Query 007818
Match_columns 588
No_of_seqs 606 out of 3194
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 15:45:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-85 3E-90 699.1 66.2 581 3-588 114-764 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5.9E-76 1.3E-80 610.6 62.1 518 40-588 84-601 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-68 4.3E-73 567.8 54.7 541 2-557 78-632 (857)
4 PLN03218 maturation of RBCL 1; 100.0 7.6E-65 1.6E-69 528.8 53.8 521 40-568 367-933 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.5E-61 3.3E-66 504.2 50.4 495 7-511 367-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1E-58 2.3E-63 481.7 43.8 409 3-448 151-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-33 2.3E-38 309.6 57.1 525 7-546 326-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.7E-33 1.2E-37 303.9 57.6 520 9-542 362-898 (899)
9 PRK11447 cellulose synthase su 100.0 6.6E-25 1.4E-29 240.0 56.0 522 7-543 59-739 (1157)
10 PRK11447 cellulose synthase su 100.0 3.2E-25 7E-30 242.5 53.5 517 16-543 34-699 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.1E-23 4.6E-28 217.7 54.4 512 12-545 44-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.5E-21 1.4E-25 199.2 51.8 523 7-549 75-745 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 9.5E-22 2.1E-26 182.6 33.0 378 145-533 116-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.7E-20 3.7E-25 174.4 33.1 420 117-545 51-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1E-19 2.2E-24 187.3 42.5 419 119-545 132-572 (615)
16 KOG2002 TPR-containing nuclear 99.9 1E-18 2.2E-23 171.2 37.9 430 112-547 268-748 (1018)
17 PRK10049 pgaA outer membrane p 99.9 1.3E-17 2.8E-22 174.8 44.2 408 83-516 19-462 (765)
18 PRK11788 tetratricopeptide rep 99.9 1.8E-19 4E-24 176.3 28.4 299 222-552 42-355 (389)
19 PRK10049 pgaA outer membrane p 99.9 9.7E-18 2.1E-22 175.8 42.0 404 111-545 12-457 (765)
20 PRK15174 Vi polysaccharide exp 99.9 4.2E-18 9.1E-23 174.6 38.0 409 125-587 16-441 (656)
21 KOG2002 TPR-containing nuclear 99.8 5.1E-17 1.1E-21 159.5 40.2 514 28-546 146-711 (1018)
22 PRK11788 tetratricopeptide rep 99.8 1.2E-18 2.5E-23 170.6 29.2 288 157-449 47-353 (389)
23 PRK14574 hmsH outer membrane p 99.8 4.4E-16 9.6E-21 160.0 47.1 441 50-518 41-521 (822)
24 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.8E-21 164.5 43.7 417 84-516 132-577 (615)
25 PRK15174 Vi polysaccharide exp 99.8 1.6E-17 3.4E-22 170.4 35.5 357 156-547 16-384 (656)
26 PRK14574 hmsH outer membrane p 99.8 5.6E-16 1.2E-20 159.2 43.6 432 86-544 41-513 (822)
27 KOG2003 TPR repeat-containing 99.8 8.2E-17 1.8E-21 144.7 27.5 460 48-531 206-710 (840)
28 KOG0495 HAT repeat protein [RN 99.8 9E-14 1.9E-18 131.0 46.7 454 91-559 388-893 (913)
29 KOG4422 Uncharacterized conser 99.8 4.9E-15 1.1E-19 132.5 34.1 405 80-548 117-594 (625)
30 KOG4422 Uncharacterized conser 99.8 6.5E-15 1.4E-19 131.7 32.9 373 37-475 201-587 (625)
31 KOG2076 RNA polymerase III tra 99.8 5.6E-14 1.2E-18 137.6 41.1 518 25-545 152-850 (895)
32 KOG1915 Cell cycle control pro 99.7 1.3E-13 2.7E-18 125.2 36.4 534 42-586 72-670 (677)
33 KOG0495 HAT repeat protein [RN 99.7 6.9E-12 1.5E-16 118.6 45.6 482 26-525 390-895 (913)
34 KOG2076 RNA polymerase III tra 99.7 1.9E-12 4E-17 127.1 42.2 494 46-543 142-768 (895)
35 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 148.3 10.9 257 283-543 14-276 (280)
36 KOG0547 Translocase of outer m 99.7 2E-13 4.3E-18 124.5 30.6 387 150-543 120-565 (606)
37 KOG4318 Bicoid mRNA stability 99.7 4E-14 8.6E-19 137.9 25.4 529 3-549 18-813 (1088)
38 KOG1155 Anaphase-promoting com 99.7 1.3E-12 2.9E-17 118.5 31.6 330 210-543 159-494 (559)
39 KOG2003 TPR repeat-containing 99.6 4.1E-13 8.8E-18 121.3 27.5 430 116-554 203-698 (840)
40 KOG1915 Cell cycle control pro 99.6 2.1E-11 4.5E-16 111.1 36.6 446 86-542 80-583 (677)
41 KOG1173 Anaphase-promoting com 99.6 2.1E-11 4.5E-16 113.8 34.5 482 41-544 14-518 (611)
42 PRK10747 putative protoheme IX 99.6 1.7E-12 3.7E-17 125.7 28.4 247 287-543 128-389 (398)
43 PRK10747 putative protoheme IX 99.6 7.7E-12 1.7E-16 121.1 30.8 248 257-511 129-391 (398)
44 KOG2047 mRNA splicing factor [ 99.6 1.2E-09 2.6E-14 103.6 43.6 481 45-537 104-716 (835)
45 TIGR00540 hemY_coli hemY prote 99.5 6.8E-12 1.5E-16 122.3 28.0 292 157-510 96-399 (409)
46 KOG3785 Uncharacterized conser 99.5 3.7E-11 8.1E-16 105.4 28.9 209 362-587 338-552 (557)
47 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.3E-17 124.8 20.9 195 347-546 421-622 (638)
48 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.5E-17 124.6 21.1 249 291-544 333-586 (638)
49 KOG1155 Anaphase-promoting com 99.5 7.7E-11 1.7E-15 107.3 31.3 356 112-511 162-537 (559)
50 TIGR00540 hemY_coli hemY prote 99.5 2.2E-11 4.8E-16 118.7 30.3 253 285-543 126-398 (409)
51 KOG0547 Translocase of outer m 99.5 2.2E-10 4.9E-15 105.0 33.3 412 46-512 118-568 (606)
52 COG2956 Predicted N-acetylgluc 99.5 4.6E-11 9.9E-16 103.7 25.4 279 158-441 48-346 (389)
53 PF13429 TPR_15: Tetratricopep 99.5 9.2E-14 2E-18 128.6 9.7 226 317-545 13-244 (280)
54 KOG4318 Bicoid mRNA stability 99.5 2.3E-10 5E-15 112.3 32.6 267 65-359 12-283 (1088)
55 COG3071 HemY Uncharacterized e 99.5 5.5E-11 1.2E-15 106.5 26.1 252 284-543 125-389 (400)
56 KOG2376 Signal recognition par 99.5 2.2E-09 4.7E-14 101.0 37.3 452 48-541 17-517 (652)
57 COG3071 HemY Uncharacterized e 99.5 4E-10 8.7E-15 101.1 29.1 289 158-509 97-389 (400)
58 COG2956 Predicted N-acetylgluc 99.4 5.7E-10 1.2E-14 97.0 27.4 223 193-441 48-277 (389)
59 KOG1173 Anaphase-promoting com 99.4 7E-10 1.5E-14 103.8 29.7 272 252-526 250-534 (611)
60 TIGR02521 type_IV_pilW type IV 99.4 4.3E-11 9.3E-16 108.2 21.8 197 347-544 31-232 (234)
61 KOG4162 Predicted calmodulin-b 99.4 5.2E-09 1.1E-13 101.7 36.1 129 415-545 652-784 (799)
62 KOG1129 TPR repeat-containing 99.4 1.8E-11 3.9E-16 106.2 16.8 231 311-546 222-460 (478)
63 KOG2047 mRNA splicing factor [ 99.4 4.8E-08 1E-12 93.1 38.2 460 80-545 103-688 (835)
64 KOG1174 Anaphase-promoting com 99.4 2.2E-08 4.8E-13 90.2 33.3 269 245-519 231-509 (564)
65 COG3063 PilF Tfp pilus assembl 99.3 1.5E-10 3.2E-15 96.0 17.2 163 381-546 38-204 (250)
66 KOG1156 N-terminal acetyltrans 99.3 2.4E-07 5.2E-12 88.7 37.7 409 126-543 53-510 (700)
67 PRK12370 invasion protein regu 99.3 1.4E-09 3.1E-14 110.2 24.4 246 292-546 276-537 (553)
68 KOG3785 Uncharacterized conser 99.3 1.5E-07 3.3E-12 83.2 32.1 454 50-550 29-496 (557)
69 PF12569 NARP1: NMDA receptor- 99.2 8.5E-08 1.9E-12 94.0 34.0 286 51-373 12-331 (517)
70 KOG1129 TPR repeat-containing 99.2 2.3E-10 5E-15 99.5 14.2 230 281-515 227-463 (478)
71 TIGR02521 type_IV_pilW type IV 99.2 1.1E-09 2.4E-14 98.9 19.9 164 378-544 31-198 (234)
72 PF13041 PPR_2: PPR repeat fam 99.2 1.7E-11 3.8E-16 78.9 5.6 50 143-192 1-50 (50)
73 KOG1840 Kinesin light chain [C 99.2 1.4E-09 3.1E-14 104.9 20.9 229 314-542 201-477 (508)
74 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-09 2.8E-14 101.0 19.2 148 290-440 39-192 (296)
75 KOG1156 N-terminal acetyltrans 99.2 5.8E-07 1.3E-11 86.1 36.5 452 12-475 10-508 (700)
76 KOG0985 Vesicle coat protein c 99.2 1.7E-06 3.6E-11 87.0 40.7 497 11-541 607-1246(1666)
77 KOG3616 Selective LIM binding 99.2 1.6E-07 3.4E-12 91.0 32.6 188 286-503 741-930 (1636)
78 PRK12370 invasion protein regu 99.2 2.3E-09 4.9E-14 108.8 21.5 212 326-544 275-502 (553)
79 PF13041 PPR_2: PPR repeat fam 99.2 5.7E-11 1.2E-15 76.5 5.7 50 41-91 1-50 (50)
80 KOG3617 WD40 and TPR repeat-co 99.2 1.5E-06 3.2E-11 85.5 37.6 203 8-241 755-993 (1416)
81 KOG1174 Anaphase-promoting com 99.2 6.2E-07 1.3E-11 81.2 32.0 265 275-546 230-502 (564)
82 KOG1840 Kinesin light chain [C 99.2 3.1E-08 6.7E-13 95.8 25.6 95 415-509 369-478 (508)
83 KOG2376 Signal recognition par 99.2 1.4E-06 3E-11 82.7 35.4 213 16-244 18-253 (652)
84 KOG3616 Selective LIM binding 99.1 7.9E-07 1.7E-11 86.3 34.1 350 151-539 738-1129(1636)
85 KOG4340 Uncharacterized conser 99.1 6.6E-07 1.4E-11 77.4 29.2 412 113-548 9-447 (459)
86 KOG4162 Predicted calmodulin-b 99.1 1.1E-06 2.5E-11 85.9 33.0 403 109-516 318-789 (799)
87 PF12569 NARP1: NMDA receptor- 99.1 6.8E-07 1.5E-11 87.8 32.2 281 17-305 11-333 (517)
88 KOG0985 Vesicle coat protein c 99.1 2.5E-05 5.4E-10 79.0 43.8 415 117-549 609-1167(1666)
89 COG3063 PilF Tfp pilus assembl 99.1 3.2E-08 7E-13 82.4 18.7 192 351-543 39-235 (250)
90 KOG0548 Molecular co-chaperone 99.1 3.5E-07 7.7E-12 85.8 27.7 249 280-540 227-485 (539)
91 PRK11189 lipoprotein NlpI; Pro 99.0 1.4E-07 3.1E-12 87.5 23.9 213 326-547 40-268 (296)
92 KOG0548 Molecular co-chaperone 99.0 5.1E-07 1.1E-11 84.7 26.9 413 87-545 10-456 (539)
93 KOG4340 Uncharacterized conser 99.0 1.3E-06 2.8E-11 75.7 25.4 190 13-213 13-211 (459)
94 KOG1127 TPR repeat-containing 99.0 1.2E-06 2.7E-11 88.0 28.6 129 414-543 968-1103(1238)
95 PF04733 Coatomer_E: Coatomer 99.0 6.3E-08 1.4E-12 88.3 18.6 156 354-516 109-271 (290)
96 PF04733 Coatomer_E: Coatomer 99.0 1.2E-08 2.7E-13 92.9 13.8 244 286-544 10-265 (290)
97 KOG0624 dsRNA-activated protei 99.0 7.4E-07 1.6E-11 78.7 23.3 294 220-519 43-379 (504)
98 KOG1125 TPR repeat-containing 98.9 2.3E-08 5E-13 94.3 14.9 117 427-543 408-526 (579)
99 PRK10370 formate-dependent nit 98.9 8.8E-08 1.9E-12 82.4 16.8 148 386-547 24-176 (198)
100 cd05804 StaR_like StaR_like; a 98.9 3.9E-06 8.4E-11 81.1 28.6 257 286-545 52-337 (355)
101 TIGR03302 OM_YfiO outer membra 98.9 1.6E-07 3.6E-12 84.5 17.6 181 346-545 32-233 (235)
102 KOG0624 dsRNA-activated protei 98.9 3.8E-06 8.2E-11 74.3 24.1 309 144-476 37-368 (504)
103 cd05804 StaR_like StaR_like; a 98.8 1.8E-05 4E-10 76.4 31.3 200 42-243 5-214 (355)
104 KOG1914 mRNA cleavage and poly 98.8 0.0001 2.3E-09 69.7 34.0 128 40-173 17-165 (656)
105 PRK15359 type III secretion sy 98.8 1.5E-07 3.2E-12 76.6 13.7 94 452-545 27-122 (144)
106 KOG1127 TPR repeat-containing 98.8 8.9E-06 1.9E-10 82.1 28.1 177 26-208 472-658 (1238)
107 KOG3617 WD40 and TPR repeat-co 98.8 2.5E-05 5.5E-10 77.2 30.1 163 24-206 812-993 (1416)
108 PRK04841 transcriptional regul 98.8 2.8E-05 6E-10 85.5 34.5 297 95-405 291-639 (903)
109 COG5010 TadD Flp pilus assembl 98.8 8.6E-07 1.9E-11 75.8 16.7 126 417-544 70-197 (257)
110 KOG2053 Mitochondrial inherita 98.8 0.0003 6.5E-09 70.8 36.3 215 24-244 21-255 (932)
111 KOG1070 rRNA processing protei 98.7 1.4E-06 3.1E-11 90.5 19.9 199 346-548 1457-1667(1710)
112 PRK15359 type III secretion sy 98.7 3.5E-07 7.5E-12 74.4 12.1 123 399-527 14-138 (144)
113 PRK15179 Vi polysaccharide bio 98.7 2.1E-06 4.6E-11 87.7 20.0 138 377-518 85-225 (694)
114 PRK15363 pathogenicity island 98.6 3.8E-07 8.3E-12 72.5 10.7 97 448-544 34-132 (157)
115 PLN02789 farnesyltranstransfer 98.6 7.4E-06 1.6E-10 75.9 20.7 188 362-554 87-310 (320)
116 KOG1128 Uncharacterized conser 98.6 2.2E-06 4.8E-11 83.5 17.1 212 316-545 402-617 (777)
117 PRK10370 formate-dependent nit 98.6 5.2E-06 1.1E-10 71.5 17.7 155 354-519 23-182 (198)
118 PF12854 PPR_1: PPR repeat 98.6 2.2E-08 4.9E-13 57.5 2.0 34 4-39 1-34 (34)
119 COG5010 TadD Flp pilus assembl 98.6 6.5E-06 1.4E-10 70.6 17.3 156 382-540 70-227 (257)
120 KOG1125 TPR repeat-containing 98.6 3.7E-06 8E-11 79.9 17.3 248 286-537 294-564 (579)
121 PRK04841 transcriptional regul 98.6 0.0002 4.3E-09 78.8 33.7 320 123-442 383-760 (903)
122 KOG3060 Uncharacterized conser 98.5 2.4E-05 5.3E-10 66.5 18.8 169 350-521 55-231 (289)
123 TIGR02552 LcrH_SycD type III s 98.5 1.9E-06 4.2E-11 69.9 12.3 97 449-545 17-115 (135)
124 KOG3060 Uncharacterized conser 98.5 7.6E-06 1.7E-10 69.5 15.3 168 381-551 55-227 (289)
125 PRK14720 transcript cleavage f 98.5 2.1E-05 4.5E-10 81.5 21.3 148 349-526 118-268 (906)
126 PLN02789 farnesyltranstransfer 98.5 2.1E-05 4.6E-10 72.9 19.6 189 354-545 44-251 (320)
127 KOG1128 Uncharacterized conser 98.5 5.7E-06 1.2E-10 80.8 15.8 187 344-545 395-583 (777)
128 COG4783 Putative Zn-dependent 98.5 3.1E-05 6.6E-10 72.5 19.4 112 425-538 318-431 (484)
129 KOG1070 rRNA processing protei 98.5 3.7E-05 8.1E-10 80.5 21.8 199 214-413 1457-1669(1710)
130 TIGR03302 OM_YfiO outer membra 98.4 1.4E-05 3.1E-10 72.0 16.9 182 310-512 31-234 (235)
131 KOG3081 Vesicle coat complex C 98.4 0.00013 2.8E-09 62.7 20.8 155 354-515 115-276 (299)
132 PF12854 PPR_1: PPR repeat 98.4 4E-07 8.8E-12 52.3 3.8 32 444-475 2-33 (34)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.9E-06 1.7E-10 77.2 14.0 123 415-542 171-295 (395)
134 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.6E-10 65.1 13.4 115 400-518 5-122 (135)
135 KOG3081 Vesicle coat complex C 98.3 0.0001 2.2E-09 63.3 18.1 247 1-262 1-257 (299)
136 COG4783 Putative Zn-dependent 98.3 7.8E-05 1.7E-09 69.9 18.9 143 381-545 309-455 (484)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.5E-05 5.3E-10 74.0 15.0 128 348-478 170-297 (395)
138 PRK15179 Vi polysaccharide bio 98.3 0.00017 3.7E-09 74.2 22.0 142 343-487 82-228 (694)
139 PF13414 TPR_11: TPR repeat; P 98.3 2.3E-06 5.1E-11 59.7 6.2 66 480-545 2-68 (69)
140 PF09976 TPR_21: Tetratricopep 98.3 4.6E-05 1E-09 62.3 14.3 113 426-541 24-144 (145)
141 PF12895 Apc3: Anaphase-promot 98.2 1.8E-06 3.8E-11 63.0 4.5 78 462-540 2-83 (84)
142 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.4E-05 5.2E-10 61.7 11.1 95 451-545 4-106 (119)
143 PF13432 TPR_16: Tetratricopep 98.2 4.7E-06 1E-10 57.3 6.0 59 487-545 3-61 (65)
144 PF09976 TPR_21: Tetratricopep 98.2 0.00016 3.4E-09 59.2 15.5 125 381-508 15-145 (145)
145 cd00189 TPR Tetratricopeptide 98.1 2.8E-05 6E-10 58.5 10.2 94 452-545 3-98 (100)
146 PRK14720 transcript cleavage f 98.1 0.00082 1.8E-08 70.1 23.4 238 40-322 28-267 (906)
147 KOG1914 mRNA cleavage and poly 98.1 0.0097 2.1E-07 56.9 33.6 202 329-533 310-528 (656)
148 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 48.3 4.5 35 146-180 1-35 (35)
149 COG4235 Cytochrome c biogenesi 98.1 9.1E-05 2E-09 65.5 13.0 107 446-552 153-264 (287)
150 KOG2053 Mitochondrial inherita 98.1 0.019 4.1E-07 58.5 37.7 133 53-191 19-155 (932)
151 PF13812 PPR_3: Pentatricopept 98.0 8.1E-06 1.8E-10 47.4 4.2 33 146-178 2-34 (34)
152 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00011 2.3E-09 58.0 11.5 106 415-520 4-115 (119)
153 PLN03088 SGT1, suppressor of 98.0 6.3E-05 1.4E-09 71.7 11.5 108 419-528 8-117 (356)
154 KOG2041 WD40 repeat protein [G 98.0 0.0058 1.3E-07 60.1 24.2 210 40-277 689-909 (1189)
155 PF13371 TPR_9: Tetratricopept 98.0 2.8E-05 6E-10 54.9 6.5 58 489-546 3-60 (73)
156 TIGR00756 PPR pentatricopeptid 98.0 1.9E-05 4.1E-10 46.2 4.6 34 379-412 1-34 (35)
157 PRK15331 chaperone protein Sic 98.0 0.00011 2.3E-09 59.1 10.0 92 452-543 40-133 (165)
158 KOG0553 TPR repeat-containing 97.9 7.4E-05 1.6E-09 65.6 9.9 107 423-531 91-199 (304)
159 PF14559 TPR_19: Tetratricopep 97.9 1.2E-05 2.5E-10 55.9 4.2 54 492-545 2-55 (68)
160 PRK02603 photosystem I assembl 97.9 0.00014 3E-09 61.6 11.3 97 449-545 35-150 (172)
161 KOG0553 TPR repeat-containing 97.9 4.2E-05 9.2E-10 67.1 7.7 91 457-547 89-181 (304)
162 PF05843 Suf: Suppressor of fo 97.9 0.00041 8.8E-09 63.7 14.4 134 379-515 2-141 (280)
163 PF13812 PPR_3: Pentatricopept 97.9 2.7E-05 5.9E-10 45.1 4.4 33 379-411 2-34 (34)
164 PLN03088 SGT1, suppressor of 97.9 0.00029 6.2E-09 67.2 13.2 103 383-488 7-110 (356)
165 COG4700 Uncharacterized protei 97.8 0.0029 6.2E-08 51.5 16.3 132 409-542 85-220 (251)
166 CHL00033 ycf3 photosystem I as 97.8 0.00023 4.9E-09 60.1 10.9 93 449-541 35-139 (168)
167 PRK02603 photosystem I assembl 97.8 0.00065 1.4E-08 57.5 13.1 129 378-529 35-165 (172)
168 KOG0550 Molecular chaperone (D 97.8 0.001 2.2E-08 61.1 14.2 158 386-547 177-353 (486)
169 PF13431 TPR_17: Tetratricopep 97.8 1.7E-05 3.7E-10 45.5 2.0 33 504-536 2-34 (34)
170 cd00189 TPR Tetratricopeptide 97.8 0.00038 8.2E-09 52.1 10.2 92 419-512 6-99 (100)
171 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.5E-09 53.4 6.7 78 392-473 3-82 (84)
172 PF13432 TPR_16: Tetratricopep 97.7 0.00011 2.4E-09 50.3 5.9 61 455-515 3-65 (65)
173 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.045 9.8E-07 51.3 29.9 134 378-514 397-535 (660)
174 PRK10153 DNA-binding transcrip 97.7 0.0017 3.7E-08 64.8 16.1 62 482-544 421-482 (517)
175 PF07079 DUF1347: Protein of u 97.7 0.054 1.2E-06 51.0 35.7 237 298-541 246-521 (549)
176 PF14938 SNAP: Soluble NSF att 97.7 0.003 6.4E-08 58.4 16.2 110 353-475 100-222 (282)
177 CHL00033 ycf3 photosystem I as 97.6 0.0028 6E-08 53.4 14.7 80 379-460 36-117 (168)
178 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 42.0 3.5 30 147-176 2-31 (31)
179 PRK10153 DNA-binding transcrip 97.6 0.0027 5.8E-08 63.4 16.1 141 374-516 333-488 (517)
180 PF08579 RPM2: Mitochondrial r 97.6 0.00083 1.8E-08 49.8 9.1 79 149-227 29-116 (120)
181 COG3898 Uncharacterized membra 97.6 0.064 1.4E-06 49.4 25.6 273 260-546 98-394 (531)
182 PRK10866 outer membrane biogen 97.6 0.0076 1.7E-07 53.9 16.8 57 487-543 181-240 (243)
183 PF12688 TPR_5: Tetratrico pep 97.5 0.0015 3.3E-08 50.5 10.2 89 454-542 6-102 (120)
184 PF14938 SNAP: Soluble NSF att 97.5 0.0093 2E-07 55.1 17.4 143 384-541 100-263 (282)
185 PF04840 Vps16_C: Vps16, C-ter 97.5 0.069 1.5E-06 49.7 22.8 83 218-302 180-262 (319)
186 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.7E-09 40.6 3.6 29 380-408 2-30 (31)
187 PF05843 Suf: Suppressor of fo 97.5 0.0014 2.9E-08 60.3 11.3 129 414-544 2-136 (280)
188 KOG2280 Vacuolar assembly/sort 97.5 0.14 3.1E-06 51.4 25.0 109 348-472 685-793 (829)
189 COG4700 Uncharacterized protei 97.5 0.0048 1E-07 50.2 12.6 114 439-552 79-197 (251)
190 PF06239 ECSIT: Evolutionarily 97.4 0.0017 3.7E-08 54.7 10.1 118 76-208 44-167 (228)
191 PF14559 TPR_19: Tetratricopep 97.4 0.0002 4.4E-09 49.6 4.2 49 425-475 3-51 (68)
192 KOG1538 Uncharacterized conser 97.4 0.016 3.5E-07 56.6 17.8 78 311-397 746-823 (1081)
193 PRK10803 tol-pal system protei 97.4 0.0016 3.5E-08 58.6 10.7 97 416-514 146-250 (263)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00072 1.6E-08 63.9 8.7 65 480-544 74-141 (453)
195 PF13428 TPR_14: Tetratricopep 97.4 0.00027 5.8E-09 43.7 4.0 42 482-523 2-43 (44)
196 KOG1538 Uncharacterized conser 97.4 0.015 3.3E-07 56.8 17.4 160 295-476 618-800 (1081)
197 PF08579 RPM2: Mitochondrial r 97.4 0.0024 5.3E-08 47.4 9.4 81 45-126 27-116 (120)
198 PF04840 Vps16_C: Vps16, C-ter 97.4 0.12 2.5E-06 48.2 27.7 121 349-489 179-299 (319)
199 PF10037 MRP-S27: Mitochondria 97.4 0.0035 7.5E-08 60.0 13.0 120 307-426 61-186 (429)
200 PF13414 TPR_11: TPR repeat; P 97.4 0.00051 1.1E-08 47.7 5.8 65 448-512 2-69 (69)
201 PRK15363 pathogenicity island 97.4 0.0034 7.4E-08 50.4 10.9 83 388-473 45-127 (157)
202 PF10037 MRP-S27: Mitochondria 97.4 0.0023 5.1E-08 61.1 11.4 118 111-228 63-186 (429)
203 PF12688 TPR_5: Tetratrico pep 97.3 0.0065 1.4E-07 47.0 11.6 92 383-474 6-100 (120)
204 PRK10866 outer membrane biogen 97.3 0.066 1.4E-06 47.9 19.4 67 41-110 30-100 (243)
205 PF03704 BTAD: Bacterial trans 97.3 0.0034 7.4E-08 51.4 10.4 69 483-551 64-137 (146)
206 PRK10803 tol-pal system protei 97.2 0.0048 1E-07 55.6 11.6 94 451-544 145-246 (263)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.19 4.2E-06 47.4 27.1 140 348-492 398-546 (660)
208 PF13281 DUF4071: Domain of un 97.2 0.093 2E-06 49.4 19.9 183 351-547 145-360 (374)
209 COG3898 Uncharacterized membra 97.2 0.19 4.2E-06 46.5 27.2 288 45-341 84-392 (531)
210 KOG1130 Predicted G-alpha GTPa 97.2 0.0033 7.1E-08 57.8 9.7 129 414-542 196-342 (639)
211 PF13424 TPR_12: Tetratricopep 97.1 0.00077 1.7E-08 48.2 4.6 62 482-543 6-74 (78)
212 COG4235 Cytochrome c biogenesi 97.1 0.029 6.3E-07 50.1 15.1 104 410-515 153-261 (287)
213 KOG2796 Uncharacterized conser 97.1 0.027 5.8E-07 48.9 14.0 132 381-513 180-318 (366)
214 KOG0550 Molecular chaperone (D 97.1 0.2 4.3E-06 46.8 20.3 85 388-475 259-347 (486)
215 PF13371 TPR_9: Tetratricopept 97.1 0.0023 5.1E-08 44.9 6.5 65 456-520 2-68 (73)
216 PF13512 TPR_18: Tetratricopep 97.0 0.02 4.4E-07 45.2 11.6 91 454-544 15-128 (142)
217 KOG2796 Uncharacterized conser 97.0 0.042 9.1E-07 47.7 14.0 128 280-407 180-315 (366)
218 PF06239 ECSIT: Evolutionarily 97.0 0.0063 1.4E-07 51.4 8.8 88 275-362 45-153 (228)
219 PF13525 YfiO: Outer membrane 97.0 0.018 3.8E-07 50.2 12.2 50 487-536 147-199 (203)
220 PF13525 YfiO: Outer membrane 96.8 0.065 1.4E-06 46.7 14.9 141 383-544 10-170 (203)
221 KOG0543 FKBP-type peptidyl-pro 96.7 0.0066 1.4E-07 56.2 8.0 127 418-544 213-355 (397)
222 PRK11906 transcriptional regul 96.6 0.05 1.1E-06 52.0 12.8 118 394-513 274-404 (458)
223 PF10300 DUF3808: Protein of u 96.6 0.16 3.5E-06 50.5 17.0 160 381-543 191-375 (468)
224 COG3118 Thioredoxin domain-con 96.5 0.11 2.4E-06 46.3 13.8 121 422-545 143-266 (304)
225 PF13424 TPR_12: Tetratricopep 96.5 0.0048 1E-07 44.0 4.7 61 450-510 6-75 (78)
226 PF07079 DUF1347: Protein of u 96.5 0.78 1.7E-05 43.6 37.9 87 394-485 437-529 (549)
227 KOG0543 FKBP-type peptidyl-pro 96.5 0.032 6.9E-07 51.9 10.8 128 384-513 214-358 (397)
228 PF09205 DUF1955: Domain of un 96.5 0.14 3E-06 39.4 12.1 141 388-547 12-152 (161)
229 COG3118 Thioredoxin domain-con 96.5 0.26 5.7E-06 44.0 15.7 172 365-538 121-295 (304)
230 COG1729 Uncharacterized protei 96.4 0.036 7.9E-07 48.8 10.0 100 415-517 144-251 (262)
231 COG1729 Uncharacterized protei 96.3 0.032 7E-07 49.1 9.3 91 451-544 144-244 (262)
232 KOG4555 TPR repeat-containing 96.1 0.069 1.5E-06 40.9 8.8 90 457-546 51-146 (175)
233 PRK15331 chaperone protein Sic 96.1 0.095 2.1E-06 42.6 10.2 84 389-475 48-131 (165)
234 PF13281 DUF4071: Domain of un 96.1 0.5 1.1E-05 44.6 16.4 166 379-545 142-335 (374)
235 KOG2041 WD40 repeat protein [G 96.1 1.8 4E-05 43.5 27.7 156 193-376 747-907 (1189)
236 KOG4234 TPR repeat-containing 96.1 0.024 5.3E-07 46.9 6.7 60 485-544 138-197 (271)
237 KOG2610 Uncharacterized conser 96.0 0.097 2.1E-06 47.2 10.4 160 389-551 114-283 (491)
238 PF04053 Coatomer_WDAD: Coatom 95.9 0.33 7.2E-06 47.6 15.2 155 153-335 269-425 (443)
239 PF07719 TPR_2: Tetratricopept 95.9 0.024 5.3E-07 32.3 4.6 32 483-514 3-34 (34)
240 PF03704 BTAD: Bacterial trans 95.9 0.078 1.7E-06 43.3 9.3 69 382-451 66-138 (146)
241 PF12921 ATP13: Mitochondrial 95.8 0.13 2.8E-06 40.3 9.8 98 347-460 2-99 (126)
242 PRK11906 transcriptional regul 95.8 0.57 1.2E-05 45.1 15.7 81 395-479 321-403 (458)
243 KOG4555 TPR repeat-containing 95.8 0.029 6.4E-07 42.8 5.7 55 490-544 52-106 (175)
244 PF00515 TPR_1: Tetratricopept 95.7 0.021 4.6E-07 32.6 3.9 31 483-513 3-33 (34)
245 COG4105 ComL DNA uptake lipopr 95.7 1.4 3E-05 38.9 19.7 63 487-550 173-238 (254)
246 PF02259 FAT: FAT domain; Int 95.6 2.3 5E-05 40.9 19.9 150 376-528 144-305 (352)
247 PF13512 TPR_18: Tetratricopep 95.6 0.45 9.9E-06 37.8 11.8 117 385-517 17-135 (142)
248 KOG2280 Vacuolar assembly/sort 95.6 3.1 6.8E-05 42.4 36.0 112 411-538 682-793 (829)
249 KOG2610 Uncharacterized conser 95.6 0.44 9.5E-06 43.2 12.9 157 358-518 114-286 (491)
250 COG0457 NrfG FOG: TPR repeat [ 95.5 1.6 3.5E-05 38.8 25.5 196 348-545 60-266 (291)
251 PF04053 Coatomer_WDAD: Coatom 95.4 0.51 1.1E-05 46.3 14.3 159 50-241 268-428 (443)
252 KOG2114 Vacuolar assembly/sort 95.4 3.9 8.6E-05 42.3 25.1 109 51-167 376-485 (933)
253 KOG1941 Acetylcholine receptor 95.4 0.15 3.2E-06 46.6 9.6 129 382-510 126-275 (518)
254 COG4785 NlpI Lipoprotein NlpI, 95.4 1.1 2.4E-05 38.1 13.8 162 378-546 99-268 (297)
255 KOG2114 Vacuolar assembly/sort 95.4 4.1 8.8E-05 42.2 24.9 138 154-303 377-516 (933)
256 PF08631 SPO22: Meiosis protei 95.4 2.3 4.9E-05 39.2 21.6 99 314-413 86-192 (278)
257 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.21 4.6E-06 47.8 10.9 66 40-108 72-141 (453)
258 COG4105 ComL DNA uptake lipopr 95.3 0.64 1.4E-05 40.9 12.8 160 48-208 39-232 (254)
259 PF13176 TPR_7: Tetratricopept 95.2 0.042 9.2E-07 31.9 3.8 26 517-542 1-26 (36)
260 PF12921 ATP13: Mitochondrial 95.2 0.25 5.5E-06 38.7 9.2 26 43-68 2-27 (126)
261 KOG3941 Intermediate in Toll s 95.1 0.18 3.8E-06 44.5 8.9 99 30-129 52-173 (406)
262 PRK11619 lytic murein transgly 95.1 4.9 0.00011 41.9 30.6 18 155-172 43-60 (644)
263 KOG1130 Predicted G-alpha GTPa 95.0 0.53 1.1E-05 44.0 11.9 154 379-532 196-372 (639)
264 KOG1920 IkappaB kinase complex 94.9 6.8 0.00015 42.5 24.1 118 350-478 911-1028(1265)
265 KOG1585 Protein required for f 94.9 2.3 5.1E-05 37.0 15.8 89 450-539 151-251 (308)
266 PF04184 ST7: ST7 protein; In 94.9 1.3 2.9E-05 42.9 14.6 151 388-550 178-330 (539)
267 COG0457 NrfG FOG: TPR repeat [ 94.8 2.7 5.8E-05 37.3 24.5 218 292-513 38-268 (291)
268 PF04184 ST7: ST7 protein; In 94.8 3.3 7.1E-05 40.3 16.9 16 499-514 364-379 (539)
269 PF13428 TPR_14: Tetratricopep 94.8 0.063 1.4E-06 32.9 4.0 32 515-546 1-32 (44)
270 PF10300 DUF3808: Protein of u 94.7 0.8 1.7E-05 45.7 13.6 157 48-207 193-374 (468)
271 PF09205 DUF1955: Domain of un 94.7 1.6 3.5E-05 33.9 13.1 63 381-445 89-151 (161)
272 smart00299 CLH Clathrin heavy 94.6 1.9 4.2E-05 34.7 14.7 42 84-126 12-53 (140)
273 PRK09687 putative lyase; Provi 94.4 4.1 8.8E-05 37.5 24.4 25 487-512 241-265 (280)
274 KOG1258 mRNA processing protei 94.4 6.1 0.00013 39.4 31.9 415 42-529 44-489 (577)
275 KOG3941 Intermediate in Toll s 94.3 0.39 8.5E-06 42.4 9.0 99 276-374 66-186 (406)
276 KOG1585 Protein required for f 94.1 3.6 7.8E-05 35.9 15.3 202 280-504 34-250 (308)
277 PF07719 TPR_2: Tetratricopept 94.0 0.089 1.9E-06 29.9 3.3 30 516-545 2-31 (34)
278 KOG1941 Acetylcholine receptor 93.9 1.4 3E-05 40.6 12.0 218 258-475 18-272 (518)
279 KOG1920 IkappaB kinase complex 93.9 12 0.00025 40.8 21.0 140 219-374 912-1053(1265)
280 PF13181 TPR_8: Tetratricopept 93.7 0.14 3E-06 29.1 3.7 29 484-512 4-32 (34)
281 COG4649 Uncharacterized protei 93.5 1.5 3.2E-05 35.9 10.2 16 229-244 72-87 (221)
282 PF00515 TPR_1: Tetratricopept 93.5 0.13 2.8E-06 29.3 3.3 30 516-545 2-31 (34)
283 PF07035 Mic1: Colon cancer-as 93.3 4.1 8.9E-05 33.7 13.9 35 165-199 14-48 (167)
284 PRK15180 Vi polysaccharide bio 93.2 1.4 3.1E-05 42.2 11.3 97 457-553 331-429 (831)
285 COG3629 DnrI DNA-binding trans 93.2 0.49 1.1E-05 42.7 8.1 57 486-542 158-214 (280)
286 PF02259 FAT: FAT domain; Int 93.2 3.9 8.4E-05 39.3 15.2 68 479-546 144-215 (352)
287 PF13176 TPR_7: Tetratricopept 93.2 0.16 3.5E-06 29.4 3.4 27 483-509 1-27 (36)
288 PF09613 HrpB1_HrpK: Bacterial 92.7 1.4 3E-05 35.9 9.1 90 420-512 17-108 (160)
289 PF07721 TPR_4: Tetratricopept 92.5 0.19 4E-06 26.6 2.8 24 516-539 2-25 (26)
290 KOG1258 mRNA processing protei 92.4 13 0.00028 37.3 30.5 125 25-151 58-188 (577)
291 COG3947 Response regulator con 92.4 7.7 0.00017 34.9 13.9 60 483-542 281-340 (361)
292 PF00637 Clathrin: Region in C 92.3 0.018 4E-07 46.9 -2.0 83 318-403 13-95 (143)
293 smart00299 CLH Clathrin heavy 92.2 5.2 0.00011 32.2 15.9 43 149-192 11-53 (140)
294 KOG0890 Protein kinase of the 92.2 31 0.00066 41.0 30.6 309 220-548 1388-1735(2382)
295 KOG4648 Uncharacterized conser 92.0 0.38 8.2E-06 43.7 5.7 96 419-516 103-200 (536)
296 COG2976 Uncharacterized protei 92.0 5.8 0.00013 33.4 12.0 24 521-544 165-188 (207)
297 PF09613 HrpB1_HrpK: Bacterial 91.9 1.3 2.7E-05 36.1 8.0 83 450-532 8-95 (160)
298 PRK10941 hypothetical protein; 91.7 1 2.3E-05 40.7 8.2 62 484-545 184-245 (269)
299 TIGR02561 HrpB1_HrpK type III 91.6 1.3 2.8E-05 35.4 7.5 83 450-532 8-95 (153)
300 TIGR02561 HrpB1_HrpK type III 91.4 1.7 3.6E-05 34.7 8.0 109 414-542 8-120 (153)
301 PF13174 TPR_6: Tetratricopept 91.2 0.46 1E-05 26.5 3.8 26 518-543 3-28 (33)
302 COG2976 Uncharacterized protei 91.2 8.3 0.00018 32.5 13.0 114 396-513 70-191 (207)
303 PF11207 DUF2989: Protein of u 91.2 1.9 4.1E-05 36.5 8.6 76 459-535 117-198 (203)
304 PF10602 RPN7: 26S proteasome 91.1 2.6 5.7E-05 35.5 9.7 95 380-476 38-140 (177)
305 PF13181 TPR_8: Tetratricopept 91.1 0.49 1.1E-05 26.8 3.8 29 516-544 2-30 (34)
306 PF07035 Mic1: Colon cancer-as 91.0 8 0.00017 32.0 12.6 132 64-208 15-148 (167)
307 PF13174 TPR_6: Tetratricopept 90.9 0.33 7.2E-06 27.2 3.0 31 484-514 3-33 (33)
308 KOG1550 Extracellular protein 90.9 22 0.00047 36.7 20.0 247 289-545 261-539 (552)
309 PF13374 TPR_10: Tetratricopep 90.9 0.47 1E-05 28.4 3.8 28 516-543 3-30 (42)
310 KOG1586 Protein required for f 90.8 11 0.00023 33.0 14.7 23 492-514 165-187 (288)
311 COG1747 Uncharacterized N-term 90.8 18 0.00038 35.6 18.4 175 42-225 65-249 (711)
312 COG3629 DnrI DNA-binding trans 90.5 2.9 6.2E-05 37.9 9.7 76 382-458 157-236 (280)
313 PF06552 TOM20_plant: Plant sp 90.3 0.61 1.3E-05 38.5 4.9 64 477-548 64-140 (186)
314 PRK12798 chemotaxis protein; R 90.2 18 0.00039 34.7 21.2 179 360-541 125-321 (421)
315 COG1747 Uncharacterized N-term 90.2 20 0.00043 35.2 21.4 190 346-542 65-286 (711)
316 KOG4570 Uncharacterized conser 90.2 2 4.2E-05 38.9 8.2 51 58-109 115-165 (418)
317 KOG1586 Protein required for f 90.1 12 0.00026 32.6 14.9 19 495-513 209-227 (288)
318 TIGR03504 FimV_Cterm FimV C-te 90.0 0.58 1.2E-05 28.5 3.5 28 519-546 3-30 (44)
319 PF13170 DUF4003: Protein of u 90.0 14 0.00031 34.3 14.1 63 59-122 78-149 (297)
320 PF14561 TPR_20: Tetratricopep 90.0 0.94 2E-05 33.0 5.3 45 501-545 8-52 (90)
321 PF10602 RPN7: 26S proteasome 90.0 2.8 6.1E-05 35.4 8.9 64 146-209 37-102 (177)
322 KOG2062 26S proteasome regulat 90.0 26 0.00056 36.2 33.8 42 49-90 65-106 (929)
323 PRK09687 putative lyase; Provi 89.8 16 0.00035 33.6 26.0 45 214-258 141-185 (280)
324 PF13374 TPR_10: Tetratricopep 89.3 0.9 2E-05 27.1 4.2 27 483-509 4-30 (42)
325 PF08631 SPO22: Meiosis protei 89.3 18 0.00039 33.4 22.8 21 522-542 253-273 (278)
326 KOG1464 COP9 signalosome, subu 89.0 16 0.00035 32.5 16.8 234 283-521 71-343 (440)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 88.9 6.2 0.00013 28.8 8.4 63 393-457 22-84 (103)
328 PF02284 COX5A: Cytochrome c o 88.9 2 4.4E-05 31.6 6.0 60 396-457 28-87 (108)
329 PF13170 DUF4003: Protein of u 88.7 20 0.00044 33.2 14.7 135 293-457 78-225 (297)
330 PF13431 TPR_17: Tetratricopep 88.6 0.56 1.2E-05 26.7 2.6 24 446-469 10-33 (34)
331 PF14853 Fis1_TPR_C: Fis1 C-te 88.5 1.3 2.9E-05 28.3 4.5 33 487-519 7-39 (53)
332 COG4785 NlpI Lipoprotein NlpI, 88.0 16 0.00036 31.4 13.7 107 142-254 96-206 (297)
333 PF00637 Clathrin: Region in C 87.9 0.6 1.3E-05 37.9 3.5 86 84-172 12-97 (143)
334 smart00028 TPR Tetratricopepti 87.8 1.1 2.5E-05 24.2 3.8 25 518-542 4-28 (34)
335 KOG4648 Uncharacterized conser 87.3 1.9 4.2E-05 39.4 6.3 87 385-482 104-199 (536)
336 PRK11619 lytic murein transgly 87.3 42 0.0009 35.3 38.9 439 53-535 43-496 (644)
337 KOG0545 Aryl-hydrocarbon recep 87.1 6.7 0.00015 34.3 9.1 58 488-545 237-294 (329)
338 COG4455 ImpE Protein of avirul 86.7 3 6.5E-05 35.7 6.7 61 454-514 6-68 (273)
339 COG5159 RPN6 26S proteasome re 86.6 14 0.0003 33.2 10.9 47 284-330 10-63 (421)
340 KOG0276 Vesicle coat complex C 86.4 11 0.00023 37.8 11.1 152 357-541 596-747 (794)
341 KOG0276 Vesicle coat complex C 86.2 6.3 0.00014 39.3 9.5 132 81-241 616-747 (794)
342 KOG2066 Vacuolar assembly/sort 86.1 47 0.001 34.7 21.7 143 216-378 393-536 (846)
343 KOG4234 TPR repeat-containing 85.4 12 0.00025 31.8 9.3 99 423-523 105-210 (271)
344 KOG4642 Chaperone-dependent E3 85.1 2.5 5.4E-05 36.7 5.6 83 423-508 20-105 (284)
345 KOG4507 Uncharacterized conser 84.8 3.3 7.1E-05 41.0 6.9 99 425-526 619-721 (886)
346 KOG1308 Hsp70-interacting prot 84.7 0.68 1.5E-05 42.3 2.3 91 461-551 126-218 (377)
347 smart00028 TPR Tetratricopepti 84.5 1.8 3.9E-05 23.4 3.5 30 483-512 3-32 (34)
348 COG2909 MalT ATP-dependent tra 84.5 61 0.0013 34.6 24.6 155 390-548 470-651 (894)
349 KOG4570 Uncharacterized conser 84.1 18 0.00039 33.1 10.6 99 109-209 59-164 (418)
350 PF13929 mRNA_stabil: mRNA sta 83.8 24 0.00052 32.1 11.3 122 46-170 134-263 (292)
351 PF10345 Cohesin_load: Cohesin 83.3 64 0.0014 33.9 31.4 93 45-139 61-164 (608)
352 PF02284 COX5A: Cytochrome c o 82.6 10 0.00022 28.1 7.0 48 476-523 40-87 (108)
353 COG4649 Uncharacterized protei 82.5 27 0.00058 29.0 15.7 120 389-509 69-195 (221)
354 PF07721 TPR_4: Tetratricopept 82.4 2.8 6E-05 22.0 3.2 21 453-473 5-25 (26)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 11 0.00023 27.7 6.9 63 58-122 22-84 (103)
356 PF09670 Cas_Cas02710: CRISPR- 82.0 26 0.00057 34.0 12.0 56 386-442 139-198 (379)
357 KOG1464 COP9 signalosome, subu 81.9 38 0.00082 30.3 16.0 181 289-469 39-251 (440)
358 PF11207 DUF2989: Protein of u 81.7 18 0.00039 30.9 9.3 79 155-235 117-198 (203)
359 PF06552 TOM20_plant: Plant sp 80.9 9.5 0.00021 31.8 7.2 60 430-492 52-124 (186)
360 smart00386 HAT HAT (Half-A-TPR 80.8 3.6 7.8E-05 22.6 3.7 30 495-524 1-30 (33)
361 KOG2396 HAT (Half-A-TPR) repea 80.7 62 0.0013 32.0 33.9 69 40-109 102-170 (568)
362 KOG2066 Vacuolar assembly/sort 80.2 82 0.0018 33.1 27.6 169 50-245 363-535 (846)
363 cd08819 CARD_MDA5_2 Caspase ac 79.9 15 0.00033 26.3 7.0 65 199-265 21-85 (88)
364 TIGR02508 type_III_yscG type I 79.6 22 0.00048 26.2 8.1 86 94-183 20-105 (115)
365 PF04190 DUF410: Protein of un 79.5 49 0.0011 30.1 16.0 158 127-306 3-170 (260)
366 PF04910 Tcf25: Transcriptiona 79.3 32 0.0007 33.1 11.5 65 377-441 99-167 (360)
367 KOG2396 HAT (Half-A-TPR) repea 79.1 70 0.0015 31.7 34.5 92 452-543 463-558 (568)
368 PF09986 DUF2225: Uncharacteri 78.9 17 0.00037 31.8 8.8 49 498-546 142-196 (214)
369 KOG2063 Vacuolar assembly/sort 77.9 80 0.0017 34.2 14.5 48 24-71 319-374 (877)
370 COG0790 FOG: TPR repeat, SEL1 77.7 60 0.0013 30.1 19.1 116 428-547 128-269 (292)
371 PF04910 Tcf25: Transcriptiona 77.6 70 0.0015 30.8 14.5 58 486-543 108-167 (360)
372 KOG3364 Membrane protein invol 77.3 13 0.00028 29.3 6.5 72 446-517 29-107 (149)
373 PF12862 Apc5: Anaphase-promot 77.1 8.6 0.00019 28.3 5.6 52 492-543 9-69 (94)
374 PF04097 Nic96: Nup93/Nic96; 76.5 1E+02 0.0023 32.3 23.5 21 459-479 515-535 (613)
375 cd08819 CARD_MDA5_2 Caspase ac 76.5 16 0.00035 26.2 6.3 65 98-164 21-85 (88)
376 KOG3364 Membrane protein invol 76.4 36 0.00078 26.9 8.6 47 497-543 51-99 (149)
377 KOG4077 Cytochrome c oxidase, 76.0 16 0.00035 28.2 6.6 59 396-456 67-125 (149)
378 PF14669 Asp_Glu_race_2: Putat 76.0 48 0.001 28.1 13.7 177 175-372 3-206 (233)
379 COG4976 Predicted methyltransf 75.7 5.7 0.00012 34.4 4.7 53 493-545 7-59 (287)
380 PF00244 14-3-3: 14-3-3 protei 74.8 42 0.00092 29.9 10.3 186 383-583 6-223 (236)
381 PRK13800 putative oxidoreducta 74.7 1.5E+02 0.0032 33.1 26.8 93 447-542 787-879 (897)
382 TIGR02508 type_III_yscG type I 74.6 32 0.0007 25.5 8.8 60 355-417 47-106 (115)
383 KOG1550 Extracellular protein 74.2 1.1E+02 0.0024 31.6 19.5 176 59-240 228-422 (552)
384 PF14853 Fis1_TPR_C: Fis1 C-te 73.2 7.9 0.00017 24.8 3.8 29 517-545 3-31 (53)
385 KOG4279 Serine/threonine prote 73.2 65 0.0014 33.6 11.8 183 280-514 204-399 (1226)
386 COG3947 Response regulator con 72.9 76 0.0016 29.0 11.5 58 381-439 282-339 (361)
387 COG4455 ImpE Protein of avirul 72.6 64 0.0014 28.1 11.5 127 380-514 3-138 (273)
388 COG2912 Uncharacterized conser 72.4 15 0.00033 33.0 6.7 59 486-544 186-244 (269)
389 PF07163 Pex26: Pex26 protein; 71.9 43 0.00094 30.3 9.2 83 354-436 90-181 (309)
390 TIGR03504 FimV_Cterm FimV C-te 71.5 10 0.00022 23.1 3.9 24 384-407 5-28 (44)
391 KOG0551 Hsp90 co-chaperone CNS 71.2 37 0.0008 31.5 8.8 93 450-542 82-180 (390)
392 COG5159 RPN6 26S proteasome re 70.6 84 0.0018 28.6 12.2 52 384-435 9-67 (421)
393 PRK10941 hypothetical protein; 70.6 22 0.00047 32.4 7.5 66 453-518 185-252 (269)
394 PF10579 Rapsyn_N: Rapsyn N-te 70.5 11 0.00023 26.5 4.2 47 425-471 18-65 (80)
395 PF14561 TPR_20: Tetratricopep 70.2 40 0.00086 24.6 7.5 53 480-532 21-75 (90)
396 PF04190 DUF410: Protein of un 69.6 89 0.0019 28.4 15.1 141 287-442 20-170 (260)
397 PF11846 DUF3366: Domain of un 69.3 21 0.00046 30.7 7.1 31 445-475 140-170 (193)
398 KOG0376 Serine-threonine phosp 68.5 3.9 8.4E-05 39.6 2.4 99 420-521 11-112 (476)
399 PF10345 Cohesin_load: Cohesin 68.5 1.6E+02 0.0035 31.0 39.1 192 40-241 27-251 (608)
400 PF04097 Nic96: Nup93/Nic96; 68.0 1.6E+02 0.0036 30.9 19.0 86 353-441 264-355 (613)
401 KOG0890 Protein kinase of the 67.7 2.9E+02 0.0063 33.7 29.8 62 449-510 1670-1731(2382)
402 COG5191 Uncharacterized conser 66.8 13 0.00029 33.8 5.2 80 444-523 102-184 (435)
403 PRK13800 putative oxidoreducta 66.4 2.2E+02 0.0047 31.7 26.6 125 310-441 754-880 (897)
404 PF13762 MNE1: Mitochondrial s 66.4 68 0.0015 25.9 9.2 76 351-426 43-128 (145)
405 PF10366 Vps39_1: Vacuolar sor 65.6 49 0.0011 25.2 7.5 30 515-544 39-68 (108)
406 PF13934 ELYS: Nuclear pore co 65.3 81 0.0018 28.0 9.9 125 404-537 70-198 (226)
407 PF14863 Alkyl_sulf_dimr: Alky 64.6 29 0.00063 27.9 6.3 62 466-530 58-119 (141)
408 PRK15180 Vi polysaccharide bio 63.9 1.6E+02 0.0034 29.1 29.2 89 461-549 710-810 (831)
409 TIGR02270 conserved hypothetic 63.9 1.5E+02 0.0033 29.1 23.6 119 134-261 89-207 (410)
410 PF07163 Pex26: Pex26 protein; 63.1 84 0.0018 28.6 9.2 87 284-370 90-181 (309)
411 COG0735 Fur Fe2+/Zn2+ uptake r 62.4 46 0.00099 27.0 7.2 63 167-230 8-70 (145)
412 KOG3807 Predicted membrane pro 62.3 1.3E+02 0.0029 27.9 12.6 19 499-517 380-398 (556)
413 PHA02875 ankyrin repeat protei 62.3 1.7E+02 0.0036 28.9 12.9 13 25-37 12-24 (413)
414 PF10366 Vps39_1: Vacuolar sor 62.0 56 0.0012 24.9 7.2 26 280-305 42-67 (108)
415 PRK13184 pknD serine/threonine 61.7 2.6E+02 0.0057 31.0 23.0 354 153-540 483-896 (932)
416 COG4976 Predicted methyltransf 61.7 14 0.0003 32.1 4.2 56 459-514 5-62 (287)
417 KOG4507 Uncharacterized conser 61.7 18 0.00038 36.2 5.4 87 460-546 618-707 (886)
418 KOG1114 Tripeptidyl peptidase 61.0 2.5E+02 0.0054 30.6 13.6 69 397-465 1215-1283(1304)
419 PF07720 TPR_3: Tetratricopept 60.0 32 0.00069 19.9 4.5 19 519-537 5-23 (36)
420 PF09477 Type_III_YscG: Bacter 58.8 77 0.0017 23.9 8.2 76 453-547 26-101 (116)
421 PF11846 DUF3366: Domain of un 58.4 34 0.00075 29.4 6.4 54 55-108 120-173 (193)
422 TIGR02270 conserved hypothetic 58.4 1.9E+02 0.0042 28.4 23.1 182 49-249 44-226 (410)
423 KOG4077 Cytochrome c oxidase, 57.9 61 0.0013 25.3 6.5 47 476-522 79-125 (149)
424 KOG3824 Huntingtin interacting 57.5 40 0.00086 30.8 6.4 61 460-520 127-189 (472)
425 PF10579 Rapsyn_N: Rapsyn N-te 57.1 31 0.00068 24.2 4.5 45 493-537 18-65 (80)
426 KOG0403 Neoplastic transformat 57.1 2E+02 0.0043 28.2 18.6 356 83-463 218-616 (645)
427 KOG4642 Chaperone-dependent E3 56.6 1.5E+02 0.0031 26.5 9.5 117 357-475 20-143 (284)
428 PF12862 Apc5: Anaphase-promot 55.9 47 0.001 24.4 5.8 27 485-511 45-71 (94)
429 PHA02537 M terminase endonucle 54.0 1.6E+02 0.0034 26.1 9.7 22 388-409 93-114 (230)
430 KOG4567 GTPase-activating prot 53.9 1.4E+02 0.0031 27.6 9.1 41 100-140 264-304 (370)
431 PF04781 DUF627: Protein of un 53.6 99 0.0021 23.6 7.3 42 499-540 62-103 (111)
432 PF12069 DUF3549: Protein of u 53.5 2E+02 0.0044 27.2 12.3 132 352-487 171-304 (340)
433 cd00280 TRFH Telomeric Repeat 53.0 94 0.002 26.2 7.4 22 459-480 121-142 (200)
434 cd08326 CARD_CASP9 Caspase act 52.4 35 0.00076 24.5 4.4 32 229-260 44-75 (84)
435 KOG2063 Vacuolar assembly/sort 52.4 3.5E+02 0.0076 29.6 25.7 27 280-306 507-533 (877)
436 PF11848 DUF3368: Domain of un 52.1 49 0.0011 20.6 4.5 35 88-122 11-45 (48)
437 KOG2581 26S proteasome regulat 51.6 2.4E+02 0.0051 27.4 11.1 23 518-541 321-343 (493)
438 PF10255 Paf67: RNA polymerase 51.6 32 0.0007 33.3 5.3 57 452-508 125-191 (404)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 51.2 1.1E+02 0.0023 24.1 7.5 42 499-540 81-124 (126)
440 PHA02875 ankyrin repeat protei 49.8 2.7E+02 0.0058 27.5 19.0 79 53-140 9-91 (413)
441 PF11838 ERAP1_C: ERAP1-like C 49.3 2.3E+02 0.005 26.6 16.5 82 429-510 146-230 (324)
442 PRK10564 maltose regulon perip 48.6 27 0.00059 31.9 4.1 36 148-183 260-295 (303)
443 PF02184 HAT: HAT (Half-A-TPR) 47.8 48 0.001 18.6 3.4 27 496-523 2-28 (32)
444 cd00280 TRFH Telomeric Repeat 46.5 1.8E+02 0.004 24.6 10.3 45 486-531 116-160 (200)
445 PF11663 Toxin_YhaV: Toxin wit 46.2 29 0.00064 27.3 3.4 33 156-190 106-138 (140)
446 PF12968 DUF3856: Domain of Un 46.1 1.4E+02 0.003 23.2 8.0 58 484-541 58-126 (144)
447 PF08424 NRDE-2: NRDE-2, neces 45.9 2.7E+02 0.0058 26.4 15.0 114 395-511 48-184 (321)
448 KOG0376 Serine-threonine phosp 45.9 27 0.00058 34.1 3.8 89 456-544 11-101 (476)
449 PF10516 SHNi-TPR: SHNi-TPR; 45.7 55 0.0012 19.2 3.7 28 516-543 2-29 (38)
450 PF14689 SPOB_a: Sensor_kinase 45.4 42 0.00091 22.4 3.7 26 518-543 26-51 (62)
451 PRK13342 recombination factor 44.7 3.2E+02 0.007 27.0 15.3 113 294-424 154-276 (413)
452 COG2909 MalT ATP-dependent tra 42.8 4.8E+02 0.01 28.4 30.4 17 94-110 296-312 (894)
453 PF11848 DUF3368: Domain of un 42.7 83 0.0018 19.6 5.2 33 389-421 13-45 (48)
454 PF06957 COPI_C: Coatomer (COP 42.5 94 0.002 30.4 6.9 50 481-544 300-349 (422)
455 PF13762 MNE1: Mitochondrial s 42.2 1.9E+02 0.004 23.5 10.7 50 144-193 78-128 (145)
456 PRK10564 maltose regulon perip 42.0 49 0.0011 30.4 4.7 44 75-118 252-296 (303)
457 KOG3824 Huntingtin interacting 42.0 44 0.00095 30.6 4.3 55 423-479 126-181 (472)
458 KOG0545 Aryl-hydrocarbon recep 42.0 1.5E+02 0.0033 26.4 7.3 62 452-513 233-296 (329)
459 PHA03100 ankyrin repeat protei 41.7 3.8E+02 0.0083 27.0 12.3 227 1-240 54-305 (480)
460 KOG1308 Hsp70-interacting prot 41.5 33 0.00071 32.0 3.5 89 24-115 126-218 (377)
461 PF12796 Ank_2: Ankyrin repeat 41.4 1.2E+02 0.0026 21.5 6.2 13 126-138 35-47 (89)
462 KOG4567 GTPase-activating prot 41.4 2.6E+02 0.0057 26.0 8.9 76 297-377 263-348 (370)
463 KOG1498 26S proteasome regulat 40.9 3.4E+02 0.0074 26.2 16.4 128 453-583 135-277 (439)
464 KOG0292 Vesicle coat complex C 40.5 2.3E+02 0.0049 30.6 9.4 54 412-475 671-724 (1202)
465 COG0735 Fur Fe2+/Zn2+ uptake r 40.2 1.2E+02 0.0026 24.6 6.3 46 149-194 24-69 (145)
466 PF09797 NatB_MDM20: N-acetylt 40.2 97 0.0021 30.0 6.9 59 483-541 182-243 (365)
467 KOG0292 Vesicle coat complex C 40.0 62 0.0013 34.4 5.5 44 461-507 655-698 (1202)
468 KOG0686 COP9 signalosome, subu 39.9 1.7E+02 0.0038 28.2 7.9 87 450-538 151-252 (466)
469 PF11817 Foie-gras_1: Foie gra 39.8 97 0.0021 27.9 6.4 22 419-440 184-205 (247)
470 PRK09462 fur ferric uptake reg 39.6 1.8E+02 0.0039 23.6 7.4 61 170-231 7-68 (148)
471 PF14689 SPOB_a: Sensor_kinase 39.3 42 0.00092 22.3 3.0 25 83-107 27-51 (62)
472 KOG2422 Uncharacterized conser 39.0 4.5E+02 0.0097 27.0 13.2 138 93-230 252-431 (665)
473 KOG4279 Serine/threonine prote 38.7 5.1E+02 0.011 27.6 11.8 91 148-241 204-313 (1226)
474 PF09670 Cas_Cas02710: CRISPR- 38.6 3.9E+02 0.0083 26.1 11.1 57 50-108 138-198 (379)
475 cd08326 CARD_CASP9 Caspase act 38.4 1.5E+02 0.0032 21.3 6.0 34 259-292 43-76 (84)
476 COG5191 Uncharacterized conser 38.3 73 0.0016 29.3 5.1 70 479-548 105-175 (435)
477 PF11817 Foie-gras_1: Foie gra 37.6 1.2E+02 0.0026 27.3 6.7 23 453-475 182-204 (247)
478 PF11768 DUF3312: Protein of u 37.1 3.8E+02 0.0082 27.3 10.1 24 351-374 412-435 (545)
479 cd08332 CARD_CASP2 Caspase act 37.0 1E+02 0.0022 22.5 4.9 27 230-256 49-75 (90)
480 PRK11639 zinc uptake transcrip 37.0 2.1E+02 0.0045 24.0 7.5 60 171-231 17-76 (169)
481 PRK11639 zinc uptake transcrip 36.3 1.4E+02 0.0031 24.9 6.4 49 148-196 28-76 (169)
482 KOG1498 26S proteasome regulat 36.3 4.1E+02 0.0088 25.7 14.2 24 351-374 135-158 (439)
483 PF08424 NRDE-2: NRDE-2, neces 35.3 3.9E+02 0.0085 25.3 15.0 116 429-546 47-185 (321)
484 PRK09462 fur ferric uptake reg 35.1 2.5E+02 0.0053 22.8 7.6 60 302-362 7-67 (148)
485 PF09986 DUF2225: Uncharacteri 34.4 3.2E+02 0.007 24.0 10.1 22 454-475 170-191 (214)
486 PF12926 MOZART2: Mitotic-spin 34.2 1.8E+02 0.0039 21.0 6.9 41 201-241 29-69 (88)
487 PF10255 Paf67: RNA polymerase 34.0 4.6E+02 0.0099 25.8 10.0 54 251-304 127-191 (404)
488 PF11663 Toxin_YhaV: Toxin wit 33.6 54 0.0012 25.9 3.1 31 288-320 106-136 (140)
489 PF04762 IKI3: IKI3 family; I 33.5 7.3E+02 0.016 27.9 13.6 182 119-303 699-927 (928)
490 KOG4521 Nuclear pore complex, 33.2 7.7E+02 0.017 28.0 14.6 17 357-373 930-946 (1480)
491 PF07064 RIC1: RIC1; InterPro 32.8 3.8E+02 0.0083 24.4 15.0 27 45-71 84-110 (258)
492 PF14669 Asp_Glu_race_2: Putat 32.7 3.2E+02 0.0069 23.4 13.0 56 185-240 137-206 (233)
493 KOG1839 Uncharacterized protei 32.5 2.4E+02 0.0052 31.9 8.7 122 421-543 940-1085(1236)
494 KOG4814 Uncharacterized conser 32.4 1.6E+02 0.0035 30.3 6.8 59 486-544 399-457 (872)
495 COG2178 Predicted RNA-binding 32.0 3.3E+02 0.0071 23.4 8.2 18 357-374 39-56 (204)
496 COG4941 Predicted RNA polymera 31.6 4.5E+02 0.0099 24.9 11.4 117 394-515 272-399 (415)
497 KOG0991 Replication factor C, 31.2 3.8E+02 0.0083 23.9 9.9 133 36-178 123-271 (333)
498 COG4259 Uncharacterized protei 31.0 1.9E+02 0.0042 21.5 5.3 30 512-541 69-98 (121)
499 PRK14956 DNA polymerase III su 31.0 5.8E+02 0.012 25.9 10.5 86 108-215 196-283 (484)
500 COG0790 FOG: TPR repeat, SEL1 30.4 4.4E+02 0.0095 24.3 17.2 110 363-476 93-218 (292)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-85 Score=699.09 Aligned_cols=581 Identities=37% Similarity=0.700 Sum_probs=552.7
Q ss_pred ccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH
Q 007818 3 ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82 (588)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 82 (588)
+.|..|+..++|.|+.+|+ +.|+++.|+++|++|++||..+||.+|.+|++.|++++|+++|++|.. .|+.||..||
T Consensus 114 ~~~~~~~~~~~n~li~~~~--~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~ 190 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFV--RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTF 190 (857)
T ss_pred HcCCCCCchHHHHHHHHHH--hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHH
Confidence 3577788899999999999 999999999999999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (588)
+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|..+|..+||++|.+|++.|+++
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
+|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHh----------------------------------------------------------------
Q 007818 243 NKTVVSCTTMIVGYAK---------------------------------------------------------------- 258 (588)
Q Consensus 243 ~~~~~~~~~ll~~~~~---------------------------------------------------------------- 258 (588)
.+|..+|+.++.+|++
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 8887777777777444
Q ss_pred ------cCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHH
Q 007818 259 ------FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332 (588)
Q Consensus 259 ------~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 332 (588)
.|++++|.++|++|.+++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 45555555555556666677788888888888888888888888875 58999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 412 (588)
+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|++++.+|+++|+.++|+++|++|.+.|+.||
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 492 (588)
..||+.++.+|.+.|.+++|.++|+.|.+.+++.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+|..++.+|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999996669999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCc
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
.+|+.+.++.+.+++++++|+++..|..|+++|...|+|++|.++.+.|.+.|+.++|+++|+++++.++.|..||..||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhC
Q 007818 573 ELEQIYDCLVQLTRHF 588 (588)
Q Consensus 573 ~~~~~~~~~~~~~~~~ 588 (588)
...+||++|+.+.++|
T Consensus 749 ~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 749 QIKEINTVLEGFYEKM 764 (857)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999999988764
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.9e-76 Score=610.64 Aligned_cols=518 Identities=36% Similarity=0.607 Sum_probs=498.2
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (588)
.++..+|+.+|.++.+.|++++|+++|++|....+..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34566899999999999999999999999987455889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 120 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
++.+|++.|+++.|.++|++|..||..+||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 279 (588)
.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|+.|.++|. .+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~-------------------------------vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT-------------------------------VA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCCh-------------------------------hH
Confidence 99999999999999999999999999999999999888888765554 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
||.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 66666777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHh
Q 007818 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (588)
.|++++|.++|++|.++|..+||+|+.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
.+.+++.|+..+|+.++++|.+.|++++|.+++++++.+|+..+|+.++.+|..+|+++.|..+++++++..|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHhhC
Q 007818 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588 (588)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (588)
.|+.+|.+.|++++|.++++.|.+.|+.+.++++|+++.+.++.|+.||..||...++++.|..+..+|
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-68 Score=567.80 Aligned_cols=541 Identities=24% Similarity=0.345 Sum_probs=507.2
Q ss_pred cccccCcCCchhhHHHHhhcccCCCChhhHHhhcccC----CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 007818 2 TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNV----QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP 77 (588)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 77 (588)
.+.|++|+..+|+.++..|. +.+.++.+..++..+ ..++...+|+++..|++.|+.+.|.++|++|.+ |
T Consensus 78 ~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~ 150 (857)
T PLN03077 78 QELRVPVDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE-----R 150 (857)
T ss_pred HhcCCCCChhHHHHHHHHHh--hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC-----C
Confidence 44688899999999999888 788888888888754 367888899999999999999999999999964 8
Q ss_pred CcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc----CCCCCcccHHHHHH
Q 007818 78 DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE----SCVRNLVSWNSLIN 153 (588)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~l~~ 153 (588)
|..+|+.++.+|++.|++++|..+|++|...|+.||..+|+.++.+|+..+++..+.+++.. ...+|..+||.|+.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988876 45689999999999
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|+.++|.++|.+|.+.|+.||..+|+.++.+|.+.|+.+.
T Consensus 231 ~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 9999999999999999996 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007818 234 AEEIFDSMVN----KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309 (588)
Q Consensus 234 A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 309 (588)
|.+++..+.+ +|..+|+.++.+|++.|++++|.++|++|..++..+|+.++.+|++.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 9999999854 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 389 (588)
||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++++.+|++.|++++|.++|++|.++|..+|+.++.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
+.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+. |+.++..+++.|+++|.++|+.++|.
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHH
Confidence 99999999999999986 58999999999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC-CCCCchHHHHHHHHHccCChHHHHHHHHHHH-hcCCc
Q 007818 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD-PQDSGIYVLLANMYRDSNMWEEAGKVRKMME-ERGVE 547 (588)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 547 (588)
++|+++ .||..+|+.++.+|.++|+.++|.++|+++.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 999998 7899999999999999999999999999998754 2278889999999999999999999999998 67888
Q ss_pred cCCceeEEEE
Q 007818 548 KTPGCSSIEV 557 (588)
Q Consensus 548 ~~~~~~~~~~ 557 (588)
|+...+...+
T Consensus 623 P~~~~y~~lv 632 (857)
T PLN03077 623 PNLKHYACVV 632 (857)
T ss_pred CchHHHHHHH
Confidence 8776655433
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-65 Score=528.85 Aligned_cols=521 Identities=19% Similarity=0.224 Sum_probs=361.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG-TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
.++...|..++..+++.|++++|+++|++|.. .| +.++..+++.++.+|.+.|.++.|..+++.|.. |+..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 33444555555555555555555555555555 33 234444455555555555555555555555532 5555555
Q ss_pred HHHHHHHhCCChhHHHHHhccC----CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 119 AVIHVFVSCGDLGLACNVFDES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
.++.+|++.|+++.|.++|++| ..||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 5555555555555555555543 234555555555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC------CCCcchHHHHHHHHHhcCCHHHHHHH
Q 007818 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV------NKTVVSCTTMIVGYAKFGFLDIARKI 268 (588)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~ 268 (588)
++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555555555555555555555555555555552 23555555555555555555555555
Q ss_pred hhhCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC
Q 007818 269 FDDLPE----KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344 (588)
Q Consensus 269 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (588)
|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 555544 3445688888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcchHHHHHHHHhHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMP----ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.|+.+|++.|++++|.++|++|...|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888888888888888888888888884 5788888888888888888888888888888888888888888888
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH----hc-------------------CChHHHHHHHHhCC-
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG----RS-------------------GLLEEAEQLIRSMP- 476 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~- 476 (588)
.+|++.|++++|.++++.|.+. |+.|+..+|+.++..+. ++ +..++|..+|++|.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 8888888888888888888887 88888888888876532 11 23467999999983
Q ss_pred --CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCcee
Q 007818 477 --MAADVVVWGALFFACRLHGNVSIGERAAMKLLE-LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553 (588)
Q Consensus 477 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 553 (588)
..||..+|..++.++...+....+..+++.+.. -.+.+..+|..|+..+.+. .++|..++++|.+.|+.|+....
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccc
Confidence 679999999999777788888888888877642 3355778999999987332 36899999999999999987632
Q ss_pred EEEECCEEEEEecCC
Q 007818 554 SIEVNGLLYEFIVRD 568 (588)
Q Consensus 554 ~~~~~~~~~~~~~~~ 568 (588)
.....-.++++.+|.
T Consensus 919 ~~~~~~d~~~~~~~a 933 (1060)
T PLN03218 919 KSPIVIDAEELPVFA 933 (1060)
T ss_pred cCceEEEcccCcchh
Confidence 212222334444444
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-61 Score=504.19 Aligned_cols=495 Identities=18% Similarity=0.212 Sum_probs=460.3
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-----NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 81 (588)
.++...|..++..+. +.|++++|+++|++|+ +++...++.++.+|.+.|..++|..+|+.|.. ||..+
T Consensus 367 ~~~~~~~~~~y~~l~--r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~T 439 (1060)
T PLN03218 367 KRKSPEYIDAYNRLL--RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLST 439 (1060)
T ss_pred CCCchHHHHHHHHHH--HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHH
Confidence 466778999999998 8999999999999987 34566778889999999999999999999854 99999
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC----CCCcccHHHHHHHHHh
Q 007818 82 YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC----VRNLVSWNSLINGFVR 157 (588)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 157 (588)
|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 6899999999999999
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCChhhHHHHHHHHHhcCChhHHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE--SGLTLTVPLANALMDMYVKCGKLESAE 235 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 235 (588)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred HHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007818 236 EIFDSMVN----KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE----KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307 (588)
Q Consensus 236 ~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 307 (588)
++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|+.++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999965 4668999999999999999999999999976 466679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC----CCCcchHHH
Q 007818 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP----ERNSLTYTA 383 (588)
Q Consensus 308 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 383 (588)
+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 489999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----C-------------------CchHHHHHHHHHhh
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH----G-------------------GLVDEGRKYFAQMS 440 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~ 440 (588)
++.+|++.|+.++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876532 1 12367999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
+. |+.||..+|+.++.++...+....+..+++.+. ..|+..+|+.++.++.+. .++|..+++++.+.+
T Consensus 840 ~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 840 SA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 98 999999999999999989999999999999885 446788999999988432 468999999998765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-58 Score=481.66 Aligned_cols=409 Identities=25% Similarity=0.444 Sum_probs=302.8
Q ss_pred ccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH
Q 007818 3 ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82 (588)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 82 (588)
+.|+.||..+||.|+.+|+ +.|+++.|+++|++|+.||..+||+++.+|++.|++++|+++|++|.+ .|+.|+..+|
T Consensus 151 ~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~ 227 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTF 227 (697)
T ss_pred HhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhH
Confidence 3456666666666666666 566666666666666666666666666666666666666666666655 5566666666
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (588)
+.++.+|+..|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+++.++|..+||+++.+|++.|+++
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
+|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.|+++|+++|++++|.++|++|
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m- 386 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM- 386 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-
Confidence 6666666666666666666666666666666666666666666666666666666666666665555555555555554
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007818 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322 (588)
Q Consensus 243 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 322 (588)
.++|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 387 ------------------------------~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 387 ------------------------------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ------------------------------CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45566677778888889999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHH-hCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 007818 323 SQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISY 400 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (588)
.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|++|+.+|..+|+.+.|..+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999976 6999999999999999999999999999999997 68999999999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC
Q 007818 401 FSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448 (588)
Q Consensus 401 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (588)
++++.+. .|+ ..+|..++..|++.|++++|.++++.|.+. |+...
T Consensus 517 ~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 517 AEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 9999764 554 569999999999999999999999999988 77543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-33 Score=309.65 Aligned_cols=525 Identities=13% Similarity=0.040 Sum_probs=374.5
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-CcccH
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTY 82 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 82 (588)
|.+...+..+...+. +.|++++|...++.+. +.+...+..+...+.+.|++++|.+.|+++.+ ..| +...+
T Consensus 326 p~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ 400 (899)
T TIGR02917 326 PNSHQARRLLASIQL--RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE---LDPENAAAR 400 (899)
T ss_pred CCChHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHH
Confidence 455666667777777 8888888888887654 45666788888888888888888888888876 334 34456
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCC
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSLINGFVRSG 159 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 159 (588)
..+...+...|++++|...++.+.+... ........++..+.+.|++++|..+++++. +++...|..+...+...|
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Confidence 6667777788888888888888877552 233455566677778888888888777642 345667777778888888
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 007818 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239 (588)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 239 (588)
++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... .+..++..+...+.+.|++++|...++
T Consensus 480 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 480 DLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred CHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777643 33444566677777778888888888887777643 356677777777777888888888877
Q ss_pred hcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 240 SMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313 (588)
Q Consensus 240 ~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 313 (588)
++.+. +...+..+...+.+.|++++|...++.+.. .+...|..+..++...|++++|...|+.+.+.. +.+..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 636 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSAL 636 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 76432 344566677777778888888877777654 233447777777777888888888887777653 33455
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 390 (588)
.+..+..++...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH
Confidence 66677777777788888888777776653 23456667777777777788877777777653 345566667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHH
Q 007818 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (588)
.|++++|...|+.+... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..++..|...|++++|.+
T Consensus 716 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred CCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 77777777777777765 34446666677777777777777777777776 345566777777777777777777777
Q ss_pred HHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 471 LIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 471 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.|+++. .+++...+..+...+...|+ ++|+..++++++..|+++..+..++.++.+.|++++|.++++++.+.+.
T Consensus 792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777763 22356667777777777777 6677777777777777777777777777777777777777777776654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.7e-33 Score=303.86 Aligned_cols=520 Identities=13% Similarity=0.067 Sum_probs=285.2
Q ss_pred CCchhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHH
Q 007818 9 HGFAPSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPL 84 (588)
Q Consensus 9 ~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 84 (588)
+..+++.+...|. +.|++++|...|+++. +.+...+..+...+...|++++|++.|+.+.+ ..|+ ......
T Consensus 362 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~ 436 (899)
T TIGR02917 362 DPAALSLLGEAYL--ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ---LDPELGRADLL 436 (899)
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh---hCCcchhhHHH
Confidence 3444555555555 5566666666665432 33444555555556666666666666665554 1222 223334
Q ss_pred HHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCCh
Q 007818 85 LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFP 161 (588)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 161 (588)
++..+.+.|++++|..+++.+... .+++..++..+..++...|++++|.+.|++. .+.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 445555566666666666665553 2344555555566666666666666666542 223344455555555666666
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 162 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
++|.+.|+++...+ +.+..++..+...+...|+.++|...++.+.+.+. .+...+..++..+...|++++|..+++.+
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666655442 23444555555555556666666666665555432 23444555556666666666666666555
Q ss_pred CC---CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 242 VN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 242 ~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
.+ .++..|..+..++...|++++|...|+.+.. .++..+..+...+...|++++|...++.+.+.. +.+..++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 32 2344555556666666666666666655432 223335555555666666666666666655532 2334555
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGK 393 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 393 (588)
..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++...|+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCC
Confidence 555555666666666666666555543 22444455555556666666666666655542 333445555555666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+++|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++.+ ..++++..+..++..+...|+ .+|+++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 666666666655542 33444555555556666666666666666655 223445555556666666666 55666655
Q ss_pred hC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 474 SM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 474 ~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
++ ...| +...+..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++++
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 54 2222 333444555555556666666666666666666666666666666666666666666665553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.6e-25 Score=240.04 Aligned_cols=522 Identities=12% Similarity=0.012 Sum_probs=354.5
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC--CC-ChhhH----------------HHHHHHHHhCCChHHHHHHHH
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ--NP-NSFSW----------------NVAIRGFLETGKMREAVDLYK 67 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~----------------~~l~~~~~~~~~~~~a~~~~~ 67 (588)
|.|+.++..+...+. +.|+.++|.+.+++.. .| +...+ ..+.+.+...|++++|++.|+
T Consensus 59 p~~p~~~~~~~~~~l--~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLL--RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 446666777777777 8888888888887764 22 32222 223446777888888888888
Q ss_pred HHHhcCCCCCCccc-HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCc-
Q 007818 68 QMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL- 145 (588)
Q Consensus 68 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 145 (588)
.+.+ . .+|+... ...........|+.++|...++++.+.. |.+...+..+...+...|+.++|+..++++.....
T Consensus 137 ~~l~-~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 137 KLFN-G-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHcc-C-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 8876 2 2233221 1111112224577888888888888764 34566677777778888888888877765321000
Q ss_pred ----------------------ccHH----------------------------------HHHHHHHhCCChhHHHHHHH
Q 007818 146 ----------------------VSWN----------------------------------SLINGFVRSGFPREAIRLFR 169 (588)
Q Consensus 146 ----------------------~~~~----------------------------------~l~~~~~~~~~~~~a~~~~~ 169 (588)
..+. .....+...|++++|+..|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0000 11233456678888888888
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh-hhH------------HHHHHHHHhcCChhHHHH
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV-PLA------------NALMDMYVKCGKLESAEE 236 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~g~~~~A~~ 236 (588)
+..+.. +.+...+..+...+.+.|+.++|...++...+....... ..+ ......+.+.|++++|..
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777652 335566777777777888888888888877765432211 111 122345667777777777
Q ss_pred HHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc---cHH-----------------------------
Q 007818 237 IFDSMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV---PWN----------------------------- 281 (588)
Q Consensus 237 ~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~----------------------------- 281 (588)
.|+++.+. +...+..+...+...|++++|++.|+++.+.++. .+.
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 77777543 3345556667777777777777777776542222 121
Q ss_pred -------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcch
Q 007818 282 -------------AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348 (588)
Q Consensus 282 -------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (588)
.+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|...++.+.+... .+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Confidence 22334456778888888888877753 22445566777778888888888888888776542 2334
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCCC----c---------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPERN----S---------LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 415 (588)
.+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+++. .+++...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 44444555667788888888888775321 0 1123445677888999999988872 2455667
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 493 (588)
+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.++.+. ..| +...+..+..++..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 778888999999999999999999973 45568889999999999999999999999874 344 45567777888889
Q ss_pred hCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 494 HGNVSIGERAAMKLLELDPQDSG------IYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.|++++|.+.++++++..|+++. .+..++.++...|++++|++.+++...
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998876543 566779999999999999999999964
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.2e-25 Score=242.45 Aligned_cols=517 Identities=10% Similarity=0.000 Sum_probs=297.6
Q ss_pred HHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH----------
Q 007818 16 LIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY---------- 82 (588)
Q Consensus 16 ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 82 (588)
.++.+. ..++.+.|++.++++. +.|+..+..++..+.+.|+.++|.+.++++.+ ..|+...+
T Consensus 34 q~~~~~--~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~---~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 34 QVRLGE--ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ---LAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHH--hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHhc
Confidence 344666 7899999999998753 66888999999999999999999999999988 45655433
Q ss_pred -------HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhH-HHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHH
Q 007818 83 -------PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV-HNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSL 151 (588)
Q Consensus 83 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 151 (588)
......+.+.|++++|...++.+.+.+ +|+... ...........|+.++|++.|+++. +.+...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 223346778999999999999999854 344322 1112222234699999999999854 3466678888
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCC----------------CCCcc---hHH----------------------------
Q 007818 152 INGFVRSGFPREAIRLFRDMQLERV----------------EPDEV---TMI---------------------------- 184 (588)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~m~~~~~----------------~p~~~---~~~---------------------------- 184 (588)
...+...|++++|++.++++..... .++.. .+.
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998854310 00000 000
Q ss_pred ------HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcc-----hHH---
Q 007818 185 ------GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV-----SCT--- 250 (588)
Q Consensus 185 ------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~--- 250 (588)
.....+...|++++|...++..++... .+...+..+..++.+.|++++|+..|++..+.++. .|.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 011223445566666666666655432 24555566666666666666666666655432111 111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHhhhCCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 251 ---------TMIVGYAKFGFLDIARKIFDDLPEKY---VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318 (588)
Q Consensus 251 ---------~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 318 (588)
.....+.+.|++++|+..|+++...+ ...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 11223445666666666666554322 2234455566666666666666666665532 1223333344
Q ss_pred HHHHcccCChhHHHHHHHHHHHhCCC--------CcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHHHHH
Q 007818 319 LSACSQLGALDDGIWIHRFIEKENFN--------LNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAIIGG 387 (588)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 387 (588)
...+. .++.++|..+++.+...... .....+..+...+...|++++|.+.|++..+ | ++..+..+...
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44432 34456665555443221100 0012233455566677777777777777653 2 34456667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC-----------------------
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR----------------------- 444 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 444 (588)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+... .
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHH
Confidence 777888888888888777642 223334444444556677778887777765321 1
Q ss_pred ----------------CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 445 ----------------LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 445 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
.+++...+..+...+.+.|++++|++.|+++. ..| +...+..++..+...|++++|+..+++
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11222233334444444444444444444431 222 233444444444444555555555555
Q ss_pred HhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+++..|+++..+..++.++...|++++|.++++++..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5444444444444455555555555555555555443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.1e-23 Score=217.71 Aligned_cols=512 Identities=10% Similarity=0.000 Sum_probs=359.4
Q ss_pred hhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 007818 12 APSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88 (588)
Q Consensus 12 ~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (588)
++..++.++.....|++++|...|+... |.+..++..+.+.|...|+.++|+..+++..+ ..|+...|..++..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~---ldP~n~~~~~~La~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK---RHPGDARLERSLAA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHHHH
Confidence 4445555444335699999999998754 66678899999999999999999999999988 56766655555533
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHH--------HHhCCChhHHHHHhccCCCCC--cccHHH-HHHHHHh
Q 007818 89 CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV--------FVSCGDLGLACNVFDESCVRN--LVSWNS-LINGFVR 157 (588)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~-l~~~~~~ 157 (588)
+ ++.++|..+++++.+.. |-+..++..+... |.+.++...+++ .+...|+ ...... +...|.+
T Consensus 121 i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHH
Confidence 3 88899999999999976 3445566666665 777777777777 3333343 333344 4889999
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ-LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 236 (588)
.|++++|++++.++.+.+ +.+..-...+...|.. .++ +.+..++.. .+..++.....+++.|.+.|+.++|.+
T Consensus 195 l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred HhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999885 3344445566667776 366 777777442 334588889999999999999999999
Q ss_pred HHHhcCCC-----CcchHHH------------------------------HHHHH-------------------------
Q 007818 237 IFDSMVNK-----TVVSCTT------------------------------MIVGY------------------------- 256 (588)
Q Consensus 237 ~~~~~~~~-----~~~~~~~------------------------------ll~~~------------------------- 256 (588)
+++++... +..+|-- ++..+
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 348 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEER 348 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHH
Confidence 99988431 1111110 12222
Q ss_pred --------------------------------------HhcCCHHHHHHHhhhCCCC--Ccc----cHHHHHHHHHhcCC
Q 007818 257 --------------------------------------AKFGFLDIARKIFDDLPEK--YVV----PWNAIIGGYVQAKR 292 (588)
Q Consensus 257 --------------------------------------~~~~~~~~a~~~~~~~~~~--~~~----~~~~l~~~~~~~~~ 292 (588)
.+.|+.++|..+|+..... +.. ...-++..|.+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2344455555555544331 110 12234444444433
Q ss_pred ---hHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 293 ---SKEALAL----------------------FHEMQAT-GI-KP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 293 ---~~~a~~~----------------------~~~~~~~-~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
..++..+ +...... +. ++ +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 2222211 1111110 11 12 34444444444444 67777888776666553
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 421 (588)
|+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+.. +++...+..+..
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4444333445555689999999999987653 444556677788889999999999999998864 333334444444
Q ss_pred HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHH
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 499 (588)
.....|++++|...+++..+. .|+...+..+..++.+.|++++|.+.+++. ...| +...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 555679999999999999864 467888999999999999999999999987 3556 46677778788999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+..++++++..|+++.++..++.++...|++++|+..++++.+..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.5e-21 Score=199.21 Aligned_cols=523 Identities=8% Similarity=0.004 Sum_probs=357.3
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc-cH-
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TY- 82 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~- 82 (588)
|-+..++..|..+|. +.|++++|+..+++.. .|+...|..++..+ +++.+|.++|+++.. ..|+.. .+
T Consensus 75 P~n~~~~~~LA~~yl--~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~---~~P~n~~~~~ 146 (987)
T PRK09782 75 PDNIPLTLYLAEAYR--HFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLA---QQKACDAVPT 146 (987)
T ss_pred CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHH---hCCCChhHHH
Confidence 455677788888888 8999999999988754 33333333333222 777777788877776 223321 22
Q ss_pred --------------------------------------HHH-HHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 007818 83 --------------------------------------PLL-FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123 (588)
Q Consensus 83 --------------------------------------~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (588)
... .+.|.+.+++++|..++..+.+.+. .+......|-.+
T Consensus 147 ~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~a 225 (987)
T PRK09782 147 LRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDV 225 (987)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 111 3444455566666666666666542 333334444445
Q ss_pred HHh-CCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCC-CCcchHHHH---------------
Q 007818 124 FVS-CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGM--------------- 186 (588)
Q Consensus 124 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l--------------- 186 (588)
|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|.++++++...-.. |...++..+
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 555 244 55555555433456777788888899999999999998887654222 332222211
Q ss_pred ---------------HHHHhccCChhHHHHHHH-----------------------------HHHHhCCCCChhhHHHHH
Q 007818 187 ---------------VSACAQLEDLNLGREIHW-----------------------------YISESGLTLTVPLANALM 222 (588)
Q Consensus 187 ---------------l~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~ 222 (588)
+..+.+.++++.++++.. .+.+. .+-+.....-+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 223333444443333321 11111 011233333344
Q ss_pred HHHHhcCChhHHHHHHHhcCC-C-C----cchHHHHHHHHHhcCC---HHHHHHH-------------------------
Q 007818 223 DMYVKCGKLESAEEIFDSMVN-K-T----VVSCTTMIVGYAKFGF---LDIARKI------------------------- 268 (588)
Q Consensus 223 ~~~~~~g~~~~A~~~~~~~~~-~-~----~~~~~~ll~~~~~~~~---~~~a~~~------------------------- 268 (588)
....+.|+.++|.++|+.... + + ......++..+.+.+. ..++..+
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 455677899999999988855 2 1 2233356666666554 2222222
Q ss_pred hhhCCCC-----CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 269 FDDLPEK-----YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 269 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
+...... +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++.+...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 2222222 33347777777776 7888999988888775 477665545556667899999999999987654
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII---GGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
+|+...+..+...+.+.|++++|...++...+.++....... ......|++++|+..+++..+. .|+...+..+.
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 344455667778889999999999999988765444433333 3344559999999999999985 67788899999
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVS 498 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 498 (588)
.++.+.|++++|+..+++... ..+.+...+..+..++...|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999997 34556788889999999999999999999987 3455 5778889999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 549 (588)
+|+..+++++++.|++..+....++...+..+++.|.+.+++....++...
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999998877655433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=9.5e-22 Score=182.58 Aligned_cols=378 Identities=15% Similarity=0.149 Sum_probs=276.7
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh-hhHHHHHH
Q 007818 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV-PLANALMD 223 (588)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 223 (588)
..+|..+...+-..|+++.|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.. |+. .....+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 3445555555555555555555555555431 1123345555555555555555555555554431 211 12233333
Q ss_pred HHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc---cHHHHHHHHHhcCChHHHH
Q 007818 224 MYVKCGKLESAEEIFDSMVNKT---VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV---PWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~ 297 (588)
.....|+..+|...+-+..+.+ ...|+.+...+-.+|+...|+..|++...-++. .|-.|...|...+.+++|.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 4444566666666665554332 245666666666677777777777766554432 3778888898999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-
Q 007818 298 ALFHEMQATGIKPD-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE- 375 (588)
Q Consensus 298 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 375 (588)
..|...... +|+ ...+..+...|...|.++.|+..+++..+..+. -+..|+.+..++-..|+..+|.+.|.+...
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999887764 454 456677777788999999999999988876422 356789999999999999999999998764
Q ss_pred --CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHH
Q 007818 376 --RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKH 451 (588)
Q Consensus 376 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 451 (588)
....+.+.|...|...|.+++|..+|....+ +.|.- ...+.+...|-++|++++|+..++++. .+.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3456788999999999999999999999887 45654 478889999999999999999999998 55777 678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
|+.+...|...|+...|.+.+.++ ...|. ....+.+...+...|++.+|++.++.++++.|+-|.++.+++.++.--.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999887 45665 5688899999999999999999999999999999999999988876655
Q ss_pred ChHH
Q 007818 530 MWEE 533 (588)
Q Consensus 530 ~~~~ 533 (588)
+|.+
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 5544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-20 Score=174.36 Aligned_cols=420 Identities=13% Similarity=0.076 Sum_probs=337.6
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCVR---NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 193 (588)
...|.+-..+.|++.+|++.....-.. +....-.+-..+.+..+.+....--....+. .+--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 344556667789999998876553222 1112222233455555666554443333332 244567899999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchH---HHHHHHHHhcCCHHHHHHHhh
Q 007818 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC---TTMIVGYAKFGFLDIARKIFD 270 (588)
Q Consensus 194 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~ 270 (588)
|+++.|..+++.+++.... ....|..+..++...|+.+.|...|....+-++..+ +.+...+-..|+.++|...+.
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999999988543 677899999999999999999999999877665433 234444556889999998888
Q ss_pred hCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCc
Q 007818 271 DLPEKYV---VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346 (588)
Q Consensus 271 ~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (588)
+..+..+ ..|..|.-.+..+|+...|+..|++.... .|+ ...|..+-..|...+.++.|...+....... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7665433 33999999999999999999999999885 454 4578888999999999999999887776653 224
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...|..+|.++.|...|++..+ |+ +..|+.|..++-..|+..+|...|.+..... +-.....+.+...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 55677788889999999999999999874 43 5689999999999999999999999998852 33456889999999
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 500 (588)
...|.++.|..+|....+ +.|. ....+.|...|..+|++++|...+++. .++|. ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999999986 3454 677899999999999999999999986 67786 66899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.+.+++..+|--+.++.+|+.+|..+|+..+|+.-++...+..
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1e-19 Score=187.27 Aligned_cols=419 Identities=11% Similarity=-0.020 Sum_probs=278.5
Q ss_pred HHHHHHHhCCChhHHHHHhccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh
Q 007818 119 AVIHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
.....+.+.|+++.|+..|++. ..|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 4445566677777777777663 23455566666777777777777777777766542 22334566666677777777
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
++|...+..+...+...+.. ...++..+........+...++.-. .+...+..+.. +...........-+....+.+
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 77776665554432211111 1111111111111222333332211 12222222222 211111111111111111111
Q ss_pred cc---cHHHHHHHH---HhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcch
Q 007818 277 VV---PWNAIIGGY---VQAKRSKEALALFHEMQATG-IKP-DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348 (588)
Q Consensus 277 ~~---~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (588)
.. .+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+... ....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 11 111111111 23468999999999998865 234 345567777778889999999999999887642 2355
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 777888899999999999999988763 356788899999999999999999999999863 3455677888889999
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-------h-HHHHHHHHHHhhCC
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADV-------V-VWGALFFACRLHGN 496 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-------~-~~~~l~~~~~~~~~ 496 (588)
.|++++|...+++..+ ..+.+...++.+..++...|++++|.+.|++. ...|+. . .+......+...|+
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999987 44556888999999999999999999999986 333321 1 11122222344699
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+++|...++++++++|++..++..++.++.+.|++++|+++|++..+..
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999997653
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1e-18 Score=171.24 Aligned_cols=430 Identities=11% Similarity=0.060 Sum_probs=259.6
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch--H
Q 007818 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVR------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT--M 183 (588)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~ 183 (588)
-++.+.+.|.+.|...|++..+..+....... -..+|-.+.++|-..|++++|...|-+..+. .|+..+ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 34455555555555555555555555442211 1223445555555555555555555544433 233322 2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHhcCCC---CcchHHHHHHHH
Q 007818 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG----KLESAEEIFDSMVNK---TVVSCTTMIVGY 256 (588)
Q Consensus 184 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 256 (588)
.-+...+...|+.+.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++....++ |...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 23445555555555555555555554 2224444445555554443 344455555444433 222333333333
Q ss_pred HhcCC------HHHHHHHhhhCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHH
Q 007818 257 AKFGF------LDIARKIFDDLPEK-YVVPWNAIIGGYVQAKRSKEALALFHEMQAT---GIKPDA------VTTVHCLS 320 (588)
Q Consensus 257 ~~~~~------~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~l~~ 320 (588)
....- +..|..++...... .+...|.+...+...|.+..|...|+..... ...+|. .+--.+..
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 22221 22233333222222 1222677777777777888887777776654 112222 12233444
Q ss_pred HHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhcCChHHH
Q 007818 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHGKALDA 397 (588)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 397 (588)
..-..++.+.|.+.++.+.+..+. -+..|-.++.+....+...+|...++.+. ..++..+..+...+.....+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 555666777777877777765311 12222233322233356677777777665 34667777777788887777777
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHhcc------------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 398 ISYFSEMIGVG-LMPDEITFLGILSACCH------------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 398 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++.+ ..+.+...-+.+.-.++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 77666655432 23566666666665542 2456788888888887 556777888889999999999
Q ss_pred hHHHHHHHHhCCC--CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC--CCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 465 LEEAEQLIRSMPM--AADVVVWGALFFACRLHGNVSIGERAAMKLLELD--PQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 465 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
+.+|..+|.+... .....+|..+...|..+|++-.|+++|+..++.. .+++.++..|++++.+.|.+.+|.+....
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999998852 2356789999999999999999999999998644 34788899999999999999999999988
Q ss_pred HHhcCCc
Q 007818 541 MEERGVE 547 (588)
Q Consensus 541 ~~~~~~~ 547 (588)
.....+.
T Consensus 742 a~~~~p~ 748 (1018)
T KOG2002|consen 742 ARHLAPS 748 (1018)
T ss_pred HHHhCCc
Confidence 8765443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.3e-17 Score=174.85 Aligned_cols=408 Identities=11% Similarity=0.003 Sum_probs=216.6
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCC
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSG 159 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~ 159 (588)
.-.+......|+.++|..++....... +.+...+..+...+.+.|++++|..+|++ ..+.+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 344455555666666666666665422 23334455666666666666666666665 23334455556666666677
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 007818 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239 (588)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 239 (588)
++++|+..+++..+.. +.+.. +..+...+...|+.++|...++.+.+..+. +...+..+..++...|..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 7777777777766542 22333 555666666677777777777777766333 44555556667777777777777777
Q ss_pred hcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCCh---HHHHHHHHHHHHC-CCCCCHH-H
Q 007818 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS---KEALALFHEMQAT-GIKPDAV-T 314 (588)
Q Consensus 240 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~~p~~~-~ 314 (588)
.... ++..... +. ...+...+... +.......+++ ++|++.++.+.+. ...|+.. .
T Consensus 175 ~~~~-~p~~~~~-l~-------~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 175 DANL-TPAEKRD-LE-------ADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred hCCC-CHHHHHH-HH-------HHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 6654 2210000 00 00000000000 00001111223 5677777777653 1223221 1
Q ss_pred HHH----HHHHHcccCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHhHhcCChhHHHHHhccCCCCC-------cchHH
Q 007818 315 TVH----CLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-------SLTYT 382 (588)
Q Consensus 315 ~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~ 382 (588)
+.. .+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+.+ .....
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 110 122334556677777777766665422 221 11224556666777777777766654321 12344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGL-----------MPDE---ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (588)
.+..++...|++++|..+++.+..... .|+. ..+..+...+...|++++|++.++++.. ..+.+
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n 392 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGN 392 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 455566667777777777776665420 1221 1233445555566666666666666655 33444
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
...+..++..+...|++++|++.++++. ..|+ ...+...+..+...|++++|+..++++++..|+++.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 5556666666666666666666666552 3343 334444444555666666666666666666666553
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.8e-19 Score=176.31 Aligned_cols=299 Identities=10% Similarity=0.009 Sum_probs=202.2
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 007818 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301 (588)
Q Consensus 222 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (588)
...+...|++++|...|.++.+.++. +...+..+...+...|++++|..+++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE----------------------------TVELHLALGNLFRRRGEVDRAIRIHQ 93 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc----------------------------cHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34456667777777777777544321 11124444455555555555555555
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC-
Q 007818 302 EMQATGIKPD---AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN- 377 (588)
Q Consensus 302 ~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 377 (588)
.+...+..++ ...+..+...+...|+++.|..+++.+.+.. +.+..++..++..+...|++++|.+.++.+.+.+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 94 NLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 5554321111 1234455555555566666666665555432 2234455566666666666666666666554321
Q ss_pred -------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH
Q 007818 378 -------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450 (588)
Q Consensus 378 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 450 (588)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 250 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSE 250 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHH
Confidence 1134556777888899999999999988753 334557777888899999999999999999864 2222245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc--
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD-- 527 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 527 (588)
.+..++.+|...|++++|.+.++++. ..|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 67888999999999999999999873 457766677888889999999999999999999999766 44444444443
Q ss_pred -cCChHHHHHHHHHHHhcCCccCCce
Q 007818 528 -SNMWEEAGKVRKMMEERGVEKTPGC 552 (588)
Q Consensus 528 -~g~~~~A~~~~~~~~~~~~~~~~~~ 552 (588)
.|+.++|..+++++.++++.++|.+
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5699999999999999888888873
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=9.7e-18 Score=175.76 Aligned_cols=404 Identities=11% Similarity=0.015 Sum_probs=280.9
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 007818 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187 (588)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 187 (588)
+.++....-.+.+....|+.++|++++.+..+ .+...+..+...+...|++++|.+++++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45566666777777888888888888887543 344457888888888888888888888877652 33445566677
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHH
Q 007818 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK---TVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 264 (588)
..+...|+.++|...++.+.+... .+.. +..+..++...|+.++|+..++++.+. +...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 777888888888888888887733 3445 777788888888888888888887553 22334444555555555555
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----cccCCh---hHHHHHHH
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC-----SQLGAL---DDGIWIHR 336 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~---~~a~~~~~ 336 (588)
|.+.++.+.. ++. +. ...+. ......+... ...+++ +.|+..++
T Consensus 169 Al~~l~~~~~-~p~-~~-------------~~l~~-------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 169 ALGAIDDANL-TPA-EK-------------RDLEA-------------DAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHhCCC-CHH-HH-------------HHHHH-------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 5555554443 111 00 00000 0001111111 112223 66778887
Q ss_pred HHHHh-CCCCcch-HHH-H---HHHHhHhcCChhHHHHHhccCCCCC---cc-hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 337 FIEKE-NFNLNVV-LGT-A---LVDMYAKCGNIAKALQVFHEMPERN---SL-TYTAIIGGLALHGKALDAISYFSEMIG 406 (588)
Q Consensus 337 ~~~~~-~~~~~~~-~~~-~---l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (588)
.+.+. ...|+.. .+. . .+..+...|++++|...|+.+.+.+ +. .-..+..+|...|++++|+..|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 77754 2233321 111 1 1234467799999999999988542 21 223357789999999999999999876
Q ss_pred CCCCC---CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC----------CCCC---hHHHHHHHHHHHhcCChHHHHH
Q 007818 407 VGLMP---DEITFLGILSACCHGGLVDEGRKYFAQMSSIFR----------LSPK---LKHYSCMVDLLGRSGLLEEAEQ 470 (588)
Q Consensus 407 ~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~ 470 (588)
..... .......+..++...|++++|.++++.+..... ..|+ ...+..++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 53111 124566677788999999999999999987410 0122 2345677888999999999999
Q ss_pred HHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 471 LIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 471 ~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+++++. ..| +...+..++..+...|++++|++.+++++++.|+++..+..++..+.+.|++++|.++++++.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999873 334 567888888889999999999999999999999999999999999999999999999999998753
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4.2e-18 Score=174.56 Aligned_cols=409 Identities=9% Similarity=-0.055 Sum_probs=252.9
Q ss_pred HhCCChhHHHHHhccCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhH
Q 007818 125 VSCGDLGLACNVFDESCVR------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 125 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 198 (588)
.+..+++.-.-+|...++. +......++..+.+.|+++.|..+++...... +-+...+..++.++...|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 3455555555555443221 22233444555666666666666666665542 2222333344445555666666
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc
Q 007818 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 278 (588)
|...++.+.+..+. +...+..+...+...|++++|...+++..+.++ .+..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----------------------------~~~~ 145 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----------------------------GNSQ 145 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------CcHH
Confidence 66666666655322 344555555556666666666665555533211 1222
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
.+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 35556666777777777777777665543 2222222222335667777777777777666543333444445566777
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHH
Q 007818 359 KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALD----AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 431 (588)
..|++++|...+++..+ .+...+..+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888877653 245567778888888888875 788898888753 3345678888889999999999
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhH-HHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVV-WGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...++++.+. .+.+...+..+..+|.+.|++++|.+.++++. ..|+... +..+..++...|++++|...++++++
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998874 34456677788889999999999999998874 4565433 33345667889999999999999999
Q ss_pred cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCC--CCCcchHHHHHHHHHHHhh
Q 007818 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD--KSHPELEQIYDCLVQLTRH 587 (588)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 587 (588)
..|++. ...+++|...+.+..+.--.+...-.|.. -+.++ ..++..+.....|.-+++|
T Consensus 381 ~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~~~~W~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (656)
T PRK15174 381 ARASHL------------PQSFEEGLLALDGQISAVNLPPERLDWAW-------EVAGRQSGIERDEWERRAKWGYLADN 441 (656)
T ss_pred hChhhc------------hhhHHHHHHHHHHHHHhcCCccchhhHHH-------HHhcccccCChHHHHHHHHhhHHHHH
Confidence 999764 34556777777777654333332212320 01221 3455555555555555544
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.1e-17 Score=159.50 Aligned_cols=514 Identities=13% Similarity=0.065 Sum_probs=344.8
Q ss_pred hhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc-CCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 28 LDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN-GGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 28 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
++.|-..|..+. ++|.-..-.=.......+++..|+.+|...... ...+||+.+ .+..++.+.++.+.|...|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 467777776654 333333333333445567899999999986551 234455543 33456678899999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhC---CChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCC-
Q 007818 104 HVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV- 176 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~- 176 (588)
++.+..+ -++.++-.|...-... ..+..+..++.. ....|+...+.|...+.-.|++..++.+...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9988652 2333333333222222 335566666655 3456888889999999999999999999888876421
Q ss_pred -CCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHH
Q 007818 177 -EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK---TVVSCTTM 252 (588)
Q Consensus 177 -~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 252 (588)
..-...|..+.+++-..|++++|..+|.+..+.........+.-|...|...|+++.+...|+.+... +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 12234577888999999999999999988877644333445567888999999999999999888553 33455555
Q ss_pred HHHHHhcC----CHHHHHHHhhhCCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHH
Q 007818 253 IVGYAKFG----FLDIARKIFDDLPEKYVV---PWNAIIGGYVQAKRSKEALALFHEM----QATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 253 l~~~~~~~----~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~ 321 (588)
...|+..+ ..+.|..++.......+. .|-.+...+-...-+ .++..|... ...+-.+.....+.+...
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 55565553 456777777776654433 355555555444333 335555443 344545677788888888
Q ss_pred HcccCChhHHHHHHHHHHHh---CCCCcc------hHHHHHHHHhHhcCChhHHHHHhccCCCCCc---chHHHHHHHHH
Q 007818 322 CSQLGALDDGIWIHRFIEKE---NFNLNV------VLGTALVDMYAKCGNIAKALQVFHEMPERNS---LTYTAIIGGLA 389 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~ 389 (588)
....|+++.|...|...... ...++. .+--.+..++-..++++.|.+.|..+.+..+ ..|..++....
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 88889999998888776554 122222 1233355666677788888898888875433 34545544444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh--------
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-------- 461 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 461 (588)
..++..+|...+....... .-++..+..+...+.+...+..|..-|+...+.....+|+.+.-.|...|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 5577888888888877753 4555566666667777778888888777766653344566666666665542
Q ss_pred ----cCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHH
Q 007818 462 ----SGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 462 ----~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (588)
.+..++|+++|.++ ...| +...-+.+.-.++..|++..|..+|.++.+-..+.+.+|.+++.+|..+|+|-.|+
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 24567788887765 3444 45566667777888899999999998888877777888999999999999999999
Q ss_pred HHHHHHHhcCC
Q 007818 536 KVRKMMEERGV 546 (588)
Q Consensus 536 ~~~~~~~~~~~ 546 (588)
++|+...+.-.
T Consensus 701 qmYe~~lkkf~ 711 (1018)
T KOG2002|consen 701 QMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHhc
Confidence 99988876544
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.2e-18 Score=170.64 Aligned_cols=288 Identities=16% Similarity=0.103 Sum_probs=132.0
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCChhH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT---VPLANALMDMYVKCGKLES 233 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 233 (588)
..|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444431 11222344444444444444444444444443221111 1233444555555555555
Q ss_pred HHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc--------cHHHHHHHHHhcCChHHHHHHHHH
Q 007818 234 AEEIFDSMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV--------PWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 234 A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
|..+|+++.+. +..++..++..+.+.|++++|.+.++.+...++. .+..+...+...|++++|...+++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555554331 2223333333333333333333333332221110 123344455556666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcch
Q 007818 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLT 380 (588)
Q Consensus 303 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 380 (588)
+.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|...|++++|...++++.+ |+...
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 55532 2223344445555555566666666655555443222233445555555555555555555555432 33344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---CCchHHHHHHHHHhhhhcCCCCCh
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH---GGLVDEGRKYFAQMSSIFRLSPKL 449 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 449 (588)
+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 455555555555555555555555543 4555555555444332 33555555555555544 444443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=4.4e-16 Score=159.96 Aligned_cols=441 Identities=11% Similarity=0.036 Sum_probs=304.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNF--TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (588)
+-...+.|++..|++.|++..+ ..|+.. .+ .++..+...|+.++|...+++... .-+........+...+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHc
Confidence 3345788999999999999877 456542 33 777777788999999999888882 1122233344445678888
Q ss_pred CChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHH
Q 007818 128 GDLGLACNVFDESC---VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204 (588)
Q Consensus 128 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 204 (588)
|++++|+++|+++. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999998853 335566667777888889999999999888765 5565555444444444556656888888
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHH
Q 007818 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283 (588)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 283 (588)
++.+.. +.+...+..+..++.+.|-...|.++...-+.- +...+..+ ..+.+.+..+....+..
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~------ 258 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR------ 258 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc------
Confidence 888884 336777788888888888888888887765321 11111110 11111122111110000
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 007818 284 IGGYVQAK---RSKEALALFHEMQAT-GIKPDA-VTT----VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354 (588)
Q Consensus 284 ~~~~~~~~---~~~~a~~~~~~~~~~-~~~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (588)
...+ -.+.|+.-++.+... +-.|.. ..| .-.+-++...+++.++++.++.+...+.+....+-.++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0011 134555555555542 112321 212 223456677888888888888888888666666778888
Q ss_pred HHhHhcCChhHHHHHhccCCCC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH-
Q 007818 355 DMYAKCGNIAKALQVFHEMPER---------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-----------MPDE- 413 (588)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~- 413 (588)
++|...+++++|..+|+.+..+ +......|.-+|...+++++|..+++.+.+... .||+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 9999999999999998887532 122246788888899999999999998887321 1232
Q ss_pred -H-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHH
Q 007818 414 -I-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFF 489 (588)
Q Consensus 414 -~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~ 489 (588)
. .+..++..+...|++.+|++.++++.. .-|-+......+.+.+...|.+.+|++.++... ..|+ ..+....+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 344567778899999999999999987 556778999999999999999999999998763 4564 556667777
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
++...+++.+|.....++++..|+++..-
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88889999999999999999999987443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.3e-16 Score=164.47 Aligned_cols=417 Identities=10% Similarity=-0.037 Sum_probs=262.2
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCC
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGF 160 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 160 (588)
.....+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|++.++.. .+.+..+|..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3444555666777777777766653 355556666666667777777777666652 33344566666667777777
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++|+..|......+ ..+......++..... ..+........+.. +++...+..+.. +...........-+..
T Consensus 210 ~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 777776665544321 1111111111111111 11122222222221 111112222211 1111111111111111
Q ss_pred cCCCCcc---hHHHHHHH---HHhcCCHHHHHHHhhhCCCCC------cccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007818 241 MVNKTVV---SCTTMIVG---YAKFGFLDIARKIFDDLPEKY------VVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308 (588)
Q Consensus 241 ~~~~~~~---~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 308 (588)
..+.+.. .+..+... ....+.+++|.+.|+.....+ ...|+.+...+...|++++|+..+++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 1111111 11111111 122356777877777765432 223777778888899999999999998875
Q ss_pred CCC-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHH
Q 007818 309 KPD-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAI 384 (588)
Q Consensus 309 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l 384 (588)
.|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 5577778888888999999999999887764 33567788889999999999999999988764 2 45567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hH-------HHHHHH
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LK-------HYSCMV 456 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~ 456 (588)
...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.... .|+ .. .++...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 888999999999999999988752 445678888899999999999999999998864 222 11 122222
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
..+...|++++|.+++++. ...|+ ...+..+...+...|++++|+..+++++++.+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3344579999999999885 45554 456788888999999999999999999998875433
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.6e-17 Score=170.37 Aligned_cols=357 Identities=11% Similarity=0.015 Sum_probs=260.0
Q ss_pred HhCCChhHHHHHHHHhHHC--CCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 156 VRSGFPREAIRLFRDMQLE--RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
.+..+|+.-.-.|..-.++ .-.-+......++..+.+.|+++.|..+++..+..... +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 4455555555454443221 01112233444555566666666666666666665333 23333444455555666666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313 (588)
Q Consensus 234 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 313 (588)
|...++++...++ .+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 95 A~~~l~~~l~~~P----------------------------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~ 145 (656)
T PRK15174 95 VLQVVNKLLAVNV----------------------------CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQ 145 (656)
T ss_pred HHHHHHHHHHhCC----------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 6666655533222 223346677788889999999999999998852 33456
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC----CcchHHHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER----NSLTYTAIIGGLA 389 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~ 389 (588)
.+..+...+...|++++|...++.+......+.. .+..+ ..+...|++++|...++.+.+. +...+..+..++.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 7778888999999999999999988776544332 33333 3478899999999999987643 2334455567889
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHH----HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE----GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (588)
..|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.+. .+.+...+..++..+.+.|++
T Consensus 224 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 224 AVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999864 4456678888899999999985 89999999873 345678899999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 466 EEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 466 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
++|...++++. ..| +...+..+..++...|++++|+..++++++..|+++..+..++.++...|++++|.+.++++.+
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999873 445 4556777888899999999999999999999998887777788999999999999999999987
Q ss_pred cCCc
Q 007818 544 RGVE 547 (588)
Q Consensus 544 ~~~~ 547 (588)
....
T Consensus 381 ~~P~ 384 (656)
T PRK15174 381 ARAS 384 (656)
T ss_pred hChh
Confidence 6543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=5.6e-16 Score=159.20 Aligned_cols=432 Identities=11% Similarity=0.010 Sum_probs=296.8
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHH---HHHHHhCCC
Q 007818 86 FKVCASLGLRFLGYEIFGHVLKLGFDVDM--YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL---INGFVRSGF 160 (588)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~ 160 (588)
+-...+.|+++.|...|++..+.. |+. .++ .++..+...|+.++|+..+++...|+...+..+ ...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 334568888999999999988865 332 344 777888888999999999888766644444333 346677799
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999988763 333455666677778888888888888888776 33444444444444445666568888888
Q ss_pred cCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 241 MVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317 (588)
Q Consensus 241 ~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 317 (588)
+.+. +...+..+..++.+.|-...|.++...-+. ..+-..... =+.+.+.+..+. +..|+..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~~vr~----a~~~~~~---- 259 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAEQVRM----AVLPTRS---- 259 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHHHHhh----ccccccc----
Confidence 7543 344566666777777777777776665432 111000000 011112222111 1111100
Q ss_pred HHHHHcccCC---hhHHHHHHHHHHHh-CCCCcc-hHH-HH---HHHHhHhcCChhHHHHHhccCCCC----CcchHHHH
Q 007818 318 CLSACSQLGA---LDDGIWIHRFIEKE-NFNLNV-VLG-TA---LVDMYAKCGNIAKALQVFHEMPER----NSLTYTAI 384 (588)
Q Consensus 318 l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~-~~~-~~---l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l 384 (588)
...+ .+.|+.-++.+... +..|.. ..| .+ -+-++...|+++++.+.|+.+..+ ...+-..+
T Consensus 260 ------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 ------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 1112 24444445554442 222321 222 22 344667889999999999999843 33466788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC----------CCCC-
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGL-----MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR----------LSPK- 448 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~- 448 (588)
.++|...+++++|..+|+++..... .++......|..++..++++++|..+++.+.+... -.|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 9999999999999999999876531 22333457889999999999999999999987311 0122
Q ss_pred --hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 449 --LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 449 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
...+..++..+...|++.+|++.++++. ..| +...+..+...+...|...+|++.++.+..+.|++..+....+.+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 2344567888899999999999999984 335 788888999999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHHHhc
Q 007818 525 YRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...|+|.+|.++.+.+.+.
T Consensus 494 al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhh
Confidence 99999999999998777554
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=8.2e-17 Score=144.70 Aligned_cols=460 Identities=13% Similarity=0.074 Sum_probs=298.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHH-HHHHHHHccCChhhHHHHHHHHHHhcCCCChhH----HHHHHH
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP-LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV----HNAVIH 122 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~ 122 (588)
.|.+-|..+....+|+..|+-+.+ ...-|+.-... .+...+.+.+.+.+|.++++..+..-+..+..+ .+.+--
T Consensus 206 nlaqqy~~ndm~~ealntyeiivk-nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVK-NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhc-ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 344556666677788888877766 44556554332 233456677778888888877776543233222 333333
Q ss_pred HHHhCCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHH
Q 007818 123 VFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 200 (588)
.+.+.|+++.|+.-|+... .||..+-..|+-++..-|+-++..+.|.+|+.--..||..-|. ....+++..
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi------~~~ddp~~~- 357 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI------KEKDDPDDN- 357 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc------CCcCCcchH-
Confidence 4567788888888877743 3555444445555556677778888888777644344443331 000010000
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHhc----CCCCcc---------------------hHHHHH
Q 007818 201 EIHWYISESGLTLTVPLANALMDMYVKCG--KLESAEEIFDSM----VNKTVV---------------------SCTTMI 253 (588)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~----~~~~~~---------------------~~~~ll 253 (588)
++.+. .-+..++-.-+.+ +.++++-.-.++ ..++.. .-..-.
T Consensus 358 -ll~ea----------i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 358 -LLNEA----------IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred -HHHHH----------HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00000 0011111111111 111111111111 111110 000112
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCCcccH----HHHHHHH-Hh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCC
Q 007818 254 VGYAKFGFLDIARKIFDDLPEKYVVPW----NAIIGGY-VQ-AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327 (588)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~l~~~~-~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 327 (588)
..+.+.|+++.|.++++-....+..+- +.|...+ .+ -.++..|..+-+...... +-+......--......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 237789999999999988877665552 2222222 22 335666666666554432 2233333333334456799
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
+++|...+++.....-.-....|| +.-.+-..|++++|++.|-++. ..+..+.-.+.+.|....++.+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988764332333333 3445678899999999997765 467778888899999999999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhH
Q 007818 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVV 483 (588)
Q Consensus 405 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 483 (588)
... ++.|+.....+...|-+.|+-.+|.+.+-.--+ -++-+..+...|...|....-+++|..+|++.. .+|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 765 566778899999999999999999998776655 567788999999999999999999999999885 6899999
Q ss_pred HHHHHHHH-HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 484 WGALFFAC-RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 484 ~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
|..++..| .+.|++++|...++...+..|.|..++..|.+.+...|..
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99988886 5689999999999999999999999999999999988864
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=9e-14 Score=131.03 Aligned_cols=454 Identities=12% Similarity=0.030 Sum_probs=266.2
Q ss_pred ccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHH
Q 007818 91 SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRL 167 (588)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 167 (588)
...+.+.|.-++.++.+.- +.+... .-+|++...++.|..+++. ..+.+...|.+....--.+|+.+.+.++
T Consensus 388 elE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555555531 222222 2234444455555555543 3444555555555555555555555555
Q ss_pred HHHh----HHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 168 FRDM----QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT--VPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 168 ~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
+++- ...|+..+...|..=...|-..|..-.+..+....+..|+... ..++..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 4432 3345555555554444455555555555555555544444321 234444444444444454444444444
Q ss_pred CCC-------------------------------------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCc---ccHH
Q 007818 242 VNK-------------------------------------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV---VPWN 281 (588)
Q Consensus 242 ~~~-------------------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 281 (588)
.+- ....|-.....+-..|+...|..++..+.+.++ ..|-
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 332 222333334444455666666666655543222 2255
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
..+.....+..+++|..+|.+.... .|+...|.--+..---.++.++|++++++..+. ++.-...|..+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 5555556666666666666665553 455555554444445556666666666655554 2223445666666666666
Q ss_pred ChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
+.+.|.+.|..-.+ | .+..|..|...--+.|++-.|..+++..+..+ +-+...|...++.-.+.|..+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655543 2 34456666666666667777777777766654 44555666667777777777777777766
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+.+ ..+.+...|..-|....+.++-....+.+++.. .|+.....+...+....++++|...|.++++.+|++..+|
T Consensus 779 ALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 779 ALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 666 444555566666666666666566666665553 3445556666677788899999999999999999999999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECC
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (588)
...-..+.+.|.-++-.++++..... +|.-|-.|..+..
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999999999999999999764 4555656654443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.9e-15 Score=132.51 Aligned_cols=405 Identities=13% Similarity=0.111 Sum_probs=272.5
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHH--hCCChhH------------------------H
Q 007818 80 FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV--SCGDLGL------------------------A 133 (588)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~------------------------A 133 (588)
.+=+.+++. ...|.+..+.-+++.|.+.|++.+..+-..|+..-+ ...+..- .
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455566554 456789999999999999998888877777765432 2222111 1
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 007818 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213 (588)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (588)
.+++-+..+.+..+|.++|.++++-...+.|.+++++-.+...+.+..+||.+|.+-.-..+ .+++.+|.+..+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 12344445567778888888888888888888888888877778888888888876443222 67788888888888
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCCh
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 293 (588)
|..|+|+++.+..+.|+++.|.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar---------------------------------------------------------- 293 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDAR---------------------------------------------------------- 293 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHH----------------------------------------------------------
Confidence 8888888888888888876654
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhH-HHHHHHHHHH----hCCCC----cchHHHHHHHHhHhcCChh
Q 007818 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD-GIWIHRFIEK----ENFNL----NVVLGTALVDMYAKCGNIA 364 (588)
Q Consensus 294 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~ 364 (588)
..|.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. ..++| +...|...+..|.+..+.+
T Consensus 294 ~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 294 KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHH
Confidence 3567888899999999999999999888888877654 3444444432 22322 3344566677777888888
Q ss_pred HHHHHhccCCCC-----------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 365 KALQVFHEMPER-----------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 365 ~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
-|.++-.-+... ...-|..+....|+....+.-+..|+.|.-.-+-|++.+...++++..-.|.++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 777766554421 223466677778888888999999999988878899999999999998899998888
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcC-Ch--------H-----HHHHHHHhCC--------CCCCHhHHHHHHHHH
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSG-LL--------E-----EAEQLIRSMP--------MAADVVVWGALFFAC 491 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~~~~~--------~~~~~~~~~~l~~~~ 491 (588)
++|..+..- |..........+...+++.+ +. . -|..+++... .+-....++..+-.+
T Consensus 454 Riw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll 532 (625)
T KOG4422|consen 454 RIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILL 532 (625)
T ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHH
Confidence 888888775 65555444444444454443 11 0 0111222111 122344455555556
Q ss_pred HhhCCHHHHHHHHHHHhccC---CCCCc--hHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 492 RLHGNVSIGERAAMKLLELD---PQDSG--IYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.+.|..++|.+++....+.. |..|. +..-+.+.-.+......|..+++.+...+.+.
T Consensus 533 ~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 533 LRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 67777777777777775433 33322 22244555556677777777777776665544
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.5e-15 Score=131.70 Aligned_cols=373 Identities=12% Similarity=0.074 Sum_probs=215.5
Q ss_pred cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhH
Q 007818 37 NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116 (588)
Q Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (588)
+..+.+..+|..||.++|+-...++|.++|++... ...+.+..+||.+|.+-+-.. ..+++.+|.+..+.||..|
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHh
Confidence 33455666777777777777777777777777666 345666677777766544222 2667777777777777777
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
+|+++.+.++.|+++.|. ..|++++.+|++-|+.|...+|..+|..+.+.++.
T Consensus 276 fNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 777777777777666654 45788899999999999999999999998888776
Q ss_pred hH-HHHHHHHHHHh--C--CC----CChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007818 197 NL-GREIHWYISES--G--LT----LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 197 ~~-a~~~~~~~~~~--~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 267 (588)
.+ +..++.++... | +. .+...|...+..|.+..+.+-|.++..-+...+...+ .|.
T Consensus 329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~---------ig~------ 393 (625)
T KOG4422|consen 329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF---------IGP------ 393 (625)
T ss_pred hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh---------cCh------
Confidence 44 44455555432 1 22 2344566777777777777777766555433211000 000
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
.+ ....-|..+....++....+.-...|+.|.-.-.-|+..+...++++..-.+.++-..+++..+...|...+.
T Consensus 394 ~~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 394 DQ-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 00 0001144555666666777777777777777666777777777777777777777777777777766644433
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA--LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.....++..+++.+- .|+...-..+-.+.. ...-.+.....-.+|++. .......+.++-.+.+
T Consensus 469 ~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 469 DLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHH
Confidence 333333333333220 111110000100000 001111122222334433 2333445555555666
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHH---HHHHHHHhcCChHHHHHHHHhC
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYS---CMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.|..++|.+++..+.++.+--|.....+ .+++.-.+..+...|..+++-+
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777777777776654433333333344 3444445566666666666655
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=5.6e-14 Score=137.56 Aligned_cols=518 Identities=14% Similarity=0.116 Sum_probs=285.3
Q ss_pred CCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 007818 25 SKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101 (588)
Q Consensus 25 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 101 (588)
.|+.++|.+++.++. +.+...|..|...|-..|+.+.+...+-.+. +-.+.|...|..+.......|++++|.-+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 366666666665543 3444556666666666666555554432222 11222333444444444555555555555
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---------------------------------------CC
Q 007818 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---------------------------------------CV 142 (588)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------------------------~~ 142 (588)
+.++++.. |++....-.-+..|-+.|+...|...|.++ ..
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555543 233333333444444555555544444332 11
Q ss_pred -----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC----------------------CcchHH----HHHHHHh
Q 007818 143 -----RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP----------------------DEVTMI----GMVSACA 191 (588)
Q Consensus 143 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----------------------~~~~~~----~ll~~~~ 191 (588)
-+...+++++..+.+...++.+......+......+ +...|. .++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 133446666666777777777777666665411111 111111 2233344
Q ss_pred ccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhcCCHHHH
Q 007818 192 QLEDLNLGREIHWYISESGL--TLTVPLANALMDMYVKCGKLESAEEIFDSMVNK----TVVSCTTMIVGYAKFGFLDIA 265 (588)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a 265 (588)
..+..+....+...+.+..+ .-+...|..+.+++...|++..|+.+|..+... +...|-.+..+|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55556666666666666653 335667888999999999999999999988653 556888899999999999999
Q ss_pred HHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHcccCChhHHHHH
Q 007818 266 RKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQA--------TGIKPDAVTTVHCLSACSQLGALDDGIWI 334 (588)
Q Consensus 266 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 334 (588)
.+.++.+....+.. -..|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999887655444 44566678889999999999988542 22345555555556666777777665444
Q ss_pred HHHHHHhCC----------------------CCcchHHHHHHHHhHhcCChhHHHHHhccCC--------CCCc----ch
Q 007818 335 HRFIEKENF----------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMP--------ERNS----LT 380 (588)
Q Consensus 335 ~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~----~~ 380 (588)
...+..... .........++.+-.+.++.....+-...-. .-.. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 433332110 0111111222222222222211111111110 0011 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGL--MPDEI---TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHY 452 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 452 (588)
+.-++..+++.+++++|+.+...+..... .++.. .-...+.+++..+++..|...++.+...++...+ ...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34455667777888888887777665431 22221 1233445566777777777777777664332222 2333
Q ss_pred HHHHHH-----------------------------------HHhcCChHHHHHHHHhC-CCCCCHhHHHHHHH-HH----
Q 007818 453 SCMVDL-----------------------------------LGRSGLLEEAEQLIRSM-PMAADVVVWGALFF-AC---- 491 (588)
Q Consensus 453 ~~l~~~-----------------------------------~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~-~~---- 491 (588)
+..... +..++.+.-|+..+-++ ...|+.+..+..+. ++
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a 788 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLA 788 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 322222 22334555666554433 23344332222211 11
Q ss_pred ------HhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 492 ------RLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ------~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++-..-++...+.+..++... ...++.+++++|...|-.--|..+++++++-.
T Consensus 789 ~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 789 LQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 1222334566666666655543 56789999999999999999999999997653
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.3e-13 Score=125.18 Aligned_cols=534 Identities=11% Similarity=0.058 Sum_probs=312.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCCh-hHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM-YVHNAV 120 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 120 (588)
+...|-...+--..++++..|..+|++.+. . -..+...+.-.+..=.+...+..|..++++++..- |.+ ..|...
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALd-v-d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALD-V-DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-c-ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHH
Confidence 445565555555666667777777777665 1 12223334444444456666777777777766643 222 234444
Q ss_pred HHHHHhCCChhHHHHHhccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhH
Q 007818 121 IHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 198 (588)
+..--..|++..|.++|++- -+|+..+|++.|..-.+.+.++.|..++++..-. .|+..+|..-.+.--+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 44444566777777777662 3566677777777777777777777777766543 4666666666666666777777
Q ss_pred HHHHHHHHHHh-CC-CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCHHHHHHH---
Q 007818 199 GREIHWYISES-GL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNK-----TVVSCTTMIVGYAKFGFLDIARKI--- 268 (588)
Q Consensus 199 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~--- 268 (588)
+..+|+...+. |- ..+...+.+....-.++..++.|.-+|+-..+. ....|..+..---+-|+....++.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 77777666554 21 112334455555555566666776666554332 122233333222233333222222
Q ss_pred -----hhhCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H---HHHH-HH-HH---cccCChhH
Q 007818 269 -----FDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV--T---TVHC-LS-AC---SQLGALDD 330 (588)
Q Consensus 269 -----~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~---~~~l-~~-~~---~~~~~~~~ 330 (588)
++..... |-.+|-..+..--..|+.+...++|+..+.. ++|-.. . |..| |+ +| ....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1222222 3334555666666678888888888887765 455221 1 1111 11 11 35677788
Q ss_pred HHHHHHHHHHhCCCCcchHHHHH----HHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTAL----VDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
+.++++...+. ++....++.-+ .....++.++..|.+++..... |...+|..-|..-.+.++++.+..+|+..
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888777773 34444444433 3334577888888888887764 55667777777778888889999999888
Q ss_pred HHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhH
Q 007818 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVV 483 (588)
Q Consensus 405 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 483 (588)
++-+ +-+..+|......-...|+.+.|..+|+-+............|...|+.-...|.+++|..+++++- ..+...+
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 8864 4466778777777778889999999998888753333334566777777778889999999988873 3345556
Q ss_pred HHHHHHHHH-----hhC-----------CHHHHHHHHHHHhcc----CCCC--CchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 484 WGALFFACR-----LHG-----------NVSIGERAAMKLLEL----DPQD--SGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 484 ~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
|.++..--. +.+ +...|..+|+++... .|.. ...+..+...-...|.-.+...+-+.|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 666554322 233 566788888888643 3321 223444445555566655555555544
Q ss_pred H---hcC--CccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHh
Q 007818 542 E---ERG--VEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586 (588)
Q Consensus 542 ~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (588)
- ++. +..+.| .......+.-+++.+.+-|...++.+.-..|..
T Consensus 623 Pk~vKKrr~~~~edG--~~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~ 670 (677)
T KOG1915|consen 623 PKKVKKRRKIQREDG--DTEYEEYFDYIFPEDASATKNLKILEAAKKWKK 670 (677)
T ss_pred cHHHHhhhhhhcccC--chhHHHHHHhcCccccccCcchHHHHHHHHHHH
Confidence 2 111 222222 111223344455655455555567666666654
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=6.9e-12 Score=118.62 Aligned_cols=482 Identities=11% Similarity=0.001 Sum_probs=371.8
Q ss_pred CChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 007818 26 KNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102 (588)
Q Consensus 26 g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (588)
.+.++|+.++.+.. +.+...|. +|.+..-|+.|..++....+ .++.+..+|.+-...=-++|+++.+.+++
T Consensus 390 E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 34666777776643 33444444 45556678899999999887 36677778766666666888888888887
Q ss_pred HHHH----HhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC----C--CCCcccHHHHHHHHHhCCChhHHHHHHHHhH
Q 007818 103 GHVL----KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES----C--VRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 172 (588)
++-+ ..|+..+...|..-...|-+.|..-.+..+.... . ..--.+|+.-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 7654 4577888888888888888888877777766652 1 1233578888899999999999999999887
Q ss_pred HCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchH
Q 007818 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK---TVVSC 249 (588)
Q Consensus 173 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 249 (588)
+- .+-+...|......--..|..+....+++.++..-. -....+.....-+...|+...|..++....+. +...|
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 65 244555666666666778999999999999998843 36667777788888899999999999888543 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHcccC
Q 007818 250 TTMIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA-VTTVHCLSACSQLG 326 (588)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~ 326 (588)
-..+........++.|..+|....... ...|.--+...-..+..++|.+++++..+. -|+. ..|..+-..+.+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 888888899999999999999886643 344777677777788999999999998885 4554 45666677788888
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007818 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSE 403 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 403 (588)
+++.|...|..-.+. .+..+..|-.|...--+.|++-.|..++++..- .+...|...++.-.+.|+.+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877554433 344667888888888899999999999998763 3677899999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-H
Q 007818 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-V 481 (588)
Q Consensus 404 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~ 481 (588)
.++. ++.+...|..-|....+.++-..+...+++- .-|+.+.-.+...+.....+++|++.|.+.. ..|| .
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 8876 4666678888888887777755555554444 3466677788888999999999999999873 4554 6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
.+|.-+...+..+|.-+.-..++.+...-+|.+...|.....--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 68888888899999999999999999999999888888776543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.9e-12 Score=127.13 Aligned_cols=494 Identities=13% Similarity=0.067 Sum_probs=324.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (588)
.-.....+...|+.++|.+++.++.+. .+.+...|.+|...|-..|+.+++...+-.+.-.. |.|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 334444555569999999999999882 34456789999999999999999988776555433 556789999999999
Q ss_pred hCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH----HHHHHHhccCChhH
Q 007818 126 SCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI----GMVSACAQLEDLNL 198 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~ 198 (588)
+.|.++.|.-.|.+. .+++...+---...|-+.|+...|.+.|.++.....+.|..-+. .+++.+...++.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999884 44454444555678889999999999999998864322322233 34556677787899
Q ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC----CC----------------------cchHH-
Q 007818 199 GREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN----KT----------------------VVSCT- 250 (588)
Q Consensus 199 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~- 250 (588)
|.+.++..... +-..+...++.++..+.+...++.|......... +| ..++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99988888774 2234667788999999999999999887766633 11 11111
Q ss_pred ---HHHHHHHhcCCHHHHHHHhhhCCCCC------cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 251 ---TMIVGYAKFGFLDIARKIFDDLPEKY------VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 251 ---~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 321 (588)
.+.-++......+....+...+...+ +..|..+..+|...|++..|+.+|..+.....--+...|..+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 22233344444444444444333333 233888899999999999999999999887555567788889999
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcch------------HHHHHHHHH
Q 007818 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT------------YTAIIGGLA 389 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~l~~~~~ 389 (588)
+...|.++.|...++.+.... +-+...--.|...+.+.|++++|.+.+..+..||... --.....+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998764 2244555678888999999999999999977554210 111112223
Q ss_pred hcCChHHHHH----------------------------------------HHHHHHHCC---------------------
Q 007818 390 LHGKALDAIS----------------------------------------YFSEMIGVG--------------------- 408 (588)
Q Consensus 390 ~~~~~~~a~~----------------------------------------~~~~~~~~~--------------------- 408 (588)
+.|+.++=+. ....|...+
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 3333222111 111111110
Q ss_pred --CCCCH--HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH----HHHHHHHHHHhcCChHHHHHHHHhCCC---
Q 007818 409 --LMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK----HYSCMVDLLGRSGLLEEAEQLIRSMPM--- 477 (588)
Q Consensus 409 --~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 477 (588)
+..+. ..+..++.++++.+.+.+|..+...+....-+..+.. .-...+.+....+++..|.+.++.+..
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 11111 1345677889999999999999999887644444433 234455666788999999999988731
Q ss_pred ---CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 478 ---AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-SGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 478 ---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.| ....|+..++...+.++-..-.+.+..+....|++ +......+..+...|.|..|+..+-++..
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 23 23345544444444444444444444444444444 33333334444455555555555555443
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1e-16 Score=148.26 Aligned_cols=257 Identities=16% Similarity=0.106 Sum_probs=114.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV-HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
+...+...|++++|+++++.......+|+...|. .+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 4566778888999999986655443245444444 3444566788899999999888877544 55667777777 6889
Q ss_pred ChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++++|.++++..-+ +++..+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998877643 566777888889999999999999999977543 345667888889999999999999999999
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
+.+. .|.+......++..+...|+.+++.++++... .+.++..+..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9984 34457888899999999999999888887763 2345667888899999999999999999999999999999
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+..++.++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988754
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2e-13 Score=124.49 Aligned_cols=387 Identities=14% Similarity=0.042 Sum_probs=245.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 007818 150 SLINGFVRSGFPREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228 (588)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (588)
....-+.++|++++|++.|.+.++. .|| +..|.....+|...|+|+++.+.-...++.... -...+..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 3445567778888888888887775 566 556667777777788888777766666655221 123444445566666
Q ss_pred CChhHHHHHHHhc---CCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC--------------------------ccc
Q 007818 229 GKLESAEEIFDSM---VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--------------------------VVP 279 (588)
Q Consensus 229 g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------------~~~ 279 (588)
|++++|+.=+.-. ..-+..+...++.-..+.--...+.+-+..-..+. ...
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 7766664321111 00000000111111111111111222222100000 001
Q ss_pred HHHHHHHHHh--c---CChHHHHHHHHHHHHCC-CCCCH-----------HHHHHHHHHHcccCChhHHHHHHHHHHHhC
Q 007818 280 WNAIIGGYVQ--A---KRSKEALALFHEMQATG-IKPDA-----------VTTVHCLSACSQLGALDDGIWIHRFIEKEN 342 (588)
Q Consensus 280 ~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~-~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 342 (588)
...+..++.. . ..+..|...+.+-.... ..++. .+...-..-+.-.|+.-.+..-|+..++..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 1112211111 1 12333333332221110 11111 111111122345678888888888888876
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
..++. .|--+..+|....+.++-...|..... .|+.+|..-.+.+.-.+++++|..-|++.+... +-+...|..+
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 54433 366677789999999999999988763 578899999999999999999999999998853 3344578778
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------H-hHHHHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-------V-VVWGALFFA 490 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-------~-~~~~~l~~~ 490 (588)
.-+..+.+.++++...|++..+ .+|-.+..|+.....+..++++++|.+.|+.. ..+|+ . ...+..+-.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 7788899999999999999998 66777899999999999999999999999976 34443 1 112222222
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
..-.+++..|+.+++++++++|....++..|+....+.|+.++|+++|++...
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23348999999999999999999999999999999999999999999998754
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=4e-14 Score=137.87 Aligned_cols=529 Identities=12% Similarity=0.029 Sum_probs=293.9
Q ss_pred ccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC
Q 007818 3 ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ----NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78 (588)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 78 (588)
..|+.||..+|..||.-|+ ..|+.+.|- +|.-|+ +-+...++.++.+..+.++.+.+. .|.
T Consensus 18 ~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~ 82 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPL 82 (1088)
T ss_pred HhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCc
Confidence 4599999999999999999 999999999 887665 223334555555555555444333 244
Q ss_pred cccHHHHHHHHHccCChhh---HHHHHHHHHH----hcC-----------------CCChh----------HHHHHHHHH
Q 007818 79 NFTYPLLFKVCASLGLRFL---GYEIFGHVLK----LGF-----------------DVDMY----------VHNAVIHVF 124 (588)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~----------~~~~l~~~~ 124 (588)
+.||..+..+|...||+.. +++.++.+.. .|+ -||.. .+..++..+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554332 2221111111 111 01100 000111111
Q ss_pred ---------------Hh-----CCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH
Q 007818 125 ---------------VS-----CGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183 (588)
Q Consensus 125 ---------------~~-----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 183 (588)
.+ ...+++-..+...... ++..+|..++..-..+|+.+.|..++.+|++.|++.+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11 1112222222222333 78889999999999999999999999999999999999888
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHH------------------------HHHHH
Q 007818 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA------------------------EEIFD 239 (588)
Q Consensus 184 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------------------------~~~~~ 239 (588)
..++-+ .++...+..++.-|...|+.|+..|+...+..+.+.|....+ .+.++
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 888766 788888999999999999999999887766665553322111 11110
Q ss_pred hc---------CC-------CCcch-------------------------------------HHHHHHHHHh--------
Q 007818 240 SM---------VN-------KTVVS-------------------------------------CTTMIVGYAK-------- 258 (588)
Q Consensus 240 ~~---------~~-------~~~~~-------------------------------------~~~ll~~~~~-------- 258 (588)
.- ++ ....+ +..++.-|.+
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 00 00 00011 1111111100
Q ss_pred --------------cCCHHHHHHHhhhCCCC-------------------------------------------------
Q 007818 259 --------------FGFLDIARKIFDDLPEK------------------------------------------------- 275 (588)
Q Consensus 259 --------------~~~~~~a~~~~~~~~~~------------------------------------------------- 275 (588)
.....+..++.....+.
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l 479 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKIL 479 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111111000
Q ss_pred --------Cc--ccHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 276 --------YV--VPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 276 --------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
.. -.|..||+-+......+.|..+..+..... +..|..-+..+.....+.+....+..++..+.+.-.
T Consensus 480 ~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 480 CDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 00 005667777777788888888888775432 344566677888888888888888888888876432
Q ss_pred C-Cc-chHHHHHHHHhHhcCChhHHHHHhccCCC-------C---------Ccc-hHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 344 N-LN-VVLGTALVDMYAKCGNIAKALQVFHEMPE-------R---------NSL-TYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 344 ~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~---------~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
. |+ ..++-.++......|+.+...++++-+.. | +.. ....-...+.+.+-+..+.+.+-++
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrl 639 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRL 639 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHH
Confidence 2 21 22233445555666776666665554321 1 000 1111112222333333444444444
Q ss_pred HHCCCCCCHHH---HHHHHHHhccCCchHHHHHHHHHhh-----------hhcCCCC---------ChHHHHHHHHHHHh
Q 007818 405 IGVGLMPDEIT---FLGILSACCHGGLVDEGRKYFAQMS-----------SIFRLSP---------KLKHYSCMVDLLGR 461 (588)
Q Consensus 405 ~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~---------~~~~~~~l~~~~~~ 461 (588)
...+-.-+... +..=+..|.+.|+..+|..+.+.=- ....+.| +......|+..|.+
T Consensus 640 v~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~ 719 (1088)
T KOG4318|consen 640 VYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLE 719 (1088)
T ss_pred HHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHh
Confidence 44322222221 1111223555565555554443210 0000000 01112237778999
Q ss_pred cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhC---CHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHccCChHHHH
Q 007818 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG---NVSIGERAAMKLLELDPQDSG---IYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 535 (588)
.|+++.|..+|.+++..|...+...++..+.+.. +..++...-+++.+..|..+. .+.-.+....+....+.|.
T Consensus 720 ~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAk 799 (1088)
T KOG4318|consen 720 EGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAK 799 (1088)
T ss_pred hhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHH
Confidence 9999999999999987788888877777776544 556666666777666654333 3444455555666666888
Q ss_pred HHHHHHHhcCCccC
Q 007818 536 KVRKMMEERGVEKT 549 (588)
Q Consensus 536 ~~~~~~~~~~~~~~ 549 (588)
+.+.+..+.....+
T Consensus 800 k~f~r~eeq~~v~t 813 (1088)
T KOG4318|consen 800 KCFERLEEQLTVST 813 (1088)
T ss_pred HHHHHHHHccCCCc
Confidence 99999887755443
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-12 Score=118.47 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=250.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC-cccHHHHHHHHH
Q 007818 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWNAIIGGYV 288 (588)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~ 288 (588)
+...|...+......+.+.|..+.|.+.|......-+..|.+.+....-.-+.+.+..+...+...+ ...--.+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 4444655555566667788999999999999888777777777665554555555444443333221 111122345566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC--CcchHHHHHHHHhHhcCChhH-
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN--LNVVLGTALVDMYAKCGNIAK- 365 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~- 365 (588)
.....+++..-.......|++.+...-+....+.....++++|+.+|+.+.+..+- -|..+|..++-.--...++.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 66688888888888888887766666666666677889999999999999988432 245666666533322222221
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 366 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
|..+ -.+.+--+.|.-++.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|++-++.+.+ --
T Consensus 319 A~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 319 AQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 2222 22233356677778888999999999999999999864 33455788888899999999999999999997 44
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
|-|-..|..|+++|.-.+.+.=|+-+|+++ ..+| |...|..++..|.+.++.++|++.|.+++..+--+..++..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 667899999999999999999999999988 4555 88999999999999999999999999999988878899999999
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 007818 524 MYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~ 543 (588)
+|.+.++.++|..++++..+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998865
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=4.1e-13 Score=121.26 Aligned_cols=430 Identities=13% Similarity=0.060 Sum_probs=271.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCC----Cc-ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc--c----hHH
Q 007818 116 VHNAVIHVFVSCGDLGLACNVFDESCVR----NL-VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE--V----TMI 184 (588)
Q Consensus 116 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~----~~~ 184 (588)
+...|..-|..+..+.+|+..++-+.+. |. ..--.+...+.+.+.+.+|++.|+..... .|+. . ..+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~ 280 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHh
Confidence 3444455566666677777766654321 11 11122344566777888888888766553 2322 2 233
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC--------------C--cch
Q 007818 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--------------T--VVS 248 (588)
Q Consensus 185 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~--~~~ 248 (588)
.+.-.+.+.|.++.|...|+...+. .|+..+-..|+-++..-|+.++..+.|.+|..- | ...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 3334567788888888888887776 456555555666677778888888888777320 1 111
Q ss_pred HHH-----HHHHHHhcC--CHHHHHHHhhhCC----CCCccc---HH------------------HHHHHHHhcCChHHH
Q 007818 249 CTT-----MIVGYAKFG--FLDIARKIFDDLP----EKYVVP---WN------------------AIIGGYVQAKRSKEA 296 (588)
Q Consensus 249 ~~~-----ll~~~~~~~--~~~~a~~~~~~~~----~~~~~~---~~------------------~l~~~~~~~~~~~~a 296 (588)
.+. .+.-.-+.+ +.++++-.--.+. .++... |. .-..-+.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 111 111121111 1222222211222 222111 11 112347789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--cccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 297 LALFHEMQATGIKPDAVTTVHCLSAC--SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 297 ~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+++++-+.+..-+.-...-+.+-..+ ....++..|.++-+...... .-+....+.-.......|++++|.+.|++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 99999887764333332233222222 22345666666665554332 1122222222334456799999999999999
Q ss_pred CCCcchHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHH
Q 007818 375 ERNSLTYTAIIG---GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451 (588)
Q Consensus 375 ~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 451 (588)
..|..+-.+|.. .+...|+.++|+..|-.+..- +..+......+...|....+..+|++++-.... -++.|+.+
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 887766555544 467789999999999887653 345667888888999999999999999988876 66778999
Q ss_pred HHHHHHHHHhcCChHHHHHHH-HhCCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLI-RSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
...|.+.|-+.|+..+|.+.. +....-| +..+..-+...|....-.++|+.+|+++.-..|+....-..++.++.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 999999999999999999875 4444223 55555555556667777899999999999999954444444566677899
Q ss_pred ChHHHHHHHHHHHhcCCccCCceeE
Q 007818 530 MWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
+|++|.++++....+ .+.+..|..
T Consensus 675 nyqka~d~yk~~hrk-fpedldclk 698 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLK 698 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHH
Confidence 999999999999765 444544443
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.1e-11 Score=111.09 Aligned_cols=446 Identities=12% Similarity=0.051 Sum_probs=319.6
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChh
Q 007818 86 FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 162 (588)
.+.=...+++..|.++|++++... ..+...|...+.+-.++..+..|..++++.. +.-...|...+..--..|++.
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 333446778899999999999865 4677788888888889999999999999832 223335655666666789999
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
.|.++|++-.+- .|+...|.+.++.-.+-+.++.|..+++..+-. .|+...|-..++.-.++|+...|..+|....
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999998765 899999999999999999999999999988764 5889999999999999999999999998875
Q ss_pred CC------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc-----cHHHHHHHHHhcCChH---HHHHH-----HHHH
Q 007818 243 NK------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV-----PWNAIIGGYVQAKRSK---EALAL-----FHEM 303 (588)
Q Consensus 243 ~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~---~a~~~-----~~~~ 303 (588)
+. +...+.+...--.++..++.|.-+|+-..+.-+. .|..+...--+-|+.. +++-- |+.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 42 2234444444445677788888887765442211 1333333333445443 33321 3334
Q ss_pred HHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc-hHHHHHHH--------HhHhcCChhHHHHHhccCC
Q 007818 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGTALVD--------MYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 304 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~--------~~~~~~~~~~A~~~~~~~~ 374 (588)
+..+ +-|-.++--.+..-...|+.+...++++.....-++... ..+...|. .-....+.+.+.++|+...
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4432 446667777777777789999999999888765322211 11222221 1235678888888887655
Q ss_pred C---CCcchH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC
Q 007818 375 E---RNSLTY----TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 375 ~---~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (588)
+ ....|| ..-..-..++.+...|.+++...+ |.-|-..+|...|..-.+.+.++.+..++++..+ --|.
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe 469 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPE 469 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChH
Confidence 3 233343 333444557888999999988766 4588888999989888889999999999999986 3345
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
+..+|...+..-...|+.+.|..+|+-+..+|. ...|...+.--...|.+++|..+++++++..+. ..+|...+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~kvWisFA~ 548 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VKVWISFAK 548 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-chHHHhHHH
Confidence 677888888888889999999999998766664 334555555556789999999999999998884 447777666
Q ss_pred HHH-----ccC-----------ChHHHHHHHHHHH
Q 007818 524 MYR-----DSN-----------MWEEAGKVRKMME 542 (588)
Q Consensus 524 ~~~-----~~g-----------~~~~A~~~~~~~~ 542 (588)
.-. +.| ....|..+|+++.
T Consensus 549 fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 549 FEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 544 344 5677888888774
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.1e-11 Score=113.77 Aligned_cols=482 Identities=11% Similarity=-0.035 Sum_probs=274.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHH
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (588)
.+..-+..+++-+..+.++..|.-+-+++.. +.-|+....-+.+++.-.|+.+.|..++..-.-. ..|.......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~---l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAG---LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 3455567777777778888888888888765 3344444555788888888888888777665433 2566667777
Q ss_pred HHHHHhCCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 121 IHVFVSCGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
..++.+..+++.|..++..... .+...|..--. ...-..+.+. ++.. +......+-.-...|....+.++|
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 7778888888888888874311 01111110000 0000001111 0000 000111111111223334455555
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhc-CChhHHHHHHHhcC-----CCCcchHHHHHHHHHhcCCHHHHHHHh--hh
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKC-GKLESAEEIFDSMV-----NKTVVSCTTMIVGYAKFGFLDIARKIF--DD 271 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~--~~ 271 (588)
...|.+.... |...+..+...-... -..++-..+|..+. ..+......+.........-+.....- ..
T Consensus 161 r~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 161 RDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 5555554443 222222221111100 00111122222110 001100000000000000000000000 00
Q ss_pred C--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH
Q 007818 272 L--PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349 (588)
Q Consensus 272 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (588)
+ .+.++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+=..+.+.- +....+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 0 01122223334445566777888888888877753 4555555555556666666655555555555542 335566
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
|-++.--|...|+..+|.+.|.+...-| ...|.....+|+-.|..++|+..+...-+. ++-....+..+.--|.+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHh
Confidence 7777777878888888888887766433 357888888888888888888888776654 222333344455557778
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHhHHHHHHHHHHhhCCH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAA-DVVVWGALFFACRLHGNV 497 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~~~~ 497 (588)
++.+.|.++|..+.. -.|.|+...+.+.-.....+.+.+|..+|+... .++ -.++++.++.+|++.+.+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888888888888875 334456777777777777788888888887652 112 345677888888888888
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++|+..+++++.+.|.++.++..++.+|...|+++.|.+.|.+....
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877543
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.7e-12 Score=125.66 Aligned_cols=247 Identities=10% Similarity=0.000 Sum_probs=157.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChh
Q 007818 287 YVQAKRSKEALALFHEMQATGIKPDAVTTV--HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364 (588)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (588)
..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+..+ -++.....+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHH
Confidence 35566666677766666653 34433222 224455666677777777766666542 24555666667777777777
Q ss_pred HHHHHhccCCCCCc-----------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 365 KALQVFHEMPERNS-----------LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 365 ~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
+|.+++..+.+... .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77766666653211 12333333333444555566666665433 2456667777788888888888888
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
+++++..+. +|+.... ++.+....++.+++.+..++.. ..| |+.....+...|...+++++|...|+++++..
T Consensus 284 ~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 284 QIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888877753 4444322 2233335578888888887763 335 45556677777888888888888888888888
Q ss_pred CCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|+ ...+..++.++.+.|+.++|.+++++...
T Consensus 359 P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 85 45566788888888888888888887754
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=7.7e-12 Score=121.15 Aligned_cols=248 Identities=13% Similarity=-0.039 Sum_probs=174.2
Q ss_pred HhcCCHHHHHHHhhhCCCCCccc--H--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHH
Q 007818 257 AKFGFLDIARKIFDDLPEKYVVP--W--NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332 (588)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 332 (588)
.+.|+++.|...+.++.+.++.. . ......+...|+++.|...++.+.+.. +-+...+..+...+.+.|+++.+.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 44444444544444443322222 1 122445666677777777777776653 224455556666677777777777
Q ss_pred HHHHHHHHhCCCCcc-------hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHH
Q 007818 333 WIHRFIEKENFNLNV-------VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFS 402 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 402 (588)
.++..+.+.+..++. ..|..++.......+.+...++++.+++ .++.....+...+...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777666543222 1223334334445566777778887763 477788889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 007818 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADV 481 (588)
Q Consensus 403 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 481 (588)
+..+. .|++... ++.+....++.+++.+..+...+ ..+-|+..+..+...+.+.|++++|.+.|+.. ...|+.
T Consensus 288 ~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 98884 5565322 23344466999999999999987 55666778889999999999999999999987 467999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
..+..+...+...|+.++|..++++.+.+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998899999999999999999999998754
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=1.2e-09 Score=103.57 Aligned_cols=481 Identities=13% Similarity=0.104 Sum_probs=274.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 007818 45 SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124 (588)
Q Consensus 45 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (588)
.|-..++.+.++|+.......|+..+....+.....+|...+.-....+-++-+..++++.++. ++..-+..+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 3444445555555555555555555543333333445555555555555555555555555542 222244445555
Q ss_pred HhCCChhHHHHHhcc--------------------------------------------CCC----CCcccHHHHHHHHH
Q 007818 125 VSCGDLGLACNVFDE--------------------------------------------SCV----RNLVSWNSLINGFV 156 (588)
Q Consensus 125 ~~~~~~~~A~~~~~~--------------------------------------------~~~----~~~~~~~~l~~~~~ 156 (588)
+..+++++|.+.+.. +.. .-...|.+|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 555555555544432 111 11235888888888
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCC----------------------hhHHHHHHHHHHHhCC---
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED----------------------LNLGREIHWYISESGL--- 211 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~--- 211 (588)
+.|.+++|.++|++.... ..+..-|..+..+|+.... ++-...-++.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 899999999888887664 3344455555555543211 1122222333222210
Q ss_pred --------CCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---C------CcchHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 007818 212 --------TLTVPLANALMDMYVKCGKLESAEEIFDSMVN---K------TVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274 (588)
Q Consensus 212 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (588)
+.+...|..- .-...|+..+-...+.+..+ | -...|..+...|-..|+.+.|..+|+...+
T Consensus 338 NsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 1111112111 11224555555556655522 1 124577888888999999999999998877
Q ss_pred CCccc-------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CH------HHHHHHHHHHcccCChhH
Q 007818 275 KYVVP-------WNAIIGGYVQAKRSKEALALFHEMQATGIKP-----------DA------VTTVHCLSACSQLGALDD 330 (588)
Q Consensus 275 ~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~------~~~~~l~~~~~~~~~~~~ 330 (588)
-+..+ |..-...-.++.+++.|+++.+......-.| .. ..|...+..-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 55444 4444455556778888888887765421111 11 123333333345566777
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC----CCc-chHHHHHHHHHh---cCChHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE----RNS-LTYTAIIGGLAL---HGKALDAISYFS 402 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~a~~~~~ 402 (588)
...+++.+.+..+.. +.+.-.....+-...-++++.++|++-.. |++ ..|+.-+..+.+ ....+.|..+|+
T Consensus 496 tk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 778888887776542 33222333344556678899999988663 333 356665555543 345899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH--hccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 007818 403 EMIGVGLMPDEITFLGILSA--CCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M 477 (588)
Q Consensus 403 ~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 477 (588)
+.++ |++|...-+..++.+ -.+-|-...|..+++++.. ++++. ...|+..|.--...=-.....++|+++. .
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 9998 677766533333322 3356888889999999876 55554 4567766654333222333445555442 1
Q ss_pred CCCHhHH---HHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChHHHHHH
Q 007818 478 AADVVVW---GALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 478 ~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
=|+...- ......-.+.|..++|..++...-++-|+ ++..|..+-..-.+.|+-+--.++
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 2443332 22333345788999999999888876654 677788888888889985544444
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=6.8e-12 Score=122.28 Aligned_cols=292 Identities=13% Similarity=0.037 Sum_probs=173.4
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcch-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVT-MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 235 (588)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 343332 23334555566777777777766655432222223333455556666666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
..++.+.+.++ .++..+..+...+...|+++.|.+.+..+.+.++.+ ...+
T Consensus 174 ~~l~~l~~~~P----------------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~ 224 (409)
T TIGR00540 174 HGVDKLLEMAP----------------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEF 224 (409)
T ss_pred HHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHH
Confidence 66555533221 122224445555666666666666666666654322 1111
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHG 392 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 392 (588)
..+-. ..+..++..-......+...+.++..++ .++..+..++..+...|
T Consensus 225 ~~l~~---------------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 225 ADLEQ---------------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 11000 0001111111112223444555555553 36677777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh--HHHHHHHHHHHhcCChHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEIT--F-LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL--KHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 467 (588)
+.++|.+++++..+. .|+... + ..........++.+.+.+.++...+. .+.++ ....++...+.+.|++++
T Consensus 278 ~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 278 DHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred ChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHH
Confidence 888888888888875 344432 1 11222233457788888888888763 34445 667788899999999999
Q ss_pred HHHHHHh---CCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 468 AEQLIRS---MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 468 A~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999994 245788888888888899999999999999988653
No 46
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=3.7e-11 Score=105.40 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=139.4
Q ss_pred ChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 362 NIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 362 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
...-|.+.|+-.-+ ..+..-.++.+.+.-..++++++-.+.....-- ..|...-..+.++.+..|.+.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 34455555554432 123344566677777778888888888777653 334444445778888999999999999
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHH-HHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA-CRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
-.+... .++.+..--..|.++|.++|.++-|.+++-.+..+.+..++..++.. |.+.+++--|.+.|..+..++| +|
T Consensus 417 ~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~p 494 (557)
T KOG3785|consen 417 IRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TP 494 (557)
T ss_pred hhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Cc
Confidence 888653 33333333446778999999999999999888655566666665554 8899999999999999988998 45
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHhh
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (588)
..|. |+...-..+|..+......|-|.....++.+ +.++..|.+++....++..|.++
T Consensus 495 EnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvh-----llr~~~nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 495 ENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVH-----LLRMKPNSQCEFMIKVVRKWAET 552 (557)
T ss_pred cccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHH-----HHHhCCCchHHHHHHHHHHHHHh
Confidence 5553 3444445566666554444444333222222 34455677888888888887765
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.1e-12 Score=124.78 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=117.6
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE-ITFLGILSA 422 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 422 (588)
+.+|.++..+|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. .|.. ..|-.+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhh
Confidence 3444455555555555555555555544322 234444444455555566666666555432 2222 245555566
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 499 (588)
|.++++++.|+-.|+++.+ +.|. ......+...+.+.|+.++|+++++++. .+| ++..--.-+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 6677777777777777664 2333 4445556666667777777777777662 333 44444445555666777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
|.+.++++.++-|++..++..++.+|.+.|+.+.|+.-|.-+.+.+.
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 88888888888888777888888888888888888777777665543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.1e-12 Score=124.59 Aligned_cols=249 Identities=13% Similarity=0.050 Sum_probs=191.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC--CCcchHHHHHHHHhHhcCChhHHHH
Q 007818 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF--NLNVVLGTALVDMYAKCGNIAKALQ 368 (588)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 368 (588)
-+..+|+..|...... +.-+.+....+..+|...++++++.++|+.+.+... .-+..+|.+.+--+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885554 344556677788899999999999999998877642 2255667776654432211211112
Q ss_pred HhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC
Q 007818 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (588)
-+-...+..+.+|-++...|..+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..... .+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cch
Confidence 222233457889999999999999999999999999884 55 5678888888888899999999999998852 122
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+-..|..++..|.++++++.|+-.|+++ .+.|. ......+...+.+.|+.++|++++++++.++|.|+-.-...+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 3455667888899999999999999887 45664 555566666788899999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhc
Q 007818 526 RDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (588)
...+++++|+..++++.+-
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999764
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.7e-11 Score=107.25 Aligned_cols=356 Identities=12% Similarity=0.065 Sum_probs=185.8
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH--HHHHH
Q 007818 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI--GMVSA 189 (588)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~ 189 (588)
.|...+-..-..+.+.|....|+..|.+....-+..|.+.+....-..+.+.+ ..... |.+.|...+. .+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHHH
Confidence 34333333334455567777888877775443333343333322222222222 22221 2222222222 23345
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCc------chHHHHHHHHHhcCCHH
Q 007818 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV------VSCTTMIVGYAKFGFLD 263 (588)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~ 263 (588)
+......+++.+-.+...+.|++.+...-+....+.-...++++|+.+|+++.+.|+ .+|+..+-.-.......
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 556667888888888888888888877777777778888899999999999877654 34444433222211111
Q ss_pred HHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
---...-.+.+-.+.|...+..-|+-.++.++|...|+...+ .+.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-----------------------------------LNp 361 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-----------------------------------LNP 361 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----------------------------------cCc
Confidence 111111122222333444444444444555555555555444 331
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
. ....|+.+.+-|...++...|.+-|+...+ .|-..|-.|.++|...+.+.=|+-.|++..+.. +-|+..|..+.
T Consensus 362 ~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG 439 (559)
T KOG1155|consen 362 K-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALG 439 (559)
T ss_pred c-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 1 334455555556666666666666655543 344555566666666666666666666665542 33445666666
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-HhHHHHHHHHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAAD-VVVWGALFFAC 491 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~ 491 (588)
.+|.+.++.++|+..|.+.... -..+...+..|++.|-+.++..+|...|++.. ..|. .....-+..-+
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 6666666666666666666552 22244555666666666666666666555431 1121 11112233334
Q ss_pred HhhCCHHHHHHHHHHHhccC
Q 007818 492 RLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~ 511 (588)
.+.+++++|.....+...-+
T Consensus 518 ~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HhhcchHHHHHHHHHHhcCC
Confidence 55666666666555555443
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.2e-11 Score=118.70 Aligned_cols=253 Identities=11% Similarity=-0.031 Sum_probs=158.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCC
Q 007818 285 GGYVQAKRSKEALALFHEMQATGIKPDAV--TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (588)
......|+.+.|.+.+.+..+. .|+.. .-......+...|+++.|...++.+.+..+ -++.+...+...+...|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhh
Confidence 3444555666666666555443 23321 222234455556666666666666655542 234455566666666666
Q ss_pred hhHHHHHhccCCCC---CcchHH----HHHHHHHhcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHhccCCchHHH
Q 007818 363 IAKALQVFHEMPER---NSLTYT----AIIGGLALHGKALDAISYFSEMIGVGL---MPDEITFLGILSACCHGGLVDEG 432 (588)
Q Consensus 363 ~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a 432 (588)
+++|.+.+..+.+. +...+. .........+..+++...+..+.+... +.+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 66666666655532 222221 111111222333333445555544321 23778888899999999999999
Q ss_pred HHHHHHhhhhcCCCCChHH--HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H--hHHHHHHHHHHhhCCHHHHHHHHH-
Q 007818 433 RKYFAQMSSIFRLSPKLKH--YSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-V--VVWGALFFACRLHGNVSIGERAAM- 505 (588)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~- 505 (588)
.+++++..+. .+++... .....-.....++.+.+.+.+++. ...|+ + ....++...+.+.|++++|.+.++
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999999984 2233221 111122223457888888888876 34454 3 566788889999999999999999
Q ss_pred -HHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 506 -KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 506 -~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+++..|+ +..+.+++.++.+.|+.++|.+++++...
T Consensus 361 a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 361 VAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57778885 55577999999999999999999998754
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.2e-10 Score=104.99 Aligned_cols=412 Identities=13% Similarity=0.005 Sum_probs=254.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCC-hhHHHHHHHH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD-MYVHNAVIHV 123 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 123 (588)
+-...+-|.++|++++|++.|.+.+. ..|+ +..|.....+|...|+++++.+.-...++.. |+ +..+.....+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 44556778999999999999999988 7788 7788899999999999999999888888744 54 3466666777
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH--------HHhHH-CC--CCCCcchHHHHHHHHhc
Q 007818 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF--------RDMQL-ER--VEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 124 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------~~m~~-~~--~~p~~~~~~~ll~~~~~ 192 (588)
+-..|++++|+.=+ +-..++.++....-..-+.+++ ++-.. .+ +-|+.....+....+..
T Consensus 193 ~E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 77888888876322 1122222222222112222222 22111 11 22333322222222211
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHh--c---CChhHHHHHHHhcCC-----C-----CcchHHHHHHHHH
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVK--C---GKLESAEEIFDSMVN-----K-----TVVSCTTMIVGYA 257 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~-----~-----~~~~~~~ll~~~~ 257 (588)
.- ......+.......+..++.. . ..+..|...+.+-.. . |... ..+..+
T Consensus 264 ~~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~a-- 328 (606)
T KOG0547|consen 264 DP------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEA-- 328 (606)
T ss_pred cc------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHH--
Confidence 00 000000011111111111110 0 122233222221100 0 0000 001111
Q ss_pred hcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHH
Q 007818 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337 (588)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (588)
.......+.-.|+...|..-|+..+.....++. .|..+...|....+.++..+.|..
T Consensus 329 ----------------------l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~ 385 (606)
T KOG0547|consen 329 ----------------------LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNK 385 (606)
T ss_pred ----------------------HHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHH
Confidence 111112234567788888888888876433322 277777788888888888888888
Q ss_pred HHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 414 (588)
..+.+. .++.+|..-.+++.-.+++++|..=|++...- +...|-.+.-+..+.+++++++..|++.++. ++.-+.
T Consensus 386 A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~E 463 (606)
T KOG0547|consen 386 AEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPE 463 (606)
T ss_pred HHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCch
Confidence 888763 36667777777777788999999999887753 4456666666677888999999999999886 455667
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCC------CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRL------SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGA 486 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~ 486 (588)
.|+.....+..++++++|.+.|+...+.... .+.+.+...++-.- -.+++..|.+++++. ...|. ...+..
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence 8999999999999999999999998764111 11122222232222 338999999999887 45663 557888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
+...-.++|+.++|+++|++...+..
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888899999999999999877654
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4.6e-11 Score=103.69 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=174.8
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCC--hhhHHHHHHHHHhcCChhHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLT--VPLANALMDMYVKCGKLESA 234 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A 234 (588)
.+++++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|..+.+.+.++.- +.+ ......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457788888888887642 22333445677778888888888888887776521 111 12345677778888888888
Q ss_pred HHHHHhcCCCCc---chHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc--------HHHHHHHHHhcCChHHHHHHHHHH
Q 007818 235 EEIFDSMVNKTV---VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP--------WNAIIGGYVQAKRSKEALALFHEM 303 (588)
Q Consensus 235 ~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~ 303 (588)
+.+|..+.+.+. .....++..|-...+|++|+++-+++.+.+..+ |.-+...+....+.+.|..++++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888888877433 345566777777777777777766655544433 444555555667777777777777
Q ss_pred HHCCCCCCHHH-HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcch
Q 007818 304 QATGIKPDAVT-TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLT 380 (588)
Q Consensus 304 ~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 380 (588)
.+.+ |+.+- -..+.......|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+..+.+ ++...
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 6653 33322 2234455667777777777777777776555566667777777777777777777766653 34445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---CCchHHHHHHHHHhhh
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH---GGLVDEGRKYFAQMSS 441 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 441 (588)
-..+...-....-.+.|...+.+-... +|+...+..++..... .|...+..-.++.|..
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 555555544444555555555444443 6677666666665442 2334444455555543
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=9.2e-14 Score=128.59 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=104.3
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcC
Q 007818 317 HCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHG 392 (588)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 392 (588)
.+...+.+.|++++|.++++...... .+.+...+..+.......++++.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55777889999999999996654443 3446666777788888899999999999999853 34567777776 7899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 472 (588)
++++|.++++...+. .+++..+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 466777888888999999999999999998765345677888999999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 473 RSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 473 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+++ ...| +......++..+...|+.+++..+++...+..|.++..+..++.+|...|++++|+.++++..+..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 987 4556 477788899999999999999999999999989999999999999999999999999999998754
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=2.3e-10 Score=112.28 Aligned_cols=267 Identities=12% Similarity=0.017 Sum_probs=155.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCC
Q 007818 65 LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144 (588)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 144 (588)
++-.+.. .|+.|+..||..+|.-|+..|+++.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 4455555 789999999999999999999999888 8998888888888889999998888888877665 678
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCChhhHHHHHH
Q 007818 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-SGLTLTVPLANALMD 223 (588)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 223 (588)
..+|+.|..+|...||... ++..++ ....+...+...|.......++..+.- -+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999998765 222222 111222233333333332222222110 1112222 22333
Q ss_pred HHHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhcC-CHHHHHHHhhhCCC-CCcccHHHHHHHHHhcCChHHHHHH
Q 007818 224 MYVKCGKLESAEEIFDSMVNK--TVVSCTTMIVGYAKFG-FLDIARKIFDDLPE-KYVVPWNAIIGGYVQAKRSKEALAL 299 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 299 (588)
...-.|-++.+++++..++.. +. +....++-..... .+++-..+.+...+ +++.+|..++++-..+|+.+.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 334445555555555544321 11 0101122111111 12222222222222 5555666666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
+.+|.+.|++.+.+-|..++-+ .++...++.+++-|...|+.|+..|+.-.+..+..
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 7777777666666655555544 55666666666666666666666666555544444
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=5.5e-11 Score=106.51 Aligned_cols=252 Identities=12% Similarity=0.021 Sum_probs=151.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
+.+-.+.|+.+.+-.++.+..+.--.++..............|+++.|..-+..+.+.+.. ++.+.....++|.+.|++
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccH
Confidence 3444455666666666666655422333344444455555666666666666666555432 344455666666666666
Q ss_pred hHHHHHhccCCCCC-----------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHH
Q 007818 364 AKALQVFHEMPERN-----------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432 (588)
Q Consensus 364 ~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 432 (588)
.....++..+.+.. ..+|+.+++-....+..+.-...|++.-.+ .+-++..-..++.-+.+.|+.++|
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHH
Confidence 66666666665421 235666666666666666655566655443 344555666667777777777777
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-P-MAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
.++.++..++ +..|+ ...++ ...+-++...-++..+.. . .+.++..+.++..-|.+.+.+.+|...++.+++.
T Consensus 283 ~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 283 QEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 7777777766 55554 11111 223444544444444332 1 1123366677777777788888888888877777
Q ss_pred CCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 511 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.| +...|..++.++.+.|+.++|.+..++...
T Consensus 358 ~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 358 RP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77 566777788888888888888887777653
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.2e-09 Score=101.05 Aligned_cols=452 Identities=12% Similarity=0.047 Sum_probs=241.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (588)
+=+.-+..+|++++|.+...++.. . .+-+...+..-+-++.+.+.++.|..+.+.-... ..+..-+-.-.-+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~-~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS-I-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-c-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 334556667777788877777766 2 2233345555666667777777776443321110 01111101112233356
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH-HhccCChhHHHHHHHHH
Q 007818 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA-CAQLEDLNLGREIHWYI 206 (588)
Q Consensus 128 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~ 206 (588)
+..++|+..++...+.+..+-..-...+.+.|++++|+++|+.+.+.+. ++ +..-+++ |...+..-.+ +.+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a~l~~----~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAAALQV----QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHHhhhH----HHH
Confidence 7777777777744444444555556667777777777777777765542 22 1111111 0000000000 111
Q ss_pred HHhCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 207 SESGLTL--TVPLANALMDMYVKCGKLESAEEIFDSMVN--------KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 207 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
......| +-..+......++..|++.+|++++....+ .|.. -++ + +..
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--------------eEe---i-----e~e 222 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--------------EEE---I-----EEE 222 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--------------hhh---H-----HHH
Confidence 1112222 122222334455666777777766655411 1100 000 0 000
Q ss_pred ccc-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHcccCChhH--HHHHHHH------------H
Q 007818 277 VVP-WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS---ACSQLGALDD--GIWIHRF------------I 338 (588)
Q Consensus 277 ~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~~------------~ 338 (588)
+.+ --.+.-.+...|+..+|.+++...+... .+|........+ +...-.++.. .+..++. +
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 000 2334556677899999999999888874 445433322222 2222222211 1111111 1
Q ss_pred HHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC-cchHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHH
Q 007818 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGGLA--LHGKALDAISYFSEMIGVGLMPDEIT 415 (588)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~ 415 (588)
... .......-+.++..| .+..+.+.++-...+... ...+.+++.... +...+..+.+++...-+....-...+
T Consensus 302 s~~-qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v 378 (652)
T KOG2376|consen 302 SKK-QKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVV 378 (652)
T ss_pred HHH-HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHH
Confidence 110 000111123344444 355677777777776543 344555554432 23357778888877766532222345
Q ss_pred HHHHHHHhccCCchHHHHHHHH--------HhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC
Q 007818 416 FLGILSACCHGGLVDEGRKYFA--------QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAA 479 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 479 (588)
....+......|+++.|.+++. .+.+. +.. +.+...+...+.+.++.+.|..++.+.. .++
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 5666777889999999999999 44433 333 4455667777888888777777776551 122
Q ss_pred C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 480 D-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 480 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
. ...+..++..-.++|+-++|...++++++.+|++...+..+..+|.+. +.+.|..+-+.+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 223444444446789999999999999999999999999999998876 455666655443
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=4e-10 Score=101.09 Aligned_cols=289 Identities=13% Similarity=0.060 Sum_probs=186.9
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 237 (588)
.|+|.+|.++..+-.+.+-. ....|..-.++.-+.|+.+.+-.++.++.+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665444322 22334444455555666666666666665554444555555555555556666555554
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317 (588)
Q Consensus 238 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 317 (588)
++.+.+- ...++........+|.+.|++.....++..+.+.|.--|...-
T Consensus 176 v~~ll~~----------------------------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-- 225 (400)
T COG3071 176 VDQLLEM----------------------------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-- 225 (400)
T ss_pred HHHHHHh----------------------------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--
Confidence 4443221 1122233444556666777777777777777776644332211
Q ss_pred HHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCh
Q 007818 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKA 394 (588)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 394 (588)
. ....++..+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.
T Consensus 226 ---------------~-----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 226 ---------------R-----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ---------------H-----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 0 0123344555555555555555667777663 4567777778888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (588)
++|.++.++..+++..|+ ....-.+.+.++...-++..++..+ ..+.++..+..|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999888888876666 2223345677788877777777777 4445567888899999999999999999986
Q ss_pred C-CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 475 M-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 475 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
. +..|+..+|.-+..++.+.|+...|.++.++.+.
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5 5778999999999999999999999999988874
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=5.7e-10 Score=97.02 Aligned_cols=223 Identities=9% Similarity=0.063 Sum_probs=119.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhC
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 272 (588)
+++.++|.+.|-+|.+... .+..+..+|...|-+.|..|.|+++-..+.+....++..-+.+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA----------------- 109 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA----------------- 109 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH-----------------
Confidence 3455666666666665321 1344445566666666666666666655544333333222111
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc----h
Q 007818 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV----V 348 (588)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 348 (588)
...|..-|...|-+|+|+.+|..+.+.| ..-......++..|-...++++|+.+-+.+.+.+..+.. .
T Consensus 110 -------l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 110 -------LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 2334555677777777777777776643 223345566666677777777777777666665543322 1
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.|..|...+....+.+.|..++.+..+. ++..-..+.+.+...|+++.|++.++...+.+..--+.+...+..+|..
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2334444444455555555555554432 2233334445555556666666666555554322223345555555555
Q ss_pred CCchHHHHHHHHHhhh
Q 007818 426 GGLVDEGRKYFAQMSS 441 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~ 441 (588)
.|+.++...++.++.+
T Consensus 262 lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 262 LGKPAEGLNFLRRAME 277 (389)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7e-10 Score=103.79 Aligned_cols=272 Identities=14% Similarity=0.043 Sum_probs=195.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCCh
Q 007818 252 MIVGYAKFGFLDIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328 (588)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 328 (588)
...-+-..+++.+..++++.+.+.++.. +..-|.++...|+..+-..+-.++++. .+-...+|-.+.--|...|..
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 3333444555555555555555444333 444455667777777777777777775 344566777777777777888
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
++|++.|.+....+.. -...|-.+...|.-.|..++|...|....+ .....+.-+..-|.+.++...|.+.|.+..
T Consensus 329 seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888888776655322 234577788888888888888887766543 222233335556888999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-
Q 007818 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF-----RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMA- 478 (588)
Q Consensus 406 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~- 478 (588)
... +-|+...+-+.-.....+.+.+|..+|+.....- ...-...+++.|+.+|.+.+.+++|+..++.. ...
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 742 4456677777777778899999999999887320 11124567889999999999999999999987 334
Q ss_pred CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
.+..++.+++..+...|+++.|+..|.+++.+.|+|..+-..|..+..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 478889999999999999999999999999999998777666665443
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=4.3e-11 Score=108.25 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=160.3
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677788888888888888887653 245567778888899999999999999988764 44566777888888
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
...|++++|.+.++++......+.....+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998742223345677778889999999999999998863 334 4667788888899999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888889999999999999999998887653
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=5.2e-09 Score=101.70 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=111.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 492 (588)
.|......+.+.+..++|...+.++.+ ..+.....|......+...|.+++|.+.|... ...| ++.+...+...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666778888999999988888886 44566778888888999999999999998876 4666 4678888989999
Q ss_pred hhCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 493 LHGNVSIGER--AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 493 ~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+.|+...|.. +++.+++++|.++.+|..++.++.+.|+.++|.+.|....+..
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9998888877 9999999999999999999999999999999999999997754
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.8e-11 Score=106.16 Aligned_cols=231 Identities=11% Similarity=-0.014 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAIIGG 387 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 387 (588)
|-+.-..+..+|.+.|.+.+|.+.++.-.+. .|-+.+|..|...|.+..++..|+.++.+..+ | ++.....+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3334456677788888888888888777665 45566777788888888889999888887764 3 33334456677
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...++.++|.++|+...+.. +.+......+...|.-.++++-|.++++++.+. |+ .++..|..+.-++.-.++++-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhh
Confidence 778889999999999888763 445556777777788888999999999999886 54 567788888888888899999
Q ss_pred HHHHHHhCC---CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 468 AEQLIRSMP---MAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 468 A~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
++.-|++.. ..| ....|-.+.......||+..|.+.|+-++..+|++..++++|+-.-.+.|+.++|..+++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 988888763 223 356888888888899999999999999999999999999999999999999999999999887
Q ss_pred hcCC
Q 007818 543 ERGV 546 (588)
Q Consensus 543 ~~~~ 546 (588)
....
T Consensus 457 s~~P 460 (478)
T KOG1129|consen 457 SVMP 460 (478)
T ss_pred hhCc
Confidence 6543
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=4.8e-08 Score=93.08 Aligned_cols=460 Identities=15% Similarity=0.154 Sum_probs=255.1
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHHhc-CCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhC
Q 007818 80 FTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158 (588)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (588)
.++...+..+..+|++..-...|++.+..- +.-...+|...+......|-++-+..++++-.+-++..-+..+..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 356667777788999999999999988742 2233457888888888888889999999997666677788888999999
Q ss_pred CChhHHHHHHHHhHHC------CCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCC--CC--hhhHHHHHHHHHhc
Q 007818 159 GFPREAIRLFRDMQLE------RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT--LT--VPLANALMDMYVKC 228 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~ 228 (588)
+++++|-+.+...... ..+.+...|..+....++..+.-....+ +.+...|+. +| -..+..|.+.|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999999888776432 1233444455444444443332222221 222223322 23 23577888888888
Q ss_pred CChhHHHHHHHhcCCC--CcchHHHHHHHHHhc----------------C------CHHHHHHHhhhCCCCCccc-----
Q 007818 229 GKLESAEEIFDSMVNK--TVVSCTTMIVGYAKF----------------G------FLDIARKIFDDLPEKYVVP----- 279 (588)
Q Consensus 229 g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~~~~----- 279 (588)
|.+++|.++|++..+. .+..|....+.|+.- + +++-...-|+.+....+..
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 8888888888776443 222222222222110 0 1111122222221111111
Q ss_pred ----------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 280 ----------WNAIIGGYVQAKRSKEALALFHEMQATGIKPD------AVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 280 ----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
|..-+ -...|+..+....|.+.... +.|. ...+..+...|-..|+++.|..+|++..+...
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 11111 11233444455555555443 2221 11234444555555555555555555554433
Q ss_pred CCc---chHHHHHHHHhHhcCChhHHHHHhccCCC-C--------------------CcchHHHHHHHHH----------
Q 007818 344 NLN---VVLGTALVDMYAKCGNIAKALQVFHEMPE-R--------------------NSLTYTAIIGGLA---------- 389 (588)
Q Consensus 344 ~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------------------~~~~~~~l~~~~~---------- 389 (588)
+.- ..+|.....+-.+..+++.|.++.+.... | +...|...++..-
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 221 23344444455555555555555544321 0 1112222222222
Q ss_pred ------------------------hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc---cCCchHHHHHHHHHhhh
Q 007818 390 ------------------------LHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACC---HGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 390 ------------------------~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 441 (588)
.+.-++++.++|++-+..--.|+.. .|+..+.-+. ....++.|..+|++..+
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 3334556666666554443234443 3444443333 23468899999999988
Q ss_pred hcCCCCCh--HHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 442 IFRLSPKL--KHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 442 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
+.+|.. ..|-.....=-+-|-...|..+++++...-. ...|+..+.-.+..=-...-..+|+++++.-|++.
T Consensus 579 --~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 579 --GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred --cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 666653 2233333334466888889999998753322 33455555443333334556778999999888633
Q ss_pred c--hHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 516 G--IYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 516 ~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
. .....+..-.+.|..+.|+.++....+--
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 2 23345677788999999999999886654
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.2e-08 Score=90.23 Aligned_cols=269 Identities=11% Similarity=-0.029 Sum_probs=173.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 321 (588)
|+.....+...+...|+.++|+..|+.....|+.+ .......+.+.|+.++...+...+.... .-....|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 44444444455555555555555555444333322 1112223445666666666655554421 1111112111222
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC--C-CCcchHHHHHHHHHhcCChHHHH
Q 007818 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--E-RNSLTYTAIIGGLALHGKALDAI 398 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~ 398 (588)
....++++.|+.+-++..+.+. .+...+-.-...+...|++++|.-.|+... . -+...|..|+..|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 2345566666666666555432 233444444566777888888888887765 2 36778889999999999998888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhc-cCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 399 SYFSEMIGVGLMPDEITFLGIL-SACC-HGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 399 ~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
-+-+...+. +..+..+...+. ..|. ...--++|..++++..+ +.|+ ....+.+...+...|..+.+..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 887776554 344555655552 3333 23345789999988874 3565 567778889999999999999999886
Q ss_pred -CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 476 -PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 476 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
...||......+...+...+.+++|...|..++.++|++..+..
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 56689999999999999999999999999999999998754443
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1.5e-10 Score=95.97 Aligned_cols=163 Identities=17% Similarity=0.059 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
...|.-.|...|++..|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|++... --+-+..+.|.....++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 4456677888888888888888888863 33445788888888888888888888888886 33445677888888888
Q ss_pred hcCChHHHHHHHHhCCCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 461 RSGLLEEAEQLIRSMPMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
..|++++|...|++....|. ..+|..+..+..+.|+++.|...+++.++.+|+.+.....++......|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88899999888888755553 55777887777888899999999999999999888888888998899999999988
Q ss_pred HHHHHHhcCC
Q 007818 537 VRKMMEERGV 546 (588)
Q Consensus 537 ~~~~~~~~~~ 546 (588)
++++....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8888877654
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=2.4e-07 Score=88.70 Aligned_cols=409 Identities=12% Similarity=0.042 Sum_probs=197.6
Q ss_pred hCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHH
Q 007818 126 SCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 202 (588)
..|+-++|......... .+.++|+.+.-.+....++++|++.|......+ +-|...+..+.-.-++.|+.+.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444444444443221 233445554444444455555555555444332 22233333333333444444444444
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC-----CCcchHHH------HHHHHHhcCCHHHHHHHhhh
Q 007818 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN-----KTVVSCTT------MIVGYAKFGFLDIARKIFDD 271 (588)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~------ll~~~~~~~~~~~a~~~~~~ 271 (588)
...+.+.... ....|..++.++.-.|++..|..+++...+ ++...+.. ......+.|..+.|.+.+..
T Consensus 132 r~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 4444433111 233344444444445555555554444321 11111111 11223445555555555544
Q ss_pred CCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-ccCChhHHH-HHHHHHHHhCCCCc
Q 007818 272 LPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS-QLGALDDGI-WIHRFIEKENFNLN 346 (588)
Q Consensus 272 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~ 346 (588)
.... ....-..-...+.+.++.++|..++..+... .||..-|...+..+. +..+.-++. .++....+.-. .
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~--r 286 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP--R 286 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc--c
Confidence 3321 1111223344566677777777777777775 466666655444433 233333333 44444433211 1
Q ss_pred chHHHHHHHHhHhcCCh-hHHHHHhccCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHH----CC----------CC
Q 007818 347 VVLGTALVDMYAKCGNI-AKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIG----VG----------LM 410 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~ 410 (588)
...-..+--......++ +....++....+. -+.++..+.+.|-.....+-..++.-.+.. .| -+
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 10000000001111112 2222233322222 233444444444332222211111111111 11 14
Q ss_pred CCHH--HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHH
Q 007818 411 PDEI--TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWG 485 (588)
Q Consensus 411 p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~ 485 (588)
|... ++..++..+-+.|+++.|..+++.+.. ..|+ +..|..-.+.+...|+.++|..++++.. . .||...-.
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 4544 344566778889999999999998885 3566 5667677788888999999999998874 2 24544444
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCC------CCc-hHHH--HHHHHHccCChHHHHHHHHHHHh
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQ------DSG-IYVL--LANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~-~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.-+.-..+.++.++|..+..+.-+-+-+ +.. .|.. =+.+|.++|++..|++=|..+.+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 5555566788889999888877654431 011 1222 36788888899888877766643
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.4e-09 Score=110.23 Aligned_cols=246 Identities=12% Similarity=-0.004 Sum_probs=174.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHc---------ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 292 RSKEALALFHEMQATGIKPDA-VTTVHCLSACS---------QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
..++|...|++..+. .|+. ..+..+..++. ..+++++|...++++.+.++ .+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 467899999998875 4543 34444433322 33457889999998888753 35667778888899999
Q ss_pred ChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE-ITFLGILSACCHGGLVDEGRKYFA 437 (588)
Q Consensus 362 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 437 (588)
++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998764 3 4557888889999999999999999999986 4443 233344445666899999999999
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
++... ..+.++..+..+..+|...|++++|.+.++++. ..|+.. .+..+...+...| +.|...++++++..-..+
T Consensus 431 ~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 98764 222245567788889999999999999999874 345544 3444444556666 477777777765432222
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.....+..+|.-.|+.+.+... +++.+.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2233367777788888877776 87776653
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.5e-07 Score=83.22 Aligned_cols=454 Identities=11% Similarity=0.039 Sum_probs=235.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (588)
+.-+....++..|+.+++.-.. .+-.....+-.-+..++...|++++|...+.-+.+.. .++......|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 6667777788888887776543 2111111222223344457788888888877777643 4555555556666666677
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 007818 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209 (588)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 209 (588)
+.+|..+-.+.+ .++..-..+.....+.++-++...+-+.+... ...-.++.......-...+|.+++..++..
T Consensus 107 Y~eA~~~~~ka~-k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCC-CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777776665542 12223333444444555555554444443321 011112222222233444555555555443
Q ss_pred CCCCChhhHHH-HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHH
Q 007818 210 GLTLTVPLANA-LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288 (588)
Q Consensus 210 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 288 (588)
+ |+-...|. +.-+|.+.+-++-+.++++-..+. ...++...|..+....
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q----------------------------~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ----------------------------FPDSTIAKNLKACNLF 230 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh----------------------------CCCcHHHHHHHHHHHh
Confidence 1 11112221 222334444444444433332111 0011111222222222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHH
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLS-ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 367 (588)
+.=.-..|..-.+++.+.+-..-.. ...+++ -+.--.+-+.|++++-.+.+. -|. .-..|+-.|.+.++.++|.
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~ 305 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQEYPF-IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAI 305 (557)
T ss_pred hhhccchhHHHHHHHHhcccccchh-HHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHH
Confidence 2212223333344444432111000 001111 111223456677766555443 122 2234666788999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHh
Q 007818 368 QVFHEMPERNSLTYTAIIGGLALHGK-------ALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQM 439 (588)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (588)
.+.+++....+.-|..-.-.++..|+ ..-|.+.|+-.-..+..-|.. .-..+..++.-..++++.+.+++.+
T Consensus 306 ~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 306 SLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876555544433333444443 333444444433333332322 1233444455556788899888888
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC--CCHhHHHH-HHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA--ADVVVWGA-LFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
..- +..|...-..+..++...|++.+|+++|-++... .+..+|.. +.+.|.+.+..+.|..++-+. -.|.+..
T Consensus 386 ~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~f 461 (557)
T KOG3785|consen 386 ESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERF 461 (557)
T ss_pred HHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHH
Confidence 763 3333333345889999999999999999887422 24445544 445567778888887765443 2243333
Q ss_pred h-HHHHHHHHHccCChHHHHHHHHHHHhcCCccCC
Q 007818 517 I-YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550 (588)
Q Consensus 517 ~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 550 (588)
+ +..++..|.+.+.+-=|-+.|+.+...+.+|..
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 3 445688899999999999999999887665543
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=8.5e-08 Score=94.00 Aligned_cols=286 Identities=15% Similarity=0.111 Sum_probs=138.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChh-HHHHHHHHHHhC-
Q 007818 51 RGFLETGKMREAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY-VHNAVIHVFVSC- 127 (588)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~- 127 (588)
..+...|++++|++.++.-.. .-+|. ..+......+.+.|+.++|..++..+++.+ |+.. -|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 455777888888888876544 33443 345555677778888888888888888876 4443 344444444222
Q ss_pred ----CChhHHHHHhccCCC--CCcccHHHHHHHHHhCCCh-hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHH
Q 007818 128 ----GDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFP-REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200 (588)
Q Consensus 128 ----~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 200 (588)
.+.+...++++++.. |...+...+.-.+.....+ ..+...+..+..+|+|+ +|+.|-..|..........
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 234555556655322 1111111111111111122 23444556666677543 3444444455444444444
Q ss_pred HHHHHHHHh----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 007818 201 EIHWYISES----G----------LTLTV--PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 201 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (588)
+++...... + -+|+. .++..+...|-..|++++|++.++..++.++...
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~--------------- 228 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV--------------- 228 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH---------------
Confidence 554444332 0 01222 2334445555566666666666665544433211
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (588)
..|..-...+-+.|++.+|.+.++...... .-|...-+-....+.+.|+.++|.+++....+.+..
T Consensus 229 -------------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 229 -------------ELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 113334444445555555555555554432 123333333444444555555555555444444332
Q ss_pred Ccc--------hHHHHHHHHhHhcCChhHHHHHhccC
Q 007818 345 LNV--------VLGTALVDMYAKCGNIAKALQVFHEM 373 (588)
Q Consensus 345 ~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (588)
|.. ........+|.+.|++..|++.|..+
T Consensus 295 ~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 295 PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 221 11233455666666666666555444
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=2.3e-10 Score=99.46 Aligned_cols=230 Identities=12% Similarity=0.068 Sum_probs=188.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhc
Q 007818 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360 (588)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (588)
+.+.++|.+.|.+.+|.+-++..... .|-..||..+-.+|.+..++..|+.++.+-.+.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788889999999999988887775 5677788888899999999999999988777652 33444555677788888
Q ss_pred CChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 007818 361 GNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437 (588)
Q Consensus 361 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (588)
++.++|.++|+...+. ++.....+...|.-.++++.|+..|+++.+.| .-++..|..+.-+|.-.+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999987753 55666667778888999999999999999998 4578889999999999999999999999
Q ss_pred HhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 438 QMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 438 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
+.... --.|+ ..+|..+....+..|++.-|.+.|+-. ...| ....++.+.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98775 33344 577888888889999999999999866 3344 5668888877788999999999999999999996
Q ss_pred CC
Q 007818 514 DS 515 (588)
Q Consensus 514 ~~ 515 (588)
-.
T Consensus 462 m~ 463 (478)
T KOG1129|consen 462 MA 463 (478)
T ss_pred cc
Confidence 43
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.1e-09 Score=98.92 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=142.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 4567778899999999999999999998763 345667888889999999999999999999874 3455678888999
Q ss_pred HHHhcCChHHHHHHHHhCCCC----CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHH
Q 007818 458 LLGRSGLLEEAEQLIRSMPMA----ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (588)
.+...|++++|.+.+++.... .....+..+...+...|++++|...+.++++..|+++..+..++.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987422 2345677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 007818 534 AGKVRKMMEER 544 (588)
Q Consensus 534 A~~~~~~~~~~ 544 (588)
|.+++++..+.
T Consensus 188 A~~~~~~~~~~ 198 (234)
T TIGR02521 188 ARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.7e-11 Score=78.92 Aligned_cols=50 Identities=28% Similarity=0.608 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.4e-09 Score=104.90 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=154.7
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHh-----CC-CCcc-hHHHHHHHHhHhcCChhHHHHHhccCCC-------CC--
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKE-----NF-NLNV-VLGTALVDMYAKCGNIAKALQVFHEMPE-------RN-- 377 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-- 377 (588)
+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. ++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555444332 10 1111 1223455667777777777777766542 11
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcC--CC
Q 007818 378 --SLTYTAIIGGLALHGKALDAISYFSEMIG-----VGL-MPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFR--LS 446 (588)
Q Consensus 378 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 446 (588)
..+++.|..+|.+.|++++|...++...+ .|. .|... .++.+...|...+++++|..++....+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 23566677777888887777777766433 121 22222 466677778889999999998888765432 22
Q ss_pred CC----hHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhc---
Q 007818 447 PK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLE--- 509 (588)
Q Consensus 447 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 509 (588)
++ ..+++.|...|...|++++|.++++++. ..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 4678899999999999999999998772 122 255778888899999999999998887764
Q ss_pred -cCCCCC---chHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 510 -LDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 510 -~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
..|++| ..|.+|+.+|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345554 458899999999999999999999885
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.3e-09 Score=101.02 Aligned_cols=148 Identities=13% Similarity=-0.058 Sum_probs=75.6
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHH
Q 007818 290 AKRSKEALALFHEMQATG-IKPD--AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 366 (588)
.+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+..+ .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345566666666666432 1222 22344444455566666666666666555432 2345555666666666666666
Q ss_pred HHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 367 LQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 367 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
...|+...+ | +..+|..+..++...|++++|++.++...+. .|+..........+...+++++|...+++..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666655542 2 2344555555555666666666666665553 3332211111122233455666666665443
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=5.8e-07 Score=86.12 Aligned_cols=452 Identities=12% Similarity=0.052 Sum_probs=283.5
Q ss_pred hhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 007818 12 APSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88 (588)
Q Consensus 12 ~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (588)
.+-.++..|- .+.+..-.+..+.+- +....+.....-.+...|+.++|.+......+ +-.-+.+.|+.+.-.
T Consensus 10 lF~~~lk~yE---~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCYE---TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH---HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHH
Confidence 3445566664 555655555554432 11222333333345667888999888877665 233455678777777
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHH
Q 007818 89 CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAI 165 (588)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 165 (588)
+....++++|.+.+..+...+ +.|...+..+.-.-++.++++........ ..+.....|..+..++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999866 45667777777777778887776665554 34445667888888999999999999
Q ss_pred HHHHHhHHCC-CCCCcchHHHHHH------HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 007818 166 RLFRDMQLER-VEPDEVTMIGMVS------ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238 (588)
Q Consensus 166 ~~~~~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 238 (588)
.++++..+.. -.|+...|..... .....|..+.|.+.+...... +......-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999987764 3566666553332 235567777777776655443 1212333345567788999999999999
Q ss_pred HhcCCCCcc--hH-HHHHHHHHhcCCHHHHH-HHhhhCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 239 DSMVNKTVV--SC-TTMIVGYAKFGFLDIAR-KIFDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311 (588)
Q Consensus 239 ~~~~~~~~~--~~-~~ll~~~~~~~~~~~a~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 311 (588)
..+..+++. .| ..+..++.+-.+..++. .+|....+. ...+-..=+.......-.+...+++..+.+.|+++-
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 999776443 33 33444443333333333 455444321 111111111112222234456677778888887654
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHH----hC----------CCCcch--HHHHHHHHhHhcCChhHHHHHhccCCC
Q 007818 312 AVTTVHCLSACSQLGALDDGIWIHRFIEK----EN----------FNLNVV--LGTALVDMYAKCGNIAKALQVFHEMPE 375 (588)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~ 375 (588)
...+ ...+-.....+-..++.-.+.. .| -+|+.. ++-.++..|-..|+++.|...++....
T Consensus 323 f~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333 3323222211111111111111 11 133433 344567788899999999999999987
Q ss_pred CCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCC--CC--
Q 007818 376 RNSL---TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS--PK-- 448 (588)
Q Consensus 376 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~-- 448 (588)
..+. .|..-.+.+...|+.+.|..++++..+.. .||...-........++++.++|.++.....+. |.. .+
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~ 477 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLA 477 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-ccchhhhHH
Confidence 5544 34445678899999999999999999875 666666667778888999999999999988775 431 11
Q ss_pred --hHHHHHH--HHHHHhcCChHHHHHHHHhC
Q 007818 449 --LKHYSCM--VDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 449 --~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 475 (588)
.-.|-.+ +.+|.+.|++..|++-|..+
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1122222 45688888888888777666
No 76
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.7e-06 Score=87.01 Aligned_cols=497 Identities=12% Similarity=0.113 Sum_probs=285.9
Q ss_pred chhhHHHHhhcccCCCChhhHHhhcccCCC--CChhhH-----HHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHH
Q 007818 11 FAPSRLIAFCAISESKNLDYCTKILFNVQN--PNSFSW-----NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83 (588)
Q Consensus 11 ~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 83 (588)
+-+..+.+.|. +.|=...|++.+..+.. ....+- .-++ .|.-.-.++...+.++.|.. .+++.+..+.-
T Consensus 607 yDra~IAqLCE--KAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~-~NirqNlQi~V 682 (1666)
T KOG0985|consen 607 YDRAEIAQLCE--KAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLS-ANIRQNLQIVV 682 (1666)
T ss_pred ccHHHHHHHHH--hcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHH-HHHHhhhHHHH
Confidence 33556666777 77777777777766541 111110 0111 22233356777777777776 55666665555
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHhCCChhHHHHHhccCC-----------
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKL-----------GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC----------- 141 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------- 141 (588)
.+..-|...=..+...++|+..+.- ++.-|+.+.-..|.+.++.|++.+.+++.++..
T Consensus 683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 5554444443444455555554332 245677778888899999999999888876521
Q ss_pred --------CC-----Cccc-HHH------------HHHHHHhCCChhHHHHHHHHhHHCCCCCCcch-------------
Q 007818 142 --------VR-----NLVS-WNS------------LINGFVRSGFPREAIRLFRDMQLERVEPDEVT------------- 182 (588)
Q Consensus 142 --------~~-----~~~~-~~~------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------------- 182 (588)
-| |... .+. .|..|.+.=++.+.-.+.-.+..- .-+...
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCC
Confidence 01 1111 111 223333322222222221111110 111111
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH-HHH---HHHh------cCCCCc------
Q 007818 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES-AEE---IFDS------MVNKTV------ 246 (588)
Q Consensus 183 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~---~~~~------~~~~~~------ 246 (588)
...+..-+-++++...-..+++...+.|.. ++.++++|...|..+++-.+ -++ .++. ..++|+
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEe
Confidence 122333344555666666777777778876 88999999998887765332 111 1111 112222
Q ss_pred -----------------chHHHHHHHHHhcCCHHHHHHHhhhCC-----------------CCCcccHHHHHHHHHhcCC
Q 007818 247 -----------------VSCTTMIVGYAKFGFLDIARKIFDDLP-----------------EKYVVPWNAIIGGYVQAKR 292 (588)
Q Consensus 247 -----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~ 292 (588)
..|....+.+.+..+.+.-.+++.+-. ..|+......+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 123344444555666665555553221 1345557777888888888
Q ss_pred hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhC-----------------------CCCcc
Q 007818 293 SKEALALFHEMQATGIKP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-----------------------FNLNV 347 (588)
Q Consensus 293 ~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~ 347 (588)
..+-+++++++.-.+... +...-+.++-...+ .+...+.+..+++...+ +..+.
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccH
Confidence 888888888876432111 11112222222211 12222333322222111 00111
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
...+.|+. ..+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+ .-|+..|..+++.+.+.|
T Consensus 1079 ~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1079 SAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcC
Confidence 11111111 1233344443333333 456899999999999999998877643 346678999999999999
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (588)
.|++-.+++..++++ ...|... ..|+-+|++.++..+.++++ .-|+......+..-|...|.++.|.-+|.
T Consensus 1148 ~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-- 1218 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYS-- 1218 (1666)
T ss_pred cHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHH--
Confidence 999999999998887 5566554 56899999999999887776 34788888888888999999998888876
Q ss_pred hccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 508 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
+.+.|..|+..+...|.++.|...-+++
T Consensus 1219 ------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 ------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456778888888888888776554433
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=1.6e-07 Score=90.96 Aligned_cols=188 Identities=18% Similarity=0.126 Sum_probs=95.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
+....+.|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344555666666666555542 12223445555666666666666665322 223445566666666666
Q ss_pred HHHHhccCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc
Q 007818 366 ALQVFHEMPERN--SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443 (588)
Q Consensus 366 A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (588)
|.++-++...|. ...|.+-..-+-.+|++.+|.++|-... .|+. .+..|-+.|..+..+++.++-...
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 666666555442 2334444444555666666665553221 2332 344555556666555554443221
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHH
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (588)
.-..+...+..-|...|+...|.+-|-+.. -|...+..|...+-++.|.++
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHH
Confidence 112334455566666667666666664442 244444555555555555444
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=2.3e-09 Score=108.81 Aligned_cols=212 Identities=12% Similarity=0.018 Sum_probs=163.4
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH---------hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCC
Q 007818 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYA---------KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGK 393 (588)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 393 (588)
++.++|...+++..+..+. +...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467889999988876432 3444555555443 23457899999988774 356678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLI 472 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 472 (588)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+. .|+ ...+..++..+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999864 334567888888999999999999999999874 344 333344555677789999999999
Q ss_pred HhCC--CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 473 RSMP--MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 473 ~~~~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+++. ..|+ +..+..+..++...|++++|...+.++....|.+......++..|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8873 2353 4456667777889999999999999999888988888888988888888 4888888887654
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=5.7e-11 Score=76.49 Aligned_cols=50 Identities=34% Similarity=0.745 Sum_probs=37.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (588)
||..+||++|++|++.|++++|.++|++|.+ .|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 6777777777777777777777777777776 6777777777777777653
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.5e-06 Score=85.50 Aligned_cols=203 Identities=18% Similarity=0.166 Sum_probs=127.1
Q ss_pred cCCchhhHHHHhhcccCCCChhhHHhhcccCC-------------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 007818 8 SHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-------------NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG 74 (588)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 74 (588)
.+..+|.++.++|. +..+++-|.-.+-.|. .++ ..=..+.-.-.+.|..++|..+|.+-.+
T Consensus 755 kS~~vW~nmA~McV--kT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCV--KTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhhHHHHHHHHHhh--hhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 34567888888888 7777777766665553 221 1111112222456788888888888766
Q ss_pred CCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC------------
Q 007818 75 TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV------------ 142 (588)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------ 142 (588)
|..+=+.|...|.+++|.++-+.--...+ ..||......+-..+|.+.|++.|++...
T Consensus 829 -------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 829 -------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred -------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 44555666777888888877665433222 23555555566667888888888876321
Q ss_pred -----------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 007818 143 -----------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211 (588)
Q Consensus 143 -----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 211 (588)
.|...|.-....+-..|+.+.|+.+|...+. |-.+.+..+-+|+.++|-++-++--
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg---- 965 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG---- 965 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc----
Confidence 1333344444444556777777777766543 3445556666777777777655422
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 212 TLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 212 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
|......|.+.|-..|++.+|..+|.+.
T Consensus 966 --d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 966 --DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455567888888888888888888775
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.2e-07 Score=81.17 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=197.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 007818 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV-HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353 (588)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (588)
.|+.....+.+++...|+.++|+..|++.... .|+..+-. ...-.+...|+++....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 45666888999999999999999999988764 45544322 22223456788888888777765543 1122223333
Q ss_pred HHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
+......+++..|+.+-++..+.+ ...+..-...+...|++++|.-.|+..+... +-+..+|..++.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 344556788999999988877544 4455444567889999999999999988752 346679999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMV-DLLG-RSGLLEEAEQLIRSM-PMAADV-VVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
+|...-+...+ -++.+..+...+. ..+. ....-++|.+++++. ..+|+. .....+..-|...|.++.++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99988888776 4455666666553 3322 333458899999875 677874 4666777778899999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.+...| |....+.|++.+...+.+++|.+.|..+.+.+.
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999999 567899999999999999999999998876543
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=3.1e-08 Score=95.81 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=65.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhc-----C-CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIF-----R-LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAAD 480 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~ 480 (588)
++..+...|.+.|++++|.++++++.... + ..-....++.|...|.+.+.+.+|.++|.+.. ..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 66777777777777777777777765541 1 11124556677777888888887777777652 2243
Q ss_pred -HhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 481 -VVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 481 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
..++..|..+|...|+++.|+++..+++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44778888888888888888888887763
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.4e-06 Score=82.73 Aligned_cols=213 Identities=12% Similarity=0.043 Sum_probs=138.6
Q ss_pred HHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH--
Q 007818 16 LIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-- 90 (588)
Q Consensus 16 ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 90 (588)
=+..+. +.|++++|.+....+. +.|..++.+=+-++.+.+++++|+.+.+.-.. ...+...+ +=++|+
T Consensus 18 ~ln~~~--~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHG--KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHHhc--cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhh--HHHHHHHH
Confidence 345666 8999999998887754 56677788888888999999999965544321 11222221 334554
Q ss_pred ccCChhhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 007818 91 SLGLRFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169 (588)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (588)
+.+..++|...++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+...+...+++-+..-- .+... .
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-Q 162 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-H
Confidence 8899999999888 3333 344666777888899999999999999877777766665554322111 11111 1
Q ss_pred HhHHCCCCCCcchHHHHHH---HHhccCChhHHHHHHHHHHHhCC-------CCCh-------hhHHHHHHHHHhcCChh
Q 007818 170 DMQLERVEPDEVTMIGMVS---ACAQLEDLNLGREIHWYISESGL-------TLTV-------PLANALMDMYVKCGKLE 232 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~ 232 (588)
.+......| ..+|..+.+ .++..|++.+|+++++.....+. .-+. .+..-+...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 233333333 446665554 34678999999999998843221 1111 12334555677789999
Q ss_pred HHHHHHHhcCCC
Q 007818 233 SAEEIFDSMVNK 244 (588)
Q Consensus 233 ~A~~~~~~~~~~ 244 (588)
+|..++..+.+.
T Consensus 242 ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 242 EASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHh
Confidence 999988888654
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=7.9e-07 Score=86.29 Aligned_cols=350 Identities=15% Similarity=0.099 Sum_probs=207.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 007818 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 230 (588)
.+.+......|.+|+.+++.+.... ....-|..+...|+..|+++.|+++|-+. ..++..+.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3556677889999999999887653 34455778889999999999999988543 345778899999999
Q ss_pred hhHHHHHHHhcCCCC--cchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007818 231 LESAEEIFDSMVNKT--VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308 (588)
Q Consensus 231 ~~~A~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 308 (588)
|+.|.++-.+...|. ...|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++...-...
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh--
Confidence 999999998887663 44566666667889999999999988877653 467788899998888887654321
Q ss_pred CCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcc-----hH--
Q 007818 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-----TY-- 381 (588)
Q Consensus 309 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~-- 381 (588)
.-..|-..+..-+...|++..|..-|-+..+ |.+.+++|-..+-+++|.++-+.--..|.. .|
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 1223555666667778888888776643332 355666777777777777766543322211 11
Q ss_pred -----------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC
Q 007818 382 -----------------TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 382 -----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
..-+.-.+..+-++-|..+-+-..+.. .|. .-..+..-+...|++++|-+.+-+..+...
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 111122233344444444444333322 122 112223334566778887766666554311
Q ss_pred C-------CCChHHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 445 L-------SPKLKHY---------SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 445 ~-------~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
+ .|+..-. ..-+..+.+..+|..|..+-+.-....-+..+..-.+.....|++.+|+..+-++-
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran 1106 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN 1106 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC
Confidence 1 0110000 01122334444455444444433211112334444444556777777777654432
Q ss_pred ccCCCCCchHHHHHHHHHccCChHHHHHHHH
Q 007818 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 509 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
.|+ ...+-|...+.|.+|+++-+
T Consensus 1107 --kp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1107 --KPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred --CCc------hHHHHHHHhccChHHHHHHH
Confidence 232 12334556677777776544
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=6.6e-07 Score=77.42 Aligned_cols=412 Identities=11% Similarity=0.040 Sum_probs=232.9
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH-HHH
Q 007818 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG-MVS 188 (588)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~ 188 (588)
...-+++.+..+++..++.+|++++..-.+ .+......|..+|....++..|-+.++++-.. .|...-|.. -..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 334466777777888888888888865433 34556677777888888888888888888764 455555532 234
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH--HHHhcCChhHHHHHHHhcCC-CCcchHHHHHHHHHhcCCHHHH
Q 007818 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMD--MYVKCGKLESAEEIFDSMVN-KTVVSCTTMIVGYAKFGFLDIA 265 (588)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a 265 (588)
.+.+.+.+..|..+...|... ++...-..-+. .....+++..+..++++... .+..+.+.......+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 556677777777777666543 11111111111 22346777777777777764 3444444444445567777777
Q ss_pred HHHhhhCCCC-Ccc---cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhH---HHHHH--H
Q 007818 266 RKIFDDLPEK-YVV---PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD---GIWIH--R 336 (588)
Q Consensus 266 ~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~--~ 336 (588)
.+-|+...+- +.. .||..+ +..+.++++.|++...+++++|++.... ++ .|..-+ +..+= .
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDVRSVGNTL 233 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCchhcccchH
Confidence 7777766542 211 244333 3345566777777777777776542111 00 000000 00000 0
Q ss_pred HHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 411 (588)
.+..++ -+..+|.-...+.+.|+++.|.+.+-.|+. -|++|...+.-.= ..+++.+..+-+.-+...+ +-
T Consensus 234 ~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 234 VLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CC
Confidence 000000 012334444556788999999999999984 3677776554332 2345555666666666653 23
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHhHHHHHHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG-RSGLLEEAEQLIRSMPMAADVVVWGALFFA 490 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 490 (588)
...||..++-.||+..-++.|..++-+-....-.-.+...|+ |++++. ..-..++|.+-++.+...-....-...+..
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~v 387 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQV 387 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999988887655432200112333444 344443 445677777766655211111111111111
Q ss_pred -HHhhCC----HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 491 -CRLHGN----VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 491 -~~~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
-.++.+ ...|+.-+++.++..- .+....++.|.+..++.-+.+.|..-.+--.+.
T Consensus 388 Qe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 388 QEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 112222 2234445555555442 156778899999999999999999877654333
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=1.1e-06 Score=85.92 Aligned_cols=403 Identities=14% Similarity=0.119 Sum_probs=254.2
Q ss_pred cCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHH
Q 007818 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV-TMI 184 (588)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~ 184 (588)
.+.-|..+|..+.-++...|++..+.+.|++..+ .....|+.+...+...|....|..+++.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556778888888888889999999999988543 355678888889999999999999988765543234433 343
Q ss_pred HHHHHHh-ccCChhHHHHHHHHHHHh--CCC--CChhhHHHHHHHHHhc-----------CChhHHHHHHHhcCCC---C
Q 007818 185 GMVSACA-QLEDLNLGREIHWYISES--GLT--LTVPLANALMDMYVKC-----------GKLESAEEIFDSMVNK---T 245 (588)
Q Consensus 185 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~---~ 245 (588)
..-+.|. +.+..+++..+...+... +.. ..+..+..+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444454 467788888877777662 111 1233444444444321 1234566667776443 4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 007818 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPE----KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA-VTTVHCLS 320 (588)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~ 320 (588)
+...-.+.--|+-.++.+.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+..... -|+. .-...-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhh
Confidence 43333444456777888888887776544 34555888888889999999999988876653 1221 10001111
Q ss_pred HHcccCChhHHHHHHHHHHH---------------------hCC-------CCcchHHHHHHHHhHhcC---ChhHHHHH
Q 007818 321 ACSQLGALDDGIWIHRFIEK---------------------ENF-------NLNVVLGTALVDMYAKCG---NIAKALQV 369 (588)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~~~~---~~~~A~~~ 369 (588)
.-..-++.+++......+.. .|. .-.+.++..+.......+ ..+..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 11123333333322222111 010 001122222222111111 11111111
Q ss_pred hccCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc
Q 007818 370 FHEMPERN------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443 (588)
Q Consensus 370 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (588)
+...+.|+ ...|......+.+.++.++|...+.+..+.. +-....|......+...|.+++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 11111222 1246667778889999999998888877642 444556777777888899999999999988752
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQ--LIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
-|.++.+..++..++.+.|+..-|.. ++..+ +..| +...|..+...+.+.|+.++|...|.-++++++.+|.
T Consensus 714 -dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 714 -DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred -CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 23447888999999999998887777 77766 5566 6789999999999999999999999999999887664
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=6.8e-07 Score=87.80 Aligned_cols=281 Identities=14% Similarity=0.061 Sum_probs=189.4
Q ss_pred HHhhcccCCCChhhHHhhcccCC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-c-
Q 007818 17 IAFCAISESKNLDYCTKILFNVQ--NPN-SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-S- 91 (588)
Q Consensus 17 l~~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~- 91 (588)
...+. ..|++++|+..++... -.| ........+.+.+.|+.++|..+|..+.. ..|+...|...+..+. .
T Consensus 11 ~~il~--e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILE--EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---RNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHH--HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHhhh
Confidence 34555 7899999999998754 334 44566778899999999999999999988 4577776655554444 1
Q ss_pred ----cCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHH-HHhccCCCC-CcccHHHHHHHHHhCCChhHHH
Q 007818 92 ----LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC-NVFDESCVR-NLVSWNSLINGFVRSGFPREAI 165 (588)
Q Consensus 92 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 165 (588)
..+.+....+++.+.+.- |.......+.-.+.....+.... ..+...... -+..|+.+-..|....+.+-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 235677888888887654 33322222222222212222222 222222222 3355666666666555555555
Q ss_pred HHHHHhHHC----C----------CCCCc--chHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC
Q 007818 166 RLFRDMQLE----R----------VEPDE--VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229 (588)
Q Consensus 166 ~~~~~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 229 (588)
+++...... + -+|+. .++..+...|...|+.++|.++++..++..+. .+..|..-.+.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 666555432 1 12333 24556677888999999999999999988432 4778899999999999
Q ss_pred ChhHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc------------HHHHHHHHHhcCChH
Q 007818 230 KLESAEEIFDSMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP------------WNAIIGGYVQAKRSK 294 (588)
Q Consensus 230 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~l~~~~~~~~~~~ 294 (588)
++.+|.+.++..+.- |-..-+-....+.+.|+.++|.+++......+..+ ......+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999888665 44455666777889999999999999887766433 234567888899988
Q ss_pred HHHHHHHHHHH
Q 007818 295 EALALFHEMQA 305 (588)
Q Consensus 295 ~a~~~~~~~~~ 305 (588)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88877766554
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.5e-05 Score=78.99 Aligned_cols=415 Identities=11% Similarity=0.093 Sum_probs=235.8
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--CCcccH----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCV--RNLVSW----NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
+..+.+.|.+.|-+.+|++.+.++.. +.+..- -..+-.|...-.++.+++.++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566677777777777777765321 111100 011223444456788888888888888888877777776666
Q ss_pred hccCChhHHHHHHHHHHH-----------hCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---------------
Q 007818 191 AQLEDLNLGREIHWYISE-----------SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--------------- 244 (588)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------- 244 (588)
...=-.+...++|+.... .++.-|+.+....+.+.++.|++.+.+++.++-.--
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 655455555555554432 135567777888899999999988888877654111
Q ss_pred ---------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCC----------------------------CcccHHHHHHHH
Q 007818 245 ---------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEK----------------------------YVVPWNAIIGGY 287 (588)
Q Consensus 245 ---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~l~~~~ 287 (588)
|...+..=+..|.-.++..+-++++-+-..+ +..+-..|..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 1111211122222223333333333222111 112233344444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHH-H---------HHHHHHHHhCC--------------
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-I---------WIHRFIEKENF-------------- 343 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~---------~~~~~~~~~~~-------------- 343 (588)
-+.++..--...++.....|. .|..|++.+...|...++-.+. + .+=+...+.++
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 555666666677777777774 5788899888887655443221 1 11111111111
Q ss_pred -----CCcchHHHHHHHHhHhcCChhHHH-----------HHhccC----C--CCCcchHHHHHHHHHhcCChHHHHHHH
Q 007818 344 -----NLNVVLGTALVDMYAKCGNIAKAL-----------QVFHEM----P--ERNSLTYTAIIGGLALHGKALDAISYF 401 (588)
Q Consensus 344 -----~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 401 (588)
...-..|....+.+.+..+.+-=. .+++.. . ..|+...+..+.++...+-+.+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 011123334444444444433211 122222 1 247777788888888888888888888
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHhcc---------------------------CCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 402 SEMIGVG--LMPDEITFLGILSACCH---------------------------GGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 402 ~~~~~~~--~~p~~~~~~~l~~~~~~---------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
++..-.. +.-+...-+.++-...+ .+-+++|..+|++.. .+....
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~ 1081 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAI 1081 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHH
Confidence 8876432 11111122222222222 233344444443331 223333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (588)
+.|++ ..+..+.|.++-++. ..+..|..+..+-.+.|...+|+..|-++ +||..|...+.+..+.|+|+
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence 33333 334555555555554 35678999999999999999999988765 68899999999999999999
Q ss_pred HHHHHHHHHHhcCCccC
Q 007818 533 EAGKVRKMMEERGVEKT 549 (588)
Q Consensus 533 ~A~~~~~~~~~~~~~~~ 549 (588)
+-.+++..++++.-+|.
T Consensus 1151 dLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPY 1167 (1666)
T ss_pred HHHHHHHHHHHhhcCcc
Confidence 99999998887765543
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=3.2e-08 Score=82.39 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=140.6
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
..|.-.|...|++..|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+.. +-+..+.+....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 45666778888888888888877653 33467777778888888888888888877753 334456666777777888
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
.+++|...|++......+..-..+|..++-+..+.|+++.|.+.|++. ...| .+.+...+.....+.|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888888776444444677778888888888888888888775 3444 35566777777778888888888888
Q ss_pred HHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+.....+.....+-..+.+-.+.|+-+.|-++=.++.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88777776777777777777788888877777666643
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.5e-07 Score=85.76 Aligned_cols=249 Identities=12% Similarity=0.012 Sum_probs=157.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHH-------H
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT-------A 352 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 352 (588)
...+.....+..+++.|++.+....+.. -+..-++....++...|.+..+........+.|-. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5556677777788888888888887753 34444455566677777777666665555444321 111122 2
Q ss_pred HHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDE 431 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 431 (588)
+..+|.+.++++.+...|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334566677788888888775432111 1112223344555555444433 233332 22233566778899999
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...|.++.+. .|.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.--+.++....+++.|...|.++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998874 3666888888888999999988888776654 34443 44555556666777889999999999999
Q ss_pred cCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.+|++..+...+.++...........++.++
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9998888888777777654434444444444
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=1.4e-07 Score=87.52 Aligned_cols=213 Identities=16% Similarity=0.070 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHHHHhC-CCC--cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 007818 326 GALDDGIWIHRFIEKEN-FNL--NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAIS 399 (588)
Q Consensus 326 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 399 (588)
+..+.++..+.++.... ..| ....+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666665555432 122 234566777778888888888888877653 345678888888888888888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 007818 400 YFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-- 476 (588)
Q Consensus 400 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 476 (588)
.|++..+. .|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+++..
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888874 444 456777777788888888888888888764 2332212222223445677888888886542
Q ss_pred CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLL-------ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 477 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
..|+...+ . ......|+...+ ..+..+. ++.|+.+.+|..++.++.+.|++++|...|+++.+.+++
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22332222 1 222234444332 2333332 445666678888888888888888888888888876643
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.1e-07 Score=84.72 Aligned_cols=413 Identities=13% Similarity=0.067 Sum_probs=230.9
Q ss_pred HHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhH
Q 007818 87 KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
.+....|+++.|..+|...+.... +|...|..-..+|+..|++++|++=-.+ +.+.....|.-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 345577888888888888887663 4677788888888888888887765543 344455678888888888888888
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHH-----HHHHhcCChhHHHHHH
Q 007818 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM-----DMYVKCGKLESAEEIF 238 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 238 (588)
|+..|.+-.+.. +-+...+.-+..++ ..+.+. +. .-.++..+..+. +.+...-.+-. ++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~---~l 152 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVK---IL 152 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHH---HH
Confidence 888887766542 22333344444443 111000 00 001122222111 11111111111 11
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCC------------CCcccHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 007818 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE------------KYVVPWNAIIGGYVQAKRSKEALALFHEMQA- 305 (588)
Q Consensus 239 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 305 (588)
..+ +.++...+ .+.....+..+.-.+..... +...+- .+.. .......++.+
T Consensus 153 ~~~-~~~p~~l~----~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-------~~~~---~~~~~~~d~~ee 217 (539)
T KOG0548|consen 153 EII-QKNPTSLK----LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-------KQEH---NGFPIIEDNTEE 217 (539)
T ss_pred HHh-hcCcHhhh----cccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-------cccC---CCCCccchhHHH
Confidence 111 11111110 01110111111111111100 000000 0000 00000000000
Q ss_pred CCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCc---c---
Q 007818 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS---L--- 379 (588)
Q Consensus 306 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--- 379 (588)
....--..-...+.++..+..+++.+.+-+....... .+..-++....+|...|.+......-....+... .
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 0000011224455666667777777777777776665 4555567777778888877776665555443211 1
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh-HHHHH
Q 007818 380 ----TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL-KHYSC 454 (588)
Q Consensus 380 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 454 (588)
.+..+..+|.+.++++.++..|.+.......|+..+ +....+++....+... -+.|.. .-...
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~ 363 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEERE 363 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHH
Confidence 122234456667788888888888666544443321 2223344444333332 223332 12223
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChH
Q 007818 455 MVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (588)
-...+.+.|++..|...|.++. ..| |...|.....+|.+.|.+..|+.-.++.++++|+....|..=+.++....+|+
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 3667789999999999999873 335 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 007818 533 EAGKVRKMMEERG 545 (588)
Q Consensus 533 ~A~~~~~~~~~~~ 545 (588)
+|.+.|++..+.+
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888765
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.3e-06 Score=75.68 Aligned_cols=190 Identities=12% Similarity=-0.004 Sum_probs=134.2
Q ss_pred hhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHH-HHH
Q 007818 13 PSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL-FKV 88 (588)
Q Consensus 13 ~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~ 88 (588)
++..+.-.. +..++++|++++.... +.+....+.+...|.+..++..|-+-|+++.. ..|...-|... .+.
T Consensus 13 ftaviy~lI--~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLI--RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHH--HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence 445555455 7788999999887543 34666788888899999999999999999977 55766555433 355
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCChhHHHHHH----HHHHhCCChhHHHHHhccCC-CCCcccHHHHHHHHHhCCChhH
Q 007818 89 CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI----HVFVSCGDLGLACNVFDESC-VRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
+-+.+.+..|.++...|.+. + ...+..+ ......+++..+..++++.+ +.+..+.+...-...+.|+++.
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 66788888899988877652 2 2222222 12234788888999998877 3556666666666678899999
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 007818 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (588)
|.+-|+...+-+---....|+..+ +..+.|+.+.|.+...++++.|+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 999998887654333445666554 4456788899999999998887763
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=1.2e-06 Score=87.96 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=66.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH----HHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS----CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 489 (588)
..|........+.+.+..|.+...++..-.....+...|+ .+.+.+...|.++.|..-+.....+.+......-+.
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence 3444444444444555544444444322111122223333 233445555666666555544433333333332222
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
. .-.|+++++...|++++.+.-.+. .....++++....|..+.|...+=+...
T Consensus 1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 2 345778888888888887654432 3445566666777777777776555543
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=6.3e-08 Score=88.34 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----cCCch
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC----HGGLV 429 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~ 429 (588)
...+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 34556677778777777665 44555666677777788888888888877764 3333 3333333332 23357
Q ss_pred HHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCH-HHHHHHHHH
Q 007818 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNV-SIGERAAMK 506 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~-~~A~~~~~~ 506 (588)
.+|..+|+++.+ .+++++.+.+.++.+....|++++|.+++++. ...| ++.++..++-.....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 778888888766 45567777777777777777777777777664 2333 455555665555555655 556667777
Q ss_pred HhccCCCCCc
Q 007818 507 LLELDPQDSG 516 (588)
Q Consensus 507 ~~~~~p~~~~ 516 (588)
+....|++|.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 7777776553
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.2e-08 Score=92.94 Aligned_cols=244 Identities=12% Similarity=0.057 Sum_probs=158.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ ..+.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777765554 222211122334445666677777655433 3333332 5555555555544444345556
Q ss_pred HHHHhccCC-CC----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 366 ALQVFHEMP-ER----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 366 A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
+..-+++.. ++ +..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665555433 22 2222233335567789999999988642 456777788899999999999999999997
Q ss_pred hhcCCCCChHHHHHHHHHHH----hcCChHHHHHHHHhCCC--CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 441 SIFRLSPKLKHYSCMVDLLG----RSGLLEEAEQLIRSMPM--AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
+. ..| .+...++.++. -...+.+|..+|+++.. .+++.+.+.++.+....|++++|...+.++++.+|++
T Consensus 159 ~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 QI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp CC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred hc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 53 334 33444555443 23369999999999853 3677888888888999999999999999999999999
Q ss_pred CchHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 007818 515 SGIYVLLANMYRDSNMW-EEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 544 (588)
+.++.+++-+....|+. +.+.++++++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6788888887653
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=7.4e-07 Score=78.67 Aligned_cols=294 Identities=15% Similarity=0.072 Sum_probs=159.0
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHH---HHHHhcCCHHHHHHHhhhCCCCCcccHHHH---HHHHHhcCCh
Q 007818 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI---VGYAKFGFLDIARKIFDDLPEKYVVPWNAI---IGGYVQAKRS 293 (588)
Q Consensus 220 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~ 293 (588)
.+...+...|++..|+.-|...++.|+..|.++. ..|...|+-..|..-|....+..+..+.+- ...+.++|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3444444455555555555555555544444332 223344444444443433333222222221 1234455555
Q ss_pred HHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 294 KEALALFHEMQATGIKPD--------------AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 294 ~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
++|..-|+...+.....+ .......+..+...|+...|+.....+.+.. +.+...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 555555555554321000 0112223334455667777777776666543 3355666666777777
Q ss_pred cCChhHHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHh
Q 007818 360 CGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT----FLGI---------LSAC 423 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~l---------~~~~ 423 (588)
.|++..|..=++... ..+..++--+...+...|+.+.++...++-++. .||... |..+ +...
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766554443 445666666666777777777777777776663 555431 1111 1122
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCC
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGN 496 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 496 (588)
...++|.++.+..+...+. .|. ...+..+-.++...|++.+|++...++ ...|+ +.++..-..+|.-...
T Consensus 280 ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 3456666666666666653 222 233445556666677777777766654 34453 6666666677777777
Q ss_pred HHHHHHHHHHHhccCCCCCchHH
Q 007818 497 VSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
++.|+.-|+++.+.+|+|..+-.
T Consensus 357 YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHHH
Confidence 77777777777777776654433
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2.3e-08 Score=94.27 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=102.2
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAA 504 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (588)
.......++|-.+....+..+|+.+...|.-.|.-.|++++|.+.|+.+ ..+| |...|+.+..+++...+.++|+..|
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445566666666655465688999999999999999999999999986 4566 7889999999999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+++++.|.-..+..+|+..|...|.|++|.++|=.++.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=8.8e-08 Score=82.45 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh
Q 007818 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (588)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777765444322211 11 012235667788888887776 4466788899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHH-HhhCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 466 EEAEQLIRSM-PMAA-DVVVWGALFFAC-RLHGN--VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 466 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 3455 566777777764 56676 59999999999999999999999999999999999999999999
Q ss_pred HHhcCCc
Q 007818 541 MEERGVE 547 (588)
Q Consensus 541 ~~~~~~~ 547 (588)
+.+...+
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 9876543
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=3.9e-06 Score=81.13 Aligned_cols=257 Identities=11% Similarity=-0.009 Sum_probs=150.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHcccCChhHHHHHHHHHHHhCCCCc-chHHHHHHHHhHhcC
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVH---CLSACSQLGALDDGIWIHRFIEKENFNLN-VVLGTALVDMYAKCG 361 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 361 (588)
.+...|++++|.+.+++..+.. +.|...+.. ........+..+.+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556778888888888877652 223323331 11111223444444444443 1112222 233345556778888
Q ss_pred ChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhccCCchHHHHHH
Q 007818 362 NIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDE--ITFLGILSACCHGGLVDEGRKY 435 (588)
Q Consensus 362 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 435 (588)
++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888887763 3455677788888888899999888888776432 1222 2355677788888999999999
Q ss_pred HHHhhhhcCCCCChHHH-H--HHHHHHHhcCChHHHHHH---HHhCCCC-C---CHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 436 FAQMSSIFRLSPKLKHY-S--CMVDLLGRSGLLEEAEQL---IRSMPMA-A---DVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 436 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
+++........+..... + .++..+...|....+.++ ....... | ..........++...|+.+.|...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88875421111222111 1 233334444533333332 1111101 1 11122245555677888998988888
Q ss_pred HHhccCC---------CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 506 KLLELDP---------QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 506 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+....- .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7754221 134455677888899999999999999997654
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=1.6e-07 Score=84.55 Aligned_cols=181 Identities=9% Similarity=-0.030 Sum_probs=112.5
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC--CC-c---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-S---LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI----T 415 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~ 415 (588)
....+..+...+...|++++|...|+++.. |+ + ..+..+..++...|++++|+..++++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 344555666667777777777777776653 21 1 245556667777777777777777776642 2211 3
Q ss_pred HHHHHHHhccC--------CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHH
Q 007818 416 FLGILSACCHG--------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487 (588)
Q Consensus 416 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 487 (588)
+..+..++... |++++|.+.++.+... .+.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44444444433 5666777777777653 1222222222211100 00000 0011244
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+...|++.+|+..++++++..|+++ .++..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5567889999999999999999987654 688999999999999999999999887653
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=3.8e-06 Score=74.34 Aligned_cols=309 Identities=10% Similarity=0.037 Sum_probs=195.8
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH---HHHhccCChhHHHHHHHHHHHhCCCCChh-hHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV---SACAQLEDLNLGREIHWYISESGLTLTVP-LAN 219 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 219 (588)
++.-.-.+...+...|++..|+.-|...++. |+..|..+. ..|...|+...|..-+...++. +||-. ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3344445666677777777787777776642 444444443 3566677777777777766665 33422 112
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 007818 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299 (588)
Q Consensus 220 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 299 (588)
--...+.+.|.+++|..-|+.+.+.++.. +....++.+....++-+. ....+..+...|+...|++.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHH
Confidence 22335567777777777777775543310 000111111111111111 12234456677888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcc
Q 007818 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379 (588)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 379 (588)
...+.+. .+.|...+..-..+|...|.+..|+.=++...+.... +...+-.+...+...|+.+.++..+++-.+-|+.
T Consensus 178 i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 178 ITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 8888875 3567777777778888888888888777777665433 4445555667777888888888877776643221
Q ss_pred ------hHHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 380 ------TYTAI---------IGGLALHGKALDAISYFSEMIGVGLMPDEI---TFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 380 ------~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
.|..| +......+++.++++..+...+........ .+..+-.++...+++.+|++...++..
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 12111 223456788899999988887763221222 455566777888999999999999985
Q ss_pred hcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 442 IFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 442 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
+.|+ ..++---..+|.-..+++.|+.-|+.+.
T Consensus 336 ---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 ---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred ---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3454 8888888889999999999999998873
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=1.8e-05 Score=76.45 Aligned_cols=200 Identities=13% Similarity=-0.022 Sum_probs=122.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc-HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH-
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA- 119 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 119 (588)
....|..+...+...|+.+.+.+.+....+.....++... .......+...|++++|...+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3445666667777777777777777766552222222211 1112234457788888888888888764 333333331
Q ss_pred --HHHHHHhCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 120 --VIHVFVSCGDLGLACNVFDESCVRNL---VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 120 --l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
........+..+.+.+.++...+.+. .....+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 11112224555566666554322222 233344557778888888888888888763 334556677777888888
Q ss_pred ChhHHHHHHHHHHHhCCC-CCh--hhHHHHHHHHHhcCChhHHHHHHHhcCC
Q 007818 195 DLNLGREIHWYISESGLT-LTV--PLANALMDMYVKCGKLESAEEIFDSMVN 243 (588)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 243 (588)
++++|...++........ ++. ..+..+...+...|++++|..+++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888887765322 222 2345677888888888888888888653
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=0.0001 Score=69.66 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
+-|..+|+.||+-+..+ .++++.+.++++.. ..| ....|..-+..-.+.++++.++++|.+-+..- .+...|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~---~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN---VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 45777888888877666 78888888888765 334 34567777777778888888888888877654 3455666
Q ss_pred HHHHHHHh-CCChhHHHHHh--------cc--CCCCCcccHHHHHHH---------HHhCCChhHHHHHHHHhHH
Q 007818 119 AVIHVFVS-CGDLGLACNVF--------DE--SCVRNLVSWNSLING---------FVRSGFPREAIRLFRDMQL 173 (588)
Q Consensus 119 ~l~~~~~~-~~~~~~A~~~~--------~~--~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~ 173 (588)
..++.-.+ +|+...+.... ++ +...+...|+..+.. +..+.+++...+++.++..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 55554333 33333322211 11 222333445444332 3344566667777777664
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=1.5e-07 Score=76.63 Aligned_cols=94 Identities=9% Similarity=-0.199 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+..+...+...|++++|.+.|+.+ ...| +...+..+..++...|++++|+..++++++++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 445566666777777777777665 2333 55666666667777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcC
Q 007818 530 MWEEAGKVRKMMEERG 545 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~ 545 (588)
++++|.+.+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777776543
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=8.9e-06 Score=82.06 Aligned_cols=177 Identities=12% Similarity=0.034 Sum_probs=107.5
Q ss_pred CChhhHHhhcccCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHccCChhhHHHH
Q 007818 26 KNLDYCTKILFNVQNPN---SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTYPLLFKVCASLGLRFLGYEI 101 (588)
Q Consensus 26 g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 101 (588)
.+...|...|-+..+.| ...|..|...|+..-+..+|..-|....+ +.+ +..........+++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 44555665554433222 23577777777777777788888877765 333 345566677777888888888777
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCC
Q 007818 102 FGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177 (588)
Q Consensus 102 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 177 (588)
.-...+... .....-|..+--.|...++...|..-|+. ..+.|...|..+..+|.+.|++..|+++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 433333221 01111222333445666777777777775 34456777788888888888888888888777653 3
Q ss_pred CCcchHHHHHH--HHhccCChhHHHHHHHHHHH
Q 007818 178 PDEVTMIGMVS--ACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 178 p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 208 (588)
|+. +|...-. .-+..|...++...+..+..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443 3332222 23456777777777766654
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=2.5e-05 Score=77.21 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=87.3
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
..|.+++|..++.+.+. |..|=+.|...|.+++|.++-+.-.+ +. =..||......+-..++.+.|.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 46677777777665443 44444555566777777666554322 11 12345455555555566666665554
Q ss_pred HH----------HHhcC---------CCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 007818 104 HV----------LKLGF---------DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164 (588)
Q Consensus 104 ~~----------~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (588)
.. +...+ ..|...|.--...+-..|+.+.|+..+... .-|-.+++..+-.|+.++|
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHH
Confidence 32 11110 122333333334444567777777777653 2344555556666666666
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 007818 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206 (588)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 206 (588)
-++-++ ..|......+.+.|-..|++.+|..+|-..
T Consensus 958 a~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 958 ARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666544 224444555666666666666666666544
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=2.8e-05 Score=85.46 Aligned_cols=297 Identities=10% Similarity=-0.034 Sum_probs=137.2
Q ss_pred hhhHHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhC----CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhH
Q 007818 95 RFLGYEIFGHVLKLGFD--V-D----MYVHNAVIHVFVSC----GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 95 ~~~a~~~~~~~~~~~~~--~-~----~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
.+.+..+++.+...|+- + + .+.|+.++.-+.+. .+.+....+ .......+...|++.+
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~~ 359 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPSE 359 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHHH
Confidence 34467788888877741 1 1 24456666555432 122222222 2222334555566655
Q ss_pred HHHHHHHhHHCCCCCCc-chHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 164 AIRLFRDMQLERVEPDE-VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
|......... .+.. .............|+.+.+...+..+.......++.........+...|+++++...+....
T Consensus 360 Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 360 AIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544333211 0000 01111122334456666666665554222112223333444555566778888777776542
Q ss_pred C----CC---c-c----hHHHHHHHHHhcCCHHHHHHHhhhCCC----CCc----ccHHHHHHHHHhcCChHHHHHHHHH
Q 007818 243 N----KT---V-V----SCTTMIVGYAKFGFLDIARKIFDDLPE----KYV----VPWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 243 ~----~~---~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
. .+ . . ....+...+...|++++|...++.... .+. ...+.+...+...|++++|...+.+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 11 1 0 111122334456677777666665432 111 1134455556667777777777777
Q ss_pred HHHCCC---CC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHh----CCCC---cchHHHHHHHHhHhcCChhHHHHHh
Q 007818 303 MQATGI---KP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKE----NFNL---NVVLGTALVDMYAKCGNIAKALQVF 370 (588)
Q Consensus 303 ~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 370 (588)
.....- .+ ...++..+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+
T Consensus 517 al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 596 (903)
T PRK04841 517 TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCA 596 (903)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 654211 11 1123334445566677777777766554432 1110 1112233344455556666666555
Q ss_pred ccCCC------C--CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 371 HEMPE------R--NSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 371 ~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
++... + ....+..+...+...|++++|...+++..
T Consensus 597 ~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 597 RKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54421 0 01122233344455555555555555543
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=8.6e-07 Score=75.80 Aligned_cols=126 Identities=18% Similarity=0.101 Sum_probs=66.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhh
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLH 494 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 494 (588)
..+-..+.-.|+-+....+...... ..+.+......++....+.|++.+|...+++.. .++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3334444445555555555444433 223334444445555555555555555555542 223555555555555555
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|+++.|...|.+++++.|++|.+.++++-.|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555555555555555443
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.75 E-value=0.0003 Score=70.83 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=128.9
Q ss_pred CCCChhhHHhhcccCC--CCChhhHHHHHHH--HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHH
Q 007818 24 ESKNLDYCTKILFNVQ--NPNSFSWNVAIRG--FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 99 (588)
..+++..|....+.+. .|+.. |..++.+ +.+.|+.++|..+++.... .+. .|..|...+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYG-LKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhcc-CCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 4567777777766654 44433 3334443 4678888888888877654 212 26667888888888888888888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCChh----HHHHHhccCCCCCcccHHHHHHHHHhC-CCh---------hHHH
Q 007818 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG----LACNVFDESCVRNLVSWNSLINGFVRS-GFP---------REAI 165 (588)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---------~~a~ 165 (588)
.++++..+.. |+......+..+|++.+++. .|.++++..++.-...|+ +++..... ... .-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHH
Confidence 8888888754 56777777777888876654 466666655443333343 34433322 122 2244
Q ss_pred HHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHHHHHH-HHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC
Q 007818 166 RLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHW-YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243 (588)
Q Consensus 166 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 243 (588)
+.++.+.+.+-+.. ..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44555544431111 1111111223445677888888883 333333344555556777888888888888877777755
Q ss_pred C
Q 007818 244 K 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 255 k 255 (932)
T KOG2053|consen 255 K 255 (932)
T ss_pred h
Confidence 4
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.4e-06 Score=90.53 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=145.9
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCCC--------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPER--------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 417 (588)
+...|-..+......++.++|.++.++.... -...|.++++.....|.-+...++|+++.+- --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455666777777778888888877776531 2346777777777777777788888888773 22234677
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhHHHHHHHHHHh
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA---DVVVWGALFFACRL 493 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~ 493 (588)
.|...|.+.+..++|.++++.|.++++ .....|..+++.+.+..+-+.|..++.++ ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 788888888888888888888888554 56777888888888888888888888765 2223 23344444445567
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.|+.+++..+|+..+.-.|.....|..+++.-.+.|+.+.++.+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 8888888888888888888888888888888888888888888888888777654
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=3.5e-07 Score=74.44 Aligned_cols=123 Identities=9% Similarity=-0.015 Sum_probs=101.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007818 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PM 477 (588)
Q Consensus 399 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 477 (588)
.++++..+. .|+. +......+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555553 4553 44567788899999999999999986 44557888999999999999999999999987 34
Q ss_pred CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 478 AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 478 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.| +...+..+..++...|++++|+..++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45 677888888899999999999999999999999999999888876643
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=2.1e-06 Score=87.73 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHH
Q 007818 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 455 (588)
++..+..|.....+.|++++|..+++...+. .|+.. ....+..++.+.+++++|....++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3556666666666677777777777766663 45443 455556666666777777776666665 333445556666
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 456 VDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
..++.+.|++++|.++|+++. ..| +...+..+..++...|+.++|...|+++++...+-...|
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 666667777777777776653 223 255666666666666777777777777766654433333
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.65 E-value=3.8e-07 Score=72.54 Aligned_cols=97 Identities=14% Similarity=-0.000 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+......+...+...|++++|..+|+-+. ..| +...|..+..++...|++++|+..|.++..++|+||..+.+++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35556677777889999999999999873 455 6778899999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhc
Q 007818 526 RDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (588)
...|+.+.|++.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 115
>PLN02789 farnesyltranstransferase
Probab=98.64 E-value=7.4e-06 Score=75.92 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=116.5
Q ss_pred ChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 362 NIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKA--LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 362 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
++++++..++++.+ ++..+|+.....+.+.|+. ++++.+++.+.+.. +-|..+|.....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555555443 2333444443344444442 55677777777653 345567777777777777788888888
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhc---CCh----HHHHHHHHh-CCCCC-CHhHHHHHHHHHHhh----CCHHHHHHH
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRS---GLL----EEAEQLIRS-MPMAA-DVVVWGALFFACRLH----GNVSIGERA 503 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----~~~~~A~~~ 503 (588)
+++.+. -+-+...|+.....+.+. |.. +++.++..+ +...| +...|..+...+... +...+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 887763 234455566555554443 222 345555533 34445 456677666666553 345668888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHccC------------------ChHHHHHHHHHHHhcCCccCCceeE
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRDSN------------------MWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
+.++...+|+++.++..|+++|.... ..++|.++++.+. ...|-+..+|
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 88888889999999999999998642 3477888888883 4555555554
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2.2e-06 Score=83.53 Aligned_cols=212 Identities=13% Similarity=0.004 Sum_probs=165.1
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC--CCCcchHHHHHHHHHhcCC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGK 393 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 393 (588)
..+...+...|-...|..+++++.. +..++.+|...|+..+|..+..+-. +|++..|-.+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 3455566677777788888775543 4567888999999888888876655 3677788888877777767
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+. .+....+|..+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888887754332 1122222234478899999999888763 34557788888888899999999999998
Q ss_pred hC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 474 SM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 474 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.. ...|+ ...|+++..+|.+.|+-.+|...+.++++-+-.+..+|.+..-+....|.|++|.+.+.++....
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 76 46675 66899999999999999999999999999998889999999999999999999999999997643
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=5.2e-06 Score=71.53 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=118.6
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
+-.|...|+++.+....+.+..+. ..+...++.++++..++...+.+ +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446777888877765554333221 01223567788888888887764 667778999999999999999999
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLL-GRSGL--LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
..+++..+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999873 345678888888864 67777 59999999987 3455 56788888888999999999999999999
Q ss_pred ccCCCCCchHH
Q 007818 509 ELDPQDSGIYV 519 (588)
Q Consensus 509 ~~~p~~~~~~~ 519 (588)
+..|.+..-..
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99987665443
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=2.2e-08 Score=57.53 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=24.4
Q ss_pred cccCcCCchhhHHHHhhcccCCCChhhHHhhcccCC
Q 007818 4 TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ 39 (588)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~ 39 (588)
+|++||..+||.||..|+ +.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~C--k~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYC--KAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHH--HCCCHHHHHHHHHhCc
Confidence 367777777777777777 7777777777777663
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=6.5e-06 Score=70.55 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
..+...+...|+-+....+....... ...+.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666665555553332 122333444456666667777777777777665 556666777777777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHH
Q 007818 462 SGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 462 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
.|++++|..-|.+. ...| ++...+.+.-.+.-.|+++.|..++..+....+.|+.+-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666554 3333 445556666666667777777777777776666677777777777777777777766654
Q ss_pred H
Q 007818 540 M 540 (588)
Q Consensus 540 ~ 540 (588)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=3.7e-06 Score=79.87 Aligned_cols=248 Identities=13% Similarity=0.026 Sum_probs=175.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
-+.+.|++.+|.-.|+..++.. +-+...|..|-......++-..|+..+++..+... .+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 3567788888888888877763 33556677777777777777778888877777642 356667778888888888888
Q ss_pred HHHHhccCCCCC-cchHHHHH---------HHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhccCCchHHHHH
Q 007818 366 ALQVFHEMPERN-SLTYTAII---------GGLALHGKALDAISYFSEM-IGVGLMPDEITFLGILSACCHGGLVDEGRK 434 (588)
Q Consensus 366 A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 434 (588)
|.+.++...... ...|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888877653211 00010000 1112222234445555444 445545788888888888889999999999
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.|+.+.. .-|-|...||.|.-.++...+.++|+..|+++ ..+|. +.++..+.-.|...|.+++|...|-.++.+.+
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999986 33456889999999999999999999999987 57786 55788888899999999999999999987665
Q ss_pred C-----C-----CchHHHHHHHHHccCChHHHHHH
Q 007818 513 Q-----D-----SGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 513 ~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
. + ..+|..|=.++.-.++.|-+.++
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4 1 24677776666667776644443
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.0002 Score=78.78 Aligned_cols=320 Identities=12% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HHHhCCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCC--C----CCCcc--hHHHHHHHH
Q 007818 123 VFVSCGDLGLACNVFDESCV----RNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--V----EPDEV--TMIGMVSAC 190 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~~--~~~~ll~~~ 190 (588)
.....|+++.+..+++.++. .+..........+...|+++++...+......- . .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456677766666665421 122333334445566778888877777664321 0 11111 112223344
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHhcCCC-----C----cchHHHHHHHHH
Q 007818 191 AQLEDLNLGREIHWYISESGLTLTV----PLANALMDMYVKCGKLESAEEIFDSMVNK-----T----VVSCTTMIVGYA 257 (588)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~ll~~~~ 257 (588)
...|+++.|...++.....-...+. ...+.+...+...|++++|...+.+.... + ......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5678888888888777653111121 23455666677788888888777766321 1 123344455667
Q ss_pred hcCCHHHHHHHhhhCCC----C---Cc----ccHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 007818 258 KFGFLDIARKIFDDLPE----K---YV----VPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPD--AVTTVHCLSAC 322 (588)
Q Consensus 258 ~~~~~~~a~~~~~~~~~----~---~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~ 322 (588)
..|+++.|...+++... . .. ..+..+...+...|++++|...+.+..... ..+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 78888888777665432 1 11 113344556677799999998888775531 1121 23344455567
Q ss_pred cccCChhHHHHHHHHHHHhCCCCc-chHH-----HHHHHHhHhcCChhHHHHHhccCCCCCcc-------hHHHHHHHHH
Q 007818 323 SQLGALDDGIWIHRFIEKENFNLN-VVLG-----TALVDMYAKCGNIAKALQVFHEMPERNSL-------TYTAIIGGLA 389 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~ 389 (588)
...|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....+... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999888877754311111 1101 11224455678899998888766543211 1345666788
Q ss_pred hcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 390 LHGKALDAISYFSEMIGV----GLMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
..|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999988887653 322221 35556667788899999999999888774
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.4e-05 Score=66.51 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=119.2
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYT---AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
|..++-+....|+.+.|...++.+...-+.++. .-...+-..|++++|+++++.+.+.. +.|..++..-+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 444555556667777777777765532122221 11223455788899999999888875 55566676666666677
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhC---CHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHG---NVSIGE 501 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~A~ 501 (588)
|..-+|++-+....+ .+..|...|..+...|...|++++|.-.++++. ..| ++..+..+...+.-.| +.+.|.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888888 677889999999999999999999999999874 445 5556666666644333 677888
Q ss_pred HHHHHHhccCCCCCchHHHH
Q 007818 502 RAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l 521 (588)
+.|.+++++.|.+...+.-+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999999665555443
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=1.9e-06 Score=69.87 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
......++..+...|++++|.+.++.+. ..| +...+..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3445556666777777777777776652 233 45566666666777777777777777777777777777777777777
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 007818 527 DSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~ 545 (588)
..|++++|.+.+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 7888888888777776643
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=7.6e-06 Score=69.48 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=132.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
|..++-+....|+.+.|...++++... ++.+......-..-+...|.+++|.++++.+.++ -+.|..++..-+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHH
Confidence 445666777889999999999999886 3333333333333455679999999999999985 3556677776677777
Q ss_pred hcCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC---ChHHHH
Q 007818 461 RSGLLEEAEQLIRSM--PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN---MWEEAG 535 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 535 (588)
..|..-+|++-+... .+-.|...|..+...|...|++++|.-.+++++=..|.++..+..++.++.-.| +.+-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788888888777665 245699999999999999999999999999999999999999999999988766 677899
Q ss_pred HHHHHHHhcCCccCCc
Q 007818 536 KVRKMMEERGVEKTPG 551 (588)
Q Consensus 536 ~~~~~~~~~~~~~~~~ 551 (588)
+++.+..+...+...+
T Consensus 212 kyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHhChHhHHH
Confidence 9999998876544433
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=2.1e-05 Score=81.47 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=84.1
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+...|... +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 344455555555555555555555442 2344455555555555 555555555544432 333
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
.+++..+.++|.++.. ..+.+...+..+.+.....-.+ .--..++..+...|...+++++++.+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~------------~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF------------TRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445555555555554 2223333333333222211111 1223445556667778889999999999
Q ss_pred HHhccCCCCCchHHHHHHHHH
Q 007818 506 KLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~ 526 (588)
.+++.+|.|..+..-++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999887
No 126
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=2.1e-05 Score=72.91 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=139.2
Q ss_pred HHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-
Q 007818 354 VDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHG-KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL- 428 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 428 (588)
-..+...++.++|+....++.+. +..+|+.....+...| ++++++..++++.+.. +.+..+|......+.+.|+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33444566778888888877653 3345555555666667 5799999999999864 4445567665555555565
Q ss_pred -hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh---CC----HH
Q 007818 429 -VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH---GN----VS 498 (588)
Q Consensus 429 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~----~~ 498 (588)
.+++..+++++.+ .-+-+..+|.....++.+.|+++++++.++++. ..| +...|......+... |. .+
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888988886 445678889999999999999999999999883 333 566777776665544 22 25
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 545 (588)
.++....++++.+|+|..+|+.+..++.. .++..+|.+...++.+.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 67888889999999999999999999988 355677888888876644
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.7e-06 Score=80.77 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=156.8
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
+|--..-..+...+...|-...|..+++++. .|-.++..|+..|+..+|..+..+..+. +|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 4444555677888899999999999998764 5777888999999999999999888873 89999999999888
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- ...| ...+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888888999988877552 1222333345689999999999864 5555 6778988888889999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
..|...+.++|++...|+++..+|.+.|+..+|...+++..+-+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999998876
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=3.1e-05 Score=72.49 Aligned_cols=112 Identities=21% Similarity=0.143 Sum_probs=54.4
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
..|++++|+..++.+.. ..+.|+..+....+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34455555555555444 33333444444444555555555555555544 23343 3344444445555555555555
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
.+......+|+||..|..|+.+|..+|+..+|....
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555555555555555555555544444444333
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=3.7e-05 Score=80.51 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=129.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCC-Ccc-cHHHH
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNK--------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEK-YVV-PWNAI 283 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~l 283 (588)
+...|-..|......++.++|.++.++.... -...|.++++.-..-|.-+...++|+++.+. ++. .|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456666677777777777777777776432 2346777777766667777777777776552 222 26777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHhHhcCC
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 362 (588)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-++ -......-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777765 3345556666777777777777777777666655322 123334445555566777
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007818 363 IAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413 (588)
Q Consensus 363 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 413 (588)
.+++..+|+.... +-...|+..++.-.++|+.+.+..+|++....++.|-.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 7777777776653 24556777777777777777777777777776665543
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=1.4e-05 Score=71.96 Aligned_cols=182 Identities=15% Similarity=0.005 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC-C-cchHHHHHHHHhHhcCChhHHHHHhccCCC--CC-cc---hH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-L-NVVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-SL---TY 381 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~~ 381 (588)
.....+......+...|+++.|...++.+...... | ....+..+..++...|++++|...++++.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777888889999999999999999876432 1 124567788999999999999999999864 32 22 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 382 TAIIGGLALH--------GKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 382 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
..+..++... |++++|.+.++.+... .|+.. ....+... ..+... . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~----~-~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR----L-AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH----H-HHHH
Confidence 5556666654 7889999999999875 45432 22211111 111100 0 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC----CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMP----MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
..+...|.+.|++.+|...+++.. ..| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356677888899999988888762 223 345778888888889999999988887776655
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00013 Score=62.72 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=77.6
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCch
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH----GGLV 429 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 429 (588)
...|+..|++++|++...... +....-.=...+.+..+.+-|.+.+++|.+- -+..|.+.+..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344556666666666655522 2222222233344555566666666666552 244455545444432 3345
Q ss_pred HHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHhHHHHHHHHHHhhC-CHHHHHHHHHH
Q 007818 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM--AADVVVWGALFFACRLHG-NVSIGERAAMK 506 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 506 (588)
..|.-+|+++.+ +.+|++.+.+..+-+....|++++|..++++.-. ..++.++..++-.....| +.+--.+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666655 4456666666666666666666666666655421 123444444443333333 23333445555
Q ss_pred HhccCCCCC
Q 007818 507 LLELDPQDS 515 (588)
Q Consensus 507 ~~~~~p~~~ 515 (588)
+....|.++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555555544
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=4e-07 Score=52.30 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
|+.||..+|+.||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=7.9e-06 Score=77.23 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=99.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 492 (588)
....++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++.- ..| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455666777778888899998888874 244 44557788878888888888887763 334 5666666667788
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+.++++.|..+.+++.+..|++-..|..|+.+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888763
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=1.2e-05 Score=65.13 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=90.1
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007818 400 YFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PM 477 (588)
Q Consensus 400 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 477 (588)
.+++.... .|+ ......+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|..++++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 443 345666777888899999999999998873 3556788888999999999999999999876 33
Q ss_pred CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 478 AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 478 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
.| +...+..+...+...|++++|...++++++..|+++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 566777778888999999999999999999999876544
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0001 Score=63.33 Aligned_cols=247 Identities=15% Similarity=0.057 Sum_probs=153.5
Q ss_pred CcccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC
Q 007818 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78 (588)
Q Consensus 1 ~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 78 (588)
|.+.+..|+...||.==.+| .|++..++..-+... +.+...-.-+-++|...|.+...+. .+.. . ..|.
T Consensus 1 m~~~~~g~~d~LF~iRn~fY----~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~-~~~~ 71 (299)
T KOG3081|consen 1 MSSMEAGPEDELFNIRNYFY----LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-G-KATP 71 (299)
T ss_pred CCccccCcchhHHHHHHHHH----hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-c-cCCh
Confidence 33445556655554332233 688888887765543 2344444556678888887755433 2222 1 1222
Q ss_pred cccHHHHHHHHHccCChhh-HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHh
Q 007818 79 NFTYPLLFKVCASLGLRFL-GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157 (588)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 157 (588)
......+......-++.+. ..++.+.+.......+......-...|...|++++|++.+.... +......=...+.+
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHH
Confidence 2223333333333333332 33455555554444443444444567888999999999998843 33344334556777
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ----LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
..+++-|.+.+++|.+- -+..|.+.|..++.+ .+....|.-+|+++-+. .+|++.+.+..+.++...|++++
T Consensus 150 ~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 88899999999999863 466788878777754 34677888888888765 67788888999999999999999
Q ss_pred HHHHHHhcCCCC---cchHHHHHHHHHhcCCH
Q 007818 234 AEEIFDSMVNKT---VVSCTTMIVGYAKFGFL 262 (588)
Q Consensus 234 A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 262 (588)
|..+++....++ +.+...++.+....|..
T Consensus 226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 999999886653 44444444444444443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=7.8e-05 Score=69.85 Aligned_cols=143 Identities=16% Similarity=0.058 Sum_probs=103.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDL 458 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 458 (588)
+-.....+...|++++|+..++.+++. .|+.. ........+.+.++.++|.+.++++... .|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333444556678888888888888775 44444 4455566788888888888888888863 344 5556677888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 459 LGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
|.+.|++.+|..++++.. .+.|+..|..+..+|...|+..++... .+..|+..|++++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 888888888888888763 234677888888888888886655443 5566777888888888
Q ss_pred HHHHHHhcC
Q 007818 537 VRKMMEERG 545 (588)
Q Consensus 537 ~~~~~~~~~ 545 (588)
.+....++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 888776654
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=2.5e-05 Score=73.96 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=107.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
.....|+..+...++++.|..+++++.+.++.....++..+...++-.+|++++++..+.. +-+......-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777788999999999999998888888889999999999999999999988753 445556666677788999
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (588)
+++.|..+.+++.. -.|.+..+|..|+.+|...|++++|+-.++.++..
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999997 44555789999999999999999999999999733
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00017 Score=74.15 Aligned_cols=142 Identities=11% Similarity=0.095 Sum_probs=110.5
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
...+...+..|.....+.|.+++|..+++...+ | +......++..+.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344577788888899999999999999998874 4 34567778888999999999999999998863 3344566677
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGAL 487 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 487 (588)
..++.+.|++++|..+|+++.. ..+.+...+..+..++...|+.++|...|++.. ..|....++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 7788899999999999999987 334557888889999999999999999998873 23444444433
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.28 E-value=2.3e-06 Score=59.68 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=60.6
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC-ChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN-MWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 545 (588)
++..|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888889999999999999999999999999999999999999999 7999999999987643
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=4.6e-05 Score=62.33 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=69.2
Q ss_pred CCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCH----hHHHHHHHHHHhhCCH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSMPMA-ADV----VVWGALFFACRLHGNV 497 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~ 497 (588)
.++...+...++.+.+. .+.+ ....-.+...+...|++++|.+.|+.+... |+. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 56666666666776664 2222 222334556666777777777777766321 332 2334455566677777
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
++|+..++.. ...+-.+..+..++.+|.+.|++++|++.|+..
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777552 233335666777888888888888888887754
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=1.8e-06 Score=62.99 Aligned_cols=78 Identities=23% Similarity=0.195 Sum_probs=50.6
Q ss_pred cCChHHHHHHHHhCC-CCC---CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 462 SGLLEEAEQLIRSMP-MAA---DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356666666666552 112 334455566667777777777777777 666666666777778888888888888888
Q ss_pred HHH
Q 007818 538 RKM 540 (588)
Q Consensus 538 ~~~ 540 (588)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 775
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=2.4e-05 Score=61.75 Aligned_cols=95 Identities=15% Similarity=0.043 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLA 522 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 522 (588)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666777777777776652 1222 2345556666777777777777777777776664 44567777
Q ss_pred HHHHccCChHHHHHHHHHHHhcC
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++.+.|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776653
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=4.7e-06 Score=57.26 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=52.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.++++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567889999999999999999999999999999999999999999999999997654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=0.00016 Score=59.17 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPD---EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCM 455 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 455 (588)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|. ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33444444 3677788877888877753 222 123444556777888888888888888875 32222 1234456
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
...+...|++++|+..++..... ..+..+......+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77788888888888888776433 345556666777888888888888888763
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=2.8e-05 Score=58.46 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+..++..+...|++++|.++++++. ..| +...+..+...+...|++++|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4566777888889999998888763 334 34567777777888899999999999999999988889999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 007818 530 MWEEAGKVRKMMEERG 545 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~ 545 (588)
++++|.+.++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998886543
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00082 Score=70.06 Aligned_cols=238 Identities=8% Similarity=0.012 Sum_probs=146.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc-HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
+.+...+..|+..+...+++++|.++.+...+ ..|+... |..+...+.+.++...+..+ .+... .+...-++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~ 100 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWA 100 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchh
Confidence 56777899999999999999999999998777 5566543 33333355566776666555 33322 12221222
Q ss_pred HHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhH
Q 007818 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 198 (588)
.+-..|...+++ ..+..++-.+..+|-+.|+.+++..+++++.+.. +-|....+.+...++.. ++++
T Consensus 101 ~ve~~~~~i~~~-----------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 101 IVEHICDKILLY-----------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHHHHHHHHhh-----------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222222222221 1233467778888999999999999999998876 55677788888888888 9999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhC-CCCCc
Q 007818 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL-PEKYV 277 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~ 277 (588)
|.+++...+.. +....++..+.+++.++...++.-+..++....+.. ..+ ....+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~---------~~~~~~~~~ 223 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL---------GHREFTRLV 223 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH---------hhhccchhH
Confidence 99888776655 556667778888777776654443333222211100 000 01112
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007818 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322 (588)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 322 (588)
.++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHH
Confidence 234445556666777777777777777653 22444444555544
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.0097 Score=56.94 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC---ChhHHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 007818 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG---NIAKALQVFHEMP----ERNSLTYTAIIGGLALHGKALDAISYF 401 (588)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 401 (588)
+++..+++.....-...+..+|..+.+.--..- +.+.....++++. ..-..+|-..++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555444333334444444433221111 2444555555544 234457888888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC---
Q 007818 402 SEMIGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM--- 477 (588)
Q Consensus 402 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 477 (588)
.+.++.+..+ +......++..+| ++|.+-|.++|+.-.++ +..++..-...++.+...++-..|..+|++...
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988777 5556777777665 57789999999998884 445556667888999999999999999998842
Q ss_pred CC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHccCChHH
Q 007818 478 AA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD----SGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 478 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~ 533 (588)
.| ....|..++.--..-|+...+.++-++.....|.+ ...-.....-|.-.+.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 33 35689999988889999999999988887766622 1123344555555555443
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=6.1e-06 Score=48.34 Aligned_cols=35 Identities=40% Similarity=0.770 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 007818 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180 (588)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (588)
.+||+++.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988873
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.1e-05 Score=65.50 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=89.7
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHh-hC--CHHHHHHHHHHHhccCCCCCchHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMA-ADVVVWGALFFACRL-HG--NVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
+-|...|..|...|.+.|++..|..-|.+. ... +++..+..+..++.. .| ...++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567899999999999999999999999877 344 456677777777433 23 5678999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCccCCce
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 552 (588)
|+..++..|++.+|...|+.|.+...+.++..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999998876655543
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.019 Score=58.53 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=86.9
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH--ccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA--SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
....+++..|+.....+.++. |+.. |..+++++. +.|..++|..+++.....+.. |..|...+-.+|.+.++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 455678888888888887743 5543 444555544 888888898888877765543 777888888888889999
Q ss_pred hHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh
Q 007818 131 GLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191 (588)
Q Consensus 131 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 191 (588)
++|..+|++... |+......+..+|.+-+++.+-.++--+|-+ ..+-+...+-.++....
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 999999988654 4444444556667777666543333222222 23445555555555543
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.1e-06 Score=47.39 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 007818 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178 (588)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (588)
.+|+.++.++.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 568888888888888888888888888888776
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=0.00011 Score=57.98 Aligned_cols=106 Identities=8% Similarity=0.011 Sum_probs=72.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCC-CCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRL-SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALF 488 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 488 (588)
++......+.+.|++++|...++.+.....- +.....+..++.++.+.|++++|.+.++.+. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566667777888888888777764211 1113455667777888888888888887763 2232 44566777
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
.++...|+.++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77888888889999999998888887655443
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=6.3e-05 Score=71.65 Aligned_cols=108 Identities=13% Similarity=-0.000 Sum_probs=90.2
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 496 (588)
-...+...|++++|++.|+++.+. .+.+...|..+..+|...|++++|+..++++ ...| +...+..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999973 3456788888999999999999999999987 3445 56788888888999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
+++|+..++++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988887776664443
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.0058 Score=60.09 Aligned_cols=210 Identities=12% Similarity=0.044 Sum_probs=119.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHH------HHHHHccCChhhHHHHHHHHHHhcCCCC
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL------FKVCASLGLRFLGYEIFGHVLKLGFDVD 113 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (588)
.|.+..|..+...-...-.++-|...|-+...-.|++.-...-... ...-+--|.+++|++++-.+-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 6777788888777776667777777776654423332211100000 0111223677888888777665442
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVR-----NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 188 (588)
.+..+.+.|++-...++++..... -..+|+.+...+.....|++|.+.|..-... ...+.
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 355667778888888888764322 1246777777777777888887777653211 12344
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 007818 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268 (588)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 268 (588)
++.+...+++-+.+... ++.+....-.+.+++.+.|.-++|.+.+-+.-.|. ..+..|...+++.+|.++
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 45544444443333222 34455566667777777777777766665443332 234445555666666666
Q ss_pred hhhCCCCCc
Q 007818 269 FDDLPEKYV 277 (588)
Q Consensus 269 ~~~~~~~~~ 277 (588)
-+...-+.+
T Consensus 901 aq~~~l~qv 909 (1189)
T KOG2041|consen 901 AQRFQLPQV 909 (1189)
T ss_pred HHhccchhH
Confidence 655544433
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.97 E-value=2.8e-05 Score=54.93 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=53.2
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
..+.+.++++.|..+++++++.+|+++..+...+.++.+.|++++|.+.++++.+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577899999999999999999999999999999999999999999999999987654
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.9e-05 Score=46.20 Aligned_cols=34 Identities=38% Similarity=0.762 Sum_probs=29.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 412 (588)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.95 E-value=0.00011 Score=59.13 Aligned_cols=92 Identities=14% Similarity=0.024 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
......-+...|++++|..+|+-+. ..| +...|..+..++...+++++|+..|..+..+.++||....+.+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344555678999999999999773 333 66678888888899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 007818 530 MWEEAGKVRKMMEE 543 (588)
Q Consensus 530 ~~~~A~~~~~~~~~ 543 (588)
+.++|+..|+.+.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998877
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=7.4e-05 Score=65.60 Aligned_cols=107 Identities=18% Similarity=0.089 Sum_probs=69.9
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 500 (588)
+.+.+++.+|+..|.++++ -.+-+...|..-..+|.+.|+++.|.+-.+.. ...|. ..+|..+..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456677777777777765 22334555555666777777777777666654 34553 45777777777777888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
++.|+++++++|++......|-++-.+.+..
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 8888888888887776666665554444433
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=1.2e-05 Score=55.91 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=47.8
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999887654
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.00014 Score=61.63 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
...+..++..+...|++++|...|++.. ..|+ ...+..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3456666777777788888888877652 2221 3567777778888899999999999999999988888888898
Q ss_pred HHHccCC--------------hHHHHHHHHHHHhcC
Q 007818 524 MYRDSNM--------------WEEAGKVRKMMEERG 545 (588)
Q Consensus 524 ~~~~~g~--------------~~~A~~~~~~~~~~~ 545 (588)
++...|+ +++|.+++++....+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888777 466666666665543
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=4.2e-05 Score=67.07 Aligned_cols=91 Identities=20% Similarity=0.133 Sum_probs=80.1
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
.-+.+.+++++|+..|.++ ...| ++..|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999887 4666 6777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc
Q 007818 535 GKVRKMMEERGVE 547 (588)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (588)
.+.|++.++....
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 9999988765433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00041 Score=63.70 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=101.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA-CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 367788888888888999999999998643 3345556555555 3335777789999999998 45677888999999
Q ss_pred HHHhcCChHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 458 LLGRSGLLEEAEQLIRSMPMA-AD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.+...|+.+.|+.+|++.... |. ...|...+.--.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987422 33 34888888888899999999999999999888744
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.7e-05 Score=45.12 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 411 (588)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00029 Score=67.21 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=81.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.....+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++... .+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 34556778899999999999999864 445668888888999999999999999999874 344677888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHhHHHHHH
Q 007818 463 GLLEEAEQLIRSM-PMAADVVVWGALF 488 (588)
Q Consensus 463 g~~~~A~~~~~~~-~~~~~~~~~~~l~ 488 (588)
|++++|...|+++ ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999886 3556544444443
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0029 Score=51.52 Aligned_cols=132 Identities=12% Similarity=0.001 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHhHH
Q 007818 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA---DVVVW 484 (588)
Q Consensus 409 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 484 (588)
..|+..--..+..+..+.|+..+|...|++...- -+..|......+.++....+++..|...++.+. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677776777888888889999999999888873 445667778888888888899999988888762 222 34455
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
..+.+++...|.+..|+..|+.++.-.| ++..-...+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5667778888999999999999998888 57777778888888898777766555443
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00023 Score=60.06 Aligned_cols=93 Identities=13% Similarity=-0.066 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
...+..++..+...|++++|...|++.. ..| ...++..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777778888899999998888762 222 23477888888999999999999999999999998888888888
Q ss_pred HHH-------ccCChHHHHHHHHHH
Q 007818 524 MYR-------DSNMWEEAGKVRKMM 541 (588)
Q Consensus 524 ~~~-------~~g~~~~A~~~~~~~ 541 (588)
++. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666554
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00065 Score=57.48 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD--EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 455 (588)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566677778888888888888888876533332 356777888888899999999999888863 23346667777
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
..+|...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 77888877766655433321 123677889999999999876 444444444333
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.001 Score=61.15 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=115.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHH-------------H
Q 007818 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH-------------Y 452 (588)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 452 (588)
..+.-.|++++|.+.--...+.. ..+......-..++.-.++.+.+...|++.... .|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHH
Confidence 34667889999988877776643 222222222223445677888999998888743 444221 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCC-----CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSM-PMA-----ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
..=..-..+.|++.+|.+.+.+. .+. |+...|.....+..+.|+..+|+.-...+++++|.-..++..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22233456889999999999876 333 455667777777889999999999999999999988888999999999
Q ss_pred ccCChHHHHHHHHHHHhcCCc
Q 007818 527 DSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~~~ 547 (588)
-.++|++|.+.++...+...+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999876544
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.77 E-value=1.7e-05 Score=45.51 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=31.1
Q ss_pred HHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00038 Score=52.07 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 496 (588)
+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333444455555555555555432 12223444445555555555555555555431 122 22345555555556666
Q ss_pred HHHHHHHHHHHhccCC
Q 007818 497 VSIGERAAMKLLELDP 512 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p 512 (588)
++.|...+.++++..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666665555
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=0.00011 Score=53.38 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC-ChHHHHHHHHHHHhcCChHHHH
Q 007818 392 GKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-KLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++... ..| +......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~----~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK----LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT----HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555543211 122233334555555555555555555411 111 1233333344555555555555
Q ss_pred HHHH
Q 007818 470 QLIR 473 (588)
Q Consensus 470 ~~~~ 473 (588)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00011 Score=50.34 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 455 MVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
++..+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999998887 3445 566788888888899999999999999999999864
No 173
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.71 E-value=0.045 Score=51.34 Aligned_cols=134 Identities=11% Similarity=0.052 Sum_probs=94.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
..+|-..+..-.+..-.+.|..+|-+..+.| +.++...++.++..++ .|+...|..+|+.-.. .++.+...-+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 4456666777677777888888888888887 5566667777777554 4677888888887776 3333444445666
Q ss_pred HHHHhcCChHHHHHHHHhCC--CC--CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 457 DLLGRSGLLEEAEQLIRSMP--MA--ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
..+.+.++-..|..+|+... .. .-...|..++.--..-|+...+..+-+++.++.|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77778888888888888542 11 224567777777777888888888888888877753
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0017 Score=64.77 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.++++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445666666666666666666 3555666666666666666666666666544
No 175
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.054 Score=50.99 Aligned_cols=237 Identities=10% Similarity=0.037 Sum_probs=132.3
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHcccCChhHHHHHHHHHHHhCCCC----cchHHHHHHHHhHhcCChhHHHHHhcc
Q 007818 298 ALFHEMQATGIKPDAVTT-VHCLSACSQLGALDDGIWIHRFIEKENFNL----NVVLGTALVDMYAKCGNIAKALQVFHE 372 (588)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (588)
.+++.....-+.|+.... ..+...+.. +.+++..+.+.+....+.+ =..++..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333334445553322 233333333 4555555554444332211 134566777777888888888777765
Q ss_pred CC--CCCcc-------hHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHhccCCc-hHHHHH
Q 007818 373 MP--ERNSL-------TYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEI-TFLGIL---SACCHGGL-VDEGRK 434 (588)
Q Consensus 373 ~~--~~~~~-------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~---~~~~~~~~-~~~a~~ 434 (588)
+. +|+.. +-..+-+..+. .-+...-+.+|+......+ |.. ....++ .-+.+.|. -++|.+
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 54 33222 11122222321 1123334555666555432 322 222222 33455565 788999
Q ss_pred HHHHhhhhcCCCCChHHHHHHH----HHHHhc---CChH---HHHHHHHhCCCCC----CHhHHHHHHHH--HHhhCCHH
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMV----DLLGRS---GLLE---EAEQLIRSMPMAA----DVVVWGALFFA--CRLHGNVS 498 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~ 498 (588)
+++.+.+- -+-|..+-+.+. .+|... ..+. +-...+++....| +...-+.+..| +..+|++.
T Consensus 402 LLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 402 LLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 98888762 223444333322 222221 1122 2233344444443 34455666666 46899999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
++.-...-+.+..| ++.+|..++-++....+|++|.+++..+
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999 8999999999999999999999999865
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.003 Score=58.36 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=52.3
Q ss_pred HHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhcc
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH-GKALDAISYFSEMIGV----GLMPD--EITFLGILSACCH 425 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 425 (588)
.+..|...|++..|-+.+. .+...|... |++++|++.|++..+. | .+. ..++..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 3344555666665554433 244555555 6666666666654431 2 111 1244555556666
Q ss_pred CCchHHHHHHHHHhhhhcCCC-----CChH-HHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 426 GGLVDEGRKYFAQMSSIFRLS-----PKLK-HYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.|++++|.++|+++... ... .+.. .+...+-++...|+...|.+.+++.
T Consensus 168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666543 111 1111 1222333445556666666666654
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.0028 Score=53.42 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD--EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
..|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...+++.... .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3455666666777777777777777765432221 235666677777777777777777777653 223344455555
Q ss_pred HHHH
Q 007818 457 DLLG 460 (588)
Q Consensus 457 ~~~~ 460 (588)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=8e-05 Score=41.98 Aligned_cols=30 Identities=33% Similarity=0.667 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 007818 147 SWNSLINGFVRSGFPREAIRLFRDMQLERV 176 (588)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 176 (588)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888777653
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0027 Score=63.43 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=103.2
Q ss_pred CCCCcchHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccC--------CchHHHHHHHHHh
Q 007818 374 PERNSLTYTAIIGGLAL--HG---KALDAISYFSEMIGVGLMPDE-ITFLGILSACCHG--------GLVDEGRKYFAQM 439 (588)
Q Consensus 374 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 439 (588)
...+...|...+++... .+ +...|..+|++..+. .|+. ..+..+..++... +++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34577889888887543 33 377899999999985 5664 4566555544322 1233444444443
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
......+.++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 332123445677888877777889999999999987 46788889999999999999999999999999999998874
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.00083 Score=49.76 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhhHH
Q 007818 149 NSLINGFVRSGFPREAIRLFRDMQLERV-EPDEVTMIGMVSACAQLE--------DLNLGREIHWYISESGLTLTVPLAN 219 (588)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 219 (588)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. +....+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999887654 2446778899999999999999999
Q ss_pred HHHHHHHh
Q 007818 220 ALMDMYVK 227 (588)
Q Consensus 220 ~l~~~~~~ 227 (588)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.064 Score=49.45 Aligned_cols=273 Identities=16% Similarity=0.099 Sum_probs=176.6
Q ss_pred CCHHHHHHHhhhC---CCCCcccHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCChhHHH
Q 007818 260 GFLDIARKIFDDL---PEKYVVPWNAIIGGY--VQAKRSKEALALFHEMQATGIKPDAV--TTVHCLSACSQLGALDDGI 332 (588)
Q Consensus 260 ~~~~~a~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~ 332 (588)
|+-..|.++-.+. ...|..+.-.++.+- .-.|+++.|.+-|+.|... |... .+..|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 3444444443332 223444444444433 3468888888888888763 3322 2333444445778888888
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC-----CCCcc--hHHHHHHHH---HhcCChHHHHHHHH
Q 007818 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-----ERNSL--TYTAIIGGL---ALHGKALDAISYFS 402 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~a~~~~~ 402 (588)
.+-+..-..-. .-.....+.+...+..|+++.|+++++.-. +++.. .--.|+.+- .-..+...|...-.
T Consensus 175 ~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 87776655432 234567788888999999999999887654 23322 111222211 11234666666666
Q ss_pred HHHHCCCCCCHHH-HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 007818 403 EMIGVGLMPDEIT-FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM----PM 477 (588)
Q Consensus 403 ~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 477 (588)
+..+ +.|+... -.....++.+.|+..++-.+++.+.+. .|.+.++..++ +.+.|+. +..-+++. ..
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhc
Confidence 6555 4677653 334467889999999999999999865 56666554333 3466653 33333332 13
Q ss_pred CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc-CChHHHHHHHHHHHhcCC
Q 007818 478 AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS-NMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 478 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 546 (588)
+| +..+...+..+....|++..|..-.+.+....| ...+|..|+++-... |+-.++...+.+..+..-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 44 566777778888899999999999999999999 467888888887655 999999999999887643
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.0076 Score=53.89 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+..-|.+.|.+..|+.-++.+++.-|+. +.++..+..+|...|..++|.++...+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4455788999999999999999988874 44577788999999999999998887643
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.0015 Score=50.50 Aligned_cols=89 Identities=20% Similarity=-0.003 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC---CCchHHHHHHHH
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSMP---MA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ---DSGIYVLLANMY 525 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~---~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 525 (588)
.+..++-..|+.++|..+|++.. .. + ....+..+.+++...|++++|..++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556666777777777776652 11 1 1335566777777778888888888888777776 555566667777
Q ss_pred HccCChHHHHHHHHHHH
Q 007818 526 RDSNMWEEAGKVRKMME 542 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~ 542 (588)
...|++++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78888888887766554
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.0093 Score=55.09 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=87.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-CchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHH
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-GLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDL 458 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 458 (588)
.+..|...|++..|-..+ ..+...|... |++++|.+.|++..+.+..... ..++..++..
T Consensus 100 A~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344555555555554444 4455567777 8999999999998765322222 3556778889
Q ss_pred HHhcCChHHHHHHHHhCC---CC-C----CHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--C---chHHHHHHH
Q 007818 459 LGRSGLLEEAEQLIRSMP---MA-A----DVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQD--S---GIYVLLANM 524 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~---~~-~----~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~---~~~~~l~~~ 524 (588)
+.+.|++++|.++|++.. .+ + +.. .+...+-.+...||...|...+++.....|.= + .....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 999999999999999762 11 1 121 23333445667899999999999999998852 2 234455555
Q ss_pred HHc--cCChHHHHHHHHHH
Q 007818 525 YRD--SNMWEEAGKVRKMM 541 (588)
Q Consensus 525 ~~~--~g~~~~A~~~~~~~ 541 (588)
+-. ...+++|..-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 543 23455555555443
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.069 Score=49.74 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHH
Q 007818 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 218 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 297 (588)
.+..+.-+...|+...|.++-.+..=++..-|-..+.+++..++|++-.++-.. +..+..|..++..|.+.|+..+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 344455555566666666666666555666666666666666666655554432 334455555566665555555555
Q ss_pred HHHHH
Q 007818 298 ALFHE 302 (588)
Q Consensus 298 ~~~~~ 302 (588)
.++..
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 55543
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00017 Score=40.58 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVG 408 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 408 (588)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0014 Score=60.29 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEEAEQLIRSMP--MAADVVVWGALFFA 490 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 490 (588)
.+|..++...-+.+..+.|+.+|.++.+ .-..+..+|...+..-.. .++.+.|.++|+..- ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677788888888889999999999986 333455666666666444 567777999999873 34577889999998
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...|+.+.|..+|++++..-|.+. .+|..++..-.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877644 58999999999999999999999999765
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.14 Score=51.40 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=74.8
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
.+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-.++-+... .+.-|..+..+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3445555566677888888888888887887777777778888887776655544322 2556677777888888
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 472 (588)
+.++|..++-+.... .....+|.+.|++.+|.++-
T Consensus 759 n~~EA~KYiprv~~l----------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL----------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCCh----------HHHHHHHHHhccHHHHHHHH
Confidence 888888777666421 14566777777777776654
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.0048 Score=50.25 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=95.7
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-- 513 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-- 513 (588)
..+.....|+...-..|..++.+.|+..+|...|++.- ..-|...+..+..+....+++..|...++++.+.+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 33333556888888889999999999999999999873 4468889999999999999999999999999999985
Q ss_pred CCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCce
Q 007818 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552 (588)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 552 (588)
.|.....++++|...|++.+|...|+.+..--..+...+
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~ 197 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI 197 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence 677888999999999999999999999987654444333
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.43 E-value=0.0017 Score=54.71 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=83.0
Q ss_pred CCCcccHHHHHHHHH-----ccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHH
Q 007818 76 RPDNFTYPLLFKVCA-----SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150 (588)
Q Consensus 76 ~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 150 (588)
..+..+|..++..+. +.|.++-....+..|.+-|+..|..+|+.|++++=+ |.+- -..+ +.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~-----------fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF-----------FQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH-----------HHH
Confidence 356667777777665 557888888999999999999999999999998753 3321 0111 111
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh-hHHHHHHHHHHH
Q 007818 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL-NLGREIHWYISE 208 (588)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 208 (588)
+.-.| -.+-+-|++++++|...|+.||..|+..++..+++.+.. .+..++.-.|.+
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111 134467999999999999999999999999999887653 344444444444
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.0002 Score=49.59 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=28.9
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
+.|++++|.++|+.+... .+.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666666653 2334555556666666666666666666665
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.43 E-value=0.016 Score=56.62 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 390 (588)
+..+...+...+-+...+..|.++|..+-+. ..+++.....+++.+|..+-+..++--...|..-.+-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 4445555555566677788888888877654 5678888999999999999988886333333333333333
Q ss_pred cCChHHH
Q 007818 391 HGKALDA 397 (588)
Q Consensus 391 ~~~~~~a 397 (588)
..++++|
T Consensus 817 ~DrFeEA 823 (1081)
T KOG1538|consen 817 NDRFEEA 823 (1081)
T ss_pred hhhHHHH
Confidence 3333333
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.42 E-value=0.0016 Score=58.62 Aligned_cols=97 Identities=8% Similarity=0.041 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-CHhHHHHH
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAA-DVVVWGAL 487 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l 487 (588)
|...+....+.|++++|...|+.+.+.+ |-+ +..+..++.+|...|++++|...|+.+. ..| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4443433344566666666666665532 111 2344455555555555555555555442 111 12233333
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
+..+...|+.++|...++++++..|++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 444444555555555555555555543
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.42 E-value=0.00072 Score=63.88 Aligned_cols=65 Identities=15% Similarity=-0.024 Sum_probs=56.4
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG---IYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...+..+..++...|++++|+..++++++++|+++. +|++++.+|..+|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678888888888999999999999999999998874 4889999999999999999999998875
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00027 Score=43.67 Aligned_cols=42 Identities=36% Similarity=0.442 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.++..+..++...|++++|+++++++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999999888864
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.015 Score=56.77 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 295 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+.+.-+++++++|-.|+.... ...|+-.|.+.+|-++|.+- |.. +..+.+|....-++.|.+++....
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 344445666666666665432 33445566666666665422 211 233344444444444444443322
Q ss_pred C--------------CCcchHHHHHHHHHhcCChHHHHHHHHH------HHHCC--C-CCCHHHHHHHHHHhccCCchHH
Q 007818 375 E--------------RNSLTYTAIIGGLALHGKALDAISYFSE------MIGVG--L-MPDEITFLGILSACCHGGLVDE 431 (588)
Q Consensus 375 ~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~--~-~p~~~~~~~l~~~~~~~~~~~~ 431 (588)
. .+..--.+-...+...|+.++|..+.-+ +.+-+ + ..+..+...+...+.+...+.-
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 1 0111112334445555666555544311 11111 1 2233455555556666667777
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
|.++|.++-. ...+++.....+++.+|..+-++.+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 7788777754 2456777788888888888888775
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0024 Score=47.37 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CCCcccHHHHHHHHHccC--------ChhhHHHHHHHHHHhcCCCChh
Q 007818 45 SWNVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLG--------LRFLGYEIFGHVLKLGFDVDMY 115 (588)
Q Consensus 45 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 115 (588)
+....|..+...+++.....+|+.+++ .|+ -|+..+|+.++.+.++.. .+-....+++.|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 344567777888999999999999999 788 899999999999887543 3456788999999999999999
Q ss_pred HHHHHHHHHHh
Q 007818 116 VHNAVIHVFVS 126 (588)
Q Consensus 116 ~~~~l~~~~~~ 126 (588)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.12 Score=48.25 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 428 (588)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..+++++-..+... +-++..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566677788889999998888888888999999999999999877665432 2345788889999999999
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 489 (588)
..+|..+..++.. ..-+..|.++|++.+|.+.--+.. |...+..+..
T Consensus 253 ~~eA~~yI~k~~~-----------~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPKIPD-----------EERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHhCCh-----------HHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHH
Confidence 9998888777321 345677888899988887755543 4444444433
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0035 Score=59.98 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh--CCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC----CCcch
Q 007818 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE--NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE----RNSLT 380 (588)
Q Consensus 307 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 380 (588)
+.+.+...+..++..+....+++.+..++-..... ....-..+..++++.|...|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777666554 2222344455777777777777777777766443 67777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
++.|++.+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666655543
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.00051 Score=47.69 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhC-CHHHHHHHHHHHhccCC
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHG-NVSIGERAAMKLLELDP 512 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 512 (588)
+...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777888888888888888888776 3344 4667777777888888 68899999999888887
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.38 E-value=0.0034 Score=50.40 Aligned_cols=83 Identities=8% Similarity=-0.061 Sum_probs=31.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|++++|..+|+.+..-. +-+...|..|..++-..|++++|+..|...... . +.++..+-.+..++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHHHHHcCCHHH
Confidence 334444444444444433321 112223333333333444444444444444332 1 2223333334444444444444
Q ss_pred HHHHHH
Q 007818 468 AEQLIR 473 (588)
Q Consensus 468 A~~~~~ 473 (588)
|.+-|+
T Consensus 122 A~~aF~ 127 (157)
T PRK15363 122 AIKALK 127 (157)
T ss_pred HHHHHH
Confidence 444443
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.35 E-value=0.0023 Score=61.12 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH
Q 007818 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCV------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184 (588)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 184 (588)
+.+......+++.+....+++.+..++-+... --..+.+++++.|...|..+.++++++.=...|+=||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444445555555555566666665544211 122345678888888888888888888877888888888888
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 007818 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228 (588)
Q Consensus 185 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (588)
.||..+.+.|++..|.++...|...+...+..++..-+..|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777776666666665555555554
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.0065 Score=47.03 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC-ChHHHHHHHHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-KLKHYSCMVDLL 459 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 459 (588)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556677788888899999888888765543 3566677778888888888888888876421100 222333345567
Q ss_pred HhcCChHHHHHHHHh
Q 007818 460 GRSGLLEEAEQLIRS 474 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~ 474 (588)
...|+.++|.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877644
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.066 Score=47.95 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc----HHHHHHHHHccCChhhHHHHHHHHHHhcC
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT----YPLLFKVCASLGLRFLGYEIFGHVLKLGF 110 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 110 (588)
.+...+-.....+...|++++|++.|+.+.. .-|+... .-.+..++.+.++++.|...+++.++..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444444556666788999999999999987 3344322 13455677789999999999999988753
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.28 E-value=0.0034 Score=51.44 Aligned_cols=69 Identities=28% Similarity=0.270 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH-----hcCCccCCc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-----ERGVEKTPG 551 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 551 (588)
....++..+...|++++|...+++++..+|-+...+..++.+|...|+..+|.++|+++. +.|++|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445566677889999999999999999999999999999999999999999999999884 357766553
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.23 E-value=0.0048 Score=55.59 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLA 522 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 522 (588)
.|..-...+.+.|++++|...|+.+. .-|+ ...+.-+...+...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444456678888887777763 2233 23555666677778888888888888887777643 4455557
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 007818 523 NMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.++...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877654
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.23 E-value=0.19 Score=47.36 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=78.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILS 421 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~ 421 (588)
.+|...+..-.+..-++.|..+|.+..+ +++..+++++.-++ .|++.-|..+|+--... -||.. .....+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3455555555555556666666655543 34555666665544 35566666777654443 33333 2334455
Q ss_pred HhccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHHHHHH
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACR 492 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 492 (588)
-+...++-+.|..+|+.... .+..+ ...|..+++.-..-|+...+..+-+++. .-|...+.....+.|.
T Consensus 475 fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 55666777777777775554 22223 4567777777777777777666655553 2244444444444443
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.21 E-value=0.093 Score=49.37 Aligned_cols=183 Identities=17% Similarity=0.096 Sum_probs=104.8
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPER-------NSLTYTAIIGGLAL---HGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
..++-+|....+++...++.+.+... ....-...+-++.+ .|+.++|++++..+....-.+++.++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34445566667777777777766643 11112223334445 678888888888755554567777777766
Q ss_pred HHhcc---------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-hH---HHHHHH---Hh-C----C--C
Q 007818 421 SACCH---------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL-LE---EAEQLI---RS-M----P--M 477 (588)
Q Consensus 421 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~----~--~ 477 (588)
..|-. ....++|+..|.+.-+. .|+...--.++-.+...|. ++ +..++- .. + . .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65532 23467777777766542 3443222222333333342 21 222222 11 1 1 2
Q ss_pred CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
..+...+.+++.++.-.|++++|.+.++++.++.|+. +-..+ .-+=+.+++++.+...+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~-W~l~S----------t~~ni~Li~~~~~~~~~ 360 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA-WELES----------TLENIKLIRHFRKRPEE 360 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc-hhHHH----------HHHHHHHHHHHhcCCCC
Confidence 2466677888899999999999999999999998752 22222 22345566666655443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.18 E-value=0.19 Score=46.46 Aligned_cols=288 Identities=12% Similarity=0.030 Sum_probs=159.0
Q ss_pred hHHHHHHHHHh--CCChHHHHHHHHHHHhcCCCCCCcccHHHHHH--HHHccCChhhHHHHHHHHHHhcCCCChhH--HH
Q 007818 45 SWNVAIRGFLE--TGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK--VCASLGLRFLGYEIFGHVLKLGFDVDMYV--HN 118 (588)
Q Consensus 45 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 118 (588)
.|.+|-.++.. .|+-..|.++-.+..+ -+..|....-.++. +..-.|+.+.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 46666666554 5677778877776653 14555555555553 334678999999999998862 32221 22
Q ss_pred HHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCCcch--HHHHHHHHhc
Q 007818 119 AVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVT--MIGMVSACAQ 192 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--~~~ll~~~~~ 192 (588)
.|.-.--+.|+.+.|...-++. -+.-...+...+...+..|+|+.|+++++.-+... +.++..- -..|+.+-+.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2222234578888777776652 23345678888889999999999999988765542 3344321 1122222111
Q ss_pred ---cCChhHHHHHHHHHHHhCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHH---
Q 007818 193 ---LEDLNLGREIHWYISESGLTLTV-PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA--- 265 (588)
Q Consensus 193 ---~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a--- 265 (588)
..+...|...-.+..+. .|+. ..-..-.+++.+.|+..++-.+++.+=+..+..-...+....+.|+....
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlk 316 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLK 316 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHH
Confidence 12344444444444333 3332 22234456777788888888887777544443333344444455543221
Q ss_pred -HHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-ccCChhHHHHHHHHHHHh
Q 007818 266 -RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS-QLGALDDGIWIHRFIEKE 341 (588)
Q Consensus 266 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 341 (588)
.+-+..|+.++..+...+..+-...|++..|..--+.... ..|....|..+...-. ..|+-.++...+.+..+.
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1234445555555555555555566666555554444443 2455555555554432 335555555555555443
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.0033 Score=57.80 Aligned_cols=129 Identities=11% Similarity=-0.049 Sum_probs=89.2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHh---hhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQM---SSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM-------PMA-ADV 481 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~ 481 (588)
..|..+...|.-.|+++.|+...+.- .+.+|-... ...+..+..++.-.|+++.|.+.|+.. ..+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666777777788999888765542 222232222 355677888888889999998888754 111 234
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELD------PQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.+.-++..+|.-..++++|+.+..+=+.+. -....++.+|+.++...|..++|+.+.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456677778878888888988877654322 2245678889999999999999988877664
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.00077 Score=48.17 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhcc----CCC---CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLEL----DPQ---DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.++..+...+...|++++|+..+++++++ .++ -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666677777777777777777643 222 245688899999999999999999998754
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.029 Score=50.08 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHhHH
Q 007818 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG---LLEEAEQLIRSM-PMAA-DVVVW 484 (588)
Q Consensus 410 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~ 484 (588)
+-|...|..|..+|...|+.+.|...|.+..+. .++++..+..+..++..+. ...++.++|+++ ..+| +..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 556778999999999999999999999998873 3456667777777655433 467788888887 3455 55566
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.-+...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677778899999999999999999888654
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.027 Score=48.85 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH-----HHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK-----HYSCM 455 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l 455 (588)
-+.++..+.-.|.+.-.+..+.+.++...+.++.....+.+.-.+.||.+.|...|++..+. .-..+.. .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 34455555556666666677777766554445556666666666777777777777766543 2222222 22222
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...|.-+.++.+|...+.++... | ++...+.-.-...-.|+...|++.++.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23344455566666666555321 2 3333333333334456666666666666666664
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.2 Score=46.78 Aligned_cols=85 Identities=11% Similarity=0.000 Sum_probs=41.3
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcC
Q 007818 388 LALHGKALDAISYFSEMIGV---GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSG 463 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 463 (588)
..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+...+ +.+. ...+..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655542 2233334455555555556666666655555543 1121 222223333444555
Q ss_pred ChHHHHHHHHhC
Q 007818 464 LLEEAEQLIRSM 475 (588)
Q Consensus 464 ~~~~A~~~~~~~ 475 (588)
+|++|.+-++..
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 556665555543
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0023 Score=44.93 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 456 VDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
...|.+.+++++|.++++++. ..| +...|......+...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888773 445 55667777778888999999999999999999977655443
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.01 E-value=0.02 Score=45.18 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC----CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHH
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSMPM----AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI---YVLLANMY 525 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~ 525 (588)
.-.....+.|++++|.+.|+.+.. .| ....-..++.++.+.++++.|...+++.+++.|.++.+ +...+-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344455678888888888888742 22 34466677888899999999999999999999987654 44445555
Q ss_pred HccCC---------------hHHHHHHHHHHHhc
Q 007818 526 RDSNM---------------WEEAGKVRKMMEER 544 (588)
Q Consensus 526 ~~~g~---------------~~~A~~~~~~~~~~ 544 (588)
.++.. ..+|...|+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 55554 67777778777654
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.042 Score=47.70 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHH-----HHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT-----ALV 354 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~ 354 (588)
.+.++.++...|.+.-....+++.++...+.+......+.+.-.+.|+.+.|...|+...+..-..+....+ ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 455666666777777788888888887655667777778888888888888888888776654333333333 333
Q ss_pred HHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 355 DMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
..|.-.+++..|...+.++... ++...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677788888888777643 3344444444444467788888888888775
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0063 Score=51.40 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=69.6
Q ss_pred CCcccHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHccc----------------CChhHHHH
Q 007818 275 KYVVPWNAIIGGYVQ-----AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL----------------GALDDGIW 333 (588)
Q Consensus 275 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 333 (588)
.+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|+..+-+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444455555655553 477888888899999999999999999999987542 23456889
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHhHhcCC
Q 007818 334 IHRFIEKENFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (588)
++++|...|+-||..++..+++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999876654
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.95 E-value=0.018 Score=50.18 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=38.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHccCChHHHHH
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSG---IYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 536 (588)
+..-|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 445578999999999999999999998544 46778889999999885543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.065 Score=46.66 Aligned_cols=141 Identities=14% Similarity=0.088 Sum_probs=72.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh-HHHHHHHHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLM-P-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL-KHYSCMVDLL 459 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 459 (588)
.....+...|++.+|...|+.+...... | -......++.++.+.|+++.|...++...+.+.-.|.. ..+-.++.++
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3444555666677777777666654211 0 11244455566666666666666666666643222221 1111111111
Q ss_pred HhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch-----------------HHHHH
Q 007818 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-----------------YVLLA 522 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~ 522 (588)
... ... .+ ......+...+|...++.+++..|+++.+ -..++
T Consensus 90 ~~~--~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 90 YKQ--IPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHH--HHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--Ccc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 000 00 00112234456777777777777776544 23478
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 007818 523 NMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..|.+.|.+..|..-++.+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8999999999999999999865
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0066 Score=56.20 Aligned_cols=127 Identities=15% Similarity=0.100 Sum_probs=96.3
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcC----CCC---------ChHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHh
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFR----LSP---------KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PM-AADVV 482 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~ 482 (588)
.-...+.+.|++..|..-|+++..... .++ -..++..+..+|.+.+++.+|++..+.. .. +++..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 346678899999999999988655322 111 1345667788888999999998888776 33 35677
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH-HHHHHHHHhc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA-GKVRKMMEER 544 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 544 (588)
.+-.-..++...|+++.|+..|++++++.|.|..+-..|+.+-.+...+++. .++|..|...
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777788888999999999999999999999988888888877776655544 7788888654
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.59 E-value=0.05 Score=51.98 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhcc---------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 394 ALDAISYFSEMIG-VGLMPDE-ITFLGILSACCH---------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 394 ~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.+.|+.+|.+... ..+.|+- ..|..+..++.. ..+..+|.++-++..+ --+.|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 3455666666551 1133432 344444444321 1122334444444443 2233344444444444555
Q ss_pred CChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 463 GLLEEAEQLIRSMP-MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 463 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
|+++.|..+|++.. ..|+ ...|......+.-.|+.++|.+.++++++++|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 55555555555542 3343 333433444444555555555555555555554
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.16 Score=50.52 Aligned_cols=160 Identities=12% Similarity=0.072 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHhcc----CCchHHHHHHHHHhhhhcCCCCChH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI------TFLGILSACCH----GGLVDEGRKYFAQMSSIFRLSPKLK 450 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 450 (588)
+..+++...-.|+-+.+++.+.+..+.+---.+. .|..++..++. ..+.+.|.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555666666666666654432111111 23333433332 44678899999999874 35555
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHhCCC-C-----CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH-H
Q 007818 451 HYS-CMVDLLGRSGLLEEAEQLIRSMPM-A-----ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL-A 522 (588)
Q Consensus 451 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-~ 522 (588)
.|. .-.+.+...|+.++|.+.|++... + .....+..+...+....++++|...+.++.+.+.-+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 444 345567788999999999997531 1 1344556677778889999999999999998776555555544 5
Q ss_pred HHHHccCCh-------HHHHHHHHHHHh
Q 007818 523 NMYRDSNMW-------EEAGKVRKMMEE 543 (588)
Q Consensus 523 ~~~~~~g~~-------~~A~~~~~~~~~ 543 (588)
-++...|+. ++|.+++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 555678888 888888888754
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.11 Score=46.27 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=81.1
Q ss_pred HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHH---HHHHHHhhCCHH
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA---LFFACRLHGNVS 498 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 498 (588)
.....|++.+|..+|...... .+-+...-..++.+|...|+.+.|..++..++.+-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888888763 233456666788888888888888888888875433332222 222233333322
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+. ..++.-+..+|+|...-..++..+...|+.++|.+.+=.+.+++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 23344556788888888889999999999999988877776553
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.0048 Score=43.99 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-----MA---AD-VVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
.+++.+...|...|++++|++.+++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666665441 11 22 345566666677777777777777776643
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.52 E-value=0.78 Score=43.62 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHH----HHHHHHH--HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEI----TFLGILS--ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~----~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
...-+.+-+-..+.|++|-.. .-+.+.+ .+...|++.++.-.-..+. .+.|++.+|..++-++....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 444455555566678777544 3333433 3456899998887766665 567999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhHHH
Q 007818 468 AEQLIRSMPMAADVVVWG 485 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~ 485 (588)
|.+++..++ |+...+.
T Consensus 514 A~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHhCC--CchhhHH
Confidence 999999986 4444443
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.032 Score=51.89 Aligned_cols=128 Identities=9% Similarity=-0.063 Sum_probs=93.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh
Q 007818 384 IIGGLALHGKALDAISYFSEMIGV-----GLMPD---------EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 449 (588)
-...|.+.|++..|...|++.... +..+. ..++..+..++.+.+++..|++..++... --+++.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCch
Confidence 456788999999999999986652 22221 12566778888899999999999999987 446778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHh-h-CCHHHHHHHHHHHhccCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRL-H-GNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~-~-~~~~~A~~~~~~~~~~~p~ 513 (588)
.....-..++...|+++.|+..|+++ ...|+......-+..|.+ . ...+...++|..|+...+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888889999999999999999987 466766655555555433 2 2344557778887765553
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.51 E-value=0.14 Score=39.43 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=83.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|..++..++..+.... .+..-++.++--...+-+=+-..+.++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 44567777778877777663 344555655555544445555555555554422211 2333333
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
....+-.+. .+.......+.....+|.-++-.+++..+.+.+..+|..+.-++.+|.+.|+..++.+++.++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333333321 233445556677788999999999999998766668999999999999999999999999999999875
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.26 Score=44.02 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=113.8
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC
Q 007818 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
...++++....+....-..-.......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33444444443322222223344567889999999999888763 334566777888999999999999999887653 1
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC--CCCchHHHH
Q 007818 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDP--QDSGIYVLL 521 (588)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l 521 (588)
-.........-+..+.+.....+..++-++....| |...-..+...+...|+.+.|...+-.+++.+- .|...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11112222334556666666666666666666566 666777788888889999999988888877653 467777888
Q ss_pred HHHHHccCChHHHHHHH
Q 007818 522 ANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 522 ~~~~~~~g~~~~A~~~~ 538 (588)
+..+.-.|.-+.+...+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88887777554444333
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.036 Score=48.84 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHhHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSM----PMAA-DVVVWGA 486 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~ 486 (588)
.|+..+. +.+.|++..|...|....+. ++-+ +..+..|...+...|++++|..+|..+ +..| -+..+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3444443 33556688888888877773 3222 345556777777777777777777665 2223 2355666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
+.......|+.++|...++++.+..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666667777777777777777777765443
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.032 Score=49.14 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-------MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVL 520 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 520 (588)
.|+.-++ +.+.|++.+|...|.... ..|+...| |..++...|+++.|...|..+.+-.|++ |..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5665444 457888999999998762 22455555 6778899999999999999999988775 456888
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|+.+..+.|+.++|..+|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.069 Score=40.89 Aligned_cols=90 Identities=21% Similarity=0.153 Sum_probs=65.4
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHccCC
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS----GIYVLLANMYRDSNM 530 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 530 (588)
-++...|+.+.|++.|.+. ..-| .+..|+.-..++.-+|+.++|..-+.+++++.-+.. .+|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456778888888887765 2223 566777777788888888888888888887764322 246667778888888
Q ss_pred hHHHHHHHHHHHhcCC
Q 007818 531 WEEAGKVRKMMEERGV 546 (588)
Q Consensus 531 ~~~A~~~~~~~~~~~~ 546 (588)
-+.|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888887774
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=96.12 E-value=0.095 Score=42.56 Aligned_cols=84 Identities=10% Similarity=0.026 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 468 (588)
...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|...... . ..|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34444555555444444332 222333333444444444555555544444332 1 12222233344444455555555
Q ss_pred HHHHHhC
Q 007818 469 EQLIRSM 475 (588)
Q Consensus 469 ~~~~~~~ 475 (588)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544444
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=0.5 Score=44.62 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=107.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhcc---CCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVG---LMPDEITFLGILSACCH---GGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
.+...++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|.+++..+... ...+++.++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 344456667899999999999999998741 11122233334455666 89999999999996555 667888888
Q ss_pred HHHHHHHH----h-----cCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHhhCC-HH---HHHHHH---HHHh-cc---C
Q 007818 453 SCMVDLLG----R-----SGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGN-VS---IGERAA---MKLL-EL---D 511 (588)
Q Consensus 453 ~~l~~~~~----~-----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~~~-~~---~ 511 (588)
..+++.|- . ....++|.+.|.+. ..+|+..+-..++..+...|. ++ +..++. ..++ +. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88887763 2 22467888888876 455665444333333333332 22 222222 1111 11 1
Q ss_pred C-CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 512 P-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 512 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+ .+=+.+..++.+..-.|++++|.+..+++.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 244456678899999999999999999998763
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.10 E-value=1.8 Score=43.55 Aligned_cols=156 Identities=9% Similarity=0.029 Sum_probs=69.6
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCC-----cchHHHHHHHHHhcCCHHHHHH
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT-----VVSCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~ 267 (588)
-|++++|+++|-++-.. ...+..+.+.|+|-...++++.--..+ ...|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666554443 223455556666665555555432211 1245555555555555555555
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
.+..-.. -...+.++.+...+++-..+... ++.|....-.+...+...|.-++|.+.+-+ .+.+
T Consensus 818 yY~~~~~-----~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p--- 881 (1189)
T KOG2041|consen 818 YYSYCGD-----TENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP--- 881 (1189)
T ss_pred HHHhccc-----hHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc---
Confidence 5443221 11223333333333333222222 222333344444555555555555443311 1111
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPER 376 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (588)
.+.+..|...+++.+|.++-+...-|
T Consensus 882 ---kaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 882 ---KAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 23344455555566666555554433
No 236
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.024 Score=46.91 Aligned_cols=60 Identities=20% Similarity=0.068 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..-..+..+.+..+.|+.-..++++++|....++..-+.+|.+..++++|++-|+.+.+.
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 333344455555556666666666666655555555555666666666666666555543
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.097 Score=47.24 Aligned_cols=160 Identities=16% Similarity=0.069 Sum_probs=117.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH----HHHHHHHhcCC
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS----CMVDLLGRSGL 464 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 464 (588)
.-.|+..+|...++++.+. .+.|...+...-.+|.-.|+.+.-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888899998886 466777888888889999999999999999887 4455654443 33445678999
Q ss_pred hHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHccCChHHHHHHH
Q 007818 465 LEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ----DSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 465 ~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
+++|++.-++.- +. .|..............|++.++.+...+--..-.. -...|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998873 33 46666666666677888999999888776543322 1223556677778889999999999
Q ss_pred HHHHhcCCccCCc
Q 007818 539 KMMEERGVEKTPG 551 (588)
Q Consensus 539 ~~~~~~~~~~~~~ 551 (588)
++-.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9876655555554
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.94 E-value=0.33 Score=47.58 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=97.3
Q ss_pred HHHHhCCChhHHHHHHH--HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 007818 153 NGFVRSGFPREAIRLFR--DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 153 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 230 (588)
....-.++++++.++.+ ++.. .++ ......+++.+-+.|-.+.|+++.. |+ ..-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCC
Confidence 34455778888777665 2221 122 3446777778888888888887643 33 234556678899
Q ss_pred hhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310 (588)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 310 (588)
++.|.++.+... ++..|..|.....+.|+++-|++.|....+ |..|+-.|...|+.+...++.+.....|-
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 998888877665 556888888888888888888888888765 77777888888888887777777776651
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIH 335 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~ 335 (588)
++....++...|+.++..+++
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444556666655554
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.88 E-value=0.024 Score=32.34 Aligned_cols=32 Identities=34% Similarity=0.295 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34445555666666666666666666666643
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.078 Score=43.34 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh----hcCCCCChHH
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS----IFRLSPKLKH 451 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 451 (588)
..++..+...|++++|..+++.+.... +-+...+..++.++...|+...|.++|+.+.+ ..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345555666777777777777776653 44556777777777777777777777666532 2466666554
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.13 Score=40.34 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=62.2
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
..++..++.++++.|+.+....+++..=..+... -...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666666777777666666665432211100 000000 011233578888888888888888
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
|++..|.++.+...+.++++.+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888888888777888887776443
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=95.85 E-value=0.57 Score=45.07 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
.+|.++.+...+.+ +-|+.....+..+....++++.|...|++.... .|+ ...|........-.|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444555555543 344445555555445555566666666655532 333 3344444444455566666666655
Q ss_pred h-CCCCC
Q 007818 474 S-MPMAA 479 (588)
Q Consensus 474 ~-~~~~~ 479 (588)
+ +..+|
T Consensus 397 ~alrLsP 403 (458)
T PRK11906 397 KSLQLEP 403 (458)
T ss_pred HHhccCc
Confidence 5 34444
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.80 E-value=0.029 Score=42.82 Aligned_cols=55 Identities=22% Similarity=0.020 Sum_probs=52.0
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+....|+.+.|++.|.+++.+-|.++++|++-+.++.-+|+.++|++-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999775
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.75 E-value=0.021 Score=32.65 Aligned_cols=31 Identities=26% Similarity=0.163 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
.|..++..+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666777777777777666664
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.68 E-value=1.4 Score=38.87 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHccCChHHHHHHHHHHHhcCCccCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGI---YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 550 (588)
+..-|.+.|.+..|..-++++++.-|+.+.+ +..+..+|.+.|..++|.+.-+-+. .+.+.++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCCCc
Confidence 4456789999999999999999988775554 5566778999999999988766554 4444443
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.61 E-value=2.3 Score=40.91 Aligned_cols=150 Identities=13% Similarity=-0.032 Sum_probs=81.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hH
Q 007818 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP---DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LK 450 (588)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 450 (588)
....+|..++..+.+.|+++.|...+..+...+..+ .+.....-+......|+..+|...++..... ..... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777888888888888888888877643221 3344444556666778888888888777762 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHhHHHHHHHHHHhh------CCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQL-IRSMPMAADVVVWGALFFACRLH------GNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
....+...+.. ..+..... ......+.-...+..+...+... +..+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112233333333333 78889999999999999988888888888
Q ss_pred HHHcc
Q 007818 524 MYRDS 528 (588)
Q Consensus 524 ~~~~~ 528 (588)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77654
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.61 E-value=0.45 Score=37.76 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=57.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGL--MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++.+--.|+. .|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344556666666666666655411 1112344555666666666666666666666542222221 233333333222
Q ss_pred CChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
...... +..+. ..-...+....|...|+++++..|+++.+
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 111111 11110 00011223567888899999999987543
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=3.1 Score=42.41 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHH
Q 007818 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490 (588)
Q Consensus 411 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 490 (588)
-...+.+--+.-+...|+..+|.++-.+.+- ||...|..-+.+++..+++++-+++-++.+ .+..|.-+..+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 3344556666667778888888887766643 788888888889999999988888777664 25567777888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
|.++|+.++|..++-+.-.+ .-...+|.+.|++.+|.+.-
T Consensus 754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 99999999998887655222 15678888888888887653
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.44 Score=43.24 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=107.4
Q ss_pred HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHhccCCchH
Q 007818 358 AKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI----LSACCHGGLVD 430 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~~~~ 430 (588)
-..|++.+|...++++.+ .|..+++-.-.+|.-.|+.+.-...+++.... ..|+...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777764 36677777888999999999999999888765 34555444333 33455789999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-------HhHHHHHHHHHHhhCCHHHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD-------VVVWGALFFACRLHGNVSIGERA 503 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~ 503 (588)
+|++.-++..+- -+.|.-.-.++...+...|++.++.+++.+-...-+ ...|. ..-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhHHHHH
Confidence 999998888763 234455556778888899999999999887642211 11222 22234456899999999
Q ss_pred HHHHh--ccCCCCCchH
Q 007818 504 AMKLL--ELDPQDSGIY 518 (588)
Q Consensus 504 ~~~~~--~~~p~~~~~~ 518 (588)
|.+-+ +++.+|..+.
T Consensus 270 yD~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHHhhccchhhh
Confidence 97654 4556565443
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.54 E-value=1.6 Score=38.75 Aligned_cols=196 Identities=19% Similarity=0.122 Sum_probs=110.8
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS- 421 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~- 421 (588)
.........+...+++..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444455555556666665555554431 233344455555556666666776666666543222 111222222
Q ss_pred HhccCCchHHHHHHHHHhhhhcCC--CCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--HhHHHHHHHHHHhhCC
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRL--SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD--VVVWGALFFACRLHGN 496 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~ 496 (588)
.+...|+++.|...+.+.... .. ......+......+...++.+++...+.+.. ..++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 566677777777777776431 11 1123333333444556677777777776652 2222 4556666666667777
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.|...+.++....|.....+..++..+...|.++++...+++.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777655556666666666666777777777765543
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.44 E-value=0.51 Score=46.32 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=107.2
Q ss_pred HHHHHhCCChHHHHHHHH--HHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 007818 50 IRGFLETGKMREAVDLYK--QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (588)
.+...-.++++++.+..+ ++.. .++ ....+.++..+.+.|..+.|.++...-. .-.....+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHC
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhc
Confidence 455566788999877765 2222 122 3447778888889999998887754332 235566789
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 007818 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207 (588)
Q Consensus 128 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 207 (588)
|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+...++.+...
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998876 666999999999999999999999988653 5667777888888888888877777
Q ss_pred HhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
..|- ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6643 355566666678887777776554
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=3.9 Score=42.32 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 51 RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
.-+.+.|++++|...|-+-.. . +.| ..++.-+.....+..-..+++.+.+.|+ .+...-..|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~-~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG-F-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc-c-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 344556666666666655433 1 222 2244445555555556666666666665 3444455666777777776
Q ss_pred hHHHHHhccCCCCCc-ccHHHHHHHHHhCCChhHHHHH
Q 007818 131 GLACNVFDESCVRNL-VSWNSLINGFVRSGFPREAIRL 167 (588)
Q Consensus 131 ~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 167 (588)
++-.+..+....... .-....+..+.+.+-.+.|.-+
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 666666655442111 1233444444444444444444
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.40 E-value=0.15 Score=46.62 Aligned_cols=129 Identities=11% Similarity=-0.005 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHhccCCchHHHHHHHHHhhhh---cCCCCChHHHH
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGL---MP--DEITFLGILSACCHGGLVDEGRKYFAQMSSI---FRLSPKLKHYS 453 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 453 (588)
.++..++...+.++++++.|+...+--- .| ....+..+...|.+..|+++|.-+..++.+. +++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3344555555566666666665443110 11 1124555555666666666666555444321 12222112222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 454 -----CMVDLLGRSGLLEEAEQLIRSM-------PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 454 -----~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
.+.-+|...|....|.+.-++. ..+| .......+...|...|+.+.|..-|+.+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2333445555555555555443 1111 2334445555566666666666666555544
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.39 E-value=1.1 Score=38.12 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.+||-+.--+...|+++.|.+.|+...+....- ..+...-.-++.-.|++.-|.+=+...-+...-.|-...|.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 3456666666667777777777777766643111 11221112233345666666655544443211112122222221
Q ss_pred HHHhcCChHHHHHHH-HhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHccC
Q 007818 458 LLGRSGLLEEAEQLI-RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-------SGIYVLLANMYRDSN 529 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 529 (588)
.+.-++.+|..-+ ++.. ..|...|...+-.+.- |... .+..++++..-..++ ..+|..|+.-+...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233555555433 3332 2233333332222211 1110 111222222211111 346788888888899
Q ss_pred ChHHHHHHHHHHHhcCC
Q 007818 530 MWEEAGKVRKMMEERGV 546 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~~ 546 (588)
+.++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999988888776543
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=4.1 Score=42.22 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
.+.+.|++++|..-|-+-+.. +.|+ .++.-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344556666666555444321 1221 2344444444444555555555555555 33334556666666666666
Q ss_pred HHHHHHhcCCCCcc--hHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 234 AEEIFDSMVNKTVV--SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303 (588)
Q Consensus 234 A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 303 (588)
-.++.+... .+.. -....+..+.+.+-.++|.-+-..... +. ..+--.+-..+++++|++.+..+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 655555544 2111 123334444444444444444333222 11 11112233445566666665543
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.35 E-value=2.3 Score=39.23 Aligned_cols=99 Identities=9% Similarity=0.031 Sum_probs=49.3
Q ss_pred HHHHHHHHHcccCChhH---HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDD---GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGG 387 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~ 387 (588)
++..++.++...+..+. |..+++.+.... .-.+.++..-+..+.+.++.+++.+++.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666655443 444444553332 223444444555666667777777777776632 22344444443
Q ss_pred HH--hcCChHHHHHHHHHHHHCCCCCCH
Q 007818 388 LA--LHGKALDAISYFSEMIGVGLMPDE 413 (588)
Q Consensus 388 ~~--~~~~~~~a~~~~~~~~~~~~~p~~ 413 (588)
+. .......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 31 122334555555555444344443
No 257
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.35 E-value=0.21 Score=47.84 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc----cHHHHHHHHHccCChhhHHHHHHHHHHh
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF----TYPLLFKVCASLGLRFLGYEIFGHVLKL 108 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (588)
+.+...|+.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|...++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999999999988 667754 4888999999999999999999999985
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.31 E-value=0.64 Score=40.88 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=80.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
.=+..-.+.|++++|.+.|+.+.......|= ..+.-.++.++-+.++.+.|...+++.++.-+.....-|...|.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 3344456677778888777777664332222 223444455566777777777777777776433222334444444432
Q ss_pred C-------CChhHHHHHhcc---CCC--CCc------c----------cH--HHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 007818 127 C-------GDLGLACNVFDE---SCV--RNL------V----------SW--NSLINGFVRSGFPREAIRLFRDMQLERV 176 (588)
Q Consensus 127 ~-------~~~~~A~~~~~~---~~~--~~~------~----------~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 176 (588)
- .|...+...+.. ... ||. . +. -.+.+.|.+.|.+..|..-+++|.+. .
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y 197 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-Y 197 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-c
Confidence 1 223333333322 111 111 1 00 12344566777777777777777665 2
Q ss_pred CCCcc---hHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 177 EPDEV---TMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 177 ~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
+-+.. .+-.+..+|...|-.++|...-.-+..
T Consensus 198 ~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 198 PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 22222 233444556666666666555444433
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.17 E-value=0.042 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999965
No 260
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.15 E-value=0.25 Score=38.70 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHH
Q 007818 43 SFSWNVAIRGFLETGKMREAVDLYKQ 68 (588)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 68 (588)
..++..++-++++.|+.+....+.+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 34555666666666666666555544
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.14 E-value=0.18 Score=44.49 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=78.3
Q ss_pred hHHhhcccCC--CCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccC---------
Q 007818 30 YCTKILFNVQ--NPNSFSWNVAIRGFLET-----GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG--------- 93 (588)
Q Consensus 30 ~a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 93 (588)
..+..|...+ ..|-.+|-+.+..+... +..+-....++.|.+ .|+.-|..+|+.|+..+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3445566666 66788888888877654 566777788889988 999999999999998764432
Q ss_pred -------ChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 007818 94 -------LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129 (588)
Q Consensus 94 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (588)
+-+-+..++++|...|+-||..+-..|++++.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 335688999999999999999999999999988765
No 262
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.13 E-value=4.9 Score=41.89 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=11.1
Q ss_pred HHhCCChhHHHHHHHHhH
Q 007818 155 FVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~ 172 (588)
..+.|++..+.++...+.
T Consensus 43 a~~~g~~~~~~~~~~~l~ 60 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLK 60 (644)
T ss_pred HHHCCCHHHHHHHHHhcc
Confidence 455667777666666553
No 263
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.98 E-value=0.53 Score=44.01 Aligned_cols=154 Identities=10% Similarity=-0.046 Sum_probs=99.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhh----cCCCCCh
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEM----IGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSI----FRLSPKL 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 449 (588)
..|..|...|.-.|+++.|+..-+.- .+-|-+. ....+..+..+++-.|+++.|.+.|+..... ..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666667777788999988765432 2223221 2346778888999999999999988875432 1112234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC--CCCC----
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD--PQDS---- 515 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~---- 515 (588)
.+-.+|...|.-..++++|+.++.+-- ..-....+.++..++...|..++|+...++.++.. .+|+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 455678888888888999999887641 11345677888888888899999988887776532 2222
Q ss_pred chHHHHHHHHHccCChH
Q 007818 516 GIYVLLANMYRDSNMWE 532 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~ 532 (588)
....+|.+.-...|.-+
T Consensus 356 Tar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 356 TARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhhHHHHHHhCCCc
Confidence 23344555444455433
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.95 E-value=6.8 Score=42.48 Aligned_cols=118 Identities=17% Similarity=0.057 Sum_probs=68.5
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 429 (588)
+.-.++.-.+.|-+.+|+.++..-.+.-...|.+-..-+...+.+++|.-.|+..-+ ....+.+|..+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 344444455566667776666544433344455555555566677777666654322 12245667777888
Q ss_pred HHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007818 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (588)
.+|..+..++.. +-..-..+-..|+.-+...+++-+|-++..+...+
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 888777776643 11111222356677777788888888777766443
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=2.3 Score=36.98 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-hHHHHHHHHHHhhCCHHHHHHHHHHHhc----cCCCCCch
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-------MAADV-VVWGALFFACRLHGNVSIGERAAMKLLE----LDPQDSGI 517 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~ 517 (588)
..+....+.|++...+.+|-..+.+-. .-|+. ..+...+-.+.-..|+..|+..++.--+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 344555566667777777666555432 11221 2334444445566678888888777544 33556667
Q ss_pred HHHHHHHHHccCChHHHHHHHH
Q 007818 518 YVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
...|+.+| ..|+.+++..+..
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 77777655 4567776666543
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.91 E-value=1.3 Score=42.86 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=87.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
.-+..++..-+++-++..+ +.|+-.+--.+ -+-.......++++++++..+. + ...+..- ......|.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~--- 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH--- 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---
Confidence 3445556666666666665 35554332222 1223345578888888887764 1 1111000 00001111
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
..+.+.+-..+|-...-..+...+.+.|+.++|++.++++++..|. +-.+...|+.++...+.+.++..++.+--+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111112233334445666677889999999999999987775 45678889999999999999999998875544
Q ss_pred CccCC
Q 007818 546 VEKTP 550 (588)
Q Consensus 546 ~~~~~ 550 (588)
.+++.
T Consensus 326 lpkSA 330 (539)
T PF04184_consen 326 LPKSA 330 (539)
T ss_pred CCchH
Confidence 44443
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.82 E-value=2.7 Score=37.29 Aligned_cols=218 Identities=17% Similarity=0.079 Sum_probs=139.9
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHcccCChhHHHHHHHHHHHh-CCCCcchHHHHHHHHhHhcCChhHHHHH
Q 007818 292 RSKEALALFHEMQATGIK-PDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQV 369 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 369 (588)
....+...+......... .....+......+...+....+...+...... ........+......+...+++..+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443211 12345555555566666666666666555442 2233344455556666666777777777
Q ss_pred hccCCC--CCc-chHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 370 FHEMPE--RNS-LTYTAIIG-GLALHGKALDAISYFSEMIGVGLMP----DEITFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 370 ~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
+..... ++. ........ .+...|+++.|...+.+.... .| ....+......+...++.+.+...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 776654 221 22333333 678889999999999988652 33 233444444446678899999999999987
Q ss_pred hcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 442 IFRLSP-KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 442 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
. .+. ....+..+...+...++++.|...+.... ..|+ ...+......+...+..+.+...+.+..+..|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3 333 46778888888999999999999988773 3344 445555555555777899999999999999986
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.81 E-value=3.3 Score=40.30 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCCC
Q 007818 499 IGERAAMKLLELDPQD 514 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~ 514 (588)
.|.+.+.++++.+|.-
T Consensus 364 ~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 4667888888877754
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.77 E-value=0.063 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
|.++..++.+|.+.|++++|.++++++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999988653
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.69 E-value=0.8 Score=45.70 Aligned_cols=157 Identities=13% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCc-----ccHHHHHHHHHc----cCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDN-----FTYPLLFKVCAS----LGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
.++....-.||-+.+++.+....+..++.... ..|+.++..++- ..+.+.|.++++.+.++- |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 44555566677777777777765533333221 123333333332 346677777777777643 5554444
Q ss_pred HHH-HHHHhCCChhHHHHHhccCCC-------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 119 AVI-HVFVSCGDLGLACNVFDESCV-------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 119 ~l~-~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
..- +.+...|++++|++.|++... -....+-.+...+.-.++|++|.+.|..+.+.+ ..+..+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 333 445557778888877775321 122334445556666777777777777776643 33444454444333
Q ss_pred -hccCCh-------hHHHHHHHHHH
Q 007818 191 -AQLEDL-------NLGREIHWYIS 207 (588)
Q Consensus 191 -~~~~~~-------~~a~~~~~~~~ 207 (588)
...++. ++|.+++.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 344555 55555555443
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.66 E-value=1.6 Score=33.90 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
...-+..+..+|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445666777788888888888777643 777777788888888888888888888887775 54
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.63 E-value=1.9 Score=34.74 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
.++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555555443 2344455555555544
No 273
>PRK09687 putative lyase; Provisional
Probab=94.40 E-value=4.1 Score=37.48 Aligned_cols=25 Identities=16% Similarity=-0.137 Sum_probs=11.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+.++...|+- +|...+.++.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444442 45555555555444
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.36 E-value=6.1 Score=39.37 Aligned_cols=415 Identities=11% Similarity=0.084 Sum_probs=213.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc-cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (588)
+-..|..+|.---.....+.+..++..++. -.|-.. .|......=.+.|..+.+.++|++-++ |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~---kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS---KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 344566666655555555667777777765 234433 233333333477888999999999887 677777777777
Q ss_pred HHHHHh-CCChhHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh--
Q 007818 121 IHVFVS-CGDLGLACNVFDESCV------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA-- 191 (588)
Q Consensus 121 ~~~~~~-~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-- 191 (588)
+..+.. .|+.+.....|+.... .+...|...|.--..++++.....++++..+. |. ..|+.....|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHH
Confidence 765544 5677777777766321 24556777777777788888888888888752 22 12222221111
Q ss_pred -ccC------ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHH
Q 007818 192 -QLE------DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK-LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263 (588)
Q Consensus 192 -~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 263 (588)
... ..+++.++-...... ......+. .+.-....+..-.+.. ..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~--------------~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSK--------------SLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccc--------------hhh
Confidence 111 111111111000000 00000000 0000000111100000 000
Q ss_pred HHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
++...+.+. ...--..+............++.-... |- ....- -.
T Consensus 249 ~~~~~l~~~-------~~~~~~~~~~s~~~~~kr~~fE~~Ikr---pY-----------fhvkp--------------l~ 293 (577)
T KOG1258|consen 249 EEKTILKRI-------VSIHEKVYQKSEEEEEKRWGFEEGIKR---PY-----------FHVKP--------------LD 293 (577)
T ss_pred HHHHHHHHH-------HHHHHHHHHhhHhHHHHHHhhhhhccc---cc-----------cccCc--------------cc
Confidence 000000000 000000111111111111122221111 00 00000 01
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
.++...|...+..-...|+.+.+.-.|+...-|. ...|-..+.-....|+.+-|..++....+-.++-.+.+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 1234456666666677788888887777766542 2345555555555588888887777665543332322222222
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCC----HhHHHHHHHH-
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAE---QLIRSMP-MAAD----VVVWGALFFA- 490 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~----~~~~~~l~~~- 490 (588)
.-+-..|+++.|..+++.+... . |+ ...-..-+....+.|+.+.+. +++.... .+-+ ...+....+-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 2344578999999999999885 3 55 333333455667888888887 5554432 1212 1122222222
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+...++.+.|..++.++.+..|++...|..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 456789999999999999999999999998888877665
No 275
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.30 E-value=0.39 Score=42.42 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=71.3
Q ss_pred CcccHHHHHHHHH-----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC----------------ChhHHHHH
Q 007818 276 YVVPWNAIIGGYV-----QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG----------------ALDDGIWI 334 (588)
Q Consensus 276 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~~~ 334 (588)
+..+|.+.+..|. +.+.++-....++.|.+.|+.-|..+|..|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 3344444444443 23566777777888999999999999999998875432 33457899
Q ss_pred HHHHHHhCCCCcchHHHHHHHHhHhcCChh-HHHHHhccCC
Q 007818 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIA-KALQVFHEMP 374 (588)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~ 374 (588)
+++|...|+-||..+-..|++++.+.+-.- +..++.--|+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999998877543 3344433333
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=3.6 Score=35.90 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
|.....+|...+++++|...+.+..+. ...+...| ...+.++.|..+.+++.+.. --...++--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 333444555566666666555554421 11111111 11223344444444444331 123345556667777
Q ss_pred cCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHhccCCchHHHHH
Q 007818 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL--MPDE---ITFLGILSACCHGGLVDEGRK 434 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~a~~ 434 (588)
+|.++-|-..+++.-+ .....++++|+++|++...--. ..+. ..+..+...+.+...+++|-.
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7777766655554321 2334567777777776543200 1111 234555566667777777665
Q ss_pred HHHHhhhh---cCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC---C--CC-CCHhHHHHHHHHHHhhCCHHHHHHHH
Q 007818 435 YFAQMSSI---FRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM---P--MA-ADVVVWGALFFACRLHGNVSIGERAA 504 (588)
Q Consensus 435 ~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (588)
.+.+-... ..--++ -..|-..|-.|.-..++..|...++.- + .. .+..+...|+.+| ..||.+++..++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 55443211 011122 234555566666677888899888873 2 12 3567788888777 567777766654
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.01 E-value=0.089 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=26.0
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999998754
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.94 E-value=1.4 Score=40.63 Aligned_cols=218 Identities=12% Similarity=0.057 Sum_probs=113.5
Q ss_pred hcCCHHHHHHHhhhCCCC------CcccHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHcccC
Q 007818 258 KFGFLDIARKIFDDLPEK------YVVPWNAIIGGYVQAKRSKEALALFHEMQAT--GIKPDA---VTTVHCLSACSQLG 326 (588)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~~ 326 (588)
...+.++++..+...... ...++..+..+.+..|.+++++..--.-+.. ...-.. ..|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554433221 1223555666666677666655432211110 011111 12333333333333
Q ss_pred ChhHHHHHHHHHHHh-CCCC---cchHHHHHHHHhHhcCChhHHHHHhccCCC-------C--CcchHHHHHHHHHhcCC
Q 007818 327 ALDDGIWIHRFIEKE-NFNL---NVVLGTALVDMYAKCGNIAKALQVFHEMPE-------R--NSLTYTAIIGGLALHGK 393 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~ 393 (588)
++.+++.+-+.-... |..| .......+..++...+.++++++.|+...+ + ...++-.|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 444444433322221 2222 123334566677777778888887776542 1 23467788888888888
Q ss_pred hHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHhccCCchHHHHHHHHHhhhhc---CCCCC-hHHHHHHHHHHH
Q 007818 394 ALDAISYFSEMIG----VGLMPDEITF-----LGILSACCHGGLVDEGRKYFAQMSSIF---RLSPK-LKHYSCMVDLLG 460 (588)
Q Consensus 394 ~~~a~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~ 460 (588)
+++|+-+.....+ .++.--...| ..+.-++-..|....|.+..++..+.. |-.+. ......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8888877665433 2222111222 233445666777777777777765431 22221 344557788888
Q ss_pred hcCChHHHHHHHHhC
Q 007818 461 RSGLLEEAEQLIRSM 475 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~ 475 (588)
..|+.+.|..-|+.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888887777653
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.87 E-value=12 Score=40.80 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHH
Q 007818 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 298 (588)
...+..-.+.|-++.|+.++.-=.+.-...|.+...-+.....+++|.-.|+..-+ ....+.+|...|+|.+|+.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHH
Confidence 33334444455555555444332222223333334444444444444444443322 1223445556677777777
Q ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 299 LFHEMQATGIKPDAVT--TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 299 ~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+..++... -|... -..|...+...++.-+|-++..+.... ....+..+++...+++|.++-....
T Consensus 987 ~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 987 LAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 76655321 12111 134445555555555555554443322 1233444555556666666554443
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.70 E-value=0.14 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
|..+...+...|++++|...++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444445555555555555555555554
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.52 E-value=1.5 Score=35.88 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=6.6
Q ss_pred CChhHHHHHHHhcCCC
Q 007818 229 GKLESAEEIFDSMVNK 244 (588)
Q Consensus 229 g~~~~A~~~~~~~~~~ 244 (588)
+..++|+.-|..+.+.
T Consensus 72 ~k~d~Alaaf~~lekt 87 (221)
T COG4649 72 NKTDDALAAFTDLEKT 87 (221)
T ss_pred CCchHHHHHHHHHHhc
Confidence 3344444444444333
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.48 E-value=0.13 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.179 Sum_probs=26.2
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+|..++.+|...|++++|++.++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999998754
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.28 E-value=4.1 Score=33.70 Aligned_cols=35 Identities=3% Similarity=0.021 Sum_probs=21.3
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
++.++.+.+.+++|+...+..++..+.+.|.....
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444555566677766777777777766665433
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.24 E-value=1.4 Score=42.16 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=53.8
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
......|+++.+...+.... ......+...+++.....|+++.|.....-++.-+-.++.+....+..-...|-++++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 33445566666666655542 2233445555555555666666666666666655555555554444444555666666
Q ss_pred HHHHHHHHhcCCccCCcee
Q 007818 535 GKVRKMMEERGVEKTPGCS 553 (588)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~ 553 (588)
.-.|+++...+.+.+.|+.
T Consensus 411 ~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 411 YHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHhccCChhcccce
Confidence 6666666655544444433
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.23 E-value=0.49 Score=42.66 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.++..+...|+++.+...++++++.+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555555555555443
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.19 E-value=3.9 Score=39.34 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDP----QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
....+|..++..+.+.|.++.|...+.++....+ ..|.+...-+..+...|+.++|...++.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3566888999999999999999999999988662 2567788889999999999999999999887333
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.18 E-value=0.16 Score=29.41 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
++..+...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677778888888888888888554
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.69 E-value=1.4 Score=35.85 Aligned_cols=90 Identities=19% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHH-HHHHHHHHHhcCChHHHHHHHHhCCCC-CCHhHHHHHHHHHHhhCCH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH-YSCMVDLLGRSGLLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNV 497 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 497 (588)
+..-.+.++.+.+..++..+.-. .|.... -..-...+.+.|++.+|..+|+++... |....-..++..|....+-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33445778899999998888753 454322 223345567889999999999998644 4444445555555544332
Q ss_pred HHHHHHHHHHhccCC
Q 007818 498 SIGERAAMKLLELDP 512 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p 512 (588)
..=.....++++..|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 323333444555554
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.47 E-value=0.19 Score=26.56 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=20.0
Q ss_pred chHHHHHHHHHccCChHHHHHHHH
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988876
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.45 E-value=13 Score=37.26 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=80.3
Q ss_pred CCChhhHHhhcccCC--CCChh-hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-ccCChhhHHH
Q 007818 25 SKNLDYCTKILFNVQ--NPNSF-SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-SLGLRFLGYE 100 (588)
Q Consensus 25 ~g~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 100 (588)
...++.++.+++.+- -|... -|......-.+.|..+.+.++|++..+ +++.+...|...+.-+. ..|+.+....
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334455555555543 34433 244555555678899999999999887 46555555555544333 6678888888
Q ss_pred HHHHHHHh-cCC-CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHH
Q 007818 101 IFGHVLKL-GFD-VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151 (588)
Q Consensus 101 ~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 151 (588)
.|+.++.. |.. .+...|...|..-..++++.....+++++.+-....++..
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 88888875 321 2345677777777778889999999888655434444433
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.43 E-value=7.7 Score=34.92 Aligned_cols=60 Identities=17% Similarity=-0.028 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.+......|...|.+.+|.++.++++.++|-+...+-.|...|...|+-=+|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556678899999999999999999999999999999999999999888888888774
No 292
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.30 E-value=0.018 Score=46.88 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 007818 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397 (588)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 397 (588)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3555666677777777777777666556677788888888888777888877773332 3334556666666666666
Q ss_pred HHHHHH
Q 007818 398 ISYFSE 403 (588)
Q Consensus 398 ~~~~~~ 403 (588)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666554
No 293
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.23 E-value=5.2 Score=32.23 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
..++..+...+.+......++.+...+ ..+...++.++..+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344444544455555555555554443 2333444444444443
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.18 E-value=31 Score=40.99 Aligned_cols=309 Identities=11% Similarity=0.011 Sum_probs=170.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhc----CCCC--cchHHHHHHHHHhcCCHHHHHHHhhh-CCCCCcccHHHHHHHHHhcCC
Q 007818 220 ALMDMYVKCGKLESAEEIFDSM----VNKT--VVSCTTMIVGYAKFGFLDIARKIFDD-LPEKYVVPWNAIIGGYVQAKR 292 (588)
Q Consensus 220 ~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 292 (588)
.+..+-.+++.+.+|...++.- .+.+ ...+..+...|...+++|...-+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4556677788888888888873 1111 12233344477777777776666553 22221 3334445667889
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH-HHHHHHHhHhcCChhHHHHHhc
Q 007818 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL-GTALVDMYAKCGNIAKALQVFH 371 (588)
Q Consensus 293 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~ 371 (588)
+..|...|+.+.+.+ ++...++..++......+.++......+-....- .+.... ++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 3336677777777777777777666544333221 112222 2222334456777777766655
Q ss_pred cCCCCCcchHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHhccCCchHHHHHHHHH
Q 007818 372 EMPERNSLTYTAI--IGGLALHG--KALDAISYFSEMIGVGLMPD-------E--ITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 372 ~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
..+..+|.+. .....+.. +.-.-...++.+++.-+.|- . ..|..++..+.-.. .+...+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~---- 1614 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIE---- 1614 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHH----
Confidence 4455556554 23322222 22222233333333211110 0 12333322221110 011111
Q ss_pred hhhhcCCCCCh------HHHHHHHHHHHhcCChHHHHHHH---HhC----CCCC-----CHhHHHHHHHHHHhhCCHHHH
Q 007818 439 MSSIFRLSPKL------KHYSCMVDLLGRSGLLEEAEQLI---RSM----PMAA-----DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 439 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~---~~~----~~~~-----~~~~~~~l~~~~~~~~~~~~A 500 (588)
...++.++. ..|..-+. +.+....+.+-+ ++. ..+| -...|......++..|.++.|
T Consensus 1615 --~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1615 --ELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred --HhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111222321 12221111 222222222222 111 1122 356899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
-..+-++.+..+ |.++.-.+..+...|+...|+.+++...+...+.
T Consensus 1690 ~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1690 QNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999999988885 6788889999999999999999999998766544
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.04 E-value=0.38 Score=43.71 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=69.3
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~ 496 (588)
-..-|.++|.+++|+..|...... .+-++..+..-..+|.+...+..|+.-.+.+. .. .-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999988753 23377777788888999998888776665542 11 123344444555556788
Q ss_pred HHHHHHHHHHHhccCCCCCc
Q 007818 497 VSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~ 516 (588)
..+|.+-++.++++.|++..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88999999999999997543
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=5.8 Score=33.42 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=11.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
-++++...|+.++|+.-|+...+.
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 344444445555555444444443
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.92 E-value=1.3 Score=36.11 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=60.6
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHhCC-CCCCHhHHHHHH-HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 450 KHYSCMVDLL---GRSGLLEEAEQLIRSMP-MAADVVVWGALF-FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 450 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+...|+..+ .+.++.+++..++..+. .+|.......+- ..+...|++.+|+++++.+.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555543 47788999999998884 566544443332 236688999999999999988888888888888888
Q ss_pred HHccCChH
Q 007818 525 YRDSNMWE 532 (588)
Q Consensus 525 ~~~~g~~~ 532 (588)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 88888763
No 298
>PRK10941 hypothetical protein; Provisional
Probab=91.68 E-value=1 Score=40.72 Aligned_cols=62 Identities=19% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+-.++.+.++++.|.++.+.++.+.|++|.-+.-.+-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566678899999999999999999999999999999999999999999999999987653
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.61 E-value=1.3 Score=35.36 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHhCC-CCCCHhHHHHH-HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 450 KHYSCMVDLL---GRSGLLEEAEQLIRSMP-MAADVVVWGAL-FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 450 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+.+.|++.. ...++++++..+++.+. ..|+..-...+ ...+...|++.+|.++++.+.+..|..|..--.++.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444454443 35788888888888874 45543333222 2235688899999999999988888777777778888
Q ss_pred HHccCChH
Q 007818 525 YRDSNMWE 532 (588)
Q Consensus 525 ~~~~g~~~ 532 (588)
+.-.|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 88888753
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.39 E-value=1.7 Score=34.74 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHHHH---HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhHHHHHHH
Q 007818 414 ITFLGILS---ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFF 489 (588)
Q Consensus 414 ~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~ 489 (588)
...+.++. .-...++.+++..++..+.-...-.+...++ -...+...|++.+|..+|+++...+ ....-..++.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 34444444 3446889999999999998542222223333 3445789999999999999997554 3333333333
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.|....+ +| .|...+......|.-.++..+.+.+.
T Consensus 86 ~CL~al~--------------Dp----~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 86 LCLNAKG--------------DA----EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHhcC--------------Ch----HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 3433211 12 46666666666667777777777776
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.24 E-value=0.46 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+..++.++.+.|++++|.++|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.20 E-value=8.3 Score=32.54 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH-----HHHHHHHhcCChHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFL--GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS-----CMVDLLGRSGLLEEA 468 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A 468 (588)
+.....+.+....-....-++. .+...+...|++++|..-++..... |....+. .|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665542121112222 3355677889999999998887753 2222222 456677889999999
Q ss_pred HHHHHhCCCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 469 EQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 469 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
+..++....+ -.......-...+...|+-++|...|+++++..+.
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999887532 12223344455688899999999999999988753
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.19 E-value=1.9 Score=36.54 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHhCCCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHccCChH
Q 007818 459 LGRSGLLEEAEQLIRSMPMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ----DSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 532 (588)
+.+.|+ ++|++.|-.+...| +.......+..|....|.+++++++-+++++.+. ||.++..|+.++.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 445565 67888887775444 3444555555666678999999999999987643 6889999999999999999
Q ss_pred HHH
Q 007818 533 EAG 535 (588)
Q Consensus 533 ~A~ 535 (588)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.12 E-value=2.6 Score=35.55 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh------HH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI--TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL------KH 451 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 451 (588)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..++......+++..+.....++........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566777777777777888777777765444443 45666777777778887777777765531111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
|..+ .+...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345678888888876663
No 305
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.06 E-value=0.49 Score=26.76 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=26.1
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.02 E-value=8 Score=32.03 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC--ChhHHHHHhccCC
Q 007818 64 DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG--DLGLACNVFDESC 141 (588)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 141 (588)
+....+.+ .+++|+...+..++..+.+.|++.. +..+++.++-+|.......+-.+.... -..-|..++.++.
T Consensus 15 EYirSl~~-~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 33444444 5666776677777777777666443 344445554444443333222221111 0223333333332
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
..+..+++.+...|++-+|+++.+..... +......++.+..+.+|...--.+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24455666666777777777766554221 112223445555555554444444444333
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.90 E-value=0.33 Score=27.17 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
+..+..++.+.|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777888999999999999999999963
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.86 E-value=22 Score=36.71 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=120.6
Q ss_pred hcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHcccC-----ChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 007818 289 QAKRSKEALALFHEMQA-------TGIKPDAVTTVHCLSACSQLG-----ALDDGIWIHRFIEKENFNLNVVLGTALVDM 356 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (588)
...+.+.|+..|+.+.+ .|.+ .....+..+|.+.. +...|..++....+.|. |+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 44556666666666655 3311 12333334443322 44556666666665552 222222222211
Q ss_pred hHh-cCChhHHHHHhccCCCC-CcchHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 357 YAK-CGNIAKALQVFHEMPER-NSLTYTAIIGGLA----LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 357 ~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
... ..+...|.++|....+. ....+-.+...|. ...+...|..++.+..+.| .|....-...+..+.. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 13456666666665532 2333333333222 2345677777777777766 4433322333333333 5555
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHH---Hh----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLL---GR----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSI 499 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 499 (588)
.+.-.+..+... +.......-..+.... .. ..+...+...+.+...+-+......+...|.. ..+++.
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 555554444443 3222111111111111 00 12445556666655444445555555544432 236778
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHcc-C--ChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDS-N--MWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 545 (588)
|...+.++.+.. +....+++..+... | .+..|.++++...+.+
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 888888887766 66777777777642 2 2577888887776543
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.86 E-value=0.47 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=23.6
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+++.|+.+|...|++++|.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998865
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=11 Score=32.95 Aligned_cols=23 Identities=4% Similarity=-0.156 Sum_probs=13.8
Q ss_pred HhhCCHHHHHHHHHHHhccCCCC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
...+++.+|+.+|++......+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44566667777776665544433
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.76 E-value=18 Score=35.57 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=108.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (588)
|-...-+++..+..+..+.-...+-.+|.. +..+...|..++++|... ..++-..+++++.+..+ .|+..-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 445566777888887777777778888877 445667788888888877 55777888888888664 3333334444
Q ss_pred HHHHhCCChhHHHHHhccC-----CCC-Cc---ccHHHHHHHHHhCCChhHHHHHHHHhHHC-CCCCCcchHHHHHHHHh
Q 007818 122 HVFVSCGDLGLACNVFDES-----CVR-NL---VSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACA 191 (588)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~~-----~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 191 (588)
..|- .++...+...|.+. ++. +. ..|..+.... ..+.+..+.+....... |..--...+-.+-..|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 47777777777652 111 11 1344443321 34566666666666433 33334445555666777
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 007818 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225 (588)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (588)
...++.+|.+++..+.+..-+ |......++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 778888888888877776433 444444444443
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.46 E-value=2.9 Score=37.91 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh----hcCCCCChHHHHHHHH
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS----IFRLSPKLKHYSCMVD 457 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~ 457 (588)
..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 334444444455555555555555442 33444555555555555555555555554433 1255555554444443
Q ss_pred H
Q 007818 458 L 458 (588)
Q Consensus 458 ~ 458 (588)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.33 E-value=0.61 Score=38.48 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCCC-HhHHHHHHHHHHhhC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHc-cCChHHHHHHHHHHHh
Q 007818 477 MAAD-VVVWGALFFACRLHG-----------NVSIGERAAMKLLELDPQDSGIYVLLANMYRD-SNMWEEAGKVRKMMEE 543 (588)
Q Consensus 477 ~~~~-~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 543 (588)
++|+ ..++..+..++..++ -+++|...|+++...+|+| ..|.+ .....+|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHH
Confidence 4554 345666666654332 2456666777777788865 24432 3556677777777766
Q ss_pred cCCcc
Q 007818 544 RGVEK 548 (588)
Q Consensus 544 ~~~~~ 548 (588)
.+...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 65443
No 314
>PRK12798 chemotaxis protein; Reviewed
Probab=90.23 E-value=18 Score=34.75 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=113.7
Q ss_pred cCChhHHHHHhccCCC----CCcchHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchH
Q 007818 360 CGNIAKALQVFHEMPE----RNSLTYTAIIGG-LALHGKALDAISYFSEMIGVGLMPDEI----TFLGILSACCHGGLVD 430 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~ 430 (588)
.|+..+|.+.+..+.. +....|-.|+.+ .....++..|+++|++.+-. .|... ....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888763 244456666665 44567889999999987663 45433 3444455667889999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHH-HHHHHHhcC---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSC-MVDLLGRSG---LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
++..+-......+...|-..-|.. +...+.+.+ ..+.-..++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888887777776555555443332 333333333 3455556666664333456788888888889999999999999
Q ss_pred HhccCCCCCchHHHHHHHH-----HccCChHHHHHHHHHH
Q 007818 507 LLELDPQDSGIYVLLANMY-----RDSNMWEEAGKVRKMM 541 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 541 (588)
+..+... ...-...+..| .-..++++|.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9887643 22222222222 2345566666555544
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.19 E-value=20 Score=35.24 Aligned_cols=190 Identities=10% Similarity=0.069 Sum_probs=106.9
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
|.....+++..+...-+.+-++.+-.++.. .+-..|..++..|... ..++-..+|+++.+.. -.|.+.-..+...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHH
Confidence 444455666666666666666666666552 4555666777777766 4566677777776643 12223333333333
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCC------hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHhHHHHHHHHHHh
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPK------LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAADVVVWGALFFACRL 493 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~ 493 (588)
.+ ++...+..+|.++... +-|. ...|..+.... ..+.+....+...+. ...-...+..+..-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 6666777777776653 2221 12333333211 234455555554442 11223344455555666
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc--------------------cCChHHHHHHHHHHH
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD--------------------SNMWEEAGKVRKMME 542 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 542 (588)
..++.+|++++..+++.+..|..+...++.-+.. -.++-++..-|+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 7788888888888888777776666666655544 345666666666664
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=2 Score=38.91 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhc
Q 007818 58 KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109 (588)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 109 (588)
+++.++.++..=.+ .|+-||..+++.++..+.+.+++..|.++...|....
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 55566666666555 6666666666666666666666666666666665544
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=12 Score=32.60 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 007818 495 GNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~ 513 (588)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 5555666666666666665
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.02 E-value=0.58 Score=28.51 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
..|+.+|...|+.+.|+++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3578888888888888888888876543
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.02 E-value=14 Score=34.25 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc--c----CChhhHHHHHHHHHHhcCC---CChhHHHHHHH
Q 007818 59 MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS--L----GLRFLGYEIFGHVLKLGFD---VDMYVHNAVIH 122 (588)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~ 122 (588)
+++.+++++.+.+ .|++-+..+|.+..-.... . ....++..+++.|++..+- ++-.++..++.
T Consensus 78 ~~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 78 FKEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 3455678888888 7787777666543332222 1 2356788899999987632 33344444443
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.01 E-value=0.94 Score=33.05 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+++.++.+|+|......++..+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345566666777777777777777777777777777776666554
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.97 E-value=2.8 Score=35.39 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc--chHHHHHHHHhccCChhHHHHHHHHHHHh
Q 007818 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE--VTMIGMVSACAQLEDLNLGREIHWYISES 209 (588)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 209 (588)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.+.-.+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777788888888888888887776444332 24556677777777777777777666554
No 322
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=26 Score=36.21 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 007818 49 AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90 (588)
Q Consensus 49 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (588)
+-++|...|++++|++.--.......+.++...+.+++.-|.
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 346888889999999877665534556777777777665444
No 323
>PRK09687 putative lyase; Provisional
Probab=89.76 E-value=16 Score=33.60 Aligned_cols=45 Identities=2% Similarity=-0.131 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 258 (588)
+..+....+.++.+.++.+....+..-+..++...-...+.++.+
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 445555556666665554333333333334444444444444443
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.27 E-value=0.9 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
+++.+...|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455556666666666666666666654
No 325
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.25 E-value=18 Score=33.36 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=13.9
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 007818 522 ANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+..+.+.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445666777777777776543
No 326
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.02 E-value=16 Score=32.50 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=121.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHcccCChhHHHHHHHHHHH----h-CCCCcchHHHH
Q 007818 283 IIGGYVQAKRSKEALALFHEMQAT---GI--KPDAVTTVHCLSACSQLGALDDGIWIHRFIEK----E-NFNLNVVLGTA 352 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~ 352 (588)
++..+.+.+++++.++.|+++..- .+ .-+..+.+.++...+...+.+.-..+++.-.+ . +-..-..+-+-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 344455555555555555554321 01 12334455555555555555554444432221 1 11112223345
Q ss_pred HHHHhHhcCChhHHHHHhccCCCC---------------CcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPER---------------NSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITF 416 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~ 416 (588)
|...|...+.+....++++++.+. -...|..-+..|..+++......+|++...- ..-|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 667777778888777777776521 1235777788888888888888888876542 235666655
Q ss_pred HHHHHH----hccCCchHHHHHHHHHhhhhc---CCCCCh--HHHHHHHHHHHhcC----ChHHHHHHHHhCCCCCCHhH
Q 007818 417 LGILSA----CCHGGLVDEGRKYFAQMSSIF---RLSPKL--KHYSCMVDLLGRSG----LLEEAEQLIRSMPMAADVVV 483 (588)
Q Consensus 417 ~~l~~~----~~~~~~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~ 483 (588)
..+-.+ +.+.|++++|..-|-++-+.+ |-+-.. --|..|+..+.+.| +-++|. -....|....
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlA 306 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILA 306 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHH
Confidence 544332 345788888765444443322 222212 23455666666665 111211 0123466667
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
...++.+|. .++..+-++++..-...--+||.+..+.
T Consensus 307 MTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 307 MTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHHHh-cccHHHHHHHHHhhhccccccHHHHHHH
Confidence 788888874 4455444444433333333455554443
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.92 E-value=6.2 Score=28.83 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.-++.+-++.+....+-|++......+++|-+.+|+..|.++++.++.+-+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446667777777788899999999999999999999999999998886422 24445665554
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.86 E-value=2 Score=31.56 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+..+-+..+....+-|++......+++|-+.+++..|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666777777778899999999999999999999999999999988633 33336766664
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.69 E-value=20 Score=33.25 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc--cCC----hhHHHHHHHHHHHhCCC---CcchHHHHHHHHhHhcCCh
Q 007818 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQ--LGA----LDDGIWIHRFIEKENFN---LNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 293 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 363 (588)
+++.+.+++.|.+.|+.-+..+|.+....... ..+ ...+..+++.|.+..+- ++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667888889999888877776653333222 222 33455666666555321 112222222111 11111
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCc--hHHHHHHHHHh
Q 007818 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI--TFLGILSACCHGGL--VDEGRKYFAQM 439 (588)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 439 (588)
+. -.+.+..+|+.+.+.|+..+.. ....++..+....+ ..++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245667777777777665543 33334433333322 34777888888
Q ss_pred hhhcCCCCChHHHHHHHH
Q 007818 440 SSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~ 457 (588)
.+. ++++....|..++-
T Consensus 209 ~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHc-CCccccccccHHHH
Confidence 887 88877776665544
No 330
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.60 E-value=0.56 Score=26.71 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
|-+...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344666666666666666666664
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.49 E-value=1.3 Score=28.30 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445678999999999999999999998866544
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.03 E-value=16 Score=31.41 Aligned_cols=107 Identities=12% Similarity=-0.064 Sum_probs=57.3
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH--HHhccCChhHHHHHHHHHHHhCCC-CChhhH
Q 007818 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS--ACAQLEDLNLGREIHWYISESGLT-LTVPLA 218 (588)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 218 (588)
+.-+..||.+.-.+...|+++.|.+.|+...+.. |. .-|..+=+ ++.-.|++..|.+-+....+.... |-...|
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 3345678888888888888998888888887653 22 12322222 233457777777766666555322 222222
Q ss_pred HHHHHHHHhcCChhHHH-HHHHhcCCCCcchHHHHHH
Q 007818 219 NALMDMYVKCGKLESAE-EIFDSMVNKTVVSCTTMIV 254 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ll~ 254 (588)
.-+.. ..-++.+|. .+.++....|..-|...|.
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV 206 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIV 206 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHH
Confidence 22221 223444444 3344444455455544433
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.93 E-value=0.6 Score=37.90 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhH
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677778888899999999999877667788899999999999888888888884332 334556666777777777
Q ss_pred HHHHHHHhH
Q 007818 164 AIRLFRDMQ 172 (588)
Q Consensus 164 a~~~~~~m~ 172 (588)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.80 E-value=1.1 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.35 E-value=1.9 Score=39.40 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (588)
..-|.++|.+++|+..|...+.. .| |++++..-..+|.+...+..|+.=...+... | ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 45699999999999999988774 56 8889988899999999998888777766642 1 23455555554
Q ss_pred -------ChHHHHHHHHhC-CCCCCHh
Q 007818 464 -------LLEEAEQLIRSM-PMAADVV 482 (588)
Q Consensus 464 -------~~~~A~~~~~~~-~~~~~~~ 482 (588)
...+|.+-++.. ..+|...
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 445554444433 3556543
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.33 E-value=42 Score=35.30 Aligned_cols=439 Identities=8% Similarity=-0.071 Sum_probs=219.2
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhc-CCCChhHHHHHHHHHHhCCChh
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLG 131 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 131 (588)
..+.|++..+..+...+.. ..+ ..-..|..+...+ .....++ +-.-+.+.. .+.....-..-+..+.+.+++.
T Consensus 43 a~~~g~~~~~~~~~~~l~d-~pL-~~yl~y~~L~~~l-~~~~~~e---v~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKD-YPL-YPYLEYRQLTQDL-MNQPAVQ---VTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHCCCHHHHHHHHHhccC-CCc-HhHHHHHHHHhcc-ccCCHHH---HHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 4567778777776666533 111 0111122221111 1112333 333333322 2233344445556667788888
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 007818 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211 (588)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 211 (588)
.....+.. .+.+....-....+....|+.++|.+....+=..| ......+..++..+.+.|.+
T Consensus 117 ~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l--------------- 179 (644)
T PRK11619 117 GLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ--------------- 179 (644)
T ss_pred HHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC---------------
Confidence 88884333 34455555566777888888888877777765444 23344555555555544433
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHH--Hh
Q 007818 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY--VQ 289 (588)
Q Consensus 212 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~ 289 (588)
+...+-.-+......|+...|..+...+..........++.... +...+...+.... ++...-..++.++ ..
T Consensus 180 --t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 180 --DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 22222333555566777777777777662221222223333322 2333333333221 1111111111122 23
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHH
Q 007818 290 AKRSKEALALFHEMQATG-IKPDAV--TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 366 (588)
..+.+.|..++....... ..+... ....+.......+..+.+...+...... ..+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456688888888775443 222222 1222322222332244555555443322 12444455556666788999999
Q ss_pred HHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-cCCchHH--HHHHHHHhh
Q 007818 367 LQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-HGGLVDE--GRKYFAQMS 440 (588)
Q Consensus 367 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~--a~~~~~~~~ 440 (588)
...+..|... ...-.-=+..++...|+.++|...|+.+.. ..+ .|..+...-. ..-.+.. .-..-..+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~~Lg~~~~~~~~~~~~~~~~~- 405 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQRLGEEYPLKIDKAPKPDSAL- 405 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHHHcCCCCCCCCCCCCchhhhh-
Confidence 9999988742 223334466776778999999999998743 222 3333332211 1101100 00000000
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC---CCCCch
Q 007818 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD---PQDSGI 517 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 517 (588)
...| -..-+..+...|+...|...+..+....+......+.......|.++.++....+....+ -.-|..
T Consensus 406 ---~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~ 478 (644)
T PRK11619 406 ---TQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLA 478 (644)
T ss_pred ---ccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcc
Confidence 0011 122345566789999998888776444555555666556667888888887765443211 011234
Q ss_pred HHHHHHHHHccCChHHHH
Q 007818 518 YVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~ 535 (588)
|...+..+.+.-..+.++
T Consensus 479 ~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 479 WNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred hHHHHHHHHHHcCCCHHH
Confidence 555555555544555544
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.09 E-value=6.7 Score=34.30 Aligned_cols=58 Identities=12% Similarity=-0.093 Sum_probs=46.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+...|++-++++...+++...|.|..+|..-+.+....=+..+|.+-|..+.+..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344567888888888888888888888888888888888888888888888887654
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.69 E-value=3 Score=35.67 Aligned_cols=61 Identities=21% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHh-CCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 454 CMVDLLGRSGLLEEAEQLIRS-MPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.-+..+.+.+...+|+...+. .+.+| +...-..++.-++-.|++++|..-++-+-++.|++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344555666677777666543 34455 44455555566677777777777777777776653
No 339
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=14 Score=33.21 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHcccCChhH
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTT-------VHCLSACSQLGALDD 330 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------~~l~~~~~~~~~~~~ 330 (588)
.+-..+.+++++|+..+.++...|+..|..+. ..+...|...|+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 34456777888999999998888877665543 334444444444443
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=11 Score=37.77 Aligned_cols=152 Identities=16% Similarity=0.051 Sum_probs=95.7
Q ss_pred hHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
..-.|+++.|..++..++++ .-+.++.-+.++|-.++|+++ .+|+.- -.....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHH
Confidence 34567888888877777643 234455556667777776654 233221 122334568888888776
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+...+.+...+|
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 5553 34568888888889999999998887763 24555555666676665555555554444432
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHH
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
....+|...|++++..+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3344667788888887776543
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=6.3 Score=39.29 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=87.5
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 007818 81 TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160 (588)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (588)
..+.++.-+.+.|-.++|+.+ .+|+.. -.....+.|+++.|.++..+. .+..-|..|.++..+.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhccc
Confidence 344555666666666665543 233221 233445778888888877654 356678999999999999
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |...-+|...|+++++.+++..
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 9999999887654 445666777777777666666666665543 4444566777888888777655
Q ss_pred c
Q 007818 241 M 241 (588)
Q Consensus 241 ~ 241 (588)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=47 Score=34.71 Aligned_cols=143 Identities=14% Similarity=0.219 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCC-CCcccHHHHHHHHHhcCChH
Q 007818 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE-KYVVPWNAIIGGYVQAKRSK 294 (588)
Q Consensus 216 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 294 (588)
.+...++..+...|++++|-...-.|...+..-|...+..+...++......++-.-.. .++..|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 34556677777788888888888887777777777666666666655444333322222 233347777777666 2222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 295 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
. |.+.+.. .+++...-..++++. . .++.+. .-+..+...|+..|...+++..|.+++-...
T Consensus 472 ~----F~e~i~~-Wp~~Lys~l~iisa~--~----------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 472 G----FLELIKE-WPGHLYSVLTIISAT--E----------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred H----HHHHHHh-CChhhhhhhHHHhhc--c----------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 2 2222221 122222211222211 0 111111 1122333458889999999999999998887
Q ss_pred CCCc
Q 007818 375 ERNS 378 (588)
Q Consensus 375 ~~~~ 378 (588)
+++.
T Consensus 533 ~~~v 536 (846)
T KOG2066|consen 533 DKDV 536 (846)
T ss_pred ChHH
Confidence 6543
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.43 E-value=12 Score=31.80 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=56.3
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCCh-----HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhC
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKL-----KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHG 495 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~ 495 (588)
+...|++++|..-|..+... .++.. ..|..-..++.+.+.++.|.+-.... .+.|. ...+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44556666666666666652 22221 22333344555666666666555443 33342 223333345667777
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 496 NVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.++.|+.-|+++++.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888875544444443
No 344
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=2.5 Score=36.69 Aligned_cols=83 Identities=10% Similarity=0.040 Sum_probs=36.7
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHH-HHHhhCCHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKL-KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFF-ACRLHGNVSI 499 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~ 499 (588)
|.....++.|+..+.+... +.|+. .-|+.-+..+.+..+++.+.+--.+. .+.|+..--...+. +......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4444455555555554442 23443 33334444444555555444333322 23344332222222 2334455555
Q ss_pred HHHHHHHHh
Q 007818 500 GERAAMKLL 508 (588)
Q Consensus 500 A~~~~~~~~ 508 (588)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555555553
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.84 E-value=3.3 Score=40.98 Aligned_cols=99 Identities=16% Similarity=0.039 Sum_probs=68.3
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhhCCHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM-P-MAADVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A 500 (588)
..|+...|...+..+... .|- ......|...+.+.|....|-.++.+. . ....+.++..+.+++....++++|
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 467888888887776532 332 223445666667777777777776543 2 234556677777888888888899
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
++.++.++++.|+++.+-+.|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999988888888777655433
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.70 E-value=0.68 Score=42.31 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=67.6
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 461 RSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
..|.+++|++.|.... ..| ....+..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 5677888888877653 333 44455555666777778888888888888888888777877787888888888888888
Q ss_pred HHHHhcCCccCCc
Q 007818 539 KMMEERGVEKTPG 551 (588)
Q Consensus 539 ~~~~~~~~~~~~~ 551 (588)
....+.++.+..+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 8888877765543
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.50 E-value=1.8 Score=23.36 Aligned_cols=30 Identities=30% Similarity=0.109 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+..+...+...|+++.|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 466777788899999999999999998877
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.45 E-value=61 Score=34.55 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=73.1
Q ss_pred hcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH---HHHHHH--HHHH
Q 007818 390 LHGKALDAISYFSEMIGV----GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK---HYSCMV--DLLG 460 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~--~~~~ 460 (588)
..|+++.|..+.+..... -..+....+..+..+..-.|++++|..+.....+. .-.-+.. .|..+. ..+.
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHH
Confidence 456666666666655443 11223334555555566667777777666655443 1112222 222222 2344
Q ss_pred hcCChHHHH--HHHHhC-----CCCC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc----CCC--CCc-hHHHHH
Q 007818 461 RSGLLEEAE--QLIRSM-----PMAA----DVVVWGALFFACRLHGNVSIGERAAMKLLEL----DPQ--DSG-IYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~--~~~~~~-----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~-~~~~l~ 522 (588)
.+|+...+. ..+... ..+| -..+...++.++.+ ++.+..-..+.+++ .|. ++. .+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 555322222 222222 1112 22344444444433 34444433333332 232 111 123677
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.++...|+.++|...+.++......+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 77778888888888877776544333
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.14 E-value=18 Score=33.06 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=66.2
Q ss_pred cCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC-------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc
Q 007818 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV-------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181 (588)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (588)
|.+....+...++..-....+++.++..+=++.. ++... .+.++.+. .=++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444555555566655556777777776644321 12211 12233222 336778888888888889999999
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHh
Q 007818 182 TMIGMVSACAQLEDLNLGREIHWYISES 209 (588)
Q Consensus 182 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 209 (588)
+++.+|..+.+.++...|.++.-.+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999998888887777665
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.81 E-value=24 Score=32.11 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc-cC-ChhhHHHHHHHHHHh-cCCCChhHHHHHHH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LG-LRFLGYEIFGHVLKL-GFDVDMYVHNAVIH 122 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 122 (588)
|..|+. ++.-..+|+.+|+....+..+--|......+++.... .+ ....-.++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 665553 3345678888887432212255566777777776664 22 344445555555543 34678888899999
Q ss_pred HHHhCCChhHHHHHhccC-----CCCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 007818 123 VFVSCGDLGLACNVFDES-----CVRNLVSWNSLINGFVRSGFPREAIRLFRD 170 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (588)
.+++.+++..-.+.++.. +..|...|..+|......|+..-...+.++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999999999873 345888999999999999998766666554
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.28 E-value=64 Score=33.89 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=42.2
Q ss_pred hHHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCCCcc-----cHHHHHHHHHccCChhhHHHHHHHHHHhcCC----CCh
Q 007818 45 SWNVAIRGFL-ETGKMREAVDLYKQMLRNGGTRPDNF-----TYPLLFKVCASLGLRFLGYEIFGHVLKLGFD----VDM 114 (588)
Q Consensus 45 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 114 (588)
++-.+...+. ...+.+.|...+++... ..-+++.. ....++..+.+.+... |...++..++.--. +-.
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~-l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAIL-LCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 4555555555 45667777777766543 11112211 1123334444444333 66666665553211 111
Q ss_pred hHHHHH-HHHHHhCCChhHHHHHhcc
Q 007818 115 YVHNAV-IHVFVSCGDLGLACNVFDE 139 (588)
Q Consensus 115 ~~~~~l-~~~~~~~~~~~~A~~~~~~ 139 (588)
..+..+ +..+...+++..|.+.++.
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 222222 2222223566666666655
No 352
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.59 E-value=10 Score=28.05 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=33.4
Q ss_pred CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
..-|++....+.+.+|.+.+++..|+++++-+...-.+...+|..++.
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 355888899999999999999999999998887655544447766653
No 353
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.54 E-value=27 Score=29.00 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=67.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH-HHHHH--HHHHHhcCC
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK-HYSCM--VDLLGRSGL 464 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~ 464 (588)
.+.+..++|+.-|..+.+.|...=+. .-..........|+...|...|.++-.. .-.|... -...| ...+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45566777777777777765432221 2222334455677777777777777654 2222211 11111 223456777
Q ss_pred hHHHHHHHHhCCCC--C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 465 LEEAEQLIRSMPMA--A-DVVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 465 ~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
++......+-+..+ | ....-..|..+..+.|++..|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777766665322 2 233444555566677788888777777765
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.43 E-value=2.8 Score=21.99 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~ 473 (588)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666655554
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.18 E-value=11 Score=27.68 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 007818 58 KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122 (588)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (588)
+.-++.+-++.+.. ..+-|++....+.+++|.+.+++..|.++++-++... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34456666666666 5577888888888888888888888888888776432 123445555544
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.95 E-value=26 Score=33.95 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhc--cCCchHHHHHHHHHhhhh
Q 007818 386 GGLALHGKALDAISYFSEMIGVGLMPDEI--TFLGILSACC--HGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 442 (588)
..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778899999999988876 555554 4455555554 456788888888887763
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.93 E-value=38 Score=30.30 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=104.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHcccCChhHHHHHHHHHHH---hCC--CCcchHHHHHHHHhHhc
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAV---TTVHCLSACSQLGALDDGIWIHRFIEK---ENF--NLNVVLGTALVDMYAKC 360 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 360 (588)
+....++|+.-|++..+..-.-..+ .+..++....+.+++++....++++.. +.+ ..+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888999999887754333333 445567778888888888887776642 222 22344567777766666
Q ss_pred CChhHHHHHhccCCC-----CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHHH
Q 007818 361 GNIAKALQVFHEMPE-----RNSL----TYTAIIGGLALHGKALDAISYFSEMIGVGL----MPDE-------ITFLGIL 420 (588)
Q Consensus 361 ~~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~-------~~~~~l~ 420 (588)
.+.+--..+|+.-.+ ++.. +-.-|...|...+.+....++++++.+.-- ..|. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666655555544321 2222 234566777777777777777777765411 1111 2455556
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH----HHHHhcCChHHHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV----DLLGRSGLLEEAE 469 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~ 469 (588)
+.|..+.+-.+-..+++....--.--|.+.....+- ....+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 666666666666667766654323445544433221 1234556666664
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.67 E-value=18 Score=30.92 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh---CCCCChhhHHHHHHHHHhcCCh
Q 007818 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES---GLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.+.|+ +.|.+.|-.+...+.--++. .-..+..|....+.+++.+++....+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 57788887777666443433 334444555577888888888887765 3367888899999999999988
Q ss_pred hHHH
Q 007818 232 ESAE 235 (588)
Q Consensus 232 ~~A~ 235 (588)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.85 E-value=9.5 Score=31.78 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcC----ChHHHHHHHHhC--------CCCCCHhHHHHHHHHHH
Q 007818 430 DEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSG----LLEEAEQLIRSM--------PMAADVVVWGALFFACR 492 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g----~~~~A~~~~~~~--------~~~~~~~~~~~l~~~~~ 492 (588)
++|+.-|++.. .+.|+ ...+..+..+|...+ +..+|.++|++. ..+|+...|..-+....
T Consensus 52 edAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34444444444 34566 477778888776544 344444544443 25688888887776654
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.83 E-value=3.6 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
|+.+.|..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888899999999889888888777653
No 361
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.65 E-value=62 Score=31.99 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=51.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhc
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 109 (588)
+.|+..|...+.-+.+.+.+.+.-.+|.+|...++..||...+.+.-. +....+++.|..++...++.+
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcC
Confidence 348888988888888888899999999999886666666666544322 334445888999988888755
No 362
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=82 Score=33.08 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=92.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPD---NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
++-+.+.+.+++|+++.+.... ..|. .......+..+...|+++.|-...-.|.. .+..-|..-...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 5566778888999888776533 3342 23355566677777888888777777765 345555555566666
Q ss_pred CCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHH
Q 007818 127 CGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205 (588)
Q Consensus 127 ~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 205 (588)
.++......++-...+ -+...|..++..+.. .+ ..-|.+.++ ..+...|..+.-.-+...++
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~---~Wp~~Lys~l~iisa~~~q~--------- 498 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIK---EWPGHLYSVLTIISATEPQI--------- 498 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHH---hCChhhhhhhHHHhhcchHH---------
Confidence 6665555444444333 355567777776665 22 222223322 12223333222111111111
Q ss_pred HHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 007818 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245 (588)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 245 (588)
.+. .-+......|+..|...+++..|..++-.+.+.+
T Consensus 499 -~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 499 -KQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred -Hhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 111 1122233447888888888888888877776554
No 363
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.93 E-value=15 Score=26.28 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHH
Q 007818 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 265 (588)
+.+++..+.+.|+- +......+-.+-...|+.+.|.++++.+. +.+..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34455555555533 22222322222234577777777777777 7677777777777666655444
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.65 E-value=22 Score=26.25 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHH
Q 007818 94 LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL 173 (588)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 173 (588)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-+|... +.|-.++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456666666666654311 222333344567788999999999999999999998877553 56666777777777776
Q ss_pred CCCCCCcchH
Q 007818 174 ERVEPDEVTM 183 (588)
Q Consensus 174 ~~~~p~~~~~ 183 (588)
.| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.54 E-value=49 Score=30.11 Aligned_cols=158 Identities=12% Similarity=0.060 Sum_probs=77.1
Q ss_pred CCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHH----hHHCCCCCCcchHHHHHHHHhccCChh-HHHH
Q 007818 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD----MQLERVEPDEVTMIGMVSACAQLEDLN-LGRE 201 (588)
Q Consensus 127 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~ 201 (588)
.+++++|.+++-+. ...+.+.|+...|.++-.- +.+.++++|......++..+...+.-+ .-.+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45566666555432 2233444444444333222 233455555555455554444332211 2223
Q ss_pred HHHHHH---HhC--CCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 202 IHWYIS---ESG--LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 202 ~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
+.+.+. +.| ..-++..+..+...|.+.|++..|+..|-.-..++...+..++......|...+..-.
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf-------- 143 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF-------- 143 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH--------
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH--------
Confidence 333332 222 2236778899999999999999999887665444444443344444444443333111
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQAT 306 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 306 (588)
....+-.|...++...|...+....+.
T Consensus 144 ---i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 144 ---IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 223344567778888888877776654
No 366
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.30 E-value=32 Score=33.06 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=43.0
Q ss_pred CcchHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-cCCchHHHHHHHHHhhh
Q 007818 377 NSLTYTAI---IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-HGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 377 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 441 (588)
|...|.++ +..+.+.|-+..|+++.+-+......-|+.....+|+.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 4556778888888888888887654446666666676654 66777777777776554
No 367
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.13 E-value=70 Score=31.66 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHH--HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFAC--RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
-+.+++.+.+.|-..+|..++.++. .+ |+...+..++..- ...-+...+..+|+.++.-...++..|......-..
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 3456777778888888888887774 22 3555555554432 122236667777777776555677788777777777
Q ss_pred cCChHHHHHHHHHHHh
Q 007818 528 SNMWEEAGKVRKMMEE 543 (588)
Q Consensus 528 ~g~~~~A~~~~~~~~~ 543 (588)
.|..+.+-.++.++.+
T Consensus 543 ~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMK 558 (568)
T ss_pred CCCcccccHHHHHHHH
Confidence 8888877777776654
No 368
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.88 E-value=17 Score=31.78 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhccC--CC----CCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 498 SIGERAAMKLLELD--PQ----DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 498 ~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
..|...|+++.+.. |. ...+...++.+..+.|++++|.+.|.++...+-
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34556666666443 22 245667788888999999999999999976543
No 369
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=80 Score=34.20 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCCChhhHHhhcccCCCCChhhH-----HHHHH---HHHhCCChHHHHHHHHHHHh
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSW-----NVAIR---GFLETGKMREAVDLYKQMLR 71 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~-----~~l~~---~~~~~~~~~~a~~~~~~~~~ 71 (588)
...++++|..+-+....|++... ..... -+..++++++|++.|+.+..
T Consensus 319 ~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 319 QEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 45567777776665554544432 12222 14456777777777777654
No 370
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.66 E-value=60 Score=30.11 Aligned_cols=116 Identities=11% Similarity=-0.117 Sum_probs=61.0
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCC
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG-------LLEEAEQLIRSMPMAADVVVWGALFFACRL----HGN 496 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 496 (588)
+..+|..+++++.+. |..+.......+...|...+ +...|...+.++...-+......+...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666654 43332222333333333321 223566666655333333333344433322 336
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccC---------------ChHHHHHHHHHHHhcCCc
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSN---------------MWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 547 (588)
.++|...|.++.+.+. ......++ .+...| +...|...+......+.+
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 7777778877777666 44555555 555444 666777777776665544
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.60 E-value=70 Score=30.82 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHH-ccCChHHHHHHHHHHHh
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQ-DSGIYVLLANMYR-DSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 543 (588)
..+..+.+.|-+..|.++.+-++.++|. ||-.....++.|+ ++++++--+++.+....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3444567888999999999999999998 8888888888775 77888877877776654
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.30 E-value=13 Score=29.28 Aligned_cols=72 Identities=15% Similarity=-0.007 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHhCC--CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 446 SPKLKHYSCMVDLLGRSGLL---EEAEQLIRSMP--MAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
.++..+--.+..++.+..+. .+...+++++- ..| +-....-+.-++.+.++++.+.++.+.+++.+|+|+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45666666677777776644 44555666552 223 22233344456778888888888888888888876543
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.08 E-value=8.6 Score=28.34 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=36.5
Q ss_pred HhhCCHHHHHHHHHHHhccCCCC---------CchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 492 RLHGNVSIGERAAMKLLELDPQD---------SGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+.|++..|...+.+........ ..+...++.+....|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46677777777666665433221 23455678888889999999999998865
No 374
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.54 E-value=1e+02 Score=32.30 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHhcCChHHHHHHHHhCCCCC
Q 007818 459 LGRSGLLEEAEQLIRSMPMAA 479 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~ 479 (588)
+...|++++|++.++++..-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 468899999999999997666
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.53 E-value=16 Score=26.17 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 007818 98 GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164 (588)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (588)
+.++++.+.+.|+ .+......+-.+--..|+.+.|.++++.+. ..+..|..++.++...|..+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4456666666664 333333333332234577777777777777 7777777777777776665444
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.44 E-value=36 Score=26.92 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhc-cCCC-CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 497 VSIGERAAMKLLE-LDPQ-DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 497 ~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
..+.+.+++.+++ -.|. .......|+-.+.+.|+|++++++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555554 2232 233344455555566666666655555544
No 377
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.02 E-value=16 Score=28.21 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
+..+-+..+..-.+-|++......+++|-+.+|+..|.++|+-++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34555666667778999999999999999999999999999999874 334444565554
No 378
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=75.96 E-value=48 Score=28.06 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=87.7
Q ss_pred CCCCCcchHHHHHHHHhccC----ChhHHHHHHHHHHHhCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHhcCCCCc
Q 007818 175 RVEPDEVTMIGMVSACAQLE----DLNLGREIHWYISESGLTLTV----PLANALMDMYVKCGKLESAEEIFDSMVNKTV 246 (588)
Q Consensus 175 ~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 246 (588)
|..++...++.++..+.+.. ..+.+..+-......++.++- .....-+..|-+.||+.+--.+|-.+...
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g-- 80 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG-- 80 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh--
Confidence 44555555555555544332 333333333333333333322 22233345566666666555444333211
Q ss_pred chHHHHHHHHHhcCCHH-----HHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 247 VSCTTMIVGYAKFGFLD-----IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 247 ~~~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 321 (588)
+-+.++++ -|+.+.++.+++-..||......-++.-..+++.+.+- ..+-.+++..
T Consensus 81 ---------ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~ 141 (233)
T PF14669_consen 81 ---------CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYS 141 (233)
T ss_pred ---------cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHH
Confidence 00111111 13444555555555667777776666555554433221 1122345566
Q ss_pred HcccCChhHHHHHHHHHHHhCC--------------CCcchHHHHHHHHhHhcCChhHHHHHhcc
Q 007818 322 CSQLGALDDGIWIHRFIEKENF--------------NLNVVLGTALVDMYAKCGNIAKALQVFHE 372 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (588)
|.+..++.++.+++..+.+..+ .+.-.+.|.....+.+.|..+.|..++++
T Consensus 142 Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 142 YHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 6777777777777777655422 22234455566666667777777666664
No 379
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.74 E-value=5.7 Score=34.36 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+.++.+.|.+.+.+++++-|+....|..++..-.++|+++.|.+.+++..+.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45556666666666666666666666666666666666666666666665544
No 380
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.85 E-value=42 Score=29.95 Aligned_cols=186 Identities=13% Similarity=0.020 Sum_probs=94.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
-++..+.+.|+++++...++++...+...+..--+.+..+|- ..|....+.+++.....+..-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 356677788999999999999988766666655554444442 234445556666655543211112 222223332221
Q ss_pred c------CChHHHHHHHHhCC----CCCCHhHHHHHHHH-H----Hhh-------CCHHHHHHHHHHHhc-----cCCCC
Q 007818 462 S------GLLEEAEQLIRSMP----MAADVVVWGALFFA-C----RLH-------GNVSIGERAAMKLLE-----LDPQD 514 (588)
Q Consensus 462 ~------g~~~~A~~~~~~~~----~~~~~~~~~~l~~~-~----~~~-------~~~~~A~~~~~~~~~-----~~p~~ 514 (588)
. .-..+...+++..- ..+....+-.-+.+ | +.. .-.+.|...|+++.+ +.|.|
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 11234555555431 11222222111111 1 111 123567777777754 55666
Q ss_pred CchHHH----HHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHH
Q 007818 515 SGIYVL----LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583 (588)
Q Consensus 515 ~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
|.-+.. -.-.|.-.|+.++|.++-+...+..++.... ..+.++++...+++.|.+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~--------------l~e~~~~d~~~ilqlLrd 223 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT--------------LSEESYKDSTLILQLLRD 223 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG--------------SHTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc--------------cchhhhHHHHHHHHHHHH
Confidence 654332 2234456899999999988887655432211 123346677777777654
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.73 E-value=1.5e+02 Score=33.08 Aligned_cols=93 Identities=12% Similarity=-0.055 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
++...-...+.++...|....+...+..+-..++...-...+.++...+. +++...+..+++ +| ++.+-...+.++.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHh
Confidence 34444445555555555543332223222233444444444444444433 234444444442 22 3334444444444
Q ss_pred ccCChHHHHHHHHHHH
Q 007818 527 DSNMWEEAGKVRKMME 542 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~ 542 (588)
+.+.-..+...+..+.
T Consensus 864 ~~~~~~~a~~~L~~al 879 (897)
T PRK13800 864 RWPGDPAARDALTTAL 879 (897)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4322334444444443
No 382
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.64 E-value=32 Score=25.47 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=41.1
Q ss_pred HHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007818 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417 (588)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 417 (588)
..+...|++++|..+.+....||...|.+|.. .+.|-.+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45667888888888888888788887766643 34566666666666676666 55555543
No 383
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.24 E-value=1.1e+02 Score=31.58 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHH-HHccCChhhHHHHHHHHHH-------hcCCCChhHHHHHHHHHHhCC--
Q 007818 59 MREAVDLYKQMLRNGGTRPDNFTYPLLFKV-CASLGLRFLGYEIFGHVLK-------LGFDVDMYVHNAVIHVFVSCG-- 128 (588)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 128 (588)
...|.+.++.......+.+-...=.....+ ....++++.|...++.+.+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456788887776622221111111111222 4567789999999999877 44 2334455566665532
Q ss_pred ---ChhHHHHHhccCCC-CCcccHHHHHHHHHh---CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh--ccCChhHH
Q 007818 129 ---DLGLACNVFDESCV-RNLVSWNSLINGFVR---SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA--QLEDLNLG 199 (588)
Q Consensus 129 ---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a 199 (588)
+...|..++...-. .++..--.+...+.. ..+...|.++|...-..|.. +..-+..++.... ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 55667777766322 222222222222222 23567888888888777642 2222222222222 34467778
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
..++....+.|.. ........+..+.. ++++.+.-.+..
T Consensus 384 ~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 384 FAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLY 422 (552)
T ss_pred HHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHH
Confidence 8888887777732 22222222333333 555555444433
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.25 E-value=7.9 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.009 Sum_probs=24.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+..++.++.+.|++++|+++.+.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 46778999999999999999999998753
No 385
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.17 E-value=65 Score=33.57 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT----------TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (588)
...++-.|....+++..+++.+.++.. ||..- |.-.++--.+.|+-++|+.+.-.+.+..-+..+..
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 444555666667777777777777663 33221 22222222345666666665544443321111111
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhccC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT---FLGILSACCHG 426 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~ 426 (588)
||-+|+ +|+.|- +.+.|...+..+.|.+.|++..+ +.|+..+ +..++.+..+
T Consensus 281 -------~Cl~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~- 335 (1226)
T KOG4279|consen 281 -------YCLCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE- 335 (1226)
T ss_pred -------eeeech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh-
Confidence 233332 122211 11234445566778888888776 4666553 3333332211
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
.++...++ .. +-..|-..+++.|..++..++|+-. ..+.+-.-.+++.+|++..+.
T Consensus 336 -~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 336 -HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred -hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHH
Confidence 12222211 11 1122344567888888888887543 233444567899999999999
Q ss_pred HhccCCCC
Q 007818 507 LLELDPQD 514 (588)
Q Consensus 507 ~~~~~p~~ 514 (588)
+.++.|+.
T Consensus 392 mfKLk~P~ 399 (1226)
T KOG4279|consen 392 MFKLKPPV 399 (1226)
T ss_pred HhccCCce
Confidence 99999863
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.90 E-value=76 Score=29.00 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHh
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (588)
++...+.|...|.+.+|.++.+..+..+ +.+...+..++..+...||--.+..-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556677777777777777776653 445556666677777777655555555444
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.61 E-value=64 Score=28.06 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhh-cCCCCChHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI-FRLSPKLKHYSCMVDL 458 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 458 (588)
+.+..++.+.+.+...+++...++-++.. +.|..+-..+++.++-.|+|++|..-++...+. ....+....|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455677788889999999888877763 334456667788899999999998877766532 0223335566666653
Q ss_pred HHhcCChHHHH-HHHHhC--C---CCCCHhHHHHHHHHHH-hh-CCHHHHHHHHHHHhccCCCC
Q 007818 459 LGRSGLLEEAE-QLIRSM--P---MAADVVVWGALFFACR-LH-GNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 459 ~~~~g~~~~A~-~~~~~~--~---~~~~~~~~~~l~~~~~-~~-~~~~~A~~~~~~~~~~~p~~ 514 (588)
+.++ ++|.-- + ..|.+.=...+..+.. .+ |..+.+...-+.+++..|..
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2222 334322 1 1133332333333332 23 34444555666677776653
No 388
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=15 Score=32.95 Aligned_cols=59 Identities=20% Similarity=0.109 Sum_probs=51.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.+-.++...++++.|..+.++.+.++|.+|.-+.--+-+|.+.|.+.-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34445778899999999999999999999988888999999999999999999987654
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.87 E-value=43 Score=30.28 Aligned_cols=83 Identities=7% Similarity=-0.089 Sum_probs=39.6
Q ss_pred HHHhHhcCChhHHHHHhc----cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-----
Q 007818 354 VDMYAKCGNIAKALQVFH----EMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC----- 424 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----- 424 (588)
|++++..+++.++....- .-.+-.+.....-|-.|.+.+.+..+.++-..-...--.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666654322 22222344444455556666666665555554433211112223444443333
Q ss_pred cCCchHHHHHHH
Q 007818 425 HGGLVDEGRKYF 436 (588)
Q Consensus 425 ~~~~~~~a~~~~ 436 (588)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666554
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.54 E-value=10 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=14.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 007818 384 IIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 391
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=37 Score=31.52 Aligned_cols=93 Identities=15% Similarity=0.038 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD--VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
..|.-=+.-|.+..++..|...|.+.. ..|| ...|..-..+-...|++..|+.-..+++..+|.+..++..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 334445566788889999999998762 2243 4456666666667899999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHHHHH
Q 007818 524 MYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~ 542 (588)
++....++++|....+...
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999888888777653
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.64 E-value=84 Score=28.55 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=35.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhccCCchHHHHHH
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEI-------TFLGILSACCHGGLVDEGRKY 435 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~ 435 (588)
+.+-..+.+++++|+..+.+....|+..+.. +...+...|...|++..-.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3445566788888888888888888776654 445566667777766554443
No 393
>PRK10941 hypothetical protein; Provisional
Probab=70.55 E-value=22 Score=32.42 Aligned_cols=66 Identities=11% Similarity=-0.042 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+.+-.+|.+.++++.|+.+.+.+ ...| ++.-+..-...|.+.|.+..|..-++..++..|++|.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34555677777888888777776 3444 455566666667778888888888888888888776553
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.48 E-value=11 Score=26.46 Aligned_cols=47 Identities=6% Similarity=0.045 Sum_probs=24.5
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
.....++|+..|+.+.++..-+|+ ..++..++.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666654222222 23444555566666666655544
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.22 E-value=40 Score=24.62 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=34.3
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChH
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 532 (588)
|......+...+...|+++.|+..+-++++.+|. +..+-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4556666777777888888888888888877765 4556667777777776643
No 396
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.59 E-value=89 Score=28.44 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=64.6
Q ss_pred HHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHcccCChh-HHHHHHHHHHH---hC--CCCcchHHHHHHHH
Q 007818 287 YVQAKRSKEALAL----FHEMQATGIKPDAVTTVHCLSACSQLGALD-DGIWIHRFIEK---EN--FNLNVVLGTALVDM 356 (588)
Q Consensus 287 ~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~~ 356 (588)
+.+.|+...|-++ ++-..+.+.++|......++..+...+.-+ .-.++.+.+.+ .+ ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4455554444333 333334456666665555555554333221 22233333322 22 12356778888889
Q ss_pred hHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
|.+.|++.+|+..|-.-..++...+..++......|...++ +.. ....+-.|.-.++...|...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlf-i~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLF-IARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHH-HHHHHHHHHHTTBHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHH-HHHHHHHHHHhcCHHHHHHHH
Confidence 99999999988877554433333332222222222222221 111 122223345567788888777
Q ss_pred HHhhhh
Q 007818 437 AQMSSI 442 (588)
Q Consensus 437 ~~~~~~ 442 (588)
....+.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.35 E-value=21 Score=30.69 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=16.5
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
..|++..|..++.++...|+.++|.++.+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 398
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.54 E-value=3.9 Score=39.56 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=69.0
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHH-HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCC
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH-YSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGN 496 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 496 (588)
+..+...++++.|..++.++.+. .|+... |..-..++.+.+++..|+.=...+ +..|. ...|..-..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 45566778889999999988864 565433 333346778888888887665554 44554 3345445566778888
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHH
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
+.+|...++....+.|+++.+...+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 8899999999999999877655443
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.45 E-value=1.6e+02 Score=30.96 Aligned_cols=192 Identities=9% Similarity=0.044 Sum_probs=108.5
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCc--ccHHHHHHHHH-ccCChhhHHHHHHHHHHhcCCCChh-
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN--FTYPLLFKVCA-SLGLRFLGYEIFGHVLKLGFDVDMY- 115 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~- 115 (588)
+.+...|..||.. |+.-++-+.+...++|.. .++..+...+. ...+++.|+..+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4455567776653 555666665434455543 34555566665 6789999999999876644332221
Q ss_pred ----HHHHHHHHHHhCCChhHHHHHhccCC----CCCc----ccHHHH-HHHHHhCCChhHHHHHHHHhHHCC---CCCC
Q 007818 116 ----VHNAVIHVFVSCGDLGLACNVFDESC----VRNL----VSWNSL-INGFVRSGFPREAIRLFRDMQLER---VEPD 179 (588)
Q Consensus 116 ----~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~p~ 179 (588)
....++..+.+.+... |...+++.. .... ..+.-+ +..+...+++..|.+.++.+...- ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234456666666555 887777621 1111 222222 222333479999999998886532 2333
Q ss_pred cchHHHHHHHHh--ccCChhHHHHHHHHHHHhCC---------CCChhhHHHHHHHH--HhcCChhHHHHHHHhc
Q 007818 180 EVTMIGMVSACA--QLEDLNLGREIHWYISESGL---------TLTVPLANALMDMY--VKCGKLESAEEIFDSM 241 (588)
Q Consensus 180 ~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 241 (588)
...+..++.+.. ..+..+.+.+.++.+..... .|...++..+++.+ ...|+++.+...++.+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555443 45556777777776644322 22345566665544 4567777777776665
No 400
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.03 E-value=1.6e+02 Score=30.89 Aligned_cols=86 Identities=9% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHhHhcCChhHHHHHhcc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcc---C
Q 007818 353 LVDMYAKCGNIAKALQVFHE--MPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCH---G 426 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~---~ 426 (588)
....+.-.|+++.|.+.+-+ ....+.+.+-+.+.-|.-.+-..... ..+.... -.|.+.-+..++..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 34556667888888888777 22223333333322221111111100 2222111 01222456666666654 5
Q ss_pred CchHHHHHHHHHhhh
Q 007818 427 GLVDEGRKYFAQMSS 441 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~ 441 (588)
.++.+|.+++--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 677888888877765
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.75 E-value=2.9e+02 Score=33.68 Aligned_cols=62 Identities=8% Similarity=-0.083 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
..+|...++.....|+++.|...+-.+...--+..+...+......|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34555555555556666666655443322222333444444455666666666666666643
No 402
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=66.82 E-value=13 Score=33.76 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHH-HHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFF-ACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
.+..|+..|...+....+.|.+.+.-.++.++ ...| ++..|..... -+...++++.+..++.+.++.+|++|.+|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 44556677776666666667777777777665 2334 4555544222 2567889999999999999999999999876
Q ss_pred HHH
Q 007818 521 LAN 523 (588)
Q Consensus 521 l~~ 523 (588)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.43 E-value=2.2e+02 Score=31.75 Aligned_cols=125 Identities=11% Similarity=-0.021 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHcccCChhH-HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHH-HHhccCCCCCcchHHHHHHH
Q 007818 310 PDAVTTVHCLSACSQLGALDD-GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL-QVFHEMPERNSLTYTAIIGG 387 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~~~ 387 (588)
++...-.....++...+..+. +...+..+.+ .++..+-.+.+.++...|..+.+. .+...+..++..+-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 444444445555554444322 2233333322 235555666677777777655442 23344444555555556666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
+...+. .++...+..+.+ .|+...-...+.++.+......+...+..+.+
T Consensus 831 L~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666654 345555555554 56666666666667665334456666666655
No 404
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.37 E-value=68 Score=25.90 Aligned_cols=76 Identities=11% Similarity=0.218 Sum_probs=42.8
Q ss_pred HHHHHHhHhcCChhHHHHHhccCC---------CCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMP---------ERNSLTYTAIIGGLALHGK-ALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
++++.-....+++.....+++.+. ..+...|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444445555444444432 1245566777776644443 334556666676666677777777777
Q ss_pred HHhccC
Q 007818 421 SACCHG 426 (588)
Q Consensus 421 ~~~~~~ 426 (588)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 766554
No 405
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.62 E-value=49 Score=25.15 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..-|..|+..|...|.+++|++++.++.+.
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 345888899999999999999999988763
No 406
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.29 E-value=81 Score=27.95 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhH
Q 007818 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483 (588)
Q Consensus 404 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 483 (588)
....+++|....+..-+..+-+ +++++|.+.+-.- .+.|+.... ++.++.+.|+...|..+++..+-......
T Consensus 70 a~~f~ip~~~~~~~~g~W~LD~-~~~~~A~~~L~~p----s~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~~ 142 (226)
T PF13934_consen 70 ARAFGIPPKYIKFIQGFWLLDH-GDFEEALELLSHP----SLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSPE 142 (226)
T ss_pred HHHhCCCHHHHHHHHHHHHhCh-HhHHHHHHHhCCC----CCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCHH
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH----ccCChHHHHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR----DSNMWEEAGKV 537 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~ 537 (588)
-..+.......+.+.+|....+..-+ +.....+..+...+. +.|..++-..+
T Consensus 143 ~~~~~~~~La~~~v~EAf~~~R~~~~--~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 143 ALTLYFVALANGLVTEAFSFQRSYPD--ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCch--hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.58 E-value=29 Score=27.91 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
+.|.++.+-|. ...............|++.-|.++...++..+|+|..+-...+.+|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 233344445556688999999999999999999999988888888876654
No 408
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.90 E-value=1.6e+02 Score=29.14 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=51.4
Q ss_pred hcCChHHHHHHHHhCC-CCCCHh----HHHHHHHHHHhh-CCHH------HHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 461 RSGLLEEAEQLIRSMP-MAADVV----VWGALFFACRLH-GNVS------IGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~-~~~~~~----~~~~l~~~~~~~-~~~~------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
..|+.++|+.++-.++ .+||.. -|..++..+... ++.. +-..+.++++-.+..+..++-..+.-....
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred ccccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 3478888888876663 567754 234444443321 1111 112233444445555555555555555677
Q ss_pred CChHHHHHHHHHHHhcCCccC
Q 007818 529 NMWEEAGKVRKMMEERGVEKT 549 (588)
Q Consensus 529 g~~~~A~~~~~~~~~~~~~~~ 549 (588)
.++.+|+++|+++.+-+-+..
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~ 810 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTE 810 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCc
Confidence 899999999999976544433
No 409
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=63.89 E-value=1.5e+02 Score=29.10 Aligned_cols=119 Identities=6% Similarity=-0.165 Sum_probs=50.3
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 007818 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213 (588)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (588)
..+++.+..++........+++...+.......+ ..+.+ .++...-...+.++...+. + +...+..+.+ .+
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L-~~~L~---~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~ 159 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL-EPLLA---ASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HE 159 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH-HHHhc---CCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CC
Confidence 3333444444444555555555555554433333 22322 1222333333444443321 1 1222222222 34
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGF 261 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 261 (588)
+..+...-+.++...+..+..-.+..-....|..+-..-+.+....|.
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 555555555555555554333333333334455555555555555554
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.13 E-value=84 Score=28.56 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH-----
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA----- 358 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 358 (588)
|.+++..+++.+++...-+--+..-+.........|-.|.+.+.+..+.++-..-....-+-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566777777777766554443321112223344445555666666666655544444322333333555555443
Q ss_pred hcCChhHHHHHh
Q 007818 359 KCGNIAKALQVF 370 (588)
Q Consensus 359 ~~~~~~~A~~~~ 370 (588)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 411
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.39 E-value=46 Score=27.00 Aligned_cols=63 Identities=6% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 007818 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 167 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 230 (588)
+.+.+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 44555667776665433 5666777777778888888888888777777766666677766664
No 412
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.29 E-value=1.3e+02 Score=27.89 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCCCCCch
Q 007818 499 IGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~ 517 (588)
.|.+.+.++++.+|.-|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 4677888888888865544
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.29 E-value=1.7e+02 Score=28.92 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=7.6
Q ss_pred CCChhhHHhhccc
Q 007818 25 SKNLDYCTKILFN 37 (588)
Q Consensus 25 ~g~~~~a~~~~~~ 37 (588)
.|+.+-+..+++.
T Consensus 12 ~g~~~iv~~Ll~~ 24 (413)
T PHA02875 12 FGELDIARRLLDI 24 (413)
T ss_pred hCCHHHHHHHHHC
Confidence 5666666555554
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.04 E-value=56 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQA 305 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 305 (588)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88888999999999999999988877
No 415
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.75 E-value=2.6e+02 Score=31.01 Aligned_cols=354 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChh
Q 007818 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232 (588)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 232 (588)
+++...+.+++|+..|++.... .+.....|....++ ...+++++.+.|-+ ..++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----------------~~~~ 536 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRL---------GITLLEKASEQGDP----------------RDFT 536 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHh---------hHHHHHHHHhcCCh----------------HHHH
Q ss_pred HHHHHHHhcCCCCcchHHHHHHH--HHhcCCHHHHHHHhhhCCCCCccc---------------------------HHHH
Q 007818 233 SAEEIFDSMVNKTVVSCTTMIVG--YAKFGFLDIARKIFDDLPEKYVVP---------------------------WNAI 283 (588)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~l 283 (588)
+|+.-|+.+.........-+..+ |-+.|++++-.+.+.-..+.-+.. |..+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (932)
T PRK13184 537 QALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLL 616 (932)
T ss_pred HHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHH--------HHHHHhCCCCcchHHHHHHH
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH--------RFIEKENFNLNVVLGTALVD 355 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~l~~ 355 (588)
+-..+-..-...-.+-|-+.......|......-..-.-.+...++.-+.++ +...+....++......+..
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (932)
T PRK13184 617 ALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFY 696 (932)
T ss_pred HHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHH
Q ss_pred HhHhcCChhHHHHHhccCC---CCCcchHHHH-------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 356 MYAKCGNIAKALQVFHEMP---ERNSLTYTAI-------------IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
+.+..|.++-+.+....+. ..-..+-+.+ +.++.....++++.+.+.......+ ...+..+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 773 (932)
T PRK13184 697 VACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLF 773 (932)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHHHHH
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHhCCCC--CCHhHHHHHHHHH--H
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLK---HYSCMVDLLGRSGLLEEAEQLIRSMPMA--ADVVVWGALFFAC--R 492 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~--~ 492 (588)
+.-+...++.+....+.+.+.+ ...+... .....+.+|.-..++++|-++++..+.+ .+..+...++.+| +
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (932)
T PRK13184 774 AIQALLDEEGESIIQLLQLIYD--YVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLA 851 (932)
T ss_pred HHHHHHhccchHHHHHHHHHHh--ccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHH
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
-.++-+.|...+.... .+-+..-...+..+.-.|+.++....+++
T Consensus 852 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 852 LTEDREAAKAHFSGCR---EDALFPRSLDGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred hcCchhHHHHHHhhcc---ccccCcchhhccccchhccccccccHHHH
No 416
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.69 E-value=14 Score=32.13 Aligned_cols=56 Identities=30% Similarity=0.316 Sum_probs=36.0
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 459 LGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
..+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.+++.++++|.|
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666666666655 2333 45566666666667777777777777777777765
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.65 E-value=18 Score=36.21 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=71.2
Q ss_pred HhcCChHHHHHHHHhCC-CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 460 GRSGLLEEAEQLIRSMP-MAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
...|+...|...+..+- .+| .......+.....+.|-.-.|-..+.+.+.+.-..|-.+..++++|.-..+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 45789999999988763 334 334556677777778888889999999999988788899999999999999999999
Q ss_pred HHHHHHhcCC
Q 007818 537 VRKMMEERGV 546 (588)
Q Consensus 537 ~~~~~~~~~~ 546 (588)
.|+.+.+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 9999987643
No 418
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=61.03 E-value=2.5e+02 Score=30.60 Aligned_cols=69 Identities=12% Similarity=-0.041 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh
Q 007818 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 397 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (588)
-.+.|.++.+---.-|..++..-..-+...|++..|.+++.++.+..+-.++...|..++..+...|.-
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 334444444321123444444444555566777788888777777656677777777777766666644
No 419
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.95 E-value=32 Score=19.89 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=9.1
Q ss_pred HHHHHHHHccCChHHHHHH
Q 007818 519 VLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~ 537 (588)
..++-.+...|++++|+++
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445555555555555
No 420
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.84 E-value=77 Score=23.94 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (588)
+.+.+.+...+..+++..+++-+ .+..+|+|++| -.....-..|..-..++-+-.+.|..+
T Consensus 26 ~tIa~wL~~~~~~~E~v~lIr~~--------------sLmNrG~Yq~A-----Ll~~~~~~~pdL~p~~AL~a~klGL~~ 86 (116)
T PF09477_consen 26 NTIADWLEQEGEMEEVVALIRLS--------------SLMNRGDYQEA-----LLLPQCHCYPDLEPWAALCAWKLGLAS 86 (116)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH--------------HHHHTT-HHHH-----HHHHTTS--GGGHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH--------------HHHhhHHHHHH-----HHhcccCCCccHHHHHHHHHHhhccHH
Q ss_pred HHHHHHHHHHhcCCc
Q 007818 533 EAGKVRKMMEERGVE 547 (588)
Q Consensus 533 ~A~~~~~~~~~~~~~ 547 (588)
++...+.++...|.+
T Consensus 87 ~~e~~l~rla~~g~~ 101 (116)
T PF09477_consen 87 ALESRLTRLASSGSP 101 (116)
T ss_dssp HHHHHHHHHCT-SSH
T ss_pred HHHHHHHHHHhCCCH
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.44 E-value=34 Score=29.36 Aligned_cols=54 Identities=17% Similarity=-0.013 Sum_probs=33.7
Q ss_pred hCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHh
Q 007818 55 ETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL 108 (588)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (588)
..++.+......+.+.+.....|+...|..++.++...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444444443332335677777777777777777777777777777663
No 422
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=58.40 E-value=1.9e+02 Score=28.44 Aligned_cols=182 Identities=7% Similarity=-0.098 Sum_probs=105.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 007818 49 AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128 (588)
Q Consensus 49 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (588)
-|+++...| ..+.+.+-.... -.++...+.....++....+...+..+++.+. .++..+......++...+
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~---~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALA---EADEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHh---hCCChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCC
Confidence 378888888 567777766664 12444444444444443333332334444332 356668888899998888
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
+......+..-+..++.......+.++...+. + +.+.+....+ .+|...-...+.++...+..+..-. +..+.
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~-L~~al- 187 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSEST-LRLYL- 187 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHH-HHHHH-
Confidence 87766666666666666666566666665442 2 3334444433 4555555666777777666543333 22332
Q ss_pred hCCCCChhhHHHHHHHHHhcCChhHHHHHHHh-cCCCCcchH
Q 007818 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDS-MVNKTVVSC 249 (588)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~ 249 (588)
..++..+-..-+.+....|. +.|...+.. ...++....
T Consensus 188 --~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~ 226 (410)
T TIGR02270 188 --RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHR 226 (410)
T ss_pred --cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHH
Confidence 23577777788888888888 566655554 344444433
No 423
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.93 E-value=61 Score=25.25 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=35.4
Q ss_pred CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..-|++......+++|.+.+|+..|.++++-....-++....|-.+.
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45688888999999999999999999998887655554444555544
No 424
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=57.45 E-value=40 Score=30.84 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=29.8
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 460 GRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
.+.|+.++|..+|+-+ ...|+ +..+..+......+++.-+|-++|-+++...|.|..++.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3455666666666533 33332 2233333333333455556666666666666655544443
No 425
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.07 E-value=31 Score=24.24 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=34.9
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHH---HHHHHHHccCChHHHHHH
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYV---LLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 537 (588)
..++.++|+..++++++..++.+.-+. .|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999988876655544 456677888888888776
No 426
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.05 E-value=2e+02 Score=28.19 Aligned_cols=356 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCC---
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSG--- 159 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--- 159 (588)
+..+.-|...|+..+|.+..+++.. .+-.+..+-.+++.+....-.-...+.++.+....+..+-..+.+++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHH
Q 007818 160 -----FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234 (588)
Q Consensus 160 -----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 234 (588)
+...|...|+....+.+.-+...-+.+-..-...|+.+. ...|+.-... +|+-|...|+..+.
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~-----------IIqEYFlsgDt~Ev 364 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP-----------IIQEYFLSGDTPEV 364 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH-----------HHHHHHhcCChHHH
Q ss_pred HHHHHhcCCC--CcchHHHHHHHHHhcCCHHH--HHHHhhhCCCCCccc------HHHHHHHHHh-cCChHHHHHHHHHH
Q 007818 235 EEIFDSMVNK--TVVSCTTMIVGYAKFGFLDI--ARKIFDDLPEKYVVP------WNAIIGGYVQ-AKRSKEALALFHEM 303 (588)
Q Consensus 235 ~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~------~~~l~~~~~~-~~~~~~a~~~~~~~ 303 (588)
.+.++.+.-+ ++.....+|........-++ |-.++..+.-.-..| |..|+...-. .=+.-.|-+.+...
T Consensus 365 i~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalF 444 (645)
T KOG0403|consen 365 IRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALF 444 (645)
T ss_pred HHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh---------------------CCCCcchHHHHHHHHhHhcCC
Q 007818 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE---------------------NFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 304 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~ 362 (588)
..+-+--+.-.-..+=....+..-...+.+.++..... .++.-..-...|+.-|...|+
T Consensus 445 lARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~Gd 524 (645)
T KOG0403|consen 445 LARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGD 524 (645)
T ss_pred HHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccc
Q ss_pred hhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHh
Q 007818 363 IAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439 (588)
Q Consensus 363 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (588)
..+|.+.++++--| ....+.+++.+..+.|+....+.+++...+.| ++....-..-+++...-+..+
T Consensus 525 isEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----------lIT~nQMtkGf~RV~dsl~Dl 594 (645)
T KOG0403|consen 525 ISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----------LITTNQMTKGFERVYDSLPDL 594 (645)
T ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----------ceeHHHhhhhhhhhhccCccc
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcC
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSG 463 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g 463 (588)
.- .++....-++..+.-+...|
T Consensus 595 sL--DvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 595 SL--DVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred cc--CCCcHHHHHHHHHHHHHHcC
No 427
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.62 E-value=1.5e+02 Score=26.45 Aligned_cols=117 Identities=9% Similarity=-0.068 Sum_probs=61.2
Q ss_pred hHhcCChhHHHHHhccCC--CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhccCCchHHH
Q 007818 357 YAKCGNIAKALQVFHEMP--ERNS-LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL-GILSACCHGGLVDEG 432 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a 432 (588)
|....+++.|...|.+.. .|+. .-|+.-+..+.+.++++.+..--...++ +.||..--. .+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444456667776665554 3443 3455566666777777777666666655 456655332 233445555667777
Q ss_pred HHHHHHhhhh---cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 433 RKYFAQMSSI---FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 433 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
+..+.+.... ..+++.......|..+-...=...+...+.+..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7776666322 133334444444444322222333344444433
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.89 E-value=47 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
..+.......|+.++|...+++++++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334445667788888888888887654
No 429
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.02 E-value=1.6e+02 Score=26.13 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=18.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCC
Q 007818 388 LALHGKALDAISYFSEMIGVGL 409 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~ 409 (588)
+...|+++.|+++.+.++++|.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC
Confidence 4567899999999999888874
No 430
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.89 E-value=1.4e+02 Score=27.56 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC
Q 007818 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES 140 (588)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 140 (588)
++++.+.+.++.|.-+.+.-+.-.+.+.=.+.+.+.+|+.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 45555555555555555555555555555556666666554
No 431
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.57 E-value=99 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.+.+.+.+...+.|+.+..+..|+.-+...--|+++.+--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467788888899998766666666655555555555544443
No 432
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=53.46 E-value=2e+02 Score=27.19 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=65.4
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS-YFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
-+.+.+++.++-+.+..+-+.+..-......++..++....=.+...+ +++.+... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 345566666666555555555554444455555555554443333333 33333332 77777777777777766555
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHH-HHHhcCChHHHHHHHHhCCCCCCHhHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVD-LLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 487 (588)
.....+..+... ....+......+.. ......+.+.+..+++++...++...++.+
T Consensus 248 ~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~ql 304 (340)
T PF12069_consen 248 LVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQL 304 (340)
T ss_pred HHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHH
Confidence 555545555553 22233333332222 222233445555555555444433333333
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.03 E-value=94 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=10.6
Q ss_pred HHhcCChHHHHHHHHhCCCCCC
Q 007818 459 LGRSGLLEEAEQLIRSMPMAAD 480 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~ 480 (588)
|.+.|.+++|.+++++.-.+|+
T Consensus 121 Cm~~g~Fk~A~eiLkr~~~d~~ 142 (200)
T cd00280 121 CMENGEFKKAEEVLKRLFSDPE 142 (200)
T ss_pred HHhcCchHHHHHHHHHHhcCCC
Confidence 4455555555555555433333
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=52.43 E-value=35 Score=24.49 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=16.2
Q ss_pred CChhHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007818 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFG 260 (588)
Q Consensus 229 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 260 (588)
.+.+++.++++.+..+++..|..+..++...|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34455555555555555555555555444443
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.41 E-value=3.5e+02 Score=29.64 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQAT 306 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 306 (588)
|..|+..|...|..++|++++.+....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 888999999999999999999988763
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.07 E-value=49 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 007818 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122 (588)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (588)
...+.|-+.++...++.|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 33466677777788888877777777777666654
No 437
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.62 E-value=2.4e+02 Score=27.39 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHH
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
|..|.. -.+.|+.++-.+++++.
T Consensus 321 Yf~Lt~-AVr~gdlkkF~~~leq~ 343 (493)
T KOG2581|consen 321 YFKLTQ-AVRLGDLKKFNETLEQF 343 (493)
T ss_pred HHHHHH-HHHHhhHHHHHHHHHHH
Confidence 444433 24566666555555544
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.61 E-value=32 Score=33.34 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC----------CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMPMAA----------DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
.-.|++.++-.|++..|+++++.+.... ...++-.++.+|...+++..|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777788888888887764221 22233444444555555555555555443
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.21 E-value=1.1e+02 Score=24.12 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=30.8
Q ss_pred HHHHHHHHHhc--cCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 499 IGERAAMKLLE--LDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 499 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.+..+|..+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777765 3445666788888888888888888888875
No 440
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.80 E-value=2.7e+02 Score=27.47 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChh--HHHHHHHHHHhCC
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRPDNFT--YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY--VHNAVIHVFVSCG 128 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 128 (588)
.++.|+.+-+..++ + .|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 9 A~~~g~~~iv~~Ll----~-~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDIARRLL----D-IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34455654444333 3 455554322 233445555666654 334444555444321 1122344445667
Q ss_pred ChhHHHHHhccC
Q 007818 129 DLGLACNVFDES 140 (588)
Q Consensus 129 ~~~~A~~~~~~~ 140 (588)
+.+.+..+++..
T Consensus 80 ~~~~v~~Ll~~~ 91 (413)
T PHA02875 80 DVKAVEELLDLG 91 (413)
T ss_pred CHHHHHHHHHcC
Confidence 776666666553
No 441
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.26 E-value=2.3e+02 Score=26.64 Aligned_cols=82 Identities=18% Similarity=-0.051 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhhhhcCC---CCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRL---SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
.+.|.+.|+.......- ..++.....+.....+.|+.+.-..+++.....++...-..++.+.....+.+...+++.
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45677777777763111 345555566666777777766666666666555677777778888777888887788888
Q ss_pred HHhcc
Q 007818 506 KLLEL 510 (588)
Q Consensus 506 ~~~~~ 510 (588)
.++.-
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 88774
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.60 E-value=27 Score=31.95 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH
Q 007818 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183 (588)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 183 (588)
|+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 567777777777777777777777777765444444
No 443
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.83 E-value=48 Score=18.60 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 496 NVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.++.|..+|++.+...| ++..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46777888888877776 4666655543
No 444
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.48 E-value=1.8e+02 Score=24.63 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
..+..|.+.|.+++|.+++++..+ +|++...-.-|...-.+.+.+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 345568899999999999999988 776655533344333333333
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.20 E-value=29 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=25.1
Q ss_pred HhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
...|.-..|..+|+.|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999998885 56666543
No 446
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=46.11 E-value=1.4e+02 Score=23.18 Aligned_cols=58 Identities=22% Similarity=0.075 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHh-------ccCCCCCchH----HHHHHHHHccCChHHHHHHHHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLL-------ELDPQDSGIY----VLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
+..+..++...|++++++....+++ +++.+....| .+-+.++...|+.++|+..|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3334444455555554444433333 3444333333 34456777889999998888765
No 447
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.94 E-value=2.7e+02 Score=26.39 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh---cCChHHHHHH
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR---SGLLEEAEQL 471 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 471 (588)
+.-+.++++.++++ +-+......++..+.+..+.++..+-|+++... .+-+...|...++.... .-.+.+...+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45566777776663 344455666677777777777777777877763 33356667666665433 2234555555
Q ss_pred HHhC-------CCC--------C--CHh---HHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 472 IRSM-------PMA--------A--DVV---VWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 472 ~~~~-------~~~--------~--~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
|.+. ... + +.. .+..+...+...|-.+.|..+++-+++.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5433 110 1 111 22233333568899999999999999876
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.89 E-value=27 Score=34.13 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHH
Q 007818 456 VDLLGRSGLLEEAEQLIRSM-PMAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (588)
+.-+...+.++.|..++.++ ..+|+-. .+..-..++.+.+++..|+.=+.++++.+|.....|..-+.++...+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 45566788999999999876 4667544 344444678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 007818 534 AGKVRKMMEER 544 (588)
Q Consensus 534 A~~~~~~~~~~ 544 (588)
|+..|+.....
T Consensus 91 A~~~l~~~~~l 101 (476)
T KOG0376|consen 91 ALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHhhhc
Confidence 99999988664
No 449
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.70 E-value=55 Score=19.23 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=22.7
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+|..|+.+-...++|++|.+-|+...+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888999998888887754
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.38 E-value=42 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=19.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
...++..|...|++++|.++++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45577788888889888888888754
No 451
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.74 E-value=3.2e+02 Score=27.00 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHH---CCC-CCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHH
Q 007818 294 KEALALFHEMQA---TGI-KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369 (588)
Q Consensus 294 ~~a~~~~~~~~~---~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 369 (588)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+. +...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHH
Confidence 344444444332 133 44555555555443 67888887777766543211111 112222
Q ss_pred hccC---CCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 370 FHEM---PERNSLTYTAIIGGLAL---HGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 370 ~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
+... ..++.....-+++++.+ .++++.|+.++..|.+.|..|....-..+..++.
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2211 11222233444555444 4788889999999998887776554444444433
No 452
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.76 E-value=4.8e+02 Score=28.39 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=12.4
Q ss_pred ChhhHHHHHHHHHHhcC
Q 007818 94 LRFLGYEIFGHVLKLGF 110 (588)
Q Consensus 94 ~~~~a~~~~~~~~~~~~ 110 (588)
..+....+++++...|+
T Consensus 296 g~~ng~amLe~L~~~gL 312 (894)
T COG2909 296 GEENGQAMLEELERRGL 312 (894)
T ss_pred cCCcHHHHHHHHHhCCC
Confidence 34557778888888884
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.69 E-value=83 Score=19.60 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=21.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 421 (588)
.+.|-.+++..++++|.+.|+.-++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666677777777777777666666665554
No 454
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.54 E-value=94 Score=30.45 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..++...+..+.+.+++..|..+.++++++.|... .-++|.+++....+.
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e~~ 349 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSPE--------------VAEQARKILQACERN 349 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 44677777888899999999999999999998532 123567777765543
No 455
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.16 E-value=1.9e+02 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHhCCC-hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 007818 144 NLVSWNSLINGFVRSGF-PREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 193 (588)
+...|++++.+..+... --.+..+|+.|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777755444 334667777777777777777777777777664
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.04 E-value=49 Score=30.39 Aligned_cols=44 Identities=11% Similarity=-0.002 Sum_probs=32.1
Q ss_pred CCCCcc-cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 75 TRPDNF-TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 75 ~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
+.||.. .|+.-|....+.||+++|.++++++++.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345544 36688888888899999999999998888755444443
No 457
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.98 E-value=44 Score=30.57 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=39.3
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA 479 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 479 (588)
..+.|..++|..+|+.+... -+.++.....+........+.-+|-+++-++ ...|
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 45789999999999999863 2334666666666666667778888877655 4555
No 458
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.97 E-value=1.5e+02 Score=26.42 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
+..+..++...|++-++++.-.++ ...| +...+-.-..+.+..=+..+|..-+.++++++|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 344455666777777777776665 2233 4556655566666666788888899999998885
No 459
>PHA03100 ankyrin repeat protein; Provisional
Probab=41.75 E-value=3.8e+02 Score=27.01 Aligned_cols=227 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred CcccccCcCCchhhH--HHHh-----hcccCCCChhhHHhhcccCCCCChhhH--HHHHHHHH--hCCChHHHHHHHHHH
Q 007818 1 MTITGLISHGFAPSR--LIAF-----CAISESKNLDYCTKILFNVQNPNSFSW--NVAIRGFL--ETGKMREAVDLYKQM 69 (588)
Q Consensus 1 ~~~~g~~~~~~~~~~--ll~~-----~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~l~~~~~--~~~~~~~a~~~~~~~ 69 (588)
+++.|..|+....+. .+.. .. ..|+.+-+.-+++.-..++.... .+.+...+ ..|+.+-...+++.-
T Consensus 54 Ll~~g~~~~~~~~~~~t~L~~~~~~~a~--~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g 131 (480)
T PHA03100 54 LLDNGADINSSTKNNSTPLHYLSNIKYN--LTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131 (480)
T ss_pred HHHcCCCCCCccccCcCHHHHHHHHHHH--hhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC
Q ss_pred HhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHH--HHHHHHHHhCCChhHHHHHhccCCCCCccc
Q 007818 70 LRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVH--NAVIHVFVSCGDLGLACNVFDESCVRNLVS 147 (588)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 147 (588)
.. +......-.+.+..++..|. .-.++++.+.+.|..++.... ..-+...+..|+.+-+.-+++....++...
T Consensus 132 ~~---~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 206 (480)
T PHA03100 132 AN---VNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD 206 (480)
T ss_pred CC---CCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Q ss_pred H--------HHHHHHHHhCCC--hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhh
Q 007818 148 W--------NSLINGFVRSGF--PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL 217 (588)
Q Consensus 148 ~--------~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 217 (588)
. .+.+...+..|+ .+-+.-+++.-..-+ .+|..-.+.+..++.... .++++.+.+.|..++...
T Consensus 207 ~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din-~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 207 IETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN-IKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCccC
Q ss_pred HH--HHHHHHHhcCChhHHHHHHHh
Q 007818 218 AN--ALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 218 ~~--~l~~~~~~~g~~~~A~~~~~~ 240 (588)
.. .-+......++.+-+..+++.
T Consensus 281 ~~g~tpl~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 281 KYGDTPLHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhc
No 460
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.52 E-value=33 Score=31.98 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc-cHHHHHHHHHccCChhhHH
Q 007818 24 ESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCASLGLRFLGY 99 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 99 (588)
..|.++.|+..|.... ++....|.--.+++.+.++...|+.=+..... +.||.. .|..--.+....|+++++.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHHHH
Confidence 3788888888888754 44555566667888888889888888887766 666643 3444444555678899999
Q ss_pred HHHHHHHHhcCCCChh
Q 007818 100 EIFGHVLKLGFDVDMY 115 (588)
Q Consensus 100 ~~~~~~~~~~~~~~~~ 115 (588)
..+....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 9998888877655443
No 461
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=41.40 E-value=1.2e+02 Score=21.53 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=5.2
Q ss_pred hCCChhHHHHHhc
Q 007818 126 SCGDLGLACNVFD 138 (588)
Q Consensus 126 ~~~~~~~A~~~~~ 138 (588)
..|+.+-+..+++
T Consensus 35 ~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 35 ENGNLEIVKLLLE 47 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344443333333
No 462
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.38 E-value=2.6e+02 Score=25.96 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh----------cCChhHH
Q 007818 297 LALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK----------CGNIAKA 366 (588)
Q Consensus 297 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A 366 (588)
.++++.+...++.|.-..+.-+.-.+.+.=.+..++.+|+.+.... .-+..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4667777777788877777766666667677777777777766432 224445544442 3555555
Q ss_pred HHHhccCCCCC
Q 007818 367 LQVFHEMPERN 377 (588)
Q Consensus 367 ~~~~~~~~~~~ 377 (588)
.++++.-+.-|
T Consensus 338 mkLLQ~yp~td 348 (370)
T KOG4567|consen 338 MKLLQNYPTTD 348 (370)
T ss_pred HHHHhcCCCCC
Confidence 55555444333
No 463
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=40.91 E-value=3.4e+02 Score=26.20 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC--------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC-------ch
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMPMAA--------DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS-------GI 517 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~ 517 (588)
..|...+-.+|+.++|..++.+.+.+. -......-++-|...+|+-.|--+.+++....-+++ ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 356677888999999999998885331 122233445667888999999888888765432222 24
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHH
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
|+.++....+.+.|=++-+.++.+-..|.-+...--|..+-..+.-|+... |..-+..+.+.+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LA---p~dneQsdll~~ 277 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLA---PHDNEQSDLLAR 277 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeec---CCCcHHHHHHHH
Confidence 777888888999999999999988776554442223443333332344433 333344444444
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.45 E-value=2.3e+02 Score=30.64 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
+..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-.++.+-+
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 334555555555555555555555554432 233333444555555555554444
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.22 E-value=1.2e+02 Score=24.63 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
..++..+...+++-.|.++++++.+.+...+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555555666667777666655555555444444444433
No 466
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=40.21 E-value=97 Score=30.00 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCHH---HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 483 VWGALFFACRLHGNVS---IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
+...++..+...++.. +|..+++.++...|.|...-..++.+|...|-.+.|.+.|+.+
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.02 E-value=62 Score=34.43 Aligned_cols=44 Identities=27% Similarity=0.279 Sum_probs=21.9
Q ss_pred hcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007818 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (588)
.+|+.+.|++.-..+ .+...|..|......+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 445555555544443 24445555555555555555555555443
No 468
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.93 E-value=1.7e+02 Score=28.22 Aligned_cols=87 Identities=16% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc----------CCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-----MAADVVVWGALFFACRLHGNVSIGERAAMKLLEL----------DPQD 514 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~ 514 (588)
..+.-+.+.|..+|+++.|.+.+.+.+ .+.....|..++..-...|++........++... -|..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred CchHHHHHHHHHccCChHHHHHHH
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
..++..|+....+ +++.|.+.|
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHH
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.80 E-value=97 Score=27.93 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=10.7
Q ss_pred HHHHhccCCchHHHHHHHHHhh
Q 007818 419 ILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
+..-|.+.|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445555555555555543
No 470
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.56 E-value=1.8e+02 Score=23.64 Aligned_cols=61 Identities=3% Similarity=0.096 Sum_probs=39.2
Q ss_pred HhHHCCCCCCcchHHHHHHHHhcc-CChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQL-EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556666554433 344444443 45778888888888887777777766677777776654
No 471
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.31 E-value=42 Score=22.33 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=13.5
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHH
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLK 107 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (588)
-.++.++...|++++|.++++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555666666666665555544
No 472
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=4.5e+02 Score=26.99 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=72.5
Q ss_pred CChhhHHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhCCChhHHHHHhcc-------CCCC-----------
Q 007818 93 GLRFLGYEIFGHVLKLGF-----------DVDMYVHNAVIHVFVSCGDLGLACNVFDE-------SCVR----------- 143 (588)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~----------- 143 (588)
..++++...|.......- |-.+.+...+..++..+|+.+.|..++++ ...|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 346677777776665421 11233444555677778887776666554 1111
Q ss_pred ------CcccHHHH---HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh-ccCChhHHHHHHHHHHHh---C
Q 007818 144 ------NLVSWNSL---INGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA-QLEDLNLGREIHWYISES---G 210 (588)
Q Consensus 144 ------~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~---~ 210 (588)
|-..|-++ +..+.+.|.+..|++.-+-+.+....-|+.....+|..|+ +..++.=.+++++..... .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 22223222 3445566777777777666666543334555555566554 344555555555444322 2
Q ss_pred CCCChhhHHHHHHHHHhcCC
Q 007818 211 LTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~g~ 230 (588)
.-|+...-.+++..|.+...
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred hcCCchHHHHHHHHHHhcCC
Confidence 33454444555555555444
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.67 E-value=5.1e+02 Score=27.58 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc----------chHHHHHHHHhccCChhHHHHHHHHHHHhC--CCCCh
Q 007818 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDE----------VTMIGMVSACAQLEDLNLGREIHWYISESG--LTLTV 215 (588)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 215 (588)
...++-.|....+++..+++.+.++. .||. ..|...++---+-|+.++|+.+.-.+++.. +.||.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 34445555556666666666666654 2221 122222222334456666666655555542 23333
Q ss_pred hhHH-------HHHHHHHhcCChhHHHHHHHhc
Q 007818 216 PLAN-------ALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 216 ~~~~-------~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
.... .+...|...+..+.|.+.|++.
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka 313 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA 313 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHH
Confidence 2211 1112233344556666666665
No 474
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.56 E-value=3.9e+02 Score=26.11 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=40.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHHH--ccCChhhHHHHHHHHHHh
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNF--TYPLLFKVCA--SLGLRFLGYEIFGHVLKL 108 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 108 (588)
+..+...+++..|.++|+.+.. . ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456688899999999999988 3 555544 4455555554 556788899988887775
No 475
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.38 E-value=1.5e+02 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=17.6
Q ss_pred cCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCC
Q 007818 259 FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKR 292 (588)
Q Consensus 259 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 292 (588)
..+.+++.++++.++..++..|..+..++...|.
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3344555555555555555555555555544443
No 476
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.33 E-value=73 Score=29.34 Aligned_cols=70 Identities=9% Similarity=-0.024 Sum_probs=56.2
Q ss_pred CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH-HHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL-LANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.|+..|...+.-..+.|.+.+...++.+++...|.|...|.. -..-+...++++.++.+|.+-.+.+.+.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 466777777666667788999999999999999999888876 5556778899999999999877665443
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.63 E-value=1.2e+02 Score=27.32 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
..++..|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 35666777777777777777766
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.12 E-value=3.8e+02 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=18.1
Q ss_pred HHHHHHhHhcCChhHHHHHhccCC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356667888888888888887776
No 479
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.00 E-value=1e+02 Score=22.48 Aligned_cols=27 Identities=0% Similarity=0.080 Sum_probs=12.9
Q ss_pred ChhHHHHHHHhcCCCCcchHHHHHHHH
Q 007818 230 KLESAEEIFDSMVNKTVVSCTTMIVGY 256 (588)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~ll~~~ 256 (588)
..+++.++++.+..+++..|..+..++
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 344444555544444444444444444
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.95 E-value=2.1e+02 Score=23.98 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=38.8
Q ss_pred hHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 171 MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 171 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+++.|+.++..-. .++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4455666555433 44455555566677888888888877777776666667777776654
No 481
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.33 E-value=1.4e+02 Score=24.91 Aligned_cols=49 Identities=6% Similarity=-0.099 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh
Q 007818 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
-..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445555555566667788888887777666777666666666655543
No 482
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=4.1e+02 Score=25.74 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHhHhcCChhHHHHHhccCC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
..|...+-..|+.++|..++.+.+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~ 158 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ 158 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc
Confidence 456777888999999999987765
No 483
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.30 E-value=3.9e+02 Score=25.27 Aligned_cols=116 Identities=9% Similarity=-0.030 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHhHHHHHHHHHHh---hCCHHHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-AA-DVVVWGALFFACRL---HGNVSIGERA 503 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~---~~~~~~A~~~ 503 (588)
.+.-+.+++++.+. .+.+......++..+.+..+.++..+.++++.. .| +...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35667888888874 345677777888888888888888888888742 34 67788888877544 2356677777
Q ss_pred HHHHhccCC-----------CC-------CchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 504 AMKLLELDP-----------QD-------SGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 504 ~~~~~~~~p-----------~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
|.+.+..-. +- ..++..+...+.++|-.+.|..+++-+.+.+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 776654211 00 11244556667789999999999999988766
No 484
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.13 E-value=2.5e+02 Score=22.84 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=34.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcc-cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCC
Q 007818 302 EMQATGIKPDAVTTVHCLSACSQ-LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 302 ~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (588)
.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 345566665554433 2333333 34566777888888777766666665555566665553
No 485
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.39 E-value=3.2e+02 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=13.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.++....+.|+.++|.+.|.++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 4445555666666666666665
No 486
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.23 E-value=1.8e+02 Score=21.00 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 201 EIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
++|+.....|+..|+.+|..+++...-.=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666667777777777777777666666666666666666
No 487
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.97 E-value=4.6e+02 Score=25.79 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC-----------CCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 251 TMIVGYAKFGFLDIARKIFDDLP-----------EKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304 (588)
Q Consensus 251 ~ll~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 304 (588)
.+++.++-.|++..|.++++.+. .-.+.++..+.-+|.-.+++.+|.+.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554442 2233345566666777777777777776653
No 488
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.60 E-value=54 Score=25.92 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=22.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLS 320 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 320 (588)
...|.-.+|-.+|+.|.+.|-+||. ++.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3445667888999999999988885 344443
No 489
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.52 E-value=7.3e+02 Score=27.86 Aligned_cols=182 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChhHHHHHhcc-------CCCCCcccHHHHHHHHHhC-CChhHHHHHHHHhHHCCCCCCcchHHHHH---
Q 007818 119 AVIHVFVSCGDLGLACNVFDE-------SCVRNLVSWNSLINGFVRS-GFPREAIRLFRDMQLERVEPDEVTMIGMV--- 187 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~-------~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--- 187 (588)
..+.-+...+++.+|..+.++ +...++..|-.=+..+.++ ++.+-.-.++..+.+..+ +...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccccccccccc
Q ss_pred ---------HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHhcCCCCcchHHHHHHHH
Q 007818 188 ---------SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG--KLESAEEIFDSMVNKTVVSCTTMIVGY 256 (588)
Q Consensus 188 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~ll~~~ 256 (588)
......+++...-+.+....+. ..........++.+|++.+ +++.|+.....+.+.+.......+...
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl 855 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYL 855 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHh
Q ss_pred HhcCCHHHHHHHhhhCCC------------CCcccHHHHHHHHHhc-------------CChHHHHHHHHHH
Q 007818 257 AKFGFLDIARKIFDDLPE------------KYVVPWNAIIGGYVQA-------------KRSKEALALFHEM 303 (588)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~------------~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~ 303 (588)
+-.-+.++-.+.--.+-+ +|+.-|-..++-+.+. +++++|++.+.++
T Consensus 856 ~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 856 CFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 490
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=7.7e+02 Score=28.01 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=9.0
Q ss_pred hHhcCChhHHHHHhccC
Q 007818 357 YAKCGNIAKALQVFHEM 373 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~ 373 (588)
|...|+..+|...|.+.
T Consensus 930 yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eecCCchHHHHHHHHHH
Confidence 44555555555555443
No 491
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.84 E-value=3.8e+02 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007818 45 SWNVAIRGFLETGKMREAVDLYKQMLR 71 (588)
Q Consensus 45 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 71 (588)
-...+++.+.+.+....|.++.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 356788888888888888888887754
No 492
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.71 E-value=3.2e+02 Score=23.44 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=37.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCC--------------CChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 185 GMVSACAQLEDLNLGREIHWYISESGLT--------------LTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 185 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++..|.+..++.++.++++.+.+..+. +--...|.....+.+.|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4556666777777777777777654322 2223556777777778888888777764
No 493
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.54 E-value=2.4e+02 Score=31.92 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=84.4
Q ss_pred HHhccCCchHHHHH------HHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-CHhHH
Q 007818 421 SACCHGGLVDEGRK------YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAA-DVVVW 484 (588)
Q Consensus 421 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~ 484 (588)
..+...|.+.++.+ ++...... -.++....|..+...+.+.|+.++|...-.... ..| +...+
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 33444566666666 55544332 334557889999999999999999998876652 113 34455
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhcc--------CCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLEL--------DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
..+.-.+...++...|...+.++.++ .|+-..+..++..++...++++.|.++++.+.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555556667888888888777653 244455567777778888999999999999976
No 494
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.38 E-value=1.6e+02 Score=30.31 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.+.-.|....+.+.|.++++++-+.+|.++..-.....+...-|+-++|+.........
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 33334555667777777777777777777766666777777777777777777666543
No 495
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.03 E-value=3.3e+02 Score=23.38 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=9.7
Q ss_pred hHhcCChhHHHHHhccCC
Q 007818 357 YAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~ 374 (588)
....|++++|..-++++.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 344555666665555543
No 496
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.62 E-value=4.5e+02 Score=24.87 Aligned_cols=117 Identities=8% Similarity=0.019 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc------cCCchHHHHHHHHHhhhhcCCCCChH-HHHHHHHHHHhcCChH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACC------HGGLVDEGRKYFAQMSSIFRLSPKLK-HYSCMVDLLGRSGLLE 466 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 466 (588)
.+++..++++....+ .|.+......|.++- ..-+|.....+|+.+... .|++. +.|. .-+....--.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehH-HHHHHHhhhHH
Confidence 577888888888877 588887777766553 234677777888777654 34432 2222 22333444466
Q ss_pred HHHHHHHhCCCCCC---H-hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 467 EAEQLIRSMPMAAD---V-VVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 467 ~A~~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.++.+++.+..+|. . ..+..-...+.+.|..++|...|++++.+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 67777777654432 1 1223333347788999999999999998887643
No 497
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.22 E-value=3.8e+02 Score=23.89 Aligned_cols=133 Identities=9% Similarity=0.056 Sum_probs=0.0
Q ss_pred ccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChh
Q 007818 36 FNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY 115 (588)
Q Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 115 (588)
+.|...-..+....+..|...-++.-|-..++++.+ +.--...+--|.+..+..--.++.+-.+..+++.+..
T Consensus 123 DSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiE-------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~d 195 (333)
T KOG0991|consen 123 DSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIE-------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDD 195 (333)
T ss_pred chhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhh-------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcc
Q ss_pred HHHHHHHHHHhCCChhHHHHHhcc----------------CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 007818 116 VHNAVIHVFVSCGDLGLACNVFDE----------------SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178 (588)
Q Consensus 116 ~~~~l~~~~~~~~~~~~A~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (588)
-..+++-. ..||...|+..++. ...|.+.....++..+.+. ++++|.+++.++-+.|..|
T Consensus 196 gLeaiift--a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 196 GLEAIIFT--AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSP 271 (333)
T ss_pred hHHHhhhh--ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCH
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.04 E-value=1.9e+02 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.126 Sum_probs=20.1
Q ss_pred CCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
|-.|....+|+-.|.+.|+-|.|.+-|+.=
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 334666667777777777777777666654
No 499
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.97 E-value=5.8e+02 Score=25.86 Aligned_cols=86 Identities=7% Similarity=-0.007 Sum_probs=45.3
Q ss_pred hcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH
Q 007818 108 LGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185 (588)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 185 (588)
.|+..+......++. ...|+...|+.++++... ....++.. +.+++ |. ++...+..
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~-------------V~~~l------g~-~~~~~~~~ 253 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVK-------------IRKMI------GY-HGIEFLTS 253 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHH-------------HHHHh------CC-CCHHHHHH
Confidence 456556665555443 246888888888776310 11111111 11111 32 24444555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCCh
Q 007818 186 MVSACAQLEDLNLGREIHWYISESGLTLTV 215 (588)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 215 (588)
++.++...+....+..++..+.+.|..|..
T Consensus 254 l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 254 FIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 555555555556777777777777766543
No 500
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.41 E-value=4.4e+02 Score=24.31 Aligned_cols=110 Identities=9% Similarity=0.028 Sum_probs=53.2
Q ss_pred hhHHHHHhccCCCC-CcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-----C--chH
Q 007818 363 IAKALQVFHEMPER-NSLTYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-----G--LVD 430 (588)
Q Consensus 363 ~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~--~~~ 430 (588)
...|.++|+...+. .+.....|...|.. ..+..+|..+|+...+.|..+...+...+...+... - +..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 44455555433322 22233334444333 235667777777777666333222222233333221 1 223
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCC
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEEAEQLIRSMP 476 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 476 (588)
.|...+.++... + +......+...|.. ..+..+|..+|+...
T Consensus 173 ~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 173 KALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred hHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 677777777664 3 34444444544432 236677777777664
Done!