Query 007818
Match_columns 588
No_of_seqs 606 out of 3194
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 11:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-41 5.7E-46 352.0 39.7 492 24-525 65-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-39 7.4E-44 336.1 36.3 479 54-545 64-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8E-27 2.7E-31 227.8 39.1 369 154-530 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.8E-30 219.7 37.3 352 186-544 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.3E-27 1.5E-31 232.9 22.3 182 280-462 29-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 4.7E-27 1.6E-31 232.6 20.3 185 43-228 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 5.3E-24 1.8E-28 216.2 36.2 440 43-545 6-479 (514)
8 3fp2_A TPR repeat-containing p 99.9 5.9E-23 2E-27 209.8 33.1 430 80-545 26-492 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.8E-26 195.5 34.5 339 144-541 25-406 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.4E-21 8.1E-26 196.7 35.8 455 11-522 7-490 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.5E-21 5.2E-26 199.3 34.1 445 42-520 24-501 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 9E-21 3.1E-25 188.9 27.0 304 214-545 25-359 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 7.9E-19 2.7E-23 169.0 28.6 303 214-544 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.7E-18 5.7E-23 166.7 29.7 321 180-528 3-353 (359)
15 3hym_B Cell division cycle pro 99.8 2.9E-18 9.9E-23 163.0 28.1 250 280-532 59-322 (330)
16 3hym_B Cell division cycle pro 99.8 3.3E-18 1.1E-22 162.6 27.2 266 275-545 20-300 (330)
17 2xm6_A Protein corresponding t 99.8 5.2E-17 1.8E-21 163.1 35.4 377 99-527 27-452 (490)
18 1fch_A Peroxisomal targeting s 99.8 1.5E-18 5.1E-23 167.8 22.3 261 278-542 65-357 (368)
19 1xi4_A Clathrin heavy chain; a 99.8 3.6E-15 1.2E-19 156.7 47.9 413 81-539 987-1440(1630)
20 2xm6_A Protein corresponding t 99.8 2.8E-16 9.6E-21 157.8 37.7 353 143-546 37-434 (490)
21 1xi4_A Clathrin heavy chain; a 99.8 1.4E-15 4.9E-20 159.6 43.6 353 144-539 984-1340(1630)
22 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4E-22 157.4 24.1 300 10-373 6-308 (449)
23 2ooe_A Cleavage stimulation fa 99.8 8.1E-16 2.8E-20 156.1 38.0 211 330-545 256-493 (530)
24 2ooe_A Cleavage stimulation fa 99.8 6.3E-16 2.1E-20 156.9 36.0 404 102-513 2-495 (530)
25 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4E-21 147.8 27.9 240 283-536 40-286 (291)
26 4eqf_A PEX5-related protein; a 99.8 1.1E-17 3.9E-22 161.4 20.8 260 277-540 65-352 (365)
27 1b89_A Protein (clathrin heavy 99.8 4.3E-17 1.5E-21 153.5 22.0 347 126-540 15-368 (449)
28 3cv0_A Peroxisome targeting si 99.8 3.4E-17 1.2E-21 155.3 21.2 260 279-543 23-314 (327)
29 4g1t_A Interferon-induced prot 99.8 2E-16 6.7E-21 158.5 26.6 370 144-554 50-469 (472)
30 1fch_A Peroxisomal targeting s 99.7 2.2E-16 7.6E-21 152.5 23.0 286 55-372 37-355 (368)
31 3mkr_A Coatomer subunit epsilo 99.7 9.1E-17 3.1E-21 148.5 19.3 247 284-545 6-265 (291)
32 4eqf_A PEX5-related protein; a 99.7 1.5E-16 5.1E-21 153.5 19.9 232 311-545 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 2.4E-14 8.3E-19 143.2 33.2 304 159-522 152-471 (472)
34 2pl2_A Hypothetical conserved 99.7 8.3E-16 2.8E-20 135.8 17.4 196 344-542 2-212 (217)
35 3uq3_A Heat shock protein STI1 99.7 3.2E-15 1.1E-19 136.3 20.0 218 315-545 8-237 (258)
36 3cv0_A Peroxisome targeting si 99.7 2.3E-14 7.9E-19 135.7 25.1 278 42-374 20-313 (327)
37 3uq3_A Heat shock protein STI1 99.7 3.5E-15 1.2E-19 136.0 18.3 235 280-524 8-256 (258)
38 3u4t_A TPR repeat-containing p 99.6 2.7E-14 9.2E-19 131.3 21.1 246 280-529 6-269 (272)
39 3e4b_A ALGK; tetratricopeptide 99.6 8.5E-14 2.9E-18 137.4 25.9 381 85-544 9-421 (452)
40 3e4b_A ALGK; tetratricopeptide 99.6 4.8E-14 1.6E-18 139.2 24.0 302 232-548 55-391 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.7E-14 1.3E-18 130.6 19.5 241 289-538 17-269 (275)
42 3spa_A Mtrpol, DNA-directed RN 99.6 3.6E-16 1.2E-20 159.2 5.7 147 10-159 127-286 (1134)
43 1ouv_A Conserved hypothetical 99.6 3E-13 1E-17 124.4 24.3 219 317-547 11-254 (273)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.8E-18 124.9 20.6 197 347-545 37-239 (252)
45 3spa_A Mtrpol, DNA-directed RN 99.6 1.1E-15 3.6E-20 155.8 6.6 124 114-241 127-258 (1134)
46 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-13 4.9E-18 118.1 18.9 166 377-545 4-171 (184)
47 2q7f_A YRRB protein; TPR, prot 99.6 3.4E-14 1.2E-18 128.2 15.6 197 346-545 22-223 (243)
48 3u4t_A TPR repeat-containing p 99.6 1.9E-13 6.4E-18 125.6 20.6 229 314-546 5-252 (272)
49 2vq2_A PILW, putative fimbrial 99.6 2.7E-13 9.2E-18 120.5 20.6 197 347-545 8-212 (225)
50 2h6f_A Protein farnesyltransfe 99.6 3.6E-13 1.2E-17 128.6 21.3 243 280-527 100-365 (382)
51 2q7f_A YRRB protein; TPR, prot 99.6 5.5E-14 1.9E-18 126.8 14.8 180 347-529 57-241 (243)
52 2ho1_A Type 4 fimbrial biogene 99.5 9.5E-13 3.2E-17 119.4 22.2 204 314-520 39-248 (252)
53 1ouv_A Conserved hypothetical 99.5 1.3E-12 4.6E-17 119.9 23.1 225 277-514 6-255 (273)
54 2pl2_A Hypothetical conserved 99.5 3.7E-13 1.3E-17 118.7 18.3 194 41-241 3-211 (217)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.7E-13 1.6E-17 123.2 18.9 157 82-243 46-205 (275)
56 2h6f_A Protein farnesyltransfe 99.5 4E-13 1.4E-17 128.3 18.4 227 313-544 98-348 (382)
57 4e6h_A MRNA 3'-END-processing 99.5 5.4E-11 1.9E-15 121.3 34.9 433 59-516 48-576 (679)
58 4a1s_A PINS, partner of inscut 99.5 1.3E-13 4.5E-18 135.2 15.1 264 280-544 51-372 (411)
59 2vq2_A PILW, putative fimbrial 99.5 2.3E-12 7.7E-17 114.5 21.3 205 314-521 10-222 (225)
60 3sf4_A G-protein-signaling mod 99.5 3.3E-13 1.1E-17 132.0 17.0 262 281-543 13-335 (406)
61 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7.2E-18 135.5 14.6 191 346-540 101-317 (474)
62 3ro2_A PINS homolog, G-protein 99.5 3.5E-13 1.2E-17 127.9 15.4 263 281-544 9-332 (338)
63 3sf4_A G-protein-signaling mod 99.4 7.6E-13 2.6E-17 129.4 13.9 154 379-532 188-364 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.4 2.5E-12 8.5E-17 132.8 16.7 164 377-543 8-173 (723)
65 3vtx_A MAMA; tetratricopeptide 99.4 3.8E-12 1.3E-16 109.1 15.2 167 346-515 4-175 (184)
66 3as5_A MAMA; tetratricopeptide 99.4 7E-12 2.4E-16 107.4 16.7 163 380-545 10-174 (186)
67 2ond_A Cleavage stimulation fa 99.4 4.8E-11 1.7E-15 111.5 22.9 218 294-515 33-275 (308)
68 3ulq_A Response regulator aspa 99.4 4.6E-11 1.6E-15 115.7 23.0 229 283-543 109-367 (383)
69 3nf1_A KLC 1, kinesin light ch 99.4 4.5E-13 1.5E-17 125.7 8.3 235 280-544 30-307 (311)
70 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4.2E-14 111.4 32.7 212 245-459 342-584 (679)
71 4i17_A Hypothetical protein; T 99.4 1.5E-11 5.2E-16 109.4 16.2 165 379-545 8-210 (228)
72 3ulq_A Response regulator aspa 99.4 6.5E-12 2.2E-16 121.7 14.9 189 353-541 109-332 (383)
73 4a1s_A PINS, partner of inscut 99.4 5.4E-12 1.8E-16 123.6 14.1 135 379-513 224-375 (411)
74 1hz4_A MALT regulatory protein 99.4 4.7E-10 1.6E-14 108.1 27.0 262 283-544 20-322 (373)
75 3ro2_A PINS homolog, G-protein 99.3 1.1E-11 3.7E-16 117.6 14.1 135 379-513 184-335 (338)
76 2ond_A Cleavage stimulation fa 99.3 1.2E-10 4.1E-15 108.8 20.8 213 329-546 33-272 (308)
77 4i17_A Hypothetical protein; T 99.3 5.1E-11 1.8E-15 106.0 17.2 206 310-526 5-225 (228)
78 4abn_A Tetratricopeptide repea 99.3 1.9E-11 6.5E-16 121.4 15.1 179 363-545 84-288 (474)
79 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.3E-15 99.5 17.2 167 348-517 9-180 (186)
80 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-11 3.7E-16 116.2 10.7 238 246-513 27-310 (311)
81 3q15_A PSP28, response regulat 99.2 1E-09 3.4E-14 106.0 22.3 233 284-543 108-364 (378)
82 1qqe_A Vesicular transport pro 99.2 2.2E-10 7.4E-15 106.0 14.2 188 356-543 46-268 (292)
83 3q15_A PSP28, response regulat 99.2 5.6E-10 1.9E-14 107.7 17.3 189 352-540 106-328 (378)
84 3mv2_B Coatomer subunit epsilo 99.2 3.4E-09 1.2E-13 95.8 20.5 162 378-544 100-282 (310)
85 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.1E-09 3.9E-14 96.8 17.1 181 349-548 6-217 (225)
86 3edt_B KLC 2, kinesin light ch 99.2 2.7E-10 9.1E-15 104.9 13.4 222 323-544 12-281 (283)
87 1hz4_A MALT regulatory protein 99.2 3E-08 1E-12 95.4 28.2 228 152-404 21-279 (373)
88 3qky_A Outer membrane assembly 99.1 1.4E-09 4.9E-14 98.8 17.4 181 348-545 16-225 (261)
89 4ga2_A E3 SUMO-protein ligase 99.1 6.2E-11 2.1E-15 97.3 7.0 143 384-530 3-149 (150)
90 2fo7_A Synthetic consensus TPR 99.1 1.1E-09 3.7E-14 88.0 14.3 128 416-545 4-133 (136)
91 3rjv_A Putative SEL1 repeat pr 99.1 7.5E-09 2.6E-13 90.4 19.1 163 376-547 16-200 (212)
92 1qqe_A Vesicular transport pro 99.1 1.3E-09 4.4E-14 100.8 14.0 173 349-521 79-280 (292)
93 3qou_A Protein YBBN; thioredox 99.1 2E-09 6.7E-14 99.2 15.1 176 364-543 103-283 (287)
94 3mv2_B Coatomer subunit epsilo 99.1 5.1E-09 1.7E-13 94.6 17.1 182 331-520 85-292 (310)
95 3qky_A Outer membrane assembly 99.1 1.3E-09 4.3E-14 99.2 13.3 203 310-533 13-250 (261)
96 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.7E-14 113.9 14.0 168 358-529 402-582 (681)
97 4gyw_A UDP-N-acetylglucosamine 99.1 4E-09 1.4E-13 109.0 17.6 162 42-208 8-173 (723)
98 2r5s_A Uncharacterized protein 99.0 2.1E-09 7.1E-14 91.0 12.5 159 381-543 9-172 (176)
99 2fo7_A Synthetic consensus TPR 99.0 6E-09 2.1E-13 83.5 14.7 131 380-513 3-135 (136)
100 2vsy_A XCC0866; transferase, g 99.0 3.1E-09 1E-13 108.6 15.9 160 360-522 2-169 (568)
101 4ga2_A E3 SUMO-protein ligase 99.0 3.9E-10 1.3E-14 92.5 7.3 125 419-545 3-130 (150)
102 3gyz_A Chaperone protein IPGC; 99.0 1.4E-09 4.7E-14 88.6 9.9 98 449-546 36-135 (151)
103 3edt_B KLC 2, kinesin light ch 99.0 5.1E-09 1.8E-13 96.2 15.1 200 312-511 43-282 (283)
104 3urz_A Uncharacterized protein 99.0 8.4E-09 2.9E-13 89.9 13.5 128 382-513 58-189 (208)
105 2vsy_A XCC0866; transferase, g 99.0 1.8E-08 6.3E-13 102.8 18.1 150 392-544 3-157 (568)
106 2pzi_A Probable serine/threoni 99.0 2.6E-09 9E-14 111.0 11.8 154 389-546 402-565 (681)
107 4gco_A Protein STI-1; structur 98.9 7.3E-09 2.5E-13 81.8 10.9 94 451-544 15-110 (126)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 2.1E-08 7.2E-13 93.4 15.6 218 290-537 4-254 (307)
109 3urz_A Uncharacterized protein 98.9 6.8E-09 2.3E-13 90.5 11.5 158 384-546 10-188 (208)
110 2uy1_A Cleavage stimulation fa 98.9 1.5E-06 5.1E-11 86.1 29.5 368 114-509 15-412 (493)
111 2vgx_A Chaperone SYCD; alterna 98.9 3.5E-09 1.2E-13 86.4 8.9 98 448-545 20-119 (148)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.9E-08 1.3E-12 86.1 15.8 129 380-514 8-154 (213)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 8.7E-09 3E-13 96.0 12.0 197 324-542 3-222 (307)
114 4gco_A Protein STI-1; structur 98.9 1.8E-08 6.2E-13 79.5 11.9 115 409-525 8-125 (126)
115 3u3w_A Transcriptional activat 98.9 1.2E-07 4.3E-12 87.5 19.1 161 383-543 80-265 (293)
116 3qou_A Protein YBBN; thioredox 98.9 2.4E-08 8.1E-13 91.9 13.7 136 410-547 114-251 (287)
117 2qfc_A PLCR protein; TPR, HTH, 98.9 7.7E-08 2.6E-12 88.9 16.8 163 380-543 77-265 (293)
118 1a17_A Serine/threonine protei 98.8 4.2E-08 1.4E-12 81.8 13.4 127 415-543 15-145 (166)
119 2e2e_A Formate-dependent nitri 98.8 1.6E-08 5.4E-13 85.6 10.2 120 424-545 21-145 (177)
120 3dra_A Protein farnesyltransfe 98.8 7.1E-07 2.4E-11 81.6 21.6 149 392-543 124-286 (306)
121 2xcb_A PCRH, regulatory protei 98.8 2.7E-08 9.1E-13 80.6 10.0 96 449-544 18-115 (142)
122 2uy1_A Cleavage stimulation fa 98.8 1.2E-06 4.2E-11 86.7 23.3 122 280-405 289-411 (493)
123 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.9E-12 83.9 14.3 184 312-516 4-219 (225)
124 2lni_A Stress-induced-phosphop 98.8 7.5E-08 2.6E-12 76.8 12.0 115 414-530 17-133 (133)
125 3rjv_A Putative SEL1 repeat pr 98.8 2.5E-07 8.4E-12 80.7 16.1 174 331-512 5-199 (212)
126 2vyi_A SGTA protein; chaperone 98.8 7E-08 2.4E-12 76.6 11.6 117 413-531 12-130 (131)
127 2r5s_A Uncharacterized protein 98.8 7.9E-08 2.7E-12 81.1 12.4 156 350-509 9-172 (176)
128 1na0_A Designed protein CTPR3; 98.8 1.2E-07 4.1E-12 74.5 12.7 115 413-529 9-125 (125)
129 3upv_A Heat shock protein STI1 98.7 6.8E-08 2.3E-12 76.3 10.8 97 449-545 4-102 (126)
130 3dra_A Protein farnesyltransfe 98.7 6.7E-06 2.3E-10 75.1 25.3 229 290-524 46-302 (306)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.1E-07 1.4E-11 79.4 16.6 123 350-475 9-147 (213)
132 2kck_A TPR repeat; tetratricop 98.7 8.2E-08 2.8E-12 73.8 10.3 100 448-547 5-109 (112)
133 2c2l_A CHIP, carboxy terminus 98.7 1.4E-08 4.6E-13 93.1 6.4 188 348-544 5-199 (281)
134 1p5q_A FKBP52, FK506-binding p 98.7 1.2E-07 4.1E-12 89.3 12.6 94 449-542 196-292 (336)
135 1hxi_A PEX5, peroxisome target 98.7 6.4E-08 2.2E-12 75.7 9.0 95 451-545 19-115 (121)
136 2vgx_A Chaperone SYCD; alterna 98.7 4.2E-08 1.4E-12 79.9 7.3 106 413-520 21-128 (148)
137 3u3w_A Transcriptional activat 98.7 2.2E-06 7.7E-11 79.0 19.8 202 300-510 34-266 (293)
138 3q49_B STIP1 homology and U bo 98.7 2.7E-07 9.2E-12 74.0 11.9 99 447-545 7-107 (137)
139 3gyz_A Chaperone protein IPGC; 98.7 2.8E-07 9.6E-12 74.9 12.0 104 410-515 32-138 (151)
140 4gcn_A Protein STI-1; structur 98.7 1.2E-07 4.1E-12 74.9 9.5 95 450-544 9-112 (127)
141 3sz7_A HSC70 cochaperone (SGT) 98.6 1.5E-07 5.1E-12 78.4 10.4 110 412-523 10-121 (164)
142 2e2e_A Formate-dependent nitri 98.6 2.1E-07 7.1E-12 78.6 10.7 128 389-519 21-153 (177)
143 4f3v_A ESX-1 secretion system 98.6 1.9E-07 6.3E-12 83.3 10.5 192 324-521 18-247 (282)
144 1elw_A TPR1-domain of HOP; HOP 98.6 4.2E-07 1.4E-11 70.4 11.5 95 450-544 5-101 (118)
145 2lni_A Stress-induced-phosphop 98.6 3.7E-07 1.3E-11 72.6 11.4 100 446-545 13-114 (133)
146 4f3v_A ESX-1 secretion system 98.6 1.2E-07 4.2E-12 84.5 9.0 124 419-545 108-238 (282)
147 3gw4_A Uncharacterized protein 98.6 1.1E-06 3.7E-11 76.0 15.1 153 390-543 4-175 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.6 6.5E-07 2.2E-11 69.3 12.4 111 413-525 4-116 (118)
149 2fbn_A 70 kDa peptidylprolyl i 98.6 3.3E-07 1.1E-11 79.0 11.4 167 357-544 14-186 (198)
150 2dba_A Smooth muscle cell asso 98.6 6.8E-07 2.3E-11 72.7 12.4 94 450-543 29-127 (148)
151 3upv_A Heat shock protein STI1 98.6 4.7E-07 1.6E-11 71.4 10.5 111 414-526 5-123 (126)
152 1na0_A Designed protein CTPR3; 98.6 7.3E-07 2.5E-11 69.9 11.7 97 449-545 9-107 (125)
153 2hr2_A Hypothetical protein; a 98.5 3.5E-07 1.2E-11 73.4 9.1 63 482-544 58-131 (159)
154 2xcb_A PCRH, regulatory protei 98.5 4.4E-07 1.5E-11 73.3 9.8 107 415-523 20-128 (142)
155 2qfc_A PLCR protein; TPR, HTH, 98.5 3.4E-06 1.1E-10 77.8 17.0 162 349-510 77-266 (293)
156 3sz7_A HSC70 cochaperone (SGT) 98.5 8.6E-07 2.9E-11 73.7 11.7 96 449-544 11-108 (164)
157 2dba_A Smooth muscle cell asso 98.5 2.5E-06 8.6E-11 69.2 14.0 113 412-527 27-145 (148)
158 2vyi_A SGTA protein; chaperone 98.5 6.6E-07 2.2E-11 70.8 10.1 98 448-545 11-110 (131)
159 1a17_A Serine/threonine protei 98.5 2E-06 7E-11 71.4 13.2 128 379-509 14-145 (166)
160 2xev_A YBGF; tetratricopeptide 98.5 7.3E-07 2.5E-11 70.6 9.6 90 455-544 8-105 (129)
161 3gw4_A Uncharacterized protein 98.5 9.5E-07 3.3E-11 76.3 11.0 153 359-511 4-177 (203)
162 3q49_B STIP1 homology and U bo 98.4 1.2E-06 4.2E-11 70.1 10.5 113 411-525 7-126 (137)
163 3rkv_A Putative peptidylprolyl 98.4 8.3E-07 2.8E-11 73.6 9.3 63 482-544 64-126 (162)
164 3k9i_A BH0479 protein; putativ 98.4 2.6E-07 8.9E-12 71.7 5.6 83 462-544 3-90 (117)
165 1wao_1 Serine/threonine protei 98.4 7.1E-07 2.4E-11 88.3 9.8 118 420-539 13-134 (477)
166 1wao_1 Serine/threonine protei 98.4 3E-06 1E-10 83.8 14.3 84 389-475 17-100 (477)
167 1elr_A TPR2A-domain of HOP; HO 98.4 8.9E-07 3E-11 70.1 8.4 107 415-524 6-121 (131)
168 3q7a_A Farnesyltransferase alp 98.4 1.6E-05 5.6E-10 73.4 17.6 171 288-464 65-257 (349)
169 3q7a_A Farnesyltransferase alp 98.4 0.00016 5.6E-09 66.7 23.6 240 292-554 52-340 (349)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.8E-06 1.3E-10 82.7 13.7 94 449-542 317-413 (457)
171 2fbn_A 70 kDa peptidylprolyl i 98.4 3.4E-07 1.2E-11 78.9 5.5 118 426-545 17-152 (198)
172 2c2l_A CHIP, carboxy terminus 98.4 3E-06 1E-10 77.5 12.0 113 412-526 3-117 (281)
173 4b4t_Q 26S proteasome regulato 98.3 7E-06 2.4E-10 80.5 15.1 163 381-543 58-244 (434)
174 4gcn_A Protein STI-1; structur 98.3 2E-06 7E-11 67.7 9.1 101 416-519 11-120 (127)
175 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6.2E-11 81.2 10.3 147 379-545 180-329 (338)
176 2kck_A TPR repeat; tetratricop 98.3 3.8E-06 1.3E-10 64.2 10.2 100 414-515 7-111 (112)
177 1hxi_A PEX5, peroxisome target 98.3 2.9E-06 9.8E-11 66.1 9.4 98 416-515 20-119 (121)
178 2xev_A YBGF; tetratricopeptide 98.3 6.2E-06 2.1E-10 65.0 11.4 103 419-523 8-118 (129)
179 1elr_A TPR2A-domain of HOP; HO 98.3 4.7E-06 1.6E-10 65.8 10.8 95 450-544 5-108 (131)
180 3ro3_A PINS homolog, G-protein 98.3 3.9E-06 1.3E-10 69.2 10.7 129 415-543 11-157 (164)
181 1p5q_A FKBP52, FK506-binding p 98.3 1.7E-06 5.8E-11 81.4 8.9 136 25-164 126-283 (336)
182 3dss_A Geranylgeranyl transfer 98.3 6.9E-05 2.4E-09 68.9 18.7 178 364-544 91-304 (331)
183 1ihg_A Cyclophilin 40; ppiase 98.3 4.6E-06 1.6E-10 79.3 11.0 90 448-537 272-363 (370)
184 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.6E-11 68.2 5.3 93 426-519 3-99 (117)
185 3rkv_A Putative peptidylprolyl 98.2 2.7E-06 9.2E-11 70.4 7.8 78 448-525 62-142 (162)
186 1dce_A Protein (RAB geranylger 98.2 3.8E-05 1.3E-09 77.3 17.5 169 362-533 44-244 (567)
187 3ma5_A Tetratricopeptide repea 98.2 6.5E-06 2.2E-10 61.5 8.8 65 480-544 6-70 (100)
188 3n71_A Histone lysine methyltr 98.2 7.1E-06 2.4E-10 80.5 10.9 122 423-544 319-464 (490)
189 2l6j_A TPR repeat-containing p 98.2 7.7E-07 2.6E-11 68.2 2.8 93 448-540 3-103 (111)
190 3dss_A Geranylgeranyl transfer 98.1 6.7E-05 2.3E-09 69.0 15.8 184 359-545 41-268 (331)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 8.3E-06 2.8E-10 76.7 9.6 151 348-515 180-333 (338)
192 1klx_A Cysteine rich protein B 98.1 2.7E-05 9.1E-10 62.1 10.6 112 428-547 10-129 (138)
193 2hr2_A Hypothetical protein; a 98.1 6.3E-06 2.2E-10 66.1 6.6 73 451-523 59-144 (159)
194 3bee_A Putative YFRE protein; 98.1 2.3E-05 7.8E-10 57.1 9.0 69 479-547 4-75 (93)
195 2kat_A Uncharacterized protein 98.1 1.3E-05 4.5E-10 61.7 8.2 77 468-544 4-82 (115)
196 4b4t_Q 26S proteasome regulato 98.1 5.4E-05 1.8E-09 74.2 14.6 159 385-543 11-203 (434)
197 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.2E-10 65.1 9.5 133 380-512 11-160 (164)
198 1na3_A Designed protein CTPR2; 98.0 1.7E-05 5.9E-10 57.8 8.2 81 449-529 9-91 (91)
199 1ihg_A Cyclophilin 40; ppiase 98.0 1.6E-05 5.6E-10 75.5 9.7 112 415-545 225-337 (370)
200 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.8E-05 1.3E-09 75.6 12.4 97 449-545 268-381 (457)
201 1zu2_A Mitochondrial import re 98.0 4.6E-06 1.6E-10 66.8 4.3 96 427-546 16-122 (158)
202 2l6j_A TPR repeat-containing p 98.0 2.6E-05 8.8E-10 59.4 8.2 67 480-546 3-69 (111)
203 3n71_A Histone lysine methyltr 97.9 3.5E-05 1.2E-09 75.6 9.2 111 457-585 317-445 (490)
204 1dce_A Protein (RAB geranylger 97.9 0.0002 7E-09 72.0 14.4 152 392-547 43-224 (567)
205 3lvg_A Clathrin heavy chain 1; 97.8 2.3E-05 7.9E-10 73.4 6.7 410 8-471 52-534 (624)
206 1klx_A Cysteine rich protein B 97.8 0.00025 8.7E-09 56.4 11.9 112 392-512 9-128 (138)
207 1na3_A Designed protein CTPR2; 97.8 6.8E-05 2.3E-09 54.5 8.0 66 480-545 8-73 (91)
208 3qww_A SET and MYND domain-con 97.8 6.4E-05 2.2E-09 72.4 8.8 105 461-583 310-432 (433)
209 2kat_A Uncharacterized protein 97.7 9.5E-05 3.2E-09 56.7 7.7 81 431-513 3-85 (115)
210 1zu2_A Mitochondrial import re 97.7 2.8E-05 9.5E-10 62.2 4.5 126 388-544 12-147 (158)
211 3qwp_A SET and MYND domain-con 97.6 0.0003 1E-08 67.9 11.0 113 456-586 294-424 (429)
212 2kc7_A BFR218_protein; tetratr 97.6 0.00017 5.7E-09 53.5 7.3 79 455-541 6-87 (99)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00012 4E-09 54.3 5.2 58 488-545 7-65 (99)
214 3lvg_A Clathrin heavy chain 1; 97.3 9E-06 3.1E-10 76.1 -3.8 261 113-398 53-324 (624)
215 3qww_A SET and MYND domain-con 97.3 0.00096 3.3E-08 64.3 9.8 95 425-519 310-425 (433)
216 3ma5_A Tetratricopeptide repea 97.3 0.00079 2.7E-08 49.9 7.2 63 378-441 7-69 (100)
217 3ly7_A Transcriptional activat 97.3 0.0095 3.3E-07 55.0 15.6 64 480-544 276-339 (372)
218 3ly7_A Transcriptional activat 97.3 0.0022 7.6E-08 59.1 11.3 139 375-515 191-344 (372)
219 3qwp_A SET and MYND domain-con 97.1 0.0022 7.6E-08 61.8 10.4 101 420-520 294-415 (429)
220 3u64_A Protein TP_0956; tetrat 97.1 0.0023 7.8E-08 56.5 9.0 86 466-551 180-276 (301)
221 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0048 1.6E-07 45.9 9.4 75 448-522 4-87 (104)
222 1wy6_A Hypothetical protein ST 97.0 0.033 1.1E-06 42.1 12.9 142 388-548 17-158 (172)
223 1pc2_A Mitochondria fission pr 96.9 0.0023 8E-08 50.5 6.8 92 427-520 12-110 (152)
224 1pc2_A Mitochondria fission pr 96.9 0.0041 1.4E-07 49.1 8.1 77 396-475 16-97 (152)
225 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0053 1.8E-07 45.7 7.7 66 480-545 4-76 (104)
226 3mkq_A Coatomer beta'-subunit; 96.7 0.086 2.9E-06 56.0 19.9 188 287-532 609-800 (814)
227 3bee_A Putative YFRE protein; 96.6 0.019 6.5E-07 41.5 9.7 70 446-515 3-77 (93)
228 3mkq_A Coatomer beta'-subunit; 96.6 0.041 1.4E-06 58.5 16.0 155 50-240 606-761 (814)
229 1qsa_A Protein (soluble lytic 96.4 0.93 3.2E-05 45.6 26.7 114 392-509 228-347 (618)
230 1nzn_A CGI-135 protein, fissio 96.0 0.069 2.4E-06 40.5 9.6 90 429-520 17-113 (126)
231 3mkq_B Coatomer subunit alpha; 95.9 0.22 7.4E-06 40.4 13.0 125 24-171 17-141 (177)
232 3mkq_B Coatomer subunit alpha; 95.9 0.5 1.7E-05 38.3 15.0 77 223-306 13-89 (177)
233 2wpv_A GET4, UPF0363 protein Y 95.6 1.2 4.1E-05 40.2 18.3 189 95-305 13-216 (312)
234 4h7y_A Dual specificity protei 95.6 0.16 5.5E-06 39.5 10.2 61 461-522 72-135 (161)
235 4ady_A RPN2, 26S proteasome re 95.5 3.1 0.00011 43.7 31.0 163 322-490 500-670 (963)
236 4gns_B Protein CSD3, chitin bi 95.4 0.071 2.4E-06 54.6 10.2 54 488-541 344-397 (754)
237 4ady_A RPN2, 26S proteasome re 95.3 3.4 0.00012 43.5 30.5 149 388-543 500-657 (963)
238 1nzn_A CGI-135 protein, fissio 95.0 0.049 1.7E-06 41.3 5.9 68 478-545 32-104 (126)
239 3lpz_A GET4 (YOR164C homolog); 95.0 2 7E-05 38.9 20.4 168 116-305 37-215 (336)
240 1wy6_A Hypothetical protein ST 94.9 0.85 2.9E-05 34.7 12.0 64 380-445 93-156 (172)
241 4h7y_A Dual specificity protei 94.9 0.19 6.5E-06 39.1 8.8 56 493-548 72-127 (161)
242 1y8m_A FIS1; mitochondria, unk 94.5 0.3 1E-05 37.7 9.0 74 446-519 36-115 (144)
243 3o48_A Mitochondria fission 1 93.6 0.2 6.7E-06 38.2 6.4 74 446-519 37-116 (134)
244 2ff4_A Probable regulatory pro 93.1 0.23 7.7E-06 47.1 7.8 69 484-552 174-247 (388)
245 3u64_A Protein TP_0956; tetrat 93.1 0.64 2.2E-05 41.2 9.9 61 380-442 201-269 (301)
246 1y8m_A FIS1; mitochondria, unk 91.6 2.6 8.7E-05 32.6 10.4 66 479-544 37-106 (144)
247 3o48_A Mitochondria fission 1 91.5 1.1 3.8E-05 34.1 8.2 65 410-475 37-104 (134)
248 3lpz_A GET4 (YOR164C homolog); 91.5 7.9 0.00027 35.2 22.8 168 349-543 37-215 (336)
249 3ffl_A Anaphase-promoting comp 91.3 1.1 3.8E-05 35.7 8.3 120 408-541 13-148 (167)
250 3txn_A 26S proteasome regulato 91.0 9.2 0.00031 35.9 15.7 57 384-440 105-166 (394)
251 3ffl_A Anaphase-promoting comp 90.7 1.2 4.2E-05 35.4 8.1 29 450-478 123-151 (167)
252 4b4t_P 26S proteasome regulato 90.5 13 0.00044 35.8 20.3 34 344-377 290-325 (445)
253 1v54_E Cytochrome C oxidase po 90.2 1.3 4.3E-05 31.6 6.8 63 393-457 25-87 (109)
254 1zbp_A Hypothetical protein VP 88.6 7.8 0.00027 33.8 12.1 55 387-442 6-60 (273)
255 4fhn_B Nucleoporin NUP120; pro 88.5 11 0.00039 41.4 16.6 50 252-302 818-867 (1139)
256 4gns_B Protein CSD3, chitin bi 87.6 4.1 0.00014 41.9 11.5 52 423-476 347-398 (754)
257 2wpv_A GET4, UPF0363 protein Y 87.3 16 0.00055 32.9 21.1 171 348-544 34-217 (312)
258 4fhn_B Nucleoporin NUP120; pro 86.6 34 0.0012 37.6 19.0 153 24-195 824-986 (1139)
259 3ltm_A Alpha-REP4; protein eng 86.3 14 0.00046 31.0 16.5 167 27-207 17-183 (211)
260 2ff4_A Probable regulatory pro 86.2 4.7 0.00016 38.0 10.5 69 383-452 176-248 (388)
261 2y69_E Cytochrome C oxidase su 85.9 2.9 0.0001 31.7 6.8 62 394-457 69-130 (152)
262 2uwj_G Type III export protein 85.8 7.3 0.00025 27.7 8.3 79 93-175 20-98 (115)
263 1v54_E Cytochrome C oxidase po 85.6 5.5 0.00019 28.5 7.7 59 465-523 26-87 (109)
264 1qsa_A Protein (soluble lytic 85.6 32 0.0011 34.6 35.2 265 115-406 73-347 (618)
265 4b4t_P 26S proteasome regulato 85.5 27 0.00091 33.6 19.0 95 381-475 140-244 (445)
266 2p58_C Putative type III secre 85.4 7.9 0.00027 27.6 8.3 79 93-175 21-99 (116)
267 1zbp_A Hypothetical protein VP 83.5 2.2 7.6E-05 37.1 6.2 54 460-513 8-63 (273)
268 2uwj_G Type III export protein 83.5 9.9 0.00034 27.0 8.8 86 328-418 22-107 (115)
269 3ltm_A Alpha-REP4; protein eng 82.9 20 0.00067 30.0 18.7 18 112-129 31-48 (211)
270 2p58_C Putative type III secre 82.8 11 0.00037 26.9 9.1 85 328-417 23-107 (116)
271 3ltj_A Alpharep-4; protein eng 80.6 23 0.00078 29.2 17.6 17 214-230 120-136 (201)
272 3ltj_A Alpharep-4; protein eng 79.8 24 0.00083 29.1 16.9 152 31-195 16-167 (201)
273 2y69_E Cytochrome C oxidase su 76.2 16 0.00054 27.8 7.7 63 58-122 68-130 (152)
274 4b4t_R RPN7, 26S proteasome re 75.5 14 0.0005 35.2 9.8 60 415-475 133-194 (429)
275 3esl_A Checkpoint serine/threo 71.8 41 0.0014 27.8 10.1 47 465-511 95-145 (202)
276 4b4t_R RPN7, 26S proteasome re 68.9 15 0.00053 35.0 8.3 109 348-457 132-251 (429)
277 3eu9_A Huntingtin-interacting 68.5 32 0.0011 29.1 9.8 115 13-140 10-132 (240)
278 3esl_A Checkpoint serine/threo 66.0 31 0.0011 28.5 8.2 64 92-155 92-156 (202)
279 1wdy_A 2-5A-dependent ribonucl 65.3 68 0.0023 27.8 14.2 114 119-240 7-127 (285)
280 1n11_A Ankyrin; clathrin, BAND 65.2 94 0.0032 29.4 14.3 13 25-37 24-36 (437)
281 3jxi_A Vanilloid receptor-rela 64.6 25 0.00086 30.4 8.4 92 50-143 9-119 (260)
282 1oyz_A Hypothetical protein YI 63.1 77 0.0026 27.7 21.4 62 447-512 204-265 (280)
283 3hra_A Ankyrin repeat family p 61.4 54 0.0018 26.7 9.6 14 25-38 15-28 (201)
284 3mv2_A Coatomer subunit alpha; 60.6 95 0.0033 27.9 13.2 62 472-547 196-259 (325)
285 3kea_A K1L; tropism, ANK repea 60.1 57 0.002 28.7 10.0 139 53-205 38-183 (285)
286 1wdy_A 2-5A-dependent ribonucl 59.9 86 0.0029 27.1 12.6 201 24-239 14-240 (285)
287 3b7b_A Euchromatic histone-lys 58.5 82 0.0028 26.4 10.5 17 323-339 218-234 (237)
288 3txn_A 26S proteasome regulato 57.5 1.2E+02 0.0043 28.2 24.1 88 446-546 253-345 (394)
289 3kae_A CDC27, possible protein 56.2 76 0.0026 25.4 11.5 81 459-542 43-141 (242)
290 4b4t_S RPN3, 26S proteasome re 54.6 48 0.0016 32.2 8.6 62 414-475 232-296 (523)
291 3bqo_A Telomeric repeat-bindin 54.4 75 0.0026 26.0 8.2 41 487-527 123-163 (211)
292 4a1g_A Mitotic checkpoint seri 54.1 51 0.0017 25.8 7.2 57 96-152 82-139 (152)
293 4a1g_A Mitotic checkpoint seri 52.9 81 0.0028 24.7 8.8 49 500-548 84-134 (152)
294 1k1a_A B-cell lymphoma 3-encod 52.6 1E+02 0.0035 25.8 12.1 19 91-109 18-36 (241)
295 1ya0_A SMG-7 transcript varian 52.5 46 0.0016 32.3 8.3 52 491-542 162-213 (497)
296 1bpo_A Protein (clathrin); cla 52.3 1.6E+02 0.0056 28.0 12.5 141 24-171 341-482 (494)
297 3hra_A Ankyrin repeat family p 51.7 95 0.0032 25.1 9.8 150 52-215 11-173 (201)
298 4ets_A Ferric uptake regulatio 51.5 59 0.002 25.8 7.5 71 59-130 13-85 (162)
299 2d2s_A Exocyst complex compone 51.0 62 0.0021 27.6 8.0 27 214-240 90-116 (235)
300 3eu9_A Huntingtin-interacting 50.4 1.1E+02 0.0038 25.5 10.6 20 121-140 46-65 (240)
301 3kea_A K1L; tropism, ANK repea 48.2 1.1E+02 0.0036 27.0 9.7 20 353-372 65-84 (285)
302 3jxi_A Vanilloid receptor-rela 47.9 74 0.0025 27.3 8.6 55 152-206 9-72 (260)
303 1k1a_A B-cell lymphoma 3-encod 47.8 1.2E+02 0.0042 25.3 11.9 86 50-140 13-102 (241)
304 2d2s_A Exocyst complex compone 47.7 56 0.0019 27.9 7.2 24 48-71 23-46 (235)
305 1n11_A Ankyrin; clathrin, BAND 46.9 1.9E+02 0.0065 27.2 13.9 330 50-413 18-372 (437)
306 3aji_A 26S proteasome non-ATPa 45.8 1.3E+02 0.0044 25.0 9.6 15 53-67 13-27 (231)
307 2wvi_A Mitotic checkpoint seri 45.7 1.1E+02 0.0038 24.3 8.9 32 480-511 95-126 (164)
308 1oyz_A Hypothetical protein YI 44.6 1.6E+02 0.0054 25.6 22.8 48 212-259 139-186 (280)
309 2xig_A Ferric uptake regulatio 43.1 80 0.0027 24.6 7.0 62 169-231 16-77 (150)
310 2w57_A Ferric uptake regulatio 42.6 80 0.0028 24.6 7.0 62 169-231 6-68 (150)
311 2fe3_A Peroxide operon regulat 41.7 79 0.0027 24.4 6.8 62 169-231 11-72 (145)
312 2nsz_A Programmed cell death p 41.2 62 0.0021 24.5 5.9 62 351-412 11-77 (129)
313 1mzb_A Ferric uptake regulatio 40.9 77 0.0026 24.1 6.5 61 170-231 8-69 (136)
314 4b4t_S RPN3, 26S proteasome re 40.7 61 0.0021 31.5 7.0 68 449-516 231-305 (523)
315 2rfa_A Transient receptor pote 39.4 1.3E+02 0.0044 25.1 8.6 55 155-213 128-184 (232)
316 2etb_A Transient receptor pote 37.9 1.4E+02 0.0049 25.3 8.8 90 50-142 6-115 (256)
317 2fu4_A Ferric uptake regulatio 37.3 93 0.0032 20.9 6.8 62 169-231 6-68 (83)
318 4gq2_M Nucleoporin NUP120; bet 37.0 1.6E+02 0.0054 31.6 10.3 86 419-510 816-926 (950)
319 4ets_A Ferric uptake regulatio 36.6 1.4E+02 0.0047 23.6 7.5 69 162-231 14-85 (162)
320 3ljn_A Hypothetical protein; a 36.2 2.1E+02 0.0071 26.0 10.1 16 225-240 180-195 (364)
321 2rfa_A Transient receptor pote 36.1 1.5E+02 0.005 24.7 8.4 148 24-178 12-184 (232)
322 1bd8_A P19INK4D CDK4/6 inhibit 35.6 82 0.0028 24.2 6.3 15 54-68 10-24 (156)
323 2nsz_A Programmed cell death p 35.3 1.4E+02 0.0049 22.4 7.9 25 219-243 11-35 (129)
324 2p1h_A APAF-1, apoptotic prote 34.1 1.1E+02 0.0039 21.3 6.0 60 98-161 24-83 (94)
325 2ion_A PDCD4, programmed cell 33.7 1.2E+02 0.004 23.8 6.5 26 219-244 13-38 (152)
326 2xig_A Ferric uptake regulatio 32.7 1.5E+02 0.0051 23.0 7.1 57 73-130 21-77 (150)
327 2ion_A PDCD4, programmed cell 32.5 57 0.002 25.6 4.5 63 350-412 12-79 (152)
328 2wvi_A Mitotic checkpoint seri 32.5 1.9E+02 0.0064 23.0 9.6 52 98-149 79-131 (164)
329 3ljn_A Hypothetical protein; a 32.0 2.8E+02 0.0097 25.1 10.3 23 287-309 91-113 (364)
330 2pnn_A Transient receptor pote 31.8 1.6E+02 0.0054 25.4 8.1 87 53-141 20-125 (273)
331 3eyy_A Putative iron uptake re 31.2 77 0.0026 24.5 5.1 60 170-231 9-68 (145)
332 4gq2_M Nucleoporin NUP120; bet 30.5 4.1E+02 0.014 28.4 12.1 52 16-70 816-867 (950)
333 4aez_C MAD3, mitotic spindle c 30.3 2.5E+02 0.0084 23.7 8.1 52 395-447 131-183 (223)
334 3twr_A Tankyrase-2; ankyrin re 29.9 1.9E+02 0.0065 22.2 8.1 13 25-37 18-30 (165)
335 2zu6_B Programmed cell death p 29.4 2.3E+02 0.0078 25.3 8.5 56 117-172 6-65 (307)
336 3ygs_P Procaspase 9; apoptosis 29.3 88 0.003 22.1 4.7 36 230-265 52-87 (97)
337 3mkr_B Coatomer subunit alpha; 29.1 3.2E+02 0.011 24.5 13.2 62 472-547 187-250 (320)
338 3ygs_P Procaspase 9; apoptosis 28.4 49 0.0017 23.5 3.2 32 27-58 52-83 (97)
339 1ug3_A EIF4GI, eukaryotic prot 28.4 3.4E+02 0.011 24.6 12.9 144 219-372 15-166 (339)
340 4aez_C MAD3, mitotic spindle c 28.3 2E+02 0.0068 24.2 7.2 33 479-511 148-180 (223)
341 2fe3_A Peroxide operon regulat 28.1 1.1E+02 0.0038 23.5 5.6 42 151-192 27-68 (145)
342 2b7e_A PRE-mRNA processing pro 27.3 62 0.0021 20.4 3.0 30 161-190 2-31 (59)
343 2qx5_A Nucleoporin NIC96; mRNA 26.8 5.1E+02 0.017 26.2 18.4 81 352-440 299-383 (661)
344 2p1h_A APAF-1, apoptotic prote 26.0 1.7E+02 0.0057 20.3 7.5 40 228-267 49-88 (94)
345 2pnn_A Transient receptor pote 25.8 2.6E+02 0.0088 24.0 8.4 20 156-175 21-40 (273)
346 1oai_A Nuclear RNA export fact 25.8 53 0.0018 20.7 2.6 25 56-80 33-57 (59)
347 3bu8_A Telomeric repeat-bindin 25.7 2.5E+02 0.0085 23.4 7.1 69 394-465 88-163 (235)
348 3t8k_A Uncharacterized protein 25.0 2.5E+02 0.0085 22.5 7.5 90 125-215 14-109 (186)
349 1ug3_A EIF4GI, eukaryotic prot 23.5 4.2E+02 0.014 24.0 11.8 57 13-71 14-74 (339)
350 3l6a_A Eukaryotic translation 23.3 2.7E+02 0.0093 25.6 8.0 126 116-241 14-148 (364)
351 1bpo_A Protein (clathrin); cla 23.3 5E+02 0.017 24.9 10.8 25 350-374 364-388 (494)
352 3mwm_A ZUR, putative metal upt 23.1 1.3E+02 0.0046 22.9 5.1 47 84-130 18-64 (139)
353 3mwm_A ZUR, putative metal upt 22.9 1.5E+02 0.0051 22.6 5.4 47 185-231 18-64 (139)
354 2o03_A Probable zinc uptake re 22.4 1.5E+02 0.005 22.3 5.2 47 84-130 15-61 (131)
355 2cfu_A SDSA1; SDS-hydrolase, l 22.1 1.6E+02 0.0055 29.9 6.8 61 466-529 437-497 (658)
356 2w57_A Ferric uptake regulatio 22.0 2.8E+02 0.0095 21.4 7.1 62 301-363 6-68 (150)
357 1mzb_A Ferric uptake regulatio 21.2 2.7E+02 0.0092 21.0 7.1 60 302-362 8-68 (136)
358 2o03_A Probable zinc uptake re 20.5 1.6E+02 0.0054 22.2 5.0 44 187-230 17-60 (131)
359 2ijq_A Hypothetical protein; s 20.2 3.2E+02 0.011 21.5 7.3 47 463-509 46-103 (161)
360 1bd8_A P19INK4D CDK4/6 inhibit 20.1 1.4E+02 0.0049 22.7 5.0 13 25-37 12-24 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-41 Score=352.00 Aligned_cols=492 Identities=10% Similarity=-0.029 Sum_probs=307.6
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
..|.+..++..|..++.++...|+.+++.+.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|..+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 567788888888888888999999999999999999999999999986 56888899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCC-------------------cccHHHHHHHHHhCCChhHH
Q 007818 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN-------------------LVSWNSLINGFVRSGFPREA 164 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~a 164 (588)
.+... +++..+++.++.+|.+.|++++|+++|++..+.+ ..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88653 6889999999999999999999999999754443 67899999999999999999
Q ss_pred HHHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHH--HH-HHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 165 IRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGR--EI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 165 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+++.++..|.+.|++++|.++|++
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999998753 43 334444444443333222111 11 33333333444445566667777778888888888888
Q ss_pred cCC--CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 241 MVN--KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 241 ~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
+.+ ++..+|..++..+.+.|++++|.++|+.+.. .+..+|+.++.++...|++++|.++++++.+.. +.+..++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 766 5666677777777777766666666666532 344456666666666666666666666666432 3345555
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhcC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHG 392 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 392 (588)
..+...|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|..++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 566666666666666666666655542 1234455555555555555555555555543 124455555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc---CCCCC--hHHHHHHHHHHHhcCChHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSPK--LKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~ 467 (588)
++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 5555555555555432 3344555555555555555555555555554421 22343 4455555555555555555
Q ss_pred HHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 468 AEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 468 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++.++..++.+|
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 555555542 122 4455555555555555555555555555555555555555555444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-39 Score=336.13 Aligned_cols=479 Identities=11% Similarity=-0.013 Sum_probs=396.1
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHH
Q 007818 54 LETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133 (588)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 133 (588)
...|....+...+..+. .++...|+.++..+.+.|++++|..+++++.+.. |+..++..++.+|.+.|++++|
T Consensus 64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHH
Confidence 34455555555554442 2567889999999999999999999999999654 7888999999999999999999
Q ss_pred HHHhccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHC---------------CCCCCcchHHHHHHHHhccCCh
Q 007818 134 CNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE---------------RVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
..+|+++ .+++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 9999987 5678999999999999999999999999954322 2234577899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHH---HHhcCCCC----cchHHHHHHHHHhcCCHHHHHHHh
Q 007818 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI---FDSMVNKT----VVSCTTMIVGYAKFGFLDIARKIF 269 (588)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~ 269 (588)
++|.+.|+.+.+.+.. +...+..+...+...+..+.+... +..+...+ ...|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999987533 455566565554443332222111 22222222 234555677788999999999999
Q ss_pred hhCCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 270 DDLPE--KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 270 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
+.+.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 677779999999999999999999999999875 4477889999999999999999999999998664 4467
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 8899999999999999999999998763 467799999999999999999999999999874 557889999999999
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhhC
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-------PMAAD--VVVWGALFFACRLHG 495 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~ 495 (588)
+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999974 3557899999999999999999999999987 33676 789999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++++|+..++++++..|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8e-27 Score=227.78 Aligned_cols=369 Identities=13% Similarity=0.065 Sum_probs=260.1
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChh
Q 007818 154 GFVRSGFPREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232 (588)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 232 (588)
.+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+.++|...++...+.. +.+...+..+...+.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 334445555555555444433 222 2223333344444555555555554444432 224444555555555555555
Q ss_pred HHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 233 SAEEIFDSMVN--K-TVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306 (588)
Q Consensus 233 ~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 306 (588)
+|...|+++.+ | +...|..+..++.+.|++++|.+.|+.+.. .+...+..+...+...|++++|.+.|+++.+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555554422 1 223444455555555555555555544432 22333666777788888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHH
Q 007818 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTA 383 (588)
Q Consensus 307 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 383 (588)
. +.+..++..+...+...|++++|...++++.+.++ .+...+..+...+...|++++|...+++..+ .+..++..
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 3 33567788888888888999999998888887653 3456778888888999999999988887652 35678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (588)
+...+...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|.+.++++.+. .+.+..++..++..+.+.|
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999998864 345678888999999999999999999999874 4567888999999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 464 LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 464 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
++++|.+.++++. ..| +...+..+...+.+.|++++|+..++++++..|+++.++..++.++...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999998873 344 577888888999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=219.66 Aligned_cols=352 Identities=14% Similarity=0.086 Sum_probs=306.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH
Q 007818 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFL 262 (588)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 262 (588)
+...+.+.|++++|.+.+..+.+..+ .+...+..+...+...|++++|...++...+ .+...|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 34567789999999999999988743 3567778888999999999999999988744 3567899999999999999
Q ss_pred HHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCChhHHHHHHHHH
Q 007818 263 DIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD-AVTTVHCLSACSQLGALDDGIWIHRFI 338 (588)
Q Consensus 263 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (588)
++|.+.|+.+.. .+...|..+..++...|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999998754 33445899999999999999999999999986 354 455667788888999999999999999
Q ss_pred HHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007818 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415 (588)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 415 (588)
.+.. +.+...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..+++..... +.+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8874 23567889999999999999999999998863 345678889999999999999999999998853 335678
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 493 (588)
+..+..++...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|.+.++++. .+++..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999873 34557889999999999999999999999873 34578899999999999
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.3e-27 Score=232.88 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=173.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCC---------hhHHHHHHHHHHHhCCCCcchHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA---------LDDGIWIHRFIEKENFNLNVVLG 350 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 350 (588)
++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 788899999999999999999999999999999999999999987654 57899999999999999999999
Q ss_pred HHHHHHhHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMP----ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999987 4799999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
|++++|.+++++|.+. +..|+..+|+.++..+...
T Consensus 189 g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 9999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.7e-27 Score=232.61 Aligned_cols=185 Identities=15% Similarity=0.204 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCC---------hhhHHHHHHHHHHhcCCCC
Q 007818 43 SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGL---------RFLGYEIFGHVLKLGFDVD 113 (588)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~ 113 (588)
...++.+|++|++.|+.++|+++|++|.+ .|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 34688899999999999999999999999 7899999999999999987654 6789999999999999999
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccC----CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 189 (588)
..+|+.+|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999875 5689999999999999999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 007818 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228 (588)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (588)
|++.|+.++|.+++++|.+.|..|+..||+.++..+...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.3e-24 Score=216.21 Aligned_cols=440 Identities=12% Similarity=-0.034 Sum_probs=249.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 007818 43 SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122 (588)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (588)
...|......+.+.|++++|+..|+++.. ..|+...+..+..++...|++++|...++.+.+.+ |.+...+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALE---LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh---cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34566778888888999999999998887 34788888888888888899999999999888865 345667777888
Q ss_pred HHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 123 VFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
++...|++++|...|++. .+++......++..+........+.+.+..+...+..|+...+..-.......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------ 155 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc------
Confidence 888888888888887763 33344444445544444333333333333333222222222111100000000
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 278 (588)
...|+.... ..+.......... ..+..+ +...
T Consensus 156 ----------~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~------------------------------ 188 (514)
T 2gw1_A 156 ----------ENLPSVTSM----ASFFGIFKPELTF---ANYDESNEADK------------------------------ 188 (514)
T ss_dssp -----------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHH------------------------------
T ss_pred ----------cCCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHH------------------------------
Confidence 011111111 0111110000000 000000 0111
Q ss_pred cHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhC
Q 007818 279 PWNAIIGGYVQ---AKRSKEALALFHEMQA-----TGIK--------PDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342 (588)
Q Consensus 279 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 342 (588)
+......+.. .|++++|...++++.+ .... .+..++..+...+...|+++.|...++.+.+..
T Consensus 189 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 189 -ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp -HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1111111221 4445555555554444 1101 122344445555555666666666666555554
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
.. ...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+
T Consensus 268 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 344 (514)
T 2gw1_A 268 PR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQL 344 (514)
T ss_dssp CC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHH
T ss_pred cc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHH
Confidence 33 55555666666666666666666665442 245566667777777777777777777776653 3345566677
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HhHHHHHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD----VVVWGALFFAC 491 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~ 491 (588)
...+...|++++|...++++.+. .+.+...+..++..|.+.|++++|.+.++++. ..++ ...+..+...+
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 77777777777777777777663 23345667777777777777777777776652 1122 23666667777
Q ss_pred Hh---hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 492 RL---HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 77 7777777777777777777777777777777777777777777777776654
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.9e-23 Score=209.76 Aligned_cols=430 Identities=10% Similarity=-0.024 Sum_probs=244.5
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHH
Q 007818 80 FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFV 156 (588)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~ 156 (588)
..+..+...+.+.|++++|...|+++.+.. |.++..+..+..+|...|++++|++.+++. .+.+..++..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 445666667777777777777777777765 345666777777777777777777777663 3445566666777777
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHHHHhcCChhHH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL--TLTVPLANALMDMYVKCGKLESA 234 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 234 (588)
..|++++|++.|+.+.. .|+.. ...+..+...+....+...++.+..... .+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 77777777777753321 22211 1112223333334455555555433210 00011112223334444444444
Q ss_pred HHHHHhcCCCCcc---hHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 235 EEIFDSMVNKTVV---SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311 (588)
Q Consensus 235 ~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 311 (588)
...+......+.. ....+...+...+ .......|++++|..+++++.+.. |+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~--p~ 234 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSAN--TV 234 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 4444433332221 1111111110000 000111235566666666666542 32
Q ss_pred --------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcch
Q 007818 312 --------AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLT 380 (588)
Q Consensus 312 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~ 380 (588)
..++..+...+...|+++.|...++.+.+.. |+...+..+...+...|++++|...++++.+ .+..+
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 312 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Confidence 1234444455566666777777776666653 2355566666666777777777777666542 34556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++..+.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 6677777777777777777777776643 334456667777777777777777777777763 2344566777777777
Q ss_pred hcCChHHHHHHHHhCC----CCC----CHhHHHHHHHHHHhh----------CCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 461 RSGLLEEAEQLIRSMP----MAA----DVVVWGALFFACRLH----------GNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..|++++|.+.++++. ..+ ....+......+... |++++|+..++++++..|+++.++..++
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7777777777777651 111 112233344455556 7778888888888877777777777788
Q ss_pred HHHHccCChHHHHHHHHHHHhcC
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+|.+.|++++|.+.++++.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888887776654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.1e-21 Score=195.50 Aligned_cols=339 Identities=12% Similarity=0.038 Sum_probs=234.4
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 223 (588)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+.. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 45567777777788888888888888877652 445667777777888888888888888888777433 5677788888
Q ss_pred HHHhcCChhHHHHHHHhcCCCCc------chHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHH
Q 007818 224 MYVKCGKLESAEEIFDSMVNKTV------VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 297 (588)
+|...|++++|.+.|+++.+.++ ..+..+...+...+ +..+...+...|++++|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHHH
Confidence 88888888888888888755433 33333333322111 233345566677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC
Q 007818 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377 (588)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 377 (588)
..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. ..+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------------~~~ 210 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------------------------------NDN 210 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------------------------------CSC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------------CCC
Confidence 7777777642 2344445555555555555555555555444332 123
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH------------HHHhccCCchHHHHHHHHHhhhhcC
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD-EITFLGI------------LSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
..+|..++..|...|++++|+..|+++... .|+ ...+..+ ...+.+.|++++|..+|+++.+.
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-- 286 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-- 286 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 445556666666666666666666666653 333 2233332 77888889999999999998875
Q ss_pred CCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 445 LSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 445 ~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
.|+ ...+..++.++.+.|++++|.+.++++. ..| +...|..++.+|...|++++|...+++++++.|+++.+
T Consensus 287 -~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 287 -EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred -CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 233 3477888999999999999999998863 334 67889999999999999999999999999999999999
Q ss_pred HHHHHH------------HHHccC-----ChHHHHHHHHHH
Q 007818 518 YVLLAN------------MYRDSN-----MWEEAGKVRKMM 541 (588)
Q Consensus 518 ~~~l~~------------~~~~~g-----~~~~A~~~~~~~ 541 (588)
+..++. .|...| +.+++.+.+++.
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999884 455555 566778887763
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-21 Score=196.69 Aligned_cols=455 Identities=10% Similarity=-0.074 Sum_probs=299.7
Q ss_pred chhhHHHHhhcccCCCChhhHHhhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHH
Q 007818 11 FAPSRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFK 87 (588)
Q Consensus 11 ~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 87 (588)
..+..+...|. +.|++++|...|+++. .|+..+|..+..++.+.|++++|++.|+++.+ ..|+ ...+..+..
T Consensus 7 ~~~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFF--RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE---LKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHH--HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc---cChHHHHHHHHHHH
Confidence 34555666777 8999999999999875 67999999999999999999999999999988 3354 568888999
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChhH
Q 007818 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----RNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 163 (588)
++...|++++|...|+.+.+.+. ++......++..+........+.+.+..+.. ++...++.-............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999998763 4444555555554443333333333322110 111111110000011111111
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHh---cCChhHHHHHHHh
Q 007818 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK---CGKLESAEEIFDS 240 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 240 (588)
...+...+......+.... ...+.+...+......+.. .|++++|...|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFAN--------------------------YDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSS--------------------------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHH--------------------------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 1111111111111111000 0001112223333333332 5556666555554
Q ss_pred cCC-----C--CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 241 MVN-----K--TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313 (588)
Q Consensus 241 ~~~-----~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 313 (588)
+.+ . ++..-.. ...+...+..+...+...|++++|...++++.+.. |+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKL---------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHHHHHTTTSTTCHHH---------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHhhhhhccCcccccc---------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 422 0 0000000 00011225556666777778888888888777754 3366
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 390 (588)
.+..+..++...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. ..+...+..+...+..
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 67777778888888888888888777654 2356677888888888889998888888764 2356778888889999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHh---cC
Q 007818 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGR---SG 463 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g 463 (588)
.|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+...-.++ ...+..++..+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999988753 445678888899999999999999999998765222222 3488889999999 99
Q ss_pred ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 464 LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 464 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
++++|.+.++++. ..| +...+..+...+...|++++|...+++++++.|+++..+..+.
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999998873 233 5778888899999999999999999999999999888877664
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.5e-21 Score=199.28 Aligned_cols=445 Identities=11% Similarity=-0.009 Sum_probs=318.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (588)
....|..+...+.+.|++++|++.|+++... .+.+...+..+..++...|++++|...++++.+.+ +.+...+..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 3456888999999999999999999999882 23356788889999999999999999999999976 45678899999
Q ss_pred HHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCC--CCCCcchHHHHHHHHhccCChhHH
Q 007818 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
.++...|++++|...|+.+ ..++......+..+...+....|...++++.... ..+........+..+....+.+.+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999999643 2223333334455566666788999999886531 011111112233334444444444
Q ss_pred HHHHHHHHHhCCCCChh-hHHHHHHHHHhc--------CChhHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCHHHHHH
Q 007818 200 REIHWYISESGLTLTVP-LANALMDMYVKC--------GKLESAEEIFDSMVNKTVV---SCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~ 267 (588)
...+..... ..+... ....+...+... |++++|..+++.+.+.++. .+..+..
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------- 244 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL------------- 244 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH-------------
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH-------------
Confidence 333221111 111111 223333332222 3666777777666543322 1221111
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
.+..+...+...|++++|...++.+.+. .|+...+..+...+...|+++.|...++.+.+... .+.
T Consensus 245 -----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 310 (537)
T 3fp2_A 245 -----------ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYP 310 (537)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCH
T ss_pred -----------HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCH
Confidence 1455667788899999999999999886 46678888899999999999999999999988753 356
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
.++..+...+...|++++|...++++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 7888999999999999999999998763 356789999999999999999999999998864 445678888999999
Q ss_pred cCCchHHHHHHHHHhhhhcCCCC----ChHHHHHHHHHHHhc----------CChHHHHHHHHhCC-CCC-CHhHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSP----KLKHYSCMVDLLGRS----------GLLEEAEQLIRSMP-MAA-DVVVWGALF 488 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 488 (588)
..|++++|...++++.+.....+ ....+..+...+.+. |++++|...++++. ..| +...+..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999876521111 123345566778888 99999999999873 334 677889999
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
..+...|++++|...+++++++.|.++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999987766543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=9e-21 Score=188.89 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=227.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHH
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGY 287 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 287 (588)
+...+..+...+.+.|++++|..+|+.+.+ .+...+..+..++...|++++|...|+.+.. .+...+..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 566778888888888888888888887643 2445566666666666666666666655433 2233355555666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDA----VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
...|++++|.+.|+++.+. .|+. ..+..+...+. ...+..+...+...|++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcCCH
Confidence 6666666666666665553 2322 22222222210 01122345567888999
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 364 AKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 364 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
++|...|+++.+ .+...+..++.+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988763 466788899999999999999999999998763 5567899999999999999999999999998
Q ss_pred hhcCCCCChHHHHHH------------HHHHHhcCChHHHHHHHHhCC-CCCC-----HhHHHHHHHHHHhhCCHHHHHH
Q 007818 441 SIFRLSPKLKHYSCM------------VDLLGRSGLLEEAEQLIRSMP-MAAD-----VVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
.. .+.+...+..+ +..+.+.|++++|.+.|+++. ..|+ ...+..++..+.+.|++++|+.
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 74 23345555444 888999999999999999873 3344 4477888888999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998754
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=7.9e-19 Score=169.02 Aligned_cols=303 Identities=12% Similarity=0.067 Sum_probs=191.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHH
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGY 287 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 287 (588)
++..+..+...+...|++++|...|+.+.+ .++..+..+...+...|++++|...++.+.. .+...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345667778888888888888888887743 2344555666666666666666666665432 2233355566666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 288 VQAKRSKEALALFHEMQATGIKP---D-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
...|++++|...++++.+. .| + ...+..+.... ....+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 6666666666666666553 23 1 11121111000 000112234566677777
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 364 AKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 364 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
++|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777766542 345566677777777777777777777777653 4455667777777777777777777777777
Q ss_pred hhcCCCCChHHHH------------HHHHHHHhcCChHHHHHHHHhCC-CCCC-H----hHHHHHHHHHHhhCCHHHHHH
Q 007818 441 SIFRLSPKLKHYS------------CMVDLLGRSGLLEEAEQLIRSMP-MAAD-V----VVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 441 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~~~~~~A~~ 502 (588)
+. .+.+...+. .++..+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 63 122233222 22556777888888888877652 2232 2 224446666777888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888887764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.7e-18 Score=166.73 Aligned_cols=321 Identities=11% Similarity=-0.011 Sum_probs=238.7
Q ss_pred cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHH
Q 007818 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGY 256 (588)
Q Consensus 180 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 256 (588)
...+..+...+...|++++|...++.+.+... .+...+..+..++...|++++|...++++.+ .+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45677788899999999999999999998744 3678899999999999999999999999854 3567888999999
Q ss_pred HhcCCHHHHHHHhhhCCCCCc---cc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhH
Q 007818 257 AKFGFLDIARKIFDDLPEKYV---VP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330 (588)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 330 (588)
...|++++|...|+.+...++ .. +..+...+ . ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHH
Confidence 999999999999998876554 22 22221100 0 0112233344555566666
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
|...++.+.+... .+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+++..+.
T Consensus 139 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666555432 2445566677777777777777777776553 34567777788888888888888888887775
Q ss_pred CCCCCHHHHH------------HHHHHhccCCchHHHHHHHHHhhhhcCCCCCh----HHHHHHHHHHHhcCChHHHHHH
Q 007818 408 GLMPDEITFL------------GILSACCHGGLVDEGRKYFAQMSSIFRLSPKL----KHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 408 ~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
. +.+...+. .+...+.+.|++++|...++++.+. . +.+. ..+..+...+...|++++|.+.
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3 22333322 2366688899999999999999875 2 2233 3355678899999999999999
Q ss_pred HHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 472 IRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 472 ~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
++++. ..| +...+..+...+...|++++|...+++++++.|+++.++..+..+....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99873 344 6788999999999999999999999999999999999988888776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.9e-18 Score=163.00 Aligned_cols=250 Identities=13% Similarity=0.066 Sum_probs=175.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
+..++.++...|++++|...++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+..++.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3344444555555666666666555542 223445555555555566 5666666666555443 223455666677777
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHH
Q 007818 359 KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 435 (588)
..|++++|...++++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777766552 245566677788888888888888888887763 44567788888888888888888888
Q ss_pred HHHhhhhcC-------CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 436 FAQMSSIFR-------LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 436 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
++++.+... .+.....+..++..|...|++++|.+.++++. ..| +...+..+...+...|++++|...+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888876421 13346788888999999999999999988763 233 566788888888899999999999999
Q ss_pred HhccCCCCCchHHHHHHHH-HccCChH
Q 007818 507 LLELDPQDSGIYVLLANMY-RDSNMWE 532 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~-~~~g~~~ 532 (588)
+++..|+++.++..++.++ ...|+.+
T Consensus 296 al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999988 4566654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.3e-18 Score=162.57 Aligned_cols=266 Identities=12% Similarity=-0.018 Sum_probs=230.0
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 007818 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354 (588)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (588)
.++..+..++..+...|++++|.++++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455567888888999999999999999998864 3455566677888899999999999999998875 33677888899
Q ss_pred HHhHhcC-ChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 355 DMYAKCG-NIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 355 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
..+...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999998864 445667777999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCCHhHHHHHHHHHHhhCCHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-----------AADVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 499 (588)
+|...++++.+ ..+.+...+..++..+...|++++|.+.++++.. +.....+..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 4455688899999999999999999999987620 2345688899999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987654
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=5.2e-17 Score=163.10 Aligned_cols=377 Identities=11% Similarity=0.011 Sum_probs=260.2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh----CCChhHHHHHhccCC-CCCcccHHHHHHHHHh----CCChhHHHHHHH
Q 007818 99 YEIFGHVLKLGFDVDMYVHNAVIHVFVS----CGDLGLACNVFDESC-VRNLVSWNSLINGFVR----SGFPREAIRLFR 169 (588)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 169 (588)
...+....+. .++..+..+...|.. .+++++|...|++.. ..+..++..|...|.. .+++++|.+.|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4444444443 355666666666666 677777777776532 2355566666666666 677777777777
Q ss_pred HhHHCCCCCCcchHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHh----cCChhHHHHHHHhc
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQ----LEDLNLGREIHWYISESGLTLTVPLANALMDMYVK----CGKLESAEEIFDSM 241 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 241 (588)
+..+.| +...+..+...+.. .++.++|...++...+.| +...+..+...|.. .+++++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 766643 34445555555555 566677777776666654 34455555555555 55566666655544
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ----AKRSKEALALFHEMQATGIKPDAVTTVH 317 (588)
Q Consensus 242 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 317 (588)
.+. .++..+..+...|.. .++.++|.+.|++..+.| +...+..
T Consensus 178 ~~~------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 178 AEQ------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHT------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHC------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 221 223335555556665 677888888888877754 4445555
Q ss_pred HHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh----cCChhHHHHHhccCCC-CCcchHHHHHHHH
Q 007818 318 CLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK----CGNIAKALQVFHEMPE-RNSLTYTAIIGGL 388 (588)
Q Consensus 318 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 388 (588)
+...+.. .+++++|..+++...+.+ +...+..+..+|.. .+++++|...|++..+ .++..+..+...|
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555553 678888888888777654 34555666677766 7888899888888764 3566777788888
Q ss_pred Hhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC---chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 389 ALH-----GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 389 ~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
... +++++|+..|++..+.| +...+..+...+...| ++++|.++|++..+. .++..+..|...|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 777 89999999999988865 4456666776666656 788999999999874 46778888888888
Q ss_pred h----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHc
Q 007818 461 R----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQ---DSGIYVLLANMYRD 527 (588)
Q Consensus 461 ~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 527 (588)
. .+++++|.++|++.....++..+..+...+.. .+++++|...++++.+.+|+ ++.+...++.++..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8 88999999999987544567788888888887 78999999999999999854 77777777766553
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.5e-18 Score=167.79 Aligned_cols=261 Identities=13% Similarity=-0.003 Sum_probs=201.6
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 007818 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357 (588)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (588)
..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346667777777777777777777777653 3455666677777777777777777777776664 23556667777777
Q ss_pred HhcCChhHHHHHhccCCC--C-CcchHHH---------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 007818 358 AKCGNIAKALQVFHEMPE--R-NSLTYTA---------------IIGGLALHGKALDAISYFSEMIGVGLMP-DEITFLG 418 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 418 (588)
...|++++|...++++.+ | +...+.. .+..+...|++++|+..++++.+..... +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 777777777777776542 1 1111111 1333348899999999999998863211 4788999
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 496 (588)
+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. ..| +...+..+...+...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999874 34567889999999999999999999999873 334 67789999999999999
Q ss_pred HHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 497 VSIGERAAMKLLELDPQD-----------SGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+++|...+++++++.|++ +.+|..++.+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999999887 7899999999999999999999887543
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=3.6e-15 Score=156.74 Aligned_cols=413 Identities=11% Similarity=0.058 Sum_probs=292.7
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHHhc--CCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhC
Q 007818 81 TYPLLFKVCASLGLRFLGYEIFGHVLKLG--FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158 (588)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (588)
--...+++|...|.+.++.++++++.-.+ +..+....+.++....+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 34556778888888888888888888432 113345566666666555 4456665555544222 44567778888
Q ss_pred CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh-ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 007818 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACA-QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 237 (588)
|.+++|..+|++.. .+...+..+. ..+++++|.++.+.. -++.+|..+..++...|++++|.+.
T Consensus 1063 glyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999988852 1112222222 667788888887754 2577888889999999999999988
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 238 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
|.+. .|...|..++.++.+.|++++|.+.|....+.. +...+.++.+|++.++++..... .. .|+...+
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~ 1198 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHI 1198 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHH
Confidence 8664 667778888888999999999999887655432 22345688888888887753333 22 3566677
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (588)
..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHH
Confidence 77888888999999999988764 36788888899999999999998877 45678888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc--CChHHHHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS--GLLEEAEQLIR 473 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 473 (588)
.|...... +..++..+..++..|.+.|.+++|+.+++..... . +-....|+.|..+|.+- ++..++.++|.
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-e-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88776553 3445666778888899999999999999888753 2 33456677777777654 46666666665
Q ss_pred hC-CCCC------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhc------------cCCCCCchHHHHHHHHHccC-----
Q 007818 474 SM-PMAA------DVVVWGALFFACRLHGNVSIGERAAMKLLE------------LDPQDSGIYVLLANMYRDSN----- 529 (588)
Q Consensus 474 ~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g----- 529 (588)
.- ..+| +...|..+...|.+.|+++.|.....+-.. ..+.|+..|...+..|....
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~ln 1420 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLN 1420 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHH
Confidence 43 2222 466788888889999999988844333322 24567777777777777666
Q ss_pred ----------ChHHHHHHHH
Q 007818 530 ----------MWEEAGKVRK 539 (588)
Q Consensus 530 ----------~~~~A~~~~~ 539 (588)
+++.+.+++.
T Consensus 1421 dLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1421 DLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhhhcCChHHHHHHHH
Confidence 7777776666
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.8e-16 Score=157.77 Aligned_cols=353 Identities=12% Similarity=-0.001 Sum_probs=263.6
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCC
Q 007818 143 RNLVSWNSLINGFVR----SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ----LEDLNLGREIHWYISESGLTLT 214 (588)
Q Consensus 143 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 214 (588)
.+..++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .++.++|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355555555555555 566666666666665543 33445555555554 556666666666655543 3
Q ss_pred hhhHHHHHHHHHh----cCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHh-
Q 007818 215 VPLANALMDMYVK----CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ- 289 (588)
Q Consensus 215 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~- 289 (588)
+..+..|...|.. .+++++|...|++..+. .++..+..+...|..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------------------------------GRDSGQQSMGDAYFEG 160 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHcC
Confidence 3444445555555 45555555555443221 223345666666766
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh---
Q 007818 290 ---AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK--- 359 (588)
Q Consensus 290 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 359 (588)
.++.++|++.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 788999999999998875 56677777777776 899999999999998876 45667778888876
Q ss_pred -cCChhHHHHHhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-----Cc
Q 007818 360 -CGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-----GL 428 (588)
Q Consensus 360 -~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~ 428 (588)
.+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 7899999999998765 466777888888887 899999999999998765 455666777777766 89
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG---LLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGE 501 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 501 (588)
+++|..++++..+. .+...+..+...|...| ++++|.++|++.....++..+..+...+.. .+++++|.
T Consensus 312 ~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999999999875 34567788888888767 889999999988545678888889888888 89999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcCC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 546 (588)
..++++.+.+ ++.++..|+.+|.. .+++++|.+.|++..+.+.
T Consensus 388 ~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 388 IWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999864 58899999999998 8999999999999998774
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.4e-15 Score=159.65 Aligned_cols=353 Identities=13% Similarity=0.087 Sum_probs=275.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCC--CCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERV--EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 221 (588)
++.--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++...+... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 444456678889999999999999999884321 01223444566666555 556666666555422 13457
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 007818 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301 (588)
Q Consensus 222 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (588)
...+...|.+++|..+|++.... ....+.+ +-..+++++|.++.+++ ..+.+|..+..++...|++++|+..|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88889999999999999997422 1112222 23788999999999877 346679999999999999999999996
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchH
Q 007818 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381 (588)
Q Consensus 302 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (588)
+. -|...|..++.++.+.|+++++.+.+....+.. +++...+.++.+|.+.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 53 467788899999999999999999999888765 34444456999999999999755554 35566778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..++..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh
Confidence 88999999999999999999984 379999999999999999999998873 45889999999999
Q ss_pred cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc--CChHHHHHHHH
Q 007818 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS--NMWEEAGKVRK 539 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 539 (588)
.|++..|......+ ..++..+..++..|.+.|.+++|+.+++.++.++|.+...+..|+.+|.+. ++..++.++|.
T Consensus 1263 ~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999988754 345556668888899999999999999999999999999998888888764 45555555554
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-17 Score=157.36 Aligned_cols=300 Identities=14% Similarity=0.108 Sum_probs=112.8
Q ss_pred CchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 007818 10 GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89 (588)
Q Consensus 10 ~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (588)
..+.+.||. +.|++++|...++++++| .+|+.++.++.+.|++++|++.|.+. +|..+|..++.++
T Consensus 6 ~~a~~~ll~-----~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~a 71 (449)
T 1b89_A 6 TSAVQVLIE-----HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-----HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHH
Confidence 344444543 567899999999999666 49999999999999999999999643 5777999999999
Q ss_pred HccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 007818 90 ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169 (588)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (588)
...|++++|...++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988888774 35678899999999999999999988864 677799999999999999999999999
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchH
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 249 (588)
.+ ..|..++.++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l 210 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL 210 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH
Confidence 76 36888888888888888888888776 267788888888888888888866655543 333334
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC
Q 007818 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326 (588)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 326 (588)
..++..|.+.|.+++|..+++.....+... |+-+.-.|++- ++++..+.++....+ . -...++++|.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~---i---ni~k~~~~~~--- 280 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---V---NIPKVLRAAE--- 280 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT---S---CHHHHHHHHH---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH---h---cCcHHHHHHH---
Confidence 445566666666666666666554433222 44444444433 222222222221111 0 1112222222
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccC
Q 007818 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (588)
+..+|..++..|...++++.|....-+-
T Consensus 281 -------------------~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 281 -------------------QAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp -------------------TTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred -------------------HHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 3566777888888888888877655443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=8.1e-16 Score=156.06 Aligned_cols=211 Identities=9% Similarity=-0.035 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHhHh-------cCChh-------HHHHHhccCCC---C-CcchHHHHHHHHHhc
Q 007818 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAK-------CGNIA-------KALQVFHEMPE---R-NSLTYTAIIGGLALH 391 (588)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 391 (588)
.+..++++..... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6667787777663 3356777777777765 68877 89999988763 3 466788888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH-HHhcCChHHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL-LGRSGLLEEA 468 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 468 (588)
|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+. .+.+...+...+.. +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999985 5542 47888888888899999999999999863 22334444433332 3468999999
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 469 EQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG----IYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 469 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.++|++. ...| +...|..++..+.+.|+.++|..+++++++..|.+|. .|..++......|+.+.+.++.+++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999976 2334 5778888888888999999999999999998877665 78888888888999999999999987
Q ss_pred hcC
Q 007818 543 ERG 545 (588)
Q Consensus 543 ~~~ 545 (588)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=6.3e-16 Score=156.90 Aligned_cols=404 Identities=9% Similarity=0.025 Sum_probs=248.5
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 007818 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178 (588)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (588)
++..++.. |-+...|..++.. .+.|++++|..+|++. .+.+...|..++..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 45555544 4577889999984 7899999999999985 3446678999999999999999999999999876 46
Q ss_pred CcchHHHHHHHH-hccCChhHHHH----HHHHHHHh-CCCC-ChhhHHHHHHHHHh---------cCChhHHHHHHHhcC
Q 007818 179 DEVTMIGMVSAC-AQLEDLNLGRE----IHWYISES-GLTL-TVPLANALMDMYVK---------CGKLESAEEIFDSMV 242 (588)
Q Consensus 179 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 242 (588)
+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666655433 34677777665 66666654 5544 45677777776655 688999999999886
Q ss_pred CC-Cc---chHHHHHHHH-------------HhcCCHHHHHHHhhh-------CC------CCC--------cccHHHHH
Q 007818 243 NK-TV---VSCTTMIVGY-------------AKFGFLDIARKIFDD-------LP------EKY--------VVPWNAII 284 (588)
Q Consensus 243 ~~-~~---~~~~~ll~~~-------------~~~~~~~~a~~~~~~-------~~------~~~--------~~~~~~l~ 284 (588)
+. .. ..|....... .+.+++..|..++.. +. .++ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 62 11 2232222211 022344555544432 11 111 01233333
Q ss_pred HHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc-------cCChh-------HHHHHHHHHHHhC
Q 007818 285 GGYVQA----KRS----KEALALFHEMQATGIKPDAVTTVHCLSACSQ-------LGALD-------DGIWIHRFIEKEN 342 (588)
Q Consensus 285 ~~~~~~----~~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~ 342 (588)
...... ++. +++..+|++..... +-+...|......+.. .|+++ .|..+++...+.-
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 222221 122 35666777766642 3345555555555543 56665 6677776666521
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CC-c-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-S-LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 418 (588)
.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|+.++|..+|++..+.. +.+...+..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHH
Confidence 223456666777777777777777777776552 22 2 356666666667777777777777776642 222223322
Q ss_pred HHHH-hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--HhHHHHHHHHH
Q 007818 419 ILSA-CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD--VVVWGALFFAC 491 (588)
Q Consensus 419 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~~l~~~~ 491 (588)
.... +...|++++|..+|+...+. .+.++..|..++..+.+.|+.++|..+|+++. ..|+ ...|...+...
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2222 23467777777777777664 23346677777777777777777777777652 1221 33566666666
Q ss_pred HhhCCHHHHHHHHHHHhccCCC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...|+.+.+..+..++.+..|+
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCch
Confidence 6677777777777777777774
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.2e-16 Score=147.84 Aligned_cols=240 Identities=13% Similarity=0.041 Sum_probs=177.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-cchHHHHHHHHhHhcC
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAKCG 361 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 361 (588)
+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34555556666665554433 124455556666666666666677777776666655433 3455666778889999
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF---LGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 557778899999999999999999999999886 4554321 2233445567999999999999
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHH-HHHHHHHHhccCCCCC
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSI-GERAAMKLLELDPQDS 515 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~ 515 (588)
+.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++.++..++..+...|+.++ +.+++++++++.|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9984 5677889999999999999999999999986 3445 67788899988889998875 6789999999999988
Q ss_pred chHHHHHHHHHccCChHHHHH
Q 007818 516 GIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~ 536 (588)
.+.. ...+.+.++++..
T Consensus 270 ~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 270 FIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHH----HHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHH
Confidence 7654 3444455555443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.1e-17 Score=161.39 Aligned_cols=260 Identities=10% Similarity=-0.079 Sum_probs=210.4
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (588)
...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3448888888889999999999999988763 4467788888888899999999999998888775 3356778888899
Q ss_pred hHhcCChhHHHHHhccCCCC---C----------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPER---N----------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PDEITFLGILSA 422 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~---~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~ 422 (588)
|...|++++|...++++.+. + ...+..+...+...|++++|+..++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999887632 1 223344578899999999999999999886421 157889999999
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A 500 (588)
+...|++++|...++++.+. .+.+..++..++.+|...|++++|.+.++++. ..| +...+..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999884 35568899999999999999999999999873 344 578899999999999999999
Q ss_pred HHHHHHHhccCCC------------CCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 501 ERAAMKLLELDPQ------------DSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 501 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
...+++++++.|+ +..+|..++.++...|+.+.|.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 367899999999999999999887765
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.3e-17 Score=153.55 Aligned_cols=347 Identities=13% Similarity=0.065 Sum_probs=118.5
Q ss_pred hCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHH
Q 007818 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 205 (588)
+.|++++|.+.+++...| ..|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567788888888887544 4788888888888888888888854 25666788888888888888888887766
Q ss_pred HHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHH
Q 007818 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285 (588)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 285 (588)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 6654 33466677788888888888777766642 44456666666666666666666666654 24666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
++.+.|++++|.+.++.+ .+..+|..++.+|. ..|+++.
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv-----------------------------------~~~ef~l 195 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV-----------------------------------DGKEFRL 195 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH-----------------------------------HTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHH-----------------------------------HcCcHHH
Confidence 666666666666666554 13444444444444 4444444
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 366 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
|......+. ..+.-...++..|.+.|++++|..+++...... +-....|+.+.-.+++- .+++..+.++.....-++
T Consensus 196 A~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 196 AQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 272 (449)
T ss_dssp HHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcC
Confidence 444333332 222223345666666777777777777666443 33334455554444433 233333333332222244
Q ss_pred CC------ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 446 SP------KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 446 ~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+| +...|..++-.|...++++.|...+-+-+ ..-+...+. ....+..+.+--.+...=.++.. |..+
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~---~~~~kv~n~elyYkai~fyl~~~---p~~l 346 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK---DIITKVANVELYYRAIQFYLEFK---PLLL 346 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHH---HHHHHCSSTHHHHHHHHHHHHHC---GGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHH---HHHhchhHHHHHHHHHHHHHhcC---HHHH
Confidence 44 35567777888888888888777665542 212222222 22233334332222222222222 3345
Q ss_pred HHHHHHHHccCChHHHHHHHHH
Q 007818 519 VLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
+.|..++...=+...+.+++++
T Consensus 347 ~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 347 NDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHH
Confidence 5555555444455544444443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=3.4e-17 Score=155.31 Aligned_cols=260 Identities=7% Similarity=-0.067 Sum_probs=206.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
.+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 36667777778888888888888877753 3356667777777888888888888888777764 235566777788888
Q ss_pred hcCChhHHHHHhccCCCC---CcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 359 KCGNIAKALQVFHEMPER---NSLTYTAI--------------IG-GLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
..|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 888888888888776532 22333332 22 3777889999999999998864 44678899999
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVS 498 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 498 (588)
..+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. ..| +...+..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999874 34567889999999999999999999999863 334 5778889999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 499 IGERAAMKLLELDPQ------------DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+|...++++++..|. ++.++..++.++.+.|++++|.+++++..+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999998 788999999999999999999999886543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=2e-16 Score=158.51 Aligned_cols=370 Identities=12% Similarity=-0.046 Sum_probs=196.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHC-----C---CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC----
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLE-----R---VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL---- 211 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 211 (588)
....||.+...+...|++++|++.|++..+. + -+....+|..+...|...|++++|...++.+.+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888888888888888876431 1 122334677777788888888888888777665310
Q ss_pred --C-CChhhHHHHHHHHHhc--CChhHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHH
Q 007818 212 --T-LTVPLANALMDMYVKC--GKLESAEEIFDSMVN--K-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283 (588)
Q Consensus 212 --~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 283 (588)
. ....++..+..++... +++++|...|++..+ | ++..+..+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~-------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY-------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------
Confidence 1 1233444444444443 457777777776533 2 2222322222211
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----cccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC----SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
.+...++.++|++.+++..+.. +.+...+..+...+ ...++.++|...++...... +.+..++..+...|..
T Consensus 184 --~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 184 --RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp --HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred --HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 1222334444444444444421 11222222222221 12234444555554444432 1233334444555555
Q ss_pred cCChhHHHHHhccCCC--C-CcchHHHHHHHHH-------------------hcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007818 360 CGNIAKALQVFHEMPE--R-NSLTYTAIIGGLA-------------------LHGKALDAISYFSEMIGVGLMPDEITFL 417 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 417 (588)
.|++++|...+++..+ | +..++..+...|. ..+.++.|...++...+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 5555555555544432 1 2223333333322 1233567888888877653 34455777
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcCCCCCh--HHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHh
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKL--KHYSCMVD-LLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRL 493 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 493 (588)
.+...+...|++++|...|+++.+. ...+.. ..+..+.. .+...|++++|++.|++. ...|+......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------- 410 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------- 410 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 8888899999999999999998864 322221 12333333 235778999999998875 45565433222
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeE
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
....+..++++.++.+|+++.+|..|+.+|...|++++|++.|++..+.+.......+|
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 23456677888899999999999999999999999999999999998876544433333
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=2.2e-16 Score=152.47 Aligned_cols=286 Identities=12% Similarity=0.018 Sum_probs=174.8
Q ss_pred hCCChHHHHH-HHHHHHhcCCCCC--CcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 007818 55 ETGKMREAVD-LYKQMLRNGGTRP--DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131 (588)
Q Consensus 55 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (588)
-.|++++|++ .|++........| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7776544111112 34556677777778888888888888887754 345667777777788888888
Q ss_pred HHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHH---------------HHHHHhc
Q 007818 132 LACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV-TMIG---------------MVSACAQ 192 (588)
Q Consensus 132 ~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---------------ll~~~~~ 192 (588)
+|...|++ ..+.+..++..+...+...|++++|++.|+++.... |+.. .+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88887776 344566777788888888888888888888877653 2222 2211 1222336
Q ss_pred cCChhHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhh
Q 007818 193 LEDLNLGREIHWYISESGLTL-TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 271 (588)
.|++++|...++.+.+..... +..++..+...+...|++++|...|+++.+.+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------- 247 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-------------------------- 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------
Confidence 667777777777766653322 45566666666666666666666665542211
Q ss_pred CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC------
Q 007818 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL------ 345 (588)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 345 (588)
..+...|..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.....
T Consensus 248 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 248 --PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 1223335666666777777777777777766642 3345566667777777777777777776665543221
Q ss_pred ----cchHHHHHHHHhHhcCChhHHHHHhcc
Q 007818 346 ----NVVLGTALVDMYAKCGNIAKALQVFHE 372 (588)
Q Consensus 346 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (588)
...++..+..+|...|++++|..++++
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 145566677777777777777766653
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=9.1e-17 Score=148.55 Aligned_cols=247 Identities=9% Similarity=0.007 Sum_probs=200.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDA--VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|+..++. .-+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678899999988876544 34543 3445677899999999999986644 23556778888999999999
Q ss_pred ChhHHHHHhccCC----CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 362 NIAKALQVFHEMP----ER-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 362 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677788999999999999999987 467778999999999999999999999
Q ss_pred HHhhhhcCCCCChHHH---HHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 437 AQMSSIFRLSPKLKHY---SCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...+..+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 2553211 233444556699999999999883 34578889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHccCChHH-HHHHHHHHHhcC
Q 007818 512 PQDSGIYVLLANMYRDSNMWEE-AGKVRKMMEERG 545 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 545 (588)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578999987754
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.5e-16 Score=153.50 Aligned_cols=232 Identities=13% Similarity=-0.035 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGG 387 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 387 (588)
+...+..+...+.+.|++++|...++.+.+... .+...+..+..+|...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345588888899999999999999999988753 4678899999999999999999999998763 457789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDE-----------ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|.++++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457788999999999999999998622222688999999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
..|...|++++|.+.++++. .. .+..+|..+..++...|++++|+..++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999873 33 46889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 007818 535 GKVRKMMEERG 545 (588)
Q Consensus 535 ~~~~~~~~~~~ 545 (588)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997753
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.4e-14 Score=143.24 Aligned_cols=304 Identities=12% Similarity=0.021 Sum_probs=154.2
Q ss_pred CChhHHHHHHHHhHHCCCCCCc-chHHHHHHH---HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc----CC
Q 007818 159 GFPREAIRLFRDMQLERVEPDE-VTMIGMVSA---CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC----GK 230 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 230 (588)
+++++|++.|++..+. .|+. ..+..+... +...++.++|.+.++...+.... +..++..+...+... |+
T Consensus 152 ~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhH
Confidence 4567777777776654 3332 223222222 23345556666666666655322 334444444333332 33
Q ss_pred hhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310 (588)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 310 (588)
+++|.+.+++.... ...+...+..+...|...|++++|...+++..+.. +-
T Consensus 229 ~~~a~~~~~~al~~----------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 229 EGEGEKLVEEALEK----------------------------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp -CHHHHHHHHHHHH----------------------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHh----------------------------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 44444444433111 12233346677788888889999999999888753 22
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGG 387 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 387 (588)
+..++..+..++...+.. ..... . ..........+.++.|...++... ..+..++..+...
T Consensus 280 ~~~~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343 (472)
T ss_dssp CHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHH
Confidence 344444444443211000 00000 0 000011111223566777776654 3466788999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEI--TFLGILS-ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++..+. .|+........
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~-------- 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK-------- 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH--------
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH--------
Confidence 999999999999999998864333221 2222222 245789999999999998863 45433322222
Q ss_pred hHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 465 LEEAEQLIRSM-PM-AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 465 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..+.++++.. .. +.++.+|..+...+...|++++|+..++++++++|.+|.+...+|
T Consensus 413 -~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 -DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2233333332 22 336778999999999999999999999999999999888776655
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=8.3e-16 Score=135.75 Aligned_cols=196 Identities=13% Similarity=0.007 Sum_probs=155.3
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35666777888888999999999999988664 356678888899999999999999999988863 44566788888
Q ss_pred HHhccC-----------CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHH
Q 007818 421 SACCHG-----------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALF 488 (588)
Q Consensus 421 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 488 (588)
.++... |++++|+..+++..+. .+.+...+..+..+|...|++++|++.|+++. ...+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999974 24457888999999999999999999999872 126788899999
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.++...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998765
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.2e-15 Score=136.33 Aligned_cols=218 Identities=11% Similarity=-0.029 Sum_probs=159.0
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-C-------cchHHHH
Q 007818 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-N-------SLTYTAI 384 (588)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-------~~~~~~l 384 (588)
+..+...+...|++++|...++.+.+.. .+...+..+..++...|++++|...+++..+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444455555555555444444 3444555555555555555555555555442 1 1 3567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
...+...|++++|+..+++..+. .|+.. .+...|++++|...++.+.. ..+.+...+..++..+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 45533 34556788899999998886 333456778888899999999
Q ss_pred hHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 465 LEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 465 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+++|.+.++++. .+.+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.++++.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998873 233677888888899999999999999999999999999999999999999999999999999987
Q ss_pred hcC
Q 007818 543 ERG 545 (588)
Q Consensus 543 ~~~ 545 (588)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 653
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.3e-14 Score=135.71 Aligned_cols=278 Identities=11% Similarity=-0.025 Sum_probs=169.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (588)
+...+..+...+...|++++|+..|+++.+. .+.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 4456677777888888888888888887762 22344566667777777888888888888877754 23445555556
Q ss_pred HHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HH-HHhccCCh
Q 007818 122 HVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM-VS-ACAQLEDL 196 (588)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~-~~~~~~~~ 196 (588)
..+...|++++|...+++. .+.+...+..+... .|+......+ .. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 6666666666666555542 11122222221000 0011111111 11 25666777
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
++|...++.+.+.... +...+..+...+...|++++|.+.++++.+.+ ..+
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~ 205 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR----------------------------PDD 205 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTC
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------CCc
Confidence 7777777777766433 56667777777777777777777776653211 112
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-----------
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL----------- 345 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 345 (588)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.....
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 2335556666777777777777777776643 3345666777777777777777777777776654332
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+...+..+..++...|++++|..+++...
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667778888888888888888887654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.5e-15 Score=136.01 Aligned_cols=235 Identities=11% Similarity=-0.032 Sum_probs=193.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC--c----chHHHHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL--N----VVLGTAL 353 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l 353 (588)
|..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 6667788888999999999999988876 777888888888999999999999998887654321 1 5678888
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
...+...|++++|...|++..+.++. ...+...|++++|...++++.... +.+...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999887642222 345677788999999999998853 334557888889999999999999
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
..++++.+. .+.+...+..++..|...|++++|.+.++++. ..| +...+..+...+...|++++|...+++++++.
T Consensus 160 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 160 KAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999884 34568889999999999999999999999873 334 57788899999999999999999999999999
Q ss_pred ------CCCCchHHHHHHH
Q 007818 512 ------PQDSGIYVLLANM 524 (588)
Q Consensus 512 ------p~~~~~~~~l~~~ 524 (588)
|++..++..+..+
T Consensus 238 ~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 238 AEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTTTHHHHHHHHHHT
T ss_pred hhhcCCCchHHHHHHHHHh
Confidence 8777777766554
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.7e-14 Score=131.34 Aligned_cols=246 Identities=12% Similarity=0.007 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc--hHHHHHHHHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV--VLGTALVDMY 357 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 357 (588)
+......+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+.+..++. ..+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4445566667777777777777776642 223335666666677777777777777766663322221 2356677777
Q ss_pred HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHH
Q 007818 358 AKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 434 (588)
...|++++|...|++..+ .+..+|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776652 345677777777888888888888887777652 3344556556523334458888888
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCC------HhHHHHHHHHHHhhCCHHHHH
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGL---LEEAEQLIRSMP----MAAD------VVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~~~~~~A~ 501 (588)
.++++.+. .+.+...+..+...+...|+ +++|...++++. ..|+ ...+..+...+...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888764 23446677777777777777 666777776652 1233 246667777888899999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
..++++++++|+++.++..+.......+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999888888877665544
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=8.5e-14 Score=137.43 Aligned_cols=381 Identities=10% Similarity=0.003 Sum_probs=208.5
Q ss_pred HHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh---hHHHHHhccCCCCCcccHHHHHHHHHhCC--
Q 007818 85 LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL---GLACNVFDESCVRNLVSWNSLINGFVRSG-- 159 (588)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-- 159 (588)
+...+.+.|++++|...|+++.+.|. ...+..|...|...|+. ++|..+|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 45556677788888888888777652 23333444555556666 78888887755556667777766555544
Q ss_pred ---ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChh---HHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 160 ---FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN---LGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 160 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
++++|++.|++..+.|. ...+..+...|...+..+ .+.+.+......| ++.....+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67788888888877652 225556666665544433 3344444444333 23445556666666655443
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC
Q 007818 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK---RSKEALALFHEMQATGIKP 310 (588)
Q Consensus 234 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p 310 (588)
+. +.+..+++.....++..+..+...|...| +.++|++.|+...+.| .+
T Consensus 160 ~~---------------------------~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~ 211 (452)
T 3e4b_A 160 HL---------------------------DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV 211 (452)
T ss_dssp GH---------------------------HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS
T ss_pred CH---------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH
Confidence 32 22233333333344445555666666666 6677777777776665 33
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHH-H-
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG-L- 388 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~-~- 388 (588)
+...+..+...|... ....+++++|...|++....++..+..+... +
T Consensus 212 ~a~~~~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 212 TAQRVDSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYD 260 (452)
T ss_dssp CHHHHHHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 333333333333222 0011445555555555442244455555554 3
Q ss_pred -HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-----chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh-
Q 007818 389 -ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG-----LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR- 461 (588)
Q Consensus 389 -~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 461 (588)
...+++++|+..|++..+.| +...+..+...|. .| ++++|.++|++.. +-++.....|...|..
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRG 331 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCC
Confidence 34677788888888777765 4555555555555 34 7888888888776 2356667777777765
Q ss_pred ---cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HccCChH
Q 007818 462 ---SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVLLANMY--RDSNMWE 532 (588)
Q Consensus 462 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~ 532 (588)
..++++|.++|++.....+......+...|.. .++.++|...++++.+.++.+ +...+..+. ...++.+
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHH
Confidence 33888888888877544445555666666653 458889999999998877643 344444443 3345777
Q ss_pred HHHHHHHHHHhc
Q 007818 533 EAGKVRKMMEER 544 (588)
Q Consensus 533 ~A~~~~~~~~~~ 544 (588)
+|.++.++..+.
T Consensus 410 ~a~~~~~~~~~~ 421 (452)
T 3e4b_A 410 EGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887777554
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=4.8e-14 Score=139.22 Aligned_cols=302 Identities=13% Similarity=0.023 Sum_probs=196.5
Q ss_pred hHHHHHHHhcCCCCcchHHHHHHHHHhcC-----CHHHHHHHhhhCCCC-CcccHHHHHHHHHhcCCh---HHHHHHHHH
Q 007818 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFG-----FLDIARKIFDDLPEK-YVVPWNAIIGGYVQAKRS---KEALALFHE 302 (588)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---~~a~~~~~~ 302 (588)
++|...|++..+.++..+..+...+...+ +.++|...|+...++ +...+..|...|...+.. ..+.+.+..
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 44444444443333333333433233222 444555555544332 233466666666654433 335555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC---ChhHHHHHhccCCCC---
Q 007818 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG---NIAKALQVFHEMPER--- 376 (588)
Q Consensus 303 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~--- 376 (588)
....|. ......+...+...+.++.+......+.+.-...++..+..+..+|...| ++++|.+.|+...+.
T Consensus 135 a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 135 WQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 555542 33455556666666666665555444443333344557788888888899 889999999887643
Q ss_pred CcchHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--ccCCchHHHHHHHHHhhhhcCCCCCh
Q 007818 377 NSLTYTAIIGGLALH----GKALDAISYFSEMIGVGLMPDEITFLGILSA-C--CHGGLVDEGRKYFAQMSSIFRLSPKL 449 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~ 449 (588)
+...+..+...|... +++++|+..|++.. .| +...+..+... + ...+++++|.++|++..+. + +.
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~ 283 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QP 283 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 223336677777554 78999999999987 33 44455555555 3 5689999999999999875 3 67
Q ss_pred HHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 450 KHYSCMVDLLGRSG-----LLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 450 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
..+..|...|. .| ++++|.++|++.. ..++.....+...|.. ..++++|...++++.+. .++.+...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 77888888887 55 9999999999998 6678888888877765 34999999999999874 46788999
Q ss_pred HHHHHHc----cCChHHHHHHHHHHHhcCCcc
Q 007818 521 LANMYRD----SNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 521 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 548 (588)
|+.+|.. ..+.++|...++...+.|.+.
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999985 459999999999999888643
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.7e-14 Score=130.62 Aligned_cols=241 Identities=9% Similarity=-0.125 Sum_probs=188.7
Q ss_pred hcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 289 QAKRSKEALALFHEMQATGIK---PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
..|++++|+..++++.+.... .+..++..+...+...|++++|...++.+.+... .+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 456788999999988876321 1355677788888899999999999988888753 356788889999999999999
Q ss_pred HHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 366 ALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 366 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988763 36778999999999999999999999999885 455555555555667779999999999888874
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-AAD-----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
.+++...+ .++..+...++.++|.+.+++... .|. ...+..+...+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 34444444 477778888899999999988642 232 567888888999999999999999999999997754
Q ss_pred hHHHHHHHHHccCChHHHHHHH
Q 007818 517 IYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 466788899999998876
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.6e-16 Score=159.15 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=122.7
Q ss_pred CchhhHHHHhhcccCCCChhhHHhhcccCC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH
Q 007818 10 GFAPSRLIAFCAISESKNLDYCTKILFNVQ-------NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82 (588)
Q Consensus 10 ~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 82 (588)
..+||+||.+|+ +.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.. .|+.||..||
T Consensus 127 ~~TynaLIdglc--K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTY 203 (1134)
T 3spa_A 127 QQRLLAFFKCCL--LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHH
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHH
Confidence 357999999999 9999999999997643 79999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHccCCh-hhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHH
Q 007818 83 PLLFKVCASLGLR-FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-----NLVSWNSLINGFV 156 (588)
Q Consensus 83 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~ 156 (588)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++..+..++ ...+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998877766555555554443221 2334444555555
Q ss_pred hCC
Q 007818 157 RSG 159 (588)
Q Consensus 157 ~~~ 159 (588)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3e-13 Score=124.36 Aligned_cols=219 Identities=11% Similarity=-0.052 Sum_probs=149.0
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh----cCChhHHHHHhccCCC-CCcchHHHHHHHHHh-
Q 007818 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK----CGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL- 390 (588)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~- 390 (588)
.+...+...|++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .++..+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 33333444444444444444444321 22334444555555 5555555555555442 244556666666666
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh--
Q 007818 391 ---HGKALDAISYFSEMIGVGLMPDEITFLGILSACCH----GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-- 461 (588)
Q Consensus 391 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 461 (588)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+...|..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTS
T ss_pred CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCC
Confidence 777778888887777754 56677777777777 78888888888888774 3 45667777777777
Q ss_pred --cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc----cCCh
Q 007818 462 --SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD----SNMW 531 (588)
Q Consensus 462 --~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 531 (588)
.+++++|.+.+++.....+...+..+...+.. .+++++|+..++++++.+| +.++..++.+|.. .|++
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence 78888888888876433456677777777878 8888999999998888866 6788888999988 8899
Q ss_pred HHHHHHHHHHHhcCCc
Q 007818 532 EEAGKVRKMMEERGVE 547 (588)
Q Consensus 532 ~~A~~~~~~~~~~~~~ 547 (588)
++|.+.+++..+.+.+
T Consensus 239 ~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 239 KQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCH
Confidence 9999999988877643
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.4e-13 Score=124.89 Aligned_cols=197 Identities=9% Similarity=-0.080 Sum_probs=149.7
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455666667777777777777766542 345567777778888888888888888877753 34566777788888
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSP-KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A 500 (588)
...|++++|.++++++.+. +..| +...+..++..|...|++++|.+.++++. ..| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888762 2344 45677778888888888888888888762 233 567777888888888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888899999988888887654
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=155.77 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccC-------CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDES-------CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (588)
..+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 458999999999999999999999653 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 187 VSACAQLEDL-NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 187 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+ .++.++++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh
Confidence 9999999985 788999999999999999999998887665543 44444444
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=1.4e-13 Score=118.06 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
++..|..+...|...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678889999999999999999999988863 345678888999999999999999999999874 345577788888
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
..+...++++.|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998863 334 6778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 007818 535 GKVRKMMEERG 545 (588)
Q Consensus 535 ~~~~~~~~~~~ 545 (588)
++.++++.+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998764
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3.4e-14 Score=128.15 Aligned_cols=197 Identities=11% Similarity=0.102 Sum_probs=140.2
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 422 (588)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345556666777777888877777776643 345677777788888888888888888887753 4456677788888
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A 500 (588)
+...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++. . +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888774 34567778888888888888888888888763 2 23567777888888888889999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999888888888888888999999999999999988887654
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.9e-13 Score=125.64 Aligned_cols=229 Identities=10% Similarity=-0.039 Sum_probs=188.1
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcc----hHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSL----TYTAIIGG 387 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 387 (588)
.+......+...|+++.|...++.+.+... .+...+..+..+|...|++++|...+++..+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 455667778899999999999999988753 3555788899999999999999999988764 3333 38899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864 445678999999999999999999999999873 44557778888834445569999
Q ss_pred HHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHccCChHHH
Q 007818 468 AEQLIRSMP-MAA-DVVVWGALFFACRLHGN---VSIGERAAMKLLELD---PQD-----SGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 468 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 534 (588)
|.+.++++. ..| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999873 334 46777788888888888 888999999998876 432 25788899999999999999
Q ss_pred HHHHHHHHhcCC
Q 007818 535 GKVRKMMEERGV 546 (588)
Q Consensus 535 ~~~~~~~~~~~~ 546 (588)
.+.++++.+...
T Consensus 241 ~~~~~~al~~~p 252 (272)
T 3u4t_A 241 DAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCc
Confidence 999999987653
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.7e-13 Score=120.54 Aligned_cols=197 Identities=11% Similarity=-0.015 Sum_probs=147.9
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455566666666777777766665542 245567777777888888888888888877653 44566777788888
Q ss_pred ccC-CchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHH
Q 007818 424 CHG-GLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 424 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 499 (588)
... |++++|...++++.+. +..|+ ...+..++..+...|++++|.+.++++. ..| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 8888888888888762 23333 5677788888888888888888888762 233 46777888888888899999
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDP-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999988888 888888888888888899999988888886543
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=3.6e-13 Score=128.61 Aligned_cols=243 Identities=9% Similarity=0.040 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA-LDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
|..+...+...|++++|++.+++++... +-+...|..+..++...|+ +++|+..++.+.+.... +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 6777778888899999999999988853 3356667778888888886 99999999888887533 6677888888899
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-CCchHHH--
Q 007818 359 KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH-GGLVDEG-- 432 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-- 432 (588)
..|++++|...|+++.+ .+..+|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 99999999999988763 466788888889999999999999999998864 3456788888888887 5665777
Q ss_pred ---HHHHHHhhhhcCCCCChHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHhHHHHHHHHHHhhC--------C-H
Q 007818 433 ---RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG--LLEEAEQLIRSMPMAA-DVVVWGALFFACRLHG--------N-V 497 (588)
Q Consensus 433 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~--------~-~ 497 (588)
+..++++... .+-+...|..+..++...| ++++|.+.+.++...| +...+..++..+.+.| + +
T Consensus 257 ~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4778888763 2445778888888888888 6889998888875445 4567777777777763 2 5
Q ss_pred HHHHHHHHHH-hccCCCCCchHHHHHHHHHc
Q 007818 498 SIGERAAMKL-LELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 498 ~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 527 (588)
++|+.+++++ .+++|.....|..++..+..
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8899999999 89999888888888876654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=5.5e-14 Score=126.76 Aligned_cols=180 Identities=10% Similarity=0.072 Sum_probs=134.4
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444455555555555555555555432 245566777778888888888888888887753 44667788888889
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++. . +.+...+..+...+...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999998874 34567788889999999999999999998763 2 335778888999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
..++++++..|+++.++..++.+....|
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999888887776554433
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=9.5e-13 Score=119.38 Aligned_cols=204 Identities=13% Similarity=0.012 Sum_probs=150.7
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 390 (588)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+ .+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444555555666666666665555543 22345566666667777777777777766542 345667778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007818 391 HGKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
.|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..|...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999998888877333453 457777888889999999999999998874 2445788888999999999999999
Q ss_pred HHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 470 QLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 470 ~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
+.++++. .. .+...+..+...+...|++++|...++++++..|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9998863 33 456677888888899999999999999999999988765543
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.3e-12 Score=119.95 Aligned_cols=225 Identities=11% Similarity=-0.064 Sum_probs=183.9
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHH
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTA 352 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (588)
+..+..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344666777788888888888888888873 345566677777777 888999999998888776 5677778
Q ss_pred HHHHhHh----cCChhHHHHHhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 353 LVDMYAK----CGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 353 l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888888 8999999999887764 366778888888988 999999999999999865 566777777777
Q ss_pred cc----CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh--
Q 007818 424 CH----GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL-- 493 (588)
Q Consensus 424 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 493 (588)
.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 77 89999999999999875 356778889999999 99999999999987433347778888888888
Q ss_pred --hCCHHHHHHHHHHHhccCCCC
Q 007818 494 --HGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 494 --~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.+++++|...++++++.+|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999999854
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=3.7e-13 Score=118.69 Aligned_cols=194 Identities=13% Similarity=-0.004 Sum_probs=117.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (588)
++...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++.+.|++++|...++++.+.. |.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4555666667777777777777777777665 3333 4456666666667777777777777777654 234556666
Q ss_pred HHHHHHhC-----------CChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH
Q 007818 120 VIHVFVSC-----------GDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185 (588)
Q Consensus 120 l~~~~~~~-----------~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 185 (588)
+..++... |++++|+..|++. .+.+...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 66666666 6666666666652 33455666666677777777777777777776655 45566666
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
+..++...|++++|...++.+.+..+. +...+..+..++...|++++|...|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777777766332 5566666777777777777777766654
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=4.7e-13 Score=123.18 Aligned_cols=157 Identities=15% Similarity=0.006 Sum_probs=71.5
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhC
Q 007818 82 YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRS 158 (588)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~ 158 (588)
+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|++. .+.+...|..+...+...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 3344444444444444444444444432 123344444444444444444444444431 223344455555555555
Q ss_pred CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 007818 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 238 (588)
|++++|.+.|+++.+. .|+.......+..+...|+.++|...+........ ++...+ .++..+...++.++|...+
T Consensus 125 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHH
Confidence 5555555555555543 23333333333333444555555555555544421 122222 2444445555555555555
Q ss_pred HhcCC
Q 007818 239 DSMVN 243 (588)
Q Consensus 239 ~~~~~ 243 (588)
....+
T Consensus 201 ~~~~~ 205 (275)
T 1xnf_A 201 KADAT 205 (275)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 55544
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=4e-13 Score=128.33 Aligned_cols=227 Identities=10% Similarity=0.047 Sum_probs=192.0
Q ss_pred HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCC-hhHHHHHhccCCC---CCcchHHHHHHHH
Q 007818 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN-IAKALQVFHEMPE---RNSLTYTAIIGGL 388 (588)
Q Consensus 313 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 388 (588)
..+..+..++...|++++|+..++.+.+... -+...|..+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566677778889999999999999998753 356778889999999997 9999999999874 4667899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh-cCChHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEE 467 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 467 (588)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+. .+.+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999864 446778999999999999999999999999984 34568899999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHhHHHHHHHHHHhhC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC---------
Q 007818 468 A-----EQLIRSM-PMAA-DVVVWGALFFACRLHG--NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN--------- 529 (588)
Q Consensus 468 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 529 (588)
| ++.++++ ...| +...|..+...+...| ++++|+..+.++ +..|+++.++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777765 3455 5778888888888877 689999999998 999999999999999999875
Q ss_pred ChHHHHHHHHHH-Hhc
Q 007818 530 MWEEAGKVRKMM-EER 544 (588)
Q Consensus 530 ~~~~A~~~~~~~-~~~ 544 (588)
.+++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 359999999998 554
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=5.4e-11 Score=121.29 Aligned_cols=433 Identities=11% Similarity=0.045 Sum_probs=274.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC---hhHHHH
Q 007818 59 MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD---LGLACN 135 (588)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 135 (588)
..+.+..|++.... -+-|..+|..++..+.+.+.++.+..+++++... +|.....|...+..-.+.+. ++.+..
T Consensus 48 ~~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34445455555442 3456778888888888888888888899888875 46677788888888778888 888888
Q ss_pred HhccCC-----CCCcccHHHHHHHHHhCCCh--------hHHHHHHHHhHH-CCC-CCCc-chHHHHHHHHhc-------
Q 007818 136 VFDESC-----VRNLVSWNSLINGFVRSGFP--------REAIRLFRDMQL-ERV-EPDE-VTMIGMVSACAQ------- 192 (588)
Q Consensus 136 ~~~~~~-----~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~------- 192 (588)
+|++.. +|++..|...+....+.++. +.+.++|+.... .|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888732 26777777777666555543 234466666543 355 4543 344444443321
Q ss_pred --cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhh
Q 007818 193 --LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270 (588)
Q Consensus 193 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 270 (588)
.++.+.+..+|+.++......-..+|......-...+. ..+.+++.+. ...++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHH
Confidence 23456677777777642111112233222221111111 1122221110 001111222221
Q ss_pred -------hCCC---C-------------C------cccHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHHH
Q 007818 271 -------DLPE---K-------------Y------VVPWNAIIGGYVQAK-------RSKEALALFHEMQATGIKPDAVT 314 (588)
Q Consensus 271 -------~~~~---~-------------~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~ 314 (588)
.+.. . + ...|...+..--..+ ..+++..+|++.... ++-+...
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHH
Confidence 1111 0 0 011444444333322 124566778888775 3446667
Q ss_pred HHHHHHHHcccCChhHHH-HHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-------------CC---
Q 007818 315 TVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-------------RN--- 377 (588)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~--- 377 (588)
|...+.-+...|+.+.|. .+++...... +.+..++-..+....+.|+++.|.++|+.+.+ |+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 777777777888888996 9999888653 34566677788888899999999999988763 21
Q ss_pred ---------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-CchHHHHHHHHHhhhhcCCCC
Q 007818 378 ---------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-GLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 378 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 447 (588)
...|...+....+.|+.+.|..+|...++.-..+....|...+..-.+. ++.+.|..+|+...+. .+.
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~ 502 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTT
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCC
Confidence 2357777888888899999999999998861122344454443333333 5699999999999985 445
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-AA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
+...+...++.....|+.+.|+.+|++... .| ....|...+.--.+.|+.+.+..+.+++.+..|+++.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 667778889988899999999999998742 23 2456777777778899999999999999999997653
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.3e-13 Score=135.18 Aligned_cols=264 Identities=13% Similarity=0.003 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcccCChhHHHHHHHHHHHh----C-CCCcchHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDA----VTTVHCLSACSQLGALDDGIWIHRFIEKE----N-FNLNVVLG 350 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 350 (588)
+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|+++.|...+++..+. + .......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445566777788888888888877753 1122 35666777777888888888887766543 1 11234556
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCC---------CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPER---------NSLTYTAIIGGLALHGK-----------------ALDAISYFSEM 404 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 404 (588)
..+...|...|++++|...+++..+- ...++..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77778888888888888888776521 23467778888888888 88888888776
Q ss_pred HHC----CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 405 IGV----GLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 405 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.+. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 1236777888899999999999999988764211112 236788899999999999999999876
Q ss_pred C-----CC---CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 476 P-----MA---ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 476 ~-----~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
. .. .....+..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2 11 124577788888999999999999999998876542 347889999999999999999999998
Q ss_pred Hhc
Q 007818 542 EER 544 (588)
Q Consensus 542 ~~~ 544 (588)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.3e-12 Score=114.49 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=145.3
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 390 (588)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+ .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444455555555555555544442 12344555566666666666666666665542 345567777888888
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007818 391 H-GKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468 (588)
Q Consensus 391 ~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 468 (588)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888887333344 457778888889999999999999998874 344577888899999999999999
Q ss_pred HHHHHhCC-CC--CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 469 EQLIRSMP-MA--ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 469 ~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
.+.++++. .. .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99998762 22 3566666666677889999999999999999999887766554
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=3.3e-13 Score=131.97 Aligned_cols=262 Identities=13% Similarity=0.053 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHh----CCCC-cchHHH
Q 007818 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKE----NFNL-NVVLGT 351 (588)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 351 (588)
......+...|++++|...|++..+.+ +.+ ...+..+...+...|+++.|...++..... +..| ...++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344455555666666666666655542 112 134445555555666666666666554332 1111 133455
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPE-----RN----SLTYTAIIGGLALHGK--------------------ALDAISYFS 402 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 402 (588)
.+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+..++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 555666666666666666655442 11 2255556666666666 666666666
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 403 EMIGV----GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 403 ~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..++..|...|++++|.+.++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 54331 11111 124555666666677777777776666543111111 2355666666777777777777666
Q ss_pred hCC----CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHH
Q 007818 474 SMP----MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 474 ~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
+.. ..++ ..++..+...+...|++++|...++++++..+.. +.++..++.+|...|++++|.++++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 541 0111 3355566666667777777777777776654332 4456667777777777777777766
Q ss_pred HHHh
Q 007818 540 MMEE 543 (588)
Q Consensus 540 ~~~~ 543 (588)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=2.1e-13 Score=135.47 Aligned_cols=191 Identities=5% Similarity=-0.101 Sum_probs=158.1
Q ss_pred cchHHHHHHHHhHhcCCh-hHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNI-AKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 421 (588)
+...+..+...+...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344555556666666666 666666665542 24567788888888899999999999998885 577788888999
Q ss_pred HhccC---------CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc--------CChHHHHHHHHhCC-CCC----
Q 007818 422 ACCHG---------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS--------GLLEEAEQLIRSMP-MAA---- 479 (588)
Q Consensus 422 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~---- 479 (588)
++... |++++|...++++.+. .+.+...|..+..+|... |++++|.+.|+++. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999874 345588899999999988 99999999999873 345
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
+...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999999999999999999999999999999999999975543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=3.5e-13 Score=127.93 Aligned_cols=263 Identities=13% Similarity=0.034 Sum_probs=194.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHh----CCC-CcchHHH
Q 007818 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKE----NFN-LNVVLGT 351 (588)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 351 (588)
......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++...+. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344566777888888888888887753 222 245667777788888888888888766443 211 1245667
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPE-----RN----SLTYTAIIGGLALHGK--------------------ALDAISYFS 402 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 402 (588)
.+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 788888889999998888877652 12 2367778888888888 888988888
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 403 EMIGV----GLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 403 ~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+.... +..| ...++..+...+...|++++|...+++..+.....++ ...+..++..+...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 1111 1236777888899999999999999988754211122 3377888999999999999999998
Q ss_pred hCC----CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHH
Q 007818 474 SMP----MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 474 ~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
+.. ..++ ...+..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|.++++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 762 1112 4567778888999999999999999998876543 4478899999999999999999999
Q ss_pred HHHhc
Q 007818 540 MMEER 544 (588)
Q Consensus 540 ~~~~~ 544 (588)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=7.6e-13 Score=129.41 Aligned_cols=154 Identities=14% Similarity=0.021 Sum_probs=112.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----h
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD----EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----L 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 449 (588)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566777778888888888888887654210 122 236777888888999999999999887653211112 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC------CCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDP------QDS 515 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~ 515 (588)
.++..++..|...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567788889999999999999988762 1122 55777888889999999999999999987643 235
Q ss_pred chHHHHHHHHHccCChH
Q 007818 516 GIYVLLANMYRDSNMWE 532 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~ 532 (588)
.++..++.++...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56788888888888764
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=2.5e-12 Score=132.80 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=143.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
+..+|+.|...|.+.|++++|+..|++.++.. +-+...+..+..++.+.|++++|++.|+++.+. -+.+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34578888999999999999999999988853 334668888999999999999999999999874 234478899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
.+|.+.|++++|++.|+++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999886 3455 5778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007818 535 GKVRKMMEE 543 (588)
Q Consensus 535 ~~~~~~~~~ 543 (588)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988864
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3.8e-12 Score=109.12 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=138.4
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 422 (588)
+..+|..+...|...|++++|.+.|++..+ .+..+|..+..+|...|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677788888888888888888887653 356678888888999999999999999888753 4456677777888
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 500 (588)
+...++++.|...+.+.... .+.+...+..+...|.+.|++++|++.|++. ...| +...+..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998874 3456788889999999999999999999887 3344 677899999999999999999
Q ss_pred HHHHHHHhccCCCCC
Q 007818 501 ERAAMKLLELDPQDS 515 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~ 515 (588)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999653
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=7e-12 Score=107.42 Aligned_cols=163 Identities=17% Similarity=0.051 Sum_probs=120.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34445555666666666666666655432 334556666777777777777777777777663 234566777777777
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 460 GRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|.++.++..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888888877652 2335667777888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 007818 538 RKMMEERG 545 (588)
Q Consensus 538 ~~~~~~~~ 545 (588)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99987653
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=4.8e-11 Score=111.50 Aligned_cols=218 Identities=8% Similarity=-0.005 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-------ccCCh-------hHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 294 KEALALFHEMQATGIKPDAVTTVHCLSACS-------QLGAL-------DDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 294 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776642 334445555554443 23554 6677777666652112234466666667777
Q ss_pred cCChhHHHHHhccCCC--C-Ccc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-ccCCchHHHHH
Q 007818 360 CGNIAKALQVFHEMPE--R-NSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-CHGGLVDEGRK 434 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 434 (588)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766553 2 232 56666666677777777777777776643 23333443333222 12567777777
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAA--DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
+|++..+. .+.+...|..++..+.+.|++++|..+|+++. ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777663 23346666666777777777777777776652 133 24456666666666777777777777777
Q ss_pred ccCCCCC
Q 007818 509 ELDPQDS 515 (588)
Q Consensus 509 ~~~p~~~ 515 (588)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777644
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=4.6e-11 Score=115.68 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=112.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC------cchHHH
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGI-KPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL------NVVLGT 351 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 351 (588)
....+...|++++|...+++..+.-. .++ ..++..+...+...|+++.|...+++..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677888888888887765310 122 2345555666666666666666665554331110 112334
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhccC
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDE----ITFLGILSACCHG 426 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~ 426 (588)
.+..+|...|++++|...+ ++..+... .++. .++..+..+|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHF-------------------------------QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHH-------------------------------HHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 4444444555555554444 43332100 0111 2344445555555
Q ss_pred CchHHHHHHHHHhhhhc---CC-CCChHHHHHHHHHHHhcCChHHHHHHHHhCC------CCCC-HhHHHHHHHHHHhhC
Q 007818 427 GLVDEGRKYFAQMSSIF---RL-SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP------MAAD-VVVWGALFFACRLHG 495 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~~ 495 (588)
|++++|.+.+++..+.. +. +....++..++..|.+.|++++|.+.+++.. ..|. ...+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 55555555555544310 11 1223445555555555555555555555431 0111 112233444444555
Q ss_pred C---HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 496 N---VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 496 ~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+ +++|+..+++. ...|....++..++.+|...|++++|.+++++..+
T Consensus 318 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 45555555544 22233344566677777777777777777777654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=125.74 Aligned_cols=235 Identities=11% Similarity=0.032 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh------CCCCc
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQAT-------GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE------NFNLN 346 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 346 (588)
+..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++...+. +..|.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 666777777777888887777777652 11222334455555555666666666665554432 10010
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV------GLMP-DEITFLGI 419 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l 419 (588)
...++..+...+...|++++|...++++.+. +..| ....+..+
T Consensus 110 ------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 110 ------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 1223444555555555555555555555432 1112 22355666
Q ss_pred HHHhccCCchHHHHHHHHHhhhhc------CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC---
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIF------RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----------MAAD--- 480 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~--- 480 (588)
...+...|++++|.++++++.+.. ..+.....+..++..|...|++++|.+.++++. ..+.
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 667777777777777777765531 011124456667777777777777777776552 1111
Q ss_pred ----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 481 ----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 481 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
...+......+...+.+.++...++++....|.++.++..++.+|.+.|++++|.++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222223344556666777788888888888888999999999999999999999988653
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=1.2e-09 Score=111.41 Aligned_cols=212 Identities=9% Similarity=-0.050 Sum_probs=133.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHH-HHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC
Q 007818 245 TVVSCTTMIVGYAKFGFLDIAR-KIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG---------IKPD 311 (588)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~p~ 311 (588)
.+..|-..+..+...|+.++|. ++|+.... .+...|-..+...-..|++++|.++|+.+.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4455555555556666666664 66665433 122225556666667777777777777776531 0132
Q ss_pred ------------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhc-CChhHHHHHhccCCC---
Q 007818 312 ------------AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC-GNIAKALQVFHEMPE--- 375 (588)
Q Consensus 312 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--- 375 (588)
...|...+....+.|+.+.|..+|....+........+|...+..-.+. ++++.|..+|+...+
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 2346666777777788888888888887762122334444333333344 458888888887764
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH
Q 007818 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP--DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453 (588)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (588)
.+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+..+.+++.+.. |+.....
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~ 578 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLE 578 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHH
Confidence 345566677777777888889999998888764222 22467777777777888888999988888752 4434444
Q ss_pred HHHHHH
Q 007818 454 CMVDLL 459 (588)
Q Consensus 454 ~l~~~~ 459 (588)
.+++-|
T Consensus 579 ~f~~ry 584 (679)
T 4e6h_A 579 EFTNKY 584 (679)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 445544
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.5e-11 Score=109.44 Aligned_cols=165 Identities=9% Similarity=-0.056 Sum_probs=93.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (588)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444555555555555556555555555432244455545555555566666666666655542 22234455555555
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CH-------hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHc
Q 007818 459 LGRSGLLEEAEQLIRSMP-MAA-DV-------VVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRD 527 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~-~~~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 527 (588)
|...|++++|.+.+++.. ..| +. ..+..+...+...|++++|+..++++++.+|+ ++.++..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 666666666666555541 122 22 23444555555566666666666666666666 55666666666665
Q ss_pred cCCh---------------------------HHHHHHHHHHHhcC
Q 007818 528 SNMW---------------------------EEAGKVRKMMEERG 545 (588)
Q Consensus 528 ~g~~---------------------------~~A~~~~~~~~~~~ 545 (588)
.|+. ++|+..+++..+..
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5555 99999999988753
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=6.5e-12 Score=121.69 Aligned_cols=189 Identities=6% Similarity=-0.075 Sum_probs=143.3
Q ss_pred HHHHhHhcCChhHHHHHhccCCC-----C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-----HHHHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPE-----R----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD-----EITFL 417 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-----~~~~~ 417 (588)
....+...|++++|...+++..+ + ...++..+...|...|+++.|+..+++..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566777888888887776543 1 234677888888999999999999888765210 111 24788
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC------CC-C-CHhHHH
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP------MA-A-DVVVWG 485 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~-~~~~~~ 485 (588)
.+..+|...|++++|...++++.+...-.++ ..++..++.+|...|++++|.+.+++.. .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998764221122 2478889999999999999999998762 22 4 355788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccC-----CCCCchHHHHHHHHHccCC---hHHHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELD-----PQDSGIYVLLANMYRDSNM---WEEAGKVRKMM 541 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 541 (588)
.+...+...|++++|...+++++++. |.....+..++.+|...|+ +++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 88889999999999999999999874 3333346779999999999 77777777665
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=5.4e-12 Score=123.62 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=98.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----h
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD----EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----L 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 449 (588)
.++..+...+...|++++|+..+++..+... .++ ..++..+..++...|++++|...+++......-..+ .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566677778888888888888877655310 112 126777888888999999999998887654211111 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-M---AA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
..+..+...|...|++++|.+.+++.. . .+ ....+..+...+...|++++|...+++++++.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 667788889999999999999988762 1 01 2446777888889999999999999999988763
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=4.7e-10 Score=108.11 Aligned_cols=262 Identities=13% Similarity=-0.009 Sum_probs=175.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-c----chHHHHH
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAV----TTVHCLSACSQLGALDDGIWIHRFIEKENFNL-N----VVLGTAL 353 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 353 (588)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+++........ + ...+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345566788888888888777653222221 34455566677788888888887765432111 1 1234566
Q ss_pred HHHhHhcCChhHHHHHhccCCC-------C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPE-------R----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM--P--DEITFLG 418 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~~~ 418 (588)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7778888888888888876542 1 1234566777888899999999999887653211 1 1246677
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH-----HHHHHHHhcCChHHHHHHHHhCCC-CCC-----HhHHHHH
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS-----CMVDLLGRSGLLEEAEQLIRSMPM-AAD-----VVVWGAL 487 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l 487 (588)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++... .|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77888889999999999998875421111111222 233457789999999999988742 221 2245667
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
...+...|++++|...++++++..+.. ..++..++.++...|++++|.+.+++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 777888999999999999887754321 136677888999999999999999988654
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=1.1e-11 Score=117.59 Aligned_cols=135 Identities=14% Similarity=0.049 Sum_probs=94.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----h
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD----EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----L 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 449 (588)
..+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566677777778888888888777654210 111 226777778888889999999888887653211112 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-M---AA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
..+..+...|...|++++|.+.++++. . .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 567778888999999999999988762 1 11 2446777888899999999999999999988764
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=1.2e-10 Score=108.78 Aligned_cols=213 Identities=10% Similarity=-0.037 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHhH-------hcCCh-------hHHHHHhccCCC---C-CcchHHHHHHHHHh
Q 007818 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYA-------KCGNI-------AKALQVFHEMPE---R-NSLTYTAIIGGLAL 390 (588)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 390 (588)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887764 346667777777765 35886 899999988654 3 45589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH-hcCChHH
Q 007818 391 HGKALDAISYFSEMIGVGLMPD-EI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG-RSGLLEE 467 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 467 (588)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 7888899999999999999999999873 3445566654444422 3799999
Q ss_pred HHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 468 AEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLEL---DPQ-DSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 468 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
|.++|+++. ..| +...|..++..+...|++++|..+++++++. .|+ +...|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999873 223 6778888988899999999999999999996 443 5678899999999999999999999999
Q ss_pred HhcCC
Q 007818 542 EERGV 546 (588)
Q Consensus 542 ~~~~~ 546 (588)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=5.1e-11 Score=105.98 Aligned_cols=206 Identities=10% Similarity=0.010 Sum_probs=155.4
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIG 386 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 386 (588)
.|...+......+...|++++|...|+...+....++...+..+..++...|++++|...+++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888899999999999999998887546777777788999999999999999988764 24567888889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHH
Q 007818 387 GLALHGKALDAISYFSEMIGVGLMPDE-------ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMV 456 (588)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 456 (588)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.++++.+. .|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 9999999999999999988853 3334 35777778888899999999999999863 343 56777788
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
.+|...|+. +++++. ...+...+.... ....+.+++|+..+++++++.|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766543 222221 112233333322 334567899999999999999999988887776543
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.9e-11 Score=121.42 Aligned_cols=179 Identities=12% Similarity=0.009 Sum_probs=155.7
Q ss_pred hhHHHHHhccCC---CCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 363 IAKALQVFHEMP---ERNSLTYTAIIGGLALHGKA-LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 363 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++++...++... ..+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555443 23567888899999999999 99999999998863 44577899999999999999999999999
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhc---------CChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh--------CCHHH
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRS---------GLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH--------GNVSI 499 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------~~~~~ 499 (588)
+.+. .|+...+..+...|... |++++|.+.++++. ..| +...|..+..++... |++++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9864 57788899999999999 99999999999873 344 578899999999888 99999
Q ss_pred HHHHHHHHhccCC---CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDP---QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+..++++++++| +++.++..++.+|...|++++|.+.++++.+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999998754
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.3e-10 Score=99.50 Aligned_cols=167 Identities=12% Similarity=-0.021 Sum_probs=143.0
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456677888899999999999999875 356678888999999999999999999998863 456778888999999
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
..|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++. . +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 35567888999999999999999999999873 2 3367788889999999999999999
Q ss_pred HHHHHhccCCCCCch
Q 007818 503 AAMKLLELDPQDSGI 517 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~ 517 (588)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999877644
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=116.21 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHhhhCCC--------CC---cccHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 007818 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPE--------KY---VVPWNAIIGGYVQAKRSKEALALFHEMQAT------GI 308 (588)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 308 (588)
...+..+...+...|++++|...++.+.. .+ ...+..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35678888999999999999999988764 12 223788899999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHcccCChhHHHHHHHHHHHhC------CCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchH
Q 007818 309 KP-DAVTTVHCLSACSQLGALDDGIWIHRFIEKEN------FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381 (588)
Q Consensus 309 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (588)
.| ...++..+...+...|++++|...++.+.+.. ..|. ....+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 34567777788888889999888887776541 1111 12234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhc------CCCCC
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGV------GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIF------RLSPK 448 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 448 (588)
..+...+...|++++|+..++++.+. +..|. ..++..+..++...|++++|...++++.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44455555555556665555555442 11222 2356666777777777777777777776420 01111
Q ss_pred -------hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 449 -------LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 449 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122233334445566666666676664 233 4567888888999999999999999999988774
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1e-09 Score=105.96 Aligned_cols=233 Identities=13% Similarity=-0.023 Sum_probs=113.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHh
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGI-KPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMY 357 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 357 (588)
...+...|++++|+..+++...... .++ ..++..+...+...|+++.|...++...+.... ++...
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-------- 179 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI-------- 179 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH--------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh--------
Confidence 3445566777777777776654310 122 223444445555555555555555444332110 00000
Q ss_pred HhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhccCCchHHH
Q 007818 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV----GLMP-DEITFLGILSACCHGGLVDEG 432 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a 432 (588)
....+++.+...|...|++++|+..+++..+. +..+ ...++..+..++...|++++|
T Consensus 180 ------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 180 ------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 00123444444555555555555555444331 1000 112455555566666666666
Q ss_pred HHHHHHhhhhc---CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----C--CCC-HhHHHHHHHHHHhhCC---HHH
Q 007818 433 RKYFAQMSSIF---RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----M--AAD-VVVWGALFFACRLHGN---VSI 499 (588)
Q Consensus 433 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~~~---~~~ 499 (588)
.+.+++..+.. +.+....++..++..|.+.|++++|.+.+++.. . .|. ...+..+...+...++ +.+
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 66666554410 112224555566666666666666666665541 1 122 1223333333444555 555
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|+..+++. ...|.....+..++..|...|++++|.+.++++.+
T Consensus 322 al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555542 12233344566777777777777777777777653
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=2.2e-10 Score=106.04 Aligned_cols=188 Identities=12% Similarity=0.031 Sum_probs=121.8
Q ss_pred HhHhcCChhHHHHHhccCCC-------C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 007818 356 MYAKCGNIAKALQVFHEMPE-------R--NSLTYTAIIGGLALHGKALDAISYFSEMIGVGL---MPD--EITFLGILS 421 (588)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~ 421 (588)
.|...|++++|...|++..+ + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666655554431 1 134566777777777777777777777654210 111 246777788
Q ss_pred HhccC-CchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---H-----hHHHHH
Q 007818 422 ACCHG-GLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD---V-----VVWGAL 487 (588)
Q Consensus 422 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~-----~~~~~l 487 (588)
.|... |++++|+..|++..+...-..+ ..++..++..|.+.|++++|.+.|++.. ..|+ . ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999888764211111 3567788889999999999999998762 2222 1 146677
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--ccCChHHHHHHHHHHHh
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGI-----YVLLANMYR--DSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 543 (588)
..++...|++++|+..+++++++.|..+.. +..++.++. ..+++++|++.|+.+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 777888999999999999999999875543 344556664 45778888888866543
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=5.6e-10 Score=107.71 Aligned_cols=189 Identities=8% Similarity=-0.045 Sum_probs=142.2
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC-----C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC-CHHHH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPE-----R----NSLTYTAIIGGLALHGKALDAISYFSEMIGV----GL-MP-DEITF 416 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p-~~~~~ 416 (588)
.....+...|++++|...|++..+ + ...++..+...|...|+++.|+..+++..+. +- .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556677888888887776542 1 2346778888899999999999999887652 10 11 13478
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC------CCC-CHhHHH
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP------MAA-DVVVWG 485 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~ 485 (588)
..+..+|...|++++|.+.+++..+...-.++ ..++..++.+|...|++++|.+.+++.. ..| ...++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88899999999999999999988763221122 4578889999999999999999998773 234 355778
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCC--C---CchHHHHHHHHHccCC---hHHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQ--D---SGIYVLLANMYRDSNM---WEEAGKVRKM 540 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~---~~~~~~l~~~~~~~g~---~~~A~~~~~~ 540 (588)
.+...+...|++++|...++++++..+. + ...+..+...+...|+ +++|+.+++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8888899999999999999999987543 2 3346677888888898 7777777765
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=3.4e-09 Score=95.76 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=90.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC-----ChHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-----KLKH 451 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~ 451 (588)
..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~ 176 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHH
Confidence 334445556666666666666666666554321 23345556666666666666666666666543 34 2333
Q ss_pred HHHHHHH--HHhcC--ChHHHHHHHHhCCCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc----------CCCCCc
Q 007818 452 YSCMVDL--LGRSG--LLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLLEL----------DPQDSG 516 (588)
Q Consensus 452 ~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~ 516 (588)
...|+.+ ....| ++.+|..+|+++..+ |+..+...++.++...|++++|+..++.+.+. +|+|+.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 3444433 22223 666666666666322 44222233333566666677776666665554 366666
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++.+++.+....|+ +|.++++++.+.
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66666655666665 666666666554
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=1.1e-09 Score=96.82 Aligned_cols=181 Identities=13% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC--CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE--RN----SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI----TFLG 418 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~ 418 (588)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..++...|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 334455556666666666666666552 22 134555666666666666666666666654 22221 2333
Q ss_pred HHHHhcc------------------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 007818 419 ILSACCH------------------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480 (588)
Q Consensus 419 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 480 (588)
+..++.. .|++++|...|+++.+. .|-+...+........-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 3333322 34555555555555542 111222221111100000000
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113455668899999999999999999999876 568999999999999999999999998776543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.7e-10 Score=104.94 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=152.7
Q ss_pred cccCChhHHHHHHHHHHHh-------CCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-------C----CcchHHHH
Q 007818 323 SQLGALDDGIWIHRFIEKE-------NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-------R----NSLTYTAI 384 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l 384 (588)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++..+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888776553 1122456778889999999999999998887652 1 24567888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhc------CCCCChHH
Q 007818 385 IGGLALHGKALDAISYFSEMIGV------GLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIF------RLSPKLKH 451 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 451 (588)
...|...|++++|+..+++..+. .-.| ...++..+...+...|++++|...++++.+.. ..+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1112 24577888889999999999999999887641 12223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-HhHHHHHHHHHHhhC------CHHHHHHHHHHHhccCCCC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP----------MAAD-VVVWGALFFACRLHG------NVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~ 514 (588)
+..++..|...|++++|.++++++. ..+. ...+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888999999999999999998762 1222 223333333333222 2333333444333344556
Q ss_pred CchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+.++..++.+|...|++++|.++++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999998753
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=3e-08 Score=95.37 Aligned_cols=228 Identities=14% Similarity=-0.023 Sum_probs=126.2
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcc-----hHHHHHHHHhccCChhHHHHHHHHHHHhCCC-CC----hhhHHHH
Q 007818 152 INGFVRSGFPREAIRLFRDMQLERVEPDEV-----TMIGMVSACAQLEDLNLGREIHWYISESGLT-LT----VPLANAL 221 (588)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 221 (588)
...+...|++++|...+++..... +++.. .+..+...+...|+++.|...++........ .+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345566788888888887776543 22211 3444555666778888888777776654211 11 1234566
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC----cccHHHHHHHHHhcCChHHHH
Q 007818 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY----VVPWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 222 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 297 (588)
...+...|++++|...+++..+ +......++ ...+..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQ------------------------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH------------------------HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777788888888777765421 111111110 112455666777778888888
Q ss_pred HHHHHHHHCCCC--C--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc-hHHH-----HHHHHhHhcCChhHHH
Q 007818 298 ALFHEMQATGIK--P--DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGT-----ALVDMYAKCGNIAKAL 367 (588)
Q Consensus 298 ~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~ 367 (588)
..+++....... + ...++..+...+...|++++|...++........++. ..+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888777653211 1 1234555666667777777777777766544222111 1111 1223355667777777
Q ss_pred HHhccCCCCCc-------chHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 368 QVFHEMPERNS-------LTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 368 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
..+++...+.. ..+..+...+...|++++|...+++.
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76666554221 12334445555555555555555544
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1.4e-09 Score=98.81 Aligned_cols=181 Identities=8% Similarity=-0.049 Sum_probs=100.7
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC--C-C---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE--R-N---SLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD-EITFLGI 419 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~~l 419 (588)
..+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+... .|. ...+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344445555555555555555555542 1 1 23444455555555555555555555554311 111 2234444
Q ss_pred HHHhcc--------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 007818 420 LSACCH--------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491 (588)
Q Consensus 420 ~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 491 (588)
..++.. .|++++|...|+++.+.+ +.+......+.......+.. ...+..+...+
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~~ 158 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 444444 555555555555555431 11111111111100000000 01135567778
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHcc----------CChHHHHHHHHHHHhcC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDS----------NMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|+..++++++..|+++ .++..++.+|... |++++|.+.++++.+..
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 889999999999999999998844 4788889999876 88899999999987753
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=6.2e-11 Score=97.29 Aligned_cols=143 Identities=9% Similarity=-0.043 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
|...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+. .+.+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334455567777777777776553 332 334556777788888888888888888764 234577788888888888
Q ss_pred CChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHH-HHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 463 GLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERA-AMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 463 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
|++++|...|+++ ...| +...+..+...+.+.|++++|... ++++++++|+++.++.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888776 3445 466777788888888887765554 588888888888888888888877775
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.1e-09 Score=87.96 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=89.3
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 493 (588)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.++++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555566666666666666543 12345555566666666666666666666552 22345566667777778
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.|++++|...++++++..|.++..+..++.++.+.|++++|.+.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888889999999999999999998887643
No 91
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=7.5e-09 Score=90.44 Aligned_cols=163 Identities=9% Similarity=-0.052 Sum_probs=134.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC----chHHHHHHHHHhhhhcCCCCChHH
Q 007818 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG----LVDEGRKYFAQMSSIFRLSPKLKH 451 (588)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 451 (588)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456677777888888889999999999888865 56677777777777 6 899999999999764 35677
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCCC-CC---HhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 452 YSCMVDLLGR----SGLLEEAEQLIRSMPMA-AD---VVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 452 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
+..|...|.. .+++++|.++|++.... |. +..+..+...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888877 88999999999987533 43 7788888888888 78999999999999998 66888999
Q ss_pred HHHHHHHcc-C-----ChHHHHHHHHHHHhcCCc
Q 007818 520 LLANMYRDS-N-----MWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 520 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 547 (588)
.|+.+|... | ++++|.+.+++..+.|.+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999764 4 899999999999888754
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.3e-09 Score=100.82 Aligned_cols=173 Identities=9% Similarity=-0.066 Sum_probs=109.8
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC-CC----H
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE-----RN----SLTYTAIIGGLALH-GKALDAISYFSEMIGVGLM-PD----E 413 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-p~----~ 413 (588)
+++.+..+|...|++++|...+++..+ .+ ..+++.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444555555555555554444331 01 23566778888885 8888888888887653110 11 2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh-----HHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH------
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL-----KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADV------ 481 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~------ 481 (588)
.++..+...+...|++++|...|+++.+...-.+.. ..+..++.++...|++++|...+++.. ..|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 467778888899999999999999988742111221 256777888889999999999998863 34432
Q ss_pred hHHHHHHHHHH--hhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 482 VVWGALFFACR--LHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 482 ~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
..+..++.++. ..+++++|+..++++.+++|.+...+..+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 13444555554 45678899999988888888554444333
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=2e-09 Score=99.19 Aligned_cols=176 Identities=7% Similarity=-0.049 Sum_probs=140.1
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc
Q 007818 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443 (588)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (588)
+...+.+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344445555444455667778888899999999999999998863 445668888899999999999999999998764
Q ss_pred CCCCChHHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--CchH
Q 007818 444 RLSPKLKHYS-CMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD--SGIY 518 (588)
Q Consensus 444 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~ 518 (588)
.|+..... .....+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ +.++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 35544333 2333466778888888888876 3344 67788899999999999999999999999999987 8899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHh
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
..++.++...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999988754
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=5.1e-09 Score=94.63 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-----NSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
++..+++..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 334444456777788888888888888876432 34567777888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--hcc--CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 406 GVGLMP-----DEITFLGILSA--CCH--GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 406 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
+. .| +..+...++.+ ... .+++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 35565666655 222 34899999999998764 3543333344448889999999999998652
Q ss_pred C-----------CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 477 M-----------AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 477 ~-----------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
. .| ++.++..++......|+ .|.++++++.+..|++|.+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 24 45566566666666676 8899999999999999876653
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=1.3e-09 Score=99.19 Aligned_cols=203 Identities=11% Similarity=-0.005 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCc--chHHHHHHHHhHhcCChhHHHHHhccCCC--CC----cchH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPE--RN----SLTY 381 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~ 381 (588)
.+...+......+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777788888999999999999999988753221 56678889999999999999999998874 32 3457
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 382 TAIIGGLAL--------HGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 382 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
..+..++.. .|++++|+..|+++.+. .|+.. .. .+...+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~--------------~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD--------------DATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH--------------HHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH--------------HHHHHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999885 34432 22 111111122111 11225
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhh----------CCHHHHHHHHHHHhccCCCCCch
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLH----------GNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
..++..|.+.|++++|...|+++. ..|+ ...+..+..++... |++++|+..++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567778888888888888887762 2232 34566666666655 89999999999999999988654
Q ss_pred ---HHHHHHHHHccCChHH
Q 007818 518 ---YVLLANMYRDSNMWEE 533 (588)
Q Consensus 518 ---~~~l~~~~~~~g~~~~ 533 (588)
...+..++.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4445555555555443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=1.1e-09 Score=113.91 Aligned_cols=168 Identities=10% Similarity=-0.041 Sum_probs=85.3
Q ss_pred HhcCChhHHHHHhccCC-----------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 358 AKCGNIAKALQVFHEMP-----------ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
...|++++|.+.+++.. ..+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 34455555555554443 1233445555555555555555555555555432 22334555555555555
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAA 504 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (588)
|++++|.+.|+++.+. .+.+...+..+..+|.+.|++++ .+.|+++ ...| +...+..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555542 12234455555555555555555 5555544 1222 3445555555555555555555555
Q ss_pred HHHhccCCCCCchHHHHHHHHHccC
Q 007818 505 MKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+++++++|+++.++..++.++...|
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555555555555554433
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=4e-09 Score=108.97 Aligned_cols=162 Identities=15% Similarity=0.040 Sum_probs=114.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (588)
+..+|+.+..++.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|++++|...++++++.. +.+...+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677777777777777777777777776 4454 4467777777777777777777777777764 2345677777
Q ss_pred HHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChh
Q 007818 121 IHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 197 (588)
..+|...|++++|++.|++ +.+.+..+|+.+...+...|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 7777777777777777776 344566677777777777888888888887777652 223456677777777777777
Q ss_pred HHHHHHHHHHH
Q 007818 198 LGREIHWYISE 208 (588)
Q Consensus 198 ~a~~~~~~~~~ 208 (588)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=2.1e-09 Score=90.98 Aligned_cols=159 Identities=7% Similarity=-0.025 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH-H
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL-L 459 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 459 (588)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++... .|++..+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445556666777777777776665532 234456666677777777777777777777653 1233333222211 1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHccCChHHHH
Q 007818 460 GRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD--SGIYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 535 (588)
...+...+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222333456666665 2345 57788888888999999999999999999999874 568999999999999999999
Q ss_pred HHHHHHHh
Q 007818 536 KVRKMMEE 543 (588)
Q Consensus 536 ~~~~~~~~ 543 (588)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=6e-09 Score=83.45 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677888888899999999999887754 445667788888888899999999999998874 244577788888899
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 460 GRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...|++++|.++++++. .+.+...+..+...+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999998763 2235677888888899999999999999999998885
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=3.1e-09 Score=108.60 Aligned_cols=160 Identities=8% Similarity=-0.027 Sum_probs=124.6
Q ss_pred cCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 360 CGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
.|++++|.+.+++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 346688889999999999999999999999864 445678889999999999999999999
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh---CCHHHHHHHHHHHhccC
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH---GNVSIGERAAMKLLELD 511 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 511 (588)
++..+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 34457889999999999999999999999873 334 577888888899999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 007818 512 PQDSGIYVLLA 522 (588)
Q Consensus 512 p~~~~~~~~l~ 522 (588)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888776
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=3.9e-10 Score=92.47 Aligned_cols=125 Identities=12% Similarity=0.022 Sum_probs=103.3
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 496 (588)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|+++ ...| +...|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445667788999999999988752 2223455677899999999999999999987 3445 68899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH-HHHHHhcC
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV-RKMMEERG 545 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 545 (588)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887765 58877643
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=1.4e-09 Score=88.65 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+.+.|++++|.+.|+++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5677788889999999999999999873 445 67889999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 007818 527 DSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~~ 546 (588)
+.|++++|++.|+++.+...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999987653
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=5.1e-09 Score=96.21 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHHh------CC-CCcchHHHHHHHHhHhcCChhHHHHHhccCCC-------C-
Q 007818 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKE------NF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-------R- 376 (588)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 376 (588)
..++..+...+...|++++|...++.+.+. +. +....++..+..+|...|++++|...+++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666777777777777666543 11 12344566677777777777777777766542 1
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhc---
Q 007818 377 ---NSLTYTAIIGGLALHGKALDAISYFSEMIGV------GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIF--- 443 (588)
Q Consensus 377 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 443 (588)
...++..+...+...|++++|...+++..+. +-.|+ ..++..+..++...|++++|..+++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2346777888888888888888888887664 11222 3467788888999999999999999887631
Q ss_pred ---C-CCCChHHHHHHHHHHHhcCC------hHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 444 ---R-LSPKLKHYSCMVDLLGRSGL------LEEAEQLIRSMPMA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 444 ---~-~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
. .......+..+...+...+. +.++...++..... | ....+..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 11223344444444444333 34444444444322 3 35577888888999999999999999998753
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=8.4e-09 Score=89.88 Aligned_cols=128 Identities=6% Similarity=-0.013 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. .|.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 448888999999999999999998863 445678889999999999999999999999874 34457888888888876
Q ss_pred cCC--hHHHHHHHHhCCCCCC--HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 462 SGL--LEEAEQLIRSMPMAAD--VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 462 ~g~--~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
.|+ ...+...++... .|+ ...+.....++...|++++|+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 445666666653 333 334445566677789999999999999999995
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=1.8e-08 Score=102.84 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666655532 223455566666666666666666666666542 233455566666666666666666666
Q ss_pred HHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc---CChHHHHHHHHHHHhc
Q 007818 472 IRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS---NMWEEAGKVRKMMEER 544 (588)
Q Consensus 472 ~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 544 (588)
+++.. ..| +...+..+..++...|++++|...++++++..|+++.++..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66542 222 3555666666666666666666666666666666666666666666666 6666666666665443
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.6e-09 Score=110.96 Aligned_cols=154 Identities=9% Similarity=-0.065 Sum_probs=135.1
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 389 ALHGKALDAISYFSEMI--------GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++.+. .+.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 78899999999999998 432 345567888899999999999999999999874 3456788999999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 461 RSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
..|++++|.+.|+++ ...| +...+..+..++...|++++ +..++++++++|+++.++..++.+|.+.|++++|++.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987 3445 56788889999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 007818 539 KMMEERGV 546 (588)
Q Consensus 539 ~~~~~~~~ 546 (588)
+++.+.+.
T Consensus 558 ~~al~l~P 565 (681)
T 2pzi_A 558 DEVPPTSR 565 (681)
T ss_dssp HTSCTTST
T ss_pred HhhcccCc
Confidence 98876543
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=7.3e-09 Score=81.76 Aligned_cols=94 Identities=9% Similarity=-0.027 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
.+...+..|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555555555555555555554 2222 4455555555555666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhc
Q 007818 529 NMWEEAGKVRKMMEER 544 (588)
Q Consensus 529 g~~~~A~~~~~~~~~~ 544 (588)
|++++|++.|+++.+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666655543
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=2.1e-08 Score=93.39 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=148.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc-cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHH
Q 007818 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ-LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 368 (588)
.|++++|.+++++..+.. +.. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456777777777766531 111 111 45666666666543 345666777777777
Q ss_pred HhccCCC-----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhccCCchHHHH
Q 007818 369 VFHEMPE-----RN----SLTYTAIIGGLALHGKALDAISYFSEMIGV----GLMPD--EITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 369 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~ 433 (588)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+..+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 7765542 11 346777888888899999999988876542 2 222 2467778888888 9999999
Q ss_pred HHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HhHHHHHHHHHHhhCCHHHHH
Q 007818 434 KYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M---AAD----VVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~A~ 501 (588)
..+++..+...-..+ ..++..+...|.+.|++++|.+.|++.. . .++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998764211111 4678888999999999999999998762 1 122 225566666777889999999
Q ss_pred HHHHHHhccCCCCCch-----HHHHHHHHHccCChHHHHHH
Q 007818 502 RAAMKLLELDPQDSGI-----YVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 537 (588)
..+++++ ..|..... +..++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 98875433 34455555 56777766664
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=6.8e-09 Score=90.46 Aligned_cols=158 Identities=13% Similarity=0.018 Sum_probs=117.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHhccCCchHHHHHHHHHhhhhcCCC
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPD-EITFLG----------------ILSACCHGGLVDEGRKYFAQMSSIFRLS 446 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 446 (588)
....+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...+++..+. .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 444566677777777777777664 343 334555 888899999999999999999984 34
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhC--CHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHG--NVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
.+...+..+..+|...|++++|.+.|+++ ...| +...+..+...+...| +.+.+...+.++....| ....+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 56888999999999999999999999987 3445 5778888888876554 34556677777654333 233566788
Q ss_pred HHHHccCChHHHHHHHHHHHhcCC
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.++...|++++|++.|+++.+...
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 889999999999999999987643
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.92 E-value=1.5e-06 Score=86.11 Aligned_cols=368 Identities=8% Similarity=-0.046 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCC-hhHHHHHHHHhHHC-CCCC-CcchHHHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSGF-PREAIRLFRDMQLE-RVEP-DEVTMIGMVS 188 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~ 188 (588)
..+|...+..+-. |+++.+..+|++.. .|++..|...+....+.++ .+.+..+|+..... |..| +...|...+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3566666666644 77888888888733 3677778777777666553 35566777766543 4333 4444555554
Q ss_pred HHhc----cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 007818 189 ACAQ----LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 189 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (588)
.+.. .++.+.+..+|+.++......-..+|......- .......+.+++.+... .|.. + ...+++
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~~----~y~~---a---r~~y~~ 162 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTLP----IFQS---S---FQRYQQ 162 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHH----HHHH---H---HHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHhH----HHHH---H---HHHHHH
Confidence 4432 356777888888887632111112222222111 11112222222222100 0000 0 000122
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcC--C-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHH
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAK--R-----SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (588)
+...+.. .+...|...+..-...+ - .+++..+|+++.... +.+...|...+.-+...|+.+.|..+++.
T Consensus 163 ~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 163 IQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222221 12223444444322211 0 345677888887753 44566676677777788899999999988
Q ss_pred HHHhCCCCcchHHHHHHHHhHhcCChhHH-HHHhccCC------------CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 338 IEKENFNLNVVLGTALVDMYAKCGNIAKA-LQVFHEMP------------ERNSLTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
.... +.+...+.. |....+.++. ..+.+... ......|...+....+.++.+.|..+|+..
T Consensus 239 Ai~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 239 GIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8887 333333322 2211111111 11211110 011245666666666778899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHhcc-CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhH
Q 007818 405 IGVGLMPDEITFLGILSACCH-GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483 (588)
Q Consensus 405 ~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 483 (588)
.. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+...++.....|+.+.|..+|+++. .....
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~l 386 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRM 386 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH
Confidence 32 12344445433322222 336899999999998853 3345666777888888999999999999983 35667
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...+.--...|+.+.+..++++..+
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777788999999888888874
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=3.5e-09 Score=86.40 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...+..+...+.+.|++++|...|+++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35667778888888999999999888762 334 6778888888888999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhcC
Q 007818 526 RDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|.+.++++.+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887653
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.91 E-value=3.9e-08 Score=86.08 Aligned_cols=129 Identities=12% Similarity=-0.078 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+. .+.+...+..++.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34556667777788888888777653 556777777777778888888888888877764 234566777777777
Q ss_pred HhcCChHHHHHHHHhCC-CCC-----------------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 460 GRSGLLEEAEQLIRSMP-MAA-----------------DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~-~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
...|++++|.+.++++. ..| ....+..+..++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77888888877777652 111 12566667777777777777777777777777764
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=8.7e-09 Score=95.99 Aligned_cols=197 Identities=9% Similarity=-0.083 Sum_probs=149.9
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007818 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403 (588)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 403 (588)
..|++++|..++++..+.... . .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788899999888765321 1 01115788888887665 46778899999999999988
Q ss_pred HHHCCC---CCC--HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCC--C--ChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007818 404 MIGVGL---MPD--EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS--P--KLKHYSCMVDLLGRSGLLEEAEQLIRS 474 (588)
Q Consensus 404 ~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (588)
..+... .+. ..+|..+..+|...|++++|+..+++..+.+.-. + ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 765311 111 3478888899999999999999999887642111 1 14577888899988 999999999987
Q ss_pred CC-C-----CC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHccCChHHHHHHHHH
Q 007818 475 MP-M-----AA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS------GIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 475 ~~-~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.. . .+ ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 1 11 145778888899999999999999999999876543 2677788888999999999999999
Q ss_pred HH
Q 007818 541 ME 542 (588)
Q Consensus 541 ~~ 542 (588)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 98
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=1.8e-08 Score=79.48 Aligned_cols=115 Identities=11% Similarity=-0.025 Sum_probs=95.8
Q ss_pred CCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHH
Q 007818 409 LMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWG 485 (588)
Q Consensus 409 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 485 (588)
+.|+. ..+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35667788888999999999999998874 3456788889999999999999999999876 3344 577889
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
.+..++...|++++|+..++++++++|+++.++..|..++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999988887653
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=1.2e-07 Score=87.51 Aligned_cols=161 Identities=11% Similarity=-0.044 Sum_probs=122.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGL-MPDEI----TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYS 453 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 453 (588)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998877421 22221 2334666777888999999999999874122222 33688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchH
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSMP-------MA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIY 518 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 518 (588)
.++..|...|++++|.+.++++. .. + ...++..++..|...|++++|+..+++++++.+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999988763 11 2 23477888889999999999999999999876433 5679
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHh
Q 007818 519 VLLANMYRDSNM-WEEAGKVRKMMEE 543 (588)
Q Consensus 519 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 543 (588)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998864
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=2.4e-08 Score=91.88 Aligned_cols=136 Identities=11% Similarity=0.001 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHH
Q 007818 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALF 488 (588)
Q Consensus 410 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 488 (588)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++..|.+.|++++|.+.++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 334456777888889999999999999999874 34567889999999999999999999999985 457655443333
Q ss_pred H-HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 489 F-ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 489 ~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
. .+...++.+.|+..++++++.+|+++.++..++.+|...|++++|++.++++.+....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 3667888889999999999999999999999999999999999999999999886543
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=7.7e-08 Score=88.92 Aligned_cols=163 Identities=10% Similarity=-0.036 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhccCCchHHHHHHHHHhhhhcC--CCCC--h
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE------ITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPK--L 449 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 449 (588)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445667788889999999999887775322 22 1234455667788999999999998875311 1122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC------C
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD-----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ------D 514 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~ 514 (588)
.+++.++..|...|++++|.+.++++. ..|+ ..++..++..|...|++++|+..++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999998762 1122 257888888999999999999999999876542 1
Q ss_pred CchHHHHHHHHHccCChHHH-HHHHHHHHh
Q 007818 515 SGIYVLLANMYRDSNMWEEA-GKVRKMMEE 543 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 543 (588)
+.++..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 787887754
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=4.2e-08 Score=81.85 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=102.0
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 492 (588)
.+..+...+...|++++|...+++..+. .+.+...+..++..+...|++++|.+.+++.. ..| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566667777888888888888888763 34457778888888888888888888888762 233 5677888888899
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHccCChHHHHHHHHHHHh
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANM--YRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 543 (588)
..|++++|...++++++..|.++..+..+..+ +...|++++|++.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555554 8889999999999988754
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=1.6e-08 Score=85.61 Aligned_cols=120 Identities=9% Similarity=0.009 Sum_probs=73.6
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH-HHhhCCH--H
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA-CRLHGNV--S 498 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~--~ 498 (588)
...|++++|...++...+. .+.+...+..++..|...|++++|.+.++++. ..| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666666553 23345666666666666666666666666552 222 44555556555 5566666 7
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777766543
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=7.1e-07 Score=81.59 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH--HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-----
Q 007818 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD--EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL----- 464 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 464 (588)
+++++++.+++.+.+.. +-+..+|..-..++.+.|.++ ++.++++++.+. .+-+...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 34455555555555432 334444444444444444444 555555555542 22334444444444444443
Q ss_pred -hHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC-HHHHHHHHHHHhccC---CCCCchHHHHHHHHHccCChHHHHHH
Q 007818 465 -LEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGN-VSIGERAAMKLLELD---PQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 465 -~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
++++++.++++. ..| +...|..+...+.+.|+ .+.+.....++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 455555554431 222 44455555545544444 233444555555444 55566666666666666666666666
Q ss_pred HHHHHh
Q 007818 538 RKMMEE 543 (588)
Q Consensus 538 ~~~~~~ 543 (588)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666643
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=2.7e-08 Score=80.61 Aligned_cols=96 Identities=9% Similarity=-0.051 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+.+.|++++|.+.|+++. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556667778888888888888888762 334 67778888888888999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhc
Q 007818 527 DSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~ 544 (588)
..|++++|.+.++++.+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=1.2e-06 Score=86.67 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS-QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
|...+....+.++.+.|..+|+.. ... ..+...|......-. ..++.+.|..+|+...+... .++..+...++...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 555555555666777777777777 211 122233322111111 12357777777777666531 12334444556566
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
..|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..++++..
T Consensus 366 ~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777777777632 34455555555555566666666665554
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=1.1e-07 Score=83.87 Aligned_cols=184 Identities=12% Similarity=-0.048 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCc--chHHHHHHHHhHhcCChhHHHHHhccCCC--CCc-c---hHHH
Q 007818 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPE--RNS-L---TYTA 383 (588)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~ 383 (588)
...+..+...+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|+++.+ |+. . ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667788899999999999999988754322 35677889999999999999999999864 332 2 4555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcC
Q 007818 384 IIGGLAL------------------HGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 384 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999986 45443 2211110 011111111
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
.....++..|.+.|++++|...|+++. ..|+ ...+..+..++.+.|++++|+..++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122456778889999999999998873 2343 246778888899999999999999999998887543
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=7.5e-08 Score=76.78 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFAC 491 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~ 491 (588)
..+..+...+...|++++|...++++.+ ..+.+...+..++..|...|++++|.+.++++. .. .+...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3555566666666666666666666664 223345666666666666777777776666552 22 2456667777777
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
...|++++|+..++++++..|.++..+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788888888888888888888888888888887776653
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=2.5e-07 Score=80.72 Aligned_cols=174 Identities=6% Similarity=-0.144 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALHG----KALDAISYFSEMI 405 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 405 (588)
|...|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 444555566666666666666666666543 345556666666666 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHhhhhcCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHhCC
Q 007818 406 GVGLMPDEITFLGILSACCH----GGLVDEGRKYFAQMSSIFRLS-PKLKHYSCMVDLLGR----SGLLEEAEQLIRSMP 476 (588)
Q Consensus 406 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 476 (588)
+.| +...+..+...|.. .+++++|.++|++..+. +.. ..+..+..|...|.. .+++++|.++|++..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 754 55667777777776 77888888888888764 211 126777788888887 778889999888774
Q ss_pred CC-CCHhHHHHHHHHHHhh-C-----CHHHHHHHHHHHhccCC
Q 007818 477 MA-ADVVVWGALFFACRLH-G-----NVSIGERAAMKLLELDP 512 (588)
Q Consensus 477 ~~-~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 512 (588)
.. ++...+..+...|... | ++++|...++++.+...
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 22 4555666777776543 3 88999999999888765
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=7e-08 Score=76.60 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.+++.. ..| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777788888888888887764 23456777788888888888888888887762 233 56677888888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
+...|++++|...++++++..|+++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999888875
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=7.9e-08 Score=81.14 Aligned_cols=156 Identities=13% Similarity=-0.037 Sum_probs=108.9
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcc
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA-CCH 425 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 425 (588)
+......+...|++++|...|++..+ .+...+..+...+...|++++|+..+++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566677788888888888888774 35567778888888888888888888877664 3344333222211 112
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HhHHHHHHHHHHhhCCHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD---VVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~ 501 (588)
.+....|...+++..+. .+.+...+..+..++...|++++|.+.|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467788887763 2345778888888889999999999888876 34453 457778888888889998898
Q ss_pred HHHHHHhc
Q 007818 502 RAAMKLLE 509 (588)
Q Consensus 502 ~~~~~~~~ 509 (588)
..+++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=1.2e-07 Score=74.51 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|..+++++. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666677777778888888888877764 23456677777778888888888888877662 22356677777788
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888998998888888888888888888776544
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=6.8e-08 Score=76.30 Aligned_cols=97 Identities=12% Similarity=-0.053 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..++..+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4456677778888888888888887762 333 57778888888888899999999999999999998889999999999
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 007818 527 DSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~ 545 (588)
..|++++|.+.++++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
No 130
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=6.7e-06 Score=75.14 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=171.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHcccC--ChhHHHHHHHHHHHhCCCCcchHHHHHHHHh----Hhc--
Q 007818 290 AKRSKEALALFHEMQATGIKPDAV-TTVHCLSACSQLG--ALDDGIWIHRFIEKENFNLNVVLGTALVDMY----AKC-- 360 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 360 (588)
....++|++++..++.. .|+.. .++.--.++...+ ++++++..++.+...+++ +..+++.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 33456899999998885 45544 4555555666667 899999999999887543 444444433333 344
Q ss_pred -CChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc------
Q 007818 361 -GNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKAL--DAISYFSEMIGVGLMPDEITFLGILSACCHGGL------ 428 (588)
Q Consensus 361 -~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------ 428 (588)
+++++++.+++.+.+ ++..+|+.-.-.+...|.++ ++++.++++.+.. .-|...|..-.......+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 789999999998874 45667777777778888888 9999999999875 4566777777766767666
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCCHhHHHHHHHHHHhhCCHHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE-AEQLIRSMP-M----AADVVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
++++++.++.+... .+-+...|+.+...+.+.|+..+ +.++.+++. . ..++..+..++..+.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 88999999999874 45678889988888988887555 556777653 1 2367788889899999999999999
Q ss_pred HHHHHhc-cCCCCCchHHHHHHH
Q 007818 503 AAMKLLE-LDPQDSGIYVLLANM 524 (588)
Q Consensus 503 ~~~~~~~-~~p~~~~~~~~l~~~ 524 (588)
+++++.+ .+|.....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 899888887766543
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=4.1e-07 Score=79.45 Aligned_cols=123 Identities=11% Similarity=-0.022 Sum_probs=79.4
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 429 (588)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566667777777777777666666666677777777777777777777666643 33455666666667777777
Q ss_pred HHHHHHHHHhhhhcCCCCC----------------hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 430 DEGRKYFAQMSSIFRLSPK----------------LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
++|.+.++++.+. .+.+ ...+..++.+|...|++++|.+.++++
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776653 1111 255666666777777777777777664
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=8.2e-08 Score=73.80 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLAN 523 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 523 (588)
+...+..++..+...|++++|...++++. . +.+...+..+...+...|++++|+..++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556677778888888888888887762 2 235677888888889999999999999999999999 9999999999
Q ss_pred HHHcc-CChHHHHHHHHHHHhcCCc
Q 007818 524 MYRDS-NMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 524 ~~~~~-g~~~~A~~~~~~~~~~~~~ 547 (588)
++... |++++|.+.++++.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876543
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=1.4e-08 Score=93.15 Aligned_cols=188 Identities=7% Similarity=-0.046 Sum_probs=121.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
..+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4455566667777777777777776552 255667777788888888888888888877753 335567777888888
Q ss_pred cCCchHHHHHHHHHhhhhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSP---KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
..|++++|...|+++.+...-.+ ....+..+ ...+...+.. .......++..... .+..+ ..|++++|+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~-~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHS-YLTRL-IAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHH-HHHHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHH-HHHHH-HHHHHHHHH
Confidence 88888888888888765411000 11111111 1112212211 12222222332222 22222 368999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHcc-CChHHHHHHHHHHHhc
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDS-NMWEEAGKVRKMMEER 544 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 544 (588)
+.++++++.+|++......+...+.+. +.+++|.++|+.+.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998887778887777776 7899999999988653
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=1.2e-07 Score=89.32 Aligned_cols=94 Identities=12% Similarity=-0.060 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...|..+..+|.+.|++++|.+.++++. ..| +...+..+..++...|++++|+..+++++++.|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888899999999999888762 334 67788888999999999999999999999999999999999999999
Q ss_pred ccCChHHH-HHHHHHHH
Q 007818 527 DSNMWEEA-GKVRKMME 542 (588)
Q Consensus 527 ~~g~~~~A-~~~~~~~~ 542 (588)
+.|++++| .+.++.+.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566654
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.70 E-value=6.4e-08 Score=75.68 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
.+..++..+.+.|++++|...++++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567778889999999999998873 344 6778888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 007818 529 NMWEEAGKVRKMMEERG 545 (588)
Q Consensus 529 g~~~~A~~~~~~~~~~~ 545 (588)
|++++|++.++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998654
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=4.2e-08 Score=79.93 Aligned_cols=106 Identities=9% Similarity=-0.016 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|.+.|+++. ..| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 346667777888899999999999998874 34567888889999999999999999998863 334 56678888888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
+...|++++|+..+++++++.|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999988766443
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=2.2e-06 Score=78.98 Aligned_cols=202 Identities=10% Similarity=-0.079 Sum_probs=137.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH---HHHHHHHhHhcCChhHHHHHhccCCCC
Q 007818 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL---GTALVDMYAKCGNIAKALQVFHEMPER 376 (588)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (588)
+..+......|+..++..+...+.-.- ..+.......+... +...+..+...|++++|...+++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 344443334677777766666554221 11111111222222 223466788899999999999886542
Q ss_pred C---c------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 377 N---S------LTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PD----EITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 377 ~---~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
. . ..+..+...+...+++++|+..+++..+.... ++ ..++..+..+|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1 12334667777888999999999999874322 22 226888999999999999999999998853
Q ss_pred cC----CCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHhHHHHHHHHHHhhC-CHHHHHHHHHHHh
Q 007818 443 FR----LSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-------MAA-DVVVWGALFFACRLHG-NVSIGERAAMKLL 508 (588)
Q Consensus 443 ~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 508 (588)
.. ..+. ..++..++..|.+.|++++|.+.+++.. ..+ -...+..+..++...| ++++|...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11 1111 3477889999999999999999998762 112 2667888888999999 4699999999997
Q ss_pred cc
Q 007818 509 EL 510 (588)
Q Consensus 509 ~~ 510 (588)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=2.7e-07 Score=74.03 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+...+..++..+...|++++|...|++. ...| +...+..+...+...|++++|+..+++++++.|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777777788888888888887765 2233 466777777788888888888888888888888888888888888
Q ss_pred HHccCChHHHHHHHHHHHhcC
Q 007818 525 YRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|...|++++|.+.++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888887653
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=2.8e-07 Score=74.86 Aligned_cols=104 Identities=7% Similarity=-0.042 Sum_probs=87.9
Q ss_pred CCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHH
Q 007818 410 MPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGA 486 (588)
Q Consensus 410 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 486 (588)
.|+. ..+..+...+.+.|++++|...|+++... -|.+...|..+..+|...|++++|.+.|+++ ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4443 36777788899999999999999999974 3456888999999999999999999999987 3445 5678888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
+..++...|++++|+..+++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999654
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=1.2e-07 Score=74.86 Aligned_cols=95 Identities=7% Similarity=-0.054 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc-------hHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG-------IYVL 520 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~ 520 (588)
..+..++..+.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..+++++++.|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777788888888888888765 2334 4667777777888888888888888888888776543 5667
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++.++...|++++|++.|++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777888888888888888887654
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=1.5e-07 Score=78.37 Aligned_cols=110 Identities=14% Similarity=-0.015 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFF 489 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 489 (588)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|.+.++++. ..| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457778888899999999999999999874 34467888899999999999999999998863 344 5778888888
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
++...|++++|+..+++++++.|+++..+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8999999999999999999999998886655553
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=2.1e-07 Score=78.61 Aligned_cols=128 Identities=7% Similarity=0.034 Sum_probs=101.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH-HHhcCCh--
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL-LGRSGLL-- 465 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 465 (588)
...|++++|+..++...+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998887753 456678888899999999999999999999874 24467778888888 7789998
Q ss_pred HHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 466 EEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 466 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
++|.+.++++. ..| +...+..+...+...|++++|...++++++..|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999998873 334 5678888888899999999999999999999998866543
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=1.9e-07 Score=83.31 Aligned_cols=192 Identities=9% Similarity=-0.097 Sum_probs=101.6
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcchHHHHH-------HHHhHhcCChhHHHHHhccCCC--C-------C----------
Q 007818 324 QLGALDDGIWIHRFIEKENFNLNVVLGTAL-------VDMYAKCGNIAKALQVFHEMPE--R-------N---------- 377 (588)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~---------- 377 (588)
..++...|.+.|..+....+. ....|..+ ...+.+.++..++...+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467888888888888777532 23344444 3333333344444444333332 1 1
Q ss_pred -----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hH
Q 007818 378 -----SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LK 450 (588)
Q Consensus 378 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 450 (588)
...+......+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 011233445566666677776666665553 243334444444566666666666666644331 0 111 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC---CC--HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMA---AD--VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
.+..+..++.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...|+++...+|+ +.+...|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4555666666666666666666655211 22 224445555566666666666666666666665 4444444
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=4.2e-07 Score=70.44 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
..+..++..+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++++..|.++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334445555555555555555555441 122 344555555555555666666666666666666555556666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 007818 528 SNMWEEAGKVRKMMEER 544 (588)
Q Consensus 528 ~g~~~~A~~~~~~~~~~ 544 (588)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 66666666666655543
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=3.7e-07 Score=72.61 Aligned_cols=100 Identities=9% Similarity=-0.039 Sum_probs=89.9
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
+.+...+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344678888999999999999999999986 3444 67788888889999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHHHHHhcC
Q 007818 524 MYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.+.|++++|.+.++++.+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=1.2e-07 Score=84.47 Aligned_cols=124 Identities=10% Similarity=-0.052 Sum_probs=72.6
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----hHHHHHHHHHHhh
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV----VVWGALFFACRLH 494 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~ 494 (588)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 445555666777777766666542 233224445555666667777777776655332322 2455555566666
Q ss_pred CCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 495 GNVSIGERAAMKLLELD--PQ-DSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|++++|+..++++.... |. .+.+...++.++.+.|+.++|...|+++....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777666432 32 33355666666677777777777777666544
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=1.1e-06 Score=75.98 Aligned_cols=153 Identities=10% Similarity=-0.041 Sum_probs=91.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc---CCCC-ChHHHHHHHHHHHhcCCh
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSP-KLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 465 (588)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..... +.++ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443332 111233456666666666777777777666665421 1111 134556666777777777
Q ss_pred HHHHHHHHhCC----CCC-C----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--C----CchHHHHHHHHHccCC
Q 007818 466 EEAEQLIRSMP----MAA-D----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--D----SGIYVLLANMYRDSNM 530 (588)
Q Consensus 466 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 530 (588)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++..+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77777776541 011 1 234566666777788888888888877754321 2 2235678888888888
Q ss_pred hHHHHHHHHHHHh
Q 007818 531 WEEAGKVRKMMEE 543 (588)
Q Consensus 531 ~~~A~~~~~~~~~ 543 (588)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=6.5e-07 Score=69.32 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|.+.+++.. ..| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566667777788888888888887763 23456777778888888888888888887762 233 56677888888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...|++++|...++++++..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999999888888777654
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=3.3e-07 Score=79.01 Aligned_cols=167 Identities=8% Similarity=-0.025 Sum_probs=99.5
Q ss_pred hHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
....|+++.+.+.|+...+. ....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------------
Confidence 34445566666555543321 33455566666667777777777777766632 211100000
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
....-.. ......+..+..+|...|++++|.+.++++. ..| +...+..+..++...|++++|+..+++++++.
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0000000 0013567778888888888888888888762 233 57788888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHccCChHHHH-HHHHHHHhc
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAG-KVRKMMEER 544 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 544 (588)
|+++.++..++.++...|+.+++. ..+..+...
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988888777 555555443
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6.8e-07 Score=72.67 Aligned_cols=94 Identities=13% Similarity=-0.049 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
..+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33344444444444444444444433 22232 23344444444444555555555555555555444445555555
Q ss_pred HHccCChHHHHHHHHHHHh
Q 007818 525 YRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~ 543 (588)
|...|++++|.+.++++.+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.7e-07 Score=71.40 Aligned_cols=111 Identities=11% Similarity=-0.134 Sum_probs=84.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFAC 491 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 491 (588)
..+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|.+.+++.. ..| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34556666777788888888888887763 24456777888888888888888888887762 334 566788888888
Q ss_pred HhhCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 007818 492 RLHGNVSIGERAAMKLLELD------PQDSGIYVLLANMYR 526 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 526 (588)
...|++++|+..+++++++. |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88999999999999999988 877777777766543
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=7.3e-07 Score=69.86 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..++..+...|++++|.++++++. .+.+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999873 23467788889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 007818 527 DSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~ 545 (588)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999997754
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=3.5e-07 Score=73.42 Aligned_cols=63 Identities=16% Similarity=-0.035 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLEL-------DPQDSGIY----VLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..|.....++.+.|++++|+..+++++++ +|+++.+| ...+.++...|++++|++.|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888889999999998888888 99999999 99999999999999999999999764
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=4.4e-07 Score=73.34 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=83.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 492 (588)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|.+.|+++. ..| ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555667778888888888888888874 34467778888888888999999998888762 334 4567777888888
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
..|++++|+..+++++++.|+++........
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999999999999999988776655443
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=3.4e-06 Score=77.80 Aligned_cols=162 Identities=12% Similarity=-0.075 Sum_probs=119.3
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC--C-Cc------chHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE--R-NS------LTYTAIIGGLALHGKALDAISYFSEMIGVGL---MPD--EI 414 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~ 414 (588)
.+...+..+...|++++|.+.+++..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345567778889999999888875442 1 11 2234466667888999999999999876321 122 34
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-C------CC-CH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M------AA-DV 481 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~~-~~ 481 (588)
++..+...|...|++++|...++++.+.....|+ ..++..++..|...|++++|.+.+++.. . .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732111222 2578889999999999999999998762 1 11 25
Q ss_pred hHHHHHHHHHHhhCCHHHH-HHHHHHHhcc
Q 007818 482 VVWGALFFACRLHGNVSIG-ERAAMKLLEL 510 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 510 (588)
.++..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778888754
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=8.6e-07 Score=73.68 Aligned_cols=96 Identities=14% Similarity=-0.005 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455666666666677777766666552 223 45566666666666677777777777777777766666666777777
Q ss_pred ccCChHHHHHHHHHHHhc
Q 007818 527 DSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~ 544 (588)
..|++++|.+.++++.+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777666666554
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.5e-06 Score=69.21 Aligned_cols=113 Identities=11% Similarity=-0.050 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWG 485 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 485 (588)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++.. ..| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4456666677777777777777777777642 344 5667777778888888888888887652 233 566777
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.+..++...|++++|...++++++..|+++.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888899999999999999999999988888877776544
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=6.6e-07 Score=70.82 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...+..++..+...|++++|.+.++++. .. .+...+..+...+...|++++|+..++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999873 33 36778888899999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhcC
Q 007818 526 RDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|.+.++++.+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998764
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=2e-06 Score=71.38 Aligned_cols=128 Identities=9% Similarity=-0.095 Sum_probs=91.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (588)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345666777778888888888888877753 345667777888888888888888888888774 34456778888888
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CHhHH--HHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 459 LGRSGLLEEAEQLIRSMP-MAA-DVVVW--GALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
+...|++++|.+.++++. ..| +...+ ...+..+...|++++|+..+.+..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887762 223 33444 3333346677888888888877654
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=7.3e-07 Score=70.55 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=48.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-H---hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 007818 455 MVDLLGRSGLLEEAEQLIRSMP-MAAD-V---VVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLANMYR 526 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 526 (588)
++..+...|++++|.+.|+++. ..|+ . ..+..+..++...|++++|+..++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444455555555555555441 1121 1 244445555555666666666666666666655 444566666666
Q ss_pred ccCChHHHHHHHHHHHhc
Q 007818 527 DSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~ 544 (588)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666665543
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=9.5e-07 Score=76.33 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=92.4
Q ss_pred hcCChhHHHH---HhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhccCCchH
Q 007818 359 KCGNIAKALQ---VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG----VGLMP-DEITFLGILSACCHGGLVD 430 (588)
Q Consensus 359 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~~~~~ 430 (588)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44332223345566666667777777777777766554 11111 2235666677777788888
Q ss_pred HHHHHHHHhhhhcCCCC-C----hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HhHHHHHHHHHHhhCCH
Q 007818 431 EGRKYFAQMSSIFRLSP-K----LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD----VVVWGALFFACRLHGNV 497 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~ 497 (588)
+|.+.+++..+...-.+ + ...+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88877777655311112 1 3446667777788888888887777652 1112 22356666777788888
Q ss_pred HHHHHHHHHHhccC
Q 007818 498 SIGERAAMKLLELD 511 (588)
Q Consensus 498 ~~A~~~~~~~~~~~ 511 (588)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=1.2e-06 Score=70.06 Aligned_cols=113 Identities=11% Similarity=-0.101 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHH
Q 007818 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALF 488 (588)
Q Consensus 411 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 488 (588)
.+...+..+...+...|++++|...|+..... .+.+...+..++.++...|++++|...+++.. ..| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45567777778888888888888888888764 23456778888888888888888888887762 333 566788888
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCC-----CCchHHHHHHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQ-----DSGIYVLLANMY 525 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 525 (588)
.++...|++++|+..+++++++.|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999988887 455555555443
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=8.3e-07 Score=73.58 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..+..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456666667777777777777777777777777777777777777777777777777777665
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=2.6e-07 Score=71.74 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 462 SGLLEEAEQLIRSMP-M---AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
.|++++|+..|+++. . .| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555542 2 13 234555566666666677777777777777777766677777777777777777777
Q ss_pred HHHHHHhc
Q 007818 537 VRKMMEER 544 (588)
Q Consensus 537 ~~~~~~~~ 544 (588)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666543
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=7.1e-07 Score=88.26 Aligned_cols=118 Identities=9% Similarity=0.001 Sum_probs=94.3
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNV 497 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 497 (588)
...+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34466788888999988888874 2345778888888999999999999998876 3444 577888888889999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHH--HHccCChHHHHHHHH
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANM--YRDSNMWEEAGKVRK 539 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 539 (588)
++|+..+++++++.|+++.++..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999988888 888899999999988
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=3e-06 Score=83.76 Aligned_cols=84 Identities=12% Similarity=-0.028 Sum_probs=39.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 468 (588)
.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|++.++++.+ -.+.+...+..+..+|...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555444431 22234444445555555555555555555544 2222344444555555555555555
Q ss_pred HHHHHhC
Q 007818 469 EQLIRSM 475 (588)
Q Consensus 469 ~~~~~~~ 475 (588)
.+.++++
T Consensus 94 ~~~~~~a 100 (477)
T 1wao_1 94 LRDYETV 100 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=8.9e-07 Score=70.08 Aligned_cols=107 Identities=7% Similarity=-0.044 Sum_probs=58.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HhHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M----AAD----VVVWG 485 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 485 (588)
.+..+...+...|++++|...++++.+. .+.+...+..++..|...|++++|...++++. . .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555666666666666666666553 23345555556666666666666666655541 1 111 44455
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+...+...|++++|...++++++..| ++.....+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 555555556666666666666666555 34444444443
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.39 E-value=1.6e-05 Score=73.36 Aligned_cols=171 Identities=11% Similarity=0.092 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhc-C-Ch
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDAV-TTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC-G-NI 363 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 363 (588)
...+..++|+++++.+... .|+.. .++.--.++...+ .+++++.+++.+....++ +..+++.-..++... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3445567888888888875 34433 3444444444455 477777777777766432 444454444444444 4 66
Q ss_pred hHHHHHhccCCCCC---cchHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc----
Q 007818 364 AKALQVFHEMPERN---SLTYTAIIGGLALHGKAL--------DAISYFSEMIGVGLMPDEITFLGILSACCHGGL---- 428 (588)
Q Consensus 364 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 428 (588)
++++++++.+.+.+ ..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 67777777666543 334444444444444444 6666666666643 3355556665555555554
Q ss_pred ---hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 429 ---VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 429 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
++++++.++++... .+-+...|+.+-..+.+.|.
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45666666665542 23445555555555555443
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=0.00016 Score=66.74 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=163.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC-ChhHHHHHh
Q 007818 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG-NIAKALQVF 370 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~ 370 (588)
++..+...+..+...+ +..++|+.+++.+...+.. +..+++.-...+...| .++++++.+
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456666666666554 2345688888888877533 4455666666666777 599999999
Q ss_pred ccCCCC---CcchHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH--------HHHHHHH
Q 007818 371 HEMPER---NSLTYTAIIGGLALH-G-KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD--------EGRKYFA 437 (588)
Q Consensus 371 ~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~ 437 (588)
+.+... +..+|+.-...+... + ++++++.+++.+.+.. +-|...|..-..++.+.|.++ ++++.++
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 988753 455676666666665 6 8899999999998864 456667776666655555555 8999999
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhcCC-------hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCH-----------
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRSGL-------LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNV----------- 497 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~----------- 497 (588)
++.+. .+-+...|+....++.+.+. ++++++.++++ ...| |...|..+-..+.+.|+.
T Consensus 192 k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 99884 35577888888888888876 68888888776 3444 677777766666665543
Q ss_pred ---------HHHHHHHHHHhccC------CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeE
Q 007818 498 ---------SIGERAAMKLLELD------PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 498 ---------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
........++.... +..+.++..|+.+|...|+.++|.++++.+.+. ..|....+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 33333333443332 457778899999999999999999999998643 344444433
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=3.8e-06 Score=82.67 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...|..+..+|.+.|++++|++.++++. ..| +...+..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677888889999999999999998762 334 67788889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHH-HHHHHH
Q 007818 527 DSNMWEEAGK-VRKMME 542 (588)
Q Consensus 527 ~~g~~~~A~~-~~~~~~ 542 (588)
+.|++++|.+ .++.|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998875 355553
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=3.4e-07 Score=78.94 Aligned_cols=118 Identities=9% Similarity=-0.078 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C----------------HhHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-D----------------VVVWGAL 487 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l 487 (588)
.|+++++.+.|+..... .......+..+...+.+.|++++|.+.|++.. ..| + ...+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -----CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 34455555544433221 11124456667777788888888888887652 112 1 2677888
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
..++...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 8889999999999999999999999999999999999999999999999999998754
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=3e-06 Score=77.46 Aligned_cols=113 Identities=8% Similarity=-0.169 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFF 489 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 489 (588)
+...+..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456667777778888888888888888764 2335677777888888888888888888765 3444 4667777777
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
++...|++++|+..+++++++.|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 7888888888888888888887776555444444333
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=7e-06 Score=80.54 Aligned_cols=163 Identities=7% Similarity=-0.141 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHhccCCchHHHHHHHHHhhhhc---CCCC-ChHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVG-LMPDE----ITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSP-KLKH 451 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 451 (588)
+..++..|...|++++|.+.+..+.+.- -.++. .+...+...+...|+++.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667788888888888888887765421 11222 123334445566788999998888765421 2222 2567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC---CC----Cc
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-------MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDP---QD----SG 516 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~----~~ 516 (588)
+..++..|...|++++|..+++++. .++ ....+...+..|...|++++|...+++++...| .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7889999999999999999988762 122 245777888889999999999999999886543 22 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466778888899999999998887754
No 174
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=2e-06 Score=67.68 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=59.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----C----HhHHHH
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA----D----VVVWGA 486 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~----~~~~~~ 486 (588)
+..+...+.+.|++++|+..|+++.+. .|.+...|..+..+|...|++++|++.+++.. ..| + ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 444555555556666666666655542 12335555556666666666666666655441 111 1 234556
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
+..++...|++++|+..++++++..| ++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 66677788888888888888888877 444443
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.8e-06 Score=81.22 Aligned_cols=147 Identities=12% Similarity=-0.019 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (588)
..+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34556666667777777777777776653 344321 22233333332211 1 1367778888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HccCChHHHH
Q 007818 459 LGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY-RDSNMWEEAG 535 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 535 (588)
|.+.|++++|.+.++++ ...| +...+..+..++...|++++|+..+++++++.|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 2334 5677888888888888999999999999888888888888888774 4556777888
Q ss_pred HHHHHHHhcC
Q 007818 536 KVRKMMEERG 545 (588)
Q Consensus 536 ~~~~~~~~~~ 545 (588)
++|+++....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888876554
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=3.8e-06 Score=64.18 Aligned_cols=100 Identities=16% Similarity=0.016 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHhHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA---DVVVWGALFF 489 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~ 489 (588)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666667777777777666653 23345566667777777777777777776652 223 4566667777
Q ss_pred HHHhh-CCHHHHHHHHHHHhccCCCCC
Q 007818 490 ACRLH-GNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 490 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 788888888888888777654
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=2.9e-06 Score=66.12 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=68.6
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 493 (588)
+..+...+.+.|++++|...++++.+. .+.+...|..+..++...|++++|+..++++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555667778888888888887763 2445777777888888888888888888776 2344 56677777778888
Q ss_pred hCCHHHHHHHHHHHhccCCCCC
Q 007818 494 HGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888654
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=6.2e-06 Score=65.05 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHH
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKL---KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFA 490 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~ 490 (588)
+...+...|++++|...|+.+.+.. +.+. ..+..++.++.+.|++++|.+.++++. ..|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455666777777777777776641 2222 466667777777788888877777652 2232 4566777777
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
+...|++++|...++++++..|+++.+......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 888899999999999999998887665554443
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=4.7e-06 Score=65.76 Aligned_cols=95 Identities=8% Similarity=0.009 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-------SGIYVL 520 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~ 520 (588)
..+..++..+...|++++|...++++. .+.+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345555666666666666666666542 12245555556666666666666666666666665544 555666
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++.++...|++++|.+.++++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666554
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=3.9e-06 Score=69.20 Aligned_cols=129 Identities=14% Similarity=0.008 Sum_probs=79.5
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHh
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAA----DVV 482 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~ 482 (588)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555555432110111 1345556666666666666666666541 011 133
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQ------DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+..+...+...|++++|...++++++..+. .+.++..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566666777788888888888887765321 245678889999999999999999998865
No 181
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=1.7e-06 Score=81.37 Aligned_cols=136 Identities=14% Similarity=-0.010 Sum_probs=84.9
Q ss_pred CCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCc----------------ccHHHH
Q 007818 25 SKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN----------------FTYPLL 85 (588)
Q Consensus 25 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l 85 (588)
.+++++|...++... +.+...|..+...+.+.|++++|+..|++... +.|+. ..|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHH
Confidence 455666666665543 33566788899999999999999999999987 34543 455666
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChh
Q 007818 86 FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 162 (588)
..++.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|++ +.+.+..++..+...+.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666654 23445555555555555555555555554 22334444555555555555555
Q ss_pred HH
Q 007818 163 EA 164 (588)
Q Consensus 163 ~a 164 (588)
++
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=6.9e-05 Score=68.87 Aligned_cols=178 Identities=8% Similarity=-0.005 Sum_probs=98.4
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-hHHHHHHHH
Q 007818 364 AKALQVFHEMPE---RNSLTYTAIIGGLALHG--KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL-VDEGRKYFA 437 (588)
Q Consensus 364 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~ 437 (588)
++++.+++.+.. ++..+|+.-...+...+ .+++++.+++.+.+.. +-|...|+.-..++...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 23444544444444444 2566666666666543 3344555555555555555 466666666
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhc--------------CChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh-------
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRS--------------GLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH------- 494 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------- 494 (588)
.+.+. .+-+...|+.....+.+. +.++++++.+.... ..| |...|.-+-..+...
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 66653 234455555544444433 33555666665542 233 444554443333332
Q ss_pred ----CCHHHHHHHHHHHhccCCCCCchHHHHHHHH---HccCChHHHHHHHHHHHhc
Q 007818 495 ----GNVSIGERAAMKLLELDPQDSGIYVLLANMY---RDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 544 (588)
+.++++++.+.++++..|++..++..++... ...|..++....+.++.+.
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467888888888889998766555544322 2467788888888888764
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=4.6e-06 Score=79.33 Aligned_cols=90 Identities=10% Similarity=-0.051 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...|..+..+|.+.|++++|.+.++++ ...| +...+..+..++...|++++|+..+++++++.|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999886 4445 5778888899999999999999999999999999999999999999
Q ss_pred HccCChHHHHHH
Q 007818 526 RDSNMWEEAGKV 537 (588)
Q Consensus 526 ~~~g~~~~A~~~ 537 (588)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=1.1e-06 Score=68.23 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred CCchHHHHHHHHHhhhhcC--CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|.+.++++. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 57788888888888763 2 13345677788888888999999998888762 334 5667788888888999999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 007818 502 RAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~ 519 (588)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876544
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=2.7e-06 Score=70.44 Aligned_cols=78 Identities=15% Similarity=0.010 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC-chHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS-GIYVLLANM 524 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 524 (588)
+...|..+..+|.+.|++++|...++++ ...| +...+..+..++...|++++|+..++++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567888889999999999999999876 3344 577888899999999999999999999999999887 555555544
Q ss_pred H
Q 007818 525 Y 525 (588)
Q Consensus 525 ~ 525 (588)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=3.8e-05 Score=77.28 Aligned_cols=169 Identities=7% Similarity=-0.057 Sum_probs=132.7
Q ss_pred ChhHHHHHhccCCCC---CcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-
Q 007818 362 NIAKALQVFHEMPER---NSLTYTAIIGGLALHGK----------ALDAISYFSEMIGVGLMPDEITFLGILSACCHGG- 427 (588)
Q Consensus 362 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 427 (588)
..++|.+.++.+... +..+|+.-..++...|+ +++++..++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345667777776642 34456665556655565 899999999998864 456678888888888888
Q ss_pred -chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh---------
Q 007818 428 -LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG-LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH--------- 494 (588)
Q Consensus 428 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------- 494 (588)
+++++.+.++++.+. .+-+...|+.-..++.+.| .++++.+.++++. ..| +...|......+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999984 3556888888888888888 8999999998874 445 677888777776553
Q ss_pred -----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHH
Q 007818 495 -----GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 495 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (588)
+.++++++.+.++++.+|+|..+|..+.+++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.21 E-value=6.5e-06 Score=61.50 Aligned_cols=65 Identities=25% Similarity=0.162 Sum_probs=59.6
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...+..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888999999999999999999999999999999999999999999999999998764
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=7.1e-06 Score=80.47 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=92.8
Q ss_pred hccCCchHHHHHHHHHhhhhc--CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIF--RLSP----KLKHYSCMVDLLGRSGLLEEAEQLIRSM---------PMAAD-VVVWGA 486 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~ 486 (588)
+...|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446788888888777765531 1112 2567788888888889988888888765 12344 447788
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 487 LFFACRLHGNVSIGERAAMKLLE-----LDPQDSGI---YVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...|...|++++|+.+++++++ ++|++|.+ ...+..++..+|++++|..++.+++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999876 56877665 457888889999999999999999764
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=7.7e-07 Score=68.16 Aligned_cols=93 Identities=12% Similarity=-0.017 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYV 519 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 519 (588)
+...+..+...+.+.|++++|.+.+++.. ..| +...+..+..++...|++++|+..+++++++.|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667778888888888888888888762 333 57778888888899999999999999999999988 77788
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 007818 520 LLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=6.7e-05 Score=68.95 Aligned_cols=184 Identities=8% Similarity=0.001 Sum_probs=136.0
Q ss_pred hcCChh-HHHHHhccCCCCCcc---hHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 359 KCGNIA-KALQVFHEMPERNSL---TYTAIIGGLALHGK----------ALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 359 ~~~~~~-~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
+.|.+. +|++.++.+...|+. +|+.--..+...+. +++++.+++.+.... +-+..+|..-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344444 677777776644333 34433333322222 578899999988864 456677877777776
Q ss_pred cCC--chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-hHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh-----
Q 007818 425 HGG--LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL-LEEAEQLIRSMP-MAA-DVVVWGALFFACRLH----- 494 (588)
Q Consensus 425 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~----- 494 (588)
..+ +++++..+++++.+. .+-+...|+.-..++...|. ++++++.++++. ..| +...|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 667 489999999999984 45678888888888888888 589999988873 334 677787777666554
Q ss_pred ---------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc-----------CChHHHHHHHHHHHhcC
Q 007818 495 ---------GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS-----------NMWEEAGKVRKMMEERG 545 (588)
Q Consensus 495 ---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 545 (588)
+.+++++..+.+++..+|+|..+|+.+-+++.+. +.++++++.++++.+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4588999999999999999999999988888877 56899999999998754
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.12 E-value=8.3e-06 Score=76.69 Aligned_cols=151 Identities=12% Similarity=-0.032 Sum_probs=83.2
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
..+..+...+.+.|++++|...|++....++... .+...++..++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4467788889999999999999988664222211 1223334444433221 136778888999999
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHHH-HHhhCCHHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFFA-CRLHGNVSIGERAA 504 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~-~~~~~~~~~A~~~~ 504 (588)
++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++. ..|+ ...+..+... ....+..+.+...+
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 34567889999999999999999999999873 4564 3344444444 23456778889999
Q ss_pred HHHhccCCCCC
Q 007818 505 MKLLELDPQDS 515 (588)
Q Consensus 505 ~~~~~~~p~~~ 515 (588)
+++++..|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99999999765
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.08 E-value=2.7e-05 Score=62.14 Aligned_cols=112 Identities=10% Similarity=-0.095 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERA 503 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 503 (588)
++++|.++|++..+. + .|... |...|...+..++|.++|++.....++.....+...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 445555555555543 2 12211 444444545555555555554333445555555555555 5677777777
Q ss_pred HHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcCCc
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 547 (588)
++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 7777665 456777788888877 77888888888888776643
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=6.3e-06 Score=66.09 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC-HhHH----HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSM-PM-------AAD-VVVW----GALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777888888888877777665 23 675 5577 888899999999999999999999999998877
Q ss_pred HHHHHH
Q 007818 518 YVLLAN 523 (588)
Q Consensus 518 ~~~l~~ 523 (588)
..-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 665543
No 194
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.07 E-value=2.3e-05 Score=57.12 Aligned_cols=69 Identities=14% Similarity=0.009 Sum_probs=59.5
Q ss_pred CCHhHHHHHHHHHHhhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 479 ADVVVWGALFFACRLHGN---VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
+++..+..+..++...++ .++|...++++++.+|+++.++..++..+.+.|++++|+++|+++.+...+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777655444 699999999999999999999999999999999999999999999887644
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=1.3e-05 Score=61.68 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 468 AEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 468 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|.+.+++. ...| +...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444443 2233 45566666666777777777777777777777777777777777777777777777777776553
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=5.4e-05 Score=74.15 Aligned_cols=159 Identities=9% Similarity=-0.020 Sum_probs=116.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPD----------------EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (588)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888776432211 124677889999999999999999998764332222
Q ss_pred h----HHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC-----
Q 007818 449 L----KHYSCMVDLLGRSGLLEEAEQLIRSMP-------MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD----- 511 (588)
Q Consensus 449 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 511 (588)
. .+.+.+...+...|++++|.++++... ..+ ...++..++..+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 223344455567789999999887651 223 35577888889999999999999999987542
Q ss_pred -CCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 512 -PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 512 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788899999999999999999998864
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=1.8e-05 Score=65.07 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDE----ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LK 450 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 450 (588)
++..+...+...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 345555666666666766666666544210 0111 25666677777778888888777776553111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----C-CC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-----M-AA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+..+...+...|++++|.+.+++.. . .+ ....+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677777888888888888877652 1 11 234566677778888999999999988877544
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=1.7e-05 Score=57.78 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556666777777777777777776652 223 45667777777778888888888888888888888888888877776
Q ss_pred ccC
Q 007818 527 DSN 529 (588)
Q Consensus 527 ~~g 529 (588)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=1.6e-05 Score=75.51 Aligned_cols=112 Identities=9% Similarity=0.016 Sum_probs=81.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhHHHHHHHHHHh
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRL 493 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 493 (588)
.+..+...+.+.|++++|++.|+++.+.. +... .....+++. ...| +...+..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 45555666666667777776666665420 0000 000111110 0123 45678888889999
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.|++++|+..++++++++|+++.++..++.+|...|++++|++.++++.+..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998754
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=3.8e-05 Score=75.55 Aligned_cols=97 Identities=11% Similarity=-0.079 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----------------HhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----------------VVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
...+..+...|.+.|++++|...|+++. ..|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3445555666666666666666666542 1121 5678888899999999999999999999999
Q ss_pred CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+++.+|..++.+|...|++++|+..|+++.+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998764
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=4.6e-06 Score=66.76 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
+.+++|.+.++...+. -+.+...|..+..++...|+++.+.+.+ +.+++|+..+++
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~le~ 71 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHHHH
Confidence 4455555555555542 1334555555555555555444333221 126789999999
Q ss_pred HhccCCCCCchHHHHHHHHHccC-----------ChHHHHHHHHHHHhcCC
Q 007818 507 LLELDPQDSGIYVLLANMYRDSN-----------MWEEAGKVRKMMEERGV 546 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 546 (588)
+++++|+++.+|..++.+|...| ++++|++.|+++.+.+.
T Consensus 72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999998875 89999999999987653
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=2.6e-05 Score=59.40 Aligned_cols=67 Identities=10% Similarity=-0.111 Sum_probs=61.7
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|++.++++.+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567788888899999999999999999999999999999999999999999999999999987643
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=3.5e-05 Score=75.57 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=87.9
Q ss_pred HHHHhcCChHHHHHHHHhCC---------CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCc---hH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP---------MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSG---IY 518 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~ 518 (588)
..+..+|++++|+.++++.- ..|+ ..+++.++.+|...|++++|+.+++++++ +.|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999987651 2243 45788899999999999999999999986 4566655 47
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (588)
+.|+.+|..+|++++|..+++++.+--. ...|. +||.+.++..+|.+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-----------------~~lG~-~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-----------------VTHGP-SHPITKDLEAMRMQTE 445 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCT-TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------HHhCC-CChHHHHHHHHHHHHH
Confidence 8899999999999999999999976321 12333 5999999998888765
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.0002 Score=72.03 Aligned_cols=152 Identities=9% Similarity=0.000 Sum_probs=124.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCc----------hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 392 GKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGL----------VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.++++.+.+ ..+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3457889999999985 454 4566665555555555 8999999999998 44567888998888999
Q ss_pred hcC--ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc-------
Q 007818 461 RSG--LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHG-NVSIGERAAMKLLELDPQDSGIYVLLANMYRDS------- 528 (588)
Q Consensus 461 ~~g--~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 528 (588)
+.| +++++++.++++- ..| +...|..-.......| .++++++.+.++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999883 344 6778888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhcCCc
Q 007818 529 -------NMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 529 -------g~~~~A~~~~~~~~~~~~~ 547 (588)
+.+++|+++++++......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999998875543
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.84 E-value=2.3e-05 Score=73.44 Aligned_cols=410 Identities=9% Similarity=-0.016 Sum_probs=248.8
Q ss_pred cCCchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 007818 8 SHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87 (588)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (588)
..+.+|+.|..++. ..|.+.+|+.-| ++..|+..|..+|.+..+.|.+++-+..+...++ . .-++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL--~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQL--QKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTT--TSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHH--ccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHHH
Confidence 35677888888888 778888888776 4466777888999999999999999988877665 3 334444557888
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC------------------------CC
Q 007818 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC------------------------VR 143 (588)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~ 143 (588)
+|++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|..+. ..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999888776544432 3677667778888888888888888876531 24
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 223 (588)
++.+|..+-.+|...+.+.-|.-.--.++- .|| ....++..|-..|-+++-..+++..... -.....+|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 778899988899988888766555444432 222 2345667778888888888888766532 1245677888887
Q ss_pred HHHhcCChhHHHHHHHhcCCC-----------CcchHHHHHHHHHhcCCHHHHHHHhhhC-------------C--CCCc
Q 007818 224 MYVKCGKLESAEEIFDSMVNK-----------TVVSCTTMIVGYAKFGFLDIARKIFDDL-------------P--EKYV 277 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------------~--~~~~ 277 (588)
.|++- ++++..+.++..-.+ ....|..++-.|.+-.+++.|....-.- . -.+.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchH
Confidence 77765 566666666655322 4456888888888888888665432111 1 1233
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh----------CCCCcc
Q 007818 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE----------NFNLNV 347 (588)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~ 347 (588)
..|...|..|.... |. ..+-++.++...=|...+.++++..-.. -...+.
T Consensus 351 EiyYKAi~FYL~e~------------------P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~ 410 (624)
T 3lvg_A 351 ELYYRAIQFYLEFK------------------PL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK 410 (624)
T ss_dssp HHHHHHHHHHTTSC------------------CT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCH
T ss_pred HHHHHHHHHHHHhC------------------hH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHH
Confidence 33444444443322 21 1222333332222222222222211000 001123
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCC------------CcchHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPER------------NSLTYTAI-IGGLALHGKALDAISYFSEMIGVGLMPDEI 414 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 414 (588)
.+-.++-+.|....+++.-..-.+....- +..-|..+ ...|.+++++.+++.+.++ ..
T Consensus 411 aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------Dk 481 (624)
T 3lvg_A 411 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DS 481 (624)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cc
Confidence 33445556677777766555544433221 22223222 3345666777776655421 12
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
.|.-.+.....+|+.+-+.++++-..+. -+...|.+.+-.+...=+++-++++
T Consensus 482 lykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 LYKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CTTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 2333455566778888888888887775 3455666666666666667777766
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00025 Score=56.37 Aligned_cols=112 Identities=12% Similarity=-0.039 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEE 467 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 467 (588)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -++.....|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 45544 677787878889999999999885 467778888888888 789999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCC
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 512 (588)
|.++|++....-++.....+...|.. .+++++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988655678888888888888 8899999999999998754
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=6.8e-05 Score=54.50 Aligned_cols=66 Identities=24% Similarity=0.237 Sum_probs=60.5
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.++++.+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355777788889999999999999999999999999999999999999999999999999998753
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.76 E-value=6.4e-05 Score=72.44 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=76.2
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCc---hHHHHH
Q 007818 461 RSGLLEEAEQLIRSM---------PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSG---IYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 522 (588)
..|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++ +.|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346667777766654 11233 34677788888888888888888888875 4566555 488999
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHH
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
.+|..+|++++|..+++++.+--. ...|. +||.+.++.+.|++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~-----------------~~lG~-~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME-----------------VAHGK-DHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCT-TCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH-----------------HHcCC-CChHHHHHHHHHhc
Confidence 999999999999999999976321 12333 59999999988764
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=9.5e-05 Score=56.72 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
.|...++++.+ ..+.+...+..++..|...|++++|.+.+++.. ..| +...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666665 233456677777777777777777777777652 233 45677777777788888888888888888
Q ss_pred ccCCC
Q 007818 509 ELDPQ 513 (588)
Q Consensus 509 ~~~p~ 513 (588)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77764
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=2.8e-05 Score=62.23 Aligned_cols=126 Identities=10% Similarity=-0.010 Sum_probs=85.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch----------HHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV----------DEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
..+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+. -+.....|..+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 345677999999999998864 55677888888888888765 4788888887764 1234667777777
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
+|...|.+ .|+.. ...|++++|+..|+++++++|++......+- ..++|-++
T Consensus 89 ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el 140 (158)
T 1zu2_A 89 AYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQL 140 (158)
T ss_dssp HHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHH
T ss_pred HHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhc
Confidence 77766643 33331 1137899999999999999998753333322 23445555
Q ss_pred HHHHHhc
Q 007818 538 RKMMEER 544 (588)
Q Consensus 538 ~~~~~~~ 544 (588)
.-.+...
T Consensus 141 ~~~~~~~ 147 (158)
T 1zu2_A 141 HAEAYKQ 147 (158)
T ss_dssp HHHHHHS
T ss_pred cCccccc
Confidence 5544443
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.61 E-value=0.0003 Score=67.91 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=86.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC------CCC---C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCc---h
Q 007818 456 VDLLGRSGLLEEAEQLIRSMP------MAA---D-VVVWGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSG---I 517 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~------~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~ 517 (588)
+..+.+.|++++|++++++.- ..| + ..+++.++.+|...|++++|+.+++++++ +.|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667889999988887651 112 2 44778888889999999999999999885 3466655 4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHh
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (588)
++.|+.+|..+|++++|..+++++.+--. ...|. +||...+++..|.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-----------------~~lG~-~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-----------------VTHGR-EHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCT-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HhcCC-CChHHHHHHHHHHHHHH
Confidence 78899999999999999999999976311 12333 59999999998887653
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.00017 Score=53.46 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=52.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 455 MVDLLGRSGLLEEAEQLIRSMP-MAA-DVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
.+..+.+.|++++|.+.++++. ..| +.. .+..+..++...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556667777778777777652 233 455 66777777777778888888888887777777666532 444
Q ss_pred HHHHHHHHHH
Q 007818 532 EEAGKVRKMM 541 (588)
Q Consensus 532 ~~A~~~~~~~ 541 (588)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=0.00012 Score=54.34 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=38.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSG-IYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+...|++++|+..++++++..|+++. ++..++.+|...|++++|.+.++++.+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455666777777777777777776666 66667777777777777777776666543
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.30 E-value=9e-06 Score=76.12 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=157.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
.+.+|..|..+..+.+.+.+|++-|-+ ..|+..|..++....+.|.++.-+..+...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 455777788888888877777765543 3466778888888889999998888887666553 233444578888888
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhC
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 272 (588)
.++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+..- ..|..++.+.|++..|.+.-+.
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-----akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-----GRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC-----TTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH-----HHHHHHHHHHHHHHHHHHHHHh-
Confidence 88877665554 2466666678888888888888888887776331 1122223333333333222211
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHH
Q 007818 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352 (588)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (588)
..++.+|-.+..+|...+.+.-|.-.--.++- .|| .+..++..|...|.+++-+.+++.-... -.....+|+.
T Consensus 196 -Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTE 268 (624)
T 3lvg_A 196 -ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTE 268 (624)
T ss_dssp -CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHH
T ss_pred -cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHH
Confidence 24566677777777777776655444333332 121 1223444556666666666666554421 1335556666
Q ss_pred HHHHhHhcCChhHHHHHhccCCC----C-------CcchHHHHHHHHHhcCChHHHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPE----R-------NSLTYTAIIGGLALHGKALDAI 398 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 398 (588)
|.-.|++- ++++..+.++..-. | ....|.-++-.|.+-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66666654 45555555554332 1 3445666666666666666553
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.00096 Score=64.28 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=69.1
Q ss_pred cCCchHHHHHHHHHhhhhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIF--RLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSM---------PMAAD-VVVWGALF 488 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 488 (588)
..|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467888888887765531 12222 467788888888899999888888776 12344 44788888
Q ss_pred HHHHhhCCHHHHHHHHHHHhc-----cCCCCCchHH
Q 007818 489 FACRLHGNVSIGERAAMKLLE-----LDPQDSGIYV 519 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~ 519 (588)
..|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 889999999999999999876 5687776544
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.00079 Score=49.88 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555666666666666555542 22334555555555566666666666555544
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0095 Score=54.98 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=33.7
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++..+..+...+...|++++|...++++++++| +...|..+++++.-.|++++|.+.++++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444444445555555555555555554 3344445555555555555555555555443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0022 Score=59.13 Aligned_cols=139 Identities=14% Similarity=0.051 Sum_probs=97.4
Q ss_pred CCCcchHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc---CC-ch-HHH---HHHHHHhh
Q 007818 375 ERNSLTYTAIIGGLA--LHGK---ALDAISYFSEMIGVGLMPDE-ITFLGILSACCH---GG-LV-DEG---RKYFAQMS 440 (588)
Q Consensus 375 ~~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~~ 440 (588)
..+...|...+++.. ..++ ..+|..+|++.++. .|+. ..+..+..++.- .+ .. ... .+.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 347788888876643 3333 57899999999985 5653 456655555542 11 11 111 11222221
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.....+.++..|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11133667888888888888889999999999987 3568888888888889999999999999999999999654
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.11 E-value=0.0022 Score=61.84 Aligned_cols=101 Identities=18% Similarity=-0.030 Sum_probs=71.9
Q ss_pred HHHhccCCchHHHHHHHHHhhhhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HhH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIF--RLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAAD-VVV 483 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 483 (588)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++- ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888888776431 12222 4667788888888888888888887651 2343 446
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSGIYVL 520 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~ 520 (588)
++.+...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 78888889999999999999998875 56888766544
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.08 E-value=0.0023 Score=56.48 Aligned_cols=86 Identities=13% Similarity=0.048 Sum_probs=67.0
Q ss_pred HHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----hCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHcc-CChHHH
Q 007818 466 EEAEQLIRSM-PMAAD---VVVWGALFFACRL-----HGNVSIGERAAMKLLELDPQD-SGIYVLLANMYRDS-NMWEEA 534 (588)
Q Consensus 466 ~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 534 (588)
.+|...+++. ...|+ ...+..+...|.. .|+.++|.+.|+++++++|+. ..++..++..+++. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555555554 34554 4466666666766 489999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhcCCccCCc
Q 007818 535 GKVRKMMEERGVEKTPG 551 (588)
Q Consensus 535 ~~~~~~~~~~~~~~~~~ 551 (588)
.+++++..+.+....|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999999987774454
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.02 E-value=0.0048 Score=45.94 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+......++..+.+.|++..|...++.+. ..+....+..+..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666667777777766666541 113456778888889999999999999999999999988876
Q ss_pred HHHH
Q 007818 519 VLLA 522 (588)
Q Consensus 519 ~~l~ 522 (588)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6664
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.97 E-value=0.033 Score=42.14 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=98.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|..++..++..+.... .+..-++.++--....-+=+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567778888887777663 34555666665555555555556666665443221 23455555
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
....+-.+. .+...+...+.....+|..++-..++..++...|.+|..+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555544442 234455556677789999999999999988777778999999999999999999999999999999976
Q ss_pred c
Q 007818 548 K 548 (588)
Q Consensus 548 ~ 548 (588)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.89 E-value=0.0023 Score=50.51 Aligned_cols=92 Identities=14% Similarity=-0.058 Sum_probs=69.7
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--CHhHHHHHHHHHHhhCCHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG---LLEEAEQLIRSMP-MA-A--DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~ 499 (588)
+....+++-|.+.... + +++..+...+..++++.+ +.+++..++++.- .. | ....+-.+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4566777777777663 3 478888888899999988 6668998888762 23 4 34566667777899999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 007818 500 GERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~ 520 (588)
|.+.++.+++.+|+|..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999987655543
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.88 E-value=0.0041 Score=49.13 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC---chHHHHHHHHHhhhhcCCCC--ChHHHHHHHHHHHhcCChHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSP--KLKHYSCMVDLLGRSGLLEEAEQ 470 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 470 (588)
.+.+.|.+..+.| .++..+...+..++++++ +.++++.+++.+.+. . .| ....+..|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444433 244444444444455444 344555555555443 1 12 23334444445555555555555
Q ss_pred HHHhC
Q 007818 471 LIRSM 475 (588)
Q Consensus 471 ~~~~~ 475 (588)
+++.+
T Consensus 93 y~~~l 97 (152)
T 1pc2_A 93 YVRGL 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.76 E-value=0.0053 Score=45.70 Aligned_cols=66 Identities=11% Similarity=-0.128 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELD-------PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.....++..+...|++..|+..++++++.. +..+.++..|+.+|.+.|++++|+.+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34455678888999999999999999998753 3356679999999999999999999999998754
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.086 Score=56.02 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=109.8
Q ss_pred HHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 287 YVQAKRSKEALA-LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 287 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
....+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345667777665 4411 1 1122225555666667777777665421 1 111334567789999
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 366 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+..... +
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence 999887764 457889999999999999999999887643 333444444466666655555544442 1
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLA 522 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 522 (588)
+ ++.-..+|.+.|++++|.+++.++ +++++|..+.++ ..|.. +.+...+.
T Consensus 738 --~---~~~A~~~~~~~g~~~~a~~~~~~~-------------------~~~~~A~~lA~~---~~~~~~~i~~~~~~~~ 790 (814)
T 3mkq_A 738 --K---FNLAFNAYWIAGDIQGAKDLLIKS-------------------QRFSEAAFLGST---YGLGDNEVNDIVTKWK 790 (814)
T ss_dssp --C---HHHHHHHHHHHTCHHHHHHHHHHT-------------------TCHHHHHHHHHH---TTCCHHHHHHHHHHHH
T ss_pred --c---hHHHHHHHHHcCCHHHHHHHHHHc-------------------CChHHHHHHHHH---hCCChHHHHHHHHHHH
Confidence 1 233344566677777777766544 456666665543 33322 13444455
Q ss_pred HHHHccCChH
Q 007818 523 NMYRDSNMWE 532 (588)
Q Consensus 523 ~~~~~~g~~~ 532 (588)
..+...|+.+
T Consensus 791 ~~L~~~~~~~ 800 (814)
T 3mkq_A 791 ENLILNGKNT 800 (814)
T ss_dssp HHHHTTTCHH
T ss_pred HHHHhccchh
Confidence 5555566543
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.65 E-value=0.019 Score=41.45 Aligned_cols=70 Identities=7% Similarity=-0.020 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 446 SPKLKHYSCMVDLLGRSGL---LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|++++|+..|+++++..|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4567777777777765444 68888888876 3445 566777777788889999999999999999988743
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.041 Score=58.52 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=99.9
Q ss_pred HHHHHhCCChHHHHH-HHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 007818 50 IRGFLETGKMREAVD-LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (588)
.......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+... .-.......|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcC
Confidence 344556788888876 542221 11223667777778888888876653211 1134456789
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+.+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988774 567899999999999999999999998753 34455555556666665555554444
Q ss_pred hCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
.|. ++....+|.+.|++++|.+++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 23344455556666666655544
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.42 E-value=0.93 Score=45.63 Aligned_cols=114 Identities=12% Similarity=-0.043 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDEI----TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
++++.|...+....+.. ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776533 22332 2333343444555345666666654432 2333334444455557788888
Q ss_pred HHHHHHhCCCCC-C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 468 AEQLIRSMPMAA-D-VVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 468 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...|+.++..+ + ....-=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888886442 1 22111233355677888888888888875
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.96 E-value=0.069 Score=40.46 Aligned_cols=90 Identities=13% Similarity=-0.037 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--CHhHHHHHHHHHHhhCCHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE---AEQLIRSMP-MA-A--DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
...+.+-+...... + .++..+-..+..++++..+... ++.+++.+- .. | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555443 3 2666666667777777766555 667776653 22 3 2234445556688899999999
Q ss_pred HHHHHHhccCCCCCchHHH
Q 007818 502 RAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~ 520 (588)
+.++.+++..|+|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999988766543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.22 Score=40.44 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=88.5
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
..|+++.|.++.+.+ .+...|..|.+...++|+++-|.+.|.+... +..+.-.|...|+.++..++-+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHH
Confidence 678999999987765 4677899999999999999999999988754 5666666777888887777666
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHh
Q 007818 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 171 (588)
.....| -++.....+...|+++++.++|.+.... ....-.....|..+.|.++.+++
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 666655 2455556666788999988888765431 11112222356666777776665
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.5 Score=38.30 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 007818 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 223 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
......|+++.|.++.+.+ .+...|..+.......|+++-|+++|....+ +..+.-.|...|+.+...++-+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445667777776666655 3445566666666666666666666665544 45555555566666555555444
Q ss_pred HHHC
Q 007818 303 MQAT 306 (588)
Q Consensus 303 ~~~~ 306 (588)
....
T Consensus 86 A~~~ 89 (177)
T 3mkq_B 86 AQTR 89 (177)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 4443
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.64 E-value=1.2 Score=40.16 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=114.2
Q ss_pred hhhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHH----HH
Q 007818 95 RFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL----FR 169 (588)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~ 169 (588)
+++...-++.-++.|--- -...|.++..-|.+.+++++|++++... ...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 344444444444444111 1235666677788899999999887653 3445666777666654 45
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChh-HHHHHHHHHH----HhCC--CCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLN-LGREIHWYIS----ESGL--TLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
-..+.+++++......++..+.....-+ .-.++++.++ +.|- .-++..+..+...|.+.|++.+|...|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788888888888887776643211 2233444443 3332 2367888999999999999999998887433
Q ss_pred CCCcchHHHHHHHHHhc---CCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 243 NKTVVSCTTMIVGYAKF---GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305 (588)
Q Consensus 243 ~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 305 (588)
..++..+..++.-+... |...++.-.. ...+-.|...++...|..+++...+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33556666665555544 4443332221 1223345566777777777776543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.55 E-value=0.16 Score=39.52 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=39.3
Q ss_pred hcCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 461 RSGLLEEAEQLIRSMP---MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..++.++|.++|+.+. .+. +..|.....--.++|+...|.+++.+++...|.+...+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3366667777766651 122 555555555566788888888888888888886554444433
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.47 E-value=3.1 Score=43.75 Aligned_cols=163 Identities=12% Similarity=-0.000 Sum_probs=72.5
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCcchHHH--HHHHHhHhcCChhHHHHHhccCCC-CCcc-hHH---HHHHHHHhcCCh
Q 007818 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMPE-RNSL-TYT---AIIGGLALHGKA 394 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~ 394 (588)
+...|+.+....++..+.+.. +..+.. .+.-++...|+.+.+..+++.+.. .++. -|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345555555556655554321 112222 222233345666666555555442 2221 122 233445566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh-HHHHHHHH
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL-EEAEQLIR 473 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 473 (588)
....++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .++.+.+.
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 55555666665531 11222222222233344555555555555544 2234333333344444444433 45666666
Q ss_pred hCCCCCCHhHHHHHHHH
Q 007818 474 SMPMAADVVVWGALFFA 490 (588)
Q Consensus 474 ~~~~~~~~~~~~~l~~~ 490 (588)
.+...++..+-...+.+
T Consensus 654 ~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHTCSSHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHH
Confidence 66544554444333333
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.071 Score=54.63 Aligned_cols=54 Identities=15% Similarity=-0.021 Sum_probs=50.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
..-|...|+++.|..+.++++...|.+-.+|..|+.+|...|+|+.|+-.++-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444678899999999999999999999999999999999999999999999877
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.34 E-value=3.4 Score=43.46 Aligned_cols=149 Identities=13% Similarity=0.005 Sum_probs=68.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHhccCCchHHHHHHHHHhhhhcCCCCChHHHH--HHHHHHHhcC
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGIL--SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS--CMVDLLGRSG 463 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g 463 (588)
+.-.|+.+....++..+.+. .+......+. -++...|+.+.+..+.+.+... ..|....-. .+.-+|+-.|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCC
Confidence 44455655555566655542 1222222222 2333556666666666666552 222222221 2334555666
Q ss_pred ChHHHHHHHHhCCCCCCHhHHHHHHHHH--HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HccCC-hHHHHHHH
Q 007818 464 LLEEAEQLIRSMPMAADVVVWGALFFAC--RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY--RDSNM-WEEAGKVR 538 (588)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~-~~~A~~~~ 538 (588)
+.....+++..+...++...-...+-+. ...|+.+.+.++++.+.+.. |+.+-...+.++ ...|+ ..+|...+
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 7666655666664333333333332222 23444444444443333221 333333322222 22333 25777777
Q ss_pred HHHHh
Q 007818 539 KMMEE 543 (588)
Q Consensus 539 ~~~~~ 543 (588)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77754
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.01 E-value=0.049 Score=41.30 Aligned_cols=68 Identities=12% Similarity=-0.075 Sum_probs=57.0
Q ss_pred CCCHhHHHHHHHHHHhhCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 478 AADVVVWGALFFACRLHGNVSI---GERAAMKLLELD-P-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++..+-..+.+++.+.++... ++.+++.+++.. | .....+..|+-++.+.|+|++|+++++.+.+..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4777788888888887776554 999999999887 5 466788899999999999999999999998753
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.98 E-value=2 Score=38.94 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHh
Q 007818 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF----RDMQLERVEPDEVTMIGMVSACA 191 (588)
Q Consensus 116 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 191 (588)
++.++..-|.+.+++++|++++-.. ...+.+.|+...+.++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556666788899999999887553 34456667776665554 55566788888888888888777
Q ss_pred ccCChh-HHHHHHHHH----HHhC--CCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 007818 192 QLEDLN-LGREIHWYI----SESG--LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 192 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (588)
....-+ .-..+++.+ .+.| ..-++.....+...|.+.+++.+|...|-.-.++++..+..++..+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 222333333 3334 334678888999999999999999988843222233566555555544433222
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 305 (588)
+--. ....+-.|...++...|...++...+
T Consensus 186 ~dlf-----------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 APLY-----------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2111 22233446667788888776666543
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.88 E-value=0.85 Score=34.71 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
.+..-++.+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 3444556666677777777777665442 3666777777777777777777777777777665 44
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.87 E-value=0.19 Score=39.09 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=46.6
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
..+|.++|.++|+.++++...=+.+|...+..-.++|+.+.|.+++.+....+..|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 44799999999999988755456778888888889999999999999998876544
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.47 E-value=0.3 Score=37.69 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLE---EAEQLIRSM-PMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
.|+..+--.+..++.++.+.. ++..+++++ ...| .....-.+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666777777776543 455666654 1223 2333444455677777888888888888887777654443
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.57 E-value=0.2 Score=38.15 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLL---EEAEQLIRSM-PMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
.|++.+--.++.++.++.+. .+++.+++++ ...| ....+--+.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 35566656667777766644 3455665554 1223 2334445555677777777777777777777777655443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.10 E-value=0.23 Score=47.12 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH-----hcCCccCCce
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-----ERGVEKTPGC 552 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 552 (588)
...++.++...|++.+++..+..++..+|-+...+..++.+|.+.|+..+|++.|+++. +.|++|.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455666788999999999999999999988899999999999999999999988874 3577776654
No 245
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.09 E-value=0.64 Score=41.17 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=39.9
Q ss_pred hHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhcc-CCchHHHHHHHHHhhhh
Q 007818 380 TYTAIIGGLAL-----HGKALDAISYFSEMIGVGLMP--DEITFLGILSACCH-GGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 380 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 442 (588)
.|..+...|.+ -|+.++|.+.|++.++. .| +..++......++. .|+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 55556666665 37777777777777764 44 25566666666666 37777777777777764
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.62 E-value=2.6 Score=32.58 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=37.4
Q ss_pred CCHhHHHHHHHHHHhhCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 479 ADVVVWGALFFACRLHGN---VSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|+..+-..+.+++.+..+ ..+++.+++.+++..|. ....+..|+-++.+.|+|++|+++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555555554443 34556666666665553 3445555666666666666666666666553
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.54 E-value=1.1 Score=34.10 Aligned_cols=65 Identities=8% Similarity=-0.060 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHhccCC---chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 410 MPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 410 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.|+..+--.+..++.++. +..+++.+++.+.+. +..-....+..|.-++.+.|++++|+++.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444444433 223455555555543 21112334444555555555555555555544
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.52 E-value=7.9 Score=35.15 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF----SEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...|..+. +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666668888888888887533 233455667765554443 55666788888888888877776
Q ss_pred cCCchH-HHHHHHHHhhh---hcC--CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHH
Q 007818 425 HGGLVD-EGRKYFAQMSS---IFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498 (588)
Q Consensus 425 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 498 (588)
....-+ .=..+.+++.+ +.+ -.-++.....+...|.+.|++.+|+..|= ...++.+..+..++..+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 554311 11222222221 112 23457778889999999999999999884 2333444666666555544433
Q ss_pred HHHHHHHHHhccCCCCCchHH-HHHHHHHccCChHHHHHHHHHHHh
Q 007818 499 IGERAAMKLLELDPQDSGIYV-LLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|.....|. ..+--|.-.|+...|...++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 234456778999999998877764
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.27 E-value=1.1 Score=35.67 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=66.7
Q ss_pred CCCCCHH--HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-------hHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 007818 408 GLMPDEI--TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-------LKHYSCMVDLLGRSGLLEEAEQLIRSMP-- 476 (588)
Q Consensus 408 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 476 (588)
|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+ ..++..+++++...|++.+|...|++.-
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445443 3444466677788888888887776554333344 2355667788888888888888887641
Q ss_pred -----CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 477 -----MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 477 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
..+...+ .+ .. ..... .-..+ +.+...-..++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~--~~-~~---~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRP--ST-GN---SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccc--cc-cc---cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0111100 00 00 00000 00111 223456677999999999999999999876
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.01 E-value=9.2 Score=35.87 Aligned_cols=57 Identities=9% Similarity=-0.095 Sum_probs=25.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--H---HHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPD--E---ITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
++..|...|++.+|.+++.++.+.=-..| . ..+..-++.|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555555555555555555443200111 1 123333444455555555555555543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.71 E-value=1.2 Score=35.41 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (588)
+.-..+..+|.+.|++++|+.+++.++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34445666777777777777777776543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.47 E-value=13 Score=35.77 Aligned_cols=34 Identities=6% Similarity=0.092 Sum_probs=23.4
Q ss_pred CCcchHHHHHHHHhHhc--CChhHHHHHhccCCCCC
Q 007818 344 NLNVVLGTALVDMYAKC--GNIAKALQVFHEMPERN 377 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 377 (588)
.++...+..++.+|... .++..+.+.|.....++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 34566778888888754 46778888887766543
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.18 E-value=1.3 Score=31.65 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.-+..+-++.+....+-|++......+++|-+.+++..|.++++.++.+-+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456777778888888899999999999999999999999999999988533 33456766664
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.56 E-value=7.8 Score=33.75 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
...+.|+.+++++....-++.. +-|...-..+++.+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455667777777766666653 445555556666777777777777766666543
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.46 E-value=11 Score=41.40 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 007818 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
++..+...+..+.+.++..-... ++..--.+..+|...|++++|.+.|++
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~k 867 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKT 867 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444445555555444433322 222223334445555555555555544
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.62 E-value=4.1 Score=41.90 Aligned_cols=52 Identities=13% Similarity=0.016 Sum_probs=38.7
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
|...|+++-|.++-++... -.+.+..+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457788888888877775 334457788888888888888888888887775
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.32 E-value=16 Score=32.85 Aligned_cols=171 Identities=10% Similarity=0.003 Sum_probs=104.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS----YFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-. +++...+.+.+++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456677778888999999887543 2344566777666555 455666778889988888888776
Q ss_pred ccCCchH-HHHHHHHHhhhh---cC--CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhh---
Q 007818 424 CHGGLVD-EGRKYFAQMSSI---FR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH--- 494 (588)
Q Consensus 424 ~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 494 (588)
.....-+ .=.++++++.+- .+ ..-++.....+...|.+.|++.+|+..|-.. ..-+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCC
Confidence 5532111 112333333211 12 2236788888999999999999999988532 111355555555554444
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|...++--.+- ..+--|.-.|+...|..+++...+.
T Consensus 182 ~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 43333222211 2233456789999999999887543
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.64 E-value=34 Score=37.63 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=72.6
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
+.+.++.++.+....+ .++..-..+.+++...|++++|.+.|++... |+..+......+ .. +.
T Consensus 824 ~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~----------~~----~~ 886 (1139)
T 4fhn_B 824 LFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVL----------RE----FQ 886 (1139)
T ss_dssp HHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSH----------HH----HH
T ss_pred HhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhh----------cc----cc
Confidence 4455555555443333 2444444566677777777777777766532 222221110000 00 00
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHhCCChhHHHHHhcc----CCCCCc----ccHHHHHHHHHhCCChhHHHHHHHHhHH
Q 007818 104 HVLKLGF--DVDMYVHNAVIHVFVSCGDLGLACNVFDE----SCVRNL----VSWNSLINGFVRSGFPREAIRLFRDMQL 173 (588)
Q Consensus 104 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 173 (588)
.+..... ..-..-|..++..+.+.+.++.+.+.-.. ..+.+. ..|..+.+.+...|++++|...+-.+..
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 0111000 01112345555566666665555544322 111111 2466667777777777777777766654
Q ss_pred CCCCCCcchHHHHHHHHhccCC
Q 007818 174 ERVEPDEVTMIGMVSACAQLED 195 (588)
Q Consensus 174 ~~~~p~~~~~~~ll~~~~~~~~ 195 (588)
... -...+..++..++..|.
T Consensus 967 ~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 967 TPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp SSS--CHHHHHHHHHHHHHHCC
T ss_pred HHH--HHHHHHHHHHHHHhCCC
Confidence 422 23445555555554443
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.33 E-value=14 Score=30.97 Aligned_cols=167 Identities=14% Similarity=0.065 Sum_probs=85.4
Q ss_pred ChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHH
Q 007818 27 NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106 (588)
Q Consensus 27 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (588)
+.+....+...+..++...-...+..+.+.+..+ +...+..+.. .++...-...+.++...++.+... .+..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~-~L~~~l 90 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK----DEDAWVRRAAADALGQIGDERAVE-PLIKAL 90 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHH-HHHHHT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHH-HHHHHH
Confidence 3444444445555667776666777777766633 3333333333 245444445556666666543333 333332
Q ss_pred HhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 007818 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (588)
+ .++..+-...+.++.+.++.+....+.+-+..++...-...+.++.+.|+.+ +...+..+.. .++...-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 2 3566666667777777776544444444455566655556666666665543 3333333332 2344444444
Q ss_pred HHHHhccCChhHHHHHHHHHH
Q 007818 187 VSACAQLEDLNLGREIHWYIS 207 (588)
Q Consensus 187 l~~~~~~~~~~~a~~~~~~~~ 207 (588)
+.++...+. +.+...+..+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHhCc-hhHHHHHHHHH
Confidence 555555544 23333333333
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.20 E-value=4.7 Score=38.03 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh----hcCCCCChHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS----IFRLSPKLKHY 452 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 452 (588)
.++..+...|++++++..+..+.... +-+...+..++.++.+.|+..+|.+.|+...+ ..|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 35556667777777777777776643 44666777888888888888888777777543 34777776653
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.88 E-value=2.9 Score=31.66 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
.-+..+-++.+....+-|++......+++|-+.+|+..|.++|+.++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 44566677777788889999999999999999999999999999998853 344556776664
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.82 E-value=7.3 Score=27.65 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=59.1
Q ss_pred CChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhH
Q 007818 93 GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 172 (588)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456788888888877553 33333344456778999999999999999999999988755 46778888887777777
Q ss_pred HCC
Q 007818 173 LER 175 (588)
Q Consensus 173 ~~~ 175 (588)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 665
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.60 E-value=5.5 Score=28.46 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=42.8
Q ss_pred hHHHHHHHHhC---CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 465 LEEAEQLIRSM---PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 465 ~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.-+.++-++.+ ..-|++....+.+.+|.+.+|+..|+++++-+...-.+...+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33444444443 355899999999999999999999999998887655545666776654
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.59 E-value=32 Score=34.60 Aligned_cols=265 Identities=8% Similarity=-0.052 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
..-+.-+..+.+.+++......+.. .+.+...--....+....|+..+|......+=..| ......+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3445556677778888888887776 44444444456667777888877777777765444 233444555555555444
Q ss_pred ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 007818 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274 (588)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (588)
.+ +....-.-+......|+...|..+...+..........++....+ ...+....... .
T Consensus 151 ~l-----------------t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~ 209 (618)
T 1qsa_A 151 KQ-----------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-G 209 (618)
T ss_dssp CS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-C
T ss_pred CC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-C
Confidence 32 222223334555666777777666666522111122222222222 12222222221 1
Q ss_pred CCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 275 KYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT----VHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 275 ~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
++... +...+.-+.+ .+.+.|...+....... ..+.... ..+.......+...++...+....... .+.
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CCh
Confidence 11111 1111222222 36778888887776543 2222222 122223334443445555555443322 233
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIG 406 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (588)
....-.+....+.|+++.|...|+.+.... ....-=+..++...|+.++|..+|+.+..
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333444445556788888888888887532 22233355566778888888888877654
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.49 E-value=27 Score=33.57 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhccCCchHHHHHHHHHhhhhc-CCCCC----hH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGV--GLMPD---EITFLGILSACCHGGLVDEGRKYFAQMSSIF-RLSPK----LK 450 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~ 450 (588)
...|...+...|++.+|..++..+... |..+. ...+...++.|...+++.+|..+++++.... ...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999997642 22211 1256667888999999999999999875321 22222 24
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.+...+..+...+++.+|-..|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5667788888899999998887665
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.42 E-value=7.9 Score=27.55 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhH
Q 007818 93 GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 172 (588)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|... +.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 466788888888877553 333333444567789999999999999999999999887653 5677777777777776
Q ss_pred HCC
Q 007818 173 LER 175 (588)
Q Consensus 173 ~~~ 175 (588)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.54 E-value=2.2 Score=37.12 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=25.4
Q ss_pred HhcCChHHHHHHHHh-CCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 460 GRSGLLEEAEQLIRS-MPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
.+.|.+++|++.... ++.+| |...-..++.-++-.|++++|.+-++-..+++|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 344555555544432 22333 3334444444455555555555555555555553
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.54 E-value=9.9 Score=27.02 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
.++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555442 11111122345678899999999999999889888877654 4667778888777777777
Q ss_pred CCCCCHHHHHH
Q 007818 408 GLMPDEITFLG 418 (588)
Q Consensus 408 ~~~p~~~~~~~ 418 (588)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.88 E-value=20 Score=29.96 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=8.6
Q ss_pred CChhHHHHHHHHHHhCCC
Q 007818 112 VDMYVHNAVIHVFVSCGD 129 (588)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~ 129 (588)
++..+-...+..+.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 444444444444544444
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.82 E-value=11 Score=26.89 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
.++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555554432 11111122345678899999999999998888888877654 3567777777777777776
Q ss_pred CCCCCHHHHH
Q 007818 408 GLMPDEITFL 417 (588)
Q Consensus 408 ~~~p~~~~~~ 417 (588)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55555544
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.56 E-value=23 Score=29.21 Aligned_cols=17 Identities=12% Similarity=-0.169 Sum_probs=6.7
Q ss_pred ChhhHHHHHHHHHhcCC
Q 007818 214 TVPLANALMDMYVKCGK 230 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~ 230 (588)
+..+....+.++...++
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.84 E-value=24 Score=29.06 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=75.1
Q ss_pred HHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcC
Q 007818 31 CTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF 110 (588)
Q Consensus 31 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 110 (588)
--.+++.+..+|...-...+.++.+.+..+..-.+. .+.. .++...-...+.++...++.+....+. .+..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~--- 86 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK----DEDAWVRRAAADALGQIGDERAVEPLI-KALK--- 86 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---
Confidence 334444455666666666666666666543333333 3322 244444444555555555543333333 2322
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
.++..+-...+.++.+.++.+....+.+-+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 162 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3566666666677776666544444444455555555555556665555533 3333333332 23444444444444
Q ss_pred hccCC
Q 007818 191 AQLED 195 (588)
Q Consensus 191 ~~~~~ 195 (588)
...|.
T Consensus 163 ~~~~~ 167 (201)
T 3ltj_A 163 GEIGG 167 (201)
T ss_dssp HHHCS
T ss_pred HHhCc
Confidence 44443
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.16 E-value=16 Score=27.82 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 007818 58 KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122 (588)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (588)
+.-+..+-++.+.. ..+-|++......+++|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 68 D~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33445555555555 5566777777777777777777777777777776543 233445555554
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.47 E-value=14 Score=35.22 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
+...+...+.+.|+++.|.+.+.++... ...+. ...+...++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555666666677777777777766654 22222 445555666666666666666666655
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.78 E-value=41 Score=27.77 Aligned_cols=47 Identities=9% Similarity=-0.134 Sum_probs=23.8
Q ss_pred hHHHHHHHHhCC----CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 465 LEEAEQLIRSMP----MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 465 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
..++.++|.-|. ..--+.-|......+...|++.+|..+++..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445555555441 12234445555555555566666666666555543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.86 E-value=15 Score=35.03 Aligned_cols=109 Identities=14% Similarity=0.029 Sum_probs=73.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHH--H
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPER------NSLTYTAIIGGLALHGKALDAISYFSEMIG---VGLMPDEIT--F 416 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~--~ 416 (588)
.+...+...|.+.|+++.|.+.|.++... -...+..++..+...+++..+...+.+... .+..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677889999999999999999887632 234677788888889999999998888654 332333322 1
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
..-...+...+++..|.+.|-+....+. ..+...+...+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~-~~e~~~~~~~~~ 251 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT-SIELTSYESIAT 251 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC-CSCHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC-ccchhhHHHHHH
Confidence 2223345567889999999988887633 233344444333
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=68.48 E-value=32 Score=29.09 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=53.9
Q ss_pred hhHHHHhhcccCCCChhhHHhhcccCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc---HHHHH
Q 007818 13 PSRLIAFCAISESKNLDYCTKILFNVQN---PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT---YPLLF 86 (588)
Q Consensus 13 ~~~ll~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~ 86 (588)
.+.|..+. +.|+.+....+++.-.. ++.... +.+...+..|+.+-+..++ + .|..++... -.+.+
T Consensus 10 ~~~l~~A~---~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~-~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 10 TWDIVKAT---QYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYI----S-KGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp GCCHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH----H-TTCCTTCCBTTTTBCHH
T ss_pred chHHHHHH---HcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHH----H-cCCcchhhcCCcCCChh
Confidence 33444444 47888888777765432 222222 2344455666665444433 3 222222111 11234
Q ss_pred HHHHccCChhhHHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChhHHHHHhccC
Q 007818 87 KVCASLGLRFLGYEIFGHVLKLGFDVDMY--VHNAVIHVFVSCGDLGLACNVFDES 140 (588)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~ 140 (588)
...+..|+.+- ++.+.+.|..++.. .-...+...+..|+.+-+..+++..
T Consensus 81 ~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 81 HWATRQGHLSM----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence 44445566543 34444555444321 1112233445567777666666653
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.02 E-value=31 Score=28.51 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=48.4
Q ss_pred cCChhhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHH
Q 007818 92 LGLRFLGYEIFGHVLKLGFDVDM-YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155 (588)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 155 (588)
.++...+..+|..|...|+.... ..|......+...|++.+|.++|+.+....+.....|...+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 44477899999999999976554 46777778888899999999999887666666555554443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.33 E-value=68 Score=27.81 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=53.5
Q ss_pred HHHHHHHhCCChhHHHHHhccCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhcc
Q 007818 119 AVIHVFVSCGDLGLACNVFDESCVRNLV---SWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT--MIGMVSACAQL 193 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 193 (588)
..+...++.|+++....+++.....+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3455566788888888888775443322 1123344455566654 3444445555544321 11222333344
Q ss_pred CChhHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhcCChhHHHHHHHh
Q 007818 194 EDLNLGREIHWYISESGLTLTVPL--ANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 194 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
|+.+ +++.+.+.|..++... -...+...+..|+.+-...+++.
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh
Confidence 4443 3444445555443211 01223333455555555555544
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.23 E-value=94 Score=29.37 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=6.4
Q ss_pred CCChhhHHhhccc
Q 007818 25 SKNLDYCTKILFN 37 (588)
Q Consensus 25 ~g~~~~a~~~~~~ 37 (588)
.|+.+-+..+++.
T Consensus 24 ~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 24 MGHLPIVKNLLQR 36 (437)
T ss_dssp HTCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 4555555544443
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.59 E-value=25 Score=30.41 Aligned_cols=92 Identities=13% Similarity=-0.012 Sum_probs=46.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcc-------cHHHHHHHHH--ccCChhhHHHHHHHHHHhcC---------C
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNF-------TYPLLFKVCA--SLGLRFLGYEIFGHVLKLGF---------D 111 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~ 111 (588)
+...++.|+.+....+++.+.. .+..++.. -.+.|..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3344566777777777776555 34444422 2223333322 56777777666665443110 0
Q ss_pred -CChhHHHHHHHHHHhCCChhHHHHHhccCCCC
Q 007818 112 -VDMYVHNAVIHVFVSCGDLGLACNVFDESCVR 143 (588)
Q Consensus 112 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 143 (588)
.+..-.+ .+...+..|+.+-+..+++....+
T Consensus 88 ~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~ 119 (260)
T 3jxi_A 88 DVYYRGQT-ALHIAIERRCKHYVELLVEKGADV 119 (260)
T ss_dssp CSSEESBC-HHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ccccCCCC-HHHHHHHcCCHHHHHHHHhCCCCc
Confidence 0111122 233445667877777777764433
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.08 E-value=77 Score=27.66 Aligned_cols=62 Identities=10% Similarity=-0.120 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
++..+-...+.++.+.|+..-...+.+.+. .|+ .-...+.+....|+ +.+...+.++++..+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFD 265 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCC
Confidence 344444444555555554333333333322 222 12233344444454 245555555554443
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=61.40 E-value=54 Score=26.70 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=8.5
Q ss_pred CCChhhHHhhcccC
Q 007818 25 SKNLDYCTKILFNV 38 (588)
Q Consensus 25 ~g~~~~a~~~~~~~ 38 (588)
.|+.+....++..-
T Consensus 15 ~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 15 QRDTKKVKEILQDT 28 (201)
T ss_dssp TTCHHHHHHHHTCT
T ss_pred hccHHHHHHHHHcC
Confidence 56666666666543
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=60.64 E-value=95 Score=27.88 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=45.8
Q ss_pred HHhCCCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 472 IRSMPMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 472 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
|.....+| -..++...+..+.+.+++..|..+.++++++.|.. ...++|.+++....+.+..
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~~D 259 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMASD 259 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCCCC
Confidence 33334555 34577788888999999999999999999999942 2345688888888765443
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.08 E-value=57 Score=28.72 Aligned_cols=139 Identities=11% Similarity=0.050 Sum_probs=61.5
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCC
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM---YVHNAVIHVFVSCGD 129 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 129 (588)
.+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+.. +.+.|..++. .-.+. +...+..|+
T Consensus 38 A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~-L~~A~~~g~ 107 (285)
T 3kea_A 38 AIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTA-LYYAVDSGN 107 (285)
T ss_dssp HHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcH-HHHHHHcCC
Confidence 3445666554444433 222222211233444455666554433 3344544332 11222 333445677
Q ss_pred hhHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHhccCChhHHHHHHHH
Q 007818 130 LGLACNVFDESCVR---NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV-TMIGMVSACAQLEDLNLGREIHWY 205 (588)
Q Consensus 130 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 205 (588)
.+-+..+++....+ +...|.+.+...+..|+.+- ++.+.+.|..+... .-.+.+...+..|+.+-+.-+++.
T Consensus 108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 77666666653322 22233344444555565543 33333344333221 233444444556666555544443
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.86 E-value=86 Score=27.13 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=89.9
Q ss_pred CCCChhhHHhhcccCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHHccCChhhH
Q 007818 24 ESKNLDYCTKILFNVQNPNSF---SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT--YPLLFKVCASLGLRFLG 98 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 98 (588)
+.|+.+....+++.-..++.. .-.+.+...+..|+.+-+.. +.+ .|..++... -.+.+...+..|+.+
T Consensus 14 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~-- 86 (285)
T 1wdy_A 14 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL----LLR-HGADPVLRKKNGATPFLLAAIAGSVK-- 86 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH----HHH-TTCCTTCCCTTCCCHHHHHHHHTCHH--
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHH----HHH-cCCCCcccCCCCCCHHHHHHHcCCHH--
Confidence 578888887777764432211 11233444455666544333 333 344433211 112333444555554
Q ss_pred HHHHHHHHHhcCCCChh---HHHHHHHHHHhCCChhHHHHHhccCCCCCcc-------------cHHHHHHHHHhCCChh
Q 007818 99 YEIFGHVLKLGFDVDMY---VHNAVIHVFVSCGDLGLACNVFDESCVRNLV-------------SWNSLINGFVRSGFPR 162 (588)
Q Consensus 99 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~ 162 (588)
+++.+.+.|..++.. -.+ .+...+..|+.+-...+++....++.. ..+ .+...+..|+.+
T Consensus 87 --~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~ 162 (285)
T 1wdy_A 87 --LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHVE 162 (285)
T ss_dssp --HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHTCHH
T ss_pred --HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcCCHH
Confidence 444445556444321 122 233445667777777776664333221 112 233334455554
Q ss_pred HHHHHHHHhHHCCCCCCcc---hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhcCChhHHHHH
Q 007818 163 EAIRLFRDMQLERVEPDEV---TMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPL--ANALMDMYVKCGKLESAEEI 237 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 237 (588)
-+..+++. .|..++.. ..+. +...+..++.....++++.+.+.|..++... -...+...+..|+.+-+..+
T Consensus 163 ~v~~Ll~~---~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 163 VLKILLDE---MGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHHHHT---SCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHh---cCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 33333322 13333321 1222 2223334554455566666666665544321 11223334445555554444
Q ss_pred HH
Q 007818 238 FD 239 (588)
Q Consensus 238 ~~ 239 (588)
++
T Consensus 239 l~ 240 (285)
T 1wdy_A 239 LE 240 (285)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 287
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=58.53 E-value=82 Score=26.45 Aligned_cols=17 Identities=6% Similarity=0.055 Sum_probs=7.7
Q ss_pred cccCChhHHHHHHHHHH
Q 007818 323 SQLGALDDGIWIHRFIE 339 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~ 339 (588)
...|+...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 288
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.47 E-value=1.2e+02 Score=28.24 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHH---HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVW---GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
.|....+..++.+| ..+++.+..++++... ...|.... ..+.... -...+.++ ..|-....+..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I--------r~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM--------LEQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--------HHHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--------HHHHHHHH--hHhhceeeHHH
Confidence 35555566666665 5678888888887763 23344321 1111111 11122222 24666677888
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
++..+.- ..+++...+.+|...|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 8877654 68899999999988764
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.17 E-value=76 Score=25.36 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=54.3
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----------------cCCCCCc-hHHH
Q 007818 459 LGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE-----------------LDPQDSG-IYVL 520 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------------~~p~~~~-~~~~ 520 (588)
+.-.|.+..++-++.... ......|..+ ++.+.+++..|...++.+++ ++|.|.. .+..
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 445778888887776652 1122223332 45567888888888888873 2233333 3567
Q ss_pred HHHHHHccCChHHHHHHHHHHH
Q 007818 521 LANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
++..+...|+.+||++.+..--
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhc
Confidence 8899999999999999987653
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.55 E-value=48 Score=32.23 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
..++.+++.|...+.++.|..+..+..--....++ ..-+..++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35677777777778888888777776310000111 111223455666777777777777654
No 291
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=54.36 E-value=75 Score=26.02 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=21.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.+..|.+.|.+++|.+++++..+..|.+...-.-|..+-.+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34457777777777777777776665544444444443333
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.13 E-value=51 Score=25.83 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHH
Q 007818 96 FLGYEIFGHVLKLGFDVDM-YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLI 152 (588)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 152 (588)
+.+..+|..|...|+.... ..|..-...+...|++.+|.++|+.....+......|.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3366777777777654433 34555555666666666666666665444444444443
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.92 E-value=81 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=25.5
Q ss_pred HHHHHHHHhccC--CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 500 GERAAMKLLELD--PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 500 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
+..+|..+...+ -..+..|...+..+...|++++|.++++.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555444322 3344445555556666666666666666555544433
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.59 E-value=1e+02 Score=25.81 Aligned_cols=19 Identities=11% Similarity=-0.132 Sum_probs=7.8
Q ss_pred ccCChhhHHHHHHHHHHhc
Q 007818 91 SLGLRFLGYEIFGHVLKLG 109 (588)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~ 109 (588)
..|+.+.+..+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3344444444444433333
No 295
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.54 E-value=46 Score=32.35 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=34.5
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
..-...+..|...|.++..+.|.+...|+.|+......|+.-+|.=+|-+..
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3344556677777777777777777777777777777777666665555444
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.35 E-value=1.6e+02 Score=28.05 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=92.8
Q ss_pred CCCChhhHHhhcccCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPN-SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (588)
...+.+.|.++..+..-|- ...|..-.+.+...|++++|.++--...+ |+--+..|.+.+-..=...|+..--..+|
T Consensus 341 ~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 341 VLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 5678888999888876443 33466778889999999999988876654 45555666655555444567777788888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHh
Q 007818 103 GHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171 (588)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 171 (588)
..+.+.| ..+..---.+++.-...|+.+-.++++.+..-.-..-...++ +..+..-|+.+|.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh----hhcCHHHHHHHHHHc
Confidence 8888887 466666666777777788888887777664322222222222 333455555555443
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.66 E-value=95 Score=25.12 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=72.2
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChh---HHHHHHHHHH
Q 007818 52 GFLETGKMREAVDLYKQMLRNGGTRPD---NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY---VHNAVIHVFV 125 (588)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 125 (588)
..+..|+.+....+++.- +..++ ..-. +.+...+..|+.+ +++.+.+.|..++.. -.+ .+...+
T Consensus 11 ~A~~~g~~~~v~~ll~~~----~~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~ 80 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT----TYQVDEVDTEGN-TPLNIAVHNNDIE----IAKALIDRGADINLQNSISDS-PYLYAG 80 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT----TCCTTCCCTTSC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHhccHHHHHHHHHcC----CCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHH
Confidence 345677777777666432 22222 2222 2344445666655 444555566554432 222 334445
Q ss_pred hCCChhHHHHHhccCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC---CcchHHHHHHHHhccCChhH
Q 007818 126 SCGDLGLACNVFDESC----VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP---DEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~ 198 (588)
..|+.+-+..+++... ..+....+. +...+..|+.+-+..+++.-. ..+ |..-.+.+..++........
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCC---CCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCC---CCcCCCCCCCCCHHHHHHHhccchhh
Confidence 6788888877775421 122222222 333455666654444443320 222 22223334444433332333
Q ss_pred HHHHHHHHHHhCCCCCh
Q 007818 199 GREIHWYISESGLTLTV 215 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~ 215 (588)
-.++.+.+.+.|..++.
T Consensus 157 ~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 157 YQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 45667777777766553
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.52 E-value=59 Score=25.82 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHh--cCCCChhHHHHHHHHHHhCCCh
Q 007818 59 MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKL--GFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
.+.+++-+++..+..|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4566666766666578887654 345677777777888999999999998 7777777777778888888754
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.97 E-value=62 Score=27.64 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=15.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+.......+..+.+.|+.++|.++|=+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444555666666666666665533
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.35 E-value=1.1e+02 Score=25.50 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=11.5
Q ss_pred HHHHHhCCChhHHHHHhccC
Q 007818 121 IHVFVSCGDLGLACNVFDES 140 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~~ 140 (588)
+...+..|+.+-+..+++..
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 44445566666666666554
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.16 E-value=1.1e+02 Score=26.95 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHhHhcCChhHHHHHhcc
Q 007818 353 LVDMYAKCGNIAKALQVFHE 372 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~ 372 (588)
.+...+..|+.+-+..+++.
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 33344455555555555543
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.89 E-value=74 Score=27.30 Aligned_cols=55 Identities=9% Similarity=-0.062 Sum_probs=29.3
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcch-------HHHHHHHHh--ccCChhHHHHHHHHH
Q 007818 152 INGFVRSGFPREAIRLFRDMQLERVEPDEVT-------MIGMVSACA--QLEDLNLGREIHWYI 206 (588)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 206 (588)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344566777777677776666555544322 233333332 456666665555543
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.78 E-value=1.2e+02 Score=25.31 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhH--HHHHHHHHH
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNFT--YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV--HNAVIHVFV 125 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 125 (588)
+...++.|+.+....+++.+.+ .+..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 3444566777777666665554 444443221 112344444556654 3444445564443211 112233344
Q ss_pred hCCChhHHHHHhccC
Q 007818 126 SCGDLGLACNVFDES 140 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~ 140 (588)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 567776666666654
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.68 E-value=56 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLR 71 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~ 71 (588)
--++++....++++|.+++++...
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 347788899999999998887654
No 305
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=46.86 E-value=1.9e+02 Score=27.19 Aligned_cols=330 Identities=12% Similarity=0.111 Sum_probs=154.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChh--HHHHHHHHHH
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNF--TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY--VHNAVIHVFV 125 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 125 (588)
+...+..|+.+-+..+++ .|..|+.. ...+.+...+..|+.+-+..+ .+.|..++.. .-...+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~-----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQ-----RGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH-----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH-----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHH
Confidence 444456677665554443 34444322 122345555666776644444 4455443321 1112344455
Q ss_pred hCCChhHHHHHhccCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC---cchHHHHHHHHhccCChhHH
Q 007818 126 SCGDLGLACNVFDESCVRN---LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPD---EVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 199 (588)
..|+.+-+.-+++....++ ...++. +...+..|+.+-+..+++ .+..++ .... +.+...+..|+.+-
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~- 161 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRV- 161 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHH-
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHH-
Confidence 6788887777777654332 222233 344455677665555544 332222 1112 23344455566543
Q ss_pred HHHHHHHHHhCCCCChhh--HHHHHHHHHhcCChhHHHHHHHhcCCCCcch--HHHHHHHHHhcCCHHHHHHHhhhCCCC
Q 007818 200 REIHWYISESGLTLTVPL--ANALMDMYVKCGKLESAEEIFDSMVNKTVVS--CTTMIVGYAKFGFLDIARKIFDDLPEK 275 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 275 (588)
++.+.+.|..++... -...+...+..|+.+-..-+++.-..++... -.+.+...+..|+.+-+..+++.-...
T Consensus 162 ---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 238 (437)
T 1n11_A 162 ---AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238 (437)
T ss_dssp ---HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ---HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 444455555444321 1123444556777776666665543322211 112344455677777777776643322
Q ss_pred C---cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcch-
Q 007818 276 Y---VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA---VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV- 348 (588)
Q Consensus 276 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 348 (588)
+ ....+.+ ...+..|+.+- ++.+.+.|..++. ...+.+.. .+..|..+ +.+.+.+.|..++..
T Consensus 239 ~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~ 308 (437)
T 1n11_A 239 NAESVQGVTPL-HLAAQEGHAEM----VALLLSKQANGNLGNKSGLTPLHL-VAQEGHVP----VADVLIKHGVMVDATT 308 (437)
T ss_dssp TCCCTTCCCHH-HHHHHTTCHHH----HHHHHTTTCCTTCCCTTCCCHHHH-HHHHTCHH----HHHHHHHHTCCTTCCC
T ss_pred CCCCCCCCCHH-HHHHHCCCHHH----HHHHHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCccCCCCC
Confidence 2 1112222 23345555443 3334444433321 11222222 23445544 344445555444321
Q ss_pred -HHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007818 349 -LGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413 (588)
Q Consensus 349 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 413 (588)
.-.+.+...+..|+.+-+.-+++.-..+ +...++.|..+ +..|+.+ +.+.+.+.|..|+.
T Consensus 309 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 1123344556678888777777654432 22233334333 4456644 44555566766654
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.82 E-value=1.3e+02 Score=25.02 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=6.7
Q ss_pred HHhCCChHHHHHHHH
Q 007818 53 FLETGKMREAVDLYK 67 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~ 67 (588)
.++.|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444444443
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.72 E-value=1.1e+02 Score=24.25 Aligned_cols=32 Identities=3% Similarity=-0.129 Sum_probs=18.8
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
-+..|......+...|++.+|..+++..++..
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455555555566666666666666666544
No 308
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.57 E-value=1.6e+02 Score=25.60 Aligned_cols=48 Identities=2% Similarity=-0.174 Sum_probs=20.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007818 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKF 259 (588)
Q Consensus 212 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 259 (588)
.++..+....+.++...|+.+..-.+...+..++...-...+.++.+.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 345555555555555555533333333333444444444444444333
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.09 E-value=80 Score=24.61 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=42.6
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 169 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445667776655433 45555656667788999999998887777877777777777777754
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.60 E-value=80 Score=24.58 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=44.9
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 169 RDMQLERVEPDEVTMIGMVSACAQLE-DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 169 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346667877765544 4555666665 6778999999998887777877777777888777754
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.74 E-value=79 Score=24.43 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 169 RDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 169 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345667777665433 44455555566777888888887777667777777777777776654
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.16 E-value=62 Score=24.46 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPERNS---LTYTAIIGGLALHGK--ALDAISYFSEMIGVGLMPD 412 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~ 412 (588)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 5677778888899999999988875522 233344444544432 3566777777777664443
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.93 E-value=77 Score=24.14 Aligned_cols=61 Identities=7% Similarity=0.114 Sum_probs=41.3
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLE-DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35667777665443 4455555555 6778888888888887777777777777777776654
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.71 E-value=61 Score=31.50 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CH--hHH-HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA----DV--VVW-GALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
...++.+++.|...+.++.|..+..+..... +. ..| --++..+.-.+++.+|.+.+..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 5678888999999999999999998875331 11 122 22344466788999999999999988886543
No 315
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.39 E-value=1.3e+02 Score=25.05 Aligned_cols=55 Identities=4% Similarity=-0.144 Sum_probs=29.4
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 007818 155 FVRSGFPREAIRLFRDMQLERVEPDEVT--MIGMVSACAQLEDLNLGREIHWYISESGLTL 213 (588)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (588)
.+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 128 A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 128 AACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34445543 3334444555444321 1234455566677777777777777776543
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.89 E-value=1.4e+02 Score=25.30 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=46.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCc-------ccHHHHHHHHHcc---CChhhHHHHHHHHHHhcCCC-------
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDN-------FTYPLLFKVCASL---GLRFLGYEIFGHVLKLGFDV------- 112 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 112 (588)
+...++.|+.+....+++.+.. .|..++. .-.+. +...+.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 3444566777766666666555 3443332 22223 3333334 77776666666544432111
Q ss_pred ---ChhHHHHHHHHHHhCCChhHHHHHhccCCC
Q 007818 113 ---DMYVHNAVIHVFVSCGDLGLACNVFDESCV 142 (588)
Q Consensus 113 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 142 (588)
+..-.+. +...+..|+.+-+..+++....
T Consensus 84 ~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 84 TDEFYQGHSA-LHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp CSTTTTTCCH-HHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccCCCH-HHHHHHcCCHHHHHHHHHcCCC
Confidence 1122223 3344567777777777776433
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.27 E-value=93 Score=20.89 Aligned_cols=62 Identities=3% Similarity=0.103 Sum_probs=41.5
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 169 RDMQLERVEPDEVTMIGMVSACAQLE-DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 169 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777766544 35556666554 5667888888888776666777777777777776643
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.04 E-value=1.6e+02 Score=31.61 Aligned_cols=86 Identities=5% Similarity=-0.189 Sum_probs=49.2
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-C----------------
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM--A-A---------------- 479 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---------------- 479 (588)
++..|...|.++-+.++... .+.++..-..++.+|...|++++|.+.|+++.. . +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 45556666666655443322 223333334567777888888888888887631 0 0
Q ss_pred ------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 480 ------DVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 480 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
....|..++.-+.+++-++-+++..+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0113445555566666777777776666653
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.64 E-value=1.4e+02 Score=23.62 Aligned_cols=69 Identities=4% Similarity=0.075 Sum_probs=49.1
Q ss_pred hHHHHHHHH-hHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh--CCCCChhhHHHHHHHHHhcCCh
Q 007818 162 REAIRLFRD-MQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES--GLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 162 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.+++-+.+ +++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 456688776543 45667777777888999999999888 7777877777777888877754
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.24 E-value=2.1e+02 Score=26.02 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=7.9
Q ss_pred HHhcCChhHHHHHHHh
Q 007818 225 YVKCGKLESAEEIFDS 240 (588)
Q Consensus 225 ~~~~g~~~~A~~~~~~ 240 (588)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445555555555443
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.14 E-value=1.5e+02 Score=24.69 Aligned_cols=148 Identities=7% Similarity=-0.058 Sum_probs=82.8
Q ss_pred CCCChhhHHhhccc-CC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC---CCCCcccHHHHHHHHHccCChh
Q 007818 24 ESKNLDYCTKILFN-VQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG---TRPDNFTYPLLFKVCASLGLRF 96 (588)
Q Consensus 24 ~~g~~~~a~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 96 (588)
+.|+.+....+++. -. ..|..-++. +...+..|+.+-+..+++.-..... ...|..-. +.+...+..|+.+
T Consensus 12 ~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~ 89 (232)
T 2rfa_A 12 KENDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAVINQNVN 89 (232)
T ss_dssp HTTCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHHHHHHHcCCHH
Confidence 58889888888876 22 233333333 4444567787777666665322000 01111222 2344445566765
Q ss_pred hHHHHHHHHHHhcCCCChhH---------------HHHHHHHHHhCCChhHHHHHhccCCCC---CcccHHHHHHHHHhC
Q 007818 97 LGYEIFGHVLKLGFDVDMYV---------------HNAVIHVFVSCGDLGLACNVFDESCVR---NLVSWNSLINGFVRS 158 (588)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 158 (588)
+++.+.+.|..++... -...+...+..|+.+-+..+++....+ |..-+ +.+...+..
T Consensus 90 ----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~ 164 (232)
T 2rfa_A 90 ----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQ 164 (232)
T ss_dssp ----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTC
T ss_pred ----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHc
Confidence 4445555665544321 123344456678888888888765443 22233 334555677
Q ss_pred CChhHHHHHHHHhHHCCCCC
Q 007818 159 GFPREAIRLFRDMQLERVEP 178 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p 178 (588)
|+.+-+..+++.+.+.|..+
T Consensus 165 ~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 165 PNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SCHHHHHHHHHHHHHTTCSC
T ss_pred CChHHHHHHHHHHHhcCCch
Confidence 88888888888888877544
No 322
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.64 E-value=82 Score=24.15 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=6.8
Q ss_pred HhCCChHHHHHHHHH
Q 007818 54 LETGKMREAVDLYKQ 68 (588)
Q Consensus 54 ~~~~~~~~a~~~~~~ 68 (588)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344454444444443
No 323
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.25 E-value=1.4e+02 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC
Q 007818 219 NALMDMYVKCGKLESAEEIFDSMVN 243 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~~~~~~~~~ 243 (588)
..++.-|...|+.++|.+.++++..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~ 35 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEV 35 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4455555555555555555555543
No 324
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=34.08 E-value=1.1e+02 Score=21.26 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCCh
Q 007818 98 GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161 (588)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (588)
...+++.+.+.|+ .+..-+..+-. .....++|..+++.+......+|..++.++...+..
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 4456777777665 33333332222 356677888888888777778888888887776654
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.70 E-value=1.2e+02 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCC
Q 007818 219 NALMDMYVKCGKLESAEEIFDSMVNK 244 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 244 (588)
..++.-|...|+.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 44555566666666666666665433
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.74 E-value=1.5e+02 Score=23.03 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=40.9
Q ss_pred CCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 73 GGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
.|.+++..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 21 ~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 21 NGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp CC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 677666543 345666666667788999999999888777787777778888887754
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.53 E-value=57 Score=25.56 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGK--ALDAISYFSEMIGVGLMPD 412 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~ 412 (588)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567778888899999999998887652 1233444445544322 3556777777777664433
No 328
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.48 E-value=1.9e+02 Score=22.97 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHH
Q 007818 98 GYEIFGHVLKLGFDVDM-YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWN 149 (588)
Q Consensus 98 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 149 (588)
+..+|..|..+|+.... ..|......+-..|++.+|.++|+...........
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44555555555543332 23444445555555555555555554433333333
No 329
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.97 E-value=2.8e+02 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC
Q 007818 287 YVQAKRSKEALALFHEMQATGIK 309 (588)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~ 309 (588)
.+..|+.+-+..+++.....|..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCC
Confidence 33455655555555544433433
No 330
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.82 E-value=1.6e+02 Score=25.41 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=39.3
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCC-------CcccHHHHHHHHH--ccCChhhHHHHHHHHHHhc---------CC-CC
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRP-------DNFTYPLLFKVCA--SLGLRFLGYEIFGHVLKLG---------FD-VD 113 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~~ 113 (588)
.++.|+.+....+++.... .+... +..-.+.|..++. +.|+.+-+..+++.-...+ .. .+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d 98 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQR-SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSY 98 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHH-SCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTT
T ss_pred HHHcCCHHHHHHHHHHHhh-cccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccccc
Confidence 3455666666666665544 22211 2222333333332 3466665555555433211 00 11
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDESC 141 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 141 (588)
..-.+.| ...+..|+.+-+..+++...
T Consensus 99 ~~g~tpL-~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 99 YKGQTAL-HIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp TTTCCHH-HHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHH-HHHHHcCCHHHHHHHHHCCC
Confidence 1222223 33345677777766666543
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.23 E-value=77 Score=24.52 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=36.3
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
.+++.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34556666655432 3344444444 567777777777776666766666666666666643
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.47 E-value=4.1e+02 Score=28.42 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=36.0
Q ss_pred HHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007818 16 LIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70 (588)
Q Consensus 16 ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 70 (588)
++..+. ..|.++-|+++....+. ++..-..+.++|...|++++|.+.|++..
T Consensus 816 l~~~L~--~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLF--LFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHH--HTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHH--HhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444555 56777777776655554 44444467788888899999988888764
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.31 E-value=2.5e+02 Score=23.67 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC
Q 007818 395 LDAISYFSEMIGVGLMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (588)
+.+..+|..|...|+--.. ..|......+...|++.+|.++|+.-.+. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4556677777776654443 35666666667777777777777777765 5555
No 334
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.86 E-value=1.9e+02 Score=22.24 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=7.8
Q ss_pred CCChhhHHhhccc
Q 007818 25 SKNLDYCTKILFN 37 (588)
Q Consensus 25 ~g~~~~a~~~~~~ 37 (588)
.|+.+....+++.
T Consensus 18 ~g~~~~v~~ll~~ 30 (165)
T 3twr_A 18 AGDVETVKKLCTV 30 (165)
T ss_dssp HTCHHHHHHHCCT
T ss_pred hCCHHHHHHHHHc
Confidence 5666666666553
No 335
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.43 E-value=2.3e+02 Score=25.34 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcc--cHHHHHHHHHhCCCh--hHHHHHHHHhH
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLV--SWNSLINGFVRSGFP--REAIRLFRDMQ 172 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~--~~a~~~~~~m~ 172 (588)
...++.-|...|+.++|...++++..|... ....++......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456777888889999999999988766422 222333333333332 33445555554
No 336
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.30 E-value=88 Score=22.12 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=22.5
Q ss_pred ChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHH
Q 007818 230 KLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA 265 (588)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 265 (588)
..++|.++++.+..+++..|..++.++...+...-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 466667777777666666666666666554544433
No 337
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.06 E-value=3.2e+02 Score=24.54 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=45.2
Q ss_pred HHhCCCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 472 IRSMPMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 472 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
|.....+| -..++...+....+.+++..|..+.++++++.|+ +. ..++|.+++....+.+..
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ce~~~~d 250 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSACEKNPTD 250 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHHHHHSCCB
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhcCCCC
Confidence 33334454 3456777888889999999999999999999884 11 345688888888766543
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.44 E-value=49 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=15.9
Q ss_pred ChhhHHhhcccCCCCChhhHHHHHHHHHhCCC
Q 007818 27 NLDYCTKILFNVQNPNSFSWNVAIRGFLETGK 58 (588)
Q Consensus 27 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 58 (588)
+.+.|+++++.++...+.+|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 34455555555555555555555555544343
No 339
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.43 E-value=3.4e+02 Score=24.63 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCc---chHHHHHHHHHhc-CCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChH
Q 007818 219 NALMDMYVKCGKLESAEEIFDSMVNKTV---VSCTTMIVGYAKF-GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 294 (588)
..++.-|...|+.++|...++++..|.. .+...+..++-+. ...+.+..++..+...+..+-..+..++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~------ 88 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY------ 88 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH------
Confidence 4567777888888888888888866532 1111111111111 11233444455444455555444444432
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HcccCChhH---HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHh
Q 007818 295 EALALFHEMQATGIKPDAVTTVHCLSA-CSQLGALDD---GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVF 370 (588)
Q Consensus 295 ~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 370 (588)
+..+.+.++.- -.|....+..-+-+ +...|-... ...+.+.+.+.|. .......++..+.+....+.+.++|
T Consensus 89 ~~~~~l~Dl~l--DiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 89 EILELAEDMEI--DIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp HHHHHHHHHTT--TCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHhhChHhhc--CccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 22222222221 13555554433333 333333221 1122223333332 2233445555566666666666666
Q ss_pred cc
Q 007818 371 HE 372 (588)
Q Consensus 371 ~~ 372 (588)
.+
T Consensus 165 ~~ 166 (339)
T 1ug3_A 165 RE 166 (339)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 340
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.26 E-value=2e+02 Score=24.22 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=24.5
Q ss_pred CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
--+..|......+...|++.+|..+|+..++..
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 356666777777777888888888888887654
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.11 E-value=1.1e+02 Score=23.53 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
++..+...+.+-.|.++++.+.+.+...+..|....+..+..
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 333444444444555555555554434444444333333333
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.27 E-value=62 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
.++|.+.|.+|.+..-.++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367788888776554445567888777776
No 343
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.78 E-value=5.1e+02 Score=26.20 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=40.2
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhc---cCC
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDEITFLGILSACC---HGG 427 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~---~~~ 427 (588)
....++.-.|+++.|.+.+-.....+.+.+.+.+ ...|-... =+.+..... .| ..-+..++..|. +..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL---~~~gLL~~----~~~lls~~~~~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGL---ASLKLFKI----DSSTRLTKKPKR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHH---HHTTC----------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHH---HHcCCccC----CCcccccCCCcc-cccHHHHHHHHHHHhhcC
Confidence 3566677789999999988766222222222222 22222221 011111100 11 223666676665 467
Q ss_pred chHHHHHHHHHhh
Q 007818 428 LVDEGRKYFAQMS 440 (588)
Q Consensus 428 ~~~~a~~~~~~~~ 440 (588)
++.+|.++|-.+.
T Consensus 371 d~~~Al~Y~~li~ 383 (661)
T 2qx5_A 371 DPRVAVEYLVLIT 383 (661)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHh
Confidence 8888998888773
No 344
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.96 E-value=1.7e+02 Score=20.34 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=26.7
Q ss_pred cCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007818 228 CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 228 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 267 (588)
....++|.++++.+..++...|..++.++...+...-|..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~ 88 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAAL 88 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHH
Confidence 4566777777777777777777777777766665444433
No 345
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.85 E-value=2.6e+02 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=10.1
Q ss_pred HhCCChhHHHHHHHHhHHCC
Q 007818 156 VRSGFPREAIRLFRDMQLER 175 (588)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~~ 175 (588)
++.|+.+.+..+++.....+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 44555555555555544433
No 346
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.75 E-value=53 Score=20.73 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCcc
Q 007818 56 TGKMREAVDLYKQMLRNGGTRPDNF 80 (588)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~~~~~~~~ 80 (588)
.-|++.|...|..+.....++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4489999999999887566776643
No 347
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.66 E-value=2.5e+02 Score=23.43 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh
Q 007818 394 ALDAISYFSEMIGVGLMPDEI-------TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (588)
.+.|+.+|+.+.+...-|+.. .-...+..|.+.|.+++|.+++++.. +-.++..-...-+....+..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~---~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM---SKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh---cCCCCchHHHHHHHHHHhccCc
No 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.02 E-value=2.5e+02 Score=22.52 Aligned_cols=90 Identities=10% Similarity=0.071 Sum_probs=42.4
Q ss_pred HhCCChhHHHHHhccCCCC-C-cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch---HHHHHHHHhc-cCChhH
Q 007818 125 VSCGDLGLACNVFDESCVR-N-LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT---MIGMVSACAQ-LEDLNL 198 (588)
Q Consensus 125 ~~~~~~~~A~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~-~~~~~~ 198 (588)
++.|+++....++...... + ..-+ +.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 3455555555555443211 1 1112 234444555666655666677777776665432 2222222221 223334
Q ss_pred HHHHHHHHHHhCCCCCh
Q 007818 199 GREIHWYISESGLTLTV 215 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~ 215 (588)
..++.+.+++.|..++.
T Consensus 93 ~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 93 TTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 45566666666655543
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.45 E-value=4.2e+02 Score=24.01 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=35.0
Q ss_pred hhHHHHhhcccCCCChhhHHhhcccCCCCChh---hHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 007818 13 PSRLIAFCAISESKNLDYCTKILFNVQNPNSF---SWNVAIRGFLETG-KMREAVDLYKQMLR 71 (588)
Q Consensus 13 ~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 71 (588)
.+.++.-|. ..|+.++|.+.+.++..|... .+..+..++-+.. ..+.+..++..+.+
T Consensus 14 ~~~ll~Ey~--~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~ 74 (339)
T 1ug3_A 14 SKAIIEEYL--HLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLC 74 (339)
T ss_dssp HHHHHHHHH--HHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456788787 789999999999999876522 2222222332221 12345566666665
No 350
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.32 E-value=2.7e+02 Score=25.60 Aligned_cols=126 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCCC---cccHHHHHHHHHhCCCh--hHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 116 VHNAVIHVFVSCGDLGLACNVFDESCVRN---LVSWNSLINGFVRSGFP--REAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 116 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
....++.=|...|+.++|...++++..|+ ......++......++. +.+-.++..+...|+-+.......+.+.+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred hccC----ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 191 AQLE----DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 191 ~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
.... |...|..++..+....+.-+......+...+...+...-...++..+
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.25 E-value=5e+02 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=12.8
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
|..-.+.+...|++++|.++-...+
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 3333444555566666655554443
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.13 E-value=1.3e+02 Score=22.91 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=35.6
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45666666667778999999998887777777777777888777754
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.95 E-value=1.5e+02 Score=22.62 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh
Q 007818 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 185 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555555667777777777766666666666666666666643
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.40 E-value=1.5e+02 Score=22.34 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555666778888888888877666777777777777777654
No 355
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.08 E-value=1.6e+02 Score=29.87 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 466 EEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+.|.++.+-|. ...............|++.-|.++...++..+|+|..+...++.+|.+.|
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44555555553 23333444555668899999999999999999999988888888887766
No 356
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.97 E-value=2.8e+02 Score=21.43 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=41.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 301 HEMQATGIKPDAVTTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 301 ~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3466778777765443 344444555 6677888998888887777777666666777766644
No 357
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.17 E-value=2.7e+02 Score=20.98 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=37.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCC
Q 007818 302 EMQATGIKPDAVTTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 302 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (588)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 356677777655443 334444444 567788888888887766666665556666666553
No 358
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.54 E-value=1.6e+02 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 007818 187 VSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 187 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 230 (588)
+..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333344455566666666665555555555555555555554
No 359
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.17 E-value=3.2e+02 Score=21.53 Aligned_cols=47 Identities=9% Similarity=-0.086 Sum_probs=26.0
Q ss_pred CChHHHHHHHHhC-CC--CC--CHhHHHHHHH----H--HHhhCCHHHHHHHHHHHhc
Q 007818 463 GLLEEAEQLIRSM-PM--AA--DVVVWGALFF----A--CRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 463 g~~~~A~~~~~~~-~~--~~--~~~~~~~l~~----~--~~~~~~~~~A~~~~~~~~~ 509 (588)
|++-+|-++++.. .. .+ ....|..++. + ..+.|+...|..++.+++.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666665554 11 12 2233433333 1 2457888888888888765
No 360
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.11 E-value=1.4e+02 Score=22.66 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=7.5
Q ss_pred CCChhhHHhhccc
Q 007818 25 SKNLDYCTKILFN 37 (588)
Q Consensus 25 ~g~~~~a~~~~~~ 37 (588)
.|+.+.+..+++.
T Consensus 12 ~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 12 RGDVQEVRRLLHR 24 (156)
T ss_dssp HTCHHHHHHHHHT
T ss_pred hCCHHHHHHHHHh
Confidence 5566666555554
Done!