALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLS--NSLLDLYTKGGMLVTASKIFNKIT 584

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
              DV  W  +     +HG + I    A +L EL   D
Sbjct: 585 -KKDVASWNTMILGYGMHGQIDI----AFELFELMKGD 617



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 205/433 (47%), Gaps = 37/433 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF--LGY 99
           ++F WN   R         EA+ +Y  MLR+   RPD+ T+P      A+        G 
Sbjct: 81  SAFLWNSLSRALSSASLPSEALRVYNLMLRSA-VRPDDRTFPFALHAAAAAVASAEDKGL 139

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           E+    L+ G   D++  N ++  + +CG    A  VFDE   R++VSWNSL++ F+ +G
Sbjct: 140 ELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNG 199

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              +A R    M       +  +++ +V AC   ++   G  IH    + GL   V LAN
Sbjct: 200 MFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLAN 259

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           AL+DMY K G +E++ ++FD M+ +  VS                               
Sbjct: 260 ALVDMYGKFGDVEASMQVFDGMLEQNEVS------------------------------- 288

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN+ IG ++ A    + L +F +M    + P ++T    L A  +LG+ D G  +H +  
Sbjct: 289 WNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSI 348

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K   +L++ +  +LVDMYAK G++ KA  +F +M +RN +++ A+I  L  +G   +A  
Sbjct: 349 KRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFR 408

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLKHYSCMVDL 458
             ++M   G  P+ IT + +L AC     +  G++  A   SI R L   L   + ++D+
Sbjct: 409 LVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAW--SIRRGLMFDLFISNALIDM 466

Query: 459 LGRSGLLEEAEQL 471
             + G L  A  +
Sbjct: 467 YSKCGQLSLARNI 479



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 153/380 (40%), Gaps = 46/380 (12%)

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM----IGMVSACAQLEDLN 197
           +R+   WNSL      +  P EA+R++  M    V PD+ T         +A A  ED  
Sbjct: 79  LRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAED-- 136

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G E+H      G    V   N L+  Y  CGK   A  +FD M  + VVS         
Sbjct: 137 KGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVS--------- 187

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
                                 WN+++  ++      +A      M  +G   +  + V 
Sbjct: 188 ----------------------WNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVS 225

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            + AC        G+ IH    K   N  V L  ALVDMY K G++  ++QVF  M E+N
Sbjct: 226 VVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQN 285

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
            +++ + IG     G   D +  F +M    +MP  IT   +L A    G  D GR+   
Sbjct: 286 EVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHG 345

Query: 438 QMSSIFR-LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
              SI R +   +   + +VD+  + G LE+A  +   M    +VV W A+      +G 
Sbjct: 346 Y--SIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK-DRNVVSWNAMIANLVQNG- 401

Query: 497 VSIGERAAMKLLELDPQDSG 516
               E  A +L+  D Q SG
Sbjct: 402 ---AETEAFRLVT-DMQKSG 417



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 15/257 (5%)

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            +++ YA    L  AR +    P +      WN++      A    EAL +++ M  + +
Sbjct: 54  ALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAV 113

Query: 309 KPDAVTTVHCLSACSQLGAL--DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366
           +PD  T    L A +   A   D G+ +H    +     +V  G  LV  YA CG    A
Sbjct: 114 RPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAFYAACGKACDA 173

Query: 367 LQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426
            +VF EMPER+ +++ +++    ++G   DA      M+  G   +  + + ++ AC   
Sbjct: 174 RRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACG-- 231

Query: 427 GLVDEGRKYFAQMSSI---FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
              ++  K+   + ++     L+  +   + +VD+ G+ G +E + Q+   M +  + V 
Sbjct: 232 --TEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGM-LEQNEVS 288

Query: 484 WGAL---FFACRLHGNV 497
           W +    F     +G+V
Sbjct: 289 WNSAIGCFLNAGFYGDV 305


>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
          Length = 485

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 180/447 (40%), Positives = 270/447 (60%), Gaps = 4/447 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
            ++S     VSW S I    R+G   EA + F  M+L  VEP+ +T+I ++S CA  E  
Sbjct: 21  LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCEPF 80

Query: 197 NLGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
             G  +H Y  + GL    V +  A++ MY K  +   A  +FD + +K  V+  TMI G
Sbjct: 81  --GDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDG 138

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y + G +D A K+FD++PE+ ++ W A+I G+V+    +EALA F EMQ +G+KPD V  
Sbjct: 139 YMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAV 198

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  L+AC+ LGAL  G+W+HRF+  ++F  NV +  +L+D+Y +CG +  A QVF EM +
Sbjct: 199 IAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEK 258

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R  +++ ++I G A +G A +++ YF  M      PD +TF G L+AC H GLV+EG +Y
Sbjct: 259 RTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVRY 318

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M   +R+SP+++HY C+VDL  R+G LEEA +++ SMPM  + VV G+L  ACR HG
Sbjct: 319 FEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGSLLAACRTHG 378

Query: 496 N-VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           N   + ER   +L EL  +    YV+L+NMY     WE A K+R+ M+  G++K PG SS
Sbjct: 379 NDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKGLGLKKQPGFSS 438

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCL 581
           IE++   + F+  D +H E   I + L
Sbjct: 439 IEIDDRTHVFMAGDSAHVENGYIREVL 465



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 179/387 (46%), Gaps = 74/387 (19%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102
           + SW   I      G++ EA   +  M R  G  P++ T   L   CA       G  + 
Sbjct: 29  TVSWTSRITLLSRNGRLAEAAKEFTAM-RLAGVEPNHITLIALLSGCADC--EPFGDSLH 85

Query: 103 GHVLKLGFDVD----------MYVH----------------------NAVIHVFVSCGDL 130
           G+  KLG D +          MY                        N +I  ++  G +
Sbjct: 86  GYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRV 145

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  VFDE   R+L+SW ++INGFV+ G   EA+  FR+MQ+  V+PD V +I  ++AC
Sbjct: 146 DDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAAC 205

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A L  L+ G  +H ++        V ++N+L+D+Y +CG +E A ++FD M  +TVVS  
Sbjct: 206 ANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWN 265

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++IVG+A  G                                + E+L  F  MQ    KP
Sbjct: 266 SVIVGFAANGH-------------------------------AHESLVYFRRMQEERFKP 294

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLGT--ALVDMYAKCGNIAKA 366
           DAVT    L+ACS +G +++G+   R+ E  K ++ ++  +     LVD+Y++ G + +A
Sbjct: 295 DAVTFTGALTACSHVGLVEEGV---RYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEA 351

Query: 367 LQVFHEMPER-NSLTYTAIIGGLALHG 392
           L+V   MP + N +   +++     HG
Sbjct: 352 LKVVESMPMKPNEVVIGSLLAACRTHG 378



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 2/221 (0%)

Query: 25  SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPL 84
           S  +D   K+   +   +  SW   I GF++ G   EA+  +++M +  G +PD      
Sbjct: 142 SGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREM-QVSGVKPDYVAVIA 200

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
               CA+LG    G  +   V+   F  ++ V N++I ++  CG +  A  VFDE   R 
Sbjct: 201 ALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRT 260

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REIH 203
           +VSWNS+I GF  +G   E++  FR MQ ER +PD VT  G ++AC+ +  +  G R   
Sbjct: 261 VVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFE 320

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
               +  ++  +     L+D+Y + G+LE A ++ +SM  K
Sbjct: 321 AMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMK 361


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 197/544 (36%), Positives = 292/544 (53%), Gaps = 36/544 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF-KVCASLGLRFLGYEIFG 103
           SWN  + GF ++G +     L + M R  G RPD  T  LL   +     L  LG  ++ 
Sbjct: 121 SWNAMLLGFAQSGFLDRLSCLLRHM-RLSGIRPDAVTVLLLIDSILRVKSLTSLG-AVYS 178

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE--SCVRNLVSWNSLINGFVRSGFP 161
             +++G  +D+ V N +I  +  CG+L  A  +FDE  S +R++VSWNS+I  +      
Sbjct: 179 FGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKH 238

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            +A+  ++ M      PD  T++ ++S+C Q + L  G  +H +  + G    V + N L
Sbjct: 239 VKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTL 298

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           + MY KCG + SA                               R +F+ + +K  V W 
Sbjct: 299 ICMYSKCGDVHSA-------------------------------RFLFNGMSDKTCVSWT 327

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
            +I  Y +     EA+ LF+ M+A G KPD VT +  +S C Q GAL+ G WI  +    
Sbjct: 328 VMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINN 387

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               NVV+  AL+DMYAKCG    A ++F+ M  R  +++T +I   AL+G   DA+  F
Sbjct: 388 GLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELF 447

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
             M+ +G+ P+ ITFL +L AC HGGLV+ G + F  M+  + ++P + HYSCMVDLLGR
Sbjct: 448 FMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGR 507

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
            G L EA ++I+SMP   D  +W AL  AC+LHG + +G+  + +L EL+PQ +  YV +
Sbjct: 508 KGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEM 567

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y  + MWE    +R+ M+   V K+PG S I+VNG    F V D+ HPE   IYD L
Sbjct: 568 ANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIFTVEDRDHPETLYIYDML 627

Query: 582 VQLT 585
             LT
Sbjct: 628 DGLT 631



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 237/479 (49%), Gaps = 36/479 (7%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F+WN   R  +  G  + A+ L++QM +  G  P+N T+P + K CA L        I  
Sbjct: 19  FTWNSNFRHLVNQGHAQNALILFRQM-KQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           HVLK  F  +++V  A + ++V CG L  A NVF E  VR++ SWN+++ GF +SGF   
Sbjct: 78  HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDR 137

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
              L R M+L  + PD VT++ ++ +  +++ L     ++ +    G+ + V +AN L+ 
Sbjct: 138 LSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIA 197

Query: 224 MYVKCGKLESAEEIFDSMVN--KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
            Y KCG L SAE +FD + +  ++VVS  +MI  YA F              EK+V    
Sbjct: 198 AYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANF--------------EKHV---- 239

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                        +A+  +  M   G  PD  T ++ LS+C Q  AL  G+ +H    K 
Sbjct: 240 -------------KAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKL 286

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             + +V +   L+ MY+KCG++  A  +F+ M ++  +++T +I   A  G   +A++ F
Sbjct: 287 GCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLF 346

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           + M   G  PD +T L ++S C   G ++ G K+    S    L   +   + ++D+  +
Sbjct: 347 NAMEAAGEKPDLVTVLALISGCGQTGALELG-KWIDNYSINNGLKDNVVVCNALIDMYAK 405

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
            G   +A++L  +M     VV W  +  AC L+G+V         +LE+  + + I  L
Sbjct: 406 CGGFNDAKELFYTMA-NRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFL 463



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 168/397 (42%), Gaps = 76/397 (19%)

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           L +WNS     V  G  + A+ LFR M+   + P+  T   ++ ACA+L  L   + IH 
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           ++ +S     + +  A +DMYVKCG+LE A  +F  M  + + S   M++G+A+ GFLD 
Sbjct: 78  HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLD- 136

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                                             L   M+ +GI+PDAVT +  + +  +
Sbjct: 137 ------------------------------RLSCLLRHMRLSGIRPDAVTVLLLIDSILR 166

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYT 382
           + +L     ++ F  +   +++V +   L+  Y+KCGN+  A  +F E+    R+ +++ 
Sbjct: 167 VKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWN 226

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-------------CHG--- 426
           ++I   A   K + A++ +  M+  G  PD  T L +LS+C              HG   
Sbjct: 227 SMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKL 286

Query: 427 -------------------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467
                              G V   R  F  MS    +S     ++ M+      G + E
Sbjct: 287 GCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVS-----WTVMISAYAEKGYMSE 341

Query: 468 AEQLIRSMPMAA---DVVVWGALFFACRLHGNVSIGE 501
           A  L  +M  A    D+V   AL   C   G + +G+
Sbjct: 342 AMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGK 378


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 293/557 (52%), Gaps = 32/557 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D  + I   + + +  SWN  I G +  G    A++L  QM +  G  P+ FT   + K
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM-KYSGLVPNVFTLSSILK 311

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+  G   LG +I G ++K   D D Y+   ++ ++     L  A  VFD    R+L+ 
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
            N+LI+G    G   EA+ LF +++ E +  +  T+  ++ + A LE  +  R++H    
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G      + N L+D Y KC  L  A  +F+   +  +++CT+MI   +          
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALS---------- 481

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                Q    + A+ LF EM   G++PD       L+AC+ L A
Sbjct: 482 ---------------------QCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSA 520

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G  +H  + K  F  +   G ALV  YAKCG+I  A   F  +PER  ++++A+IGG
Sbjct: 521 YEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGG 580

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA HG    A+  F  M+  G+ P+ IT   +L AC H GLVDE ++YF  M  +F +  
Sbjct: 581 LAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 640

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HYSCM+DLLGR+G L++A +L+ SMP  A+  +WGAL  A R+H +  +G+ AA KL
Sbjct: 641 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKL 700

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             L+P+ SG +VLLAN Y  + MW E  KVRK+M++  ++K P  S IEV   ++ FIV 
Sbjct: 701 FILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVG 760

Query: 568 DKSHPELEQIYDCLVQL 584
           DKSHP  ++IY  LV+L
Sbjct: 761 DKSHPMTKEIYAKLVEL 777



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 37/394 (9%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + +F+ + +P   SW+  +  +   G  R A+  +  M R  G   + F  P++ K  
Sbjct: 55  CARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAEGVCCNEFALPVVLKCV 113

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES-CVRNLVSW 148
               L   G ++    +  GF  D++V NA++ ++   G +  A  VF+E+   RN VSW
Sbjct: 114 PDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSW 170

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N L++ +V++    +AI++F +M    ++P E     +V+AC    ++  GR++H  +  
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR 230

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    V  ANAL+DMY+K G+++ A  IF+ M                           
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKM--------------------------- 263

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
               P+  VV WNA+I G V       A+ L  +M+ +G+ P+  T    L ACS  GA 
Sbjct: 264 ----PDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           D G  IH F+ K N + +  +G  LVDMYAK   +  A +VF  M  R+ +   A+I G 
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGC 379

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  G+  +A+S F E+   GL  +  T   +L +
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 215/462 (46%), Gaps = 37/462 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SWN  +  +++  +  +A+ ++ +M+ +G  +P  F +  +   C        G ++
Sbjct: 166 NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+++G+D D++  NA++ +++  G + +A  +F++    ++VSWN+LI+G V +G  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             AI L   M+   + P+  T+  ++ AC+     +LGR+IH ++ ++       +   L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY K   L+ A ++FD M ++ ++ C                               N
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILC-------------------------------N 373

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G     R  EAL+LF+E++  G+  +  T    L + + L A      +H    K 
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  +  +   L+D Y KC  ++ A +VF E    + +  T++I  L+       AI  F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM+  GL PD      +L+AC      ++G++  A +     +S      + +V    +
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAK 552

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            G +E+AE    S+P    VV W A+      HG+   G+RA
Sbjct: 553 CGSIEDAELAFSSLPERG-VVSWSAMIGGLAQHGH---GKRA 590



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 194/427 (45%), Gaps = 45/427 (10%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N +I  +  C     A  VFDE      VSW+SL+  +  +G PR AI+ F  M+ E V 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            +E  +  +V  C  + D  LG ++H     +G    V +ANAL+ MY            
Sbjct: 101 CNEFAL-PVVLKC--VPDARLGAQVHAMAMATGFGSDVFVANALVAMY------------ 145

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL-PEKYVVPWNAIIGGYVQAKRSKEA 296
                                FGF+D AR++F++   E+  V WN ++  YV+  +  +A
Sbjct: 146 -------------------GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDA 186

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           + +F EM  +GI+P        ++AC+    ++ G  +H  + +  ++ +V    ALVDM
Sbjct: 187 IQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDM 246

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y K G +  A  +F +MP+ + +++ A+I G  L+G    AI    +M   GL+P+  T 
Sbjct: 247 YMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRS 474
             IL AC   G  D GR+    M    + +     Y    +VD+  ++  L++A ++   
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDW 363

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-YVLLANMYRDSNMWEE 533
           M    D+++  AL   C  HG     + A     EL  +  G+    LA + + +   E 
Sbjct: 364 M-FHRDLILCNALISGCS-HGGRH--DEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 534 AGKVRKM 540
           A   R++
Sbjct: 420 ASTTRQV 426



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 50/325 (15%)

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A  + L  G  +H  + +SG   +    N L+  Y KC +   A  +FD           
Sbjct: 15  AAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVFD----------- 61

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                               ++P+   V W++++  Y      + A+  FH M+A G+  
Sbjct: 62  --------------------EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCC 101

Query: 311 D--AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           +  A+  V      ++LGA      +H       F  +V +  ALV MY   G +  A +
Sbjct: 102 NEFALPVVLKCVPDARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 369 VFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           VF+E   ERN++++  ++     + +  DAI  F EM+  G+ P E  F  +++AC    
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYS--CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            ++ GR+  A    + R+      ++   +VD+  + G ++ A  +   MP  +DVV W 
Sbjct: 217 NIEAGRQVHAM---VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWN 272

Query: 486 ALFFACRLHGNVSIGERAAMKLLEL 510
           AL   C L+G+     RA   LL++
Sbjct: 273 ALISGCVLNGH---DHRAIELLLQM 294


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 282/492 (57%), Gaps = 51/492 (10%)

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
           F+G  +     KLG+D D                   A  +FDE   ++LVSWNSL++G 
Sbjct: 155 FIGDRLVSMYFKLGYDED-------------------AQRLFDEMPNKDLVSWNSLMSGL 195

Query: 156 VRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
              G+    +  F  M+ E   +P+EVT++ +VSACA +  L+ G+ +H  + + G++  
Sbjct: 196 SGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGK 255

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             + N+L++MY                                K GFLD A ++F+++P 
Sbjct: 256 AKVVNSLINMY-------------------------------GKLGFLDAASQLFEEMPV 284

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           + +V WN+++  +     +++ + LF+ M+  GI PD  T V  L AC+  G       I
Sbjct: 285 RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 344

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
           H +I +  FN ++++ TAL+++YAK G +  +  +F E+ +R+ + +TA++ G A+H   
Sbjct: 345 HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACG 404

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +AI  F  M+  G+  D +TF  +LSAC H GLV+EG+KYF  MS ++R+ P+L HYSC
Sbjct: 405 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSC 464

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514
           MVDLLGRSG LE+A +LI+SMPM     VWGAL  ACR++GNV +G+  A +LL LDP D
Sbjct: 465 MVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSD 524

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPEL 574
              Y++L+N+Y  + +W +A KVR +M+ER + + PGCS IE    ++ F+V D+ HP  
Sbjct: 525 HRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRS 584

Query: 575 EQIYDCLVQLTR 586
           ++I+  L +L R
Sbjct: 585 DEIHTKLEELIR 596



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 188/394 (47%), Gaps = 49/394 (12%)

Query: 8   SHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           S GF   RL++   +      D   + LF+ + N +  SWN  + G    G +   ++ +
Sbjct: 152 SDGFIGDRLVS---MYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAF 208

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
            +M    G +P+  T   +   CA +G    G  + G V+KLG      V N++I+++  
Sbjct: 209 CRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGK 268

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
            G L  A  +F+E  VR+LVSWNS++     +G+  + + LF  M+   + PD+ TM+ +
Sbjct: 269 LGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVAL 328

Query: 187 VSACAQLEDLNLGRE---IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
           + AC    D  LGR+   IH YI   G    + +A AL+++Y K G+L ++E+IF+ + +
Sbjct: 329 LRACT---DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKD 385

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
           +  ++ T M+ GYA                                    +EA+ LF  M
Sbjct: 386 RDRIAWTAMLAGYAVHAC-------------------------------GREAIKLFDLM 414

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLG--TALVDMYAK 359
              G++ D VT  H LSACS  G +++G    ++ E   E + +   L   + +VD+  +
Sbjct: 415 VKEGVEVDHVTFTHLLSACSHSGLVEEG---KKYFEIMSEVYRVEPRLDHYSCMVDLLGR 471

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            G +  A ++   MP E +S  + A++G   ++G
Sbjct: 472 SGRLEDAYELIKSMPMEPSSGVWGALLGACRVYG 505



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 186/437 (42%), Gaps = 68/437 (15%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR-------DMQLERVEPDEVTMI---- 184
           VF++   R  V WNS+++  VR G      R F          Q +R   ++   I    
Sbjct: 54  VFNQQLTRLAVPWNSIVSP-VRCGTSISHNRSFAFRHTDLIPKQFKRFNTNKGCCIFREA 112

Query: 185 -----------GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
                       +V A +    ++    IH  + +S       + + L+ MY K G  E 
Sbjct: 113 SQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDED 172

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A+ +FD M NK +VS  +++ G +  G+L                   A +  + + +  
Sbjct: 173 AQRLFDEMPNKDLVSWNSLMSGLSGRGYL------------------GACLNAFCRMR-- 212

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
                       +G +P+ VT +  +SAC+ +GALD+G  +H  + K   +    +  +L
Sbjct: 213 ----------TESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSL 262

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           ++MY K G +  A Q+F EMP R+ +++ +++     +G A   +  F+ M   G+ PD+
Sbjct: 263 INMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ 322

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQL 471
            T + +L AC   GL   GR+  +  + I R   +  +   + +++L  + G L  +E +
Sbjct: 323 ATMVALLRACTDTGL---GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 379

Query: 472 IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-----DSGIYVLLANMYR 526
              +    D + W A+     +H       R A+KL +L  +     D   +  L +   
Sbjct: 380 FEEIK-DRDRIAWTAMLAGYAVHA----CGREAIKLFDLMVKEGVEVDHVTFTHLLSACS 434

Query: 527 DSNMWEEAGKVRKMMEE 543
            S + EE  K  ++M E
Sbjct: 435 HSGLVEEGKKYFEIMSE 451



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 121/247 (48%), Gaps = 3/247 (1%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD  +++   +   +  SWN  +      G   + +DL+  M R  G  PD  T   L +
Sbjct: 272 LDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR-AGINPDQATMVALLR 330

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C   GL      I  ++ + GF+ D+ +  A+++++   G L  + ++F+E   R+ ++
Sbjct: 331 ACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA 390

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W +++ G+      REAI+LF  M  E VE D VT   ++SAC+    +  G++    +S
Sbjct: 391 WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMS 450

Query: 208 E-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK-FGFLDIA 265
           E   +   +   + ++D+  + G+LE A E+  SM  +        ++G  + +G +++ 
Sbjct: 451 EVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELG 510

Query: 266 RKIFDDL 272
           +++ + L
Sbjct: 511 KEVAEQL 517


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 288/524 (54%), Gaps = 5/524 (0%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM--YVH 117
           RE++    Q+L +     D   Y  L + C +         +  H+L L        ++ 
Sbjct: 41  RESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLA 100

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N +I ++  CG L  A  +F+    RN+ +W   +  F  +G   EA+  FR M      
Sbjct: 101 NLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGER 160

Query: 178 PDEVT--MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           PD VT  +I    A      ++ GREIH Y   SGL   V +  A++ MY KCG+L+ A 
Sbjct: 161 PDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDAR 220

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
             F+ +  K  V+   M+  Y   G    A ++F ++ +   V WNA+I  Y Q  R K+
Sbjct: 221 AAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQ 280

Query: 296 ALALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           AL L+  M   T + P   T V  +  C++L AL  G  IH  +   NF+ N+++  ALV
Sbjct: 281 ALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALV 340

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
            MY KCG + +AL VFH M  ++ +++  II   A HG +  A+  + EM   G+ P E+
Sbjct: 341 HMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEV 400

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           TF+G+LSAC HGGLV +G  YF +M    R+ P + H+ C++DLLGR G L EAE +++S
Sbjct: 401 TFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKS 460

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MP+ A+ V W +L  AC+ HG++  G RAA ++++  P  SG YVLL+N+Y  +  W++ 
Sbjct: 461 MPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDV 520

Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
            K+RK+M  RGV+K+PG S IE+  +++EF+  D SHP+ E+IY
Sbjct: 521 EKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIY 564



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 142/286 (49%), Gaps = 13/286 (4%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++   + + +S  WN  I  + + G+ ++A+DLY+ M       P   T+  +  VCA L
Sbjct: 252 ELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 311

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  I   V    FD ++ V NA++H++  CG L  A +VF    +++ +SWN++I
Sbjct: 312 SALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTII 371

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG-L 211
           + +   G   +A+ L+++M L+ V+P EVT +G++SAC+    +  G +  + + +   +
Sbjct: 372 SSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRI 431

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
             +VP    ++D+  + G+L  AE +  SM +    V   +++      G L    +  D
Sbjct: 432 KPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAAD 491

Query: 271 DLPEKYVVPWNAIIGGYV-------QAKRSKEALALFHEMQATGIK 309
            + ++  VPW +  GGYV        A R K+   +   M A G+K
Sbjct: 492 QVVDR--VPWTS--GGYVLLSNIYAAAGRWKDVEKIRKIMAARGVK 533


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 293/557 (52%), Gaps = 32/557 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D  + I   + + +  SWN  I G +  G    A++L  QM +  G  P+ FT   + K
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM-KYSGLVPNVFTLSSILK 311

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            C+  G   LG +I G ++K   D D Y+   ++ ++     L  A  VFD    R+L+ 
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
            N+LI+G    G   EA+ LF +++ E +  +  T+  ++ + A LE  +  R++H    
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G      + N L+D Y KC  L  A  +F+   +  +++CT+MI   +          
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALS---------- 481

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                Q    + A+ LF EM   G++PD       L+AC+ L A
Sbjct: 482 ---------------------QCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSA 520

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G  +H  + K  F  +   G ALV  YAKCG+I  A   F  +PER  ++++A+IGG
Sbjct: 521 YEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGG 580

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA HG    A+  F  M+  G+ P+ IT   +L AC H GLVDE ++YF  M  +F +  
Sbjct: 581 LAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 640

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HYSCM+DLLGR+G L++A +L+ SMP  A+  +WGAL  A R+H +  +G+ AA KL
Sbjct: 641 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKL 700

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             L+P+ SG +VLLAN Y  + MW E  KVRK+M++  ++K P  S IEV   ++ FIV 
Sbjct: 701 FILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVG 760

Query: 568 DKSHPELEQIYDCLVQL 584
           DKSHP  ++IY  LV+L
Sbjct: 761 DKSHPMTKEIYAKLVEL 777



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 188/394 (47%), Gaps = 37/394 (9%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C +  F+ + +P   SW+  +  +   G  R A+  +  M R  G   + F  P++ K  
Sbjct: 55  CARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAEGVCCNEFALPVVLKCV 113

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES-CVRNLVSW 148
               L   G ++    +  GF  D++V NA++ ++   G +  A  VF+E+   RN VSW
Sbjct: 114 PDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSW 170

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N L++ +V++    +AI++F +M    ++P E     +V+AC    ++  GR++H  +  
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR 230

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    V  ANAL+DMY+K G+++ A  IF+ M                           
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKM--------------------------- 263

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
               P+  VV WNA+I G V       A+ L  +M+ +G+ P+  T    L ACS  GA 
Sbjct: 264 ----PDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           D G  IH F+ K N + +  +G  LVDMYAK   +  A +VF  M  R+ +   A+I G 
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGC 379

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  G+  +A+S F E+   GL  +  T   +L +
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 215/462 (46%), Gaps = 37/462 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SWN  +  +++  +  +A+ ++ +M+ +G  +P  F +  +   C        G ++
Sbjct: 166 NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+++G+D D++  NA++ +++  G + +A  +F++    ++VSWN+LI+G V +G  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             AI L   M+   + P+  T+  ++ AC+     +LGR+IH ++ ++       +   L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY K   L+ A ++FD M ++ ++ C                               N
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILC-------------------------------N 373

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G     R  EAL+LF+E++  G+  +  T    L + + L A      +H    K 
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  +  +   L+D Y KC  ++ A +VF E    + +  T++I  L+       AI  F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM+  GL PD      +L+AC      ++G++  A +     +S      + +V    +
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAK 552

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            G +E+AE    S+P    VV W A+      HG+   G+RA
Sbjct: 553 CGSIEDAELAFSSLPERG-VVSWSAMIGGLAQHGH---GKRA 590



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 193/427 (45%), Gaps = 45/427 (10%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N +I  +  C     A   FDE      VSW+SL+  +  +G PR AI+ F  M+ E V 
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
            +E  +  +V  C  + D  LG ++H     +G    V +ANAL+ MY            
Sbjct: 101 CNEFAL-PVVLKC--VPDARLGAQVHAMAMATGFGSDVFVANALVAMY------------ 145

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL-PEKYVVPWNAIIGGYVQAKRSKEA 296
                                FGF+D AR++F++   E+  V WN ++  YV+  +  +A
Sbjct: 146 -------------------GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDA 186

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           + +F EM  +GI+P        ++AC+    ++ G  +H  + +  ++ +V    ALVDM
Sbjct: 187 IQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDM 246

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y K G +  A  +F +MP+ + +++ A+I G  L+G    AI    +M   GL+P+  T 
Sbjct: 247 YMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRS 474
             IL AC   G  D GR+    M    + +     Y    +VD+  ++  L++A ++   
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDW 363

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-YVLLANMYRDSNMWEE 533
           M    D+++  AL   C  HG     + A     EL  +  G+    LA + + +   E 
Sbjct: 364 M-FHRDLILCNALISGCS-HGGRH--DEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 534 AGKVRKM 540
           A   R++
Sbjct: 420 ASTTRQV 426



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 50/325 (15%)

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           A  + L  G  +H  + +SG   +    N L+  Y KC +   A   FD           
Sbjct: 15  AAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFFD----------- 61

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
                               ++P+   V W++++  Y      + A+  FH M+A G+  
Sbjct: 62  --------------------EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCC 101

Query: 311 D--AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
           +  A+  V      ++LGA      +H       F  +V +  ALV MY   G +  A +
Sbjct: 102 NEFALPVVLKCVPDARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 369 VFHEM-PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           VF+E   ERN++++  ++     + +  DAI  F EM+  G+ P E  F  +++AC    
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYS--CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            ++ GR+  A    + R+      ++   +VD+  + G ++ A  +   MP  +DVV W 
Sbjct: 217 NIEAGRQVHAM---VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWN 272

Query: 486 ALFFACRLHGNVSIGERAAMKLLEL 510
           AL   C L+G+     RA   LL++
Sbjct: 273 ALISGCVLNGH---DHRAIELLLQM 294


>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
          Length = 594

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 201/577 (34%), Positives = 308/577 (53%), Gaps = 18/577 (3%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNV---------QNPNSFSWNVAIR 51
           +  TG I +    +R++   A S  ++L    + +F           +  + F WN  ++
Sbjct: 16  LITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYGETEDPFLWNAVMK 75

Query: 52  GFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD 111
                   R A+ L+  ML NG    D F+  L+ K C+ LG    G +I G + K G  
Sbjct: 76  SHSHGTDPRRALLLFCLMLENG-VSVDKFSSSLVLKACSRLGFVKGGMQIHGFLRKTGLW 134

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
            D+++ N +I +++ CG LG A  +FD    R+ VS+N    G V+ G    A  LF   
Sbjct: 135 SDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXVKCGLIESARELFXLX 194

Query: 172 QLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
             E    +  +   M S  AQ  D L +  ++   + E  L       N+++D YVK G+
Sbjct: 195 XXE--XKNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISW----NSIIDGYVKHGR 248

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
            E A++++D M  + V++  TMI GY K GF+  A+ + D +P + VV +N+++ GYVQ 
Sbjct: 249 XEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQN 308

Query: 291 KRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
           K   EAL LF +M+  + + PD  T V  LSA +QLG L   + ++ ++ K+ F L   L
Sbjct: 309 KYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQFFLGGKL 368

Query: 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
             +L+DMY+KCG+I  A+ VF  +  +    + AIIGGLA+HG+   A +   ++    +
Sbjct: 369 WVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSI 428

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
            PD+ITF G+L+AC H G V EG   F  M    ++ P+L+HY CMVD+L RSG +E A+
Sbjct: 429 KPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAK 488

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529
            LI  MP+  + V+W     AC  H    +GE  A  L+     +   YVLL+NMY    
Sbjct: 489 NLIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQADYNPSSYVLLSNMYASFG 548

Query: 530 MWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           MW++   VR MM+ER + K PGCSSIE++G ++EF V
Sbjct: 549 MWKDVRGVRTMMKERKIPKIPGCSSIELDGRVHEFFV 585


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/452 (38%), Positives = 269/452 (59%), Gaps = 6/452 (1%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +F +    N   +++LI  + R+G    +IRL+  M    V P   T   + S    L++
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKN 124

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            +LG ++H +    G    + + N ++ MYVK G L+ A ++FD M ++ VV+ T +IV 
Sbjct: 125 PSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVA 184

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           YA+ G +D A ++F  LP K +V W +++ GY Q    K+AL  F +M+  G+  D +T 
Sbjct: 185 YARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITL 244

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNL--NVVLGTALVDMYAKCGNIAKALQVFHEM 373
           V  +SAC+QLG      WI    E   F    NV +G+AL+DMY+KCGN+ +A  VF  M
Sbjct: 245 VGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            E N  +Y+++I G A+HG+A  AI  F EM+  G+ P+ +TF+G+ +AC H G+V++G+
Sbjct: 305 KEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQ 364

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           + F  M   + +SP   HY+CM DLLGR+G LE+A QL+++MPM  +  VWGAL  A  +
Sbjct: 365 QLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHI 424

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           HGN  + E A+  L EL+P + G Y+LL+  Y  +  W++  +VRK+M E+ + K PGCS
Sbjct: 425 HGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCS 484

Query: 554 SIEV-NGLLYEFIVRDKSHPELEQIYDCLVQL 584
            +E  NG+++EF   D  HPE+ +I   L  L
Sbjct: 485 WVEAKNGIIHEFFAGDVKHPEINEIKKALDDL 516



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 189/398 (47%), Gaps = 75/398 (18%)

Query: 34  ILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +LF+ V +PN F ++  IR +   G    ++ LY  ML N    P +FT+  LF +  + 
Sbjct: 67  LLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSML-NNNVSPVSFTFSALFSLLKNP 125

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE------------- 139
            L   G ++  H    GF  D+YV N +IH++V  G L  A  VFDE             
Sbjct: 126 SL---GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELI 182

Query: 140 -----------SC-------VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
                      +C       V+++V+W S++ G+ ++  P++A++ FR M+   V  DE+
Sbjct: 183 VAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEI 242

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISES---GLTLTVPLANALMDMYVKCGKLESAEEIF 238
           T++G +SACAQL        I   I+ES   G    V + +AL+DMY KCG +E A  +F
Sbjct: 243 TLVGAISACAQLGVSGYADWIR-EIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVF 301

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
             M    V S ++MIVG+A  G                               R++ A+ 
Sbjct: 302 KGMKEMNVFSYSSMIVGFAVHG-------------------------------RARSAIK 330

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG--TALVDM 356
           LF+EM   GIKP+ VT V   +ACS  G ++ G  +   + KE + ++        + D+
Sbjct: 331 LFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAM-KECYGVSPTADHYACMADL 389

Query: 357 YAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGK 393
             + G++ KALQ+   MP E N   + A++G   +HG 
Sbjct: 390 LGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGN 427



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A + S ++D   ++   +   +  +W   + G+ +    ++A+  +++M R  G   D  
Sbjct: 184 AYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKM-REAGVVTDEI 242

Query: 81  TYPLLFKVCASLGLRFLGYEIF----GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           T       CA LG+   GY  +        + G   +++V +A+I ++  CG++  A NV
Sbjct: 243 TLVGAISACAQLGVS--GYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNV 300

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           F      N+ S++S+I GF   G  R AI+LF +M    ++P+ VT +G+ +AC+    +
Sbjct: 301 FKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMV 360

Query: 197 NLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             G+++   + E  G++ T      + D+  + G LE A ++  +M
Sbjct: 361 EQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTM 406


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 302/599 (50%), Gaps = 62/599 (10%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           +R     A++ S+ +    ++  ++   ++ S+N  I GF  TG    +V LY+ +LR  
Sbjct: 81  TRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREE 140

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDMY--------- 115
             RP   T   +  V ++L  R LG+ +   VL+LGF          VDMY         
Sbjct: 141 SVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDA 200

Query: 116 -------------VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
                        ++N +I   + C  +  A  +F     R+ ++W +++ G  ++G   
Sbjct: 201 RRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQL 260

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+ +FR M+ E V  D+ T   +++AC  L  L  G++IH YI+ +     V + +AL+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALV 320

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY KC  +  AE +F  M  + ++S                               W A
Sbjct: 321 DMYSKCRSIRLAEAVFRRMTCRNIIS-------------------------------WTA 349

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GY Q   S+EA+  F EMQ  GIKPD  T    +S+C+ L +L++G   H       
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
               + +  ALV +Y KCG+I  A ++F EM   + +++TA++ G A  GKA + I  F 
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M+  GL PD +TF+G+LSAC   GLV++G  YF  M     + P   HY+CM+DL  RS
Sbjct: 470 KMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRS 529

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G  +EAE+ I+ MP + D   W  L  +CRL GN+ IG+ AA  LLE DPQ+   YVLL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +M+     W E   +R+ M +R V+K PGCS I+    ++ F   D+SHP   +IY+ L
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 200/407 (49%), Gaps = 38/407 (9%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNL----------------------------- 145
           ++ N ++  +   G L  A  VFDE    NL                             
Sbjct: 49  FLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPER 108

Query: 146 --VSWNSLINGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
             VS+N+LI GF  +G P  +++L+R  ++ E V P  +T+  M+   + L D  LG  +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  +   G      + + L+DMY K G +  A  +F  M  KTVV   T+I G  +   +
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           + A+ +F  + ++  + W  ++ G  Q     EAL +F  M+A G+  D  T    L+AC
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             L AL++G  IH +I +  +  NV +G+ALVDMY+KC +I  A  VF  M  RN +++T
Sbjct: 289 GALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY--FAQMS 440
           A+I G   +  + +A+  FSEM   G+ PD+ T   ++S+C +   ++EG ++   A +S
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + R    +   + +V L G+ G +E+A +L   M    D V W AL
Sbjct: 409 GLMRY---ITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTAL 451



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 37/326 (11%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+  Y K G+L  A  +FD M +  + +   ++   A    +    ++F  +PE+ 
Sbjct: 50  LLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERD 109

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHE-MQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            V +NA+I G+        ++ L+   ++   ++P  +T    +   S L     G  +H
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--------------------- 374
             + +  F     +G+ LVDMYAK G I  A +VF EM                      
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 375 ----------ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
                     +R+S+T+T ++ GL  +G  L+A+  F  M   G+  D+ TF  IL+AC 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
               ++EG++  A ++  +     +   S +VD+  +   +  AE + R M    +++ W
Sbjct: 290 ALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRM-TCRNIISW 347

Query: 485 GALFFACRLHGNVSIGERAAMKLLEL 510
            A+      +G  +  E A     E+
Sbjct: 348 TAMIVG---YGQNACSEEAVRAFSEM 370


>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Brachypodium distachyon]
          Length = 601

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 286/502 (56%), Gaps = 14/502 (2%)

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           V LYK ML +  + PD  T+  L K   S+G   +G ++  HVL  G    +Y+ N++I 
Sbjct: 105 VALYKSMLASSAS-PDEKTFLSLLK---SVGCASVGKQVHAHVLVNGLHSRVYLRNSLIK 160

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           +++  GD   A  +F    V ++VS N +++G+V+ G    A++LFRDM    +  D+  
Sbjct: 161 MYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQYA 220

Query: 183 MIGMVSACAQLEDLNLGREIHWY------ISESGLTLTVPLANALMDMYVKCGKLESAEE 236
            + ++S C +L++  LGR +H        I + GL L+    NAL+DMY KCG++ +A  
Sbjct: 221 AVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILS----NALLDMYAKCGEMNTAMR 276

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           +F     K  +S  TMI G+A  G LD+A K F D P + ++ WN ++ GY + +     
Sbjct: 277 VFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAV 336

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
           + LF++M ++ ++PD VT V  +SA    GAL+ G  +H ++ KE+   +  L + LVDM
Sbjct: 337 MELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLASTLVDM 396

Query: 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           Y KCGN+  A  VF +  +++   +TA+I GLA HG   +A+  F  M   G+ P+ +T 
Sbjct: 397 YCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNGVTL 456

Query: 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476
           + +LSAC H GL+DEG + F  M   F + P+++H+ CMVDLL RSG L +A  L R MP
Sbjct: 457 VTVLSACSHAGLLDEGCEIFYTMQKRFNIEPRVEHFGCMVDLLARSGRLSDAVGLARMMP 516

Query: 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536
           M     +WG++        N  + E A+ +LL L+P + G YVLL+N+Y     W  + K
Sbjct: 517 MKPSRSIWGSILSVSSSCQNTEVAEIASKELLRLEPTEEGGYVLLSNLYAAGGQWNYSNK 576

Query: 537 VRKMMEERGVEKTPGCSSIEVN 558
           VR+ ME RGV K+ G S + V+
Sbjct: 577 VRENMEMRGVRKSAGASGLAVD 598


>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
          Length = 499

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 238/382 (62%), Gaps = 1/382 (0%)

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD-SMVNKTVVSCTTMIVGYAKF 259
           ++H  +  +G       + +L+  Y  CG + SA  +FD +     VVS   MI GY K 
Sbjct: 92  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G L  AR++FD +P + VV W  +IG Y Q K+ +EA+ +F  MQ  GI+PD V  +  L
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC  LG +D G W+HRF+ +      + L  A++DMY KCG++ KAL+VF  M +++ +
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 271

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           T+T +I G ALHG   +A+  F  M    + P++ITFL +LS C H GL D GR YF  M
Sbjct: 272 TWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTM 331

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
            S +++ P+++HY CM+DLLGR+G L EA  LI+ MP  A+  +WGAL  A R HG+  +
Sbjct: 332 VSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTEL 391

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
           GE+A + L+EL+P +SG Y+LL+N+Y +   W+   ++R  M +RG+   PG SSI+V+G
Sbjct: 392 GEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDG 451

Query: 560 LLYEFIVRDKSHPELEQIYDCL 581
           +++EF  RD SHP L +I + L
Sbjct: 452 MVHEFTSRDGSHPSLHKIREVL 473



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 33/282 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D+   N +I  +V  GDL  A  +FD    RN+VSW  +I  + +   P EAI +FR MQ
Sbjct: 137 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 196

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +E +EPD V ++ ++SAC  L  ++LG  +H ++   GL   +PL NA++DMYVKCG ++
Sbjct: 197 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVK 256

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A E+F+ M  K++V+ TTMI G+A  G                                
Sbjct: 257 KALEVFEGMEQKSIVTWTTMIAGFALHGL------------------------------- 285

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR-FIEKENFNLNVVLGT 351
             EA+ LF  M+   + P+ +T +  LS CS +G  D G W  +  + +      V    
Sbjct: 286 GSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYG 345

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            ++D+  + G + +A  +  +MP + N+  + A++     HG
Sbjct: 346 CMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHG 387



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 35  LFNVQ-NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LF+V    N  SW + I  + +  +  EA++++++M +  G  PD      +   C  LG
Sbjct: 160 LFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRM-QVEGIEPDGVALLSVLSACGDLG 218

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
           +  LG  +   VL+ G   ++ + NA+I ++V CG +  A  VF+    +++V+W ++I 
Sbjct: 219 VVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIA 278

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY----ISES 209
           GF   G   EA+ LFR M+ E V P+++T + ++S C+ +   +LGR   WY    +S+ 
Sbjct: 279 GFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGR---WYFKTMVSQY 335

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
            +   V     ++D+  + G L  A  +   M  K   +    ++  A+
Sbjct: 336 KIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAAR 384


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 310/572 (54%), Gaps = 37/572 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           +   I GF+       A+ ++++ML +   RP+  T   + K C   G   L   I G  
Sbjct: 214 FTATISGFVRNELHHNALGVFRKML-SCRVRPNGITIVCMIKACVGAGEFGLALSIVGLA 272

Query: 106 LKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG----- 159
           +K  F +  + V N++I +++  GD   A  VFDE  V+++VSW +L++ +  SG     
Sbjct: 273 IKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGA 332

Query: 160 ------FPR--------------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
                  P                     EA++L+  M  +   P+      ++SACA L
Sbjct: 333 RRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASL 392

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           EDL  G  IH    + G +  V ++ +L+DMY KC K   A+ IFD++  K +V   +++
Sbjct: 393 EDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLV 452

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY+  G +  A  +F  +P + +  WN II GY Q ++  +AL  F+ M A+G  P  +
Sbjct: 453 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEI 512

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    L AC+ L +L  G   H    K     ++ +GTAL DMYAK G++  + ++F++M
Sbjct: 513 TFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQM 572

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           PERN +T+TA+I GLA +G A ++I  F +M+  G+ P+E TFL +L AC HGGLV++  
Sbjct: 573 PERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAI 632

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
            YF +M ++  +SPK KHY+CMVD+L R+G L EAE L+   P  ++   W AL  AC  
Sbjct: 633 HYFDKMQAL-GISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNT 691

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           + N  I ERAA +L EL   ++  YVLL+NMY     W++A ++R +M+   ++K  GCS
Sbjct: 692 YRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCS 751

Query: 554 SIEVNGLLYEFIVRDKSHP---ELEQIYDCLV 582
            ++V G  + F   +  HP   E+++I D L+
Sbjct: 752 WVQVRGQYHAFFSWEAKHPLSMEIDEILDLLM 783



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 198/409 (48%), Gaps = 34/409 (8%)

Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
           D  +  +  ++   +  G +  A  ++++    ++  + + I+GFVR+     A+ +FR 
Sbjct: 177 DRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRK 236

Query: 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDMYVKCG 229
           M   RV P+ +T++ M+ AC    +  L   I    I  +    ++ + N+L+ +Y++ G
Sbjct: 237 MLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMG 296

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
              +A ++FD M  K VVS T ++  Y++ G LD AR++ D +PE+  V W  +I  + Q
Sbjct: 297 DAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQ 356

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
              + EA+ L+ +M A G +P+       LSAC+ L  L  G  IH    K   + NV +
Sbjct: 357 RGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFV 416

Query: 350 GTALVDMYAKC-------------------------------GNIAKALQVFHEMPERNS 378
             +L+DMY KC                               G + +A+ +F +MP RN 
Sbjct: 417 SCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNL 476

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
            ++  II G A + + +DA+  F+ M+  G +P EITF  +L AC +   +  G+   A+
Sbjct: 477 ASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAK 536

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
              +  +   +   + + D+  +SG L+ ++++   MP   D V W A+
Sbjct: 537 TIKL-GIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERND-VTWTAM 583



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 172/388 (44%), Gaps = 67/388 (17%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           SES +LD   ++L  +   N  SW   I    + G   EAV LY QML + G RP+   +
Sbjct: 324 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLAD-GCRPNISCF 382

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CASL     G  I    LK+G   +++V  ++I ++  C   G A  +FD    
Sbjct: 383 SSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQ 442

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE------------------------- 177
           +N+V WNSL++G+  +G   EA+ LF+ M    +                          
Sbjct: 443 KNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAM 502

Query: 178 ------PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
                 P E+T   ++ ACA L  L  G+  H    + G+  ++ +  AL DMY K G L
Sbjct: 503 LASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDL 562

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
           +S++ +F  M  +  V+ T MI G A+ GF                              
Sbjct: 563 QSSKRMFYQMPERNDVTWTAMIQGLAENGF------------------------------ 592

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG- 350
            ++E++ LF +M ATG+ P+  T +  L ACS  G ++    IH F + +   ++     
Sbjct: 593 -AEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQA--IHYFDKMQALGISPKEKH 649

Query: 351 -TALVDMYAKCGNIAKALQVFHEMPERN 377
            T +VD+ A+ G +A+A  +  + P ++
Sbjct: 650 YTCMVDVLARAGRLAEAEALLMKTPSKS 677



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 36/300 (12%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           ++  +VK G + SA  +FD M ++TVVS TTM+    K G +  A ++++  P   V  +
Sbjct: 155 MVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 214

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A I G+V+ +    AL +F +M +  ++P+ +T V  + AC   G     + I     K
Sbjct: 215 TATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIK 274

Query: 341 ENF--------------------------------NLNVVLGTALVDMYAKCGNIAKALQ 368
            NF                                  +VV  TAL+D+Y++ G++  A +
Sbjct: 275 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 334

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           V   MPERN +++  +I      G A +A+  +S+M+  G  P+   F  +LSAC     
Sbjct: 335 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLED 394

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSC-MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +  G +  A+  S+   S      SC ++D+  +     +A+ +  ++P   ++V W +L
Sbjct: 395 LRGGARIHAR--SLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQ-KNIVCWNSL 451


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 311/587 (52%), Gaps = 74/587 (12%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  +  +++ G    A+ ++++M  + G RPD  +   +   CAS+G    G ++ G+
Sbjct: 197 SWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGY 256

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF--------- 155
            L+ G   D++V NAV+ ++  CG +  A  VF+   V+++VSWN+++ G+         
Sbjct: 257 ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDA 316

Query: 156 --------------------------VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
                                      + G   EA+ +FR M+L   EP+ VT++ ++S 
Sbjct: 317 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSG 376

Query: 190 CAQLEDLNLGREIH-----WYIS--ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           CA    L  G+E H     W ++  E+     + + NAL+DMY KC   ++A  +FD + 
Sbjct: 377 CALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 436

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K                             ++ VV W  +IGG  Q   + EAL LF +
Sbjct: 437 PK-----------------------------DRSVVTWTVLIGGNAQHGEANEALELFSQ 467

Query: 303 MQATG--IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAK 359
           M      + P+A T    L AC++LGAL  G  IH ++ +  F   ++ +   L+DMY+K
Sbjct: 468 MLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 527

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
            G++  A  VF  M +RN +++T+++ G  +HG+  +A+  F EM  VGL+PD +TF+ +
Sbjct: 528 SGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVV 587

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H G+VD+G  YF  M+  F + P  +HY+CMVDLL R+G L+EA +LIR MPM  
Sbjct: 588 LYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKP 647

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VW AL  ACR++ NV +GE AA +LLEL+  + G Y LL+N+Y ++  W++  ++R 
Sbjct: 648 TPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRY 707

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +M+  G++K PGCS ++       F   D SHP  +QIYD L  L +
Sbjct: 708 LMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQ 754



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 258/486 (53%), Gaps = 24/486 (4%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F WN  IR  +  G + + + LY++M R G  RPD++T+P + K C  +     G  +  
Sbjct: 92  FWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD---ESCVRNLVSWNSLINGFVRSGF 160
            V   GF+ +++V N ++ ++  CG    A  VFD   E  V +LVSWNS++  +++ G 
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              A+++F  M  +  + PD V+++ ++ ACA +   + G+++H Y   SGL   V + N
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 270

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--- 276
           A++DMY KCG +E A ++F+ M  K VVS   M+ GY++ G  D A  +F+ + E+    
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 330

Query: 277 -VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            VV W+A+I GY Q     EAL +F +M+  G +P+ VT V  LS C+  G L  G   H
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 336 RFIEKENFNL-------NVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIG 386
               K   NL       ++++  AL+DMY+KC +   A  +F  +P  +R+ +T+T +IG
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450

Query: 387 GLALHGKALDAISYFSEMIGVG--LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           G A HG+A +A+  FS+M+     +MP+  T    L AC   G +  GR+  A +     
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
            S  L   +C++D+  +SG ++ A  +  +M    + V W +L     +HG    GE A 
Sbjct: 511 ESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMHGR---GEEAL 566

Query: 505 MKLLEL 510
               E+
Sbjct: 567 QIFYEM 572



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 167/349 (47%), Gaps = 51/349 (14%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  +W+  I G+ + G   EA+D+++QM R  G+ P+  T   L   CA  G    G E 
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQM-RLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 102 FGHVLKLGFDV-------DMYVHNAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLI 152
             H +K   ++       D+ V NA+I ++  C     A  +FD      R++V+W  LI
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 153 NGFVRSGFPREAIRLFRDM-QLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
            G  + G   EA+ LF  M Q +  V P+  T+   + ACA+L  L  GR+IH Y+  + 
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 211 L-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +  + +AN L+DMY K G +++A  +FD+M  +  VS T+++ GY   G         
Sbjct: 510 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG--------- 560

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                 R +EAL +F+EMQ  G+ PD VT V  L ACS  G +D
Sbjct: 561 ----------------------RGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVD 598

Query: 330 DGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKALQVFHEMP 374
            GI    +    N +  VV G      +VD+ ++ G + +A+++   MP
Sbjct: 599 QGI---NYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 644


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/464 (39%), Positives = 279/464 (60%), Gaps = 4/464 (0%)

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR-EAIRLFRDMQLER-VEPDEVT 182
           V+   L  A  +FD+    +L  +N++I     S     ++I +FR +  +    P+  +
Sbjct: 221 VALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYS 280

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
            +    AC     +  G ++  +  + GL   V + NAL+ M+ K G++E A  +FDS V
Sbjct: 281 FVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAV 340

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
           ++   S  TMI  Y   G + +A+++FD++ E+ VV W+ II GYVQ     EAL  FH+
Sbjct: 341 DRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHK 400

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M  + +KP+  T V  L+ACS L ALD G WIH +I ++N  +N  L  +L+DMYAKCG 
Sbjct: 401 MLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGE 460

Query: 363 IAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           I  A  VFHE   +R    + A+IGG A+HGK  +AI+ F +M    + P+++TF+ +L+
Sbjct: 461 IDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC HG +V EG+ YF  M+S + ++P+++HY CMVDLL RSG L+++E++I SMPMA DV
Sbjct: 521 ACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDV 580

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
            +WGAL  ACR++ ++  G R    + E+DP   G  VLL N+Y  S  W EA  VR+  
Sbjct: 581 AIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKN 640

Query: 542 E-ERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E     +K PG SSIE+NG+ +EF+V D+SHP+  +IY  L ++
Sbjct: 641 EINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEM 684



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 191/411 (46%), Gaps = 72/411 (17%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGF-LETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           +L Y  K+   +  P+ F +N  I+   +      +++ +++ ++R+ G  P+ +++   
Sbjct: 225 SLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFA 284

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF--------------------- 124
           F  C +      G ++F H +K+G D +++V NA+I +F                     
Sbjct: 285 FGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDF 344

Query: 125 ----------VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
                     V  G++ LA  +FDE   R++VSW+++I G+V+ G   EA+  F  M   
Sbjct: 345 YSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQS 404

Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            V+P+E TM+  ++AC+ L  L+ G+ IH YI    + +   L  +L+DMY KCG+++SA
Sbjct: 405 EVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSA 464

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
             +F                         + RK++         PWNA+IGG+    + +
Sbjct: 465 SSVFHEH---------------------KVKRKVW---------PWNAMIGGFAMHGKPE 494

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTAL 353
           EA+ +F +M+   + P+ VT +  L+ACS    + +G      +  +   N  +     +
Sbjct: 495 EAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCM 554

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           VD+ ++ G++  + ++   MP         +   +A+ G  L+A   + +M
Sbjct: 555 VDLLSRSGHLKDSEEMILSMP---------MAPDVAIWGALLNACRIYKDM 596



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 127/256 (49%), Gaps = 12/256 (4%)

Query: 25  SKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPL 84
           S N+    ++   +   +  SW+  I G+++ G   EA+D + +ML++   +P+ +T   
Sbjct: 357 SGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQS-EVKPNEYTMVS 415

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV-R 143
               C++L     G  I  ++ +    ++  +  ++I ++  CG++  A +VF E  V R
Sbjct: 416 ALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKR 475

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-I 202
            +  WN++I GF   G P EAI +F  M++E+V P++VT I +++AC+    +  G+   
Sbjct: 476 KVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYF 535

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
               S+ G+   +     ++D+  + G L+ +EE+  SM          M    A +G L
Sbjct: 536 ELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSM---------PMAPDVAIWGAL 586

Query: 263 DIARKIFDDLPEKYVV 278
             A +I+ D+   Y +
Sbjct: 587 LNACRIYKDMERGYRI 602


>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
          Length = 491

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/449 (38%), Positives = 270/449 (60%), Gaps = 4/449 (0%)

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED- 195
            ++S     VSW S I    R+G   EA + F DM+L  VEP+ +T I ++S C      
Sbjct: 19  LNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSG 78

Query: 196 -LNLGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
              L   +H Y  + GL  T V +  A++ MY K G ++ A  +FD M +   V+  TMI
Sbjct: 79  SETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMI 138

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
            GY + G +D A K+FD +PE+ ++ W A+I G+V+    +EAL  F EMQ +G++PD V
Sbjct: 139 DGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYV 198

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
             +  L+AC+ LGAL  G+W+HR++  ++F  NV +  +L+D+Y +CG +  A +VF +M
Sbjct: 199 AIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 258

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
            +R  +++ ++I G A +G A +++ YF +M   G  PD +TF G L+AC H GLV+EG 
Sbjct: 259 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL 318

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M   + +SP+++HY C+VDL  R+G LE+A ++I SMPM  + VV G+L  ACR 
Sbjct: 319 RYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAACRT 378

Query: 494 HGNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           HGN ++  ER    L +L+ +    YV+L+NMY     WE A ++R+ M+  G++K PG 
Sbjct: 379 HGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGF 438

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SSIE++   + F+  D +H E   I + L
Sbjct: 439 SSIEIDDCTHVFMAGDSAHVETAIIREVL 467



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 178/386 (46%), Gaps = 68/386 (17%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL--GLRFLGYE 100
           + SW   I      G++ EA   +  M R  G  P++ T+  L   C     G   L   
Sbjct: 27  TVSWTSRITLLTRNGRLAEAAKXFSDM-RLSGVEPNHITFIALLSGCGDFPSGSETLSNL 85

Query: 101 IFGHVLKLGFD----------VDMYVH----------------------NAVIHVFVSCG 128
           + G+  KLG D          + MY                        N +I  ++  G
Sbjct: 86  LHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSG 145

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
            +  A  +FD+   R+L+SW ++INGFV+ GF  EA+  FR+MQ+  V PD V +I  ++
Sbjct: 146 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALN 205

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           AC  L  L+ G  +H Y+        V ++N+L+D+Y +CG +E A E+FD M  +TVVS
Sbjct: 206 ACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVS 265

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
             ++IVG+A  G                                + E+L  F +MQ  G 
Sbjct: 266 WNSVIVGFAANG-------------------------------NAHESLVYFRKMQEEGF 294

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKAL 367
           KPDAVT    L+ACS +G +++G+   + ++++   +  +     LVD+Y++ G +  AL
Sbjct: 295 KPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDAL 354

Query: 368 QVFHEMPER-NSLTYTAIIGGLALHG 392
           +V   MP + N +   +++     HG
Sbjct: 355 KVIESMPMKPNEVVIGSLLAACRTHG 380



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
            S  +D   K+   +   +  SW   I GF++ G   EA+  +++M +  G RPD     
Sbjct: 143 RSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREM-QISGVRPDYVAII 201

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                C +LG    G  +  +V+   F  ++ V N++I ++  CG +  A  VFD+   R
Sbjct: 202 AALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKR 261

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REI 202
            +VSWNS+I GF  +G   E++  FR MQ E  +PD VT  G ++AC+ +  +  G R  
Sbjct: 262 TVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYF 321

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                + G++  +     L+D+Y + G+LE A ++ +SM
Sbjct: 322 QTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESM 360


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 303/567 (53%), Gaps = 25/567 (4%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-SL 92
           I  N    N   WN+ I  ++  G   EA+  Y++M+  G  RPDNFTYP + K C   L
Sbjct: 98  ITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKG-VRPDNFTYPSVLKACGEKL 156

Query: 93  GLRFLGYEIFGHV-LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
            L F G E+   +    G   ++YVHN+++ ++   G+L  A  +F++   R+ VSWN +
Sbjct: 157 DLDF-GREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGI 215

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I+ +   G  +EA  LF +M+L   E + +T   +   C Q  +     E+   +    +
Sbjct: 216 ISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDI 275

Query: 212 TLTVPLANAL------------MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            L  P+A  +            +   +    + S  + FD++ N        +I  Y++ 
Sbjct: 276 DLD-PVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRN-------ALITMYSRC 327

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
             L  A  +F  +  K +  WN+++ GY    RS+EA  LF EM  +GI+P+ VT    L
Sbjct: 328 KDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASIL 387

Query: 320 SACSQLGALDDGIWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
             C+++  L  G   H +I  +E F   ++L  +LV+MYA+ G +  A +VF  +  R+ 
Sbjct: 388 PHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDK 447

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           +TYT++I G  + G+   A+  F EMI   + PD++T + +LSAC H GLV EG   F +
Sbjct: 448 VTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEK 507

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           MS+++ + P ++H+SCMVDL GR+GLL +A+++I SMP      +W  L  ACR+HGN  
Sbjct: 508 MSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNTE 567

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           IGE AA KLLE+ P++ G YVL+ANM+  +  W +  +VR  M + GV K PGC+ ++V 
Sbjct: 568 IGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAPGCTWVDVG 627

Query: 559 GLLYEFIVRDKSHPELEQIYDCLVQLT 585
                F+V D S      +Y+ L  LT
Sbjct: 628 SGFSPFVVGDTSKHNSNDLYELLEGLT 654



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 211/430 (49%), Gaps = 10/430 (2%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L   C +L     G ++  H + LGF+  + +   ++  + S   L  A  +   S + N
Sbjct: 47  LLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVN 106

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
            + WN LI+ +V +G   EA+  +R+M  + V PD  T   ++ AC +  DL+ GRE+H 
Sbjct: 107 PLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHE 166

Query: 205 YISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            I+ + G    + + N+L+ MY K G+L++A  +F+ M  +  VS   +I  YA  G   
Sbjct: 167 SINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWK 226

Query: 264 IARKIFDDL----PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
            A ++F+++     E  ++ WN I GG VQ +  K AL L  +M+   I  D V  +  L
Sbjct: 227 EAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGL 286

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
            ACS +GA+  G  IH    +  F+    +  AL+ MY++C ++  A  +F  +  ++  
Sbjct: 287 GACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLT 346

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           T+ +++ G     ++ +A   F EM+  G+ P+ +T   IL  C     + +G+++   +
Sbjct: 347 TWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYI 406

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
                    L  ++ +V++  RSG +  A+++  S+    D V + +L     + G    
Sbjct: 407 MRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSL-RRRDKVTYTSLIAGYGIQGE--- 462

Query: 500 GERAAMKLLE 509
             + A+KL +
Sbjct: 463 -GKTALKLFD 471



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 177/407 (43%), Gaps = 74/407 (18%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM--------------LRNG 73
           LD   ++   +   ++ SWN  I  +   G  +EA +L+++M              +  G
Sbjct: 194 LDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGG 253

Query: 74  GTRPDNFTYPLL--------------------FKVCASLGLRFLGYEIFGHVLKLGFDVD 113
             +  NF   L                        C+ +G   LG  I    ++  FD  
Sbjct: 254 CVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGF 313

Query: 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
             V NA+I ++  C DL  A  +F     ++L +WNS+++G+       EA  LFR+M  
Sbjct: 314 DNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLF 373

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI-SESGLTLTVPLANALMDMYVKCGKLE 232
             +EP+ VT+  ++  CA++ +L  G+E H YI    G    + L N+L++MY + GK+ 
Sbjct: 374 SGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVL 433

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           SA+ +FDS+  +  V+ T++I GY   G                                
Sbjct: 434 SAKRVFDSLRRRDKVTYTSLIAGYGIQG-------------------------------E 462

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG-- 350
            K AL LF EM    IKPD VT V  LSACS  G + +G   +   EK +    +V    
Sbjct: 463 GKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEG---NVLFEKMSTLYGIVPAVE 519

Query: 351 --TALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHGKA 394
             + +VD++ + G + KA +V   MP R  +  +  ++G   +HG  
Sbjct: 520 HFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNT 566



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 133/272 (48%), Gaps = 8/272 (2%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           GF   R       S  K+L +   +  +++  +  +WN  + G+    +  EA  L+++M
Sbjct: 312 GFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREM 371

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL-GFDVDMYVHNAVIHVFVSCG 128
           L + G  P+  T   +   CA +     G E   ++++  GF+  + + N+++ ++   G
Sbjct: 372 LFS-GIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSG 430

Query: 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
            +  A  VFD    R+ V++ SLI G+   G  + A++LF +M   R++PD+VTM+ ++S
Sbjct: 431 KVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLS 490

Query: 189 ACAQLEDLNLGREIHWYISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
           AC+    +  G  +   +S   G+   V   + ++D++ + G L  A+++  SM  +   
Sbjct: 491 ACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTT 550

Query: 248 SCTTMIVGYAKF-GFLDI----ARKIFDDLPE 274
           +    +VG  +  G  +I    A K+ +  PE
Sbjct: 551 AMWATLVGACRIHGNTEIGEWAAEKLLEMKPE 582



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 7/190 (3%)

Query: 302 EMQATGIKPDAVTTVHCLSA----CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
           ++ A+    DA+  +H +S+    C+ L +L  G  +H       F  ++VL   LV  Y
Sbjct: 29  KLHASSANRDAI--LHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFY 86

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           +    +A A  +       N L +  +I     +G   +A+S + EM+  G+ PD  T+ 
Sbjct: 87  SSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYP 146

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +L AC     +D GR+    +++ +     L  ++ +V + G+ G L+ A +L   MP 
Sbjct: 147 SVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMP- 205

Query: 478 AADVVVWGAL 487
             D V W  +
Sbjct: 206 ERDAVSWNGI 215


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 284/497 (57%), Gaps = 8/497 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            + GHV++L      Y+   ++H+  +   +  A  VF +    NL   N++I  + ++ 
Sbjct: 32  RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91

Query: 160 FPREAIRLFRDMQLERVEP-------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             R+A+ ++  M      P       D  T   ++ AC     L LG+++H ++  SG  
Sbjct: 92  QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCD 151

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            +  + N+L++MY + G L  A ++FD M  + VVS   +I  +A+ G +  A  +F+ +
Sbjct: 152 SSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSM 211

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           P+K +V W A++ GY        A+  F  MQ  G +PD V+ V  L AC+QLGAL+ G 
Sbjct: 212 PDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGR 271

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           WI+ + ++     +  +  AL++MYAKCG I +ALQ+F  M +++ ++++ +IGGLA HG
Sbjct: 272 WIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHG 331

Query: 393 KALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           +A +A+  F+EM   G + P+ ITF+G+LSAC + GLVDEG  +F +M+ ++ + P ++H
Sbjct: 332 RAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH 391

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y C+VDLLGRSG +  A  L+R MP+ AD  VWG+L  ACR HG+V     AA +L+EL+
Sbjct: 392 YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELE 451

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P D G  V+LAN+Y  +  W +    RK +  R + KTPGCS IEV  ++ EF+  +   
Sbjct: 452 PDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAGEGLS 511

Query: 572 PELEQIYDCLVQLTRHF 588
            EL  +   L  L  H 
Sbjct: 512 SELGGLAGVLDILASHL 528



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 214/454 (47%), Gaps = 81/454 (17%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +  ++++  C  +  + + +  ++   V++PN    N  I+ + +  + R+AV +Y +ML
Sbjct: 47  YLATQIVHLC--NAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRML 104

Query: 71  RNGGTRPD------NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           R   + PD       FTYP L K C       LG ++  HV++ G D    V N++I ++
Sbjct: 105 RCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMY 164

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL----------------- 167
              GDL LA  VFDE   R++VSWN LI+   R G  R+A  L                 
Sbjct: 165 TRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVS 224

Query: 168 --------------FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
                         FR MQ E  EPD+V+++ ++ ACAQL  L LGR I+ Y    G+  
Sbjct: 225 GYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLT 284

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
           +  + NALM+MY KCG ++ A ++FD M +K V+S                         
Sbjct: 285 STHICNALMEMYAKCGCIDQALQLFDGMADKDVIS------------------------- 319

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI 332
                 W+ +IGG     R+ EA+ LF EM+  G ++P+ +T V  LSACS  G +D+G+
Sbjct: 320 ------WSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGL 373

Query: 333 WIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
                 ++ N    V  G      +VD+  + G I +AL +  +MP   ++  + +++  
Sbjct: 374 ---SHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSA 430

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
              HG    A+     +  V L PD++  L +L+
Sbjct: 431 CRSHGDVDTAVLAAERL--VELEPDDVGNLVMLA 462


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 152/355 (42%), Positives = 241/355 (67%)

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
           A+++F  + ++ +V  T MI GY++ G ++ AR IFD + EK +V W+A+I GY ++ + 
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
           +EAL LF EMQ  GIKPD VT +  +SAC++LG LD   WIH +++K      + +  AL
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           +DMYAKCGN+  A  VF +M  RN +++T++I   A+HG A +A+ +F +M    + P+ 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
           +TF+G+L AC H GLV+EGR+ FA M++   ++PK +HY CMVDL GR+ LL +A +L+ 
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
           +MP+A +VV+WG+L  AC++HG   +GE AA ++LEL+P   G  V L+N+Y     W++
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQD 301

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            G++R +M++RG+ K  GCS IE+N  +YEF++ DK H + ++IY+ L ++ +  
Sbjct: 302 VGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKEL 356



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 156/302 (51%), Gaps = 35/302 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++ V  A+I  +   G +  A  +FD+   ++LV W+++I+G+  S  P+EA+ LF +MQ
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
           +  ++PD+VT++ ++SACA+L  L+  + IH Y+ ++GL   +P+ NAL+DMY KCG L 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
           +A  +F+ M ++ V+S T+MI  +A  G                                
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHG-------------------------------D 161

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGT 351
           +  AL  F++M+   IKP+ VT V  L ACS  G +++G      +  E N         
Sbjct: 162 ASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYG 221

Query: 352 ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
            +VD++ +   +  AL++   MP   N + + +++    +HG+  + +  F+    + L 
Sbjct: 222 CMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGE--NELGEFAAKQVLELE 279

Query: 411 PD 412
           PD
Sbjct: 280 PD 281



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 2/209 (0%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           I   ++  +   W+  I G+ E+ K +EA++L+ +M +  G +PD  T   +   CA LG
Sbjct: 36  IFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM-QVFGIKPDQVTILSVISACARLG 94

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
           +      I  +V K G    + V+NA+I ++  CG+LG A  VF++   RN++SW S+IN
Sbjct: 95  VLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMIN 154

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS-ESGLT 212
            F   G    A++ F  M+ E ++P+ VT +G++ AC+    +  GR     ++ E  +T
Sbjct: 155 AFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNIT 214

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSM 241
                   ++D++ +   L  A E+ ++M
Sbjct: 215 PKHEHYGCMVDLFGRANLLRDALELVETM 243


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 298/557 (53%), Gaps = 48/557 (8%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++  N+   NS SWN  +  ++  G++ EA                     LLF+
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEAC--------------------LLFE 197

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             +                    D D+   N ++  FV    LG A  +FD+  VR+ +S
Sbjct: 198 SKS--------------------DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G+ + G   +A RLF     E    D  T   MVS   Q   L+   E   +  
Sbjct: 238 WNTMISGYAQGGGLSQARRLFD----ESPTRDVFTWTAMVSGYVQNGMLD---EAKTFFD 290

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           E      V   NA++  YV+  K++ A E+F+SM  + + S  TMI GY + G +  ARK
Sbjct: 291 EMPEKNEVSY-NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
            FD +P++  V W AII GY Q+   +EAL +F E++  G   +  T    LS C+ + A
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  IH    K  +     +G AL+ MY KCG+I +A   F  + E++ +++  ++ G
Sbjct: 410 LELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAG 469

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
            A HG    A++ F  M   G+ PDEIT +G+LSAC H GL+D G +YF  M+  + + P
Sbjct: 470 YARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIP 529

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             KHY+CM+DLLGR+G LEEA+ LIR+MP       WGAL  A R+HGN  +GE+AA  +
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMV 589

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
            +++PQ+SG+YVLL+N+Y  S  W +A K+R  M + GV+K PG S +EV   ++ F V 
Sbjct: 590 FKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVG 649

Query: 568 DKSHPELEQIYDCLVQL 584
           D SHPE E+IY  L +L
Sbjct: 650 DCSHPEKERIYAYLEEL 666



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/566 (24%), Positives = 257/566 (45%), Gaps = 91/566 (16%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   I G+ ++G   EA++++ + ++  G   +  T+      CA +    LG +I G 
Sbjct: 361 SWAAIIAGYAQSGHYEEALNMFVE-IKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K+G+    +V NA++ ++  CG +  A + F+    +++VSWN+++ G+ R GF R+A
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMD 223
           + +F  M+   V+PDE+TM+G++SAC+    L+ G E  + +++  G+  T      ++D
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-GFLDIARK----IFDDLPEK--- 275
           +  + G+LE A+++  +M  +   +    ++G ++  G  ++  K    +F   P+    
Sbjct: 540 LLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGM 599

Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP-------DAVTTVHCLSA--CSQLG 326
           YV+  N     Y  + R  +A  +  +M+  G++        +    +H  S   CS   
Sbjct: 600 YVLLSNL----YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH-- 653

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT--AI 384
              +   I+ ++E+ +  +      +L  +        +   +     E+ ++ +    I
Sbjct: 654 --PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 711

Query: 385 IGG--------LALHGKALDAISYFSEMIG-VGLMPDEITFLGILSACC----------- 424
            GG        L +      AI + S+++G + ++ D   F       C           
Sbjct: 712 PGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYWLQFFL 771

Query: 425 ----HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
               + GL+D G +YF  M+  + ++P  KHY+CM+DLLGR   LEE             
Sbjct: 772 LVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE------------- 818

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
               GAL  A R+HGN  +GE+AA    ++ PQ+SGI                       
Sbjct: 819 ----GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SK 853

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIV 566
           M + GV+K PG S  EV   ++ F V
Sbjct: 854 MRDVGVQKVPGYSWFEVQNKIHTFSV 879



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 159/344 (46%), Gaps = 26/344 (7%)

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           +++ WN  I+  +R+G    A+ +F  M         V+   M+S   +    NL R + 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMP----RRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
             + E  L       N ++  YV+  +L  A  +FD M  K VVS  +++ GYA+ G++D
Sbjct: 104 DQMPERDLFSW----NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            AR++FD++PEK  + WN ++  YV   R +EA  LF          D ++    +    
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW----DLISWNCLMGGFV 215

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           +   L D  W+   +       + +    ++  YA+ G +++A ++F E P R+  T+TA
Sbjct: 216 RKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTA 271

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           ++ G   +G   +A ++F EM       +E+++  +++       +D  R+ F  M    
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMP--- 324

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
                +  ++ M+   G+ G + +A +    MP   D V W A+
Sbjct: 325 --CRNISSWNTMITGYGQIGDIAQARKFFDMMPQ-RDCVSWAAI 365


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 289/554 (52%), Gaps = 44/554 (7%)

Query: 32  TKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91
            ++L    + ++F WN  IR        R A+  Y   +R     PD +T+P + K CA 
Sbjct: 67  ARLLPGPASRDAFPWNTLIR-LHAPASPRNAL-AYFACMRRAAVEPDAYTFPAVLKACAC 124

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
                LG  +    ++ G D D++  NA++  +   GD      VFD    R+LVSWNS+
Sbjct: 125 ---GVLGLPVHAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHG-ARDLVSWNSM 180

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           + G+V  G    A  LF  M L     D  +   M+ A  +                   
Sbjct: 181 VAGYVACGELELAQELFDGMPLR----DAFSWATMIDAYGK------------------- 217

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
                          + G ++ A E+FD   N+ +V   +MI GYA+ G +D AR +F++
Sbjct: 218 ---------------RSGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEE 262

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +PE+ V+ W+ ++ GYV+     EAL LF  M   GIKPD V  V   +AC+QLGAL+ G
Sbjct: 263 MPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQG 322

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
            W+H ++EK+    +VV+ TAL+DMY KCG +     +F  MP+++ +T+  +I GL  H
Sbjct: 323 RWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTH 382

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
              L A+  F +M   G   D+++ L +L+AC H GL+ EG   F +M   F + PK++H
Sbjct: 383 SCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEH 442

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y  +VDLLGR+G L+ A   I +MPM     +WG+L  ACR H  V + E +  +L  L 
Sbjct: 443 YGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRSHRCVELAELSVERLASLG 502

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
             D G+YVLL+N+Y D  MW+   ++R++M   G++K  G S IEV+G  +EF+    SH
Sbjct: 503 ADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRSVIEVDGQTHEFVNGGSSH 562

Query: 572 PELEQIYDCLVQLT 585
              ++++  L  L+
Sbjct: 563 SCKDEVHLMLQNLS 576



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 7/235 (2%)

Query: 13  PSR-LIAFCAI----SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYK 67
           P+R L+ +C++    +    +D    +   +   N  SW++ + G++  G+  EA++L++
Sbjct: 233 PNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQ 292

Query: 68  QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           +MLR  G +PD       F  CA LG    G  +  ++ K     D+ V  A+I +++ C
Sbjct: 293 RMLRC-GIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKC 351

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G L L   +F+    +++V+WN +I G         A++LF  M+ E    D+++++ ++
Sbjct: 352 GRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVL 411

Query: 188 SACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +AC     ++ G  I H    + G+   V    AL+D+  + G L+ A    ++M
Sbjct: 412 TACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETM 466


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 294/555 (52%), Gaps = 12/555 (2%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           ++  LD   K    +   N ++W+  I      G++  A+ +Y       G  P      
Sbjct: 271 DASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY-------GRDP---VKS 320

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH-NAVIHVFVSCGDLGLACNVFDESCV 142
           +  +     GL   G      +L       + V  NA+I  ++  G +  A  +FD    
Sbjct: 321 IPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           RN +SW  +I G+ ++G   EA+ L + +    + P   ++     AC+ +  L  GR++
Sbjct: 381 RNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQV 440

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H    ++G      + NAL+ MY KC  +E   ++F+ M  K  VS  + I    +   L
Sbjct: 441 HSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNML 500

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           + AR IFD++  + VV W  II  Y QA+R  EA+  F  M     KP++      LS C
Sbjct: 501 EDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVC 560

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             LG+   G  IH    K   +  +++  AL+ MY KCG  A + +VF  M ER+  T+ 
Sbjct: 561 GGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWN 619

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442
             I G A HG   +AI  +  M  VG++P+E+TF+G+L+AC H GLVDEG ++F  MS  
Sbjct: 620 TFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRD 679

Query: 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           + L+P L+HY+CMVDLLGR+G ++ AE+ I  MP+  D V+W AL  AC++H N  IG R
Sbjct: 680 YGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRR 739

Query: 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLY 562
           AA KL   +P ++G YV+L+N+Y    MW E  ++RK+M++RGV K PGCS +++   ++
Sbjct: 740 AAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVH 799

Query: 563 EFIVRDKSHPELEQI 577
            F+  DK H ++E+I
Sbjct: 800 SFVTGDKQHEKIEEI 814



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 201/458 (43%), Gaps = 54/458 (11%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY-E 100
           N  +W V I G++   +  +  D+++ M+ + G  PD   +  +    A  GL+ LG  E
Sbjct: 187 NLVTWTVMISGYVRIEQHGKGWDIFR-MMHHEGASPDQSNFASVLS--AVTGLQDLGVLE 243

Query: 101 IFGH-VLKLGFDVDMYVHNAVIHVFV-SCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           +    VLK GF+ D+ +  ++++V+      L +A   FD    RN  +W+++I      
Sbjct: 244 VLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHG 303

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
           G    AI ++                              GR+            ++P  
Sbjct: 304 GRIDAAIAVY------------------------------GRDP---------VKSIPSQ 324

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
            AL+    +CG++  A  +F+ + +  VVS   MI GY + G +D A+++FD +P +  +
Sbjct: 325 TALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTI 384

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W  +I GY Q  RS+EAL L   +   G+ P   +      ACS +GAL+ G  +H   
Sbjct: 385 SWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLA 444

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K     N  +  AL+ MY KC N+    QVF+ M  ++++++ + I  L  +    DA 
Sbjct: 445 VKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDAR 504

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL--SPKLKHYSCMV 456
             F  M    L  D +++  I+SA       DE  ++F  M        SP L     + 
Sbjct: 505 HIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVC 560

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGAL---FFAC 491
             LG + L ++   +     M ++++V  AL   +F C
Sbjct: 561 GGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKC 598



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 175/379 (46%), Gaps = 21/379 (5%)

Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
           +D   H+A I      G L  A  VFD    R++++WNS+I+ +  SG   +A  LF  +
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMDMYVKCGK 230
               V    + + G            LGR +       G+     +A NA++  YV+ G 
Sbjct: 91  SGGNVRTATILLSGYA---------RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGD 141

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +  A  +FD+M ++ V S  +M+ GY     +  A  +F  +P++ +V W  +I GYV+ 
Sbjct: 142 ITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRI 201

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
           ++  +   +F  M   G  PD       LSA + L  L     +   + K  F  +VV+G
Sbjct: 202 EQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIG 261

Query: 351 TALVDMYAK-CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL 409
           T+++++Y +    +  A++ F  M ERN  T++ +I  L+ HG  +DA         V  
Sbjct: 262 TSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALS-HGGRIDAAIAVYGRDPVKS 320

Query: 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
           +P +   L  L+ C   G + E R  F Q+       P +  ++ M+    ++G+++EA+
Sbjct: 321 IPSQTALLTGLARC---GRITEARILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAK 372

Query: 470 QLIRSMPMAADVVVWGALF 488
           +L   MP   + + W  + 
Sbjct: 373 ELFDRMPF-RNTISWAGMI 390



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 139/287 (48%), Gaps = 8/287 (2%)

Query: 19  FCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78
             A+ ++  L+    I  N+ + +  SW   I  + +  +  EAV+ +K ML     +P+
Sbjct: 491 IAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH-EKPN 549

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           +    +L  VC  LG   LG +I    +K G D ++ V NA++ ++  CG    +  VFD
Sbjct: 550 SPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFD 608

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
               R++ +WN+ I G  + G  REAI+++  M+   V P+EVT +G+++AC+    ++ 
Sbjct: 609 SMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDE 668

Query: 199 GREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEE-IFDSMVNKTVVSCTTMIVGY 256
           G +    +S   GLT  +     ++D+  + G ++ AE+ I+D  +    V  + ++   
Sbjct: 669 GWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGAC 728

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                 +I R+  + L      P NA  G YV       +L ++ E+
Sbjct: 729 KIHKNAEIGRRAAEKLFT--TEPSNA--GNYVMLSNIYSSLGMWVEV 771


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 285/512 (55%), Gaps = 38/512 (7%)

Query: 79  NFTYPL-LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH---VFVSCGDLGLAC 134
           N T+PL L   C SL  R L  ++    +K     D+ V    I+   +  +   +  A 
Sbjct: 19  NTTHPLSLLPKCTSL--RELK-QLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAH 75

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
           ++FD+    ++V +N++  G+ R+  P  A  LF  +    + PD+ T   ++ ACA  +
Sbjct: 76  HLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCK 135

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            L  GR++H    + GL+  V +   L++MY  C ++                       
Sbjct: 136 ALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEM----------------------- 172

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
                   D AR++FD + E  VV +NA+I GY +  R  EAL+LF E+QA  +KP  VT
Sbjct: 173 --------DCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVT 224

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +  LS+C+ LGALD G W+H +++K  FN  V + TAL+DMYAKCG++  A+ VF  M 
Sbjct: 225 MLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMA 284

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            R++  ++A+I   A+HG  L A+S F EM   G  PDEITFLG+L AC H GLV+EG +
Sbjct: 285 VRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFE 344

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           YF  M   + + P +KHY CMVDLLGR+G LEEA + I  +P+    ++W  L  AC  H
Sbjct: 345 YFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSH 404

Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
           GNV +G+R   ++ ELD    G Y++L+N+   +  WE+   VRK+M ERGV K PGCSS
Sbjct: 405 GNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSS 464

Query: 555 IEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +EVN +++EF   D  H    +++  L +L +
Sbjct: 465 VEVNNVVHEFFSGDGVHSVSTKLHQALDELVK 496



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 218/465 (46%), Gaps = 72/465 (15%)

Query: 14  SRLIAFCAISESK-NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN 72
           ++ I FC+++ +  ++ +   +   +  P+   +N   RG+  T     A  L+ Q+L +
Sbjct: 56  TKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFS 115

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
           G   PD++T+P L K CAS      G ++    +KLG   ++YV   +I+++ +C ++  
Sbjct: 116 G-LFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDC 174

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VFD+     +V++N++I G+ R   P EA+ LFR++Q   ++P +VTM+ ++S+CA 
Sbjct: 175 ARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCAL 234

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L  L+LG+ +H Y+ ++G    V +  AL+DMY KCG L+ A  +F++M  +   + + M
Sbjct: 235 LGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAM 294

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I+ YA  G                                  +A++LF EM+  G +PD 
Sbjct: 295 IMAYAIHG-------------------------------HGLKAVSLFKEMRKAGTEPDE 323

Query: 313 VTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           +T +  L ACS  G +++G  + +   +K      +     +VD+  + G + +A +   
Sbjct: 324 ITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEF-- 381

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
                                           ++G+ + P  I +  +LSAC   G V+ 
Sbjct: 382 --------------------------------IVGLPIRPTPILWRTLLSACGSHGNVEL 409

Query: 432 GRKYFAQMSSIFRLSPKL-KHYSCMVDLLGRSGLLEEAEQLIRSM 475
           G++   Q   IF L       Y  + +L  R+G  E+   + + M
Sbjct: 410 GKRVIEQ---IFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLM 451



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 131/264 (49%), Gaps = 6/264 (2%)

Query: 13  PSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN 72
           P+ +  + A +E   +D   ++   +  P   ++N  I G+    +  EA+ L+++ L+ 
Sbjct: 160 PTLINMYTACNE---MDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRE-LQA 215

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL 132
              +P + T   +   CA LG   LG  +  +V K GF+  + V  A+I ++  CG L  
Sbjct: 216 RNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDD 275

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           A  VF+   VR+  +W+++I  +   G   +A+ LF++M+    EPDE+T +G++ AC+ 
Sbjct: 276 AVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSH 335

Query: 193 LEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCT 250
              +  G E  + + +  G+   +     ++D+  + G+LE A E    + +  T +   
Sbjct: 336 TGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWR 395

Query: 251 TMIVGYAKFGFLDIARKIFDDLPE 274
           T++      G +++ +++ + + E
Sbjct: 396 TLLSACGSHGNVELGKRVIEQIFE 419


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 284/497 (57%), Gaps = 8/497 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            + GHV++L      Y+   ++H+  +   +  A  VF +    NL   N++I  + ++ 
Sbjct: 32  RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91

Query: 160 FPREAIRLFRDMQLERVEP-------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             R+A+ ++  M      P       D  T   ++ AC     L LG+++H ++  SG  
Sbjct: 92  QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCD 151

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            +  + N+L++MY + G L  A ++FD M  + VVS   +I  +A+ G +  A  +F+ +
Sbjct: 152 SSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSM 211

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           P+K +V W A++ GY        A+  F  MQ  G +PD V+ V  L AC+QLGAL+ G 
Sbjct: 212 PDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGR 271

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           WI+ + ++     +  +  AL++MYAKCG I +ALQ+F  M +++ ++++ +IGGLA HG
Sbjct: 272 WIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHG 331

Query: 393 KALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           +A +A+  F+EM   G + P+ ITF+G+LSAC + GLVDEG  +F +M+ ++ + P ++H
Sbjct: 332 RAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH 391

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y C+VDLLGRSG +  A  L+R MP+ AD  VWG+L  ACR HG+V     AA +L+EL+
Sbjct: 392 YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELE 451

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P D G  V+LAN+Y  +  W +    RK +  R + KTPGCS IEV  ++ EF+  +   
Sbjct: 452 PDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAGEGLS 511

Query: 572 PELEQIYDCLVQLTRHF 588
            EL  +   L  L  H 
Sbjct: 512 SELGGLAGVLDILASHL 528



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 214/454 (47%), Gaps = 81/454 (17%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +  ++++  C  +  + + +  ++   V++PN    N  I+ + +  + R+AV +Y +ML
Sbjct: 47  YLATQIVHLC--NAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRML 104

Query: 71  RNGGTRPD------NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           R   + PD       FTYP L K C       LG ++  HV++ G D    V N++I ++
Sbjct: 105 RCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMY 164

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL----------------- 167
              GDL LA  VFDE   R++VSWN LI+   R G  R+A  L                 
Sbjct: 165 TRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVS 224

Query: 168 --------------FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
                         FR MQ E  EPD+V+++ ++ ACAQL  L LGR I+ Y    G+  
Sbjct: 225 GYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLT 284

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
           +  + NALM+MY KCG ++ A ++FD M +K V+S                         
Sbjct: 285 STHICNALMEMYAKCGCIDQALQLFDGMADKDVIS------------------------- 319

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI 332
                 W+ +IGG     R+ EA+ LF EM+  G ++P+ +T V  LSACS  G +D+G+
Sbjct: 320 ------WSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGL 373

Query: 333 WIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
                 ++ N    V  G      +VD+  + G I +AL +  +MP   ++  + +++  
Sbjct: 374 ---SHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSA 430

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
              HG    A+     +  V L PD++  L +L+
Sbjct: 431 CRSHGDVDTAVLAAERL--VELEPDDVGNLVMLA 462


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 276/449 (61%), Gaps = 1/449 (0%)

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           LG A  +F +    NL  +N LI  F     P +A   +  M   R+ PD +T   ++ A
Sbjct: 67  LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
            +++E + +G + H  I   G    V + N+L+ MY  CG + +A  IF  M  + VVS 
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           T+M+ GY K G ++ AR++FD++P + +  W+ +I GY +    ++A+ LF  M+  G+ 
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            +    V  +S+C+ LGAL+ G   + ++ K +  +N++LGTALVDM+ +CG+I KA+ V
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  +PE +SL++++II GLA+HG A  A+ YFS+MI +G +P ++TF  +LSAC HGGLV
Sbjct: 307 FEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLV 366

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
           ++G + +  M     + P+L+HY C+VD+LGR+G L EAE  I  M +  +  + GAL  
Sbjct: 367 EKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLG 426

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           AC+++ N  + ER    L+++ P+ SG YVLL+N+Y  +  W++   +R MM+E+ V+K 
Sbjct: 427 ACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKP 486

Query: 550 PGCSSIEVNGLLYEFIV-RDKSHPELEQI 577
           PG S IE++G + +F +  D+ HPE+ +I
Sbjct: 487 PGWSLIEIDGKINKFTMGDDQKHPEMGKI 515



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 196/426 (46%), Gaps = 70/426 (16%)

Query: 4   TGLISHGFAPSRLIAFCAISESKN-----LDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58
           T LIS  F  SRL+A C    + N     L Y   I   +QNPN F +N+ IR F    +
Sbjct: 38  THLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAE 97

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
             +A   Y QML++    PDN T+P L K  + +    +G +    +++ GF  D+YV N
Sbjct: 98  PSKAFGFYTQMLKSR-IWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVEN 156

Query: 119 AVIHVFVSCGDLGLACNV-------------------------------FDESCVRNLVS 147
           +++H++ +CG +  A  +                               FDE   RNL +
Sbjct: 157 SLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFT 216

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           W+ +ING+ ++    +AI LF  M+ E V  +E  M+ ++S+CA L  L  G   + Y+ 
Sbjct: 217 WSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVV 276

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           +S +T+ + L  AL+DM+ +CG +E A  +F+                            
Sbjct: 277 KSHMTVNLILGTALVDMFWRCGDIEKAIHVFEG--------------------------- 309

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
               LPE   + W++II G      + +A+  F +M + G  P  VT    LSACS  G 
Sbjct: 310 ----LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365

Query: 328 LDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAII 385
           ++ G+ I+  ++K++     +     +VDM  + G +A+A     +M  + N+    A++
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALL 425

Query: 386 GGLALH 391
           G   ++
Sbjct: 426 GACKIY 431


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 298/557 (53%), Gaps = 48/557 (8%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D   ++  N+   NS SWN  +  ++  G++ EA                     LLF+
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEAC--------------------LLFE 197

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
             +                    D D+   N ++  FV    LG A  +FD+  VR+ +S
Sbjct: 198 SKS--------------------DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G+ + G   +A RLF     E    D  T   MVS   Q   L+   E   +  
Sbjct: 238 WNTMISGYAQGGGLSQARRLFD----ESPTRDVFTWTAMVSGYVQNGMLD---EAKTFFD 290

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           E      V   NA++  YV+  K++ A E+F+SM  + + S  TMI GY + G +  ARK
Sbjct: 291 EMPEKNEVSY-NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
            FD +P++  V W AII GY Q+   +EAL +F E++  G   +  T    LS C+ + A
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
           L+ G  IH    K  +     +G AL+ MY KCG+I +A   F  + E++ +++  ++ G
Sbjct: 410 LELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAG 469

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
            A HG    A++ F  M   G+ PDEIT +G+LSAC H GL+D G +YF  M+  + + P
Sbjct: 470 YARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIP 529

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             KHY+CM+DLLGR+G LEEA+ LIR+MP       WGAL  A R+HGN  +GE+AA  +
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMV 589

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
            +++PQ+SG+YVLL+N+Y  S  W +A K+R  M + GV+K PG S +EV   ++ F V 
Sbjct: 590 FKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVG 649

Query: 568 DKSHPELEQIYDCLVQL 584
           D SHPE E+IY  L +L
Sbjct: 650 DCSHPEKERIYAYLEEL 666



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 211/461 (45%), Gaps = 33/461 (7%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V++P+   WN AI   +  G    A+ ++  M R            + +    S  LR  
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRS---------SVSYNAMISGYLRNS 94

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
            + +  ++     + D++  N ++  +V    LG A  +FD    +++VSWNSL++G+ +
Sbjct: 95  KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSA---CAQLEDLNLGREIHWYISESGLTLT 214
           +G+  EA  +F +M     E + ++  G+++A     ++E+  L       + ES     
Sbjct: 155 NGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACL-------LFESKSDWD 203

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
           +   N LM  +V+  KL  A  +FD M  +  +S  TMI GYA+ G L  AR++FD+ P 
Sbjct: 204 LISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT 263

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           + V  W A++ GYVQ     EA   F EM     + + V+    ++   Q   +D    I
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMD----I 315

Query: 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
            R + +     N+     ++  Y + G+IA+A + F  MP+R+ +++ AII G A  G  
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC 454
            +A++ F E+   G   +  TF   LS C     ++ G++   Q   +   +      + 
Sbjct: 376 EEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG-NA 434

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           ++ +  + G ++EA      +    DVV W  +      HG
Sbjct: 435 LLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHG 474


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 295/547 (53%), Gaps = 33/547 (6%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCASLGLRFLGYE 100
           NSFSW+  + G+       EA DL++ ML    +    F    +L  V   LGL  +G +
Sbjct: 183 NSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGL-LMGEQ 241

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
           + G ++K G    + V N+++ ++   G +G A +VF+ S  RN ++W+++I G+ ++G 
Sbjct: 242 MHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGE 301

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
              A+ +F  M      P E T +G+++A + L  L +G++ H  + + G  + + + +A
Sbjct: 302 ADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSA 361

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+DMY KCG +  A+E                                FD L E  +V W
Sbjct: 362 LVDMYAKCGCIADAKEG-------------------------------FDQLYEVDIVLW 390

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
            A++ G+VQ    +EAL L+  M   GI P   T    L AC+ + AL+ G  +H  I K
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
               L   +G+AL  MY+KCGN+   + VF  +P+R+ + + +II G + +G    A+  
Sbjct: 451 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 510

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F EM   G +PD ITF+ IL AC H GLVD G +YF+ M+  + L+P+L HY+CMVD+L 
Sbjct: 511 FEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILS 570

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           R+G+L+EA+  I S+ +     +W  +  ACR   +  +G  A  +L+EL  +DS  Y+L
Sbjct: 571 RAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYIL 630

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N+Y     W +  +VR +M  RGV K PGCS +E+N  ++ F+V ++ HPE E I   
Sbjct: 631 LSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQ 690

Query: 581 LVQLTRH 587
           L +L +H
Sbjct: 691 LRRLAKH 697



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 190/412 (46%), Gaps = 48/412 (11%)

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD--LGLACNVFDE--SCVRNLVSWNSLIN 153
           G  +    LK G      V N++I+ + S     L  A  VFD+     R++ SWNSL+N
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90

Query: 154 GFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
              R   P +A+  FR M     V P   +     +A A+      G   H         
Sbjct: 91  PLSRHR-PLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAH--------A 141

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           L   + +A+ ++YV                      CT+++  Y K G +  AR++FD +
Sbjct: 142 LACKIPSAVSNVYV----------------------CTSLLNMYCKLGIVSDARRMFDGM 179

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQLGALDD 330
           P++    W+ ++ GY   K S+EA  LF  M  +    K + V T   LSA S    L  
Sbjct: 180 PQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATA-VLSAVSVPLGLLM 238

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  +H  I K+     V +  +LV MYAK G +  A  VF    ERNS+T++A+I G A 
Sbjct: 239 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQ 298

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKL 449
           +G+A  A+S FS+M   G  P E TF+G+L+A    G +  G++    M  + F +   +
Sbjct: 299 NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYV 358

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           K  S +VD+  + G + +A++    +    D+V+W A+     + G+V  GE
Sbjct: 359 K--SALVDMYAKCGCIADAKEGFDQL-YEVDIVLWTAM-----VSGHVQNGE 402



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 38/179 (21%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  NL+    +   + + +  +WN  I GF + G    A+DL+++M +  GT PDN T+
Sbjct: 468 SKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM-KMEGTIPDNITF 526

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C+ +GL   G+E F  + K                     D GL   +   +C+
Sbjct: 527 INILCACSHMGLVDRGWEYFSLMTK---------------------DYGLTPRLDHYACM 565

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV--SACAQLEDLNLG 199
            +++S         R+G  +EA    +D  +E +  D  T +  +   AC  L D ++G
Sbjct: 566 VDILS---------RAGMLKEA----KDF-IESITIDHGTCLWRIVLGACRSLRDFDVG 610


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 293/558 (52%), Gaps = 30/558 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
            +++ + +   +   +  SW   I G+++ G   EA+ L++ +LR G  +P+ F +  +F
Sbjct: 310 QIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVF 369

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             C+SL     G ++ G  +K G   +++   ++  ++   G L  A   F +    ++V
Sbjct: 370 SACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIV 429

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN++I  F  +G   EAI  FR M    + PD +T I ++  C     LN GR+IH YI
Sbjct: 430 SWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYI 489

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G    + + N+L+ MY KC  L  A  +                       F DI+R
Sbjct: 490 VKIGFDKEITVCNSLLTMYTKCSHLHDALNV-----------------------FRDISR 526

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                     +V WNAI+   +Q K+  E   L+ EM  +G KPD++T    L  C++L 
Sbjct: 527 -------NANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELT 579

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           +L  G  +H +  K    L+V +   L+DMYAKCG++  A  VF      + ++++++I 
Sbjct: 580 SLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIV 639

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A  G   +A++ F  M  +G+ P+E+T+LG LSAC H GLV+EG + +  M +   + 
Sbjct: 640 GYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIP 699

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P  +H+SC+VDLL R+G L EAE  I+   + AD+  W  L  AC+ H NV I ER A  
Sbjct: 700 PTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGN 759

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           +L+LDP +S   V+L N++  +  WEE  K+RK+M++ GV+K PG S IEV    + F  
Sbjct: 760 ILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFS 819

Query: 567 RDKSHPELEQIYDCLVQL 584
            D SHP+   IY  L +L
Sbjct: 820 EDSSHPQRNLIYTMLEEL 837



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 49/334 (14%)

Query: 10  GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           GF PS  +AFC I                +NP+  SWN  I  F + G   EA+D ++QM
Sbjct: 411 GFLPSAKMAFCQI----------------KNPDIVSWNAIIAAFADNGDANEAIDFFRQM 454

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           +  G T PD+ TY  L   C S      G +I  +++K+GFD ++ V N+++ ++  C  
Sbjct: 455 IHIGLT-PDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSH 513

Query: 130 LGLACNVF-DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           L  A NVF D S   NLVSWN++++  ++     E  RL+++M     +PD +T+  ++ 
Sbjct: 514 LHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLG 573

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
            CA+L  L +G ++H Y  +SGL L V + N L+DMY KCG L+ A ++FDS  N  +VS
Sbjct: 574 TCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVS 633

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
            +++IVGYA+ G                                  EAL LF  M   G+
Sbjct: 634 WSSLIVGYAQCGL-------------------------------GHEALNLFRIMTNLGV 662

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +P+ VT +  LSACS +G +++G  +++ +E E+
Sbjct: 663 QPNEVTYLGALSACSHIGLVEEGWRLYKSMETEH 696



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 241/526 (45%), Gaps = 48/526 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +Q PN  SW   I G+ + G+  +A+ +Y QM R+ G  PD  T+  + K C   
Sbjct: 215 KVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRS-GQFPDQLTFGSVIKACYIA 273

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG ++  HV+K  F   +   NA+I ++ + G +  A NVF     ++L+SW ++I
Sbjct: 274 GDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMI 333

Query: 153 NGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
            G+++ G+  EA+ LFRD+  +   +P+E     + SAC+ L +L  G+++H    + GL
Sbjct: 334 TGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGL 393

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
              V    +L DMY K G L SA+  F  + N  +VS                       
Sbjct: 394 RRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVS----------------------- 430

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
                   WNAII  +     + EA+  F +M   G+ PD++T +  L  C     L+ G
Sbjct: 431 --------WNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQG 482

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-NSLTYTAIIGGLAL 390
             IH +I K  F+  + +  +L+ MY KC ++  AL VF ++    N +++ AI+     
Sbjct: 483 RQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQ 542

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCH---GGLVDEGRKYFAQMSSIFRLSP 447
             +  +    + EM   G  PD IT   +L  C      G+ ++   Y  +   I  +S 
Sbjct: 543 KKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSV 602

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL---FFACRLHGNVSIGERAA 504
                + ++D+  + G L+ A  +  S     D+V W +L   +  C L G+ ++     
Sbjct: 603 ----CNGLIDMYAKCGSLKHARDVFDS-TQNLDIVSWSSLIVGYAQCGL-GHEALNLFRI 656

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-ERGVEKT 549
           M  L + P +   Y+   +      + EE  ++ K ME E G+  T
Sbjct: 657 MTNLGVQPNEV-TYLGALSACSHIGLVEEGWRLYKSMETEHGIPPT 701



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 211/434 (48%), Gaps = 35/434 (8%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDMYVH 117
           +EA++ +   L+N  +  +  TY  L   CA+   R L Y  +I  HVLK  +   + + 
Sbjct: 140 KEALEAFDFHLKNSNSHFEPSTYTSLVLACANF--RSLDYAKKIHDHVLKSNYQPSIILQ 197

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N +I+++  CG +  A  VFD   + N+VSW S+I+G+ ++G   +AI ++  M      
Sbjct: 198 NHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQF 257

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
           PD++T   ++ AC    D++LGR++H ++ +S     +   NAL+ MY   G++E A  +
Sbjct: 258 PDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNV 317

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297
           F  +  K ++S  TMI GY + G+   A  +F DL  +     N  I G V         
Sbjct: 318 FTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSV--------- 368

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
                                 SACS L  L+ G  +H    K     NV  G +L DMY
Sbjct: 369 ---------------------FSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMY 407

Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
           AK G +  A   F ++   + +++ AII   A +G A +AI +F +MI +GL PD IT++
Sbjct: 408 AKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYI 467

Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
            +L  C     +++GR+  + +  I     ++   + ++ +  +   L +A  + R +  
Sbjct: 468 SLLCTCGSPVRLNQGRQIHSYIVKI-GFDKEITVCNSLLTMYTKCSHLHDALNVFRDISR 526

Query: 478 AADVVVWGALFFAC 491
            A++V W A+  AC
Sbjct: 527 NANLVSWNAILSAC 540


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 336/621 (54%), Gaps = 61/621 (9%)

Query: 16  LIAFCAISESKNLDYCTKILFN---VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN 72
           + A+CA+    NL+   +I FN   +   +S  +N  I G+   G    A++L++ M R+
Sbjct: 86  ITAYCALG---NLELGREI-FNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD 141

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYE-----IFGHVLKLGFD-VDMYVHNAVIHVFVS 126
              RPD+FT+     V ++L L F+G E     +   V+K G   V   V NA++ V+V 
Sbjct: 142 D-FRPDDFTFT---SVLSALVL-FVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVK 196

Query: 127 -CGDLGLACN-------VFDE------------------------------SCVRNL-VS 147
              +LG++C+       +FDE                              + V NL  +
Sbjct: 197 RASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA 256

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G+V  G  +EA+ L R M+   ++ D++T   ++SACA +    +G+++H YI 
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL 316

Query: 208 ESGL----TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           ++ L    +  + ++NAL+ +Y K  K++ A +IF +M  + +++   ++ GY   G ++
Sbjct: 317 KNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRME 376

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A+  F+++P K ++    +I G  Q     E L LF +M+  G +P        L+ACS
Sbjct: 377 EAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACS 436

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LGAL++G  +H  +    +  ++ +G A++ MYAKCG +  A  VF  MP  + +++ +
Sbjct: 437 VLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNS 496

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I  L  HG  + AI  F +M+  G+ PD ITFL +L+AC H GLV++GR YF  M   +
Sbjct: 497 MIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESY 556

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++P   HY+ MVDL  R+G+   A  +I SMP      VW AL   CR+HGN+ +G  A
Sbjct: 557 GITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEA 616

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A +L +L PQ+ G YVLL+N+Y D   W E  KVRK+M ++ V K P CS IEV   ++ 
Sbjct: 617 AEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHV 676

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F+V D  HPE+  +Y  L QL
Sbjct: 677 FMVDDDVHPEVLSVYRYLEQL 697



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 245/519 (47%), Gaps = 78/519 (15%)

Query: 30  YCTKI-LFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           Y  K+ L + Q+P SFS   A+               +  M+ +G     +F   LL   
Sbjct: 14  YAEKLQLCSPQDPASFSLARAV---------------HAHMIASGFKPRGHFLNRLLEMY 58

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLV 146
           C S  L +   ++F  +     + D      +I  + + G+L L   +F+ + +  R+ V
Sbjct: 59  CKSSNLVY-ARQLFEEIP----NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE----- 201
            +N++I G+  +G    A+ LFR M+ +   PD+ T   ++SA      L +G E     
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALV----LFVGNEQQCGQ 169

Query: 202 IHWYISESGL-TLTVPLANALMDMYVK--------CGKLESAEEIFDSMVNKTVVSCTTM 252
           +H  + ++G+  ++  + NAL+ +YVK        C  + SA ++FD M  +  ++ TTM
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTM 229

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I GY +   L+ AR++F+ + E     WNA+I GYV     +EAL L  +M+  GI+ D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN----VVLGTALVDMYAKCGNIAKALQ 368
           +T    +SAC+ +G+   G  +H +I K   N N    + +  AL+ +Y K   + +A +
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM------------------ 410
           +F+ MP RN +T+ AI+ G    G+  +A S+F EM    L+                  
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEG 409

Query: 411 -------------PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
                        P +  F G L+AC   G ++ GR+  AQ+  +   S  L   + M+ 
Sbjct: 410 LKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYES-SLSVGNAMIS 468

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           +  + G++E AE +  +MP + D+V W ++  A   HG+
Sbjct: 469 MYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGH 506



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 174/401 (43%), Gaps = 56/401 (13%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            +L R +H ++  SG        N L++MY K   L  A ++F+ + N   ++ TT+I  
Sbjct: 29  FSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITA 88

Query: 256 YAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
           Y   G L++ R+IF+  P   +  V +NA+I GY        AL LF  M+    +PD  
Sbjct: 89  YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDF 148

Query: 314 TTVHCLSACSQ-LGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAK--------CGNI 363
           T    LSA    +G       +H  + K     ++  +  AL+ +Y K        C  +
Sbjct: 149 TFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAM 208

Query: 364 AKALQVFHEMPERNSLTYT-------------------------------AIIGGLALHG 392
             A ++F EMP+R+ LT+T                               A+I G    G
Sbjct: 209 VSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCG 268

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---- 448
              +A++   +M  +G+  D+IT+  I+SAC + G    G++  A +     L+P     
Sbjct: 269 CFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN-ELNPNHSFC 327

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG--ERAAMK 506
           L   + ++ L  ++  ++EA ++  +MP+  +++ W A+     L G V+ G  E A   
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPV-RNIITWNAI-----LSGYVNAGRMEEAKSF 381

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             E+  ++     ++ +    +   +E  K+ K M   G E
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 300/514 (58%), Gaps = 16/514 (3%)

Query: 43  SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLRFLGYEI 101
           +F   + IR    +     +   +  +LR G   PD FT P L      L      G ++
Sbjct: 59  TFLQKILIRASASSASPGLSFAAFSSLLRCGLV-PDRFTLPPLLGSAGKLPAFPRTGAQV 117

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSG 159
               ++ GF  D++V NA++ ++ +  D      VF  SC  V ++VSWN++I G+V+ G
Sbjct: 118 HAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFG-SCAGVADVVSWNTVIGGYVKCG 176

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
               A R+F +M       + V+   MV   A   +L++ RE+  +     +   V   N
Sbjct: 177 EMESAKRVFDEMPRR----NGVSWSTMVGGYAAAGELDVAREM--FDRMPAIGRNVVTWN 230

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +++  + + G L  A ++FD M  + +VS   M+ GY+    +D AR++FD +PEK VV 
Sbjct: 231 SMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVS 290

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
           W  +I GY QA R ++ L LF  MQ  + ++P+ VT V  LSAC+ L AL++G W+H FI
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 350

Query: 339 EKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           +K    LN    LG AL+DMYAKCG    A+++F+ +  +N   + A+I  LA++G A D
Sbjct: 351 DKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARD 410

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
           ++  F +M   G  P++ITF+G+L+AC HGGLVDEGR+ F  M+S   + P++KHY CMV
Sbjct: 411 SVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMV 470

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL--LELDPQD 514
           D+LGR+GLLEEAE+LIRSMPMA DV+V+GAL  ACR+H    + ER   ++  L L+ Q 
Sbjct: 471 DMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQ 530

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
           SG +VL++++Y  +  W +  + R++++  G+ K
Sbjct: 531 SGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 39/221 (17%)

Query: 29  DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           D   KI  ++   N  +WN  I      G  R++VD ++QM R  G +P++ T+  +   
Sbjct: 378 DIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRT-GEKPNDITFVGVLTA 436

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
           C+  GL   G   F                           +   C V  E     +  +
Sbjct: 437 CSHGGLVDEGRRCF-------------------------QSMASTCGVQPE-----VKHY 466

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
             +++   R+G   EA  L R M +    PD +    ++ AC   +  ++   +   I  
Sbjct: 467 GCMVDMLGRAGLLEEAEELIRSMPM---APDVMVFGALLGACRMHKRFDVAERVQSEIHS 523

Query: 209 SGLTLTVPLANALM-DMYVKCGK----LESAEEIFDSMVNK 244
             L       + L+ D+Y   GK    LE+ + +  S + K
Sbjct: 524 LNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 304/603 (50%), Gaps = 76/603 (12%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           ++WN+ IR     G   + +++Y  M  + G   +N TYPLL K CA+L     G  + G
Sbjct: 12  YTWNLMIRDSTNNGFFTQTLNIYSSM-AHSGVHGNNLTYPLLLKACANLPSIQHGTMLHG 70

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           HVLKLGF  D +V  A++ ++  C  +  A  VFDE   R++VSWN++++ + R     +
Sbjct: 71  HVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQ 130

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN---LGREIHWYISESGLT-LTVPLAN 219
           A+ L ++M +   EP   T + ++S  + L+      LG+ IH  + + G+  L V LAN
Sbjct: 131 ALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLAN 190

Query: 220 ALMDM-------------------------------YVKCGKLESAEEIFDSM------- 241
           +LM M                               YVK G    A  +F  M       
Sbjct: 191 SLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGI 250

Query: 242 -----------------------VNKTVVSC---------TTMIVGYAKFGFLDIARKIF 269
                                  V+  V+ C           +I  YAK G L  AR+IF
Sbjct: 251 DFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIF 310

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D + EK ++ W ++I GYV      EAL LF  M  T I+P+  T    +SAC+ LG+L 
Sbjct: 311 DLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLS 370

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  I  +I       +  + T+L+ MY+KCG+I KA +VF  + +++   +T++I   A
Sbjct: 371 IGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYA 430

Query: 390 LHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448
           +HG   +AIS F +M    G+MPD I +  +  AC H GLV+EG KYF  M   F ++P 
Sbjct: 431 IHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPT 490

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           ++H +C++DLLGR G L+ A   I+ MP      VWG L  ACR+HGNV +GE A ++LL
Sbjct: 491 VEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELATVRLL 550

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD 568
           +  P  SG YVL+AN+Y     W+EA  +R  M+ +G+ K  G S +EV    + F V +
Sbjct: 551 DSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTYHTFAVGN 610

Query: 569 KSH 571
           +S 
Sbjct: 611 QSQ 613



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 35/285 (12%)

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R+L +WN +I     +GF  + + ++  M    V  + +T   ++ ACA L  +  G  +
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H ++ + G      +  AL+DMY KC  + SA ++FD M  ++VVS              
Sbjct: 69  HGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVS-------------- 114

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                            WNA++  Y +     +AL+L  EM   G +P A T V  LS  
Sbjct: 115 -----------------WNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGY 157

Query: 323 SQLGALDD---GIWIHRFIEKENF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           S L + +    G  IH  + K     L V L  +L+ MY +   + +A +VF  M E++ 
Sbjct: 158 SNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSI 217

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
           +++T +IGG    G A++A   F +M    +  D + FL ++S C
Sbjct: 218 ISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGC 262



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 3/217 (1%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           NL    +I   +   +  SW   I G++  G   EA+DL+++M+R    RP+  T   + 
Sbjct: 302 NLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRT-DIRPNGATLATVV 360

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA LG   +G EI  ++   G + D  V  ++IH++  CG +  A  VF+    ++L 
Sbjct: 361 SACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLT 420

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
            W S+IN +   G   EAI LF  M   E + PD +    +  AC+    +  G +    
Sbjct: 421 VWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKS 480

Query: 206 ISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           + +  G+T TV     L+D+  + G+L+ A      M
Sbjct: 481 MQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGM 517


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 194/625 (31%), Positives = 329/625 (52%), Gaps = 72/625 (11%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   I  +VQ P+ F +NV +RGF        ++ ++  + ++   +P++ TY   F + 
Sbjct: 70  YARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA--FAIS 127

Query: 90  ASLGLR--FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           A+ G R    G  I G  +  G D ++ + + ++ ++     +  A  VFD    ++ + 
Sbjct: 128 AASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTIL 187

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           WN++I+G+ ++    E+I++FRD+  E     D  T++ ++ A A+L++L LG +IH   
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247

Query: 207 SESG-------LTLTVPLA------------------------NALMDMYVKCGKLESAE 235
           +++G       LT  + L                         NA++  Y   G+ E + 
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSL 307

Query: 236 EIFDSMV-------NKTVVS-----------------------------CTTMIVGYAKF 259
            +F  ++       + T+VS                              T +   Y+K 
Sbjct: 308 SLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKL 367

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
             ++ ARK+FD+ PEK +  WNA+I GY Q   +++A++LF EMQ +   P+ VT    L
Sbjct: 368 NEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCIL 427

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC+QLGAL  G W+H  +   +F  ++ + TAL+ MYAKCG+IA+A ++F  M ++N +
Sbjct: 428 SACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV 487

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           T+  +I G  LHG+  +A++ F EM+  G+ P  +TFL +L AC H GLV EG + F  M
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
              +   P +KHY+CMVD+LGR+G L+ A Q I +M +     VW  L  ACR+H + ++
Sbjct: 548 IHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNL 607

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
               + KL ELDP + G +VLL+N++     + +A  VR+  ++R + K PG + IE+  
Sbjct: 608 ARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGE 667

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQL 584
             + F   D+SHP++++IY+ L +L
Sbjct: 668 TPHVFTSGDQSHPQVKEIYEKLEKL 692



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 212/451 (47%), Gaps = 47/451 (10%)

Query: 2   TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
           T TG  SH +  +  I+    S+   +   + +    + P+  ++N  I G+   G+   
Sbjct: 248 TKTGCYSHDYVLTGFISL--YSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETEL 305

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           ++ L+K+++ +G  R  + T   L  V   L    L Y I G+ LK  F     V  A+ 
Sbjct: 306 SLSLFKELMLSGA-RLRSSTLVSLVPVSGHL---MLIYAIHGYCLKSNFLSHASVSTALT 361

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
            V+    ++  A  +FDES  ++L SWN++I+G+ ++G   +AI LFR+MQ     P+ V
Sbjct: 362 TVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPV 421

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+  ++SACAQL  L+LG+ +H  +  +    ++ ++ AL+ MY KCG +  A  +FD M
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K  V+  TMI GY   G                               + +EAL +F+
Sbjct: 482 TKKNEVTWNTMISGYGLHG-------------------------------QGQEALNIFY 510

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWI-HRFIEKENFNLNVVLGTALVDMYAKC 360
           EM  +GI P  VT +  L ACS  G + +G  I +  I +  F  +V     +VD+  + 
Sbjct: 511 EMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRA 570

Query: 361 GNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           G++ +ALQ    M  E  S  +  ++G   +H K  +     SE +   L PD + +  +
Sbjct: 571 GHLQRALQFIEAMSIEPGSSVWETLLGACRIH-KDTNLARTVSEKL-FELDPDNVGYHVL 628

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
           LS       +    + + Q +++ + + K K
Sbjct: 629 LSN------IHSADRNYPQAATVRQTAKKRK 653


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 316/581 (54%), Gaps = 35/581 (6%)

Query: 7   ISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I + F+  R++    +   +++ +L    +  F + N    + N  + G +  G   EA+
Sbjct: 277 IKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAM 336

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++ M+R+   R D  +   +F  CA     F G ++    +K GFDVD+ V+NAV+ +
Sbjct: 337 GLFQFMIRSS-IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDL 395

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L  A  +F     ++ VSWN++I    ++G   + I  F +M    ++PD+ T 
Sbjct: 396 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 455

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA L  L  G  +H  + +SGL     +A+ ++DMY KCG              
Sbjct: 456 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG-------------- 501

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                             +D A+K+ D +  + VV WNAI+ G+   K S+EA   F EM
Sbjct: 502 -----------------IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 544

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              G+KPD  T    L  C+ L  ++ G  IH  I K+    +  + + LVDMYAKCG++
Sbjct: 545 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 604

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             +L VF ++ +R+ +++ A+I G ALHG  ++A+  F  M    ++P+  TF+ +L AC
Sbjct: 605 PDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRAC 664

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL D+G +YF  M++ ++L P+L+H++CMVD+LGRS   +EA + I SMP  AD V+
Sbjct: 665 SHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVI 724

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L   C++  +V I E AA  +L LDP DS +Y+LL+N+Y +S  W +  + R+++++
Sbjct: 725 WKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQ 784

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             ++K PGCS IEV   ++ F+V DK+HP   ++Y+ L  L
Sbjct: 785 GRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDL 825



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 228/496 (45%), Gaps = 46/496 (9%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S + ++     +   + +P+  SWN  + G+ + G  +E+VDL+ +M R G   PD  
Sbjct: 92  AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRG-VSPDRT 150

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+ +L K C++L    LG ++    +K G ++D+   +A++ ++  C  L  A   F   
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             RN VSW + I G V++      + LF +MQ   +   + +      +CA +  LN GR
Sbjct: 211 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H +  ++  +    +  A++D+Y K   L  A   F  + N TV +   M+VG  + G
Sbjct: 271 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 330

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                                             EA+ LF  M  + I+ D V+     S
Sbjct: 331 L-------------------------------GIEAMGLFQFMIRSSIRFDVVSLSGVFS 359

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC++      G  +H    K  F++++ +  A++D+Y KC  + +A  +F  M +++S++
Sbjct: 360 ACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS 419

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC------HGGLVDEGRK 434
           + AII  L  +G   D I +F+EM+  G+ PD+ T+  +L AC       +G +V +   
Sbjct: 420 WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 479

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
                S  F  S        +VD+  + G+++EA++L   +     VV W A+     L+
Sbjct: 480 KSGLGSDAFVAST-------VVDMYCKCGIIDEAQKLHDRIG-GQQVVSWNAILSGFSLN 531

Query: 495 GNVSIGERAAMKLLEL 510
                 ++   ++L++
Sbjct: 532 KESEEAQKFFSEMLDM 547



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 177/389 (45%), Gaps = 43/389 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D    N ++  +   GD+  A  +FD     ++VSWN+L++G+ + G  +E++ LF +M 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V PD  T   ++ +C+ LE+L+LG ++H    ++GL + V   +AL+DMY KC  L+
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A   F  M                               PE+  V W A I G VQ ++
Sbjct: 202 DALCFFYGM-------------------------------PERNWVSWGAAIAGCVQNEQ 230

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
               L LF EMQ  G+     +      +C+ +  L+ G  +H    K  F+ + V+GTA
Sbjct: 231 YVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA 290

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           +VD+YAK  ++  A + F  +P     T  A++ GL   G  ++A+  F  MI   +  D
Sbjct: 291 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFD 350

Query: 413 EITFLGILSACCHGGLVDEGRKYF-AQMSSIFRLSPKLKHYSC----MVDLLGRSGLLEE 467
            ++  G+ SAC       E + YF  Q      +        C    ++DL G+   L E
Sbjct: 351 VVSLSGVFSACA------ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME 404

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHGN 496
           A  + + M    D V W A+  A   +G+
Sbjct: 405 AYLIFQGMKQ-KDSVSWNAIIAALEQNGH 432



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-------SGLTLTVPLANALMDM 224
           Q   V P  VT   +  +CAQ      GRE              SG   T  ++N L+ M
Sbjct: 7   QPPPVAPARVTFSRVFQSCAQA-----GREALAAGRAAHARMVVSGFVPTAFVSNCLLQM 61

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y +C     A  +FD+M  +  VS  TM+  Y+  G +  A  +FD +P+  VV WNA++
Sbjct: 62  YARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALV 121

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q    +E++ LF EM   G+ PD  T    L +CS L  L  G+ +H    K    
Sbjct: 122 SGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLE 181

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           ++V  G+ALVDMY KC ++  AL  F+ MPERN +++ A I G   + + +  +  F EM
Sbjct: 182 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
             +GL   + ++     +C     ++ GR+  A      + S      + +VD+  ++  
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIK-NKFSSDRVVGTAIVDVYAKANS 300

Query: 465 LEEAEQLIRSMP 476
           L +A +    +P
Sbjct: 301 LTDARRAFFGLP 312


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 316/581 (54%), Gaps = 35/581 (6%)

Query: 7   ISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I + F+  R++    +   +++ +L    +  F + N    + N  + G +  G   EA+
Sbjct: 277 IKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAM 336

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++ M+R+   R D  +   +F  CA     F G ++    +K GFDVD+ V+NAV+ +
Sbjct: 337 GLFQFMIRSS-IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDL 395

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L  A  +F     ++ VSWN++I    ++G   + I  F +M    ++PD+ T 
Sbjct: 396 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 455

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA L  L  G  +H  + +SGL     +A+ ++DMY KCG              
Sbjct: 456 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG-------------- 501

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                             +D A+K+ D +  + VV WNAI+ G+   K S+EA   F EM
Sbjct: 502 -----------------IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 544

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              G+KPD  T    L  C+ L  ++ G  IH  I K+    +  + + LVDMYAKCG++
Sbjct: 545 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 604

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             +L VF ++ +R+ +++ A+I G ALHG  ++A+  F  M    ++P+  TF+ +L AC
Sbjct: 605 PDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRAC 664

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL D+G +YF  M++ ++L P+L+H++CMVD+LGRS   +EA + I SMP  AD V+
Sbjct: 665 SHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVI 724

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L   C++  +V I E AA  +L LDP DS +Y+LL+N+Y +S  W +  + R+++++
Sbjct: 725 WKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQ 784

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             ++K PGCS IEV   ++ F+V DK+HP   ++Y+ L  L
Sbjct: 785 GRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDL 825



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 228/496 (45%), Gaps = 46/496 (9%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S + ++     +   + +P+  SWN  + G+ + G  +E+VDL+ +M R G   PD  
Sbjct: 92  AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRG-VSPDRT 150

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+ +L K C++L    LG ++    +K G ++D+   +A++ ++  C  L  A   F   
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             RN VSW + I G V++      + LF +MQ   +   + +      +CA +  LN GR
Sbjct: 211 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H +  ++  +    +  A++D+Y K   L  A   F  + N TV +   M+VG  + G
Sbjct: 271 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 330

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                                             EA+ LF  M  + I+ D V+     S
Sbjct: 331 L-------------------------------GIEAMGLFQFMIRSSIRFDVVSLSGVFS 359

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC++      G  +H    K  F++++ +  A++D+Y KC  + +A  +F  M +++S++
Sbjct: 360 ACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS 419

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC------HGGLVDEGRK 434
           + AII  L  +G   D I +F+EM+  G+ PD+ T+  +L AC       +G +V +   
Sbjct: 420 WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 479

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
                S  F  S        +VD+  + G+++EA++L   +     VV W A+     L+
Sbjct: 480 KSGLGSDAFVAST-------VVDMYCKCGIIDEAQKLHDRIG-GQQVVSWNAILSGFSLN 531

Query: 495 GNVSIGERAAMKLLEL 510
                 ++   ++L++
Sbjct: 532 KESEEAQKFFSEMLDM 547



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 177/389 (45%), Gaps = 43/389 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D    N ++  +   GD+  A  +FD     ++VSWN+L++G+ + G  +E++ LF +M 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V PD  T   ++ +C+ LE+L+LG ++H    ++GL + V   +AL+DMY KC  L+
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A   F  M                               PE+  V W A I G VQ ++
Sbjct: 202 DALCFFYGM-------------------------------PERNWVSWGAAIAGCVQNEQ 230

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
               L LF EMQ  G+     +      +C+ +  L+ G  +H    K  F+ + V+GTA
Sbjct: 231 YVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA 290

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           +VD+YAK  ++  A + F  +P     T  A++ GL   G  ++A+  F  MI   +  D
Sbjct: 291 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFD 350

Query: 413 EITFLGILSACCHGGLVDEGRKYF-AQMSSIFRLSPKLKHYSC----MVDLLGRSGLLEE 467
            ++  G+ SAC       E + YF  Q      +        C    ++DL G+   L E
Sbjct: 351 VVSLSGVFSACA------ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME 404

Query: 468 AEQLIRSMPMAADVVVWGALFFACRLHGN 496
           A  + + M    D V W A+  A   +G+
Sbjct: 405 AYLIFQGMKQ-KDSVSWNAIIAALEQNGH 432



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 147/312 (47%), Gaps = 13/312 (4%)

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-------SGLTLTVPLANALMDM 224
           Q   V P  VT   +  +CAQ      GRE              SG      ++N L+ M
Sbjct: 7   QPPPVAPARVTFSRVFQSCAQA-----GREALAAGRAAHARMVVSGFVPNAFVSNCLLQM 61

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y +C     A  +FD+M  +  VS  TM+  Y+  G +  A  +FD +P+  VV WNA++
Sbjct: 62  YARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALV 121

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q    +E++ LF EM   G+ PD  T    L +CS L  L  G+ +H    K    
Sbjct: 122 SGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLE 181

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           ++V  G+ALVDMY KC ++  AL  F+ MPERN +++ A I G   + + +  +  F EM
Sbjct: 182 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
             +GL   + ++     +C     ++ GR+  A      + S      + +VD+  ++  
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIK-NKFSSDRVVGTAIVDVYAKANS 300

Query: 465 LEEAEQLIRSMP 476
           L +A +    +P
Sbjct: 301 LTDARRAFFGLP 312


>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 319/588 (54%), Gaps = 16/588 (2%)

Query: 6   LISHGFAPSRLIAFCAISESKNLDYCTKILF--NVQNPNSFSWNVAIRGFLETGKMREAV 63
           LI   F  SRLI F AI+  +NLD   K+LF     NPN F +N  I     +    E  
Sbjct: 61  LIGVTFPMSRLIFFSAITYPENLD-LAKLLFLDFTPNPNVFVYNTMISAV--SSSKNECF 117

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIH 122
            LY  M+R     PD  T+  L K  + L       +I  H++  G   +  Y+ N+++ 
Sbjct: 118 GLYSSMIRYR-VSPDRQTFLHLMKASSFLSEV---KQIHCHIIVSGCLSLGNYLWNSLVK 173

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
            ++  G LG A  VF      ++ S+N +I G+ + GF  EA+ L+  M  + +EPDE T
Sbjct: 174 FYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYT 233

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESG--LTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           ++G++  C  L D+ LG+ +H +I   G   +  + L NAL+DMY KC +   A+  FD+
Sbjct: 234 LLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDA 293

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL-AL 299
           +  K + S  TM+VG+ + G ++ A+ +FD +P++ +V WN+++  Y +    + A+  L
Sbjct: 294 LKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVREL 353

Query: 300 FHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           F+EM     +KPD VT V  +S  +  G L  G W+H  + +     +  L +AL+DMY 
Sbjct: 354 FYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAFLSSALIDMYC 413

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG I +A  VF    E++   +T++I G A HG    A+  F  M    + P+++T L 
Sbjct: 414 KCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLA 473

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS-MPM 477
           +L+AC H GLV+EG   F  M   F   P+ +HY  +VDLL R+G LEEA+ ++++ MPM
Sbjct: 474 VLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDIVQNKMPM 533

Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
                +WG++  ACR   ++   E A  +LL+L+P+  G YVLL+N+Y     W  + K 
Sbjct: 534 RPSQSMWGSILSACREGEDIETAELALSELLKLEPEKEGGYVLLSNIYATVGRWGYSDKT 593

Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK-SHPELEQIYDCLVQL 584
           R+ ME RGV+KT G SS+     ++ F+  +K +HP   +I   L  L
Sbjct: 594 REAMESRGVKKTAGYSSVVGVEGVHSFVAAEKQNHPRWTEIKRILQHL 641


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 185/582 (31%), Positives = 309/582 (53%), Gaps = 70/582 (12%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLR 95
            +++P   +W   IR F +     +A+  + +M R  G  PD+  +P + K C  +  LR
Sbjct: 64  TLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM-RASGRCPDHNVFPSVLKSCTMMMDLR 122

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC---NVFDE------------- 139
           F G  + G +++LG D D+Y  NA+++++     +G      NVFDE             
Sbjct: 123 F-GESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 140 ---SCV-----------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
              +C+                 +++VS+N++I G+ +SG   +A+R+ R+M    ++PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T+  ++   ++  D+  G+EIH Y+   G+   V + ++L+DMY K  ++E +E +F 
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            +              Y + G                 + WN+++ GYVQ  R  EAL L
Sbjct: 302 RL--------------YCRDG-----------------ISWNSLVAGYVQNGRYNEALRL 330

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
           F +M    +KP AV     + AC+ L  L  G  +H ++ +  F  N+ + +ALVDMY+K
Sbjct: 331 FRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSK 390

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
           CGNI  A ++F  M   + +++TAII G ALHG   +A+S F EM   G+ P+++ F+ +
Sbjct: 391 CGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAV 450

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L+AC H GLVDE   YF  M+ ++ L+ +L+HY+ + DLLGR+G LEEA   I  M +  
Sbjct: 451 LTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VW  L  +C +H N+ + E+ A K+  +D ++ G YVL+ NMY  +  W+E  K+R 
Sbjct: 511 TGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRL 570

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
            M ++G+ K P CS IE+    + F+  D+SHP +++I + L
Sbjct: 571 RMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFL 612



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 168/367 (45%), Gaps = 27/367 (7%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S  ++   ++   +   +  SWN  + G+++ G+  EA+ L++QM+     +P    +
Sbjct: 288 AKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV-TAKVKPGAVAF 346

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA L    LG ++ G+VL+ GF  ++++ +A++ ++  CG++  A  +FD   V
Sbjct: 347 SSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV 406

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
            + VSW ++I G    G   EA+ LF +M+ + V+P++V  + +++AC+    + L  E 
Sbjct: 407 LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH---VGLVDEA 463

Query: 203 HWYISE----SGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYA 257
             Y +      GL   +    A+ D+  + GKLE A      M V  T    +T++   +
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKRSKEALALFHEMQATGIKP 310
               L++A K+     EK     +  +G YV          R KE   L   M+  G++ 
Sbjct: 524 VHKNLELAEKV----AEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRK 579

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
               +   +   ++      G   H  ++K N  L  V+     +   K G +A    V 
Sbjct: 580 KPACS--WIEMKNKTHGFVSGDRSHPSMDKINEFLKAVM-----EQMEKEGYVADTSGVL 632

Query: 371 HEMPERN 377
           H++ E +
Sbjct: 633 HDVDEEH 639



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 42/257 (16%)

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F  L    V+ W ++I  +       +ALA F EM+A+G  PD       L +C+ +  L
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKC---GNIAKALQVFHEMPERNS------- 378
             G  +H FI +   + ++  G AL++MYAK    G+      VF EMP+R S       
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 379 --------------------------LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
                                     ++Y  II G A  G   DA+    EM    L PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQ 470
             T   +L        V +G++       + R       Y  S +VD+  +S  +E++E+
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGY---VIRKGIDSDVYIGSSLVDMYAKSARIEDSER 298

Query: 471 LIRSMPMAADVVVWGAL 487
           +   +    D + W +L
Sbjct: 299 VFSRL-YCRDGISWNSL 314


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 189/519 (36%), Positives = 283/519 (54%), Gaps = 45/519 (8%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           LR  GT    FTY  L K  A+ GL  +      HV+KLG   D +V NA+I  +     
Sbjct: 125 LRQRGT----FTYSFLIKALAAAGLTPV-RGAHAHVVKLGSAEDTFVGNALIDAYSKNQG 179

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           L  A  VFDE   R++VSWN+ +   VR G    A  +F +M      P++ T       
Sbjct: 180 LSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM------PEKDT------- 226

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
                       + W              N ++D Y K G+ E A E+F  M  + VVS 
Sbjct: 227 ------------VSW--------------NTMLDGYAKAGEAEKAFELFQRMPGRNVVSW 260

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           +T++  Y K G +++AR IFD +P K +V W  ++    Q    +EA  LF EM    I+
Sbjct: 261 STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIE 320

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D +  V  L+AC++ G+L  G  IHR + +   + + ++  AL+DM+ KCG + +A  +
Sbjct: 321 LDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYI 380

Query: 370 FH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           F  E+ E++ +++  IIGG A+HG    A+  F++M   G  PD +T + +LSAC H GL
Sbjct: 381 FDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGL 440

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           V+EGR++FA M + + + P+++HY CMVDLLGR GL++EA  +I+ MP   + V+WG+L 
Sbjct: 441 VEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLL 500

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
            ACRLH NV   E A  +L  L P  +G Y +L+N+Y ++  W +  K R  M+  G +K
Sbjct: 501 SACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQK 560

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           T G S IE+N   +EF V D+ HPE +QI D + +L+ H
Sbjct: 561 TAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSH 599



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 180/374 (48%), Gaps = 43/374 (11%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+++ L    K+   +   +  SWN A+   +  G++  A  ++ +M        D  
Sbjct: 173 AYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM-----PEKDTV 227

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           ++  +    A  G     +E+F  +   G +V  +  + V+  +   GD+ +A  +FD+ 
Sbjct: 228 SWNTMLDGYAKAGEAEKAFELFQRMP--GRNVVSW--STVVSAYCKKGDMEMARVIFDKM 283

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +NLV+W  +++   + G   EA RLF +M    +E D + ++ +++ACA+   L LG+
Sbjct: 284 PAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGK 343

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVNKTVVSCTTMIVGYAKF 259
            IH ++ +  L+ +  + NALMDM+ KCG +  A+ IFD+ +V K +VS           
Sbjct: 344 RIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVS----------- 392

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
                               WN IIGG+      ++AL LF +M+  G  PDAVT ++ L
Sbjct: 393 --------------------WNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVL 432

Query: 320 SACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERN 377
           SAC+ +G +++G      +E +      +     +VD+  + G I +A+ +   MP E N
Sbjct: 433 SACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPN 492

Query: 378 SLTYTAIIGGLALH 391
            + + +++    LH
Sbjct: 493 EVIWGSLLSACRLH 506


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 316/581 (54%), Gaps = 35/581 (6%)

Query: 7   ISHGFAPSRLIAFCAI---SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           I + F+  R++    +   +++ +L    +  F + N    + N  + G +  G   EA+
Sbjct: 319 IKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAM 378

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
            L++ M+R+   R D  +   +F  CA     F G ++    +K GFDVD+ V+NAV+ +
Sbjct: 379 GLFQFMIRSS-IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDL 437

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  L  A  +F     ++ VSWN++I    ++G   + I  F +M    ++PD+ T 
Sbjct: 438 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 497

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++ ACA L  L  G  +H  + +SGL     +A+ ++DMY KCG              
Sbjct: 498 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG-------------- 543

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                             +D A+K+ D +  + VV WNAI+ G+   K S+EA   F EM
Sbjct: 544 -----------------IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 586

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
              G+KPD  T    L  C+ L  ++ G  IH  I K+    +  + + LVDMYAKCG++
Sbjct: 587 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 646

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
             +L VF ++ +R+ +++ A+I G ALHG  ++A+  F  M    ++P+  TF+ +L AC
Sbjct: 647 PDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRAC 706

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H GL D+G +YF  M++ ++L P+L+H++CMVD+LGRS   +EA + I SMP  AD V+
Sbjct: 707 SHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVI 766

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W  L   C++  +V I E AA  +L LDP DS +Y+LL+N+Y +S  W +  + R+++++
Sbjct: 767 WKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQ 826

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
             ++K PGCS IEV   ++ F+V DK+HP   ++Y+ L  L
Sbjct: 827 GRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDL 867



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 228/496 (45%), Gaps = 46/496 (9%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S + ++     +   + +P+  SWN  + G+ + G  +E+VDL+ +M R G   PD  
Sbjct: 134 AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRG-VSPDRT 192

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           T+ +L K C++L    LG ++    +K G ++D+   +A++ ++  C  L  A   F   
Sbjct: 193 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGM 252

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             RN VSW + I G V++      + LF +MQ   +   + +      +CA +  LN GR
Sbjct: 253 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 312

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           ++H +  ++  +    +  A++D+Y K   L  A   F  + N TV +   M+VG  + G
Sbjct: 313 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 372

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                                             EA+ LF  M  + I+ D V+     S
Sbjct: 373 L-------------------------------GIEAMGLFQFMIRSSIRFDVVSLSGVFS 401

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
           AC++      G  +H    K  F++++ +  A++D+Y KC  + +A  +F  M +++S++
Sbjct: 402 ACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS 461

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC------HGGLVDEGRK 434
           + AII  L  +G   D I +F+EM+  G+ PD+ T+  +L AC       +G +V +   
Sbjct: 462 WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 521

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
                S  F  S        +VD+  + G+++EA++L   +     VV W A+     L+
Sbjct: 522 KSGLGSDAFVAST-------VVDMYCKCGIIDEAQKLHDRIG-GQQVVSWNAILSGFSLN 573

Query: 495 GNVSIGERAAMKLLEL 510
                 ++   ++L++
Sbjct: 574 KESEEAQKFFSEMLDM 589



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 181/390 (46%), Gaps = 45/390 (11%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           D    N ++  +   GD+  A  +FD     ++VSWN+L++G+ + G  +E++ LF +M 
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183

Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
              V PD  T   ++ +C+ LE+L+LG ++H    ++GL + V   +AL+DMY KC  L+
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243

Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292
            A   F  M                               PE+  V W A I G VQ ++
Sbjct: 244 DALCFFYGM-------------------------------PERNWVSWGAAIAGCVQNEQ 272

Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
               L LF EMQ  G+     +      +C+ +  L+ G  +H    K  F+ + V+GTA
Sbjct: 273 YVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA 332

Query: 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           +VD+YAK  ++  A + F  +P     T  A++ GL   G  ++A+  F  MI   +  D
Sbjct: 333 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFD 392

Query: 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK------LKHYSCMVDLLGRSGLLE 466
            ++  G+ SAC       E + YF Q   +  L+ K      +   + ++DL G+   L 
Sbjct: 393 VVSLSGVFSACA------ETKGYF-QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALM 445

Query: 467 EAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           EA  + + M    D V W A+  A   +G+
Sbjct: 446 EAYLIFQGMKQ-KDSVSWNAIIAALEQNGH 474



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-------SGLTLTVPLANALMDM 224
           Q   V P  VT   +  +CAQ      GRE              SG   T  ++N L+ M
Sbjct: 49  QPPPVAPARVTFSRVFQSCAQA-----GREALAAGRAAHARMVVSGFVPTAFVSNCLLQM 103

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y +C     A  +FD+M  +  VS  TM+  Y+  G +  A  +FD +P+  VV WNA++
Sbjct: 104 YARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALV 163

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
            GY Q    +E++ LF EM   G+ PD  T    L +CS L  L  G+ +H    K    
Sbjct: 164 SGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLE 223

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           ++V  G+ALVDMY KC ++  AL  F+ MPERN +++ A I G   + + +  +  F EM
Sbjct: 224 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 283

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
             +GL   + ++     +C     ++ GR+  A      + S      + +VD+  ++  
Sbjct: 284 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIK-NKFSSDRVVGTAIVDVYAKANS 342

Query: 465 LEEAEQLIRSMP 476
           L +A +    +P
Sbjct: 343 LTDARRAFFGLP 354


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 189/519 (36%), Positives = 283/519 (54%), Gaps = 45/519 (8%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           LR  GT    FTY  L K  A+ GL  +      HV+KLG   D +V NA+I  +     
Sbjct: 197 LRQRGT----FTYSFLIKALAAAGLTPV-RGAHAHVVKLGSAEDTFVGNALIDAYSKNQG 251

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
           L  A  VFDE   R++VSWN+ +   VR G    A  +F +M      P++ T       
Sbjct: 252 LSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM------PEKDT------- 298

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
                       + W              N ++D Y K G+ E A E+F  M  + VVS 
Sbjct: 299 ------------VSW--------------NTMLDGYAKAGEAEKAFELFQRMPGRNVVSW 332

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           +T++  Y K G +++AR IFD +P K +V W  ++    Q    +EA  LF EM    I+
Sbjct: 333 STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIE 392

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
            D +  V  L+AC++ G+L  G  IHR + +   + + ++  AL+DM+ KCG + +A  +
Sbjct: 393 LDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYI 452

Query: 370 FH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428
           F  E+ E++ +++  IIGG A+HG    A+  F++M   G  PD +T + +LSAC H GL
Sbjct: 453 FDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGL 512

Query: 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           V+EGR++FA M + + + P+++HY CMVDLLGR GL++EA  +I+ MP   + V+WG+L 
Sbjct: 513 VEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLL 572

Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
            ACRLH NV   E A  +L  L P  +G Y +L+N+Y ++  W +  K R  M+  G +K
Sbjct: 573 SACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQK 632

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           T G S IE+N   +EF V D+ HPE +QI D + +L+ H
Sbjct: 633 TAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSH 671



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 180/374 (48%), Gaps = 43/374 (11%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
           A S+++ L    K+   +   +  SWN A+   +  G++  A  ++ +M        D  
Sbjct: 245 AYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM-----PEKDTV 299

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
           ++  +    A  G     +E+F  +   G +V  +  + V+  +   GD+ +A  +FD+ 
Sbjct: 300 SWNTMLDGYAKAGEAEKAFELFQRMP--GRNVVSW--STVVSAYCKKGDMEMARVIFDKM 355

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             +NLV+W  +++   + G   EA RLF +M    +E D + ++ +++ACA+   L LG+
Sbjct: 356 PAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGK 415

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVNKTVVSCTTMIVGYAKF 259
            IH ++ +  L+ +  + NALMDM+ KCG +  A+ IFD+ +V K +VS           
Sbjct: 416 RIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVS----------- 464

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
                               WN IIGG+      ++AL LF +M+  G  PDAVT ++ L
Sbjct: 465 --------------------WNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVL 504

Query: 320 SACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERN 377
           SAC+ +G +++G      +E +      +     +VD+  + G I +A+ +   MP E N
Sbjct: 505 SACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPN 564

Query: 378 SLTYTAIIGGLALH 391
            + + +++    LH
Sbjct: 565 EVIWGSLLSACRLH 578


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 297/557 (53%), Gaps = 33/557 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCAS 91
           ++   +   NSFSW+  + G+       EA DL++ ML    +    F    +L  V   
Sbjct: 68  RVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVP 127

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
           LGL  +G ++ G ++K G    + V N+++ ++   G +G A +VF+ S  RN ++W+++
Sbjct: 128 LGL-LMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAM 186

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I G+ ++G    A+ +F  M      P E T +G+++A + L  L +G++ H  + + G 
Sbjct: 187 ITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGF 246

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            + + + +AL+DMY KCG +  A+E                                FD 
Sbjct: 247 EVQIYVKSALVDMYAKCGCIADAKEG-------------------------------FDQ 275

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           L E  +V W A++ G+VQ    +EAL L+  M   GI P   T    L AC+ + AL+ G
Sbjct: 276 LYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPG 335

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             +H  I K    L   +G+AL  MY+KCGN+   + VF  +P+R+ + + +II G + +
Sbjct: 336 KQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQN 395

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G    A+  F EM   G +PD ITF+ IL AC H GLVD G +YF+ M+  + L+P+L H
Sbjct: 396 GCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDH 455

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y+CMVD+L R+G+L+EA+  I S+ +     +W  +  ACR   +  +G  A  +L+EL 
Sbjct: 456 YACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELG 515

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
             DS  Y+LL+N+Y     W +  +VR +M  RGV K PGCS +E+N  ++ F+V ++ H
Sbjct: 516 TGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQH 575

Query: 572 PELEQIYDCLVQLTRHF 588
           PE E I   L +L +H 
Sbjct: 576 PEAENINAQLRRLAKHM 592



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 180/377 (47%), Gaps = 34/377 (9%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
           ++YV  ++++++   G +  A  VFD    RN  SW++++ G+       EA  LFR M 
Sbjct: 46  NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 105

Query: 173 LE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
            E   E  E     ++SA +    L +G ++H  I + GL   V + N+L+ MY K G +
Sbjct: 106 EECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCM 165

Query: 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK 291
            +A  +F+S   +  ++ + MI GYA+ G  D                            
Sbjct: 166 GAAFHVFESSRERNSITWSAMITGYAQNGEAD---------------------------- 197

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
               A+++F +M A G  P   T V  L+A S LGAL  G   H  + K  F + + + +
Sbjct: 198 ---SAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKS 254

Query: 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411
           ALVDMYAKCG IA A + F ++ E + + +TA++ G   +G+  +A++ ++ M   G++P
Sbjct: 255 ALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIP 314

Query: 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
            + T    L AC     ++ G++   Q+   + L       S +  +  + G LE+   +
Sbjct: 315 SKSTIASGLRACAGIAALEPGKQLHTQIVK-YGLGLGAPVGSALSTMYSKCGNLEDGMSV 373

Query: 472 IRSMPMAADVVVWGALF 488
            R +P   DV+ W ++ 
Sbjct: 374 FRRIP-DRDVIAWNSII 389



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 136/262 (51%), Gaps = 12/262 (4%)

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
             V  CT+++  Y K G +  AR++FD +P++    W+ ++ GY   K S+EA  LF  M
Sbjct: 45  SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104

Query: 304 --QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
             +    K + V T   LSA S    L  G  +H  I K+     V +  +LV MYAK G
Sbjct: 105 LEECPSEKSEFVATA-VLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 163

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            +  A  VF    ERNS+T++A+I G A +G+A  A+S FS+M   G  P E TF+G+L+
Sbjct: 164 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLN 223

Query: 422 ACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           A    G +  G++    M  + F +   +K  S +VD+  + G + +A++    +    D
Sbjct: 224 ASSDLGALAVGKQAHGLMVKLGFEVQIYVK--SALVDMYAKCGCIADAKEGFDQL-YEVD 280

Query: 481 VVVWGALFFACRLHGNVSIGER 502
           +V+W A+     + G+V  GE 
Sbjct: 281 IVLWTAM-----VSGHVQNGEH 297



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 38/179 (21%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  NL+    +   + + +  +WN  I GF + G    A+DL+++M +  GT PDN T+
Sbjct: 362 SKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM-KMEGTIPDNITF 420

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C+ +GL   G+E F  + K                     D GL   +   +C+
Sbjct: 421 INILCACSHMGLVDRGWEYFSLMTK---------------------DYGLTPRLDHYACM 459

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV--SACAQLEDLNLG 199
            +++S         R+G  +EA    +D  +E +  D  T +  +   AC  L D ++G
Sbjct: 460 VDILS---------RAGMLKEA----KDF-IESITIDHGTCLWRIVLGACRSLRDFDVG 504


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 305/567 (53%), Gaps = 40/567 (7%)

Query: 18  AFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           A  A    ++L +    LF+ +  P+  S+N  I  + + G    A+ L+ +M R  G  
Sbjct: 79  ALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEM-REMGLV 137

Query: 77  PDNFTYP-LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
            D FT+  ++   C  +GL     ++       GFD  + V N+++  +   G L  A  
Sbjct: 138 MDGFTFSGVITACCNHVGLI---RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEM 194

Query: 136 VFDE--SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
           VF+     VR+ VSWNS+I  + +     +A+ L+RDM     E D  T+  +++  + +
Sbjct: 195 VFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCV 254

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
           EDL+ G + H    ++G      + + L+DMY KCG                        
Sbjct: 255 EDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCG------------------------ 290

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR-SKEALALFHEMQATGIKPDA 312
                   +  +RK+F+++    +V WN +I GY Q K  S EAL  F +MQ  G  PD 
Sbjct: 291 ------AGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDD 344

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN-VVLGTALVDMYAKCGNIAKALQVFH 371
            + V  +SACS L +   G   H    K     N + +  ALV MY+KCGN+  A ++F 
Sbjct: 345 CSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQ 404

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
            MP+ N++T  +II G A HG   ++++ F +M+   + P  IT + ILSAC H G V+E
Sbjct: 405 RMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEE 464

Query: 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           G+KYF  M  IF + P+ +HYSCM+DLLGR+G L EAE+LI +MP +     W AL  AC
Sbjct: 465 GKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGAC 524

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R +GN+ + E+AA + L+L+P ++  Y++LA+MY  +  WEEA ++RK+M +RG+ K PG
Sbjct: 525 RKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPG 584

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIY 578
           CS IE+N  ++ F+  D SHP +++I+
Sbjct: 585 CSWIELNKRVHVFVAEDNSHPRIKEIH 611



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 185/382 (48%), Gaps = 33/382 (8%)

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           H      + +++  NA+I  +     + +A ++FD+    +LVS+N+LIN +   G    
Sbjct: 64  HAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLS 123

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           A+ LF +M+   +  D  T  G+++AC     + L R++H     SG    V + N+L+ 
Sbjct: 124 ALSLFGEMREMGLVMDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLT 181

Query: 224 MYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283
            Y K G LE AE +F+ M                         ++ D+      V WN++
Sbjct: 182 YYSKNGILEEAEMVFNGM-----------------------GEEVRDE------VSWNSM 212

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           I  Y Q KR  +ALAL+ +M   G + D  T    L+  S +  L  G+  H    K  F
Sbjct: 213 IVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGF 272

Query: 344 NLNVVLGTALVDMYAKCG-NIAKALQVFHEMPERNSLTYTAIIGGLALHGK-ALDAISYF 401
           N N  +G+ L+DMYAKCG  ++++ +VF E+   + + +  +I G + + + +++A+  F
Sbjct: 273 NKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECF 332

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            +M   G  PD+ +F+  +SAC +     +G+++ A        S ++   + +V +  +
Sbjct: 333 RQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSK 392

Query: 462 SGLLEEAEQLIRSMPMAADVVV 483
            G L++A +L + MP    V +
Sbjct: 393 CGNLQDARKLFQRMPQHNTVTL 414



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 148/307 (48%), Gaps = 11/307 (3%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ +C   +DL  G+ +H    +S +  +  L+N  + +Y KC  L +A   F+      
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           V S   +I  YAK   + +A  +FD +P+  +V +N +I  Y     +  AL+LF EM+ 
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 306 TGIKPDAVTTVHCLSA-CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
            G+  D  T    ++A C+ +G +     +H       F+  V +  +L+  Y+K G + 
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQ---LHSLAFSSGFDSYVSVKNSLLTYYSKNGILE 190

Query: 365 KALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +A  VF+ M E  R+ +++ ++I     H + L A++ + +M+  G   D  T   +L+ 
Sbjct: 191 EAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT 250

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHY-SCMVDLLGRSGL-LEEAEQLIRSMPMAAD 480
                 +  G ++ A+  +I     K +H  S ++D+  + G  + E+ ++   +   +D
Sbjct: 251 FSCVEDLSGGLQFHAK--AIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI-CGSD 307

Query: 481 VVVWGAL 487
           +VVW  +
Sbjct: 308 LVVWNTM 314


>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 192/499 (38%), Positives = 285/499 (57%), Gaps = 41/499 (8%)

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLINGF 155
           G     H L+L      ++HN++I ++ SCGD G A  VFD    C R++VSW SLI+  
Sbjct: 130 GRVAHAHGLRLTDGDTRFLHNSLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRL 189

Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
           V+SG P +A+RLF  M    V PD V ++ ++ A  +L+DL                   
Sbjct: 190 VQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKAYMELDDL------------------- 230

Query: 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
           P A +   + VK G        FD    + VV  TT+   YAKFG +  AR +FD +P  
Sbjct: 231 PGAQSAHSLVVKGG--------FDD--EQDVV--TTLTAMYAKFGCIVAARALFDRIPPP 278

Query: 276 YV--VPWNAIIGGYVQAKRSKEALALFHEMQ--ATGIKPDAVTTVHCLSACSQLGALDDG 331
            V  + WNA+I GY +   + EA+ LF +MQ  A  + PD+VT    + AC+QLG+ +  
Sbjct: 279 RVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELA 338

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM--PERNSLTYTAIIGGLA 389
           +W+  ++ +     +V++ TAL+DMYAK G+IA A +VF +M   ER+ + ++A+I G  
Sbjct: 339 VWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYG 398

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            HG   +A+  F +M   G+ P+++TFLG+LSAC H G V++G  YF  M    ++ P+ 
Sbjct: 399 AHGHLAEAVGLFEDMKLAGVKPNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRH 458

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL--HGNVSIGERAAMKL 507
           +HY+C+VDLL R+G L+ A + I  MP+  ++ VWGAL   C++  H N+++ ERAA  +
Sbjct: 459 QHYACVVDLLARAGQLDRAYRFILDMPIKPEMSVWGALLHGCKVHEHSNMAMAERAAQHI 518

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
            EL+  ++G YV LANMY  + MW     VR  M ERGV K  GCSSIEV+G  + F   
Sbjct: 519 FELEQSNAGHYVQLANMYASAGMWSHVAGVRATMRERGVTKATGCSSIEVDGETHNFHAW 578

Query: 568 DKSHPELEQIYDCLVQLTR 586
           D SHP   +I+  L  L++
Sbjct: 579 DHSHPRAAEIFALLCLLSQ 597



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 32  TKILFNVQNP---NSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFK 87
            + LF+   P   N   WN  I G+ + G   EAV L+KQM +      PD+ T   +  
Sbjct: 268 ARALFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIM 327

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE--SCVRNL 145
            CA LG   L   +  +V +     D+ V+ A+I ++   G +  A  VF++  +  R++
Sbjct: 328 ACAQLGSTELAVWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDV 387

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
           V W++LI+G+   G   EA+ LF DM+L  V+P++VT +G++SAC
Sbjct: 388 VVWSALISGYGAHGHLAEAVGLFEDMKLAGVKPNDVTFLGLLSAC 432


>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 300/524 (57%), Gaps = 6/524 (1%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V +P S +WN  IR + +T    +++ +    +  G   PD +TYPLL   C+ L    +
Sbjct: 44  VTHPTS-TWNCLIRAYSKTHTPIKSILVSNYFIELGSFYPDRYTYPLLLNACSRLSFASM 102

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING-FV 156
           G  +  H++K+G D D+YV NA++H + S   L  A  +FD+   R++ SWN+ +   + 
Sbjct: 103 GQLVHTHLIKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYA 162

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL---EDLNLGREIHWYISESGLTL 213
            S    + + LF+ +  E V  D++T++ + SA AQ    E L  G  +H    + GL  
Sbjct: 163 SSNSVIDLMDLFKRLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLVS 222

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            + ++NAL++MY K  ++++A  +FD M   K  VS   +I GY + G +D+A  IF  +
Sbjct: 223 MLNVSNALLNMYTKYRQMDAASRVFDEMGSKKDAVSHAILINGYVEKGLIDLASDIFYQI 282

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
            +K +V WN ++ GY++AKR  +AL LF +M   G+ PD  T V  L+AC+ L  L  G 
Sbjct: 283 FDKDLVLWNVMLHGYIKAKRPIDALELFKKMDNEGLIPDENTMVGILAACASLSDLQYGR 342

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
            +H FI + +   ++ + TAL+DMY KCG+  +AL  F++M  ++  T+TA+I GLA +G
Sbjct: 343 VVHMFINRNDIKQDIFVKTALIDMYFKCGSPEEALVTFYKMEYKDVFTWTAVIEGLANNG 402

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452
               A++ F +M   G+ P+E TF+  L++C H GLV EG + F +M  +++L P+ +H+
Sbjct: 403 YGNVALNLFKQMEEQGIQPNEATFVSALTSCRHSGLVKEGCQMFRKMVEVYKLQPRFEHF 462

Query: 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512
            C++D+L R+GLL +A + ++ +     +  +  +  AC  +    +GE+AA+++ EL P
Sbjct: 463 GCLIDVLSRAGLLAQAYEFVKLLRPEERLAAYKIVLSACIKYLEFDVGEKAALEMAELSP 522

Query: 513 QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           Q   +++LL+N Y  +  WE   K R+ M+     K PG SS E
Sbjct: 523 QSCEMHILLSNFYALAGQWERVAKTRRTMKRLNTRKEPGISSGE 566



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 12  APSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR 71
           A S  I      E   +D  + I + + + +   WNV + G+++  +  +A++L+K+M  
Sbjct: 256 AVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIKAKRPIDALELFKKM-D 314

Query: 72  NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131
           N G  PD  T   +   CASL     G  +   + +     D++V  A+I ++  CG   
Sbjct: 315 NEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFVKTALIDMYFKCGSPE 374

Query: 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
            A   F +   +++ +W ++I G   +G+   A+ LF+ M+ + ++P+E T +  +++C
Sbjct: 375 EALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQMEEQGIQPNEATFVSALTSC 433


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/586 (33%), Positives = 313/586 (53%), Gaps = 69/586 (11%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNP--NSFSWNVAIRGFLETGKMREA 62
           GL  +  A +RL++  A+   + L    ++   +++P  ++F  N  +R +   G  R+A
Sbjct: 379 GLHLNPRAAARLVSAYALL--RLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDA 436

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +  +  M R      D+FTY  L K  ++ G+  +   +  HV+KLG   D +V NA+I 
Sbjct: 437 LAAFSAMPRR-----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALID 490

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
            +   G    A  VFDE   R++VSWN+ +   VR G    A +LF +M      P++ T
Sbjct: 491 AYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM------PEKDT 544

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
                              + W              N ++D Y K G++E+A E+F  M 
Sbjct: 545 -------------------VSW--------------NTILDGYTKAGEVEAAFELFQRMP 571

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            + VVS +TM+ GY K G L++AR IFD +P K +V W  +                   
Sbjct: 572 ERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIM------------------- 612

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362
           M+   ++ D    V  L+AC++ G+L  G  IHR++ K N   +  +  AL+DM+ KCG 
Sbjct: 613 MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 672

Query: 363 IAKALQVFH-EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
           + +A  VF  E  +++S+++ +IIGG A+HG    A+  F++M   G  PD +T + +LS
Sbjct: 673 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLS 732

Query: 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV 481
           AC H G VDEGR+YF+ M   + + P+++HY CM+DLLGR GL++EA  LI+SMP   + 
Sbjct: 733 ACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNE 792

Query: 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
           V+WG+L  ACRLH NV   E A  +L +L P ++G Y +L+N+Y ++  W +  K R  M
Sbjct: 793 VIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQM 852

Query: 542 EERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           +  G +KT G S +E+N   +EF V D+ H + +QI + + +L+ H
Sbjct: 853 KGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSH 898


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 290/557 (52%), Gaps = 32/557 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D  + I   + + +  SWN  I G +  G    A++L  QM ++ G  P+ F    + K
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM-KSSGLVPNVFMLSSILK 311

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA  G   LG +I G ++K   D D Y+   ++ ++     L  A  VFD    R+L+ 
Sbjct: 312 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 371

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN+LI+G    G   EA  +F  ++ E +  +  T+  ++ + A LE  +  R++H    
Sbjct: 372 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 431

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G      + N L+D Y KC  L  A  +F+   +  +++ T+MI   +          
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALS---------- 481

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                Q    + A+ LF EM   G++PD       L+AC+ L A
Sbjct: 482 ---------------------QCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSA 520

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G  +H  + K  F  +   G ALV  YAKCG+I  A   F  +PER  ++++A+IGG
Sbjct: 521 YEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGG 580

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA HG    A+  F  M+  G+ P+ IT   +L AC H GLVDE ++YF  M  +F +  
Sbjct: 581 LAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 640

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HYSCM+DLLGR+G L++A +L+ SMP  A+  VWGAL  A R+H +  +G+ AA KL
Sbjct: 641 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKL 700

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             L+P+ SG +VLLAN Y  S MW E  KVRK+M++  ++K P  S +EV   ++ FIV 
Sbjct: 701 FILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVG 760

Query: 568 DKSHPELEQIYDCLVQL 584
           DKSHP  ++IY  L +L
Sbjct: 761 DKSHPMTKEIYSKLDEL 777



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 191/394 (48%), Gaps = 37/394 (9%)

Query: 31  CTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C + +F+ + +P   SW+  +  +   G  R A+  +  M R  G   + F  P++ K  
Sbjct: 55  CARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAEGVCCNEFALPVVLKCV 113

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES-CVRNLVSW 148
               L   G ++    +  GF  D++V NA++ ++   G +  A  VFDE+   RN VSW
Sbjct: 114 PDAQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSW 170

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N L++ +V++    +AI++F +M    ++P E     +V+AC    +++ GR++H  +  
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR 230

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
            G    V  ANAL+DMYVK G++                               DIA  I
Sbjct: 231 MGYEKDVFTANALVDMYVKMGRV-------------------------------DIASVI 259

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           F+ +P+  VV WNA+I G V       A+ L  +M+++G+ P+       L AC+  GA 
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAF 319

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           D G  IH F+ K N + +  +G  LVDMYAK   +  A++VF  M  R+ + + A+I G 
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGC 379

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           +  G+  +A S F  +   GL  +  T   +L +
Sbjct: 380 SHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 214/462 (46%), Gaps = 37/462 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SWN  +  +++  +  +A+ ++ +M+ +G  +P  F +  +   C        G ++
Sbjct: 166 NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+++G++ D++  NA++ ++V  G + +A  +F++    ++VSWN+LI+G V +G  
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             AI L   M+   + P+   +  ++ ACA     +LGR+IH ++ ++       +   L
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY K   L+ A ++FD M ++                                ++ WN
Sbjct: 345 VDMYAKNHFLDDAMKVFDWMSHRD-------------------------------LILWN 373

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G     R  EA ++F+ ++  G+  +  T    L + + L A      +H   EK 
Sbjct: 374 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 433

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  +  +   L+D Y KC  ++ A++VF E    + +  T++I  L+       AI  F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLF 493

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM+  GL PD      +L+AC      ++G++  A +     +S      + +V    +
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAK 552

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            G +E+AE    S+P    VV W A+      HG+   G+RA
Sbjct: 553 CGSIEDAELAFSSLPERG-VVSWSAMIGGLAQHGH---GKRA 590



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 185/401 (46%), Gaps = 44/401 (10%)

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  +  ++LK GF   +   N +I  +  C     A  VFDE      VSW+SL+  +  
Sbjct: 23  GAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           +G PR AI+ F  M+ E V  +E  +  +V  C  + D  LG ++H     +G    V +
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFAL-PVVLKC--VPDAQLGAQVHAMAMATGFGSDVFV 137

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL-PEKY 276
           ANAL+ MY                                 FGF+D AR++FD+   E+ 
Sbjct: 138 ANALVAMY-------------------------------GGFGFMDDARRVFDEAGSERN 166

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
            V WN ++  YV+  +  +A+ +F EM  +GI+P        ++AC+    +D G  +H 
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHA 226

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
            + +  +  +V    ALVDMY K G +  A  +F +MP+ + +++ A+I G  L+G    
Sbjct: 227 MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SC 454
           AI    +M   GL+P+      IL AC   G  D GR+    M    + +     Y    
Sbjct: 287 AIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM---IKANADSDDYIGVG 343

Query: 455 MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +VD+  ++  L++A ++   M    D+++W AL   C  HG
Sbjct: 344 LVDMYAKNHFLDDAMKVFDWMSH-RDLILWNALISGCS-HG 382


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 290/557 (52%), Gaps = 32/557 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +D  + I   + + +  SWN  I G +  G    A++L  QM ++ G  P+ F    + K
Sbjct: 160 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM-KSSGLVPNVFMLSSILK 218

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
            CA  G   LG +I G ++K   D D Y+   ++ ++     L  A  VFD    R+L+ 
Sbjct: 219 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 278

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN+LI+G    G   EA  +F  ++ E +  +  T+  ++ + A LE  +  R++H    
Sbjct: 279 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 338

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + G      + N L+D Y KC  L  A  +F+   +  +++ T+MI   +          
Sbjct: 339 KIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALS---------- 388

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
                                Q    + A+ LF EM   G++PD       L+AC+ L A
Sbjct: 389 ---------------------QCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSA 427

Query: 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG 387
            + G  +H  + K  F  +   G ALV  YAKCG+I  A   F  +PER  ++++A+IGG
Sbjct: 428 YEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGG 487

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447
           LA HG    A+  F  M+  G+ P+ IT   +L AC H GLVDE ++YF  M  +F +  
Sbjct: 488 LAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 547

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
             +HYSCM+DLLGR+G L++A +L+ SMP  A+  VWGAL  A R+H +  +G+ AA KL
Sbjct: 548 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKL 607

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
             L+P+ SG +VLLAN Y  S MW E  KVRK+M++  ++K P  S +EV   ++ FIV 
Sbjct: 608 FILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVG 667

Query: 568 DKSHPELEQIYDCLVQL 584
           DKSHP  ++IY  L +L
Sbjct: 668 DKSHPMTKEIYSKLDEL 684



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 214/462 (46%), Gaps = 37/462 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ SWN  +  +++  +  +A+ ++ +M+ +G  +P  F +  +   C        G ++
Sbjct: 73  NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIDAGRQV 131

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V+++G++ D++  NA++ ++V  G + +A  +F++    ++VSWN+LI+G V +G  
Sbjct: 132 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 191

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
             AI L   M+   + P+   +  ++ ACA     +LGR+IH ++ ++       +   L
Sbjct: 192 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 251

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +DMY K   L+ A ++FD M ++                                ++ WN
Sbjct: 252 VDMYAKNHFLDDAMKVFDWMSHRD-------------------------------LILWN 280

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
           A+I G     R  EA ++F+ ++  G+  +  T    L + + L A      +H   EK 
Sbjct: 281 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 340

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
            F  +  +   L+D Y KC  ++ A++VF E    + +  T++I  L+       AI  F
Sbjct: 341 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLF 400

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            EM+  GL PD      +L+AC      ++G++  A +     +S      + +V    +
Sbjct: 401 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAK 459

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            G +E+AE    S+P    VV W A+      HG+   G+RA
Sbjct: 460 CGSIEDAELAFSSLPERG-VVSWSAMIGGLAQHGH---GKRA 497



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 173/354 (48%), Gaps = 35/354 (9%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           +R  G   + F  P++ K      L   G ++    +  GF  D++V NA++ ++   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 130 LGLACNVFDES-CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188
           +  A  VFDE+   RN VSWN L++ +V++    +AI++F +M    ++P E     +V+
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVS 248
           AC    +++ GR++H  +   G    V  ANAL+DMYVK G++                 
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV----------------- 160

Query: 249 CTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
                         DIA  IF+ +P+  VV WNA+I G V       A+ L  +M+++G+
Sbjct: 161 --------------DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 206

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368
            P+       L AC+  GA D G  IH F+ K N + +  +G  LVDMYAK   +  A++
Sbjct: 207 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 266

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
           VF  M  R+ + + A+I G +  G+  +A S F  +   GL  +  T   +L +
Sbjct: 267 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 39/304 (12%)

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
           D  LG ++H     +G    V +ANAL+ MY                             
Sbjct: 22  DAQLGAQVHAMAMATGFGSDVFVANALVAMY----------------------------- 52

Query: 255 GYAKFGFLDIARKIFDDL-PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
               FGF+D AR++FD+   E+  V WN ++  YV+  +  +A+ +F EM  +GI+P   
Sbjct: 53  --GGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEF 110

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
                ++AC+    +D G  +H  + +  +  +V    ALVDMY K G +  A  +F +M
Sbjct: 111 GFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM 170

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           P+ + +++ A+I G  L+G    AI    +M   GL+P+      IL AC   G  D GR
Sbjct: 171 PDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGR 230

Query: 434 KYFAQMSSIFRLSPKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491
           +    M    + +     Y    +VD+  ++  L++A ++   M    D+++W AL   C
Sbjct: 231 QIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH-RDLILWNALISGC 286

Query: 492 RLHG 495
             HG
Sbjct: 287 S-HG 289


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 300/566 (53%), Gaps = 43/566 (7%)

Query: 59  MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
           M  +  LY   LR+    PD    P   K C +   + L   +    +  G   D +V +
Sbjct: 1   MSHSNSLY-HFLRHVSFPPDPHLLPSALKSCPA---QPLARALHAAAVVSGLAEDPFVAS 56

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
           +++H ++  G  G A +VFD    +N+V W++LI G+   G    A  L   M+   VEP
Sbjct: 57  SLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEP 116

Query: 179 DEVTMIGMVS------------------------------ACA-----QLEDLNLGREIH 203
           + +T  G+VS                              +CA      ++++++G+++H
Sbjct: 117 NVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVH 176

Query: 204 WYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            Y+ ++G  L   +  AL+DMY KCG+ +    +F    +  V SC  ++ G ++   + 
Sbjct: 177 GYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVS 236

Query: 264 IARKIFDDL----PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
            A  +F +      E  VV W +I+   VQ  R  EA+ LF  MQ+ G++P++VT    L
Sbjct: 237 EALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVL 296

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
            A + + AL  G   H F  ++ F  +V +G+ALVDMYAKCG    A  +F  MP RN +
Sbjct: 297 PAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVV 356

Query: 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439
           ++ A+IGG A+HG A +A+  F  M      PD +TF  +L AC   GL +EGR+YF +M
Sbjct: 357 SWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM 416

Query: 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSI 499
                +SP+++HY+CMV LLGRSG L+EA  LI  MP   D  +WG+L  +CR++GNV +
Sbjct: 417 QQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLL 476

Query: 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559
            E AA KL +L+P ++G YVLL+N+Y    MW+   +VR  M+  G++K  GCS IE+  
Sbjct: 477 AEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKN 536

Query: 560 LLYEFIVRDKSHPELEQIYDCLVQLT 585
            ++  +  D SHP +  I + L QLT
Sbjct: 537 KVHMLLAGDNSHPMMTAITEKLNQLT 562



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 163/392 (41%), Gaps = 69/392 (17%)

Query: 41  PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
           PN  +WN  + G   +G+  +AV    +M  + G  PD             +    +G +
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRM-HSEGFFPDATGVSCALSAVGDVKEVSVGKQ 174

Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR----------------- 143
           + G+V+K G  +D  V  A+I ++  CG       VF ES                    
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 144 ------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
                             N+VSW S++   V++G   EA+ LFR MQ   VEP+ VT+  
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPC 294

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++ A A +  L  GR  H +    G    V + +AL+DMY KCGK   A  IFD+M ++ 
Sbjct: 295 VLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRN 354

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           VVS   MI GYA  G                                +  A+ LF  MQ 
Sbjct: 355 VVSWNAMIGGYAMHG-------------------------------DAANAVQLFCSMQK 383

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
              KPD VT    L ACSQ G  ++G  + +   +    +  +     +V +  + G + 
Sbjct: 384 CKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLD 443

Query: 365 KALQVFHEMP-ERNSLTYTAIIGGLALHGKAL 395
           +A  + +EMP E +S  + +++G   ++G  L
Sbjct: 444 EAYDLINEMPFEPDSCIWGSLLGSCRVYGNVL 475


>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/417 (43%), Positives = 255/417 (61%), Gaps = 2/417 (0%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M ITGLI+H F  SR++AFCA++++ ++ +   +   ++ PN++ WN  IRGF       
Sbjct: 181 MIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMIRGFSNAKMPV 240

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
             +  + QM+R      D  ++    K          G  I   + K+GF   + V N +
Sbjct: 241 MGLSFFWQMVRER-VEMDTRSFVFALKASEQFLTALEGESIHCAIWKIGFPCALLVQNGL 299

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           IH +   G L LA  VFDE+  R++VSW S+I+G+    +  +A++LF  M L  VEP+E
Sbjct: 300 IHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNE 359

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
           VTMI ++SAC+Q  DL+LG+ IH Y+    L L+V L NA++DMYVKCG L +A EIFDS
Sbjct: 360 VTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDS 419

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  K V S T+M+ GYAK G L+IARK FDD+P++ VV WNA+I GY Q  + K+A+ LF
Sbjct: 420 MGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLF 479

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF-IEKENFNLNVVLGTALVDMYAK 359
           H M   G+ P   T V  LSAC QLG LD G  IH + IE++    +V++  AL+DMYAK
Sbjct: 480 HHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIANALIDMYAK 539

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416
           CG I  A +VF+ MP R+ +++ ++I   A HG A  A+  F +MI  G  PD+ITF
Sbjct: 540 CGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPDDITF 596



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 130/499 (26%), Positives = 218/499 (43%), Gaps = 85/499 (17%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLR----NGGTRPDN-----FTYPLLFKVCASLGLR 95
           +W++ I   L +   +  + LY   ++       TR ++      T+P+L  +  S    
Sbjct: 113 TWSLMILKLLSSTTFKHQIVLYHNSVKPFSSTKTTRWNSTTNVIVTHPVLL-IMESCTCM 171

Query: 96  FLGYEIFGHVLKLGFDVDMYVHNAVIH--VFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               +I  H++  G     +  + V+        GD+  A  +F++    N   WN++I 
Sbjct: 172 IQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMIR 231

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           GF  +  P   +  F  M  ERVE D  + +  + A  Q      G  IH  I + G   
Sbjct: 232 GFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTALEGESIHCAIWKIGFPC 291

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + + N L+  Y                               +  G L +ARK+FD+ P
Sbjct: 292 ALLVQNGLIHFY-------------------------------SVHGCLVLARKVFDETP 320

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + VV W ++I GY       +AL LF  M  + ++P+ VT +  LSACSQ G L  G  
Sbjct: 321 ARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKS 380

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH---------------------- 371
           IH ++ ++N NL+V L  A++DMY KCG +  A ++F                       
Sbjct: 381 IHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGE 440

Query: 372 ---------EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
                    +MP+RN +++ A+I G + + +   AI  F  M+G GL+P E T + +LSA
Sbjct: 441 LEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSA 500

Query: 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS-----CMVDLLGRSGLLEEAEQLIRSMPM 477
           C   G +D GR     +  ++ +  K K  S      ++D+  + G+++ A ++   MP 
Sbjct: 501 CGQLGYLDLGR-----LIHMYHIERKQKGTSVIIANALIDMYAKCGVIDAAARVFNGMP- 554

Query: 478 AADVVVWGALFFACRLHGN 496
             D+V W ++  AC  HG+
Sbjct: 555 GRDLVSWNSMIAACASHGH 573



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 7/272 (2%)

Query: 234 AEEIFDSMVNKTV-VSCTTMIVGYAKFGFLDIARKIFDDL--PEKYVVPWNAIIGGYVQA 290
           A  I   ++  T  VS        A  G +  A  +F+ +  P  Y+  WN +I G+  A
Sbjct: 179 AHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYI--WNTMIRGFSNA 236

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
           K     L+ F +M    ++ D  + V  L A  Q     +G  IH  I K  F   +++ 
Sbjct: 237 KMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTALEGESIHCAIWKIGFPCALLVQ 296

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
             L+  Y+  G +  A +VF E P R+ +++T++I G + H    DA+  F  M+   + 
Sbjct: 297 NGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVE 356

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
           P+E+T + +LSAC   G +  G K   +      L+  +   + ++D+  + G L  A +
Sbjct: 357 PNEVTMISVLSACSQKGDLSLG-KSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAARE 415

Query: 471 LIRSMPMAADVVVWGALFFACRLHGNVSIGER 502
           +  SM    DV  W ++       G + I  +
Sbjct: 416 IFDSMG-TKDVFSWTSMVNGYAKTGELEIARK 446


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 297/556 (53%), Gaps = 33/556 (5%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCAS 91
           ++   +   NSFSW+  + G+       EA DL++ ML    +    F    +L  V   
Sbjct: 174 RVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVP 233

Query: 92  LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151
           LGL  +G ++ G ++K G    + V N+++ ++   G +G A +VF+ S  RN ++W+++
Sbjct: 234 LGL-LMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAM 292

Query: 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
           I G+ ++G    A+ +F  M      P E T +G+++A + L  L +G++ H  + + G 
Sbjct: 293 ITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGF 352

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            + + + +AL+DMY KCG +  A+E                                FD 
Sbjct: 353 EVQIYVKSALVDMYAKCGCIADAKEG-------------------------------FDQ 381

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           L E  +V W A++ G+VQ    +EAL L+  M   GI P   T    L AC+ + AL+ G
Sbjct: 382 LYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPG 441

Query: 332 IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH 391
             +H  I K    L   +G+AL  MY+KCGN+   + VF  +P+R+ + + +II G + +
Sbjct: 442 KQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQN 501

Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           G    A+  F EM   G +PD ITF+ IL AC H GLVD G +YF+ M+  + L+P+L H
Sbjct: 502 GCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDH 561

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y+CMVD+L R+G+L+EA+  I S+ +     +W  +  ACR   +  +G  A  +L+EL 
Sbjct: 562 YACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELG 621

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
             DS  Y+LL+N+Y     W +  +VR +M  RGV K PGCS +E+N  ++ F+V ++ H
Sbjct: 622 TGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQH 681

Query: 572 PELEQIYDCLVQLTRH 587
           PE E I   L +L +H
Sbjct: 682 PEAENINAQLRRLAKH 697



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 191/413 (46%), Gaps = 50/413 (12%)

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD--LGLACNVFDE--SCVRNLVSWNSLIN 153
           G  +    LK G      V N++I+ + S     L  A  VFD+     R++ SWNSL+N
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLN 90

Query: 154 GFVRSGF-PREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
               SG  P +A+  FR M     V P   +     +A A+      G   H        
Sbjct: 91  PL--SGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAH-------- 140

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
            L   + +A+ ++YV                      CT+++  Y K G +  AR++FD 
Sbjct: 141 ALACKIPSAVSNVYV----------------------CTSLLNMYCKLGIVSDARRVFDG 178

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVTTVHCLSACSQLGALD 329
           +P++    W+ ++ GY   K S+EA  LF  M  +    K + V T   LSA S    L 
Sbjct: 179 MPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATA-VLSAVSVPLGLL 237

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  +H  I K+     V +  +LV MYAK G +  A  VF    ERNS+T++A+I G A
Sbjct: 238 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPK 448
            +G+A  A+S FS+M   G  P E TF+G+L+A    G +  G++    M  + F +   
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 357

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
           +K  S +VD+  + G + +A++    +    D+V+W A+     + G+V  GE
Sbjct: 358 VK--SALVDMYAKCGCIADAKEGFDQL-YEVDIVLWTAM-----VSGHVQNGE 402



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 38/179 (21%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  NL+    +   + + +  +WN  I GF + G    A+DL+++M +  GT PDN T+
Sbjct: 468 SKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM-KMEGTIPDNITF 526

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   C+ +GL   G+E F  + K                     D GL   +   +C+
Sbjct: 527 INILCACSHMGLVDRGWEYFSLMTK---------------------DYGLTPRLDHYACM 565

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV--SACAQLEDLNLG 199
            +++S         R+G  +EA    +D  +E +  D  T +  +   AC  L D ++G
Sbjct: 566 VDILS---------RAGMLKEA----KDF-IESITIDHGTCLWRIVLGACRSLRDFDVG 610


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 300/572 (52%), Gaps = 62/572 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN+AI G+   G   +AV +YK ML++     +  T+  +  +C+      LG +I G 
Sbjct: 104 SWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQ 163

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV------------------ 146
           +LK GF  D++V + ++ ++   G +  A   FDE   RN+V                  
Sbjct: 164 ILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEES 223

Query: 147 -------------SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193
                        SW  +I G +++G  REA+ +FR+M+L     D+ T   +++AC  L
Sbjct: 224 QRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSL 283

Query: 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
             L  G++IH Y+  +     V + +AL+DMY KC  ++SAE +F  M            
Sbjct: 284 LALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRM------------ 331

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
                              P+K V+ W A++ GY Q   S+EA+ +F EMQ  G++PD  
Sbjct: 332 -------------------PQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDF 372

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    +S+C+ L +L++G   H           + +  AL+ +Y KCG+   + ++F EM
Sbjct: 373 TLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM 432

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
             R+ +++TA++ G A  GKA + I  F  M+  GL PD +TF+G+LSAC   GLV++G 
Sbjct: 433 NIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGL 492

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M     + P + H +C++DLLGR+G LEEA   I +MP   DVV W  L  +CR+
Sbjct: 493 QYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRV 552

Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           HG++ IG+ AA  L+ L+PQ+   YVLL+++Y     W++  ++R+ M ++ V K PG S
Sbjct: 553 HGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYS 612

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            I+  G ++ F   D+S P L QIY  L +L 
Sbjct: 613 WIKYKGKVHVFSADDQSSPFLGQIYAELEKLN 644



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 239/474 (50%), Gaps = 9/474 (1%)

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACN 135
           +P+ F    L      LG     + +F H+ +     +++  N ++ V+   G L     
Sbjct: 37  QPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ----PNLFSWNTILSVYSKLGLLSQMQQ 92

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLE 194
           +F+    R+ VSWN  I+G+   G   +A+R+++ M +   +  + +T   M+  C++  
Sbjct: 93  IFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFR 152

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
            ++LGR+I+  I + G    V + + L+DMY K G +  A+  FD M  + VV C TMI 
Sbjct: 153 CVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMIT 212

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           G  + G ++ ++++F  L E+  + W  +I G +Q    +EAL +F EM+  G   D  T
Sbjct: 213 GLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFT 272

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
               L+AC  L AL +G  IH ++ + +   NV +G+ALVDMY+KC +I  A  VF  MP
Sbjct: 273 FGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMP 332

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           ++N +++TA++ G   +G + +A+  F EM   G+ PD+ T   ++S+C +   ++EG +
Sbjct: 333 QKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ 392

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF--FACR 492
           +  + + +  L   +   + ++ L G+ G  E + +L   M +  D V W AL   +A  
Sbjct: 393 FHCR-ALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNI-RDEVSWTALLAGYAQF 450

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
              N +IG    M    L P       +L+   R   + +       M++E G+
Sbjct: 451 GKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGI 504



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 192/392 (48%), Gaps = 50/392 (12%)

Query: 3   ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           ITGL+  G        FC + E                 +S SW + I G ++ G  REA
Sbjct: 211 ITGLMRCGMIEESQRLFCGLKER----------------DSISWTIMITGLMQNGLEREA 254

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
           +D++++M R  G   D FT+  +   C SL     G +I  +V++     +++V +A++ 
Sbjct: 255 LDMFREM-RLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVD 313

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT 182
           ++  C  +  A  VF     +N++SW +++ G+ ++GF  EA+++F +MQ   VEPD+ T
Sbjct: 314 MYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFT 373

Query: 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           +  ++S+CA L  L  G + H     SGL   + ++NAL+ +Y KCG  E++  +F  M 
Sbjct: 374 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMN 433

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            +  VS T ++ GYA+FG                               ++ E + LF  
Sbjct: 434 IRDEVSWTALLAGYAQFG-------------------------------KANETIGLFER 462

Query: 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAKCG 361
           M A G+KPD VT +  LSACS+ G ++ G+     + KE+  + +V   T ++D+  + G
Sbjct: 463 MLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAG 522

Query: 362 NIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            + +A    + MP   + + +  ++    +HG
Sbjct: 523 RLEEARNFINNMPCHPDVVGWATLLSSCRVHG 554



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 163/366 (44%), Gaps = 43/366 (11%)

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C + ++    +++H  I ++       L+N L+  Y K G L  A  +FD +    
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-Q 304
           + S  T++  Y+K G L   ++IF+ +P +  V WN  I GY       +A+ ++  M +
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
              +  + +T    L  CS+   +D G  I+  I K  F  +V +G+ LVDMY K G I 
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190

Query: 365 KALQVFHEMPERN-------------------------------SLTYTAIIGGLALHGK 393
            A + F EMPERN                               S+++T +I GL  +G 
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGL 250

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY- 452
             +A+  F EM   G   D+ TF  +L+AC     + EG++  A    + R   K   + 
Sbjct: 251 EREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAY---VIRTDHKDNVFV 307

Query: 453 -SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
            S +VD+  +   ++ AE + + MP   +V+ W A+      +G     E A     E+ 
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQ-KNVISWTAMLVG---YGQNGFSEEAVKIFFEM- 362

Query: 512 PQDSGI 517
            Q +G+
Sbjct: 363 -QRNGV 367


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 284/516 (55%), Gaps = 39/516 (7%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           +R     PD +T+P + K C       +G  + G  ++ G D D++  NA+I  +   GD
Sbjct: 1   MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
                 VFD   VR+LVSWNS++ G+V  G    A  LF +M+    + D  +   M+  
Sbjct: 61  CRSGRKVFDHG-VRDLVSWNSMVAGYVGCGEVDLAQDLFDEMR----QRDAFSWATMIDG 115

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
             ++                                   G ++ A E+FD M ++ +V  
Sbjct: 116 YGEM----------------------------------AGGVDRARELFDQMPDRDLVCW 141

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            +MI GYA+ G +D AR +F+++PE+ V+ W+ +I GYV+     EAL  F  M   GIK
Sbjct: 142 NSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIK 201

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD V  V  ++AC+QLGAL+ G W+H ++EK+    +VV+ TAL+DMY KCG +  A  +
Sbjct: 202 PDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLI 261

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F  MP+++ +T+  +I GL  HG  LDAI  F++M       D+++ L +L++C H GLV
Sbjct: 262 FESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLV 321

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            EG   F +M     L PK++HY  ++DLLGR+G +++A   I +MPM     +WG+L  
Sbjct: 322 SEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLA 381

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
           +CR H  V + E +  +L  L   DSG+YVLL+N+Y D  MW++  ++RK+M   G++K 
Sbjct: 382 SCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKN 441

Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
            G S IEV+G ++EF+    SHP  E+IY  L  L+
Sbjct: 442 IGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNLS 477



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 182/374 (48%), Gaps = 47/374 (12%)

Query: 4   TGLISHGFAPSRLIAF-CAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
           TGL +  F  + LI+F C I + ++     + +F+    +  SWN  + G++  G++  A
Sbjct: 39  TGLDADLFTRNALISFYCRIGDCRS----GRKVFDHGVRDLVSWNSMVAGYVGCGEVDLA 94

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASL-GLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
            DL+ +M +      D F++  +      + G      E+F  +     D D+   N++I
Sbjct: 95  QDLFDEMRQR-----DAFSWATMIDGYGEMAGGVDRARELFDQMP----DRDLVCWNSMI 145

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
             +   G +  A  +F+E   RN++SW+ +I+G+VR G P EA+  F+ M    ++PD V
Sbjct: 146 DGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRV 205

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
             +G V+ACAQL  L  GR +H Y+ +  +   V +  AL+DMYVKCG+L+ A+ IF+SM
Sbjct: 206 AAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESM 265

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
             K+VV+   MIVG    G+                                 +A+ LF+
Sbjct: 266 PKKSVVTWNVMIVGLGTHGY-------------------------------GLDAIKLFN 294

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKC 360
           +M+      D ++ +  L++C+  G + +G+ I   +EK+      V    AL+D+  + 
Sbjct: 295 QMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRA 354

Query: 361 GNIAKALQVFHEMP 374
           G + +A      MP
Sbjct: 355 GRVDQARNTIETMP 368


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 283/497 (56%), Gaps = 8/497 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
            + GHV++L      Y+   ++H+  +   +  A  VF +    NL   N++I  + ++ 
Sbjct: 32  RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91

Query: 160 FPREAIRLFRDMQLERVEP-------DEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
             R+A+ ++  M      P       D  T   ++ AC     L LG+++H ++  SG  
Sbjct: 92  QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCD 151

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
            +  + N+L++MY + G L  A ++FD M  + VVS   +I  +A+ G +  A  +F+ +
Sbjct: 152 SSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSM 211

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
           P+K +V W A++ GY        A+  F  MQ  G +PD V+ V  L AC+QLG L+ G 
Sbjct: 212 PDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGR 271

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHG 392
           WI+ + ++     +  +  AL++MYAKCG I +ALQ+F  M +++ ++++ +IGGLA HG
Sbjct: 272 WIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHG 331

Query: 393 KALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
           +A +A+  F+EM   G + P+ ITF+G+LSAC + GLVDEG  +F +M+ ++ + P ++H
Sbjct: 332 RAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH 391

Query: 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511
           Y C+VDLLGRSG +  A  L+R MP+ AD  VWG+L  ACR HG+V     AA +L+EL+
Sbjct: 392 YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELE 451

Query: 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSH 571
           P D G  V+LAN+Y  +  W +    RK +  R + KTPGCS IEV  ++ EF+  +   
Sbjct: 452 PDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAGEGLS 511

Query: 572 PELEQIYDCLVQLTRHF 588
            EL  +   L  L  H 
Sbjct: 512 SELGGLAGVLDILASHL 528



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 214/454 (47%), Gaps = 81/454 (17%)

Query: 11  FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
           +  ++++  C  +  + + +  ++   V++PN    N  I+ + +  + R+AV +Y +ML
Sbjct: 47  YLATQIVHLC--NAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRML 104

Query: 71  RNGGTRPD------NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           R   + PD       FTYP L K C       LG ++  HV++ G D    V N++I ++
Sbjct: 105 RCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMY 164

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL----------------- 167
              GDL LA  VFDE   R++VSWN LI+   R G  R+A  L                 
Sbjct: 165 TRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVS 224

Query: 168 --------------FRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
                         FR MQ E  EPD+V+++ ++ ACAQL  L LGR I+ Y    G+  
Sbjct: 225 GYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLT 284

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
           +  + NALM+MY KCG ++ A ++FD M +K V+S                         
Sbjct: 285 STHICNALMEMYAKCGCIDQALQLFDGMADKDVIS------------------------- 319

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGI 332
                 W+ +IGG     R+ EA+ LF EM+  G ++P+ +T V  LSACS  G +D+G+
Sbjct: 320 ------WSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGL 373

Query: 333 WIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
                 ++ N    V  G      +VD+  + G I +AL +  +MP   ++  + +++  
Sbjct: 374 ---SHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSA 430

Query: 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
              HG    A+     +  V L PD++  L +L+
Sbjct: 431 CRSHGDVDTAVLAAERL--VELEPDDVGNLVMLA 462


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 293/541 (54%), Gaps = 32/541 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   I GF + G   EA+  +++ML     +P+ F +   F  C+ L     G +I G 
Sbjct: 267 SWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGL 326

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G   D++   ++  ++  CG L  A  VF      +LV+WN++I GF      +E+
Sbjct: 327 CIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKES 386

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
              F  M+   + P++VT++ ++ AC++   LN G ++H YI + G  L +P+ N+L+ M
Sbjct: 387 SSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSM 446

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWNAI 283
           Y KC  L                                 A ++F+D+  K  +V WN +
Sbjct: 447 YSKCSNLND-------------------------------ALQVFEDIGNKADIVSWNTL 475

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           +   +Q  ++ E L L   M A+ IKPD VT  + L +  Q+ + + G  IH FI K   
Sbjct: 476 LTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           NL++ +  AL++MY KCG++  A ++F  +   + ++++++I G A  G   +A   F  
Sbjct: 536 NLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRT 595

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M G+G+ P+EITF+GIL+AC H G+V+EG K +  M   +R+SP  +H SCMVDLL R+G
Sbjct: 596 MRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAG 655

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            L+ AE  IR MP   DVVVW  L  AC++HGN+ +G+RAA  +L++DP +S   V+L N
Sbjct: 656 CLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCN 715

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           ++  S  W++  ++R  M    V K PG S IE+   ++ F+  D  HPE  +IY  L +
Sbjct: 716 IHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTMLEE 775

Query: 584 L 584
           L
Sbjct: 776 L 776



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/510 (28%), Positives = 243/510 (47%), Gaps = 47/510 (9%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW   I G+   G+   A+ LY QMLR+G   PD+FT+  + K C+ L    L  ++
Sbjct: 163 NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI-PDHFTFGSIVKSCSGLDDFKLARQL 221

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             HVLK  F  D+   NA+I ++     +  A NVF    +++L+SW S+I GF + G+ 
Sbjct: 222 HAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281

Query: 162 REAIRLFRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            EA+  FR+M  + V +P+E       SAC++L + + GR+IH    + GL   +    +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L DMY KCG LESA                               R +F  + +  +V W
Sbjct: 342 LCDMYAKCGFLESA-------------------------------RTVFYHIEKPDLVAW 370

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NAII G+     +KE+ + F +M+ TG+ P+ VT +  L ACS+   L+ GI +H +I K
Sbjct: 371 NAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVK 430

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKALDAIS 399
             FNL++ +  +L+ MY+KC N+  ALQVF ++  +  + ++  ++       +A + + 
Sbjct: 431 MGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLR 490

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA-QMSSIFRLSPKLKHYSCMVDL 458
               M    + PD +T   +L +       + G +     M S   L   +   + ++++
Sbjct: 491 LTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVS--NALINM 548

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLLELDPQ 513
             + G LE A ++  S+    D++ W +L      +     G+ A      M+ L + P 
Sbjct: 549 YTKCGSLECARKMFDSIG-NPDIISWSSLIVG---YAQAGCGKEAFELFRTMRGLGVKPN 604

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           +   +V +        M EE  K+ + M+E
Sbjct: 605 EI-TFVGILTACSHIGMVEEGLKLYRTMQE 633



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 206/435 (47%), Gaps = 37/435 (8%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           REA+  +    +   +   + TY  L   C+SL     G +I  H+L   +  DM + N 
Sbjct: 79  REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ ++  CG L  A N+FD   ++N+VSW S+I+G+ R G    AI L+  M      PD
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   +V +C+ L+D  L R++H ++ +S     +   NAL+ MY K  ++  A  +F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            ++ K ++S  +MI G+++ G+                                 EAL  
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGY-------------------------------ELEALCH 287

Query: 300 FHEMQATGI-KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           F EM +  + +P+        SACS+L   D G  IH    K     ++  G +L DMYA
Sbjct: 288 FREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYA 347

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +  A  VF+ + + + + + AII G A    A ++ S+FS+M   GL+P+++T L 
Sbjct: 348 KCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLS 407

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MVDLLGRSGLLEEAEQLIRSMP 476
           +L AC    +++ G +     S I ++   L    C  ++ +  +   L +A Q+   + 
Sbjct: 408 LLCACSEPVMLNHGIQVH---SYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIG 464

Query: 477 MAADVVVWGALFFAC 491
             AD+V W  L  AC
Sbjct: 465 NKADIVSWNTLLTAC 479



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 198/369 (53%), Gaps = 37/369 (10%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+    + ++++ P+  +WN  I GF      +E+   + QM R+ G  P++ T   L  
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQM-RHTGLVPNDVTVLSLLC 410

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-NLV 146
            C+   +   G ++  +++K+GF++D+ V N+++ ++  C +L  A  VF++   + ++V
Sbjct: 411 ACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIV 470

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN+L+   ++     E +RL + M   R++PD VT+  ++ +  Q+    +G +IH +I
Sbjct: 471 SWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFI 530

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            +SGL L + ++NAL++MY KCG LE A ++FDS+ N  ++S +++IVGYA         
Sbjct: 531 MKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYA--------- 581

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                 QA   KEA  LF  M+  G+KP+ +T V  L+ACS +G
Sbjct: 582 ----------------------QAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIG 619

Query: 327 ALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTA 383
            +++G+ ++R ++ E++ ++      + +VD+ A+ G +  A     +MP   + + +  
Sbjct: 620 MVEEGLKLYRTMQ-EDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKT 678

Query: 384 IIGGLALHG 392
           ++    +HG
Sbjct: 679 LLAACKVHG 687


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 292/569 (51%), Gaps = 63/569 (11%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           S+N  I GF   G   +AV +Y  +L+ +   RP   T   +    ++LG R LG +   
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHC 164

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV----------------- 146
            +L+LGF  + +V + ++ ++     +G A   FDE   +N+V                 
Sbjct: 165 QILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEE 224

Query: 147 --------------SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
                         +W +++ GF ++G   EA+ +FR M+ + +  D+ T   +++AC  
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           L  L  G++IH YI  +     V + +AL+DMY KC  ++ AE +F  M  K +      
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI------ 338

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
                                    + W A+I GY Q   S+EA+ +F EMQ  GI PD 
Sbjct: 339 -------------------------ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
            T    +S+C+ L +L++G   H           + +  ALV +Y KCG+I  A ++F E
Sbjct: 374 YTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE 433

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           M   + +++TA++ G A  G+A + I  F +M+  G+ PD +TF+G+LSAC   G V++G
Sbjct: 434 MSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKG 493

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
           R YF  M     + P   HY+CM+DL  RSG L+EAE+ I+ MPM  D + WG L  ACR
Sbjct: 494 RSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACR 553

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           L G++ IG+ AA  LLE+DPQ+   YVLL +M+     W E  ++R+ M +R V+K PGC
Sbjct: 554 LRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGC 613

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           S I+    ++ F   D+SHP  + IY+ L
Sbjct: 614 SWIKYKNKVHIFSADDQSHPCSKGIYEKL 642



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 120/381 (31%), Positives = 198/381 (51%), Gaps = 12/381 (3%)

Query: 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM- 171
           +++ +NA++        L     +F     R++VS+N++I GF   G   +A+R++  + 
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 172 -QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230
                V P  +TM  MV A + L D  LG++ H  I   G      + + L+DMY K   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
           +  A+  FD + +K VV   TMI G  +   ++ AR++F+ + ++  + W  ++ G+ Q 
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG 350
               EAL +F  M+  GI  D  T    L+AC  L AL+ G  IH +I +  ++ NV +G
Sbjct: 251 GLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVG 310

Query: 351 TALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM 410
           +ALVDMY+KC +I  A  VF  M  +N +++TA+I G   +G + +A+  FSEM   G+ 
Sbjct: 311 SALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY----SCMVDLLGRSGLLE 466
           PD+ T   ++S+C +   ++EG ++         L   L HY    + +V L G+ G +E
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 467 EAEQLIRSMPMAADVVVWGAL 487
           +A +L   M    D V W AL
Sbjct: 426 DAHRLFDEMSF-HDQVSWTAL 445



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 183/342 (53%), Gaps = 34/342 (9%)

Query: 35  LFNV-QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LF V  + +S +W   + GF + G   EA++++++M R  G   D +T+  +   C +L 
Sbjct: 228 LFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM-RFQGIAIDQYTFGSILTACGALS 286

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G +I  ++++  +D +++V +A++ ++  C  + LA  VF     +N++SW +LI 
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIV 346

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G+ ++G   EA+R+F +MQ + ++PD+ T+  ++S+CA L  L  G + H     SGL  
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMH 406

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            + ++NAL+ +Y KCG +E A  +FD M     VS T ++ GYA+FG             
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFG------------- 453

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
                             R+KE + LF +M A G+KPD VT +  LSACS+ G ++ G  
Sbjct: 454 ------------------RAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 334 IHRFIEKENFNLNVVLG-TALVDMYAKCGNIAKALQVFHEMP 374
               ++K++  + +    T ++D+Y++ G + +A +   +MP
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMP 537



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 30/348 (8%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+ +++     +   +   N  SW   I G+ + G   EAV ++ +M R+ G  PD++T 
Sbjct: 318 SKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD-GIDPDDYTL 376

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA+L     G +     L  G    + V NA++ ++  CG +  A  +FDE   
Sbjct: 377 GSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF 436

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE- 201
            + VSW +L++G+ + G  +E I LF  M  + V+PD VT IG++SAC++   +  GR  
Sbjct: 437 HDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSY 496

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFG 260
            H    + G+         ++D+Y + GKL+ AEE    M ++   +   T++      G
Sbjct: 497 FHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556

Query: 261 FLDIARKIFDDL-------PEKYVV---------PWNAIIGGYVQAKRSKEALALFHEMQ 304
            ++I +   ++L       P  YV+          WN +     Q +R      +  E  
Sbjct: 557 DMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEV----AQLRRGMRDRQVKKEPG 612

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGI-----WIHRFIEKENFNLNV 347
            + IK      VH  SA  Q      GI     W++  + +E +  +V
Sbjct: 613 CSWIKYK--NKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDV 658



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 146/333 (43%), Gaps = 37/333 (11%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+  Y K G+   A  +FD+M +  + +   ++   A    L     +F  + ++ 
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRD 102

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHE-MQA-TGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           +V +NA+I G+       +A+ ++   +QA + ++P  +T    + A S LG    G   
Sbjct: 103 IVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162

Query: 335 HRFIEKENFNLNVVLGTALVDMYAK-------------------------------CGNI 363
           H  I +  F  N  +G+ LVDMYAK                               C  +
Sbjct: 163 HCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMV 222

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A ++F  M +R+S+T+T ++ G   +G   +A+  F  M   G+  D+ TF  IL+AC
Sbjct: 223 EEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTAC 282

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
                +++G++  A +    R    +   S +VD+  +   ++ AE + R M    +++ 
Sbjct: 283 GALSALEQGKQIHAYIIRT-RYDDNVFVGSALVDMYSKCRSIKLAETVFRRM-TCKNIIS 340

Query: 484 WGALFFACRLHGNVSIGER--AAMKLLELDPQD 514
           W AL      +G      R  + M+   +DP D
Sbjct: 341 WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 270/451 (59%), Gaps = 21/451 (4%)

Query: 148 WNSLINGFVR---SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           WN +I   V    S      I ++  M+  RV PD  T   ++ +      L LG+  H 
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
            I   GL     +  +L++MY  CG L SA+ +FD   +K + +  +++  YAK G +D 
Sbjct: 87  QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-----IKPDAVTTVHCL 319
           ARK+FD++PE+ V+ W+ +I GYV   + KEAL LF EMQ        ++P+  T    L
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379
           SAC +LGAL+ G W+H +I+K +  +++VLGTAL+DMYAKCG++ +A +VF+ +  +  +
Sbjct: 207 SACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDV 266

Query: 380 -TYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFA 437
             Y+A+I  LA++G   +    FSEM     + P+ +TF+GIL AC H GL++EG+ YF 
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFK 326

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M   F ++P ++HY CMVDL GRSGL++EAE  I SMPM  DV++WG+L    R+ G++
Sbjct: 327 MMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDI 386

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
              E A  +L+ELDP +SG YVLL+N+Y  +  W E           G+ K PGCS +EV
Sbjct: 387 KTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME-----------GINKVPGCSYVEV 435

Query: 558 NGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
            G+++EF+V D+S  E E+IY  L ++ +  
Sbjct: 436 EGVVHEFVVGDESQQESERIYAMLDEIMQRL 466



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 178/393 (45%), Gaps = 75/393 (19%)

Query: 43  SFSWNVAIRGFLE---TGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           SF WN+ IR  +    + +    + +Y +M RN    PD  T+P L     +     LG 
Sbjct: 24  SFLWNIIIRAIVHNVSSPQRHSPISVYLRM-RNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS--------- 150
                +L  G D D +V  ++++++ SCGDL  A  VFD+S  ++L +WNS         
Sbjct: 83  RTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAG 142

Query: 151 ----------------------LINGFVRSGFPREAIRLFRDMQLER-----VEPDEVTM 183
                                 LING+V  G  +EA+ LFR+MQL +     V P+E TM
Sbjct: 143 LIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTM 202

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-V 242
             ++SAC +L  L  G+ +H YI +  + + + L  AL+DMY KCG LE A+ +F+++  
Sbjct: 203 STVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS 262

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K V + + MI   A +G  D                               E   LF E
Sbjct: 263 KKDVKAYSAMICCLAMYGLTD-------------------------------ECFQLFSE 291

Query: 303 MQAT-GIKPDAVTTVHCLSACSQLGALDDG-IWIHRFIEKENFNLNVVLGTALVDMYAKC 360
           M  +  I P++VT V  L AC   G +++G  +    IE+     ++     +VD+Y + 
Sbjct: 292 MTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRS 351

Query: 361 GNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
           G I +A      MP E + L + +++ G  + G
Sbjct: 352 GLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 384



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 21  AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML----RNGGTR 76
           A +++  +D   K+   +   N  SW+  I G++  GK +EA+DL+++M          R
Sbjct: 137 AYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVR 196

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+ FT   +   C  LG    G  +  ++ K   ++D+ +  A+I ++  CG L  A  V
Sbjct: 197 PNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRV 256

Query: 137 FDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-ERVEPDEVTMIGMVSACAQLE 194
           F+     +++ +++++I      G   E  +LF +M   + + P+ VT +G++ AC    
Sbjct: 257 FNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRG 316

Query: 195 DLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
            +N G+      I E G+T ++     ++D+Y + G ++ AE    SM
Sbjct: 317 LINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 364


>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
          Length = 475

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 270/448 (60%), Gaps = 4/448 (0%)

Query: 138 DESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-- 195
           ++S    +VSW S I    RS    EA + F DM+L  VEP  +T I ++S C       
Sbjct: 4   NQSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSGS 63

Query: 196 LNLGREIHWYISESGLTLT-VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
             LG  +H Y  + GL    V +  A++ MY K G+++ A  +FD M +K  V+  TMI 
Sbjct: 64  ETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMID 123

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           GY + G +  A K+FD +PE  ++ W A++ G+V+    +EAL  F EMQ +G+KPD V 
Sbjct: 124 GYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVA 183

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +  L+AC+ LGAL  G+W+HR++  ++F  NV +  +L+D+Y +CG +  A +VF +M 
Sbjct: 184 IIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKME 243

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
           +R  +++ ++I G A +G A +++ YF +M   G  P+ +TF G L+AC H GLVDEG +
Sbjct: 244 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLR 303

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
           +F  M   + +SP+++HY C+VDL  R+G LE+A ++++SMPM  + VV G+L  ACR H
Sbjct: 304 FFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNH 363

Query: 495 GNVSI-GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           GN ++  ER    L +L+ +    YV+L+NMY     WE A ++R+ M+  G++K PG S
Sbjct: 364 GNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADAKWEGASRMRRKMKGLGLKKQPGFS 423

Query: 554 SIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           SIE++   + F+  D +H E   I + L
Sbjct: 424 SIEIDDCTHVFMAGDSAHVETAYIREVL 451



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 180/387 (46%), Gaps = 74/387 (19%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL--GLRFLGYEIF 102
           SW   I     +  + EA   +  M R  G  P + T+  L   C     G   LG  + 
Sbjct: 13  SWTSRITLLTRSAXLAEAAKEFADM-RLAGVEPTHITFIALLSGCGDFPSGSETLGDLLH 71

Query: 103 GHVLKLGFD----------VDMY----------------------VHNAVIHVFVSCGDL 130
           G+  KLG D          + MY                        N +I  ++  G +
Sbjct: 72  GYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQV 131

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
             A  +FD+    +L+SW +++NGFV+ GF  EA+  FR+MQ+  V+PD V +I  ++AC
Sbjct: 132 HNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNAC 191

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
             L  L+LG  +H Y+        V ++N+L+D+Y +CG +E A E+FD M  +TVVS  
Sbjct: 192 TNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWN 251

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           ++IVG+A  G                                + E+L  F +MQ  G KP
Sbjct: 252 SVIVGFAANG-------------------------------NAHESLVYFRKMQEEGFKP 280

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLG--TALVDMYAKCGNIAKA 366
           +AVT    L+ACS +G +D+G+   RF +  K ++N++  +     LVD+Y++ G +  A
Sbjct: 281 NAVTFTGALTACSHVGLVDEGL---RFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDA 337

Query: 367 LQVFHEMPER-NSLTYTAIIGGLALHG 392
           L+V   MP + N +   +++     HG
Sbjct: 338 LKVVQSMPMKPNEVVIGSLLAACRNHG 364



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
            S  +    K+   +  P+  SW   + GF++ G   EA+  +++M +  G +PD     
Sbjct: 127 RSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREM-QISGVKPDYVAII 185

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                C +LG   LG  +  +V+   F  ++ V N++I ++  CG +  A  VFD+   R
Sbjct: 186 AALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKR 245

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG-REI 202
            +VSWNS+I GF  +G   E++  FR MQ E  +P+ VT  G ++AC+ +  ++ G R  
Sbjct: 246 TVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFF 305

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
                +  ++  +     L+D+Y + G+LE A ++  SM
Sbjct: 306 QSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSM 344


>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 686

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/518 (37%), Positives = 291/518 (56%), Gaps = 44/518 (8%)

Query: 82  YPLLFKVCASLG---LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           +P      A++G       G     H L+L      ++HN++I ++ SCGD G A  VFD
Sbjct: 188 HPAFLPPAAAIGDVLKSVPGRVAHAHGLRLTDGDTRFLHNSLIPMYFSCGDAGRARRVFD 247

Query: 139 --ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
               C R++VSW SLI+  V+SG P +A+RLF  M    V PD V ++ ++ A  +L+DL
Sbjct: 248 GMRDCERDVVSWTSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKAYMELDDL 307

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
                              P A +   + VK G        FD    + VV  TT+   Y
Sbjct: 308 -------------------PGAQSAHSLVVKGG--------FDD--EQDVV--TTLTAMY 336

Query: 257 AKFGFLDIARKIFDDLPEKYV--VPWNAIIGGYVQAKRSKEALALFHEMQ--ATGIKPDA 312
           AKFG +  AR +FD +P   V  + WNA+I GY +   + EA+ LF +MQ  A  + PD+
Sbjct: 337 AKFGCIVAARALFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDS 396

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
           VT    + AC+QLG+ +  +W+  ++ +     +V++ TAL+DMYAK G+IA A +VF +
Sbjct: 397 VTLRSVIMACAQLGSTELAVWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQ 456

Query: 373 M--PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
           M   ER+ + ++A+I G   HG   +A+  F +M   G+ P+++TFLG+LSAC H G V+
Sbjct: 457 MHAQERDVVVWSALISGYGAHGHLAEAVGLFEDMKLAGVKPNDVTFLGLLSACNHAGAVE 516

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
           +G  YF  M    ++ P+ +HY+C+VDLL R+G L+ A + I  MP+  ++ VWGAL   
Sbjct: 517 KGWFYFHSMKPDHKIEPRHQHYACVVDLLARAGQLDRAYRFILDMPIKPEMSVWGALLHG 576

Query: 491 CRL--HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548
           C++  H N+++ ERAA  + EL+  ++G YV LANMY  + MW     VR  M ERGV K
Sbjct: 577 CKMHEHSNMAMAERAAQHIFELEQSNAGHYVQLANMYASAGMWSHVAGVRATMRERGVTK 636

Query: 549 TPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             GCSSIEV+G  + F   D SHP   +I+  L  L++
Sbjct: 637 ATGCSSIEVDGETHNFHAWDHSHPRAAEIFALLCLLSQ 674



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 32  TKILFNVQNP---NSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLLFK 87
            + LF+   P   N   WN  I G+ + G   EAV L+KQM +      PD+ T   +  
Sbjct: 345 ARALFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIM 404

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE--SCVRNL 145
            CA LG   L   +  +V +     D+ V+ A+I ++   G +  A  VF++  +  R++
Sbjct: 405 ACAQLGSTELAVWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDV 464

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
           V W++LI+G+   G   EA+ LF DM+L  V+P++VT +G++SAC
Sbjct: 465 VVWSALISGYGAHGHLAEAVGLFEDMKLAGVKPNDVTFLGLLSAC 509


>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
 gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/517 (38%), Positives = 287/517 (55%), Gaps = 71/517 (13%)

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121
           A D   QM    G  P  FT+P + K CA       G ++ G + K+ F  D+YV N+++
Sbjct: 61  ACDFLSQM--EDGFLPYMFTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCDIYVENSLV 118

Query: 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181
           H +  CG L                                +A R+F +M +     D V
Sbjct: 119 HFYSVCGSLD-------------------------------DASRVFDEMLVR----DAV 143

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           +  G++    +   L LG+ IH  I E G  L + ++NALMDMYVKC  L   EE     
Sbjct: 144 SWTGVIYPGIK-GYLILGKGIHGLIIERGFGLGLEVSNALMDMYVKCESL--PEE----- 195

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301
                                   +++FD+LPEK +V W +II G VQ K  KE L LF 
Sbjct: 196 ------------------------KQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFC 231

Query: 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361
           ++Q++GI+PD +     LSA +  GALD G  +  +I+ +    ++ +GTA+VDMYAKCG
Sbjct: 232 DVQSSGIEPDGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCG 291

Query: 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421
            I  A+Q+F+ MP +N LT+ A++ GLA+HG    A+  F EM+  G+ P+E+TFL  L+
Sbjct: 292 CIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLT 351

Query: 422 ACCHGGLVDEGRKYFAQM-SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
           ACCH G V EGR+YF  M S  + L P+L+HY CMVDLL R+GLL+EA +L ++MPM  D
Sbjct: 352 ACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPD 411

Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
           V + GAL   C+ +GNV +      +L+E D +DSG+YVLL+N+   +  W +  ++R++
Sbjct: 412 VRIMGALLSTCKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRL 471

Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           M + G+EKTPG S IEV+G  +E IV D  +P+ + I
Sbjct: 472 M-KMGIEKTPGSSVIEVDGKAHEIIVGDLRYPQDKHI 507



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 154/320 (48%), Gaps = 39/320 (12%)

Query: 57  GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116
           G + +A  ++ +ML           YP         G   LG  I G +++ GF + + V
Sbjct: 125 GSLDDASRVFDEMLVRDAVSWTGVIYP------GIKGYLILGKGIHGLIIERGFGLGLEV 178

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
            NA++ ++V C  L     VFDE   +++VSW S+I G V+  FP+E + LF D+Q   +
Sbjct: 179 SNALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGI 238

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236
           EPD + +  ++SA A    L+ GR +  YI    +   + +  A++DMY KCG +E A +
Sbjct: 239 EPDGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQ 298

Query: 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEA 296
           IF+ M +K V++                               WNA++ G       ++A
Sbjct: 299 IFNVMPHKNVLT-------------------------------WNAMLNGLAMHGHGQKA 327

Query: 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALV 354
           L LF EM   G++P+ VT +  L+AC   G + +G     +++ + +NL   L     +V
Sbjct: 328 LQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMV 387

Query: 355 DMYAKCGNIAKALQVFHEMP 374
           D+  + G + +AL++   MP
Sbjct: 388 DLLCRAGLLDEALELTKAMP 407



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   I G ++    +E ++L+   +++ G  PD      +    AS G    G  +  +
Sbjct: 209 SWTSIICGMVQCKFPKEVLELFCD-VQSSGIEPDGIILTSVLSARASPGALDYGRLVREY 267

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +       D+ +  AV+ ++  CG + +A  +F+    +N+++WN+++NG    G  ++A
Sbjct: 268 IDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKA 327

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISES-GLTLTVPLANALM 222
           ++LF +M  E + P+EVT +  ++AC     +  GR   HW  S+   L   +     ++
Sbjct: 328 LQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMV 387

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-GFLDIARKIFDDLPE 274
           D+  + G L+ A E+  +M     V     ++   K  G +++ R+I D L E
Sbjct: 388 DLLCRAGLLDEALELTKAMPMLPDVRIMGALLSTCKANGNVELPREILDRLVE 440


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/461 (37%), Positives = 273/461 (59%), Gaps = 6/461 (1%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I  H L+ G      + +  + V  S   +  A  +F+ +   N++ +NS+I     S 
Sbjct: 27  QIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTIFNHTHHPNILLFNSIIKA--HSS 84

Query: 160 FP--REAIRLFRDMQL-ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           FP   ++   F  M++   + PD  T   ++ A + L D +LG+ +H +++  G     P
Sbjct: 85  FPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSP 144

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           +   L+++Y  CGK+E A ++FD M+++ VV    MI G+ K G L+I  K+F  + ++ 
Sbjct: 145 VEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRS 204

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           VV WN +I    Q K+  EA  +F EM   G +PD  T V  L  C++LG +D G WIH 
Sbjct: 205 VVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHS 264

Query: 337 FIEKENFNLNVV-LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395
           + + +     V+ +G +LVD Y KCGN+  A +VF+EM ++N +++ A+I GL L+GK  
Sbjct: 265 YADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGE 324

Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
             +  F +M   G+ P + TF+G+L+ C H G VD+GR+ F  M+  F+LSPKL+HY C+
Sbjct: 325 LGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCV 384

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLLGR G ++EA  LIR+MP+  +  +WGAL  ACR HG+  + E AA +L+ L+P +S
Sbjct: 385 VDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNS 444

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
           G YVLL+N+Y +   W E  KVR +M+  G++K PG S+++
Sbjct: 445 GNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPGQSALQ 485



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 179/425 (42%), Gaps = 70/425 (16%)

Query: 6   LISHGFAPSRLI--AFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREA 62
            + HG   S  I   F ++  S   + Y T I  +  +PN   +N  I+         ++
Sbjct: 32  FLRHGLHHSNQILSHFVSVCTSLHQIPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQS 91

Query: 63  VDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122
              +  M       PDNFT+P L K  + L    LG  +  HV  LGF     V   ++ 
Sbjct: 92  FHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLE 151

Query: 123 VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--------FPR------------ 162
           V+ +CG +  A  VFDE   R +V WN +INGF + G        F R            
Sbjct: 152 VYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLM 211

Query: 163 -----------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
                      EA  +FR+M  +  EPD+ T++ ++  CA+L D++ G  IH Y    GL
Sbjct: 212 ISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGL 271

Query: 212 TLTV-PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
              V  + N+L+D Y KCG LE+A ++F+ M  K VVS   MI G    G          
Sbjct: 272 LRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNG---------- 321

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                                + +  + LF +M   G+ P   T V  L+ C+  G +D 
Sbjct: 322 ---------------------KGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDK 360

Query: 331 GIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
           G  I   +  + F L+  L     +VD+  +CG++ +A  +   MP   N+  + A++  
Sbjct: 361 GREIFDSMTVK-FKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSA 419

Query: 388 LALHG 392
              HG
Sbjct: 420 CRTHG 424


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/632 (31%), Positives = 321/632 (50%), Gaps = 72/632 (11%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           +S NL     +  ++    + +W + I G+ +  + REA  L+ +M R+G   PD+ +  
Sbjct: 144 KSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHG-IDPDHVSLA 202

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            L              ++  HV+KLG+D  + V N+++  +     LGLA  +F++   R
Sbjct: 203 TLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPER 262

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIH 203
           + V++N+L+ G+ + GF REAI LF  MQ     P E T   +++A  QL+D+  G+++H
Sbjct: 263 DSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVH 322

Query: 204 WYISESGLTLTVPLA-------------------------------NALMDMYVKCGKLE 232
            ++ +      V +A                               N L+  Y   G+++
Sbjct: 323 GFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVK 382

Query: 233 SAEEIFDSMV-------------------------------NKTVVS--CTTMIVG---- 255
            + E+F  +                                ++T+V+   + ++VG    
Sbjct: 383 ESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLV 442

Query: 256 --YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
             YAK G    A +IF DL  +  VPW A+I  YVQ    ++ L LF EMQ   I  DA 
Sbjct: 443 DMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAA 502

Query: 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373
           T    + AC+ L +L  G  +H  I    +  NV  G+ALVDMYAKCG+I  ALQ+F EM
Sbjct: 503 TYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEM 562

Query: 374 PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433
           P RNS+++ A+I   A +G     +  F EM+  GL PD ++ L IL AC H GLV+EG 
Sbjct: 563 PVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGL 622

Query: 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL 493
           +YF  M+ I++L PK +HY+  +D+L R G  +EAE+L+  MP   D ++W ++  +C +
Sbjct: 623 QYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGI 682

Query: 494 HGNVSIGERAAMKLLELDP-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
           H N  + ++AA +L  +   +D+  YV ++N+Y  +  W+  GKV+K M ERGV+K P  
Sbjct: 683 HKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAY 742

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           S +E+    + F   DK+HP++ +I   L +L
Sbjct: 743 SWVEIKHKTHVFTANDKTHPQMREIMKKLDEL 774



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 205/448 (45%), Gaps = 73/448 (16%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           NPN++  N  ++ FL+ G +  A  L+ +M                              
Sbjct: 98  NPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHK--------------------------- 130

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
                        +++  N +I  ++  G+L  A  +FD    R  V+W  LI G+ ++ 
Sbjct: 131 -------------NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNN 177

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
             REA  LF +M    ++PD V++  ++S   + + +N  R++H ++ + G   T+ ++N
Sbjct: 178 QFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSN 237

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+D Y                       C T  +G        +A ++F+D+PE+  V 
Sbjct: 238 SLLDSY-----------------------CKTRSLG--------LAFQLFNDIPERDSVT 266

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           +NA++ GY +   ++EA+ LF +MQ  G +P   T    L+A  QL  ++ G  +H F+ 
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           K NF  NV +  AL+D Y+K   + +A ++F+EMPE + ++Y  ++   A +G+  +++ 
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLE 386

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            F E+   G       F  +LS       +D GR+  +Q      +S  L   S +VD+ 
Sbjct: 387 LFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS-LVDMY 445

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + G   EA ++   + + +  V W A+
Sbjct: 446 AKCGEFGEANRIFSDLAIQSS-VPWTAM 472



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 125/217 (57%)

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           I ++G       +N L+  +++ G L  A ++FD M +K + S  TMI+GY K G L  A
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
           R +FD + ++  V W  +IGGY Q  + +EA  LF EM   GI PD V+    LS  ++ 
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
            ++++   +H  + K  ++  +V+  +L+D Y K  ++  A Q+F+++PER+S+T+ A++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
            G +  G   +AI+ F +M  VG  P E TF  IL+A
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/553 (32%), Positives = 302/553 (54%), Gaps = 32/553 (5%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +   ++ P+   W+  I    + G+  E++ L+  ++R G T P+ +T   L     + G
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G  I   V K GF+ D+ V NA++ +++  G +     +++    R+L+SWN+ ++
Sbjct: 430 NLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLS 489

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G    G     + +F  M  E   P+  T I ++ +C+ L D++ GR++H +I       
Sbjct: 490 GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI------- 542

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              + N L D                   N  V  CT +I  YAK  +L+ A   F+ L 
Sbjct: 543 ---IKNQLDD-------------------NNFV--CTALIDMYAKCMYLEDADVAFNRLS 578

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + +  W  II  Y Q  + ++AL  F +MQ  G+KP+  T   CLS CS L +L+ G  
Sbjct: 579 VRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ 638

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  + K     ++ +G+ALVDMYAKCG + +A  +F  +  R+++ +  II G A +G+
Sbjct: 639 LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQ 698

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
              A++ F  M+  G+ PD +TF GILSAC H GLV+EG+++F  M   F +SP + H +
Sbjct: 699 GNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCA 758

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CMVD+LGR G  +E E  I+ M ++ + ++W  +  A ++H N+ +GE+AA KL EL P+
Sbjct: 759 CMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPE 818

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           +   Y+LL+N++     W++  +VR +M  +GV+K PGCS +E NG ++ F+  D SHP+
Sbjct: 819 EESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQ 878

Query: 574 LEQIYDCLVQLTR 586
           +++I+  L +L R
Sbjct: 879 IQEIHLKLDELDR 891



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 219/476 (46%), Gaps = 41/476 (8%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   +L  + + +  SW   I+G +  G   +++ L+++M +N G  P+ FT     K C
Sbjct: 165 YARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM-QNEGIMPNEFTLATGLKAC 223

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           +      LG ++     KLG  +D++V +A++ ++  CG++ LA  +F     +N V+WN
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
            L+NG+ + G     ++LF  M    V+ +E T+  ++  CA  ++L  G+ IH  I + 
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G      +   L+DMY KCG    A                   +G            +F
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDA-------------------IG------------VF 372

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
             + +  +V W+A+I    Q  +S+E++ LFH M+     P+  T    LSA +  G L 
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  IH  + K  F  +V +  ALV MY K G +    +++  M +R+ +++ A + GL 
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             G     ++ F  M+  G +P+  TF+ IL +C     V  GR+  A    I +     
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAH---IIKNQLDD 549

Query: 450 KHYSC--MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++ C  ++D+  +   LE+A+     + +  D+  W  +      +   + GE+A
Sbjct: 550 NNFVCTALIDMYAKCMYLEDADVAFNRLSV-RDLFTWTVIITN---YAQTNQGEKA 601



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 192/405 (47%), Gaps = 33/405 (8%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           Y  + + CAS     +   I G ++K   + D ++  ++++V+  C     A  V  +  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            R++VSW +LI G V  GF  ++I LF++MQ E + P+E T+   + AC+    L+LG++
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H    + GL L + + +AL+D+Y KCG++E A ++F  M  +  V+   ++ GYA+ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG- 293

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            D+                                L LF  M    +K +  T    L  
Sbjct: 294 -DVTG-----------------------------VLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+    L  G  IH  I K  +  N  +G  LVDMY+KCG    A+ VF  + + + + +
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           +A+I  L   G++ ++I  F  M     +P++ T   +LSA  + G +  G+   A +  
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
            +     +   + +V +  ++G + +  +L  SM +  D++ W A
Sbjct: 444 -YGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNA 486



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 8/284 (2%)

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           +++  YAK  +   AR +   +P++ VV W A+I G V    + +++ LF EMQ  GI P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +  T    L ACS   ALD G  +H    K    L++ +G+ALVD+YAKCG I  A ++F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             MPE+N +T+  ++ G A  G     +  F  M+ + +  +E T   +L  C +   + 
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331

Query: 431 EGRKYFAQMSSIFRLSPKLKHY-SC-MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +G+      S I +   +   +  C +VD+  + GL  +A  + +++    D+VVW AL 
Sbjct: 332 QGQ---VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387

Query: 489 FACRLHGNV--SIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
                 G    SI     M+L +  P    I  LL+      N+
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/470 (36%), Positives = 273/470 (58%), Gaps = 14/470 (2%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           ++   +++ G   D ++ +  + +  S  +     +VF+     + V WN+ I G+  + 
Sbjct: 91  QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENY 150

Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
                + LF  M+     PD+ T   ++ AC+++  +  G   H      G+   V +  
Sbjct: 151 SVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMT 210

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           +L+D+Y KCG++  A ++FD M  + VVS T MI GYA F  L  ARK+FD++PEK  V 
Sbjct: 211 SLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVS 270

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQ-------------ATGIKPDAVTTVHCLSACSQLG 326
           WNAII GYV+    + A  +F EM              +  +KPD    V  +SACSQ+G
Sbjct: 271 WNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMG 330

Query: 327 ALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
           +L+   W+  ++ K + +++   +  AL+DM AKCG++ +A ++F EMP+R+ ++Y +++
Sbjct: 331 SLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMM 390

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
            GL++HG    A+S FS M+  GL PD++ F  IL+AC   GLVDEG  YF  M + + +
Sbjct: 391 QGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSI 450

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
            P   HY+CMVDLLGR+G L+EA +L++SMP+      WGAL  AC+LH ++ +GE  A 
Sbjct: 451 VPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVAD 510

Query: 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           +L EL+PQ++G YVLL+N+Y  +  W +   +R  M ERG+ K PGCS I
Sbjct: 511 QLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 193/437 (44%), Gaps = 87/437 (19%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           GL    F  S+ +  C  +   N  Y T +   V +P++  WN  I+G+ E   +   V 
Sbjct: 100 GLHQDHFIISQFLTLC--NSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVS 157

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
           L+ +M R+    PD FTYP L K C+ +     G    G  ++ G   D++V  ++I ++
Sbjct: 158 LFIRMKRSDAV-PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLY 216

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSL-------------------------------IN 153
             CG++  A  VFDE   RN+VSW ++                               I+
Sbjct: 217 GKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIIS 276

Query: 154 GFVRSGFPREAIRLFRDMQLE-------------RVEPDEVTMIGMVSACAQLEDLNLGR 200
           G+V+ G  R A ++F +M                 V+PDE  M+ ++SAC+Q+  L L +
Sbjct: 277 GYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAK 336

Query: 201 EIHWYISESGLTL-TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
            +  Y+ +S + +    +  AL+DM  KCG ++ A ++F+ M  + ++S  +M+ G +  
Sbjct: 337 WVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIH 396

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL 319
           G                                  +A++LF  M   G+ PD V     L
Sbjct: 397 GC-------------------------------GPQAVSLFSRMLNEGLTPDDVAFTVIL 425

Query: 320 SACSQLGALDDGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKALQVFHEMP- 374
           +ACS+ G +D+G +   + E    + ++V        +VD+  + G + +A ++   MP 
Sbjct: 426 TACSRAGLVDEGCY---YFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPV 482

Query: 375 ERNSLTYTAIIGGLALH 391
           E ++  + A++G   LH
Sbjct: 483 EPHAGAWGALLGACKLH 499


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/553 (32%), Positives = 302/553 (54%), Gaps = 32/553 (5%)

Query: 34  ILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           +   ++ P+   W+  I    + G+  E++ L+  ++R G T P+ +T   L     + G
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
               G  I   V K GF+ D+ V NA++ +++  G +     +++    R+L+SWN+ ++
Sbjct: 430 NLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLS 489

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           G    G     + +F  M  E   P+  T I ++ +C+ L D++ GR++H +I       
Sbjct: 490 GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI------- 542

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
              + N L D                   N  V  CT +I  YAK  +L+ A   F+ L 
Sbjct: 543 ---IKNQLDD-------------------NNFV--CTALIDMYAKCMYLEDADVAFNRLS 578

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
            + +  W  II  Y Q  + ++AL  F +MQ  G+KP+  T   CLS CS L +L+ G  
Sbjct: 579 VRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ 638

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H  + K     ++ +G+ALVDMYAKCG + +A  +F  +  R+++ +  II G A +G+
Sbjct: 639 LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQ 698

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
              A++ F  M+  G+ PD +TF GILSAC H GLV+EG+++F  M   F +SP + H +
Sbjct: 699 GNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCA 758

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           CMVD+LGR G  +E E  I+ M ++ + ++W  +  A ++H N+ +GE+AA KL EL P+
Sbjct: 759 CMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPE 818

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPE 573
           +   Y+LL+N++     W++  +VR +M  +GV+K PGCS +E NG ++ F+  D SHP+
Sbjct: 819 EESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQ 878

Query: 574 LEQIYDCLVQLTR 586
           +++I+  L +L R
Sbjct: 879 IQEIHLKLDELDR 891



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 219/476 (46%), Gaps = 41/476 (8%)

Query: 30  YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           Y   +L  + + +  SW   I+G +  G   +++ L+++M +N G  P+ FT     K C
Sbjct: 165 YARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM-QNEGIMPNEFTLATGLKAC 223

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
           +      LG ++     KLG  +D++V +A++ ++  CG++ LA  +F     +N V+WN
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 150 SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
            L+NG+ + G     ++LF  M    V+ +E T+  ++  CA  ++L  G+ IH  I + 
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
           G      +   L+DMY KCG    A                   +G            +F
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDA-------------------IG------------VF 372

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
             + +  +V W+A+I    Q  +S+E++ LFH M+     P+  T    LSA +  G L 
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
            G  IH  + K  F  +V +  ALV MY K G +    +++  M +R+ +++ A + GL 
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             G     ++ F  M+  G +P+  TF+ IL +C     V  GR+  A    I +     
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAH---IIKNQLDD 549

Query: 450 KHYSC--MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++ C  ++D+  +   LE+A+     + +  D+  W  +      +   + GE+A
Sbjct: 550 NNFVCTALIDMYAKCMYLEDADVAFNRLSV-RDLFTWTVIITN---YAQTNQGEKA 601



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 192/405 (47%), Gaps = 33/405 (8%)

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
           Y  + + CAS     +   I G ++K   + D ++  ++++V+  C     A  V  +  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            R++VSW +LI G V  GF  ++I LF++MQ E + P+E T+   + AC+    L+LG++
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H    + GL L + + +AL+D+Y KCG++E A ++F  M  +  V+   ++ GYA+ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG- 293

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            D+                                L LF  M    +K +  T    L  
Sbjct: 294 -DVTG-----------------------------VLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+    L  G  IH  I K  +  N  +G  LVDMY+KCG    A+ VF  + + + + +
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           +A+I  L   G++ ++I  F  M     +P++ T   +LSA  + G +  G+   A +  
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA 486
            +     +   + +V +  ++G + +  +L  SM +  D++ W A
Sbjct: 444 -YGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNA 486



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 8/284 (2%)

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
           +++  YAK  +   AR +   +P++ VV W A+I G V    + +++ LF EMQ  GI P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +  T    L ACS   ALD G  +H    K    L++ +G+ALVD+YAKCG I  A ++F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             MPE+N +T+  ++ G A  G     +  F  M+ + +  +E T   +L  C +   + 
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331

Query: 431 EGRKYFAQMSSIFRLSPKLKHY-SC-MVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALF 488
           +G+      S I +   +   +  C +VD+  + GL  +A  + +++    D+VVW AL 
Sbjct: 332 QGQ---VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387

Query: 489 FACRLHGNV--SIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530
                 G    SI     M+L +  P    I  LL+      N+
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 299/563 (53%), Gaps = 22/563 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K    +   N ++W+  I    + G++ +A  +Y++              PL  K
Sbjct: 275 LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQR-------------DPL--K 319

Query: 88  VCASLGLRFLGYEIFGHV--LKLGFD----VDMYVHNAVIHVFVSCGDLGLACNVFDESC 141
              S      G   +G +   K+ FD     ++   NA+I  ++    +  A ++F+   
Sbjct: 320 SVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMP 379

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE 201
            RN +SW  +I G+ R+G   +A+   + +  + + P   ++     AC+ +E L  G++
Sbjct: 380 FRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQ 439

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           +H    ++G      + NAL+ +Y K   + S  +IFD M  K  VS  + +    +   
Sbjct: 440 VHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNL 499

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            D AR +F+++P   VV W  II    QA +  EA+ +F  M      P+       L  
Sbjct: 500 FDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGL 559

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
              LGA   G  IH    K   +  +V+  ALV MY KC + A +L+VF  M ER+  T+
Sbjct: 560 SGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTW 618

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
             II G A HG   +AI  +  M+  G++P+E+TF+G+L AC H GLVDEG ++F  MSS
Sbjct: 619 NTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSS 678

Query: 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
            + L+P L+HY+CMVDLLGR+G ++ AE  I  MP+  D V+W AL  AC++H NV IG 
Sbjct: 679 DYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGR 738

Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLL 561
           RAA KL  ++P ++G YV+L+N+Y    MW+E  KVRK+M+ERGV K PGCS +++   +
Sbjct: 739 RAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKM 798

Query: 562 YEFIVRDKSHPELEQIYDCLVQL 584
           + F+  D+ H +++ IY  L +L
Sbjct: 799 HSFVTGDEEHEQIQNIYATLWEL 821



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 171/374 (45%), Gaps = 19/374 (5%)

Query: 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
             +A I      G L  A  VFD    R++++WNS+I  +  +G P     L   +    
Sbjct: 35  AQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGN 94

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           +    + + G   A          R+        G+  TV   NA++  YV+ G +  A 
Sbjct: 95  LRTGTILLSGYARA-------GRVRDARRVFDGMGVRNTVAW-NAMVTCYVQNGDITLAR 146

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           ++FD+M ++ V S  TM+ GY     ++ AR +F+ +PE+  V W  +I GYV  ++   
Sbjct: 147 KLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           A  +F  M   G+ P+    V  LSA   LG       IH  + K  F  +VV+GTA+++
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILN 266

Query: 356 MYAKCGN-IAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
            Y K  N +  A++ F  M  RN  T++ II  L+  G+  DA + + +   +  +P   
Sbjct: 267 GYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY-QRDPLKSVPSRT 325

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           +   +L+     G +D+ +  F Q+       P +  ++ M+    ++ +++EAE L   
Sbjct: 326 S---MLTGLARYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNR 377

Query: 475 MPMAADVVVWGALF 488
           MP   + + W  + 
Sbjct: 378 MPF-RNTISWAGMI 390



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 191/450 (42%), Gaps = 111/450 (24%)

Query: 13  PSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQM-- 69
           PSR      ++    +D   KILF+ +  PN  SWN  I G+++   + EA DL+ +M  
Sbjct: 322 PSRTSMLTGLARYGRIDDA-KILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPF 380

Query: 70  -------------LRNGGTRPDNFTYPLL---------------FKVCASLGLRFLGYEI 101
                         RNG +     +   L               F  C+++     G ++
Sbjct: 381 RNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQV 440

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
               +K G   + YV NA+I ++     +G    +FD   V++ VS+NS ++  V++   
Sbjct: 441 HSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLF 500

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN------------------------ 197
            EA  +F +M      PD V+   ++SACAQ +  N                        
Sbjct: 501 DEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTIL 556

Query: 198 -----------LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV 246
                      LG++IH    + G+   + +ANAL+ MY KC   +S  ++FDSM  + +
Sbjct: 557 LGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSL-KVFDSMEERDI 615

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            +  T+I GYA+ G                                 +EA+ ++  M + 
Sbjct: 616 FTWNTIITGYAQHGL-------------------------------GREAIRMYQLMVSA 644

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE--KENFNLNVVLG--TALVDMYAKCGN 362
           G+ P+ VT V  L ACS  G +D+G   H+F +    ++ L  +L     +VD+  + G+
Sbjct: 645 GVLPNEVTFVGLLHACSHSGLVDEG---HQFFKSMSSDYGLTPLLEHYACMVDLLGRAGD 701

Query: 363 IAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           +  A    ++MP E +S+ ++A++G   +H
Sbjct: 702 VQGAEHFIYDMPIEPDSVIWSALLGACKIH 731



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/486 (22%), Positives = 200/486 (41%), Gaps = 61/486 (12%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           L  +C    S+ ++    +   +   N  SW V I G++   +   A D+++ ML  G T
Sbjct: 164 LTGYC---HSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT 220

Query: 76  RPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS-CGDLGLAC 134
            P+      +      LG   +   I   V K GF+ D+ V  A+++ +      L  A 
Sbjct: 221 -PEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAV 279

Query: 135 NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194
             F+    RN  +W+++I    ++G   +A  +++   L+                    
Sbjct: 280 KFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLK-------------------- 319

Query: 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIV 254
                              +VP   +++    + G+++ A+ +FD +    VVS   MI 
Sbjct: 320 -------------------SVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMIT 360

Query: 255 GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
           GY +   +D A  +F+ +P +  + W  +I GY +  RS++AL     +   G+ P   +
Sbjct: 361 GYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSS 420

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
                 ACS + AL+ G  +H    K     N  +  AL+ +Y K  +I    Q+F  M 
Sbjct: 421 LTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMT 480

Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
            +++++Y + +  L  +    +A   F+ M      PD +++  I+SAC      +E  +
Sbjct: 481 VKDTVSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVE 536

Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL------EEAEQLIRSMPMAADVVVWGAL- 487
            F  M        +L +   +  LLG SG L      ++   +   + M + +VV  AL 
Sbjct: 537 IFRSMLH----ERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALV 592

Query: 488 --FFAC 491
             +F C
Sbjct: 593 SMYFKC 598


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 309/564 (54%), Gaps = 34/564 (6%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           I GF+     ++A  ++++ML     RP+  T   + K C   G   L   + G  +K  
Sbjct: 218 ISGFVRNELHKDAFTVFRKML-TCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCN 276

Query: 110 -FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV------------ 156
            F+  + VHN++I +++  GD   A  VFD+  VR++VSW +L++ +             
Sbjct: 277 LFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVL 336

Query: 157 -------------------RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
                              + G   EA++L+  M  +   P+      ++SACA L+DL 
Sbjct: 337 DAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLR 396

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G  IH    + G +  + ++++L+DMY KC +   A+ +F+S+  K  V   ++I GY+
Sbjct: 397 GGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYS 456

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
             G +  A  +F+ +P +  V WN +I GY + +R  +AL  F+ M A+G  P  +T   
Sbjct: 457 WNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSS 516

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L AC+ L +L+ G  +H  I K     N+ +GTAL DMYAK G++  + +VF++MPE+N
Sbjct: 517 VLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKN 576

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           ++T+TA++ GLA +G A ++IS F +MI  G+ P+E TFL IL AC H GLV++   YF 
Sbjct: 577 NITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFE 636

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M +   + PK KHY+CMVD+L R+G L EAE+L+  +    D   W +L  AC  + N 
Sbjct: 637 TMQA-HGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNK 695

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
            IGERAA KL EL+  ++  YVLL+NMY     W++A + R +M+   ++K  GCS +++
Sbjct: 696 EIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQL 755

Query: 558 NGLLYEFIVRDKSHPELEQIYDCL 581
            G  + F    + HP   +IY+ L
Sbjct: 756 RGQYHAFFSWKEKHPLSLEIYEIL 779



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 198/403 (49%), Gaps = 34/403 (8%)

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
           +  ++   +  G +  A  +++   + ++  + ++I+GFVR+   ++A  +FR M    V
Sbjct: 183 YTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSV 242

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAE 235
            P+ VT+I ++ AC    + +L   +     +  L   ++ + N+L+ +Y++ G   +A 
Sbjct: 243 RPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAR 302

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD M  + VVS T ++  YA  G LD AR++ D +P +  V W  +I  + Q   + E
Sbjct: 303 RVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAE 362

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL L+ +M A G +P+       LSAC+ L  L  G  IH    K   + N+ + ++L+D
Sbjct: 363 ALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLID 422

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL-------------------- 395
           MY KC     A +VF+ +PE+N++ + ++I G + +GK +                    
Sbjct: 423 MYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTM 482

Query: 396 -----------DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
                      DA++YF  M+  G +P EIT   +L AC +   ++ GR   A++  +  
Sbjct: 483 ISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKL-G 541

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +   +   + + D+  +SG L+ + ++   MP   + + W A+
Sbjct: 542 IEDNIFMGTALCDMYAKSGDLDSSRRVFYQMP-EKNNITWTAM 583



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 183/424 (43%), Gaps = 42/424 (9%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +LD   ++L  +   N  SW   I    + G   EA+ LY QML +G  RP+   +  + 
Sbjct: 328 DLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADG-CRPNISCFSSVL 386

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLV 146
             CA+L     G  I  + LK+G   +++V +++I ++  C     A  VF+    +N V
Sbjct: 387 SACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTV 446

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVE----------------------------- 177
            WNSLI+G+  +G   EA  LF  M                                   
Sbjct: 447 CWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASG 506

Query: 178 --PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
             P E+T+  ++ ACA L  L +GR +H  I + G+   + +  AL DMY K G L+S+ 
Sbjct: 507 HIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSR 566

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGYVQAK 291
            +F  M  K  ++ T M+ G A+ GF + +  +F+D+ E  + P    + AI+       
Sbjct: 567 RVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCG 626

Query: 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT 351
             ++A+  F  MQA GI P +      +   ++ G L +       + K +  L+    +
Sbjct: 627 LVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEA---EELLMKVSSELDTSSWS 683

Query: 352 ALVDMYAKCGNI---AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           +L+   +   N     +A +  HE+ + N+  Y  +    A  GK  DA      M G  
Sbjct: 684 SLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGAS 743

Query: 409 LMPD 412
           L  D
Sbjct: 744 LKKD 747



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 139/312 (44%), Gaps = 40/312 (12%)

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           +VK G + SA  +F  M  K+VVS TTM+    K G +  A ++++  P   V  + A+I
Sbjct: 159 HVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMI 218

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI---------- 334
            G+V+ +  K+A  +F +M    ++P+ VT +  + AC   G  D  + +          
Sbjct: 219 SGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLF 278

Query: 335 HRFIEKENFNL----------------------NVVLGTALVDMYAKCGNIAKALQVFHE 372
            + IE  N  +                      +VV  TAL+D+YA  G++  A +V   
Sbjct: 279 EKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDA 338

Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
           MP RN +++  +I      G   +A+  +S+M+  G  P+   F  +LSAC     +  G
Sbjct: 339 MPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGG 398

Query: 433 RKYFA---QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            +  A   +M S    S  L   S ++D+  +      A+++  S+P   + V W +L  
Sbjct: 399 TRIHANALKMGS----STNLFVSSSLIDMYCKCKQCTYAQRVFNSLP-EKNTVCWNSLIS 453

Query: 490 ACRLHGNVSIGE 501
               +G +   E
Sbjct: 454 GYSWNGKMVEAE 465



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 10/285 (3%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LFN +   NS SWN  I G+ E  +  +A++ +  ML +G   P   T   +   CA+L 
Sbjct: 467 LFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI-PGEITLSSVLLACANLC 525

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              +G  +   ++KLG + ++++  A+  ++   GDL  +  VF +   +N ++W +++ 
Sbjct: 526 SLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQ 585

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY--ISESGL 211
           G   +GF  E+I LF DM    + P+E T + ++ AC+    +   + IH++  +   G+
Sbjct: 586 GLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVE--QAIHYFETMQAHGI 643

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARK 267
                    ++D+  + G L  AEE+   + ++   S  + ++     Y      + A K
Sbjct: 644 PPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAK 703

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
              +L +     +  +   Y    + K+A      MQ   +K DA
Sbjct: 704 KLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDA 748



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 9/184 (4%)

Query: 18  AFCAI-SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           A C + ++S +LD   ++ + +   N+ +W   ++G  E G   E++ L++ M+ N G  
Sbjct: 551 ALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIEN-GIA 609

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P+  T+  +   C+  GL       F  +   G       +  ++ V    G L  A  +
Sbjct: 610 PNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEEL 669

Query: 137 FDE-SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE----VTMIGMVSACA 191
             + S   +  SW+SL++    S +  + I      +L  +E D     V +  M ++C 
Sbjct: 670 LMKVSSELDTSSWSSLLSAC--STYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCG 727

Query: 192 QLED 195
           + +D
Sbjct: 728 KWKD 731


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 303/559 (54%), Gaps = 15/559 (2%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWN-VAIRGFLETGKMRE 61
           LI+    PS  +A   IS    +  LD   ++   +  P+ F+WN + I   L +     
Sbjct: 40  LIALSVTPSNFLASKLISLYSRTGRLDDARRVFDAIPRPSVFAWNAILIALSLHSPDPSA 99

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF---LGYEIFGHVLKLGFDVDMYVHN 118
           AV  +       G  PD  T   L K  A  G R    +  E     ++ GF  D++V N
Sbjct: 100 AVRFFAA----SGISPDEITLSALLKSLAESGPRLSALVAAEFHAVAVQRGFGDDLFVSN 155

Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--- 175
            +I  + + GD   A  VFD+   R++VSWNSLI+ + R+G+ RE + LF+++       
Sbjct: 156 GLITAYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWYRECLELFQELASVHGAG 215

Query: 176 -VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
            V P+ VT+  ++ ACAQL+ ++ G  +H + +E+GL + V + N+ +  Y KCGKL+ A
Sbjct: 216 GVRPNSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYA 275

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            E+F+ M  K  VS + MI GY   G +D   ++F     + +  WNA+I G VQ  R  
Sbjct: 276 RELFERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQS 335

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           E L L +EM  +GI P++ T    + +      L      H +  + N++ ++ + TAL+
Sbjct: 336 EVLGLLNEMIGSGILPNSATLSIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALI 395

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           D Y+K G +  +L+VF    +R+ + +T+II  +A HG+A +A+  F+EM    + PD I
Sbjct: 396 DAYSKAGFLDGSLRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTI 455

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
            F  +L+AC + G V + RK F  M  +F ++P ++ Y+CMV    R+G+L++A +L+ S
Sbjct: 456 AFTAVLTACAYTGKVADARKVFNSMQVLFGINPVMEQYACMVSAFSRAGMLKDALELVNS 515

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MP   +  VWG L       G+V +G     +L  ++P+++G Y+++AN+Y ++  WEEA
Sbjct: 516 MPFEPNAKVWGPLLNGAAEFGDVELGRFVFDRLFIIEPKNTGNYIVMANLYSNAGKWEEA 575

Query: 535 GKVRKMMEERGVEKTPGCS 553
             +R MM   G+EK PGCS
Sbjct: 576 EIIRSMMWGVGLEKVPGCS 594



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 200/462 (43%), Gaps = 77/462 (16%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           PD   Y  L ++CA  G    G ++   ++ L      ++ + +I ++   G L  A  V
Sbjct: 12  PDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDDARRV 71

Query: 137 FDESCVRNLVSWNS-LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--- 192
           FD     ++ +WN+ LI   + S  P  A+R F       + PDE+T+  ++ + A+   
Sbjct: 72  FDAIPRPSVFAWNAILIALSLHSPDPSAAVRFF---AASGISPDEITLSALLKSLAESGP 128

Query: 193 -LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
            L  L +  E H    + G    + ++N L+  Y   G   SA  +FD M  + VVS  +
Sbjct: 129 RLSAL-VAAEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWNS 187

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ----ATG 307
           +I  YA+ G+                                +E L LF E+     A G
Sbjct: 188 LISAYARAGWY-------------------------------RECLELFQELASVHGAGG 216

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++P++VT    L AC+QL A+D G+ +HRF  +   +++V +  + V  YAKCG +  A 
Sbjct: 217 VRPNSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYAR 276

Query: 368 QVFHEMPERNSLTYT-------------------------------AIIGGLALHGKALD 396
           ++F  MP++++++Y+                               A+I GL  +G+  +
Sbjct: 277 ELFERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSE 336

Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
            +   +EMIG G++P+  T L I+    H      G K     +        +   + ++
Sbjct: 337 VLGLLNEMIGSGILPNSAT-LSIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALI 395

Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           D   ++G L+ + ++ +S    +  +VW ++  A   HG  +
Sbjct: 396 DAYSKAGFLDGSLRVFKSTGDRSK-IVWTSIISAVAAHGEAA 436


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 325/665 (48%), Gaps = 97/665 (14%)

Query: 17  IAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           IA    ++   LD   ++   +      SWN  I  + + G+  EA+ L   M R+    
Sbjct: 37  IAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKL 96

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA--- 133
            ++ T+  +  VCA L     G  I   VLK G +    V +A+++ + SC ++G A   
Sbjct: 97  SES-TFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRV 155

Query: 134 ---------------------CNVFDESCV-------RNLVSWNSLINGFVRSGFP-REA 164
                                CNV D++         R++V+W +LI+GF ++G    +A
Sbjct: 156 FDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKA 215

Query: 165 IRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           + +FR M       P+E T   +V AC +L  L++GR +H  + + GL     +  AL++
Sbjct: 216 LEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVE 275

Query: 224 MYVKC-------------------------------GKLESAEEIFDSMVNKTVVSCTTM 252
            Y +C                               G++E AE +F+ M     VS   M
Sbjct: 276 FYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLM 335

Query: 253 IVGYAKFGFLDIARKIFDDLP--------------------------------EKYVVPW 280
           I GYA  G +D ++++F+ +P                                EK  V W
Sbjct: 336 IKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTW 395

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N++I GY+ + + +EAL L+  M    I+    T      ACS LG+L  G  +H  + K
Sbjct: 396 NSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIK 455

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F  NV +GT+L+DMY+KCG+I +A   F  +   N   +TA+I G A HG   +AIS 
Sbjct: 456 TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISL 515

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  MI  GL P+  TF+G+LSAC   GLV+EG K F  M   + ++P L+HY+C+VDLLG
Sbjct: 516 FDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLG 575

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           RSG + EAE+ I+ MP+ AD VVWGAL  AC    ++ +GER A K+   DP+    YV+
Sbjct: 576 RSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVI 635

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N+Y     W E   VRK++    V+K PGCS IE+N  ++ F + D+SHP    IY  
Sbjct: 636 LSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYAT 695

Query: 581 LVQLT 585
           L  LT
Sbjct: 696 LEHLT 700



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 19/376 (5%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N  I  +     L +A  +FD+   R +VSWN++I+ + + G   EA+ L   M    ++
Sbjct: 36  NIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMK 95

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
             E T   ++S CA+L  L  G+ IH  + +SG      + +AL+  Y  C ++  A  +
Sbjct: 96  LSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRV 155

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ-AKRSKEA 296
           FD +V +  V  + M+VGY     +D A  +F  +P + VV W  +I G+ +      +A
Sbjct: 156 FDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKA 215

Query: 297 LALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           L +F  M  +G   P+  T    + AC +LG L  G  +H  + K     +  +G ALV+
Sbjct: 216 LEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVE 275

Query: 356 MYAKCGNIAKALQVFHEM--PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
            Y +C  I  AL+V   +  P  N+L   ++I GL   G+  DA   F+ M  +    + 
Sbjct: 276 FYCECEAIDDALRVCKGVVNPCLNAL--NSLIEGLISMGRIEDAELVFNGMTEM----NP 329

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMS--SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           +++  ++     GG +D+ ++ F +M   +IF         + M+ +  R+G +++A +L
Sbjct: 330 VSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFS-------SNTMISVYSRNGEIDKALEL 382

Query: 472 IRSMPMAADVVVWGAL 487
                   D V W ++
Sbjct: 383 FEETKNEKDPVTWNSM 398



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 33/221 (14%)

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           ++S    I  YAK   LD+AR++FD +P++ VV WN +I  Y +  R  EAL L + M  
Sbjct: 32  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 91

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           + +K    T    LS C++L  L DG  IH  + K       ++G+AL+  YA C  I +
Sbjct: 92  SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 151

Query: 366 -------------------------------ALQVFHEMPERNSLTYTAIIGGLALHGKA 394
                                          AL VF +MP R+ + +T +I G + +G  
Sbjct: 152 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 211

Query: 395 L-DAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGR 433
              A+  F  M+  G   P+E TF  ++ AC   G++  GR
Sbjct: 212 CGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGR 252


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 294/552 (53%), Gaps = 65/552 (11%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           +E ++    + R GG  P     PL+ K CA       G +   H L  G   D++V  A
Sbjct: 60  QELIEAVSSLHRRGGAIPSG-CIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTA 118

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-----------FPR------ 162
           ++  +   G++  A   F+E  +++ +  N LI G+ RSG            PR      
Sbjct: 119 LVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASW 178

Query: 163 --------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                         EA+ LF  M  E   P+ +T+  + S CA+  DL  GR    ++SE
Sbjct: 179 NSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSE 238

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L   V +  ALM+MYVKC  +                               D AR+ 
Sbjct: 239 EDLQ-NVIVHTALMEMYVKCRAI-------------------------------DEARRE 266

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD +P + VV W+ +I GY    R  E+L LF  M+AT  KP+ VT V  LSAC+QLG+ 
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G  I  +IE +   L   LG+AL+DMY KCG++A+A  VFH M ++  + + ++I GL
Sbjct: 327 ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGL 386

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSP 447
           AL+G A DAI+ + EM+G G+ P+EITFL +L+AC H GLVD+G  +F +M    +  SP
Sbjct: 387 ALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASP 446

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           +++H +C+VDLL +SG L EA + I  M +  + V+W  L  ACR H +V + + AA KL
Sbjct: 447 QVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKL 506

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           + L+P  S IYVLL+N+Y D+ +W +  ++R +M  + ++K    S IE++G ++ F+V+
Sbjct: 507 VVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQ 566

Query: 568 DKSHPELEQIYD 579
           D  HP   +IY+
Sbjct: 567 DTYHPRSAEIYN 578



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 189/373 (50%), Gaps = 36/373 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S S +++   ++  ++    S SWN  I  +   G+ +EA+ L+ QMLR G + P+  T 
Sbjct: 155 SRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS-PNAITI 213

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F +CA  G    G      V +     ++ VH A++ ++V C  +  A   FD    
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPR 272

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++V+W+++I G+  +G P E++ LF  M+    +P+EVT++G++SACAQL    LG +I
Sbjct: 273 RDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQI 332

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
             YI    L LT  L +AL+DMY KCG +  A ++F  M  K V++  +MI G A  GF 
Sbjct: 333 GSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGF- 391

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                         +++A+AL+ EM   G++P+ +T +  L+AC
Sbjct: 392 ------------------------------AEDAIALYGEMVGDGVQPNEITFLALLTAC 421

Query: 323 SQLGALDDGIWIHRFIE--KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSL 379
           +  G +D G+   + ++  K++ +  V     +VD+  K G + +A +   +M  E N++
Sbjct: 422 THAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAV 481

Query: 380 TYTAIIGGLALHG 392
            +T ++     H 
Sbjct: 482 IWTTLLSACRAHA 494


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 309/564 (54%), Gaps = 34/564 (6%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           I GF+     ++A  ++++ML     RP+  T   + K C   G   L   + G  +K  
Sbjct: 218 ISGFVRNELHKDAFPVFRKML-TCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCN 276

Query: 110 -FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV------------ 156
            F+  + VHN++I +++  GD   A  VFD+  VR++VSW +L++ +             
Sbjct: 277 LFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVL 336

Query: 157 -------------------RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197
                              + G   EA++L+  M  +   P+      ++SACA L+DL 
Sbjct: 337 DAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLR 396

Query: 198 LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYA 257
            G  IH    + G +  + ++++L+DMY KC +   A+ +F+S+  K  V   ++I GY+
Sbjct: 397 GGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYS 456

Query: 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
             G +  A  +F+ +P +  V WN +I GY + +R  +AL  F+ M A+G  P  +T   
Sbjct: 457 WNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSS 516

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
            L AC+ L +L+ G  +H  I K     N+ +GTAL DMYAK G++  + +VF++MPE+N
Sbjct: 517 VLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKN 576

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           ++T+TA++ GLA +G A ++IS F +MI  G+ P+E TFL IL AC H GLV++   YF 
Sbjct: 577 NITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFE 636

Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
            M +   + PK KHY+CMVD+L R+G L EAE+L+  +    D   W +L  AC  + N 
Sbjct: 637 TMQA-HGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNK 695

Query: 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEV 557
            IGERAA KL EL+  ++  YVLL+NMY     W++A + R +M+   ++K  GCS +++
Sbjct: 696 EIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQL 755

Query: 558 NGLLYEFIVRDKSHPELEQIYDCL 581
            G  + F    + HP   +IY+ L
Sbjct: 756 RGQYHAFFSWKEKHPLSLEIYEIL 779



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 197/403 (48%), Gaps = 34/403 (8%)

Query: 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
           +  ++   +  G +  A  +++   + ++  + ++I+GFVR+   ++A  +FR M    V
Sbjct: 183 YTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSV 242

Query: 177 EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAE 235
            P+ VT+I ++ AC    + +L   +     +  L   ++ + N+L+ +Y++ G   +A 
Sbjct: 243 RPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAH 302

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
            +FD M  + VVS T ++  YA  G L  AR++ D +P +  V W  +I  + Q   + E
Sbjct: 303 RVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAE 362

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           AL L+ +M A G +P+       LSAC+ L  L  G  IH    K   + N+ + ++L+D
Sbjct: 363 ALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLID 422

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL-------------------- 395
           MY KC     A +VF+ +PE+N++ + ++I G + +GK +                    
Sbjct: 423 MYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTM 482

Query: 396 -----------DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
                      DA++YF  M+  G +P EIT   +L AC +   ++ GR   A++  +  
Sbjct: 483 ISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKL-G 541

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
           +   +   + + D+  +SG L+ + ++   MP   + + W A+
Sbjct: 542 IEDNIFMGTALSDMYAKSGDLDSSRRVFYQMP-EKNNITWTAM 583



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 180/418 (43%), Gaps = 42/418 (10%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           ++L  +   N  SW   I    + G   EA+ LY QML +G  RP+   +  +   CA+L
Sbjct: 334 RVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADG-CRPNISCFSSVLSACATL 392

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                G  I  + LK+G   +++V +++I ++  C     A  VF+    +N V WNSLI
Sbjct: 393 QDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLI 452

Query: 153 NGFVRSGFPREAIRLFRDMQLERVE-------------------------------PDEV 181
           +G+  +G   EA  LF  M                                     P E+
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 182 TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
           T+  ++ ACA L  L +GR +H  I + G+   + +  AL DMY K G L+S+  +F  M
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQM 572

Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGYVQAKRSKEAL 297
             K  ++ T M+ G A+ GF + +  +F+D+ E  + P    + AI+         ++A+
Sbjct: 573 PEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAI 632

Query: 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357
             F  MQA GI P +      +   ++ G L +       + K +  L+    ++L+   
Sbjct: 633 HYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEA---EELLMKVSSELDTSSWSSLLSAC 689

Query: 358 AKCGNI---AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
           +   N     +A +  HE+ + N+  Y  +    A  GK  DA      M G  L  D
Sbjct: 690 STYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKD 747



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 42/317 (13%)

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           ++  +VK G + SA  +F  M  K+VVS TTM+    K G +  A ++++  P   V  +
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD----------- 329
            A+I G+V+ +  K+A  +F +M    ++P+ VT +  + AC   G  D           
Sbjct: 215 TAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274

Query: 330 ----------------------DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
                                 D    HR  +      +VV  TAL+D+YA  G++  A 
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVR-DVVSWTALLDVYADLGDLYGAR 333

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
           +V   MP RN +++  +I      G   +A+  +S+M+  G  P+   F  +LSAC    
Sbjct: 334 RVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQ 393

Query: 428 LVDEGRKYFA---QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
            +  G +  A   +M S    S  L   S ++D+  +      A+++  S+P   + V W
Sbjct: 394 DLRGGTRIHANALKMGS----STNLFVSSSLIDMYCKCKQCTYAQRVFNSLP-EKNTVCW 448

Query: 485 GALFFACRLHGNVSIGE 501
            +L      +G +   E
Sbjct: 449 NSLISGYSWNGKMVEAE 465



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 10/285 (3%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LFN +   NS SWN  I G+ E  +  +A++ +  ML +G   P   T   +   CA+L 
Sbjct: 467 LFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI-PGEITLSSVLLACANLC 525

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              +G  +   ++KLG + ++++  A+  ++   GDL  +  VF +   +N ++W +++ 
Sbjct: 526 SLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQ 585

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY--ISESGL 211
           G   +GF  E+I LF DM    + P+E T + ++ AC+    +   + IH++  +   G+
Sbjct: 586 GLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVE--QAIHYFETMQAHGI 643

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG----YAKFGFLDIARK 267
                    ++D+  + G L  AEE+   + ++   S  + ++     Y      + A K
Sbjct: 644 PPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAK 703

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
              +L +     +  +   Y    + K+A      MQ   +K DA
Sbjct: 704 KLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDA 748



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 8/178 (4%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           ++S +LD   ++ + +   N+ +W   ++G  E G   E++ L++ M+ N G  P+  T+
Sbjct: 557 AKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIEN-GIAPNEHTF 615

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-SC 141
             +   C+  GL       F  +   G       +  ++ V    G L  A  +  + S 
Sbjct: 616 LAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSS 675

Query: 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE----VTMIGMVSACAQLED 195
             +  SW+SL++    S +  + I      +L  +E D     V +  M ++C + +D
Sbjct: 676 ELDTSSWSSLLSAC--STYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKD 731


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 305/543 (56%), Gaps = 21/543 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L Y  K+   + + N  S NV I GF   G  REA+  +KQ +  G  RP++ T   +  
Sbjct: 144 LSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQ-VGLGNFRPNSVTIASVLP 202

Query: 88  VCASLGLRFLGYEIFGHV----LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            CAS+       E+ G V    +KLG + D+YV  AV+ ++ +CG+L LA  VFD+   +
Sbjct: 203 ACASV-------ELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDK 255

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQLEDLNLGREI 202
           N+VS+N+ I+G +++G P     +F+D+     E P+ VT++ ++SAC++L  +  GR+I
Sbjct: 256 NVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQI 315

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV-NKTVVSCTTMIVGYAKFGF 261
           H  + +  +     +  AL+DMY KCG    A  IF  +  ++ +V+  +MI G    G 
Sbjct: 316 HGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQ 375

Query: 262 LDIARKIFDDLPEKYVVP----WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
            DIA ++F+ L  + + P    WN +I G+ Q  +  EA   FH+MQ+ G+     +   
Sbjct: 376 SDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITS 435

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF--HEMPE 375
            L ACS L AL  G  IH    + N + +  + TAL+DMY KCG+   A +VF   ++  
Sbjct: 436 LLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKP 495

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            +   + A+I G   +GK   A   F++M    + P+  T + ILS C H G +D G + 
Sbjct: 496 DDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQL 555

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M+  + L+P  +H+ CMVDLLGRSG L+EA++LI  MP  A V V+ +L  ACR H 
Sbjct: 556 FKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHHS 614

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           + ++GE  A KL EL+PQD   +V+L+N+Y     W +  +VR+MM +RG++K PGCSSI
Sbjct: 615 DSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSSI 674

Query: 556 EVN 558
            V 
Sbjct: 675 GVT 677



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 150/551 (27%), Positives = 259/551 (47%), Gaps = 53/551 (9%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           I   +  G  REA+ LY + L +       FT+P L K  A L     G  +   ++K G
Sbjct: 65  IAKLVSNGFYREALSLYSK-LHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTG 123

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
           F +D+Y   A+  +++    L  A  VF+E   RNL S N  I+GF R+G+ REA+  F+
Sbjct: 124 FHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFK 183

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            + L    P+ VT+  ++ ACA +E   L  ++H    + G+   + +A A++ MY  CG
Sbjct: 184 QVGLGNFRPNSVTIASVLPACASVE---LDGQVHCLAIKLGVESDIYVATAVVTMYSNCG 240

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
           +L  A+++FD +++K VVS    I G  + G   +   +F DL                 
Sbjct: 241 ELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDL----------------- 283

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
                        ++++G  P++VT V  LSACS+L  +  G  IH  + K   N + ++
Sbjct: 284 -------------LESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMV 330

Query: 350 GTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           GTALVDMY+KCG    A  +F E+   RN +T+ ++I G+ L+G++  A+  F ++   G
Sbjct: 331 GTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEG 390

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           L PD  T+  ++S     G V E  K+F +M S   ++  LK  + ++        L+  
Sbjct: 391 LEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIA-SLKSITSLLRACSALSALQSG 449

Query: 469 EQL----IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           +++    IR+  +  D  +  AL       G+  +  R   +  ++ P D   +  + + 
Sbjct: 450 KEIHGHTIRT-NIDTDEFISTALIDMYMKCGHSYLARRVFCQ-FQIKPDDPAFWNAMISG 507

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPG--------CS---SIEVNGLLYEFIVRDKSHPE 573
           Y  +  ++ A ++   M+E  V+            CS    I+    L++ + RD     
Sbjct: 508 YGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNP 567

Query: 574 LEQIYDCLVQL 584
             + + C+V L
Sbjct: 568 TSEHFGCMVDL 578



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 180/407 (44%), Gaps = 45/407 (11%)

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           +S    I   V +GF REA+ L+  +    V   + T   ++ A A+L     G+ +H  
Sbjct: 59  ISMKRDIAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQ 118

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           + ++G  L +  A AL DMY+K   L  A ++F+ M ++ + S    I G+++ G+    
Sbjct: 119 LIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYF--- 175

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                       +EAL  F ++     +P++VT    L AC+ +
Sbjct: 176 ----------------------------REALGAFKQVGLGNFRPNSVTIASVLPACASV 207

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
               DG  +H    K     ++ + TA+V MY+ CG +  A +VF ++ ++N ++Y A I
Sbjct: 208 EL--DG-QVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFI 264

Query: 386 GGLALHGKALDAISYFSEMI-GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
            GL  +G        F +++   G +P+ +T + ILSAC     +  GR+    +  I  
Sbjct: 265 SGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKI-E 323

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           ++      + +VD+  + G    A  +   +  + ++V W ++     L+G   I    A
Sbjct: 324 INFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDI----A 379

Query: 505 MKLLE-LDPQ----DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
           ++L E L+P+    DS  +  + + +       EA K    M+  GV
Sbjct: 380 VELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGV 426


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 287/540 (53%), Gaps = 33/540 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I GF       +++ ++  ML + G   D+ T   +    A L    LG  I    
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDML-DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLA 240

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            K G   D+YV   +I ++  CG       +FD+    +L+S+N++I+G+  +     A+
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAV 300

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LFR++       +  T++G++        L L R I     + G+ L   ++ AL  +Y
Sbjct: 301 TLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            +  +++                                AR++FD+ PEK +  WNA+I 
Sbjct: 361 CRLNEVQ-------------------------------FARQLFDESPEKSLASWNAMIS 389

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY Q   +  A++LF EM    + P+ VT    LSAC+QLGAL  G W+H  I+ E    
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           NV + TALVDMYAKCG+I +A Q+F  M ++N +T+ A+I G  LHG   +A+  F EM+
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ P  +TFL IL AC H GLV EG + F  M++ +   P  +HY+CMVD+LGR+G L
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQL 568

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
             A + I  MP+     VWGAL  AC +H N  +   A+ +L +LDP++ G YVLL+N+Y
Sbjct: 569 TNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIY 628

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
                + +A  VR+++++R + KTPGC+ IE++   Y F   D+SHP+   I++ L +LT
Sbjct: 629 STDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLT 688



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 223/467 (47%), Gaps = 43/467 (9%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LFN V  P+ F +NV IRGF + G  + ++ LY  + +    RPDNFTY       + L 
Sbjct: 68  LFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLE 127

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              +G  +  H +  G   +++V +A++ ++       LA  VFD    R+ V WN++I+
Sbjct: 128 DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMIS 187

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           GF R+ +  ++IR+F DM    +  D  T+  +++A A+L++  LG  I    S+ GL  
Sbjct: 188 GFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS 247

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            V +   L+ +Y KCGK                 SC   I+              FD + 
Sbjct: 248 DVYVLTGLISLYSKCGK-----------------SCKGRIL--------------FDQID 276

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           +  ++ +NA+I GY     ++ A+ LF E+ A+G + ++ T V  +        L     
Sbjct: 277 QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQ---- 332

Query: 334 IHRFIEKENFNLNVVL----GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
           + R I+  +  + ++L     TAL  +Y +   +  A Q+F E PE++  ++ A+I G  
Sbjct: 333 LSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYT 392

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            +G    AIS F EM+   L P+ +T   ILSAC   G +  G+     + S  RL   +
Sbjct: 393 QNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLESNV 450

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
              + +VD+  + G + EA QL   M +  +VV W A+     LHG+
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGH 496



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/489 (22%), Positives = 212/489 (43%), Gaps = 81/489 (16%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   ++  G   D+     + H F   G +     +F++    +L  +N LI GF  +G
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 160 FPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
            P+ +I L+  ++ +  + PD  T    +SA ++LED  +G  +H +    G+   + + 
Sbjct: 92  LPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           +A++D+Y K  + E A ++FD M  +  V   TMI G+++  + + + ++F D       
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVD------- 204

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                                   M   G+  D+ T    L+A ++L     G+ I    
Sbjct: 205 ------------------------MLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLA 240

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K+  + +V + T L+ +Y+KCG   K   +F ++ + + ++Y A+I G   + +   A+
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAV 300

Query: 399 SYFSEMIG----------VGLMPDEITF---------------LGIL----------SAC 423
           + F E++           VGL+P  + F               +GI+          +  
Sbjct: 301 TLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM--PMAA 479
           C    V   R+ F +       SP+  L  ++ M+    ++GL + A  L + M   ++ 
Sbjct: 361 CRLNEVQFARQLFDE-------SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP 413

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV--LLANMYRDSNMWEEAGKV 537
           + V   ++  AC   G +SIG +    L++ +  +S +YV   L +MY       EA ++
Sbjct: 414 NPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472

Query: 538 RKMMEERGV 546
             +M ++ V
Sbjct: 473 FDLMVDKNV 481



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 99/198 (50%), Gaps = 3/198 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+ + G    A+ L+++M+      P+  T   +   CA LG   +G  + G 
Sbjct: 383 SWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSILSACAQLGALSIGKWVHGL 440

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +     + ++YV  A++ ++  CG +  A  +FD    +N+V+WN++I G+   G  +EA
Sbjct: 441 IKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEA 500

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMD 223
           ++LF +M    + P  VT + ++ AC+    ++ G EI H   +  G          ++D
Sbjct: 501 LKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVD 560

Query: 224 MYVKCGKLESAEEIFDSM 241
           +  + G+L +A E  + M
Sbjct: 561 ILGRAGQLTNALEFIERM 578


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 307/557 (55%), Gaps = 35/557 (6%)

Query: 33   KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS- 91
            K   N    +  SWN  I  + +     EA+  ++ +LR+G  +PD FT   + + C++ 
Sbjct: 950  KTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTG 1008

Query: 92   -LGLRF-LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
              G  F LG ++  + +K G   D +V  A+I ++   G +  A  +       +L SWN
Sbjct: 1009 DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWN 1068

Query: 150  SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
            +++ G+++S   R+A+  F  M    +  DE+T+   + A   L +L  G++I  Y  + 
Sbjct: 1069 AIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKL 1128

Query: 210  GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            G    + +++ ++DMY+KCG + +A E+F                        +I+R   
Sbjct: 1129 GFNNDLWVSSGVLDMYIKCGDMPNALELFG-----------------------EISR--- 1162

Query: 270  DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
               P++  V W  +I GY++      AL+++H M+ +G++PD  T    + A S L AL+
Sbjct: 1163 ---PDE--VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALE 1217

Query: 330  DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
             G  IH  + K +++L+  +GT+LVDMY KCG++  A +VF +M  R  + + A++ GLA
Sbjct: 1218 QGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLA 1277

Query: 390  LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             HG   +A++ F  M   G+ PD++TF+G+LSAC H GL  E  KYF  M   + ++P++
Sbjct: 1278 QHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEI 1337

Query: 450  KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
            +HYSC+VD LGR+G ++EAE +I SMP  A   ++ AL  ACR  G+    +R A KLL 
Sbjct: 1338 EHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLA 1397

Query: 510  LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
            LDP DS  YVLL+N+Y  S  W++    R MM+ + V+K PG S I+V   ++ F+V D+
Sbjct: 1398 LDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDR 1457

Query: 570  SHPELEQIYDCLVQLTR 586
            SHP+   IY+ +  L +
Sbjct: 1458 SHPQASLIYEKIEDLMK 1474



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 235/473 (49%), Gaps = 41/473 (8%)

Query: 30   YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
            Y  K+    Q  N F+WN  +  FL  G++  A+D +K +LR+     D+ T  ++    
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST-IGHDSVTLVIILSAA 904

Query: 90   ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
                   LG +I   V+K  F   + V N++++++   G +  A   F  S   +L+SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 150  SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA---QLEDLNLGREIHWYI 206
            ++I+ + ++    EAI  FRD+  + ++PD+ T+  ++ AC+   + E   LG ++H Y 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 207  SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
             + G+     ++ AL+D+Y K GK++ AE +                  + K+ F D+A 
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLL-----------------HGKYDF-DLA- 1065

Query: 267  KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                         WNAI+ GY+++ +S++AL  F  M   GI  D +T    + A   L 
Sbjct: 1066 ------------SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLI 1113

Query: 327  ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
             L  G  I  +  K  FN ++ + + ++DMY KCG++  AL++F E+   + + +T +I 
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMIS 1173

Query: 387  GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
            G   +G    A+S +  M   G+ PDE TF  ++ A      +++G++  A   ++ +L 
Sbjct: 1174 GYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHA---NVVKLD 1230

Query: 447  PKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
              L H+  + +VD+  + G +++A ++ R M +   VV W A+      HG+V
Sbjct: 1231 YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHV 1282



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 184/392 (46%), Gaps = 36/392 (9%)

Query: 5    GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
            G+I+  F  + LI     S+   +D    +L    + +  SWN  + G++++ K R+A++
Sbjct: 1028 GIINDSFVSTALIDL--YSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085

Query: 65   LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
             +  ++   G   D  T     K    L     G +I  + +KLGF+ D++V + V+ ++
Sbjct: 1086 HF-SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMY 1144

Query: 125  VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
            + CGD+  A  +F E    + V+W ++I+G++ +G    A+ ++  M++  V+PDE T  
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 185  GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
             ++ A + L  L  G++IH  + +   +L   +  +L+DMY KCG ++ A  +F  M  +
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 245  TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             VV    M++G A+ G +D                               EAL LF  MQ
Sbjct: 1265 KVVFWNAMLLGLAQHGHVD-------------------------------EALNLFRTMQ 1293

Query: 305  ATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            + GI+PD VT +  LSACS  G   +   +     +       +   + LVD   + G I
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 364  AKALQVFHEMPERNSLT-YTAIIGGLALHGKA 394
             +A  V   MP + S + Y A++G     G A
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDA 1385



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 188/449 (41%), Gaps = 61/449 (13%)

Query: 97   LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING-- 154
            LG      ++  G   D Y+ N +I ++  CG L  A  VFD+S  R+LV+WNS++    
Sbjct: 629  LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 155  -FVRSGFPR--EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
             F  S +    E  RLF  ++        +T+  ++  C     + +   +H Y  + G 
Sbjct: 689  QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 212  TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
             L + ++ AL+++Y K G +  A  +FD M  +  V    M+  Y +  F D A + F  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 272  LPEKYVVP---------------------------------------------WNAIIGG 286
                   P                                             WN  +  
Sbjct: 809  FHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTE 868

Query: 287  YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            ++ A +   A+  F  +  + I  D+VT V  LSA      LD G  IH  + K +F   
Sbjct: 869  FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV 928

Query: 347  VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            V +  +L++MY+K G +  A + F   PE + +++  +I   A +   ++AI  F +++ 
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLR 988

Query: 407  VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK------HYSCMVDLLG 460
             GL PD+ T   +L AC  G   DEG +YF   S +   + K          + ++DL  
Sbjct: 989  DGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYS 1044

Query: 461  RSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            + G ++EAE L+       D+  W A+ F
Sbjct: 1045 KGGKMDEAEFLLHG-KYDFDLASWNAIMF 1072



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 167/379 (44%), Gaps = 64/379 (16%)

Query: 101  IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
            + G+ +K+GF++D++V  A+++++   G +G A  +FD+   R+ V WN ++  +V + F
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 161  PREAIRLFRDMQLERVEPDEVTM---IGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
              EA+R F         PD   +   IG V++     D++  R+ H    ++      P 
Sbjct: 799  QDEALRFFSAFHRSGFXPDFSNLHCVIGGVNS-----DVSNNRKRHAEQVKAYAMKMFPF 853

Query: 218  A--------NALMDMYVKCGKLESAEEIFDSMVNKTV--VSCTTMIV------------- 254
                     N  +  ++  G++ +A + F +++  T+   S T +I+             
Sbjct: 854  DQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 255  ------------------------GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
                                     Y+K G +  A K F + PE  ++ WN +I  Y Q 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 291  KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW------IHRFIEKENFN 344
                EA+  F ++   G+KPD  T    L ACS     D+G +      +H +  K    
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 345  LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
             +  + TAL+D+Y+K G + +A  + H   + +  ++ AI+ G     K+  A+ +FS M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 405  IGVGLMPDEITFLGILSAC 423
              +G+  DEIT    + A 
Sbjct: 1091 HEMGIPIDEITLATAIKAS 1109



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 36/225 (16%)

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           + DL LG+  H  I  SG      L N L+ MY KCG L                 C+  
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSL-----------------CS-- 664

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK-----EALALFHEMQATG 307
                       AR++FD   ++ +V WN+I+  Y Q   S      E   LF  ++  G
Sbjct: 665 ------------ARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFG 712

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
                +T    L  C   G +     +H +  K  F L++ +  ALV++Y K G + +A 
Sbjct: 713 FSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQAR 772

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            +F +MPER+++ +  ++     +    +A+ +FS     G  PD
Sbjct: 773 LLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 287/540 (53%), Gaps = 33/540 (6%)

Query: 46  WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHV 105
           WN  I GF       +++ ++  ML + G   D+ T   +    A L    LG  I    
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDML-DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLA 240

Query: 106 LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAI 165
            K G   D+YV   +I ++  CG       +FD+    +L+S+N++I+G+  +     A+
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAV 300

Query: 166 RLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225
            LFR++       +  T++G++        L L R I     + G+ L   ++ AL  +Y
Sbjct: 301 TLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 226 VKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285
            +  +++                                AR++FD+ PEK +  WNA+I 
Sbjct: 361 CRLNEVQ-------------------------------FARQLFDESPEKSLASWNAMIS 389

Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL 345
           GY Q   +  A++LF EM    + P+ VT    LSAC+QLGAL  G W+H  I+ E    
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405
           NV + TALVDMYAKCG+I +A Q+F  M ++N +T+ A+I G  LHG   +A+  F EM+
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465
             G+ P  +TFL IL AC H GLV EG + F  M++ +   P  +HY+CMVD+LGR+G L
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQL 568

Query: 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525
             A + I  MP+     VWGAL  AC +H N  +   A+ +L +LDP++ G YVLL+N+Y
Sbjct: 569 TNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIY 628

Query: 526 RDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
                + +A  VR+++++R + KTPGC+ IE++   Y F   D+SHP+   I++ L +LT
Sbjct: 629 STDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLT 688



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 223/467 (47%), Gaps = 43/467 (9%)

Query: 35  LFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG 93
           LFN V  P+ F +NV IRGF + G  + ++ LY  + +    RPDNFTY       + L 
Sbjct: 68  LFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLE 127

Query: 94  LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLIN 153
              +G  +  H +  G   +++V +A++ ++       LA  VFD    R+ V WN++I+
Sbjct: 128 DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMIS 187

Query: 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213
           GF R+ +  ++IR+F DM    +  D  T+  +++A A+L++  LG  I    S+ GL  
Sbjct: 188 GFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS 247

Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            V +   L+ +Y KCGK                 SC   I+              FD + 
Sbjct: 248 DVYVLTGLISLYSKCGK-----------------SCKGRIL--------------FDQID 276

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
           +  ++ +NA+I GY     ++ A+ LF E+ A+G + ++ T V  +        L     
Sbjct: 277 QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQ---- 332

Query: 334 IHRFIEKENFNLNVVL----GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
           + R I+  +  + ++L     TAL  +Y +   +  A Q+F E PE++  ++ A+I G  
Sbjct: 333 LSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYT 392

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
            +G    AIS F EM+   L P+ +T   ILSAC   G +  G+     + S  RL   +
Sbjct: 393 QNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKS-ERLESNV 450

Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
              + +VD+  + G + EA QL   M +  +VV W A+     LHG+
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGH 496



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/489 (22%), Positives = 211/489 (43%), Gaps = 81/489 (16%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG 159
           +I   ++  G   D+     + H F   G +     +F++    +L  +N LI GF  +G
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 160 FPREAIRLFRDM-QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
            P+ +I L+  + +   + PD  T    +SA ++LED  +G  +H +    G+   + + 
Sbjct: 92  LPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           +A++D+Y K  + E A ++FD M  +  V   TMI G+++  + + + ++F D       
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVD------- 204

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                                   M   G+  D+ T    L+A ++L     G+ I    
Sbjct: 205 ------------------------MLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLA 240

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
            K+  + +V + T L+ +Y+KCG   K   +F ++ + + ++Y A+I G   + +   A+
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAV 300

Query: 399 SYFSEMIG----------VGLMPDEITF---------------LGIL----------SAC 423
           + F E++           VGL+P  + F               +GI+          +  
Sbjct: 301 TLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM--PMAA 479
           C    V   R+ F +       SP+  L  ++ M+    ++GL + A  L + M   ++ 
Sbjct: 361 CRLNEVQFARQLFDE-------SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP 413

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV--LLANMYRDSNMWEEAGKV 537
           + V   ++  AC   G +SIG +    L++ +  +S +YV   L +MY       EA ++
Sbjct: 414 NPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472

Query: 538 RKMMEERGV 546
             +M ++ V
Sbjct: 473 FDLMVDKNV 481



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 99/198 (50%), Gaps = 3/198 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+ + G    A+ L+++M+      P+  T   +   CA LG   +G  + G 
Sbjct: 383 SWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSILSACAQLGALSIGKWVHGL 440

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           +     + ++YV  A++ ++  CG +  A  +FD    +N+V+WN++I G+   G  +EA
Sbjct: 441 IKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEA 500

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMD 223
           ++LF +M    + P  VT + ++ AC+    ++ G EI H   +  G          ++D
Sbjct: 501 LKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVD 560

Query: 224 MYVKCGKLESAEEIFDSM 241
           +  + G+L +A E  + M
Sbjct: 561 ILGRAGQLTNALEFIERM 578


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 307/557 (55%), Gaps = 35/557 (6%)

Query: 33   KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS- 91
            K   N    +  SWN  I  + +     EA+  ++ +LR+G  +PD FT   + + C++ 
Sbjct: 950  KTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTG 1008

Query: 92   -LGLRF-LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
              G  F LG ++  + +K G   D +V  A+I ++   G +  A  +       +L SWN
Sbjct: 1009 DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWN 1068

Query: 150  SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209
            +++ G+++S   R+A+  F  M    +  DE+T+   + A   L +L  G++I  Y  + 
Sbjct: 1069 AIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKL 1128

Query: 210  GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
            G    + +++ ++DMY+KCG + +A E+F                        +I+R   
Sbjct: 1129 GFNNDLWVSSGVLDMYIKCGDMPNALELFG-----------------------EISR--- 1162

Query: 270  DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
               P++  V W  +I GY++      AL+++H M+ +G++PD  T    + A S L AL+
Sbjct: 1163 ---PDE--VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALE 1217

Query: 330  DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
             G  IH  + K +++L+  +GT+LVDMY KCG++  A +VF +M  R  + + A++ GLA
Sbjct: 1218 QGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLA 1277

Query: 390  LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
             HG   +A++ F  M   G+ PD++TF+G+LSAC H GL  E  KYF  M   + ++P++
Sbjct: 1278 QHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEI 1337

Query: 450  KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
            +HYSC+VD LGR+G ++EAE +I SMP  A   ++ AL  ACR  G+    +R A KLL 
Sbjct: 1338 EHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLA 1397

Query: 510  LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK 569
            LDP DS  YVLL+N+Y  S  W++    R MM+ + V+K PG S I+V   ++ F+V D+
Sbjct: 1398 LDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDR 1457

Query: 570  SHPELEQIYDCLVQLTR 586
            SHP+   IY+ +  L +
Sbjct: 1458 SHPQASLIYEKIEDLMK 1474



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 235/473 (49%), Gaps = 41/473 (8%)

Query: 30   YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
            Y  K+    Q  N F+WN  +  FL  G++  A+D +K +LR+     D+ T  ++    
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST-IGHDSVTLVIILSAA 904

Query: 90   ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149
                   LG +I   V+K  F   + V N++++++   G +  A   F  S   +L+SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 150  SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA---QLEDLNLGREIHWYI 206
            ++I+ + ++    EAI  FRD+  + ++PD+ T+  ++ AC+   + E   LG ++H Y 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 207  SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
             + G+     ++ AL+D+Y K GK++ AE +                  + K+ F D+A 
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLL-----------------HGKYDF-DLA- 1065

Query: 267  KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                         WNAI+ GY+++ +S++AL  F  M   GI  D +T    + A   L 
Sbjct: 1066 ------------SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLI 1113

Query: 327  ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
             L  G  I  +  K  FN ++ + + ++DMY KCG++  AL++F E+   + + +T +I 
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMIS 1173

Query: 387  GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
            G   +G    A+S +  M   G+ PDE TF  ++ A      +++G++  A   ++ +L 
Sbjct: 1174 GYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHA---NVVKLD 1230

Query: 447  PKLKHY--SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497
              L H+  + +VD+  + G +++A ++ R M +   VV W A+      HG+V
Sbjct: 1231 YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHV 1282



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 184/392 (46%), Gaps = 36/392 (9%)

Query: 5    GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
            G+I+  F  + LI     S+   +D    +L    + +  SWN  + G++++ K R+A++
Sbjct: 1028 GIINDSFVSTALIDL--YSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085

Query: 65   LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
             +  ++   G   D  T     K    L     G +I  + +KLGF+ D++V + V+ ++
Sbjct: 1086 HF-SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMY 1144

Query: 125  VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
            + CGD+  A  +F E    + V+W ++I+G++ +G    A+ ++  M++  V+PDE T  
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 185  GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
             ++ A + L  L  G++IH  + +   +L   +  +L+DMY KCG ++ A  +F  M  +
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 245  TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
             VV    M++G A+ G +D                               EAL LF  MQ
Sbjct: 1265 KVVFWNAMLLGLAQHGHVD-------------------------------EALNLFRTMQ 1293

Query: 305  ATGIKPDAVTTVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
            + GI+PD VT +  LSACS  G   +   +     +       +   + LVD   + G I
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 364  AKALQVFHEMPERNSLT-YTAIIGGLALHGKA 394
             +A  V   MP + S + Y A++G     G A
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDA 1385



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 188/449 (41%), Gaps = 61/449 (13%)

Query: 97   LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLING-- 154
            LG      ++  G   D Y+ N +I ++  CG L  A  VFD+S  R+LV+WNS++    
Sbjct: 629  LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 155  -FVRSGFPR--EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
             F  S +    E  RLF  ++        +T+  ++  C     + +   +H Y  + G 
Sbjct: 689  QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 212  TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271
             L + ++ AL+++Y K G +  A  +FD M  +  V    M+  Y +  F D A + F  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 272  LPEKYVVP---------------------------------------------WNAIIGG 286
                   P                                             WN  +  
Sbjct: 809  FHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTE 868

Query: 287  YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
            ++ A +   A+  F  +  + I  D+VT V  LSA      LD G  IH  + K +F   
Sbjct: 869  FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV 928

Query: 347  VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
            V +  +L++MY+K G +  A + F   PE + +++  +I   A +   ++AI  F +++ 
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLR 988

Query: 407  VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK------HYSCMVDLLG 460
             GL PD+ T   +L AC  G   DEG +YF   S +   + K          + ++DL  
Sbjct: 989  DGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYS 1044

Query: 461  RSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            + G ++EAE L+       D+  W A+ F
Sbjct: 1045 KGGKMDEAEFLLHG-KYDFDLASWNAIMF 1072



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 167/379 (44%), Gaps = 64/379 (16%)

Query: 101  IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
            + G+ +K+GF++D++V  A+++++   G +G A  +FD+   R+ V WN ++  +V + F
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 161  PREAIRLFRDMQLERVEPDEVTM---IGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
              EA+R F         PD   +   IG V++     D++  R+ H    ++      P 
Sbjct: 799  QDEALRFFSAFHRSGFFPDFSNLHCVIGGVNS-----DVSNNRKRHAEQVKAYAMKMFPF 853

Query: 218  A--------NALMDMYVKCGKLESAEEIFDSMVNKTV--VSCTTMIV------------- 254
                     N  +  ++  G++ +A + F +++  T+   S T +I+             
Sbjct: 854  DQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 255  ------------------------GYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA 290
                                     Y+K G +  A K F + PE  ++ WN +I  Y Q 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 291  KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW------IHRFIEKENFN 344
                EA+  F ++   G+KPD  T    L ACS     D+G +      +H +  K    
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 345  LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
             +  + TAL+D+Y+K G + +A  + H   + +  ++ AI+ G     K+  A+ +FS M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 405  IGVGLMPDEITFLGILSAC 423
              +G+  DEIT    + A 
Sbjct: 1091 HEMGIPIDEITLATAIKAS 1109



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 36/225 (16%)

Query: 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTM 252
           + DL LG+  H  I  SG      L N L+ MY KCG L                 C+  
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSL-----------------CS-- 664

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK-----EALALFHEMQATG 307
                       AR++FD   ++ +V WN+I+  Y Q   S      E   LF  ++  G
Sbjct: 665 ------------ARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFG 712

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
                +T    L  C   G +     +H +  K  F L++ +  ALV++Y K G + +A 
Sbjct: 713 FSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQAR 772

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412
            +F +MPER+++ +  ++     +    +A+ +FS     G  PD
Sbjct: 773 LLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 309/574 (53%), Gaps = 62/574 (10%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           ++ SW  A+R    +   REA+  Y +M  +G  RPDNF +P + K  + L     G +I
Sbjct: 56  STASWVDALRSRTRSNDFREAISTYIEMTVSGA-RPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 102 FGHVLKLGFD----------VDMY-----------VHNAVIHVFVSCGDLGLACNVFDES 140
               +K G+           V+MY            +NA++ ++   G +  +  +F+  
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R++VSWN++I+ F +S    EA+  FR M LE VE D VT+  ++ AC+ LE L++G+
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 201 EIHWYI-SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259
           EIH Y+   + L     + +AL+DMY  C ++ES                          
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESG------------------------- 269

Query: 260 GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM-QATGIKPDAVTTVHC 318
                 R++FD +  + +  WNA+I GY +    ++AL LF EM +  G+ P+  T    
Sbjct: 270 ------RRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASV 323

Query: 319 LSAC-SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           + AC   L A+  G  IH +  +     ++ +G+ALVDMYAKCG +  + +VF+EMP +N
Sbjct: 324 MPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKN 383

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMI-----GVGLMPDEITFLGILSACCHGGLVDEG 432
            +T+  +I    +HGK  +A+  F  M+     G    P+E+TF+ + +AC H GL+ EG
Sbjct: 384 VITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEG 443

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVV-VWGALFFAC 491
              F +M     + P   HY+C+VDLLGR+G LEEA +L+ +MP   D V  W +L  AC
Sbjct: 444 LNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC 503

Query: 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPG 551
           R+H NV +GE AA  LL L+P  +  YVLL+N+Y  + +W +A +VRK M + GV+K PG
Sbjct: 504 RIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPG 563

Query: 552 CSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           CS IE    +++F+  D SHP+ EQ++  L  L+
Sbjct: 564 CSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLS 597



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 197/424 (46%), Gaps = 30/424 (7%)

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
           S  R+  SW   +    RS   REAI  + +M +    PD      ++ A + L+DL  G
Sbjct: 52  SPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 200 REIHWYISESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
            +IH    + G  + +V +AN L++MY KCG +           +KT  +   M + YAK
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIG----------DKTFTNNALMAM-YAK 160

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
            G +D ++ +F+   ++ +V WN +I  + Q+ R  EALA F  M   G++ D VT    
Sbjct: 161 LGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASV 220

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377
           L ACS L  LD G  IH ++ + N  + N  +G+ALVDMY  C  +    +VF  +  R 
Sbjct: 221 LPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR 280

Query: 378 SLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITFLGILSACCHG-GLVDEGRKY 435
              + A+I G A +G    A+  F EMI V GL+P+  T   ++ AC H    + +G++ 
Sbjct: 281 IELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEI 340

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            A       L+  +   S +VD+  + G L  + ++   MP   +V+ W  L  AC +HG
Sbjct: 341 HAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHG 398

Query: 496 NVSIGERA----------AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545
               GE A          A +  E  P +     + A       + E      +M  + G
Sbjct: 399 K---GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHG 455

Query: 546 VEKT 549
           VE T
Sbjct: 456 VEPT 459



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML----RNGGTRPDNFTYP 83
           L+   ++   + N N  +WNV I      GK  EA++L+K M+    R G  +P+  T+ 
Sbjct: 369 LNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFI 428

Query: 84  LLFKVCASLGLRFLGYEIF 102
            +F  C+  GL   G  +F
Sbjct: 429 TVFAACSHSGLISEGLNLF 447


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 170/426 (39%), Positives = 263/426 (61%), Gaps = 1/426 (0%)

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           +N++   +  S  P  A+ L R M      PD  T   ++ AC+ L  L  G+E+H    
Sbjct: 55  YNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQAL 114

Query: 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
           + GL   V + N+L+ +Y    +++SA  +FD M  + + S TT++  YA    ++ ARK
Sbjct: 115 KFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARK 174

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           +FD++PE+ VV ++A++  YV+  R +EAL LF E+ +  I+P     +  L AC+ LGA
Sbjct: 175 VFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGA 234

Query: 328 LDDGIWIHRFI-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           LD G W++ F+   +   ++  + TAL+DM+ KCG+I  AL VF    E++   +TA++ 
Sbjct: 235 LDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLS 294

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           GLA+HG     I  F +M+  G+ PDE+TF+ +LS C H GLV+EG  YF +M S F + 
Sbjct: 295 GLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVE 354

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P ++H+ C+VDLLGR+GL+++A QLI  MP   +  +WGAL  ACR++ NV +GE AA  
Sbjct: 355 PTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQW 414

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L++ +P +  +Y+ L ++YR++  W+E  KV+  M+E G  K PGCS IEV G+ YEF+V
Sbjct: 415 LIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVV 474

Query: 567 RDKSHP 572
            DKSHP
Sbjct: 475 GDKSHP 480



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 186/389 (47%), Gaps = 67/389 (17%)

Query: 32  TKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
            ++LF+ V +P+++ +N   R +  +     A+ L++ M R+G   PD +T+P L K C+
Sbjct: 40  ARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHG-PPPDTYTFPFLLKACS 98

Query: 91  SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG------------------- 131
           +L     G E+    LK G    ++V N++IH++ S   +                    
Sbjct: 99  ALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTT 158

Query: 132 -LAC-----------NVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
            LAC            VFDE   R++VS+++++  +VR    REA+ LFR++   ++EP 
Sbjct: 159 LLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPS 218

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIF 238
           +  ++ ++ ACA L  L++GR ++ ++  S G  +   +A AL+DM+ KCG +E A  +F
Sbjct: 219 DSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVF 278

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
           +    K V   T M+ G A  G                                 ++ + 
Sbjct: 279 EGAKEKHVGEWTAMLSGLAMHGL-------------------------------GEQLIE 307

Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMY 357
            F +M  +GIKPD VT V  LS CS  G +++G++    +E +      V     +VD+ 
Sbjct: 308 AFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLL 367

Query: 358 AKCGNIAKALQVFHEMP-ERNSLTYTAII 385
            + G I +A+Q+  EMP E N+  + A++
Sbjct: 368 GRAGLIDQAMQLISEMPFEPNAAIWGALL 396


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 295/558 (52%), Gaps = 12/558 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K   ++   N ++W+  I      G++  A+ +Y++          +    +  +
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER----------DPVKSIACR 325

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVH-NAVIHVFVSCGDLGLACNVFDESCVRNLV 146
                GL   G      +L       + V  NA+I  ++  G +  A  +FD+   RN +
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW  +I G+ ++G   EA+ L +++    + P   ++  +  AC+ +  L  G ++H   
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G        NAL+ MY KC  +E A ++F  MV K +VS  + +    +   LD AR
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEAR 505

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
             FD++  +  V W  II  Y  A++S EA+  F  M      P++      L  C  LG
Sbjct: 506 NTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           A   G  IH    K   +  +++  AL+ MY KCG  A + ++F  M ER+  T+  II 
Sbjct: 566 ASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIIT 624

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A HG   +AI  +  M   G++P+E+TF+G+L+AC H GLVDEG K+F  MS  + L+
Sbjct: 625 GYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLT 684

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P  +HY+CMVDLLGR+G ++ AEQ I  MP+  D V+W AL  AC++H N  IG+RAA K
Sbjct: 685 PLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEK 744

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L  ++P ++G YV+L+N+Y    MW E  +VRK+M+++GV K PGCS  ++   ++ F+ 
Sbjct: 745 LFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVT 804

Query: 567 RDKSHPELEQIYDCLVQL 584
            DK H ++E+I   L +L
Sbjct: 805 GDKQHEQIEEIVATLEEL 822



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/512 (24%), Positives = 216/512 (42%), Gaps = 59/512 (11%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW V I G+       +A D++ +M R G   PD   +         LG   +   +
Sbjct: 188 NLVSWTVMISGYGRIENHGKAWDIFCKMHREG-LLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFV-SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
               LK GF+ D+ +  A+++V+      L  A   F+    RN  +W+++I      G 
Sbjct: 247 RVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGR 306

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
              AI ++        E D V  I    AC                             A
Sbjct: 307 IDAAIAVY--------ERDPVKSI----ACR---------------------------TA 327

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+    +CG+++ A  +F+ +    VVS   +I GY + G ++ A+++FD +P +  + W
Sbjct: 328 LITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
             +I GY Q  RS+EAL L  E+  +G+ P   +      ACS + AL+ G  +H    K
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                N     AL+ MY KC N+  A QVF  M  ++ +++ + +  L  +    +A + 
Sbjct: 448 VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNT 507

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL--SPKLKHYSCMVDL 458
           F  M    L  D++++  I+SA  H    +E    F  M     L  SP L     +   
Sbjct: 508 FDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGAL---FFACRLHGNVSIGERAAMKLLEL-DPQD 514
           LG S + ++   +   + M ++++V  AL   +F C        G   + ++ +L + +D
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC--------GCADSRRIFDLMEERD 615

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
              +  +   Y    +  EA K+ + ME  GV
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGV 647



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 174/363 (47%), Gaps = 21/363 (5%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G +G A  VFD    R++++WNS+I+ +  +G P  A  L+  +    +    + + G  
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMDMYVKCGKLESAEEIFDSMVNKTV 246
                     LGR +       G+     +A NA++  YV+ G +  A  +FD+M ++ V
Sbjct: 108 ---------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            S  +M+ GY     +  AR +F+ +PE+ +V W  +I GY + +   +A  +F +M   
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI-AK 365
           G+ PD       LSA   LG LD    +     K  F  +VV+GTA++++Y++  ++   
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A++ F  M ERN  T++ +I  L+ HG  +DA     E   V  +      +  L+ C  
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALS-HGGRIDAAIAVYERDPVKSIACRTALITGLAQC-- 335

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            G +D+ R  F Q+       P +  ++ ++    ++G++ EA++L   MP   + + W 
Sbjct: 336 -GRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPF-RNTISWA 388

Query: 486 ALF 488
            + 
Sbjct: 389 GMI 391



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           + G++  A E+FD+M  + +++  +MI  Y   G  D AR ++D +    +     ++ G
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           Y +  R  EA  +F  M    ++ + V     +S   Q G     I + R +     + +
Sbjct: 106 YGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNG----DITMARRLFDAMPSRD 157

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG---LALHGKALDAISYFSE 403
           V    +++  Y     +  A  +F +MPERN +++T +I G   +  HGKA D    F +
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD---IFCK 214

Query: 404 MIGVGLMPDEITFLGILSA 422
           M   GL+PD+  F   LSA
Sbjct: 215 MHREGLLPDQSNFASALSA 233


>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61800 [Vitis vinifera]
          Length = 576

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 261/442 (59%), Gaps = 2/442 (0%)

Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
           G A +VF+     +   +N++I        P  A+ +F  M+   V PD  T    + AC
Sbjct: 80  GYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKAC 139

Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           + L  L+L + +H    + G    + + N L+ +Y     L  A ++F+    K VVS  
Sbjct: 140 SLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYN 199

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQA-KRSKEALALFHEMQATGIK 309
            +I G+ K G  D AR++FD +P +  V W  ++ GY Q+     +A+ LF+ M  + ++
Sbjct: 200 ALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVR 259

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           PD +  V  LSAC+QLG L+ G  IH +I++    +N  L T LVD+YAKCG I  A ++
Sbjct: 260 PDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREI 319

Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
           F   P++N  T+ A++ GL +HG+   ++ YFS MI  G+ PD ++FLGIL  C H GLV
Sbjct: 320 FESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLV 379

Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
            E R +F +M  ++R+  +LKHY CM DLLGR+GL+ EA ++I  MPM  DV VWG +  
Sbjct: 380 CEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLG 439

Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
            CR+HGNV I E+AA  ++ L+P+D G+Y ++A++Y ++  WE+  ++R++M  R V+K 
Sbjct: 440 GCRIHGNVEIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKN 499

Query: 550 PGCSSIEV-NGLLYEFIVRDKS 570
           PGCS +++ NG+ + F+    S
Sbjct: 500 PGCSLVQLNNGVFHGFVAGSAS 521



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 183/430 (42%), Gaps = 93/430 (21%)

Query: 16  LIAFCAISESKNLD---------YCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           L AF A+  + N           Y   +   + NP++F +N  IR          A+ ++
Sbjct: 58  LTAFTALLPTTNASPTTPAALTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIF 117

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
            +M R     PD  T+P   K C+ L    L   +     K GF  D++V N +IHV+  
Sbjct: 118 VRM-RRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSV 176

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--------FPR---------------- 162
              L  AC VF+E+ ++++VS+N+LI GF++ G        F +                
Sbjct: 177 NKHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGY 236

Query: 163 --------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT 214
                   +AI+LF  M +  V PD + ++  +SACAQL +L  G+ IH YI ++ + + 
Sbjct: 237 AQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPIN 296

Query: 215 VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274
             L+  L+D+Y KCG +E+A EIF+S                                P+
Sbjct: 297 AFLSTGLVDLYAKCGCIETAREIFESS-------------------------------PD 325

Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWI 334
           K +  WNA++ G     R   +L  F  M   GIKPD V+ +  L  C   G +      
Sbjct: 326 KNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLV------ 379

Query: 335 HRFIEKENF--NLNVVLGTA--------LVDMYAKCGNIAKALQVFHEMPERNSL-TYTA 383
               E  NF   + VV            + D+  + G I +A+++   MP    +  +  
Sbjct: 380 ---CEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGG 436

Query: 384 IIGGLALHGK 393
           ++GG  +HG 
Sbjct: 437 VLGGCRIHGN 446


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/483 (37%), Positives = 281/483 (58%), Gaps = 15/483 (3%)

Query: 105 VLKLGFDVDMYVHNAVIHVFVSC-----GDLGLACNVFDESCVRNLVSWNSLINGFVR-S 158
           +L+LG   +   ++A+  +F  C     GD+  A  +F      +   +N+L   F   S
Sbjct: 25  LLRLGLSTN---NHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLS 81

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
             P  ++  +  M    V P+  T   ++ AC   E+    +++H ++ + G        
Sbjct: 82  QTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEE---AKQLHAHVLKFGFGGDTYAL 138

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP-EKYV 277
           N L+ +Y   G L+ A  +F +M +  VVS T+++ GY+++G +D A ++F+ +P +K  
Sbjct: 139 NNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNS 198

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
           V WNA+I  +V+  R +EA ALF  M+    ++ D       LSAC+ +GAL+ G+WIH+
Sbjct: 199 VSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHK 258

Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           ++EK    L+  L T ++DMY KCG + KA  VF  +  +   ++  +IGG A+HGK  D
Sbjct: 259 YVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGED 318

Query: 397 AISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
           AI  F EM    ++ PD ITF+ +L+AC H GLV+EG  YF  M  +  + P  +HY CM
Sbjct: 319 AIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCM 378

Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
           VDLL R+G LEEA+++I  MPM+ D  V GAL  ACR+HGN+ +GE    +++ELDP++S
Sbjct: 379 VDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENS 438

Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE 575
           G YV+L NMY     WE+   VRK+M++RGV+K PG S IE+ G++ EF+   + HP  E
Sbjct: 439 GRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAE 498

Query: 576 QIY 578
            IY
Sbjct: 499 AIY 501



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 198/425 (46%), Gaps = 72/425 (16%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE-AV 63
           GL ++  A SR+  FC++S+  +++Y  K+   + NP++F +N   + F    +    ++
Sbjct: 29  GLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSL 88

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
             Y  ML++  T P+ FT+P L + C    L     ++  HVLK GF  D Y  N +IHV
Sbjct: 89  LFYSHMLQHCVT-PNAFTFPSLIRACK---LEEEAKQLHAHVLKFGFGGDTYALNNLIHV 144

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLING----------------------------- 154
           + + G L  A  VF      N+VSW SL++G                             
Sbjct: 145 YFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAM 204

Query: 155 ---FVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
              FV+    REA  LFR M++E ++E D      M+SAC  +  L  G  IH Y+ ++G
Sbjct: 205 IACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTG 264

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
           + L   LA  ++DMY KCG L+ A  +F  +  K V S   MI G+A  G          
Sbjct: 265 IVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHG---------- 314

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALD 329
                                + ++A+ LF EM+    + PD++T V+ L+AC+  G ++
Sbjct: 315 ---------------------KGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVE 353

Query: 330 DGIWIHRF-IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGG 387
           +G +  R+ ++    +        +VD+ A+ G + +A +V  EMP   ++    A++G 
Sbjct: 354 EGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGA 413

Query: 388 LALHG 392
             +HG
Sbjct: 414 CRIHG 418


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 305/543 (56%), Gaps = 21/543 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L Y  K+   + + N  S NV I GF   G  REA+  +KQ +  G  RP++ T   +  
Sbjct: 84  LSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQ-VGLGNFRPNSVTIASVLP 142

Query: 88  VCASLGLRFLGYEIFGHV----LKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
            CAS+       E+ G V    +KLG + D+YV  AV+ ++ +CG+L LA  VFD+   +
Sbjct: 143 ACASV-------ELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDK 195

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGMVSACAQLEDLNLGREI 202
           N+VS+N+ I+G +++G P     +F+D+     E P+ VT++ ++SAC++L  +  GR+I
Sbjct: 196 NVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQI 255

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV-NKTVVSCTTMIVGYAKFGF 261
           H  + +  +     +  AL+DMY KCG    A  IF  +  ++ +V+  +MI G    G 
Sbjct: 256 HGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQ 315

Query: 262 LDIARKIFDDLPEKYVVP----WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317
            DIA ++F+ L  + + P    WN +I G+ Q  +  EA   FH+MQ+ G+     +   
Sbjct: 316 SDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITS 375

Query: 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF--HEMPE 375
            L ACS L AL  G  IH    + N + +  + TAL+DMY KCG+   A +VF   ++  
Sbjct: 376 LLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKP 435

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
            +   + A+I G   +GK   A   F++M    + P+  T + ILS C H G +D G + 
Sbjct: 436 DDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQL 495

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M+  + L+P  +H+ CMVDLLGRSG L+EA++LI  MP  A V V+ +L  ACR H 
Sbjct: 496 FKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHHS 554

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           + ++GE  A KL EL+PQD   +V+L+N+Y     W +  +VR+MM +RG++K PGCSSI
Sbjct: 555 DSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSSI 614

Query: 556 EVN 558
            V 
Sbjct: 615 GVT 617



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 150/551 (27%), Positives = 259/551 (47%), Gaps = 53/551 (9%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           I   +  G  REA+ LY + L +       FT+P L K  A L     G  +   ++K G
Sbjct: 5   IAKLVSNGFYREALSLYSK-LHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTG 63

Query: 110 FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169
           F +D+Y   A+  +++    L  A  VF+E   RNL S N  I+GF R+G+ REA+  F+
Sbjct: 64  FHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFK 123

Query: 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229
            + L    P+ VT+  ++ ACA +E   L  ++H    + G+   + +A A++ MY  CG
Sbjct: 124 QVGLGNFRPNSVTIASVLPACASVE---LDGQVHCLAIKLGVESDIYVATAVVTMYSNCG 180

Query: 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ 289
           +L  A+++FD +++K VVS    I G  + G   +   +F DL                 
Sbjct: 181 ELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDL----------------- 223

Query: 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349
                        ++++G  P++VT V  LSACS+L  +  G  IH  + K   N + ++
Sbjct: 224 -------------LESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMV 270

Query: 350 GTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
           GTALVDMY+KCG    A  +F E+   RN +T+ ++I G+ L+G++  A+  F ++   G
Sbjct: 271 GTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEG 330

Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
           L PD  T+  ++S     G V E  K+F +M S   ++  LK  + ++        L+  
Sbjct: 331 LEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIA-SLKSITSLLRACSALSALQSG 389

Query: 469 EQL----IRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           +++    IR+  +  D  +  AL       G+  +  R   +  ++ P D   +  + + 
Sbjct: 390 KEIHGHTIRT-NIDTDEFISTALIDMYMKCGHSYLARRVFCQ-FQIKPDDPAFWNAMISG 447

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPG--------CS---SIEVNGLLYEFIVRDKSHPE 573
           Y  +  ++ A ++   M+E  V+            CS    I+    L++ + RD     
Sbjct: 448 YGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNP 507

Query: 574 LEQIYDCLVQL 584
             + + C+V L
Sbjct: 508 TSEHFGCMVDL 518


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 270/487 (55%), Gaps = 50/487 (10%)

Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVS--CGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           +I G +LK G  +D    + ++    S   G L  A  VFD     N   WN++I G+  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           S  P EA+ L+  M    V  +  T   ++ AC+ +  L   ++IH +I + G    +  
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYT 155

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            N+L+++Y K G ++SA                               R +FD + +   
Sbjct: 156 TNSLLNVYSKSGDIKSA-------------------------------RLLFDQVDQ--- 181

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
                         R  EAL LFH MQ  GIK D V  V  L AC+ LG LD G WIH +
Sbjct: 182 --------------RDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 227

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
           I+K    ++ +LG  L+DMYAKCG++ +A++VF +M E+    +TA+I G A+HG+  +A
Sbjct: 228 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 287

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           + +F +M   G+ P+++TF GIL+AC H GLV E +  F  M  I    P ++HY CMVD
Sbjct: 288 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 347

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LLGR+GLL+EAE+LI +MP+  +  +WGAL  AC +HGN+ +G++    L+++DP   G 
Sbjct: 348 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGR 407

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           Y+ LA+++  +  W +A +VR+ M+E+GV K PGCS I VNG  +EF+  D+SHP++++I
Sbjct: 408 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEI 467

Query: 578 YDCLVQL 584
              L Q+
Sbjct: 468 DHMLEQI 474



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 189/395 (47%), Gaps = 53/395 (13%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M  TGLI      S+L+AFCA   S +L Y   +   +  PN+F WN  IRG+  + +  
Sbjct: 41  MLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPE 100

Query: 61  EAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           EA+ LY  ML +  + P N +T+P L K C+S+       +I  H++K+GF  ++Y  N+
Sbjct: 101 EALLLYHHMLYH--SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNS 158

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           +++V+   GD+  A  +FD+   R+                  EA+ LF  MQ   ++ D
Sbjct: 159 LLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHRMQTAGIKLD 201

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
            V ++  + ACA L  L+ G+ IH YI +  + +   L   L+DMY KCG LE A E+F 
Sbjct: 202 NVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFR 261

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            M  K V   T MI GYA  G                               R +EAL  
Sbjct: 262 KMEEKGVSVWTAMISGYAIHG-------------------------------RGREALEW 290

Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYA 358
           F +MQ  G++P+ +T    L+ACS  G + +   +   +E+   F  ++     +VD+  
Sbjct: 291 FMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLG 350

Query: 359 KCGNIAKALQVFHEMPER-NSLTYTAIIGGLALHG 392
           + G + +A ++   MP + N+  + A++    +HG
Sbjct: 351 RAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 385



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 29/287 (10%)

Query: 218 ANALMDMYV--KCGKLESAEEIFDSMVNKTVV------SCTTMIVGYAKFGFLDIARKIF 269
           +NA   +++  +C  +E   +I   M+   ++      S           G L  AR +F
Sbjct: 16  SNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVF 75

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
           D +       WN +I GY  +K  +EAL L+H M    +  +A T    L ACS + AL+
Sbjct: 76  DRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALE 135

Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
           +   IH  I K  F   +    +L+++Y+K G+I  A  +F ++ +R++           
Sbjct: 136 ETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT----------- 184

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPK 448
                 +A++ F  M   G+  D +  +  L AC   G++D+G+   A +      + P 
Sbjct: 185 ------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 238

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           L     ++D+  + G LEEA ++ R M     V VW A+     +HG
Sbjct: 239 LG--CVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHG 282


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 295/558 (52%), Gaps = 12/558 (2%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           LD   K   ++   N ++W+  I      G++  A+ +Y++          +    +  +
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER----------DPVKSIACR 325

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVH-NAVIHVFVSCGDLGLACNVFDESCVRNLV 146
                GL   G      +L       + V  NA+I  ++  G +  A  +FD+   RN +
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SW  +I G+ ++G   EA+ L +++    + P   ++  +  AC+ +  L  G ++H   
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            + G        NAL+ MY KC  +E A ++F  MV K +VS  + +    +   LD AR
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEAR 505

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
             FD++  +  V W  II  Y  A++S EA+  F  M      P++      L  C  LG
Sbjct: 506 NTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
           A   G  IH    K   +  +++  AL+ MY KCG  A + ++F  M ER+  T+  II 
Sbjct: 566 ASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIIT 624

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
           G A HG   +AI  +  M   G++P+E+TF+G+L+AC H GLVDEG K+F  MS  + L+
Sbjct: 625 GYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLT 684

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P  +HY+CMVDLLGR+G ++ AEQ I  MP+  D V+W AL  AC++H N  IG+RAA K
Sbjct: 685 PLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEK 744

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
           L  ++P ++G YV+L+N+Y    MW E  +VRK+M+++GV K PGCS  ++   ++ F+ 
Sbjct: 745 LFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVT 804

Query: 567 RDKSHPELEQIYDCLVQL 584
            DK H ++E+I   L +L
Sbjct: 805 GDKQHEQIEEIVATLEEL 822



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/512 (24%), Positives = 216/512 (42%), Gaps = 59/512 (11%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW V I G+       +A D++ +M R G   PD   +         LG   +   +
Sbjct: 188 NLVSWTVMISGYGRIENHGKAWDIFCKMHREG-LLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFV-SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
               LK GF+ D+ +  A+++V+      L  A   F+    RN  +W+++I      G 
Sbjct: 247 RVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGR 306

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
              AI ++        E D V  I    AC                             A
Sbjct: 307 IDAAIAVY--------ERDPVKSI----ACR---------------------------TA 327

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L+    +CG+++ A  +F+ +    VVS   +I GY + G ++ A+++FD +P +  + W
Sbjct: 328 LITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
             +I GY Q  RS+EAL L  E+  +G+ P   +      ACS + AL+ G  +H    K
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
                N     AL+ MY KC N+  A QVF  M  ++ +++ + +  L  +    +A + 
Sbjct: 448 VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNT 507

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL--SPKLKHYSCMVDL 458
           F  M    L  D++++  I+SA  H    +E    F  M     L  SP L     +   
Sbjct: 508 FDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGAL---FFACRLHGNVSIGERAAMKLLEL-DPQD 514
           LG S + ++   +   + M ++++V  AL   +F C        G   + ++ +L + +D
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC--------GCADSRRIFDLMEERD 615

Query: 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546
              +  +   Y    +  EA K+ + ME  GV
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGV 647



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 174/363 (47%), Gaps = 21/363 (5%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G +G A  VFD    R++++WNS+I+ +  +G P  A  L+  +    +    + + G  
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLA-NALMDMYVKCGKLESAEEIFDSMVNKTV 246
                     LGR +       G+     +A NA++  YV+ G +  A  +FD+M ++ V
Sbjct: 108 ---------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 247 VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306
            S  +M+ GY     +  AR +F+ +PE+ +V W  +I GY + +   +A  +F +M   
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI-AK 365
           G+ PD       LSA   LG LD    +     K  F  +VV+GTA++++Y++  ++   
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A++ F  M ERN  T++ +I  L+ HG  +DA     E   V  +      +  L+ C  
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALS-HGGRIDAAIAVYERDPVKSIACRTALITGLAQC-- 335

Query: 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWG 485
            G +D+ R  F Q+       P +  ++ ++    ++G++ EA++L   MP   + + W 
Sbjct: 336 -GRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPF-RNTISWA 388

Query: 486 ALF 488
            + 
Sbjct: 389 GMI 391



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
           + G++  A E+FD+M  + +++  +MI  Y   G  D AR ++D +    +     ++ G
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
           Y +  R  EA  +F  M    ++ + V     +S   Q G     I + R +     + +
Sbjct: 106 YGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNG----DITMARRLFDAMPSRD 157

Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG---LALHGKALDAISYFSE 403
           V    +++  Y     +  A  +F +MPERN +++T +I G   +  HGKA D    F +
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD---IFCK 214

Query: 404 MIGVGLMPDEITFLGILSA 422
           M   GL+PD+  F   LSA
Sbjct: 215 MHREGLLPDQSNFASALSA 233


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 200/588 (34%), Positives = 308/588 (52%), Gaps = 72/588 (12%)

Query: 27  NLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL 85
           NL + +  LFN +  P + +W   IR +   G   +++  +  ML +G   PD+  +P +
Sbjct: 54  NLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSV 112

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS------CGDLGL-ACNVFD 138
            K CA L    LG  + G+++++G D D+Y  NA+++++         G   L A  VFD
Sbjct: 113 LKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFD 172

Query: 139 ESCVR-------------------------NLVSWNSLINGFVRSGFPREAIRLFRDMQL 173
           E   R                         +LVSWN++I G  R+G   E +R+ R+M  
Sbjct: 173 EMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGG 232

Query: 174 ERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233
             ++PD  T+  ++   A+  D++ G+EIH      GL   + +A++L+DMY KC ++  
Sbjct: 233 ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293
                         SC                 ++F  L E+  + WN+II G VQ    
Sbjct: 293 --------------SC-----------------RVFTLLTERDGISWNSIIAGCVQNGLF 321

Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
            E L  F +M    IKP + +    + AC+ L  L  G  +H +I +  F+ N+ + ++L
Sbjct: 322 DEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSL 381

Query: 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
           VDMYAKCGNI  A Q+F  M  R+ +++TA+I G ALHG+A DAI  F +M   G+    
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK--- 438

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
                +L+AC HGGLVDE  KYF  M+  F ++P ++HY+ + DLLGR+G LEEA   I 
Sbjct: 439 ----AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFIC 494

Query: 474 SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533
            M +     +W  L  ACR+H N+ + E+ A ++LE+DP ++G Y+LLAN+Y  +  W+E
Sbjct: 495 GMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKE 554

Query: 534 AGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           A K R  M   G+ KTP CS IEV   +Y F+  D+SHP  E+I + +
Sbjct: 555 AAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAM 602



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 158/343 (46%), Gaps = 28/343 (8%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           +  SWN  I G ++ G   E +  ++QML     +P ++++  +   CA L    LG ++
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLM-AKIKPKSYSFSSIMPACAHLTTLHLGKQL 362

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G++ + GFD ++++ ++++ ++  CG++  A  +FD   +R++VSW ++I G    G  
Sbjct: 363 HGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDLNLGREIHWYISESGLTLTVPLAN 219
            +AI LF  M+ E ++        +++AC+   L D    +  +    + G+   V    
Sbjct: 423 PDAIELFEQMETEGIK-------AVLTACSHGGLVD-EAWKYFNSMTRDFGIAPGVEHYA 474

Query: 220 ALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           A+ D+  + G+LE A +    M +  T     T++        +D+A K+ + + E  V 
Sbjct: 475 AVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILE--VD 532

Query: 279 PWNA-----IIGGYVQAKRSKEALALFHEMQATGI-KPDAVTTVHCLSACSQLGALDDGI 332
           P N      +   Y  A+R KEA      M+  GI K  A + +   +      A D+  
Sbjct: 533 PNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDES- 591

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
             H   EK    + V     LV++  K G +    +V H++ E
Sbjct: 592 --HPCYEKIREAMEV-----LVELMEKEGYVPDTSEVHHDVEE 627



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 117/286 (40%), Gaps = 36/286 (12%)

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
           Y+    L  + ++F+ +     + W ++I  Y       ++L  F  M A+G+ PD    
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK-------------CGN 362
              L +C+ L  L+ G  +H +I +   + ++  G AL++MY+K              G 
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 363 IAKAL-------------------QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           +   +                   ++F  MPE++ +++  II G A +G   + +    E
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR-LSPKLKHYSCMVDLLGRS 462
           M G  L PD  T   +L        +  G++      SI + L   +   S ++D+  + 
Sbjct: 230 MGGANLKPDSFTLSSVLPLIAENVDISRGKEIHG--CSIRQGLDADIYVASSLIDMYAKC 287

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
             + ++ ++  ++    D + W ++   C  +G    G R   ++L
Sbjct: 288 TRVADSCRVF-TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQML 332


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/599 (32%), Positives = 301/599 (50%), Gaps = 62/599 (10%)

Query: 14  SRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
           +R     A++ S+ +    ++  ++   ++ S+N  I GF  TG    +V LY+ +LR  
Sbjct: 81  TRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREE 140

Query: 74  GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD---------VDMY--------- 115
             RP   T   +  V ++L  R LG+ +   VL+LGF          VDMY         
Sbjct: 141 SVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDA 200

Query: 116 -------------VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162
                        ++N +I   + C  +  A  +F     R+ ++W +++ G  ++G   
Sbjct: 201 RRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQL 260

Query: 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM 222
           EA+ +FR M+ E V  D+ T   +++AC  L     G++IH YI+ +     V + +AL+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALV 320

Query: 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNA 282
           DMY KC  +  AE +F  M  + ++S                               W A
Sbjct: 321 DMYSKCRSIRLAEAVFRRMTCRNIIS-------------------------------WTA 349

Query: 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342
           +I GY Q   S+EA+  F EMQ  GIKPD  T    +S+C+ L +L++G   H       
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
               + +  ALV +Y KCG+I  A ++F EM   + +++TA++ G A  GKA + I  F 
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +M+  GL PD +TF+G+LSAC   GLV++G  YF  M     + P   HY+CM+DL  RS
Sbjct: 470 KMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRS 529

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522
           G  +EAE+ I+ MP + D   W  L  +CRL GN+ IG+ AA  LLE DPQ+   YVLL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           +M+     W E   +R+ M +R V+K PGCS I+    ++ F   D+SHP   +IY+ L
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 199/407 (48%), Gaps = 38/407 (9%)

Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNL----------------------------- 145
           ++ N ++  +   G L  A  VFDE    NL                             
Sbjct: 49  FLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPER 108

Query: 146 --VSWNSLINGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
             VS+N+LI GF  +G P  +++L+R  ++ E V P  +T+  M+   + L D  LG  +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           H  +   G      + + L+DMY K G +  A  +F  M  KTVV   T+I G  +   +
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
           + A+ +F  + ++  + W  ++ G  Q     EAL +F  M+A G+  D  T    L+AC
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288

Query: 323 SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
             L A ++G  IH +I +  +  NV +G+ALVDMY+KC +I  A  VF  M  RN +++T
Sbjct: 289 GALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY--FAQMS 440
           A+I G   +  + +A+  FSEM   G+ PD+ T   ++S+C +   ++EG ++   A +S
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            + R    +   + +V L G+ G +E+A +L   M    D V W AL
Sbjct: 409 GLMRY---ITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTAL 451



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 37/326 (11%)

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           L N L+  Y K G+L  A  +FD M +  + +   ++   A    +    ++F  +PE+ 
Sbjct: 50  LLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERD 109

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHE-MQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            V +NA+I G+        ++ L+   ++   ++P  +T    +   S L     G  +H
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--------------------- 374
             + +  F     +G+ LVDMYAK G I  A +VF EM                      
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 375 ----------ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
                     +R+S+T+T ++ GL  +G  L+A+  F  M   G+  D+ TF  IL+AC 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
                +EG++  A ++  +     +   S +VD+  +   +  AE + R M    +++ W
Sbjct: 290 ALAASEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRM-TCRNIISW 347

Query: 485 GALFFACRLHGNVSIGERAAMKLLEL 510
            A+      +G  +  E A     E+
Sbjct: 348 TAMIVG---YGQNACSEEAVRAFSEM 370


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 293/541 (54%), Gaps = 32/541 (5%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SW   I GF + G   EA+  +++ML     +P+ F +   F  C+ L     G +I G 
Sbjct: 267 SWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGL 326

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            +K G   D++   ++  ++  CG L  A  VF      +LV+WN++I GF      +E+
Sbjct: 327 CIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKES 386

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
              F  M+   + P++VT++ ++ AC++   LN G ++H YI + G  L +P+ N+L+ M
Sbjct: 387 SSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSM 446

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWNAI 283
           Y KC  L                                 A ++F+D+  K  +V WN +
Sbjct: 447 YSKCSNLND-------------------------------ALQVFEDIGNKADIVSWNTL 475

Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343
           +   +Q  ++ E L L   M A+ IKPD VT  + L +  Q+ + + G  IH FI K   
Sbjct: 476 LTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535

Query: 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403
           NL++ +  AL++MY KCG++  A ++F  +   + ++++++I G A  G   +A   F  
Sbjct: 536 NLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRT 595

Query: 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463
           M G+G+ P+EITF+GIL+AC H G+V+EG K +  M   +R+SP  +H SCMVDLL R+G
Sbjct: 596 MRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAG 655

Query: 464 LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523
            L+ AE  I+ MP   DVVVW  L  AC++HGN+ +G+RAA  +L++DP +S   V+L N
Sbjct: 656 CLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCN 715

Query: 524 MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583
           ++  S  W++  ++R  M    V K PG S IE+   ++ F+  D  HPE  +IY  L +
Sbjct: 716 IHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTMLEE 775

Query: 584 L 584
           L
Sbjct: 776 L 776



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/510 (28%), Positives = 244/510 (47%), Gaps = 47/510 (9%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  SW   I G+   G+   A+ LY QMLR+G   PD+FT+  + K C+ L    L  ++
Sbjct: 163 NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI-PDHFTFGSIVKSCSGLDDFKLARQL 221

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             HVLK  F  D+   NA+I ++     +  A NVF    +++L+SW S+I GF + G+ 
Sbjct: 222 HAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281

Query: 162 REAIRLFRDMQLERV-EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
            EA+  FR+M  + V +P+E       SAC++L + + GR+IH    + GL   +    +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           L DMY KCG LESA                               R +F  + +  +V W
Sbjct: 342 LCDMYAKCGFLESA-------------------------------RTVFYHIEKPDLVAW 370

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           NAII G+     +KE+ + F +M+ TG+ P+ VT +  L ACS+   L+ GI +H +I K
Sbjct: 371 NAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVK 430

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-TYTAIIGGLALHGKALDAIS 399
             FNL++ +  +L+ MY+KC N+  ALQVF ++  +  + ++  ++       +A + + 
Sbjct: 431 MGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLR 490

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK-YFAQMSSIFRLSPKLKHYSCMVDL 458
               M    + PD +T   +L +       + G + +   M S   L   +   + ++++
Sbjct: 491 LTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVS--NALINM 548

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA-----AMKLLELDPQ 513
             + G LE A ++  S+    D++ W +L      +     G+ A      M+ L + P 
Sbjct: 549 YTKCGSLECARKMFDSIG-NPDIISWSSLIVG---YAQAGCGKEAFELFRTMRGLGVKPN 604

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           +   +V +        M EE  K+ + M+E
Sbjct: 605 EI-TFVGILTACSHIGMVEEGLKLYRTMQE 633



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 206/435 (47%), Gaps = 37/435 (8%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           REA+  +    +   +   + TY  L   C+SL     G +I  H+L   +  DM + N 
Sbjct: 79  REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD 179
           ++ ++  CG L  A N+FD   ++N+VSW S+I+G+ R G    AI L+  M      PD
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239
             T   +V +C+ L+D  L R++H ++ +S     +   NAL+ MY K  ++  A  +F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
            ++ K ++S  +MI G+++ G+                                 EAL  
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGY-------------------------------ELEALCH 287

Query: 300 FHEMQATGI-KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
           F EM +  + +P+        SACS+L   D G  IH    K     ++  G +L DMYA
Sbjct: 288 FREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYA 347

Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
           KCG +  A  VF+ + + + + + AII G A    A ++ S+FS+M   GL+P+++T L 
Sbjct: 348 KCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLS 407

Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSC--MVDLLGRSGLLEEAEQLIRSMP 476
           +L AC    +++ G +     S I ++   L    C  ++ +  +   L +A Q+   + 
Sbjct: 408 LLCACSEPVMLNHGIQVH---SYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIG 464

Query: 477 MAADVVVWGALFFAC 491
             AD+V W  L  AC
Sbjct: 465 NKADIVSWNTLLTAC 479



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 198/369 (53%), Gaps = 37/369 (10%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           L+    + ++++ P+  +WN  I GF      +E+   + QM R+ G  P++ T   L  
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQM-RHTGLVPNDVTVLSLLC 410

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-NLV 146
            C+   +   G ++  +++K+GF++D+ V N+++ ++  C +L  A  VF++   + ++V
Sbjct: 411 ACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIV 470

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           SWN+L+   ++     E +RL + M   R++PD VT+  ++ +  Q+    +G +IH +I
Sbjct: 471 SWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFI 530

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
            +SGL L + ++NAL++MY KCG LE A ++FDS+ N  ++S +++IVGYA         
Sbjct: 531 MKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYA--------- 581

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
                                 QA   KEA  LF  M+  G+KP+ +T V  L+ACS +G
Sbjct: 582 ----------------------QAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIG 619

Query: 327 ALDDGIWIHRFIEKENFNLNVVLG--TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTA 383
            +++G+ ++R ++ E++ ++      + +VD+ A+ G +  A     +MP   + + +  
Sbjct: 620 MVEEGLKLYRTMQ-EDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKT 678

Query: 384 IIGGLALHG 392
           ++    +HG
Sbjct: 679 LLAACKVHG 687


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 176/441 (39%), Positives = 263/441 (59%), Gaps = 34/441 (7%)

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           VSW +LI  ++ +G   EAI + R      + PD  T + +++ACA++ DL  G  + W 
Sbjct: 7   VSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAV-WA 65

Query: 206 IS--ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
            +  E G+  +V +A A +D+YVKCG++E A                             
Sbjct: 66  AARQEEGVAESVFVATAALDLYVKCGEMEKA----------------------------- 96

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
             R +FD++  +  V W A++GGY      +EAL LF  MQ  G KPD  T V  LSAC+
Sbjct: 97  --RSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACT 154

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           +LGALD G      +  +    N VLGTAL+DMYAKCG+ ++A  VF +M ER+ + + A
Sbjct: 155 RLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNA 214

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I GL + G    A +   +M   G+  ++ TF+G+L +C H GLV++GR+YF  M+ ++
Sbjct: 215 MILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVY 274

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
           R+SP+++HY CMVDL  R+GLLEEA QLI  MPM A+ VVWGAL   C++H N  + E A
Sbjct: 275 RISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHA 334

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
             +L+ L+P +SG YV+L+N+Y +S  WE+A K+R  M+ +G+EK P  S +E++G +++
Sbjct: 335 LKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHK 394

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F V D SHP  ++IY  L +L
Sbjct: 395 FYVGDDSHPLSDKIYAKLDEL 415



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 45/363 (12%)

Query: 40  NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99
           +P++ SW   I  +++ G   EA+ + ++   +G  RPD+FT   +   CA +     G 
Sbjct: 3   HPSTVSWTALIAAYMDAGHALEAIGVARRAFASG-MRPDSFTAVRVLTACARVADLETGE 61

Query: 100 EIFGHVLKL-GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
            ++    +  G    ++V  A + ++V CG++  A +VFDE   R+ V+W +++ G+  +
Sbjct: 62  AVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASN 121

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE----IHWYISESGLTLT 214
           G PREA+ LF  MQ+E  +PD  T++G +SAC +L  L+LGR+    +HW        L 
Sbjct: 122 GHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHW-----DEVLG 176

Query: 215 VP-LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLP 273
            P L  AL+DMY KCG    A  +F  M+ + ++                          
Sbjct: 177 NPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIV------------------------- 211

Query: 274 EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-I 332
                 WNA+I G       K A AL  +M+ +G+K +  T +  L +C+  G ++DG  
Sbjct: 212 ------WNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQ 265

Query: 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALH 391
           + H        +  +     +VD++++ G + +A Q+  +MP   N++ + A++GG  +H
Sbjct: 266 YFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325

Query: 392 GKA 394
             A
Sbjct: 326 RNA 328



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
           +P    V W A+I  Y+ A  + EA+ +     A+G++PD+ T V  L+AC+++  L+ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 332 --IWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
             +W     ++E    +V + TA +D+Y KCG + KA  VF EM  R+++ + A++GG A
Sbjct: 61  EAVWAAAR-QEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL-SPK 448
            +G   +A+  F  M   G  PD  T +G LSAC   G +D GR+    +     L +P 
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPV 179

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
           L   + ++D+  + G   EA  + + M +  D++VW A+     + G+  I 
Sbjct: 180 LG--TALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMILGLGMTGHEKIA 228



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 17/312 (5%)

Query: 10  GFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLY 66
           G A S  +A  A+    +   ++    +   ++N ++ +W   + G+   G  REA+DL+
Sbjct: 72  GVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLF 131

Query: 67  KQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126
             M +  G +PD +T       C  LG   LG +  G V       +  +  A+I ++  
Sbjct: 132 FAM-QMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAK 190

Query: 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186
           CG    A  VF +   R+++ WN++I G   +G  + A  L   M+   V+ ++ T IG+
Sbjct: 191 CGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGL 250

Query: 187 VSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNK 244
           + +C     +N GR+  H       ++  +     ++D++ + G LE A ++   M +  
Sbjct: 251 LCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLA 310

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV-------QAKRSKEAL 297
             V    ++ G       D+A      L    + PWN+  G YV        + R ++A 
Sbjct: 311 NAVVWGALLGGCKIHRNADLAEHALKQLIR--LEPWNS--GNYVMLSNIYSNSGRWEDAA 366

Query: 298 ALFHEMQATGIK 309
            L  EM+A GI+
Sbjct: 367 KLRLEMKAKGIE 378


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 325/665 (48%), Gaps = 97/665 (14%)

Query: 17  IAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTR 76
           IA    ++   LD   ++   +      SWN  I  + + G+  EA+ L   M R+    
Sbjct: 77  IAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKL 136

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA--- 133
            ++ T+  +  VCA L     G  I   VLK G +    V +A+++ + SC ++G A   
Sbjct: 137 SES-TFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRV 195

Query: 134 ---------------------CNVFDESCV-------RNLVSWNSLINGFVRSGFP-REA 164
                                CNV D++         R++V+W +LI+GF ++G    +A
Sbjct: 196 FDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKA 255

Query: 165 IRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223
           + +FR M       P+E T   +V AC +L  L++GR +H  + + GL     +  AL++
Sbjct: 256 LEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVE 315

Query: 224 MYVKC-------------------------------GKLESAEEIFDSMVNKTVVSCTTM 252
            Y +C                               G++E AE +F+ M     VS   M
Sbjct: 316 FYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLM 375

Query: 253 IVGYAKFGFLDIARKIFDDLP--------------------------------EKYVVPW 280
           I GYA  G +D ++++F+ +P                                EK  V W
Sbjct: 376 IKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTW 435

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
           N++I GY+ + + +EAL L+  M    I+    T      ACS LG+L  G  +H  + K
Sbjct: 436 NSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIK 495

Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
             F  NV +GT+L+DMY+KCG+I +A   F  +   N   +TA+I G A HG   +AIS 
Sbjct: 496 TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISL 555

Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
           F  MI  GL P+  TF+G+LSAC   GLV+EG K F  M   + ++P L+HY+C+VDLLG
Sbjct: 556 FDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLG 615

Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
           RSG + EAE+ I+ MP+ AD VVWGAL  AC    ++ +GER A K+   DP+    YV+
Sbjct: 616 RSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVI 675

Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDC 580
           L+N+Y     W E   VRK++    V+K PGCS IE+N  ++ F + D+SHP    IY  
Sbjct: 676 LSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYAT 735

Query: 581 LVQLT 585
           L  LT
Sbjct: 736 LEHLT 740



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 19/376 (5%)

Query: 118 NAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177
           N  I  +     L +A  +FD+   R +VSWN++I+ + + G   EA+ L   M    ++
Sbjct: 76  NIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMK 135

Query: 178 PDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237
             E T   ++S CA+L  L  G+ IH  + +SG      + +AL+  Y  C ++  A  +
Sbjct: 136 LSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRV 195

Query: 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ-AKRSKEA 296
           FD +V +  V  + M+VGY     +D A  +F  +P + VV W  +I G+ +      +A
Sbjct: 196 FDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKA 255

Query: 297 LALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
           L +F  M  +G   P+  T    + AC +LG L  G  +H  + K     +  +G ALV+
Sbjct: 256 LEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVE 315

Query: 356 MYAKCGNIAKALQVFHEM--PERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413
            Y +C  I  AL+V   +  P  N+L   ++I GL   G+  DA   F+ M  +    + 
Sbjct: 316 FYCECEAIDDALRVCKGVVNPCLNAL--NSLIEGLISMGRIEDAELVFNGMTEM----NP 369

Query: 414 ITFLGILSACCHGGLVDEGRKYFAQMS--SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471
           +++  ++     GG +D+ ++ F +M   +IF         + M+ +  R+G +++A +L
Sbjct: 370 VSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFS-------SNTMISVYSRNGEIDKALEL 422

Query: 472 IRSMPMAADVVVWGAL 487
                   D V W ++
Sbjct: 423 FEETKNEKDPVTWNSM 438



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 33/221 (14%)

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           ++S    I  YAK   LD+AR++FD +P++ VV WN +I  Y +  R  EAL L + M  
Sbjct: 72  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 131

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           + +K    T    LS C++L  L DG  IH  + K       ++G+AL+  YA C  I +
Sbjct: 132 SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 191

Query: 366 -------------------------------ALQVFHEMPERNSLTYTAIIGGLALHGKA 394
                                          AL VF +MP R+ + +T +I G + +G  
Sbjct: 192 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 251

Query: 395 L-DAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGR 433
              A+  F  M+  G   P+E TF  ++ AC   G++  GR
Sbjct: 252 CGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGR 292


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 312/583 (53%), Gaps = 34/583 (5%)

Query: 39  QNPNSFSWNVA--IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL--------FK- 87
           Q P+S    +A  +      G++ EA+    ++ + G   P      LL        FK 
Sbjct: 21  QRPDSTGLCIAQSLLDLSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKG 80

Query: 88  -VCASLGLRFLGYE---------IFGHVLKLGFDVD------------MYVHNAVIHVFV 125
             C  L L+  G++         + G   + G DV+            +Y  N ++  + 
Sbjct: 81  GKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYA 140

Query: 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185
             GD+  A  +FD    +++VSWN+++  + + G   EAI L+RD +   +  +  +  G
Sbjct: 141 KLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAG 200

Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245
           ++  C +L++L L +++H  +  +G    + L+++++D Y KCG++  A  +FD M+ K 
Sbjct: 201 VLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKD 260

Query: 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305
           + + TT++ GYAK+G ++ A ++F  +PEK  V W+A+I GY +     EAL  F +M  
Sbjct: 261 IHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK 320

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            GI P+  T   CL AC+ + AL  G  +H ++ +  F  N ++ ++L+DMY+KCG +  
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEA 380

Query: 366 ALQVFHEMPERNS-LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           +  VFH M  +   + +  +I  LA +G    A+  F++M+  GL PD ITF+ ILSAC 
Sbjct: 381 SCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACS 440

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           H GLV EG ++F  M+    + P  +HY+C++DLLGR+G   E    + +M    D  VW
Sbjct: 441 HSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVW 500

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL   CR+H N+ +G + A +++EL PQ S  YV LA++Y     WE   KVR++M+E+
Sbjct: 501 SALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEK 560

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
            + K  G S I+V    + FI  D+ HP  E+IY  L QL RH
Sbjct: 561 FIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARH 603



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 174/402 (43%), Gaps = 72/402 (17%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           +++   K+   +   +  SWN  +  + + G   EA+ LY+   R      + F++  + 
Sbjct: 144 DVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRD-FRRLDMGFNAFSFAGVL 202

Query: 87  KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV---- 142
            +C  L    L  ++ G VL  GF  ++ + ++++  +  CG++  A  +FDE  V    
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIH 262

Query: 143 ---------------------------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLER 175
                                      +N VSW++LI+G+ R+    EA+  F  M    
Sbjct: 263 AWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFG 322

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           + P++ T    + ACA +  L  G+++H Y+  +       + ++L+DMY KCG LE++ 
Sbjct: 323 INPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASC 382

Query: 236 EIFDSMVNKT-VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
            +F  M NK  VV   TMI   A+ G                                 +
Sbjct: 383 CVFHLMGNKQDVVVWNTMISALAQNG-------------------------------HGE 411

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLG---- 350
           +A+ +F++M  +G+KPD +T +  LSACS  G + +G+   RF +   ++  V       
Sbjct: 412 KAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGL---RFFKAMTYDHGVFPDQEHY 468

Query: 351 TALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
             L+D+  + G   + +     M  + +   ++A++G   +H
Sbjct: 469 ACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 207/621 (33%), Positives = 335/621 (53%), Gaps = 61/621 (9%)

Query: 16  LIAFCAISESKNLDYCTKILFN---VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN 72
           + A+CA+    NL+   +I FN   +   +S  +N  I G+   G    A++L++ M R+
Sbjct: 86  ITAYCALG---NLELGREI-FNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD 141

Query: 73  GGTRPDNFTYPLLFKVCASLGLRFLGYE-----IFGHVLKLGFD-VDMYVHNAVIHVFVS 126
              RPD+FT+     V ++L L F+G E     +   V+K G   V   V NA++ V+V 
Sbjct: 142 D-FRPDDFTFT---SVLSALVL-FVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVK 196

Query: 127 -CGDLGLACN-------VFDE------------------------------SCVRNL-VS 147
              +LG+ C+       +FDE                              + V NL  +
Sbjct: 197 RASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA 256

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
           WN++I+G+V  G  +EA+ L R M+   ++ D++T   ++SACA +    +G+++H YI 
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYIL 316

Query: 208 ESGL----TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263
           ++ L    +  + ++NAL+ +Y K  K++ A +IF +M  + +++   ++ GY   G ++
Sbjct: 317 KNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRME 376

Query: 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS 323
            A+  F+++P K ++    +I G  Q     E L LF +M+  G +P        L+ACS
Sbjct: 377 EAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACS 436

Query: 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
            LGAL++G  +H  +    +  ++ +G A++ MYAKCG +  A  VF  MP  + +++ +
Sbjct: 437 VLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNS 496

Query: 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443
           +I  L  HG  + AI  F +M+  G+ PD ITFL +L+AC H GLV++GR YF  M   +
Sbjct: 497 MIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESY 556

Query: 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503
            ++P   HY+ MVDL  R+G+   A  +I SMP      VW AL   CR+HGN+ +G  A
Sbjct: 557 GITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEA 616

Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYE 563
           A +L +L PQ+ G YVLL+N+Y D   W +  KVRK+M ++ V K P CS IEV   ++ 
Sbjct: 617 AEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHV 676

Query: 564 FIVRDKSHPELEQIYDCLVQL 584
           F+V D  HPE+  +Y  L QL
Sbjct: 677 FMVDDDVHPEVLSVYRYLEQL 697



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 245/519 (47%), Gaps = 78/519 (15%)

Query: 30  YCTKI-LFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
           Y  K+ L + Q+P SFS   A+               +  M+ +G     +F   LL   
Sbjct: 14  YAEKLQLCSPQDPASFSLARAV---------------HAHMIASGFKPRGHFLNRLLEMY 58

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLV 146
           C S  + +   ++F  +     + D      +I  + + G+L L   +F+ + +  R+ V
Sbjct: 59  CKSSNVVY-ARQLFEEIP----NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 147 SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE----- 201
            +N++I G+  +G    A+ LFR M+ +   PD+ T   ++SA      L +G E     
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALV----LFVGNEQQCGQ 169

Query: 202 IHWYISESGL-TLTVPLANALMDMYVK--------CGKLESAEEIFDSMVNKTVVSCTTM 252
           +H  + ++G+  ++  + NAL+ +YVK        C  + SA ++FD M  +  ++ TTM
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTM 229

Query: 253 IVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
           I GY +   L+ AR++F+ + E     WNA+I GYV     +EAL L  +M+  GI+ D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN----VVLGTALVDMYAKCGNIAKALQ 368
           +T    +SAC+ +G+   G  +H +I K   N N    + +  AL+ +Y K   + +A +
Sbjct: 290 ITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM------------------ 410
           +F+ MP RN +T+ AI+ G    G+  +A S+F EM    L+                  
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEG 409

Query: 411 -------------PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
                        P +  F G L+AC   G ++ GR+  AQ+  +   S  L   + M+ 
Sbjct: 410 LKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYES-SLSVGNAMIS 468

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
           +  + G++E AE +  +MP + D+V W ++  A   HG+
Sbjct: 469 MYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGH 506



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 174/401 (43%), Gaps = 56/401 (13%)

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
            +L R +H ++  SG        N L++MY K   +  A ++F+ + N   ++ TT+I  
Sbjct: 29  FSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITA 88

Query: 256 YAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313
           Y   G L++ R+IF+  P   +  V +NA+I GY        AL LF  M+    +PD  
Sbjct: 89  YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDF 148

Query: 314 TTVHCLSACSQ-LGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAK--------CGNI 363
           T    LSA    +G       +H  + K     ++  +  AL+ +Y K        C  +
Sbjct: 149 TFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAM 208

Query: 364 AKALQVFHEMPERNSLTYT-------------------------------AIIGGLALHG 392
             A ++F EMP+R+ LT+T                               A+I G    G
Sbjct: 209 VSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCG 268

Query: 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---- 448
              +A++   +M  +G+  D+IT+  I+SAC + G    G++  A +     L+P     
Sbjct: 269 CFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK-NELNPNHSFC 327

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG--ERAAMK 506
           L   + ++ L  ++  ++EA ++  +MP+  +++ W A+     L G V+ G  E A   
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPV-RNIITWNAI-----LSGYVNAGRMEEAKSF 381

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             E+  ++     ++ +    +   +E  K+ K M   G E
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 178/527 (33%), Positives = 296/527 (56%), Gaps = 14/527 (2%)

Query: 37  NVQNPNSFSWN-VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR 95
           ++  P+ F+WN + I   L +     AV L+     +    PD  T   L +  A+ G  
Sbjct: 74  SIPQPSLFAWNAILISLSLHSPDPSAAVRLFA----SSAVSPDEITLSTLLRSLAASGPA 129

Query: 96  F---LGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
               +  E+       GF  D++V NA+I  + + GD+  A  VFDE   R++VSWNSLI
Sbjct: 130 LSPLVTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLI 189

Query: 153 NGFVRSGFPREAIRLFRDMQLER------VEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206
           +   R+G+ RE + LF++    R      V P+ VT+  ++ ACAQL+ ++ G  +H + 
Sbjct: 190 SACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFA 249

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
           +ESGL + + + N+++  Y KCG+L+ A ++ D M  K  +S + MI GY   G ++   
Sbjct: 250 AESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGM 309

Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
           ++F     + +  WN++I G VQ  R  + L L  EM A+ + P++ T    + +     
Sbjct: 310 QLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFS 369

Query: 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
            L      H +  + +++ ++ L +AL+D YAK G +  A +VF     R+++ +T+II 
Sbjct: 370 TLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRSTIVWTSIIS 429

Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
            +A HG+A++A+S F++MI  G  PD +TF  +LSAC H G V E RK F  M ++F +S
Sbjct: 430 AVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEARKVFNSMQAVFGIS 489

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
           P ++ Y+CMV  L R+G+L+EA +L+  MP   +  VWGAL     + G+V  G  A  +
Sbjct: 490 PVIEQYACMVSALSRAGMLKEAVKLVNKMPFEPNAKVWGALLNGAAVVGDVEFGRYAFDR 549

Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553
           L  ++P+++G Y+++AN+Y ++  WEEA  +R M+   G+EK PGC+
Sbjct: 550 LFVIEPKNTGNYIVMANLYSNAGKWEEAETIRSMLWGVGLEKVPGCT 596



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 192/462 (41%), Gaps = 81/462 (17%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           PD   Y  L ++CA  G      +I   ++        ++ + +I ++     L  A  V
Sbjct: 12  PDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRDARRV 71

Query: 137 FDESCVRNLVSWNS-LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA---- 191
           FD     +L +WN+ LI+  + S  P  A+RLF       V PDE+T+  ++ + A    
Sbjct: 72  FDSIPQPSLFAWNAILISLSLHSPDPSAAVRLFAS---SAVSPDEITLSTLLRSLAASGP 128

Query: 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
            L  L  G E+H      G    + ++NAL+  Y   G + SA  +FD M  + VVS   
Sbjct: 129 ALSPLVTG-ELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVS--- 184

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM------QA 305
                                       WN++I    +A   +E L LF E         
Sbjct: 185 ----------------------------WNSLISACARAGWYRECLDLFQEFVRVRCSDG 216

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
            G+ P+ VT    L AC+QL  +D GI +HRF  +   ++++ +  +++  YAKCG +  
Sbjct: 217 DGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQY 276

Query: 366 ALQVFHEMPERNSLTYTA-------------------------------IIGGLALHGKA 394
           A Q+   M  ++S++Y+A                               +I GL  +G+ 
Sbjct: 277 ARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQ 336

Query: 395 LDAISYFSEMIGVGLMPDEITFLGIL-SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
            D +    EMI   ++P+  T   ++ S      L+   + +   + + +  S +L   S
Sbjct: 337 SDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRL--VS 394

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            ++D   ++G L+ A ++ + +      +VW ++  A   HG
Sbjct: 395 ALIDAYAKAGFLDTARKVFK-LTEHRSTIVWTSIISAVAAHG 435



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 5/192 (2%)

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           T + PD     H +  C++ G L     IH  +   +   +  L + L+ +Y++   +  
Sbjct: 8   TAVPPDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRD 67

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
           A +VF  +P+ +   + AI+  L+LH    D  +         + PDEIT   +L +   
Sbjct: 68  ARRVFDSIPQPSLFAWNAILISLSLHSP--DPSAAVRLFASSAVSPDEITLSTLLRSLAA 125

Query: 426 GG--LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            G  L          ++ +      L   + ++     +G +  A  +   MP   DVV 
Sbjct: 126 SGPALSPLVTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPR-RDVVS 184

Query: 484 WGALFFACRLHG 495
           W +L  AC   G
Sbjct: 185 WNSLISACARAG 196


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/522 (37%), Positives = 291/522 (55%), Gaps = 46/522 (8%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V  P ++ WN  I+G+       E V L  +M+R G  RPD +T+PL+ KVC++     +
Sbjct: 66  VPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRV 125

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  + G VL++GFD D+ +  + +  +  C DL  A  VF E   RN+VSW +LI  +V+
Sbjct: 126 GSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVK 185

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           SG   EA R+F D+  ER                     NLG    W             
Sbjct: 186 SGELEEAKRMF-DLMPER---------------------NLGT---W------------- 207

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            NAL+D  VK G L +A ++FD M  + ++S T+MI GYAK G +  AR +F++     V
Sbjct: 208 -NALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFENARGVDV 266

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD----DGIW 333
             W+A+I GY Q  +  EA  +F EM A  +KPD    V  +SACSQ+G  +       +
Sbjct: 267 RAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSY 326

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H+ + K  F+ + V+  AL+DM AKCG++ +A ++F EMP+R+ ++Y +++ G+A+HG 
Sbjct: 327 LHQSMNK--FSSHYVI-PALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGC 383

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +A+  F +M+  G++PDE+ F  IL  C    LV+EG +YF  M   + +     HYS
Sbjct: 384 GSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSILASPDHYS 443

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           C+V+LL R+G L+EA +LI+SMP  A    WG+L   C LHGN  I E  A +L EL+PQ
Sbjct: 444 CIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARQLFELEPQ 503

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
            +G YVLL+N+Y   + W +   +R  M E G++K  G S I
Sbjct: 504 SAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRSWI 545


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/522 (37%), Positives = 290/522 (55%), Gaps = 46/522 (8%)

Query: 38  VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
           V +P ++ WN  I+G+       E V +  +M+R G  RPD +T+PL+ KVC++ G   +
Sbjct: 69  VPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRV 128

Query: 98  GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
           G  + G VL++GFD D+ V  + +  +  C DL  A  VF E   RN VSW +L+  +V+
Sbjct: 129 GSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVK 188

Query: 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217
           SG   EA  +F D+  ER                     NLG    W             
Sbjct: 189 SGELEEAKSMF-DLMPER---------------------NLG---SW------------- 210

Query: 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
            NAL+D  VK G L +A+++FD M  + ++S T+MI GYAK G +  AR +F++     V
Sbjct: 211 -NALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDV 269

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD----DGIW 333
             W+A+I GY Q  +  EA  +F EM A  +KPD    V  +SACSQ+G  +       +
Sbjct: 270 RAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSY 329

Query: 334 IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGK 393
           +H+ + K  F+ + V+  AL+DM AKCG++ +A ++F EMP+R+ ++Y +++ G+A+HG 
Sbjct: 330 LHQRMNK--FSSHYVV-PALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGC 386

Query: 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453
             +AI  F +M+  G++PDE+ F  IL  C    LV+EG +YF  M   + +     HYS
Sbjct: 387 GSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYS 446

Query: 454 CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
           C+V+LL R+G L+EA +LI+SMP  A    WG+L   C LHGN  I E  A  L EL+PQ
Sbjct: 447 CIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQ 506

Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
            +G YVLL+N+Y   + W +   +R  M E G+ K  G S I
Sbjct: 507 SAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 176/542 (32%), Positives = 300/542 (55%), Gaps = 33/542 (6%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  + G ++     +A++ ++ M +N G +PD  +   L       G    G E+  +
Sbjct: 316 SWNTLLSGLVQNELYSDALNYFRDM-QNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAY 374

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
            ++ G D +M + N ++ ++  C  +    + F+    ++L+SW ++I G+ ++ F  EA
Sbjct: 375 AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEA 434

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
           I LFR +Q++ ++ D + +  ++ AC+ L+  N  REIH Y+ +  L   + L NA++++
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNV 493

Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
           Y                                + G +D AR+ F+ +  K +V W ++I
Sbjct: 494 Y-------------------------------GEVGHIDYARRAFESIRSKDIVSWTSMI 522

Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
              V      EAL LF+ ++ T I+PD++  +  LSA + L +L  G  IH F+ ++ F 
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFF 582

Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
           L   + ++LVDMYA CG +  + ++FH + +R+ + +T++I    +HG    AI+ F +M
Sbjct: 583 LEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKM 642

Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
               ++PD ITFL +L AC H GL+ EG+++F  M   ++L P  +HY+CMVDLL RS  
Sbjct: 643 TDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNS 702

Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
           LEEA   +R+MP+     +W AL  AC +H N  +GE AA +LL+ D ++SG Y L++N+
Sbjct: 703 LEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNI 762

Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           +     W +  +VR  M+  G++K PGCS IEV+  ++ F+ RDKSHP+ + IY  L Q 
Sbjct: 763 FAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQF 822

Query: 585 TR 586
           T+
Sbjct: 823 TK 824



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 231/467 (49%), Gaps = 41/467 (8%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +     FSWN  +  F+ +GK  EA++LYK M R  G   D  T+P + K C +L
Sbjct: 100 KVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDM-RVLGVAIDACTFPSVLKACGAL 158

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNS 150
           G   LG EI G  +K G+   ++V NA+I ++  CGDLG A  +FD   +   + VSWNS
Sbjct: 159 GESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNS 218

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I+  V  G   EA+ LFR MQ   V  +  T +  +        + LG  IH  + +S 
Sbjct: 219 IISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSN 278

Query: 211 LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
               V +ANAL+ MY KCG++E A  +F+SM+ +  VS                      
Sbjct: 279 HFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVS---------------------- 316

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                    WN ++ G VQ +   +AL  F +MQ +G KPD V+ ++ ++A  + G L  
Sbjct: 317 ---------WNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLK 367

Query: 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390
           G  +H +  +   + N+ +G  LVDMYAKC  +      F  M E++ +++T II G A 
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQ 427

Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS-IFRLS-PK 448
           +   L+AI+ F ++   G+  D +    +L AC   GL  + R +  ++   +F+     
Sbjct: 428 NEFHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGL--KSRNFIREIHGYVFKRDLAD 483

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           +   + +V++ G  G ++ A +   S+  + D+V W ++   C  +G
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESI-RSKDIVSWTSMITCCVHNG 529



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 229/469 (48%), Gaps = 42/469 (8%)

Query: 32  TKILFN---VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88
            ++LF+   ++  ++ SWN  I   +  G   EA+ L+++M +  G   + +T+    + 
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRM-QEVGVASNTYTFVAALQG 257

Query: 89  CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSW 148
                   LG  I G VLK     D+YV NA+I ++  CG +  A  VF+    R+ VSW
Sbjct: 258 VEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSW 317

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
           N+L++G V++    +A+  FRDMQ    +PD+V+++ +++A  +  +L  G+E+H Y   
Sbjct: 318 NTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIR 377

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
           +GL   + + N L+DMY KC  ++     F+ M  K ++S TT+I GYA+  F       
Sbjct: 378 NGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEF------- 430

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
                                     EA+ LF ++Q  G+  D +     L ACS L + 
Sbjct: 431 ------------------------HLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSR 466

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           +    IH ++ K +   +++L  A+V++Y + G+I  A + F  +  ++ +++T++I   
Sbjct: 467 NFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCC 525

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY--FAQMSSIFRLS 446
             +G  ++A+  F  +    + PD I  +  LSA  +   + +G++   F      F   
Sbjct: 526 VHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEG 585

Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           P     S +VD+    G +E + ++  S+    D+++W ++  A  +HG
Sbjct: 586 PIA---SSLVDMYACCGTVENSRKMFHSVKQ-RDLILWTSMINANGMHG 630



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 170/357 (47%), Gaps = 31/357 (8%)

Query: 81  TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140
            + LL  +C +      G ++  H L L   +  ++   ++ ++  CG L  A  VFDE 
Sbjct: 48  AHSLLLDLCVAAKALPQGQQL--HALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEM 105

Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200
             R + SWN+L+  FV SG   EAI L++DM++  V  D  T   ++ AC  L +  LG 
Sbjct: 106 SERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGA 165

Query: 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260
           EIH    + G    V + NAL+ MY KCG L  A  +FD ++                  
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIM------------------ 207

Query: 261 FLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320
                      + ++  V WN+II  +V      EAL+LF  MQ  G+  +  T V  L 
Sbjct: 208 -----------MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQ 256

Query: 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
                  +  G+ IH  + K N   +V +  AL+ MYAKCG +  A +VF  M  R+ ++
Sbjct: 257 GVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVS 316

Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437
           +  ++ GL  +    DA++YF +M   G  PD+++ L +++A    G + +G++  A
Sbjct: 317 WNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHA 373



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 24  ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83
           E  ++DY  +   ++++ +  SW   I   +  G   EA++L+   L+    +PD+    
Sbjct: 496 EVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYS-LKQTNIQPDSIAII 554

Query: 84  LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143
                 A+L     G EI G +++ GF ++  + ++++ ++  CG +  +  +F     R
Sbjct: 555 SALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR 614

Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           +L+ W S+IN     G   +AI LF+ M  + V PD +T + ++ AC+ 
Sbjct: 615 DLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSH 663



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 16/185 (8%)

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           L  C    AL  G  +H  + K +  L+  L T LV MY KCG++  A++VF EM ER  
Sbjct: 53  LDLCVAAKALPQGQQLHALLLKSH--LSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTI 110

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
            ++ A++G     GK L+AI  + +M  +G+  D  TF  +L AC   G + E R     
Sbjct: 111 FSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKAC---GALGESR----L 163

Query: 439 MSSIFRLSPKLKH----YSC--MVDLLGRSGLLEEAEQLIRSMPM-AADVVVWGALFFAC 491
            + I  ++ K  +    + C  ++ + G+ G L  A  L   + M   D V W ++  A 
Sbjct: 164 GAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223

Query: 492 RLHGN 496
              GN
Sbjct: 224 VAEGN 228


>gi|414866221|tpg|DAA44778.1| TPA: hypothetical protein ZEAMMB73_421222 [Zea mays]
          Length = 595

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 306/558 (54%), Gaps = 14/558 (2%)

Query: 6   LISHGFAPSRLIAFCAIS---ESKNLDYCTKILFNVQNPNSFSWN-VAIRGFLETGKMRE 61
           L++    PS  +A   IS      +LD   ++   +  P+ F+WN + I   L +    +
Sbjct: 40  LVASSVTPSNFLASKLISLYSRGAHLDDARRVFDAIPRPSVFAWNAILIALSLHSADPSD 99

Query: 62  AVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRF--LGYEIFGHVLKLGFDVDMYVHNA 119
           A  L+       G  PD  T   L K  A  G R   L  E+    ++ GF  D++V N 
Sbjct: 100 AARLFAA----SGISPDEITLSALLKSLADSGPRLSALVAEVHAVAVQRGFGDDLFVSNG 155

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER---- 175
           +I  + + GD   A  VFDE   R++VSWNSLI+ + R+G+ R+ + LF+++        
Sbjct: 156 LITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARAGWYRQCLELFQELASVHGAGG 215

Query: 176 VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235
           V P+ VT+  ++ ACAQL+ ++ G  +H   +E+GL   + + N+ +  Y KCG+L+ A 
Sbjct: 216 VRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSDIAVWNSAVGFYAKCGRLKYAR 275

Query: 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKE 295
           E+FD M  K  VS +TMI GY   G +D+  ++F     + +  WNA+I G +Q  R  +
Sbjct: 276 ELFDGMAKKDAVSYSTMIAGYMNHGHVDMGLELFQRADVQGISIWNAVIAGLIQHGRQSD 335

Query: 296 ALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
            L L +EM  +G+ P++ T    + +      L      H +  + N++ ++ + TAL+D
Sbjct: 336 VLGLLNEMIGSGMLPNSATLSILIPSVHLFSTLLGVKQAHGYAIRNNYDQSIGVVTALID 395

Query: 356 MYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
            Y+K G +  + +VF    +R+ + +T+II  +A HG+A +A+  F+EM+  G+  D I 
Sbjct: 396 AYSKAGFLDGSRRVFKLTDDRSEIVWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIA 455

Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475
           F  +L+AC H G V + RK F  M ++F ++P ++ Y+CMV    R+G+L +A +L+ SM
Sbjct: 456 FTAVLTACAHTGKVADARKIFNSMQAMFGINPVMEQYACMVSAFSRAGMLNDALELVNSM 515

Query: 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535
           P   + +VWG L        NV +G     +L +++P+++G Y+++AN+Y ++  WEEA 
Sbjct: 516 PFEPNAMVWGPLLNGAAEFCNVELGRFVFDQLFKIEPKNTGNYIVMANLYSNAGKWEEAD 575

Query: 536 KVRKMMEERGVEKTPGCS 553
            +R+ M   G+EK PGCS
Sbjct: 576 IIRRRMWGVGLEKVPGCS 593



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 193/460 (41%), Gaps = 74/460 (16%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           PD   Y  L ++CA  G    G ++   ++        ++ + +I ++     L  A  V
Sbjct: 12  PDPRAYGHLIQLCADTGHLAAGRQLHARLVASSVTPSNFLASKLISLYSRGAHLDDARRV 71

Query: 137 FDESCVRNLVSWNS-LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           FD     ++ +WN+ LI   + S  P +A RLF       + PDE+T+  ++ + A    
Sbjct: 72  FDAIPRPSVFAWNAILIALSLHSADPSDAARLF---AASGISPDEITLSALLKSLADSGP 128

Query: 196 L--NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253
               L  E+H    + G    + ++N L+  Y   G   SA  +FD M  + VVS  ++I
Sbjct: 129 RLSALVAEVHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLI 188

Query: 254 VGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ----ATGIK 309
             YA+ G+                                ++ L LF E+     A G++
Sbjct: 189 SSYARAGWY-------------------------------RQCLELFQELASVHGAGGVR 217

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
           P+ VT    L AC+QL A+D G+ +HR   +   + ++ +  + V  YAKCG +  A ++
Sbjct: 218 PNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSDIAVWNSAVGFYAKCGRLKYAREL 277

Query: 370 FHEMPERNSLTYT-------------------------------AIIGGLALHGKALDAI 398
           F  M ++++++Y+                               A+I GL  HG+  D +
Sbjct: 278 FDGMAKKDAVSYSTMIAGYMNHGHVDMGLELFQRADVQGISIWNAVIAGLIQHGRQSDVL 337

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
              +EMIG G++P+  T L IL    H      G K     +        +   + ++D 
Sbjct: 338 GLLNEMIGSGMLPNSAT-LSILIPSVHLFSTLLGVKQAHGYAIRNNYDQSIGVVTALIDA 396

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
             ++G L+ + ++ +     ++ +VW ++  A   HG  +
Sbjct: 397 YSKAGFLDGSRRVFKLTDDRSE-IVWTSIISAVAAHGEAA 435



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365
           T + PD     H +  C+  G L  G  +H  +   +   +  L + L+ +Y++  ++  
Sbjct: 8   TAVPPDPRAYGHLIQLCADTGHLAAGRQLHARLVASSVTPSNFLASKLISLYSRGAHLDD 67

Query: 366 ALQVFHEMPERNSLTYTAIIGGLALH-GKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
           A +VF  +P  +   + AI+  L+LH     DA   F+     G+ PDEIT   +L +  
Sbjct: 68  ARRVFDAIPRPSVFAWNAILIALSLHSADPSDAARLFA---ASGISPDEITLSALLKS-- 122

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPK------LKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
              L D G +  A ++ +  ++ +      L   + ++     +G    A  +   MP  
Sbjct: 123 ---LADSGPRLSALVAEVHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDEMPR- 178

Query: 479 ADVVVWGAL 487
            DVV W +L
Sbjct: 179 RDVVSWNSL 187


>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 181/465 (38%), Positives = 273/465 (58%), Gaps = 5/465 (1%)

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
           G L  A  +F       +  +N++I   +  G    AI +F  +    + PD  T+  ++
Sbjct: 53  GSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVL 112

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            A A++ +++LG  IH    + G  +   + N+L+ MY     + SA ++FD M   + V
Sbjct: 113 KASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAV 172

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
           S T MI GYA  G +D AR++FD    K    W A+I GYVQ    KE L +F  MQ T 
Sbjct: 173 SWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTE 232

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
           ++PD    V  LSAC+ +GALD GIWIHR++ +    L + + T L+DMYAKCG++  A 
Sbjct: 233 VEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAK 292

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            +F+EM +R+++ + A+I G+A+ G    AI  F EM   G+ PD ITF+ +L+AC + G
Sbjct: 293 YLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSG 352

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA----DVVV 483
           +VDEG + + +MS++ ++ PK +HY C++DLL R G  EEAE +I+ +P  A    + V 
Sbjct: 353 MVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVA 412

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W A   AC  HG     E AA +L +L+ + SG YVLL+NMY      E+A +VR MM+ 
Sbjct: 413 WRAFLSACCKHGQTQQAEVAAERLFQLE-RHSGAYVLLSNMYAALGKHEDAKRVRNMMKL 471

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
           +GVEK PGCSSI+VNG++ EFI  +K+H  ++ I+  L +L +  
Sbjct: 472 KGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNKQI 516



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 207/437 (47%), Gaps = 81/437 (18%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +GL +  F  SRL+ FCA S + +L +  K+  ++Q+P    +N  I+  L  G+   A+
Sbjct: 31  SGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAI 90

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV--- 120
            ++  + RNG   PD +T P + K  A +    LG  I    +KLG  V+ +V N++   
Sbjct: 91  AVFSAIFRNG-IHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVM 149

Query: 121 ----------------------------IHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
                                       I+ + + GD+  A  +FD + V++   W ++I
Sbjct: 150 YRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMI 209

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
           +G+V++   +E + +FR MQL  VEPDE  ++ ++SACA +  L+ G  IH Y+   GL 
Sbjct: 210 SGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLP 269

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
           LT+ ++  L+DMY KCG L+ A+ +F+ M                               
Sbjct: 270 LTLRVSTGLIDMYAKCGHLDLAKYLFNEM------------------------------- 298

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG- 331
            ++  V WNA+I G       + A+ LF EM+  GIKPD +T +  L+ACS  G +D+G 
Sbjct: 299 SQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGI 358

Query: 332 -IW-----IHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS-----LT 380
            IW     +H+ IE ++ +   V     +D+ ++ G   +A  V   +P+  S     + 
Sbjct: 359 RIWNRMSTVHK-IEPKSEHYGCV-----IDLLSRVGRFEEAEGVIQRLPKTASPSEEAVA 412

Query: 381 YTAIIGGLALHGKALDA 397
           + A +     HG+   A
Sbjct: 413 WRAFLSACCKHGQTQQA 429


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 194/587 (33%), Positives = 309/587 (52%), Gaps = 74/587 (12%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  +  +++ G    A+ ++++M  + G RPD  +   +   CAS+G    G ++ G+
Sbjct: 216 SWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGY 275

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF--------- 155
            L+ G   D++V NAV+ ++  CG +  A  VF+   V+++VSWN+++ G+         
Sbjct: 276 ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDA 335

Query: 156 --------------------------VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
                                      + G   EA+ +FR M L   EP+ VT++ ++S 
Sbjct: 336 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSG 395

Query: 190 CAQLEDLNLGREIH-----WYIS--ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242
           CA    L  G+E H     W ++  E+     + + NAL+DMY KC   ++A  +FD + 
Sbjct: 396 CASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 455

Query: 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302
            K                             ++ VV W  +IGG  Q   + EAL LF +
Sbjct: 456 PK-----------------------------DRSVVTWTVLIGGNAQHGEANEALELFSQ 486

Query: 303 MQATG--IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV-LGTALVDMYAK 359
           M      + P+A T    L AC++LGAL  G  IH ++ +  F   ++ +   L+DMY+K
Sbjct: 487 MLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 546

Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
            G++  A  VF  M +RN +++T+++ G  +HG+  +A+  F EM  V L+PD +TF+ +
Sbjct: 547 SGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVV 606

Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           L AC H G+VD+G  YF  M+  F + P  +HY+CMVDLL R+G L+EA +LIR MPM  
Sbjct: 607 LYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKP 666

Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
              VW AL  ACR++ NV +GE AA +LLEL+  + G Y LL+N+Y ++  W++  ++R 
Sbjct: 667 TPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRY 726

Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
           +M+  G++K PGCS ++       F   D SHP  +QIYD L  L +
Sbjct: 727 LMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQ 773



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 257/486 (52%), Gaps = 24/486 (4%)

Query: 44  FSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           F WN  IR  +  G + + + LY++M R G  RPD++T+P + K C  +     G  +  
Sbjct: 111 FWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD---ESCVRNLVSWNSLINGFVRSGF 160
            V   GF+ +++V N ++ ++  CG    A  VFD   E  V +LVSWNS++  +++ G 
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 161 PREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLAN 219
              A+++F  M  +  + PD V+++ ++ ACA +   + G+++H Y   SGL   V + N
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 289

Query: 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--- 276
           A++DMY KCG +E A ++F+ M  K VVS   M+ GY++ G  D A  +F+ + E+    
Sbjct: 290 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 349

Query: 277 -VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
            VV W+A+I GY Q     EAL +F +M   G +P+ VT V  LS C+  G L  G   H
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 336 RFIEKENFNL-------NVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIG 386
               K   NL       ++++  AL+DMY+KC +   A  +F  +P  +R+ +T+T +IG
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469

Query: 387 GLALHGKALDAISYFSEMIGVG--LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           G A HG+A +A+  FS+M+     +MP+  T    L AC   G +  GR+  A +     
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
            S  L   +C++D+  +SG ++ A  +  +M    + V W +L     +HG    GE A 
Sbjct: 530 ESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMHGR---GEEAL 585

Query: 505 MKLLEL 510
               E+
Sbjct: 586 QIFYEM 591



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 168/351 (47%), Gaps = 51/351 (14%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  +W+  I G+ + G   EA+D+++QML   G+ P+  T   L   CAS G    G E 
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLL-CGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 102 FGHVLKLGFDV-------DMYVHNAVIHVFVSCGDLGLACNVFD--ESCVRNLVSWNSLI 152
             H +K   ++       D+ V NA+I ++  C     A  +FD      R++V+W  LI
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 153 NGFVRSGFPREAIRLFRDM-QLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
            G  + G   EA+ LF  M Q +  V P+  T+   + ACA+L  L  GR+IH Y+  + 
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 528

Query: 211 L-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIF 269
             +  + +AN L+DMY K G +++A  +FD+M  +  VS T+++ GY   G         
Sbjct: 529 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG--------- 579

Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
                                 R +EAL +F+EMQ   + PD VT V  L ACS  G +D
Sbjct: 580 ----------------------RGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVD 617

Query: 330 DGIWIHRFIEKENFNLNVVLG----TALVDMYAKCGNIAKALQVFHEMPER 376
            GI    +    N +  VV G      +VD+ ++ G + +A+++   MP +
Sbjct: 618 QGI---NYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMK 665


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 175/449 (38%), Positives = 267/449 (59%), Gaps = 12/449 (2%)

Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG 210
           +I G  +S  P + + L+  M     EP+E T   ++  CA+   L  G ++H  +  +G
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 211 LTLTVPLANALMDMYVKCGK---LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267
               V +  +L+++Y   G    +  A  +FD +V++ +VS  +++ GY + G +D AR+
Sbjct: 61  YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120

Query: 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327
           IFD++PE+ VV W  +I G  Q  R K+AL LFHEM+  G+K D V  V  LSAC++LG 
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180

Query: 328 LDDGIWIHRFIEKE----NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTA 383
           L  G WIH +I++     N  L V L  +L+ MYA CG I KA +VF  M +R+++++T+
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 240

Query: 384 IIGGLALHGKALDAISYFSEMIGVGL---MPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
           +I G A  G A +A+  F  M  +G     PD ITF+G+L AC H G VD+GR +F  M+
Sbjct: 241 MITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMN 300

Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
             + + P+++HY CMVDLL R+G L+EA +LI SMPM  +  VWGAL   CR+H N  + 
Sbjct: 301 KKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELA 360

Query: 501 ERAAMKL-LELDP-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
              A KL LEL P Q +G  VLL+N+Y  +  W++   VR+ M E GV K  G S +++N
Sbjct: 361 SHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 420

Query: 559 GLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
           G++++F+  D +H     +Y+ L ++TR 
Sbjct: 421 GVVHDFVAGDWTHKHASSVYEMLSKITRQ 449



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 195/419 (46%), Gaps = 83/419 (19%)

Query: 50  IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109
           IRG  ++    + V+LY +M+      P+ FTY  L   CA   L   G ++ G V+  G
Sbjct: 2   IRGHSQSETPHKLVELYNRMV-EAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 110 FDVDMYVHNAVIHVF----------------------------------VSCGDLGLACN 135
           +  +++V  ++++++                                  V CGD+  A  
Sbjct: 61  YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           +FDE   RN+VSW ++I G  + G  ++A+ LF +M+   V+ D+V ++  +SACA+L D
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180

Query: 196 LNLGREIHWYISE----SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTT 251
           L LG  IH YI E        L V L N+L+ MY  CG ++ A ++F  M  ++ +S T+
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 240

Query: 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI--- 308
           MI G+AK G                                ++EAL +F  MQ  G    
Sbjct: 241 MITGFAKQG-------------------------------HAEEALGVFQWMQRLGTDEG 269

Query: 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT----ALVDMYAKCGNIA 364
           +PD +T +  L ACS  G +D G     F E  N    +V        +VD+ ++ G + 
Sbjct: 270 RPDGITFIGVLCACSHAGFVDQG---RHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLD 326

Query: 365 KALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT-FLGILS 421
           +A ++   MP + N   + A++GG  +H  A +  S+ ++ + + L PD+   +L +LS
Sbjct: 327 EAHRLIESMPMKPNDAVWGALLGGCRIHKNA-ELASHVAQKLALELKPDQAAGYLVLLS 384



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 139/300 (46%), Gaps = 15/300 (5%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLF 86
           ++D   +I   +   N  SW   I G  + G+ ++A+ L+ +M R  G + D        
Sbjct: 114 DVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEM-RRAGVKLDQVALVAAL 172

Query: 87  KVCASLGLRFLGYEIFGHV---LKLGFD-VDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             CA LG   LG  I  ++   L  G   + + ++N++IH++ SCG +  A  VF     
Sbjct: 173 SACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQ 232

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQ---LERVEPDEVTMIGMVSACAQLEDLNLG 199
           R+ +SW S+I GF + G   EA+ +F+ MQ    +   PD +T IG++ AC+    ++ G
Sbjct: 233 RSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQG 292

Query: 200 REIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
           R     +++  G+   +     ++D+  + G L+ A  + +SM  K   +    ++G  +
Sbjct: 293 RHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCR 352

Query: 259 FG-----FLDIARKIFDDLPEKYVVPWNAIIGG-YVQAKRSKEALALFHEMQATGIKPDA 312
                     +A+K+  +L       +  ++   Y  AKR ++   +  +M   G++  A
Sbjct: 353 IHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPA 412


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 189/582 (32%), Positives = 309/582 (53%), Gaps = 37/582 (6%)

Query: 4   TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
           +G     +  + LI F   S++ N++    +   +    + +W   I G+ + G+   ++
Sbjct: 180 SGFDQDVYVGTSLIDF--YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSL 237

Query: 64  DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
           +L+ QM R     PD +    +   C+ L     G +I  +VL+ G ++D+ V N +I  
Sbjct: 238 ELFAQM-RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDF 296

Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
           +  C  +     +FD+  V+N++SW ++I+G++++ F  EA++LF +M     +PD    
Sbjct: 297 YTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 356

Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243
             ++++C   E L  GR++H Y  ++ L     + N L+DMY                  
Sbjct: 357 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMY------------------ 398

Query: 244 KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303
                        AK   L  A+K+FD + E+ V+ +NA+I GY   ++  EAL LFHEM
Sbjct: 399 -------------AKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEM 445

Query: 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363
           +    KP+  T    ++A S L +L  G   H  + K   +    +  ALVDMYAKCG+I
Sbjct: 446 RVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 505

Query: 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423
            +A ++F+    R+ + + ++I   A HG+A +A+  F EM+  G+ P+ +TF+ +LSAC
Sbjct: 506 EEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSAC 565

Query: 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483
            H G V++G  +F  M   F + P  +HY+C+V LLGRSG L EA++ I  MP+    +V
Sbjct: 566 SHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIV 624

Query: 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543
           W +L  ACR+ GNV +G+ AA   +  DP+DSG Y+LL+N++    MW +  KVR  M+ 
Sbjct: 625 WRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDS 684

Query: 544 RGVEKTPGCSSIEVNGLLYEFIVRDKSHPELE--QIYDCLVQ 583
             V K PG S IEVN  +  FI RD +H E +   + D L+Q
Sbjct: 685 SEVVKEPGRSWIEVNNKVNVFIARDTTHREADIGSVLDILIQ 726



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 241/496 (48%), Gaps = 37/496 (7%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           + ++GL S  F  + LI  C  S+S  +D    +   + + N  +W+  +  + + G   
Sbjct: 75  IIVSGLQSDTFLANILINVC--SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSE 132

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           EA+ ++  + R  G  P+ F    + + C  LG+   G ++ G V++ GFD D+YV  ++
Sbjct: 133 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 192

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I  +   G++  A  VFD+   +  V+W ++I G+ + G    ++ LF  M+   V PD 
Sbjct: 193 IDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDR 252

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
             +  ++SAC+ LE L  G++IH Y+   G  + V + N L+D Y KC ++++  ++FD 
Sbjct: 253 YVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQ 312

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           MV K ++S TTMI GY +  F                  W              EA+ LF
Sbjct: 313 MVVKNIISWTTMISGYMQNSF-----------------DW--------------EAMKLF 341

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
            EM   G KPD       L++C    AL+ G  +H +  K N   +  +   L+DMYAK 
Sbjct: 342 GEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKS 401

Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
             +  A +VF  M E+N ++Y A+I G +   K  +A+  F EM      P+E TF  ++
Sbjct: 402 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALI 461

Query: 421 SACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
           +A  +   +  G+++  Q+  +     P + +   +VD+  + G +EEA ++  S  +  
Sbjct: 462 TAASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNS-SIWR 518

Query: 480 DVVVWGALFFACRLHG 495
           DVV W ++      HG
Sbjct: 519 DVVCWNSMISTHAQHG 534



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 187/427 (43%), Gaps = 88/427 (20%)

Query: 202 IHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261
           IH  I  SGL     LAN L+++  K  ++++A  +FD M +K +++ ++M+  Y++ G+
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 262 LDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
            + A  +F DL  K                              +G  P+       + A
Sbjct: 131 SEEALMVFVDLQRK------------------------------SGEHPNEFVLASVIRA 160

Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
           C+QLG ++ G  +H F+ +  F+ +V +GT+L+D Y+K GNI +A  VF ++ E+ ++T+
Sbjct: 161 CTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTW 220

Query: 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441
           T II G    G++  ++  F++M    ++PD      +LSAC     ++ G++  A    
Sbjct: 221 TTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAY--- 277

Query: 442 IFRLSPKL--KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL----------FF 489
           + R   ++     + ++D   +   ++   +L   M +  +++ W  +          + 
Sbjct: 278 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQM-VVKNIISWTTMISGYMQNSFDWE 336

Query: 490 ACRLHGNV-----------------SIGERAAMKLLELDPQDSGIYVLLAN--------- 523
           A +L G +                 S G R A++      +    Y + AN         
Sbjct: 337 AMKLFGEMNRLGWKPDGFACTSVLTSCGSREALE----QGRQVHAYTIKANLESDEFVKN 392

Query: 524 ----MYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
               MY  SN+  +A KV  +M E+ V        I  N ++  +  ++K    LE  ++
Sbjct: 393 GLIDMYAKSNLLIDAKKVFDVMAEQNV--------ISYNAMIEGYSSQEKLSEALELFHE 444

Query: 580 CLVQLTR 586
             V+L +
Sbjct: 445 MRVRLQK 451


>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 183/449 (40%), Positives = 270/449 (60%), Gaps = 19/449 (4%)

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--LEDL 196
            S +  +VSW S I    R+G   EA   F  MQ+  V P+ +T + ++SAC    LE L
Sbjct: 48  HSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGL 107

Query: 197 NLGREIHWYISESGL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
             G  IH Y+ + GL T  V +  AL+DMY KCG+L+ A  +FD M  +  VS  TMI G
Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDG 167

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
             + G +  A  +FD + E+  + W ++IGG+V+    ++AL  F EMQ  G++PD VT 
Sbjct: 168 CMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTI 227

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
           +  L+AC+ LGAL  G+WI+RF+ K++F  N+ +  +L+DMY++CG I  A QVF +MP+
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
           R+ +++ ++I G AL+G A +A+ +F+ M   G                H GLVDEG ++
Sbjct: 288 RSLVSWNSMIVGFALNGHAEEALEFFNLMRKEG----------------HSGLVDEGLQF 331

Query: 436 FAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           F  M    ++SP+++HY C+VDL  R+G LE+A  +I +MPM  + VV G+L  ACR HG
Sbjct: 332 FDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHG 391

Query: 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSI 555
           +V + ER    L E+DP     YVLL+N+Y     W+ A KVRK M+  G+ K PG SSI
Sbjct: 392 DVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSI 451

Query: 556 EVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
           E++G ++EF+  DK+H E + IY  L  L
Sbjct: 452 EMDGSIHEFVAGDKTHVETQNIYAMLDHL 480



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 174/385 (45%), Gaps = 86/385 (22%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL---GLRFLGYEI 101
           SW  +I      G++ EA   + +M +  G RP++ T+  L   C      GLRF G  I
Sbjct: 56  SWTSSIALHCRNGQLPEAAAEFSRM-QIAGVRPNHITFLTLLSACTDFPLEGLRF-GGSI 113

Query: 102 FGHVLKLGFDVD-MYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN----------- 149
             +V KLG D + + V  A++ ++  CG L LA  +FDE  VRN VSWN           
Sbjct: 114 HAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE 173

Query: 150 --------------------SLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189
                               S+I GFV+ G   +A+  FR+MQL  VEPD VT+I +++A
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAA 233

Query: 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249
           CA L  L LG  I+ ++ +      + ++N+L+DMY +CG +  A ++F+ M  +++VS 
Sbjct: 234 CANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSW 293

Query: 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
            +MIVG+A  G                                ++EAL  F+ M+  G  
Sbjct: 294 NSMIVGFALNG-------------------------------HAEEALEFFNLMRKEG-- 320

Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQ 368
                           G +D+G+     +++    +  +     LVD+Y++ G +  AL 
Sbjct: 321 --------------HSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALN 366

Query: 369 VFHEMPER-NSLTYTAIIGGLALHG 392
           V   MP + N +   +++     HG
Sbjct: 367 VIANMPMKPNEVVLGSLLAACRTHG 391



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 19/213 (8%)

Query: 34  ILFN-VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           +LF+ +   ++ SW   I GF++ G   +A++ +++M +  G  PD  T   +   CA+L
Sbjct: 179 VLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREM-QLAGVEPDYVTIISVLAACANL 237

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G   LG  I   V+K  F  ++ + N++I ++  CG + LA  VF++   R+LVSWNS+I
Sbjct: 238 GALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMI 297

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED-LNLGREIHWYISESGL 211
            GF  +G   EA+  F  M+ E          G+V    Q  D +   R+I   I   G 
Sbjct: 298 VGFALNGHAEEALEFFNLMRKE-------GHSGLVDEGLQFFDIMKRTRKISPRIEHYG- 349

Query: 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
                    L+D+Y + G+LE A  +  +M  K
Sbjct: 350 --------CLVDLYSRAGRLEDALNVIANMPMK 374


>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
          Length = 601

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 304/560 (54%), Gaps = 18/560 (3%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFN--VQNPNSFSWNVAIRGFLETGKM--R 60
           GL    F  SRL+ +  +  S  L    ++LF      PN + +N+ +            
Sbjct: 47  GLAMETFPMSRLLHYAIVVSSPRLTREAELLFQHFTPRPNLYIYNLMLSAAAARDSSSST 106

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
           +A  LY+ ML +    PD  T+  L +    L     G ++  HV+  G    +Y+ N++
Sbjct: 107 QAAALYRSMLASS-VLPDQQTFLALLRSVERLSA---GRQVHAHVVVSGLHSRVYLRNSL 162

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I +++  GD+  A  +F  + V + VS N +++G+V  G   +A+  FRDM    +  D+
Sbjct: 163 IKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQ 222

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYI------SESGLTLTVPLANALMDMYVKCGKLESA 234
            T + +++ C +L++  +GR +H  I       + GL L     NAL+DMY KCG++ +A
Sbjct: 223 YTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILV----NALLDMYAKCGRMNAA 278

Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
           + IF     K  +S  TM+ G+   G LD+A + F + P + ++ WNA++ GY + K   
Sbjct: 279 KTIFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKSFN 338

Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
           E + LFH+M A+ +  D VT V  +SA +  G+L+    +H ++ KE  + +  L +ALV
Sbjct: 339 EVMKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEFDHQDAFLASALV 398

Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
           DMY KCGN+  A  VF +  +++   +TA+I GLA +G   +A+  F +M    + P+ +
Sbjct: 399 DMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCKMQTEVVAPNGV 458

Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
           T L +LSAC H GL+DEG K F  M   + + P ++H+ CMVDLL RSG L +A  L R 
Sbjct: 459 TLLAVLSACSHSGLLDEGCKIFDAMKQRYSIEPGIEHFGCMVDLLARSGRLIDALALARR 518

Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
           MPM     +WG++  A     N+ + E A+ +LL LDP + G YVLL+N++     W  +
Sbjct: 519 MPMRPSRSIWGSILNASLAGQNIEVAEIASKELLRLDPAEEGGYVLLSNLHAAGGHWNHS 578

Query: 535 GKVRKMMEERGVEKTPGCSS 554
            KVR++ME +G+ K  G S+
Sbjct: 579 DKVRQIMERKGLRKLAGASN 598


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 175/488 (35%), Positives = 272/488 (55%), Gaps = 33/488 (6%)

Query: 101 IFGHVLKLGFDVDMYVHNAVIH--VFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
           I  H+++     D ++ + +I        G +  A  +F  +   NL  WN++I G+  S
Sbjct: 26  IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSIS 85

Query: 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
             P  AI L+RDM L  + P+  T   ++ AC +L  L  G+E+H  I + GL    PL 
Sbjct: 86  DSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLV 145

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
           N L+ +Y  CG                                +D A  +FD++PE    
Sbjct: 146 NGLIKLYAACG-------------------------------CMDYACVMFDEMPEPDSA 174

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
            W+ ++ GY Q  ++ EAL LF EMQA  +  DA T    +  C  LGALD G W+H ++
Sbjct: 175 SWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYM 234

Query: 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAI 398
           +KE   ++VVLGTALV MY+KCG++  AL+VF  M ER+   ++ +I G A+HG    A+
Sbjct: 235 DKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKAL 294

Query: 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458
             F  M     +P+ +TF  +LSAC H GLV++G + F  M + ++++P++KHY CMVDL
Sbjct: 295 QLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDL 354

Query: 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518
             R+G++  A + I++MP+  +VV+W  L  AC+ HG   +GE  + K+L+LDP     Y
Sbjct: 355 FCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENY 414

Query: 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
           VL++N+Y     W    +VR +M+++  +K  G SSIE+N ++++FI+ D+SHPE E+IY
Sbjct: 415 VLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIY 474

Query: 579 DCLVQLTR 586
             L Q+ R
Sbjct: 475 GMLHQMAR 482



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 193/394 (48%), Gaps = 34/394 (8%)

Query: 1   MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
           M    L    F  S+LI   A++ S ++ Y  +I     +PN F WN  IRG+  +    
Sbjct: 30  MVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPI 89

Query: 61  EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
            A+ LY+ M    G  P+++T+  + K C  L     G E+   ++K+G D +  + N +
Sbjct: 90  TAIALYRDMFL-CGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGL 148

Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
           I ++ +CG +  AC +FDE    +  SW+++++G+ ++G   EA++LFR+MQ E V  D 
Sbjct: 149 IKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDA 208

Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
            T+  +V  C  L  L+LG+ +H Y+ + G+ + V L  AL+ MY KCG L++A ++F  
Sbjct: 209 FTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQG 268

Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
           M  + V + +TMI GYA  G  + A ++FD +                  KRSK      
Sbjct: 269 MAERDVTAWSTMIAGYAIHGHGEKALQLFDAM------------------KRSKTI---- 306

Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAK 359
                    P+ VT    LSACS  G ++ G  I   +  E      +     +VD++ +
Sbjct: 307 ---------PNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCR 357

Query: 360 CGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHG 392
            G +  A +    MP E N + +  ++G    HG
Sbjct: 358 AGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 10/263 (3%)

Query: 28  LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
           +DY   +   +  P+S SW+  + G+ + G+  EA+ L+++M +      D FT   +  
Sbjct: 158 MDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREM-QAENVSSDAFTLASVVG 216

Query: 88  VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
           VC  LG   LG  +  ++ K G  +D+ +  A++ ++  CG L  A  VF     R++ +
Sbjct: 217 VCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTA 276

Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI- 206
           W+++I G+   G   +A++LF  M+  +  P+ VT   ++SAC+    +  G +I   + 
Sbjct: 277 WSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMW 336

Query: 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLD-- 263
           +E  +T  +     ++D++ + G +  A +   +M +   VV   T++      G+ D  
Sbjct: 337 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLG 396

Query: 264 --IARKIFD---DLPEKYVVPWN 281
             I+RKI       PE YV+  N
Sbjct: 397 EHISRKILKLDPSSPENYVLVSN 419


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 309/573 (53%), Gaps = 34/573 (5%)

Query: 5   GLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVD 64
           G  S+ F  + LI   A S S  +    ++   + + +  SW   I  + E     EA++
Sbjct: 76  GYGSNTFIGTALID--AYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALE 133

Query: 65  LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
            + QM R  G +P+NFT+  + K C  L     G  +   VLK  ++ D+YV   ++ ++
Sbjct: 134 FFSQM-RVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELY 192

Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
             CGD   A   F +    +++ W+ +I+ F +SG   +A+ +F  M+   V P++ T  
Sbjct: 193 TRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFS 252

Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
            ++ A A +E L+L + IH +  ++GL+  V ++NALM  Y KCG +E + E+       
Sbjct: 253 SVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMEL------- 305

Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
                                   F+ L ++  V WN II  YVQ    + AL+LF  M 
Sbjct: 306 ------------------------FEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNML 341

Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
              ++   VT    L AC+ L AL+ G+ +H    K  +  +V +G AL+DMYAKCG+I 
Sbjct: 342 RYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIK 401

Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
            A  +F  +  R+ +++ AII G ++HG  ++AI  F+ M      PDE+TF+G+LSAC 
Sbjct: 402 DARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACS 461

Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
           + G +DEG++YF  M   + + P ++HY+CMV L+GRSG L++A + I  +P    V++W
Sbjct: 462 NTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIW 521

Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
            AL  AC +H +V +G  +A ++LEL+P+D   +VLL+N+Y  +  W     VRK M+ +
Sbjct: 522 RALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRK 581

Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           GV+K PG S IE  G ++ F V D SH +L+ I
Sbjct: 582 GVKKEPGLSWIENQGNVHCFTVADTSHADLKLI 614



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 206/454 (45%), Gaps = 34/454 (7%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ S+   I G+ ++ K  EA +L+ + L   G   + F +  + K+  S+    LG  +
Sbjct: 10  NTVSFVTLIHGYAQSNKFIEAFELFAR-LHGEGHELNPFVFTTVLKLLVSMEWAELGRIV 68

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
            G VLK+G+  + ++  A+I  +   G + +A  VFDE   +++VSW  +I  +  +   
Sbjct: 69  HGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCF 128

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            EA+  F  M++   +P+  T  G++ AC  L++ + G+ +H  + ++     + +   L
Sbjct: 129 SEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGL 188

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           +++Y +CG  + A   F  M    V+  + MI  +A+ G  + A +IF  +   +V+   
Sbjct: 189 LELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVI--- 245

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                                       P+  T    L A + + +LD    IH    K 
Sbjct: 246 ----------------------------PNQFTFSSVLQASADIESLDLSKTIHGHALKA 277

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
             + +V +  AL+  YAKCG I +++++F  + +RN +++  II      G    A+S F
Sbjct: 278 GLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLF 337

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
           S M+   +   E+T+  IL AC     ++ G +     +        +   + ++D+  +
Sbjct: 338 SNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTI-YGQDVAVGNALIDMYAK 396

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
            G +++A  +   + +  D V W A+     +HG
Sbjct: 397 CGSIKDARFMFDMLDL-RDKVSWNAIICGYSMHG 429



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 31/287 (10%)

Query: 136 VFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED 195
           VFDE   RN VS+ +LI+G+ +S    EA  LF  +  E  E +      ++     +E 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 196 LNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVG 255
             LGR +H  + + G      +  AL+D Y   G +  A E+FD + +K +VS       
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVS------- 114

Query: 256 YAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315
                                   W  +I  Y +     EAL  F +M+  G KP+  T 
Sbjct: 115 ------------------------WTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTF 150

Query: 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE 375
              L AC  L   D G  +H  + K N+  ++ +G  L+++Y +CG+   A + F +MP+
Sbjct: 151 AGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPK 210

Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422
            + + ++ +I   A  G++  A+  F +M    ++P++ TF  +L A
Sbjct: 211 NDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQA 257


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 297/548 (54%), Gaps = 6/548 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +WN  I G+   G+  +A+ L+  +       PD+ T   +   CA L    +G +I  +
Sbjct: 320 TWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAY 379

Query: 105 VLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           + +  F   D  V NA++  +  CG    A + F    +++L+SWNS+ + F        
Sbjct: 380 IFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFGEKRHHSR 439

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESG--LTLTVP-LANA 220
            + L   M   R+ PD VT++ ++  CA L  +   +EIH Y   +G  L+ T P + NA
Sbjct: 440 FLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNA 499

Query: 221 LMDMYVKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279
           ++D Y KCG +E A ++F ++  K  +V+C ++I GY   G    A  IF  + E  +  
Sbjct: 500 ILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLTT 559

Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339
           WN ++  Y +    ++AL L HE+QA G+KPD VT +  L  C+Q+ ++        +I 
Sbjct: 560 WNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQGYII 619

Query: 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS 399
           +  F  ++ L  AL+D YAKCG I +A ++F    E++ + +TA+IGG A+HG + +A+ 
Sbjct: 620 RSCFK-DLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALW 678

Query: 400 YFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459
            FS M+ +G+ PD I F  ILSAC H G VDEG K F  +  +  + P ++ Y+C+VDLL
Sbjct: 679 IFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLL 738

Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519
            R G + EA  L+ S+P+ A+  +WG L  AC+ H  V +G   A +L +++  D G Y+
Sbjct: 739 ARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVANQLFKIEANDIGNYI 798

Query: 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYD 579
           +L+N+Y     W+   +VR+MM  + ++K  GCS IEV      F+  D SHP+   IY 
Sbjct: 799 VLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSWIEVERTNNIFVAGDCSHPQRSIIYS 858

Query: 580 CLVQLTRH 587
            L  L R 
Sbjct: 859 TLQTLDRQ 866



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 239/531 (45%), Gaps = 52/531 (9%)

Query: 31  CTKILFNVQNPNSFSWNVAIRGFLETGKM-REAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89
           C K+   + + +   WN+ + GF  + K   + + +++ M  +    P++ T   +  VC
Sbjct: 97  CLKLFDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHSSREALPNSVTVATVLPVC 156

Query: 90  ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL-ACNVFDESCVRNLVSW 148
           A LG    G  + G+V+K GFD D    NA++ ++  CG +   A  VFD    +++VSW
Sbjct: 157 ARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSW 216

Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED---LNLGREIHWY 205
           N++I G   +    +A  LF  M      P+  T+  ++  CA  +       GR+IH Y
Sbjct: 217 NAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIHSY 276

Query: 206 ISE-SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           + +   L+  V + NAL+ +Y+K G++  AE +F +M  + +V+                
Sbjct: 277 VLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVT---------------- 320

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA-TGIKPDAVTTVHCLSACS 323
                          WNA I GY       +AL LF  + +   + PD+VT V  L AC+
Sbjct: 321 ---------------WNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACA 365

Query: 324 QLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYT 382
           QL  L  G  IH +I +  F   +  +G ALV  YAKCG   +A   F  +  ++ +++ 
Sbjct: 366 QLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWN 425

Query: 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC---HGGLVDEGRKYFAQM 439
           +I             +S    M+ + + PD +T L I+  C        V E   Y  + 
Sbjct: 426 SIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRT 485

Query: 440 SSIF-RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
            S+    +P +   + ++D   + G +E A ++ +++    ++V   +L     + G V 
Sbjct: 486 GSLLSNTAPTVG--NAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSL-----ISGYVG 538

Query: 499 IGER--AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
           +G    A M    +   D   + L+  +Y +++  E+A  +   ++ RG++
Sbjct: 539 LGSHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMK 589



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 208/459 (45%), Gaps = 49/459 (10%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLR-NGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103
           +W   I       K  EA+ L+   L+ +   +PD+     + K C++L    LG  + G
Sbjct: 8   TWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGRTLHG 67

Query: 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-FPR 162
           +V+K G       +  +++++  CG L     +FD+    + V WN +++GF  S     
Sbjct: 68  YVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDA 127

Query: 163 EAIRLFRDMQLER-VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
           + +R+FR M   R   P+ VT+  ++  CA+L DL+ G+ +H Y+ +SG        NAL
Sbjct: 128 DVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNAL 187

Query: 222 MDMYVKCGKL-ESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
           + MY KCG +   A  +FD++  K VVS                               W
Sbjct: 188 VSMYAKCGLVSHDAYAVFDNIAYKDVVS-------------------------------W 216

Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG---ALDDGIWIHRF 337
           NA+I G  + +  ++A  LF  M     +P+  T  + L  C+      A   G  IH +
Sbjct: 217 NAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIHSY 276

Query: 338 I-EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
           + +    + +V +  AL+ +Y K G + +A  +F  M  R+ +T+ A I G   +G+ L 
Sbjct: 277 VLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWLK 336

Query: 397 AISYFSEMIGV-GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS-- 453
           A+  F  +  +  L+PD +T + IL AC     +  G++  A    IFR  P L + +  
Sbjct: 337 ALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAY---IFR-HPFLFYDTAV 392

Query: 454 --CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490
              +V    + G  EEA     SM    D++ W ++F A
Sbjct: 393 GNALVSFYAKCGYTEEAYHTF-SMISMKDLISWNSIFDA 430


>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 533

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 269/458 (58%), Gaps = 5/458 (1%)

Query: 133 ACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
           AC +F    +RN+  +NS+I G+V S  P  AI  + DM    +  +  T   ++ AC  
Sbjct: 65  ACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTT 124

Query: 193 LEDLN--LGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
           L   +  +G  +H ++   G      + +AL++ Y     + +A  +FD + N+ VV  T
Sbjct: 125 LGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWT 184

Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
            MI GY K G ++ AR +F+D+PE+  + W+A++  Y +    KE L LF  MQ  G  P
Sbjct: 185 AMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMP 244

Query: 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370
           +    V  L+AC+ LGAL  G+W+H + ++ NF+ N +L TALVDMY+KCG +  AL  F
Sbjct: 245 NESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTF 304

Query: 371 HEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430
             +P +++  + A+I G+A++G A  ++  F++MI  G  P E TF+ +L+AC H  LV 
Sbjct: 305 QGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVK 364

Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA---ADVVVWGAL 487
           EG K F QMSS + + P+L+HY+C+VDL+ R+G+L EAE+ I          D  VWGA+
Sbjct: 365 EGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAM 424

Query: 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
             ACR +GN+ +G R   KL ++   D G +VL  N+YR++    EA +VR+++ E G++
Sbjct: 425 LGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMK 484

Query: 548 KTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
           K PGCS IEV+G + EF+  D SH +  QI   L  L+
Sbjct: 485 KKPGCSIIEVDGTVEEFLAGDLSHSQAPQICKTLDSLS 522



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 175/400 (43%), Gaps = 73/400 (18%)

Query: 11  FAPSRLIAFCAISESKNL-DYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM 69
           FA  +L++  A S + +   +   I  N+   N F +N  IRG++ +     A+  Y  M
Sbjct: 44  FAIGQLLSLAATSNNPSFFSHACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDM 103

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGL--RFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127
           L N G   +N+T+P L K C +LG   + +G  +  HV+  GFD D +V +A+I  +   
Sbjct: 104 L-NYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLN 162

Query: 128 GDLGLACNVFDESCVRNLVSWNSLINGF-------------------------------V 156
            D+G A  +FD    R++V W ++I+G+                                
Sbjct: 163 FDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYS 222

Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
           R G  +E + LFR MQ     P+E  ++ +++ACA L  L  G  +H Y  +        
Sbjct: 223 RVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPI 282

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           LA AL+DMY KCG +ESA   F  +                               P K 
Sbjct: 283 LATALVDMYSKCGCVESALSTFQGI-------------------------------PNKD 311

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
              WNA+I G      + ++L LF++M + G +P   T V  L+AC+    + +G+   +
Sbjct: 312 AGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGL---K 368

Query: 337 FIEKENFNLNVVLG----TALVDMYAKCGNIAKALQVFHE 372
             E+ + N  V         LVD+ A+ G +A+A +   E
Sbjct: 369 LFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFIEE 408


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 296/548 (54%), Gaps = 8/548 (1%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           SWN  I G+   G+  +A++L+ ++L      PD+ T   +   CA      +G  I G+
Sbjct: 304 SWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGY 363

Query: 105 VLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163
           VL+      D  V NA++  +  C D+  A   F     R+L+SWNS+++  V SG+   
Sbjct: 364 VLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTW 423

Query: 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY-----ISESGLTLTVPLA 218
            + L R M  E   PD VT++ +V  C  +   +  +E H Y     +  S   +   + 
Sbjct: 424 FLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIG 483

Query: 219 NALMDMYVKCGKLESAEEIFDSMV-NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV 277
           NA++D Y KCG +E A ++F S+  N+ +V+   +I GY   G LD A   F+ +P   +
Sbjct: 484 NAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDL 543

Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337
             WN ++  Y +   S +AL LFHE+QA GIKPDAVT +  L AC+++ ++      H +
Sbjct: 544 SVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGY 603

Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397
             +  F  ++ L  AL D+YAKCG+I  A ++F  +P ++ + +TA+I G A+HG   +A
Sbjct: 604 AIRSCFG-DLHLDGALQDVYAKCGSIGYAFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEA 662

Query: 398 ISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457
           +  F  MI +G+ PD +    +LSAC H GLVDEG   F  +  +  +   ++ YSC+VD
Sbjct: 663 LGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVD 722

Query: 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517
           LL R G +++A  ++  MP+ A+  +WG L  ACR H  V +G   A +L +++ ++ G 
Sbjct: 723 LLARGGRIDDAFSMVTGMPIEANANIWGTLLGACRTHHEVELGRFVADRLFKIEAENIGN 782

Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
           YV+L+N+Y     W+   ++RK+M  R ++K  GCS IEV      F+  D SHP    I
Sbjct: 783 YVVLSNLYAADARWDGVMEIRKLMRTRDLKKPAGCSWIEVERRKNVFVAGDTSHPHRIDI 842

Query: 578 YDCLVQLT 585
           Y  L  L 
Sbjct: 843 YRILSTLN 850



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 241/519 (46%), Gaps = 56/519 (10%)

Query: 46  WNVAIRGFLETGKM-REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           WN+ + G+  +     E + L+++M      +P + T  ++  VCA LG  ++G  +  +
Sbjct: 96  WNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCY 155

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACN----VFDESCVRNLVSWNSLINGFVRSGF 160
            +K G D      NA++ ++  CG   L C      FD    +++VSWN++I+GF  +  
Sbjct: 156 AIKSGLDTHTLAGNALVSMYAKCG---LVCQDAYAAFDSIDEKDVVSWNAIISGFAENNL 212

Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED---LNLGREIHWYI-SESGLTLTVP 216
             +A RLF  M   +++P+  T+  ++  CA  ++      G+EIH Y+   + L   V 
Sbjct: 213 MEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVF 272

Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
           + NAL+  Y++ G++E AE +F  M  + +VS   +I GYA  G                
Sbjct: 273 VWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNG---------------- 316

Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIH 335
              W+             +AL LFHE+     I+PD+VT +  + AC+Q   L  G  IH
Sbjct: 317 --EWS-------------KALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIH 361

Query: 336 RFIEKENFNL-NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKA 394
            ++ +      +  +G ALV  YAKC +I  A + F  +  R+ +++ +++  L   G  
Sbjct: 362 GYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYN 421

Query: 395 LDAISYFSEMIGVGLMPDEITFLGILSACCH---GGLVDEGRKYFAQ---MSSIFRLSPK 448
              +     M+  G  PD +T L ++  C +      V E   Y  +   ++S F + P 
Sbjct: 422 TWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPT 481

Query: 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508
           +   + ++D   + G +E A ++ +S+    ++V + A+      + N  + + A +   
Sbjct: 482 IG--NAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISG---YINCGLLDEAYITFN 536

Query: 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547
            +   D  ++ L+  +Y +++   +A  +   ++  G++
Sbjct: 537 RMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIK 575



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/513 (26%), Positives = 227/513 (44%), Gaps = 100/513 (19%)

Query: 37  NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG--- 93
           ++   +  SWN  I GF E   M +A  L+  ML+ G  +P+  T   +  VCAS     
Sbjct: 191 SIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLK-GQIKPNYTTLANILPVCASFDEYI 249

Query: 94  LRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
             + G EI G+VL+      D++V NA++  ++  G +  A  +F    +R+LVSWN++I
Sbjct: 250 AYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAII 309

Query: 153 NGFVRSGFPREAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211
            G+  +G   +A+ LF + + L+ +EPD VT++ ++ ACAQ  +L++G+ IH Y+    L
Sbjct: 310 AGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPL 369

Query: 212 TL-TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270
                 + NAL+  Y KC  +E A E F  +  + ++S                      
Sbjct: 370 LCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLIS---------------------- 407

Query: 271 DLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330
                    WN+++   V++  +   L L   M + G  PD+VT +  +  C  +   D 
Sbjct: 408 ---------WNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDK 458

Query: 331 GIWIHRF-----IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAI 384
               H +     +    F++   +G A++D YAKCGNI  A +VF  + E RN +T+ AI
Sbjct: 459 VKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAI 518

Query: 385 IGG-------------------------------LALHGKALDAISYFSEMIGVGLMPDE 413
           I G                                A +  +  A+  F E+   G+ PD 
Sbjct: 519 ISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDA 578

Query: 414 ITFLGILSAC-----------CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462
           +T + +L AC           CHG  +   R  F  +     L   L+      D+  + 
Sbjct: 579 VTIMSLLPACAEMASVQLIKQCHGYAI---RSCFGDL----HLDGALQ------DVYAKC 625

Query: 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
           G +  A +L + +P   D++++ A+     +HG
Sbjct: 626 GSIGYAFKLFQLIP-NKDLIIFTAMIRGYAMHG 657



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 182/415 (43%), Gaps = 74/415 (17%)

Query: 16  LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGT 75
           L++F A  +  +++   +  F +   +  SWN  +   +E+G     ++L + ML   GT
Sbjct: 380 LVSFYA--KCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSE-GT 436

Query: 76  RPDNFTYPLLFKVCASL-----GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
            PD+ T   +   C ++           Y I   +L   FDV+  + NA++  +  CG++
Sbjct: 437 TPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNI 496

Query: 131 GLACNVFDE-SCVRNLVSWNSLINGFVRSG--------FPR------------------- 162
             A  VF   S  RNLV++ ++I+G++  G        F R                   
Sbjct: 497 EYASKVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAEN 556

Query: 163 ----EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLA 218
               +A+ LF ++Q   ++PD VT++ ++ ACA++  + L ++ H Y   S     + L 
Sbjct: 557 DCSSQALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCFG-DLHLD 615

Query: 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278
            AL D+Y KCG +  A ++F  + NK ++  T MI GYA  G                  
Sbjct: 616 GALQDVYAKCGSIGYAFKLFQLIPNKDLIIFTAMIRGYAMHGM----------------- 658

Query: 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFI 338
                          KEAL  F  M   GIKPD V     LSACS  G +D+G+ I   I
Sbjct: 659 --------------GKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSI 704

Query: 339 EK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALH 391
           EK     L +   + +VD+ A+ G I  A  +   MP E N+  +  ++G    H
Sbjct: 705 EKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIWGTLLGACRTH 759



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 176/420 (41%), Gaps = 52/420 (12%)

Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
           D   +  ++ +CA L  +  GR +H  I   G      ++ AL++MY KCG L+ ++++F
Sbjct: 23  DYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLF 82

Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK-RSKEAL 297
                  + SC                        ++  + WN ++ GY  ++    E L
Sbjct: 83  GE-----IGSCN-----------------------DRDPIFWNILLSGYAGSRVYDAETL 114

Query: 298 ALFHEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356
            LF EM  A   KP +VT    L  C++LG +  G  ++ +  K   + + + G ALV M
Sbjct: 115 RLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSM 174

Query: 357 YAKCGNIAK-ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415
           YAKCG + + A   F  + E++ +++ AII G A +    DA   FS M+   + P+  T
Sbjct: 175 YAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTT 234

Query: 416 FLGILSACCHGGLVDE------GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469
              IL  C      DE      G++    +     L   +  ++ +V    R G +EEAE
Sbjct: 235 LANILPVCAS---FDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAE 291

Query: 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD---PQDSGIYVLLANMYR 526
            L R M +  D+V W A+      +G  S       +LL LD   P    +  ++    +
Sbjct: 292 LLFRRMEL-RDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQ 350

Query: 527 DSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
             N+      V KM+    +     C    V   L  F  +     ++E  Y+    ++R
Sbjct: 351 SRNL-----HVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCD---DIEGAYETFFMISR 402


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 185/540 (34%), Positives = 282/540 (52%), Gaps = 32/540 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N+ +W   I G +  G+ +E +  Y   + +     D FT+ +  K CA L     G +I
Sbjct: 167 NAVTWTAIITGLVHAGRYKEGLT-YFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQI 225

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
             HV+  GFD  ++V N++  ++  CG++     +F+    R++VSW SLI  + R G  
Sbjct: 226 HTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHE 285

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
            +A+  F  M+  +V P+E T   M SACA L  L  G ++H  +   GL  ++ ++N++
Sbjct: 286 EKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSM 345

Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
           M MY  CGKL+SA  +F  M  + ++S +T+I GY++ GF                    
Sbjct: 346 MKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGF-------------------- 385

Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
                       +EA   F  M+ +G KP        LS    +  L+ G  +H      
Sbjct: 386 -----------GEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCF 434

Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
               N  + + L++MY+KCGNI +A ++F E    + ++ TA+I G A HGK+ +AI  F
Sbjct: 435 GLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLF 494

Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461
            + + VG  PD +TF+ +L+AC H G +D G  YF  M   + + P  +HY CMVDLL R
Sbjct: 495 EKSLKVGFSPDSVTFISVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCR 554

Query: 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521
           +G L EAE++I  M    D VVW  L  AC+  G++  G RAA ++LELDP  +   V L
Sbjct: 555 AGRLSEAEKMIDEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTL 614

Query: 522 ANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
           AN+Y  +   EEA  VRK M+ +GV K PG SSI++   +  F+  D+ HP  E IY+ L
Sbjct: 615 ANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPLSEDIYNIL 674



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 215/484 (44%), Gaps = 38/484 (7%)

Query: 27  NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQM-LRNGGTRPDNFTYPLL 85
           NL    ++   + + +  SW   I+G++      EA+ L+  M + +    PD     ++
Sbjct: 49  NLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVV 108

Query: 86  FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL 145
            K C        G  +  + +K      ++V ++++ ++   G +  +C VF E   RN 
Sbjct: 109 LKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNA 168

Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205
           V+W ++I G V +G  +E +  F +M       D  T    + ACA L  +  G++IH +
Sbjct: 169 VTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTH 228

Query: 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265
           +   G   TV +AN+L  MY +CG++     +F++M  + VVS T++IV Y + G     
Sbjct: 229 VIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIG----- 283

Query: 266 RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL 325
                                       ++A+  F +M+ + + P+  T     SAC+ L
Sbjct: 284 --------------------------HEEKAVETFIKMRNSQVPPNEQTFATMFSACASL 317

Query: 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII 385
             L  G  +H  +     N ++ +  +++ MY+ CG +  A  +F  M  R+ ++++ II
Sbjct: 318 SRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTII 377

Query: 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445
           GG +  G   +A  YFS M   G  P +     +LS   +  +++ GR+  A ++  F L
Sbjct: 378 GGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHA-LAFCFGL 436

Query: 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505
                  S ++++  + G ++EA ++        D+V   A+      HG      + A+
Sbjct: 437 EQNSTVRSTLINMYSKCGNIKEASKIFEETDR-DDIVSLTAMINGYAEHGK----SKEAI 491

Query: 506 KLLE 509
            L E
Sbjct: 492 DLFE 495



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 187/420 (44%), Gaps = 50/420 (11%)

Query: 70  LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129
           +RNGGT         + + C +  +  L   +   +  + FD      N+ +   ++ G+
Sbjct: 5   VRNGGT---------IQRFCTA-SISLLEKPVEKTIQVVTFDT-----NSHLRSLINAGN 49

Query: 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL--ERVEPDEVTMIGMV 187
           L +A  VFD+   R++VSW ++I G+V +    EA+ LF  M++    V PD   +  ++
Sbjct: 50  LRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVL 109

Query: 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV 247
            AC Q  ++  G  +H Y  ++ L  +V + ++L+DMY + GK+E +  +F  M      
Sbjct: 110 KACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEM------ 163

Query: 248 SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
                                    P +  V W AII G V A R KE L  F EM ++ 
Sbjct: 164 -------------------------PFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSE 198

Query: 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367
              D  T    L AC+ L  +  G  IH  +    F+  V +  +L  MY +CG +   L
Sbjct: 199 ELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGL 258

Query: 368 QVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427
            +F  M ER+ +++T++I      G    A+  F +M    + P+E TF  + SAC    
Sbjct: 259 CLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLS 318

Query: 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
            +  G +    + S+  L+  L   + M+ +    G L+ A  L + M    D++ W  +
Sbjct: 319 RLVWGEQLHCNVFSL-GLNDSLSVSNSMMKMYSTCGKLDSASVLFQGM-RCRDIISWSTI 376


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 290/503 (57%), Gaps = 32/503 (6%)

Query: 79  NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFD 138
           +F + +L K+CA   L   G      +L +G   D+   N +I+++  CG +  A  VFD
Sbjct: 65  SFVHEIL-KLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD 123

Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
           E   R+LVSWN++I    ++G   EA+ L   MQ E     E T+  ++ ACA    L+ 
Sbjct: 124 EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE 183

Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
            + +H +  ++ + L V +A AL+D+Y KCG ++                          
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKD------------------------- 218

Query: 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318
                 A  +F+ +P++ VV W+++  GYVQ +  ++ALALF +   TG+K D       
Sbjct: 219 ------AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSV 272

Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS 378
           + AC+ L A+ +G  ++  + K  F  N+ + ++L+DMYAKCG I ++ +VF ++ +RN 
Sbjct: 273 ICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNV 332

Query: 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438
           + + A+I GL+ H ++L+ +  F +M  +GL P+++TF+ +LSAC H GLV +G+KYF  
Sbjct: 333 VLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDL 392

Query: 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498
           M+    L+P + HYSCMVD L R+G + EA  LI  +P  A   +WG+L  +CR HGN+ 
Sbjct: 393 MTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLE 452

Query: 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVN 558
           + E AA KL +++P +SG Y+LL+NMY  +  W+E  K+RK+++E  V+K  G S IE+ 
Sbjct: 453 LAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIK 512

Query: 559 GLLYEFIVRDKSHPELEQIYDCL 581
             ++ F+V +++HP++ +IY  L
Sbjct: 513 DKVHLFMVGERNHPKIVEIYSKL 535



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 181/372 (48%), Gaps = 34/372 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S+  ++D+  ++   + + +  SWN  I    + G+  EA+DL  QM R  GT    FT 
Sbjct: 110 SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQRE-GTPFSEFTI 168

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +   CA+         +    +K   D++++V  A++ V+  CG +  A  VF+    
Sbjct: 169 SSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPD 228

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++V+W+S+  G+V++    +A+ LFR      ++ D+  M  ++ ACA L  +  G+++
Sbjct: 229 RSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQV 288

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
           +  +S+SG    + +A++L+DMY KCG +E + ++F                        
Sbjct: 289 NALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVF------------------------ 324

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                   D+ ++ VV WNA+I G  +  RS E + LF +MQ  G+ P+ VT V  LSAC
Sbjct: 325 -------RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSAC 377

Query: 323 SQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT- 380
             +G +  G      + KE +   NV   + +VD  ++ G I +A  +  ++P   S + 
Sbjct: 378 GHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASM 437

Query: 381 YTAIIGGLALHG 392
           + +++     HG
Sbjct: 438 WGSLLASCRTHG 449



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 112/235 (47%), Gaps = 7/235 (2%)

Query: 45  SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
           +W+    G+++     +A+ L+++    G  + D F    +   CA L     G ++   
Sbjct: 233 TWSSMAAGYVQNEMYEQALALFRKAWETG-LKHDQFLMSSVICACAGLAAMIEGKQVNAL 291

Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
           + K GF  +++V +++I ++  CG +  +  VF +   RN+V WN++I+G  R     E 
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351

Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANALMD 223
           + LF  MQ   + P++VT + ++SAC  +  +  G++       E  L   V   + ++D
Sbjct: 352 MILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVD 411

Query: 224 MYVKCGKLESAEEIFDSM-VNKTVVSCTTMIVGYAKFGFLDI----ARKIFDDLP 273
              + G++  A ++   +  N +     +++      G L++    A+K+FD  P
Sbjct: 412 TLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEP 466



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 313 VTTVH-CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFH 371
           V+ VH  L  C++   L  G   H  I       +++    L++MY+KCG++  A QVF 
Sbjct: 64  VSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD 123

Query: 372 EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431
           EMP R+ +++  +IG L  +G+  +A+    +M   G    E T   +L AC     + E
Sbjct: 124 EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE 183

Query: 432 GRKYFAQMSSIFRLSPKLKH----YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487
                 Q+   F +   +       + ++D+  + GL+++A  +  SMP    VV W ++
Sbjct: 184 -----CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP-DRSVVTWSSM 237


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 178/494 (36%), Positives = 274/494 (55%), Gaps = 31/494 (6%)

Query: 85  LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144
           L + CA       G    G V++LG + D    N +++++  CG +  AC VFDE   R+
Sbjct: 4   LLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERS 63

Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204
           +VSWN +I   V++G   +AI +F +MQ E     E T+  +V ACA   D+   R++H 
Sbjct: 64  MVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHA 123

Query: 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264
           +  ++ +   V +  AL+D+Y KCG +E A  +F+ M                       
Sbjct: 124 FAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGM----------------------- 160

Query: 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
                   PE+  V W++I+ G+VQ +  +E L LF   +  G++ +       + AC+ 
Sbjct: 161 --------PERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAG 212

Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
           L AL +G  +H  + +  F  N  + +ALVDMYAKCG+I +A  +F  + ++N + + AI
Sbjct: 213 LAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAI 272

Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
           I G A H  + + ++ F EM   G+ PDE+T++ +LSAC H GLVD+GR YF  M+    
Sbjct: 273 ISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHN 332

Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
           +SP + HYSCMVD+LGR GL+ EA +L+  MP AA   +WG+L  +CR+HGN+ + E AA
Sbjct: 333 VSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAA 392

Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
             L E++P   G YVLLAN Y  S  WEEA K RK ++   + K  G S IE+   ++ F
Sbjct: 393 KNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKERGKSWIEIKDKVHTF 452

Query: 565 IVRDKSHPELEQIY 578
           +  +++HP +  IY
Sbjct: 453 MAGERTHPRITDIY 466



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 177/362 (48%), Gaps = 34/362 (9%)

Query: 33  KILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASL 92
           K+   +   +  SWN+ I   ++ G+  +A+D++ +M R G    + FT   +   CA+ 
Sbjct: 54  KVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSE-FTVSSVVCACAAK 112

Query: 93  GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152
           G  F   ++    +K   D D++V  A+I V+  CG +  A  VF+    RN V+W+S++
Sbjct: 113 GDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIV 172

Query: 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT 212
            GFV++    E + LF   +   +E ++  +  ++ ACA L  L  GR++H  +  +G  
Sbjct: 173 AGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFG 232

Query: 213 LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272
               +A+AL+DMY KCG +E A  +F ++  K VV    +I G+AK              
Sbjct: 233 PNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHAC----------- 281

Query: 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332
                               S E + LF EMQ TG++PD VT V  LSAC  +G +D G 
Sbjct: 282 --------------------SSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGR 321

Query: 333 WIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLAL 390
                + +E N + NV+  + +VD+  + G + +A ++  +MP    +  + +++    +
Sbjct: 322 SYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRI 381

Query: 391 HG 392
           HG
Sbjct: 382 HG 383



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 130/276 (47%), Gaps = 14/276 (5%)

Query: 42  NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
           N  +W+  + GF++     E + L+ +  +  G   + F    + + CA L     G ++
Sbjct: 164 NDVTWSSIVAGFVQNELYEEGLVLFARG-KEMGLENNQFMISSVIRACAGLAALIEGRQV 222

Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
              V + GF  + +V +A++ ++  CG +  A  +F     +N+V WN++I+GF +    
Sbjct: 223 HAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACS 282

Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGRE-IHWYISESGLTLTVPLANA 220
            E + LF +MQ   ++PDEVT + ++SAC  +  ++ GR        E  ++  V   + 
Sbjct: 283 SEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSC 342

Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF-GFLDI----ARKIFDDLPEK 275
           ++D+  + G +  A E+   M      S    ++   +  G L++    A+ +F+  P++
Sbjct: 343 MVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDR 402

Query: 276 ---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
              YV+  N     Y  +K+ +EA      ++ + I
Sbjct: 403 GGNYVLLANT----YAASKKWEEAAKARKSLKGSEI 434


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 178/506 (35%), Positives = 285/506 (56%), Gaps = 41/506 (8%)

Query: 77  PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNV 136
           P   +Y  +F+    L +  LG+++  H+L  G      V + ++  + S GD+  + +V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 137 FDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196
           F               NG                        D  T   ++ +  +L  +
Sbjct: 128 F---------------NGI----------------------GDYFTFPFVLKSSVELLSV 150

Query: 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGY 256
            +G+ +H  I   GL   + +A +L+ +Y KCG++  A ++FD+M  + V S   ++ GY
Sbjct: 151 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 210

Query: 257 AKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM--QATGIKPDAVT 314
            K G +D A  IF+ +P + +V W  +I GY Q+  +++AL+LF EM  + +G++P+ VT
Sbjct: 211 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 270

Query: 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374
            +  L AC+QL  L+ G  IH    +   N N  +  AL  MYAKCG++  A   F ++ 
Sbjct: 271 IMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLN 330

Query: 375 --ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432
             E+N + +  +I   A +G  L A+S F EMI  G+ PD+ITF G+LS C H GLVD G
Sbjct: 331 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 390

Query: 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
            KYF  MS+ + ++P+++HY+C+ DLLGR+G L EA +L+  MPM A   +WG+L  ACR
Sbjct: 391 LKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 450

Query: 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552
            H N+ + E AA KL  L+P+++G YVLL+NMY ++  W+E  K+R +++ +G +K+PGC
Sbjct: 451 KHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGC 510

Query: 553 SSIEVNGLLYEFIVRDKSHPELEQIY 578
           S IE+NG  + F+  D SHP+ ++IY
Sbjct: 511 SWIEINGKAHMFLGGDTSHPQGKEIY 536



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 16/299 (5%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLR-NGGTRPDNFT 81
           ++S  +D    I   +   N  SW   I G+ ++G  ++A+ L+ +M++ + G RP+  T
Sbjct: 211 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 270

Query: 82  YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE-- 139
              +   CA L     G +I     ++G + +  V  A+  ++  CG L  A N FD+  
Sbjct: 271 IMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLN 330

Query: 140 SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199
              +NL++WN++I  +   G   +A+  FR+M    ++PD++T  G++S C+    +++G
Sbjct: 331 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 390

Query: 200 REIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC-TTMIVGYA 257
            +   ++S +  +   V     + D+  + G+L  A ++   M      S   +++    
Sbjct: 391 LKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 450

Query: 258 KFGFLDI----ARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309
           K   L++    ARK+F   PE    YV+  N     Y +A R +E   L   +++ G K
Sbjct: 451 KHRNLEMAETAARKLFVLEPENTGNYVLLSNM----YAEAGRWQEVDKLRAIVKSQGTK 505


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 294/552 (53%), Gaps = 65/552 (11%)

Query: 60  REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
           +E ++    + R GG  P     PL+ K CA       G +   H L  G   D++V  A
Sbjct: 60  QELIEAVSSLHRRGGAIPSG-CIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTA 118

Query: 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG-----------FPR------ 162
           ++  +   G++  A   F+E  +++ +  N LI G+ RSG            PR      
Sbjct: 119 LVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASW 178

Query: 163 --------------EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
                         EA+ LF  M  E   P+ +T+  + S CA+  DL  GR    ++SE
Sbjct: 179 NSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSE 238

Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
             L   V +  ALM+MYVKC  +                               D AR+ 
Sbjct: 239 EDLQ-NVIVHTALMEMYVKCRAI-------------------------------DEARRE 266

Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
           FD +P + VV W+ +I GY    R  E+L LF  M+AT  KP+ VT V  LSAC+QLG+ 
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
           + G  I  +IE +   L   LG+AL+DMY KCG++A+A  VFH M ++  + + ++I GL
Sbjct: 327 ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGL 386

Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM-SSIFRLSP 447
           AL+G A DAI+ + EM+G G+ P+EITFL +L+AC H GLVD+G  +F +M  +    SP
Sbjct: 387 ALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASP 446

Query: 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507
           +++H +C+VDLL +SG L EA + I  M +  + V+W  L  ACR H +V + + AA KL
Sbjct: 447 QVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKL 506

Query: 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVR 567
           + L+P  S IYVLL+N+Y D+ +W +  ++R +M  + ++K    S IE++G ++ F+V+
Sbjct: 507 VVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQ 566

Query: 568 DKSHPELEQIYD 579
           D  HP   +IY+
Sbjct: 567 DTYHPRSAEIYN 578



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 189/373 (50%), Gaps = 36/373 (9%)

Query: 23  SESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82
           S S +++   ++  ++    S SWN  I  +   G+ +EA+ L+ QMLR G + P+  T 
Sbjct: 155 SRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS-PNAITI 213

Query: 83  PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV 142
             +F +CA  G    G      V +     ++ VH A++ ++V C  +  A   FD    
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPR 272

Query: 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202
           R++V+W+++I G+  +G P E++ LF  M+    +P+EVT++G++SACAQL    LG +I
Sbjct: 273 RDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQI 332

Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
             YI    L LT  L +AL+DMY KCG +  A ++F  M  K V++  +MI G A  GF 
Sbjct: 333 GSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGF- 391

Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
                                         +++A+AL+ EM   G++P+ +T +  L+AC
Sbjct: 392 ------------------------------AEDAIALYGEMVGDGVQPNEITFLALLTAC 421

Query: 323 SQLGALDDGIWIHRFIE--KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSL 379
           +  G +D G+   + ++  K++ +  V     +VD+  K G + +A +   +M  E N++
Sbjct: 422 THAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAV 481

Query: 380 TYTAIIGGLALHG 392
            +T ++     H 
Sbjct: 482 IWTTLLSACRAHA 494


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.140    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,089,817,002
Number of Sequences: 23463169
Number of extensions: 379774680
Number of successful extensions: 1341646
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9835
Number of HSP's successfully gapped in prelim test: 2351
Number of HSP's that attempted gapping in prelim test: 1105791
Number of HSP's gapped (non-prelim): 68332
length of query: 588
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 440
effective length of database: 8,886,646,355
effective search space: 3910124396200
effective search space used: 3910124396200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)