BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007819
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/559 (31%), Positives = 293/559 (52%), Gaps = 59/559 (10%)
Query: 12 SGLQQLRSLYQPELPPCLQG--TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
S +Q R Y P+LP L+ + + +G++T D ++ F +TYG P+ F
Sbjct: 4 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQ--DRQALKEFFKNTYGLPIISFT 61
Query: 70 RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXX 129
+ + ++ A+ +GI+ G +PGGHNV+ G++DA+K NP S
Sbjct: 62 EGESSLSFSK------ALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115
Query: 130 XXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
+E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG
Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175
Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C
Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235
Query: 250 TDALSAEKV---------------------------ILGEEVAASKLTLFDLTKQICDAV 282
DA+S +K I+ EEV A K TL ++ ++ +
Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295
Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQ------GVPVDNIS----SQL 332
R+ N GV+++PEGLIE IPEV +L+ E+ + + G+ ++ + ++L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355
Query: 333 SPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389
S + ++ LP FI+ +L+ L+ + + +S++ TEKL +++ +N K G Y
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415
Query: 390 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 449
KG F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL
Sbjct: 416 KGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474
Query: 450 WRCGAAPITSMMTV-KRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLY 508
W G P+T +M + +R+ + +P I A VD+ G+ ++ +N ++ L++LY
Sbjct: 475 WIAGGVPLTMLMNMEERYGEK-------KPVIKKALVDLEGRPFKEFVKNRDKWALNNLY 527
Query: 509 RNPGPVQFDGPGADAKAVT 527
PGPVQ+ G +T
Sbjct: 528 LYPGPVQYFGSSEIVDEIT 546
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + V + H+ + + LE+ +
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGS--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K L ++GLV+IGG D +Y+ A+ E
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGG-----DGSYMGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVA- 265
P VGVP T++ D+ + +GFDT I + A S E+ + E +
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGR 171
Query: 266 -ASKLTL-----------------FDLTKQICDAVQARAEQDKNHGVILLPEGL 301
A + L +D+ +I ++ E+ K H +I++ EG+
Sbjct: 172 HAGDIALWAGLAGGAESILIPEADYDM-HEIIARLKRGHERGKKHSIIIVAEGV 224
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 10/170 (5%)
Query: 89 VGIVFCGRQSPGGHNVVWGL-YDALKLHNPKSTXXXXXXX--XXXXXAQKTLEVTKEILS 145
+GIV CG PG ++V+ + + ++N K +Q +E+ + ++
Sbjct: 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVT 159
Query: 146 TYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE 205
+ GG +LG ++ E V+ + L ++ L +GG + A +++
Sbjct: 160 NIHHYGG-TILGSSRGPQDPKEMVDT----LERLGVNILFTVGGDGTQRGALVISQEAKR 214
Query: 206 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSA 255
V GVP T++ DL F GF T + Q I +A+SA
Sbjct: 215 RGVDISVFGVPKTIDNDL--SFSHRTFGFQTAVEKAVQAIRAAYAEAVSA 262
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 32/234 (13%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K ++GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGG-----DGSYQGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEK--------- 257
P VGVP T++ D+ + +GFDT I + A S E+
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGR 171
Query: 258 ----VILGEEVAASKLTL------FDLTKQICDAVQARAEQDKNHGVILLPEGL 301
+ L +A T+ +D+ I + E+ K H +I++ EG+
Sbjct: 172 HAGDIALWSGLAGGAETILIPEADYDMNDVIARLKRGH-ERGKKHSIIIVAEGV 224
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 32/234 (13%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K ++GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGG-----DGSYQGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKV----ILGE 262
P VGVP T++ D+ + +GFDT I + A S E+ ++G
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHERTWVIEVMGR 171
Query: 263 E---------VAASKLTL------FDLTKQICDAVQARAEQDKNHGVILLPEGL 301
+A T+ +D+ I + E+ K H +I++ EG+
Sbjct: 172 HAGDIALYSGLAGGAETILIPEADYDMNDVIARLKRGH-ERGKKHSIIIVAEGV 224
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 28/151 (18%)
Query: 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVET 230
A + K +D +V+IGG S A L + +G+P T++ D+ + +
Sbjct: 84 AGIEQLKKHGIDAVVVIGGDGSYHGALQLT------RHGFNSIGLPGTIDNDIP--YTDA 135
Query: 231 NVGFDTICKVNSQLISNVCTDALSAEKVIL---------------GEEVAASKLTL---- 271
+G+DT C I + A S +V + G A + +
Sbjct: 136 TIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVMGRNCGDIAMRVGVACGADAIVIPERP 195
Query: 272 FDLTKQICDAVQARAEQDKNHGVILLPEGLI 302
+D+ ++I + ++ E K+HG++++ EG++
Sbjct: 196 YDV-EEIANRLKQAQESGKDHGLVVVAEGVM 225
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 32/234 (13%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K + GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGG-----DGSYQGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEK--------- 257
P VGVP T++ D+ + +GFDT I + A S E+
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGR 171
Query: 258 ----VILGEEVAASKLTL------FDLTKQICDAVQARAEQDKNHGVILLPEGL 301
+ L +A T+ +D+ I + E+ K H +I++ EG+
Sbjct: 172 HAGDIALWSGLAGGAETILIPEADYDMNDVIARLKRGH-ERGKKHSIIIVAEGV 224
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE---TF 203
+ QGG + + ++ EQ++A +T N+ GLVIIGG + T L E F
Sbjct: 459 WTGQGGSKLGSKRTLPKKSFEQISANIT---KFNIQGLVIIGGFEAYTGGLELMEGRKQF 515
Query: 204 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238
E P V+ V+ N + V + +TIC
Sbjct: 516 DELCIPFVVIPATVSNNVPGSDFSVGADTALNTIC 550
>pdb|1I4G|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4G|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4H|A Chain A, Crystal Structure Of Zn2+ Soaked Staphylococcal
Enterotoxin A Mutant H187a
pdb|1I4H|B Chain B, Crystal Structure Of Zn2+ Soaked Staphylococcal
Enterotoxin A Mutant H187a
Length = 233
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 389 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 448
YKGKK + ++GYQ G P+K C Y V H + K P N
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 128
Query: 449 KWRCGAAPITSMMTVKRWSQN 469
W G + TVK +N
Sbjct: 129 LWLDGKQNTVPLETVKTNKKN 149
>pdb|1ESF|A Chain A, Staphylococcal Enterotoxin A
pdb|1ESF|B Chain B, Staphylococcal Enterotoxin A
pdb|1SXT|A Chain A, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
pdb|1SXT|B Chain B, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
Length = 233
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 389 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 448
YKGKK + ++GYQ G P+K C Y V H + K P N
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 128
Query: 449 KWRCGAAPITSMMTVKRWSQN 469
W G + TVK +N
Sbjct: 129 LWLDGKQNTVPLETVKTNKKN 149
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 409 LPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 465
+ SK D + AY +G G N M T+ + +W+ G A ++ + V++
Sbjct: 305 IASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEK 361
>pdb|1LO5|D Chain D, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
Length = 233
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 389 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 448
YKGKK + ++GYQ G P+K C Y V H + K P N
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 128
Query: 449 KWRCGAAPITSMMTVKRWSQN 469
W G + TVK +N
Sbjct: 129 LWLDGKQNTVPLETVKTNKKN 149
>pdb|3N0S|A Chain A, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|D Chain D, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|C Chain C, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|B Chain B, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
Length = 268
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVALSEVRSG 193
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|3E4F|A Chain A, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
pdb|3E4F|B Chain B, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
Length = 265
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 131 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSG 190
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 191 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 229
>pdb|3IJW|A Chain A, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3IJW|B Chain B, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3SLF|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
pdb|3SLF|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
Length = 268
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSG 193
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|3KZL|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|D Chain D, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|C Chain C, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3SLB|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|D Chain D, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|C Chain C, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
Length = 268
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVGLSEVRSG 193
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 134 QKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNA-ALTACKNLNLDGLVIIGGVTS 192
+ +++ + +S N+GG LG + E + A A+ K +D LV+IGG
Sbjct: 48 DRMVQLDRYSVSDMINRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGG--- 103
Query: 193 NTDAAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236
D +Y+ A E P +G+P T++ D+K + +GF T
Sbjct: 104 --DGSYMGAMRLTEMGFPC--IGLPGTIDNDIKG--TDYTIGFFT 142
>pdb|1DYQ|A Chain A, Staphylococcal Enterotoxin A Mutant Vaccine
Length = 234
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 389 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 448
YKGKK + + GYQ G P+K C Y V H + K P N
Sbjct: 81 YKGKKVDLYGAYAGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 129
Query: 449 KWRCGAAPITSMMTVKRWSQN 469
W G + TVK +N
Sbjct: 130 LWLDGKQNTVPLETVKTNKKN 150
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 298 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 346
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 255 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 300
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 298 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 346
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 255 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 300
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 298 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 346
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 298 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 346
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 298 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 346
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3IT9|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
pdb|3IT9|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
pdb|3IT9|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
pdb|3IT9|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
pdb|3ITA|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
pdb|3ITA|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
pdb|3ITA|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
pdb|3ITA|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
pdb|3ITB|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
pdb|3ITB|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
pdb|3ITB|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
pdb|3ITB|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
Length = 352
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 266 ASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKE 314
A KL L + T Q + A + + LL + LI +PE YA+ KE
Sbjct: 133 AKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKE 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,776,997
Number of Sequences: 62578
Number of extensions: 673261
Number of successful extensions: 1638
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 41
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)