Query 007819
Match_columns 588
No_of_seqs 256 out of 1267
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 15:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03028 pyrophosphate--fructo 100.0 5E-153 1E-157 1266.9 57.9 581 8-588 1-610 (610)
2 PLN02251 pyrophosphate-depende 100.0 2E-134 4E-139 1111.3 51.0 509 11-534 29-566 (568)
3 PTZ00287 6-phosphofructokinase 100.0 2E-132 5E-137 1155.7 45.2 565 7-582 760-1402(1419)
4 cd00765 Pyrophosphate_PFK Phos 100.0 4E-131 8E-136 1083.1 50.9 508 9-531 1-550 (550)
5 PRK07085 diphosphate--fructose 100.0 4E-130 9E-135 1078.5 51.2 509 9-534 1-550 (555)
6 PTZ00468 phosphofructokinase f 100.0 1E-129 3E-134 1125.2 53.8 563 10-583 30-1278(1328)
7 TIGR02477 PFKA_PPi diphosphate 100.0 6E-129 1E-133 1067.2 49.6 504 14-532 1-539 (539)
8 PTZ00287 6-phosphofructokinase 100.0 2E-117 3E-122 1031.6 49.3 503 10-533 105-638 (1419)
9 cd00363 PFK Phosphofructokinas 100.0 8.9E-71 1.9E-75 580.1 32.9 315 87-496 1-337 (338)
10 PLN02564 6-phosphofructokinase 100.0 1.6E-69 3.5E-74 585.7 37.9 372 62-498 66-442 (484)
11 PRK14072 6-phosphofructokinase 100.0 2.6E-68 5.6E-73 574.0 35.2 342 86-465 3-360 (416)
12 PRK06830 diphosphate--fructose 100.0 1E-67 2.3E-72 569.7 37.3 366 62-497 59-432 (443)
13 PTZ00286 6-phospho-1-fructokin 100.0 3.6E-67 7.7E-72 568.3 38.3 363 65-498 69-437 (459)
14 PLN02884 6-phosphofructokinase 100.0 1.4E-66 3E-71 557.6 36.7 359 67-497 37-403 (411)
15 COG0205 PfkA 6-phosphofructoki 100.0 2.1E-66 4.5E-71 543.4 27.6 321 86-495 2-344 (347)
16 TIGR02483 PFK_mixed phosphofru 100.0 3.7E-65 8E-70 533.9 32.4 301 88-460 1-323 (324)
17 PRK14071 6-phosphofructokinase 100.0 3.6E-64 7.8E-69 533.2 35.2 337 85-499 3-355 (360)
18 PRK06555 pyrophosphate--fructo 100.0 1.4E-63 3.1E-68 530.4 36.3 350 86-496 3-393 (403)
19 PRK03202 6-phosphofructokinase 100.0 1.2E-63 2.5E-68 521.5 32.9 282 87-463 2-303 (320)
20 TIGR02482 PFKA_ATP 6-phosphofr 100.0 4.5E-63 9.7E-68 512.9 32.6 294 88-460 1-300 (301)
21 cd00763 Bacterial_PFK Phosphof 100.0 7E-63 1.5E-67 515.1 32.5 296 87-464 1-302 (317)
22 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.2E-59 4.7E-64 533.4 34.6 333 87-510 1-381 (745)
23 PF00365 PFK: Phosphofructokin 100.0 1E-58 2.2E-63 477.6 28.8 263 87-431 1-282 (282)
24 cd00764 Eukaryotic_PFK Phospho 100.0 3E-58 6.5E-63 521.8 34.9 334 85-506 2-380 (762)
25 PTZ00468 phosphofructokinase f 100.0 1.1E-59 2.4E-64 545.1 23.0 253 269-531 312-564 (1328)
26 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.1E-55 2.4E-60 503.1 34.8 319 83-465 386-718 (745)
27 cd00764 Eukaryotic_PFK Phospho 100.0 1.2E-52 2.7E-57 476.1 29.4 315 83-462 386-717 (762)
28 KOG2440 Pyrophosphate-dependen 100.0 1.1E-53 2.4E-58 470.7 4.2 558 10-579 45-662 (666)
29 KOG2440 Pyrophosphate-dependen 99.9 4.6E-26 1E-30 252.4 16.1 282 91-435 1-305 (666)
30 COG3199 Predicted inorganic po 90.2 0.51 1.1E-05 50.4 5.8 74 164-251 84-157 (355)
31 PRK00561 ppnK inorganic polyph 90.2 0.44 9.4E-06 49.4 5.2 56 167-239 15-75 (259)
32 PRK04761 ppnK inorganic polyph 90.2 0.61 1.3E-05 48.0 6.2 55 166-237 5-65 (246)
33 PRK04885 ppnK inorganic polyph 89.2 1.3 2.7E-05 46.2 7.7 69 166-249 14-91 (265)
34 cd01537 PBP1_Repressors_Sugar_ 88.9 11 0.00024 36.5 13.9 124 88-261 1-124 (264)
35 PF02844 GARS_N: Phosphoribosy 87.0 2.4 5.2E-05 37.8 7.0 93 87-216 1-93 (100)
36 PF01513 NAD_kinase: ATP-NAD k 86.8 0.54 1.2E-05 49.0 3.3 38 174-216 70-107 (285)
37 PRK14077 pnk inorganic polypho 86.7 2.5 5.5E-05 44.4 8.2 53 180-249 64-118 (287)
38 cd06321 PBP1_ABC_sugar_binding 84.2 41 0.00088 33.5 15.3 127 88-261 1-127 (271)
39 PRK14075 pnk inorganic polypho 83.6 1.9 4.2E-05 44.4 5.5 40 180-239 41-80 (256)
40 PF00465 Fe-ADH: Iron-containi 82.7 2.4 5.2E-05 45.6 6.0 58 165-222 63-134 (366)
41 PLN02929 NADH kinase 82.4 1.5 3.3E-05 46.4 4.3 54 180-239 64-123 (301)
42 PRK03372 ppnK inorganic polyph 81.2 2.6 5.7E-05 44.7 5.5 53 180-249 72-126 (306)
43 cd08180 PDD 1,3-propanediol de 80.6 4.2 9E-05 43.3 6.9 54 165-218 63-118 (332)
44 PRK01911 ppnK inorganic polyph 80.5 3.6 7.7E-05 43.4 6.2 55 180-251 64-120 (292)
45 PRK02649 ppnK inorganic polyph 80.1 3.5 7.6E-05 43.7 6.0 52 180-248 68-121 (305)
46 PLN02935 Bifunctional NADH kin 79.3 3.5 7.6E-05 46.6 5.9 53 180-249 262-316 (508)
47 PRK03501 ppnK inorganic polyph 79.2 3.9 8.5E-05 42.5 5.9 56 168-238 18-82 (264)
48 cd08184 Fe-ADH3 Iron-containin 78.7 16 0.00034 39.5 10.5 55 165-219 63-133 (347)
49 cd08551 Fe-ADH iron-containing 78.6 5.1 0.00011 43.2 6.9 57 165-221 65-134 (370)
50 cd08189 Fe-ADH5 Iron-containin 78.3 5.7 0.00012 43.0 7.1 55 165-219 68-136 (374)
51 cd08177 MAR Maleylacetate redu 78.0 4.7 0.0001 43.1 6.3 53 165-222 62-114 (337)
52 PRK04539 ppnK inorganic polyph 77.6 2.4 5.2E-05 44.8 3.8 42 180-238 68-109 (296)
53 cd08172 GlyDH-like1 Glycerol d 77.4 5.4 0.00012 42.7 6.5 54 164-222 60-113 (347)
54 PRK02231 ppnK inorganic polyph 77.2 2.5 5.4E-05 44.2 3.8 42 180-238 42-83 (272)
55 cd07766 DHQ_Fe-ADH Dehydroquin 76.4 5.7 0.00012 42.0 6.4 55 165-222 63-117 (332)
56 PRK00843 egsA NAD(P)-dependent 76.0 6 0.00013 42.5 6.5 54 164-222 71-124 (350)
57 PRK14076 pnk inorganic polypho 75.7 8.5 0.00018 44.3 7.9 42 180-238 348-389 (569)
58 cd08173 Gro1PDH Sn-glycerol-1- 75.3 6.3 0.00014 42.1 6.4 55 165-224 63-117 (339)
59 cd08186 Fe-ADH8 Iron-containin 75.1 8 0.00017 42.1 7.2 54 165-218 69-136 (383)
60 PRK03378 ppnK inorganic polyph 75.1 3.3 7.1E-05 43.7 4.1 43 180-239 63-105 (292)
61 PRK15454 ethanol dehydrogenase 74.7 7.3 0.00016 42.7 6.8 38 165-202 91-128 (395)
62 cd08193 HVD 5-hydroxyvalerate 74.6 7.6 0.00017 42.0 6.9 55 165-219 68-135 (376)
63 PF07905 PucR: Purine cataboli 74.5 19 0.00041 32.8 8.4 73 142-217 34-107 (123)
64 cd08179 NADPH_BDH NADPH-depend 74.4 8 0.00017 41.9 7.0 37 165-201 66-102 (375)
65 PRK03708 ppnK inorganic polyph 74.2 2.4 5.2E-05 44.3 2.8 43 179-239 56-98 (277)
66 PRK01231 ppnK inorganic polyph 73.6 6.6 0.00014 41.5 5.9 54 180-250 62-117 (295)
67 cd08170 GlyDH Glycerol dehydro 73.4 6.8 0.00015 41.9 6.1 50 165-219 62-111 (351)
68 PF13407 Peripla_BP_4: Peripla 73.4 94 0.002 30.6 13.9 127 89-261 1-128 (257)
69 cd08195 DHQS Dehydroquinate sy 73.2 7.1 0.00015 41.8 6.1 53 164-219 66-121 (345)
70 PRK09860 putative alcohol dehy 73.0 9.4 0.0002 41.6 7.1 55 165-219 73-140 (383)
71 cd08178 AAD_C C-terminal alcoh 72.9 9 0.0002 41.9 7.0 37 165-201 63-99 (398)
72 cd08199 EEVS 2-epi-5-epi-valio 72.4 6.1 0.00013 42.7 5.4 53 164-219 68-124 (354)
73 TIGR02638 lactal_redase lactal 72.4 9.1 0.0002 41.6 6.8 54 165-218 71-139 (379)
74 cd08185 Fe-ADH1 Iron-containin 72.3 8.8 0.00019 41.6 6.7 38 165-202 68-105 (380)
75 TIGR01357 aroB 3-dehydroquinat 72.3 8 0.00017 41.3 6.3 52 165-219 63-117 (344)
76 cd08182 HEPD Hydroxyethylphosp 72.0 9.3 0.0002 41.2 6.7 55 165-219 62-133 (367)
77 cd08176 LPO Lactadehyde:propan 72.0 9.5 0.00021 41.3 6.8 54 165-218 70-136 (377)
78 cd08181 PPD-like 1,3-propanedi 71.4 11 0.00023 40.7 7.0 55 165-219 68-134 (357)
79 cd08194 Fe-ADH6 Iron-containin 71.1 10 0.00022 41.0 6.9 54 165-218 65-131 (375)
80 cd08196 DHQS-like1 Dehydroquin 70.9 10 0.00022 40.9 6.7 70 164-241 57-129 (346)
81 cd08171 GlyDH-like2 Glycerol d 69.9 9.1 0.0002 41.0 6.0 50 165-219 63-112 (345)
82 PRK15138 aldehyde reductase; P 69.5 12 0.00025 41.0 6.8 38 165-202 70-107 (387)
83 PRK00002 aroB 3-dehydroquinate 68.4 10 0.00023 40.8 6.2 52 165-219 74-128 (358)
84 PRK09423 gldA glycerol dehydro 68.3 10 0.00022 41.0 6.0 50 165-219 69-118 (366)
85 cd08549 G1PDH_related Glycerol 68.1 21 0.00045 38.1 8.3 53 164-222 65-117 (332)
86 cd08183 Fe-ADH2 Iron-containin 68.0 12 0.00027 40.5 6.6 38 165-202 60-97 (374)
87 PRK13951 bifunctional shikimat 67.5 11 0.00024 42.6 6.4 113 119-240 172-289 (488)
88 PRK02155 ppnK NAD(+)/NADH kina 67.5 5.6 0.00012 41.9 3.8 41 180-237 63-103 (291)
89 cd06307 PBP1_uncharacterized_s 66.3 96 0.0021 30.9 12.4 60 167-235 46-105 (275)
90 PRK10624 L-1,2-propanediol oxi 66.3 15 0.00032 40.0 6.9 54 165-218 72-140 (382)
91 cd08550 GlyDH-like Glycerol_de 66.1 12 0.00026 40.1 6.1 53 165-222 62-114 (349)
92 cd08192 Fe-ADH7 Iron-containin 65.1 17 0.00036 39.3 6.9 39 165-203 66-104 (370)
93 PRK11914 diacylglycerol kinase 64.9 17 0.00036 38.1 6.7 61 166-236 50-110 (306)
94 TIGR01917 gly_red_sel_B glycin 64.3 21 0.00045 39.6 7.4 46 168-215 324-370 (431)
95 PLN02727 NAD kinase 63.8 6.7 0.00015 47.2 3.8 53 180-249 743-797 (986)
96 TIGR03405 Phn_Fe-ADH phosphona 63.6 19 0.00041 38.8 7.0 38 165-202 63-102 (355)
97 cd08197 DOIS 2-deoxy-scyllo-in 63.1 15 0.00033 39.7 6.1 52 165-219 66-120 (355)
98 cd08191 HHD 6-hydroxyhexanoate 62.9 19 0.00042 39.2 6.9 54 165-218 64-130 (386)
99 COG0371 GldA Glycerol dehydrog 62.6 21 0.00045 38.9 6.9 55 165-224 69-123 (360)
100 PLN02834 3-dehydroquinate synt 61.7 17 0.00036 40.5 6.3 53 164-219 144-199 (433)
101 cd08190 HOT Hydroxyacid-oxoaci 61.3 21 0.00045 39.4 6.9 36 165-200 65-100 (414)
102 cd06306 PBP1_TorT-like TorT-li 61.2 75 0.0016 31.8 10.5 73 166-247 43-117 (268)
103 PRK06555 pyrophosphate--fructo 61.2 11 0.00025 41.5 4.8 37 258-303 235-271 (403)
104 PRK14072 6-phosphofructokinase 60.7 11 0.00024 41.7 4.7 37 258-303 213-249 (416)
105 cd08175 G1PDH Glycerol-1-phosp 60.7 16 0.00035 39.1 5.8 49 164-218 65-113 (348)
106 COG3155 ElbB Uncharacterized p 60.7 32 0.00069 33.4 7.0 134 86-235 1-156 (217)
107 cd01391 Periplasmic_Binding_Pr 60.6 1.3E+02 0.0028 28.6 11.6 92 88-220 1-93 (269)
108 cd08188 Fe-ADH4 Iron-containin 60.5 23 0.0005 38.4 7.0 55 165-219 70-137 (377)
109 PRK13054 lipid kinase; Reviewe 60.0 20 0.00044 37.4 6.3 53 170-224 46-99 (300)
110 cd08187 BDH Butanol dehydrogen 59.9 22 0.00047 38.7 6.7 55 165-219 71-138 (382)
111 cd08198 DHQS-like2 Dehydroquin 59.5 20 0.00044 39.1 6.3 67 166-240 82-151 (369)
112 COG1454 EutG Alcohol dehydroge 59.0 33 0.00071 37.6 7.8 40 165-204 71-110 (377)
113 PF02601 Exonuc_VII_L: Exonucl 59.0 68 0.0015 33.8 10.1 102 83-221 11-120 (319)
114 TIGR03822 AblA_like_2 lysine-2 58.1 2.5E+02 0.0055 29.8 14.2 163 90-265 139-308 (321)
115 cd01538 PBP1_ABC_xylose_bindin 58.1 65 0.0014 32.7 9.5 103 88-236 1-103 (288)
116 cd08169 DHQ-like Dehydroquinat 57.3 24 0.00052 38.0 6.4 53 164-219 64-119 (344)
117 PRK13337 putative lipid kinase 57.2 19 0.00041 37.7 5.5 53 169-224 46-98 (304)
118 cd06320 PBP1_allose_binding Pe 56.4 1.2E+02 0.0026 30.2 11.0 92 88-219 1-92 (275)
119 PF02401 LYTB: LytB protein; 56.2 16 0.00035 38.4 4.7 49 167-217 197-245 (281)
120 cd06281 PBP1_LacI_like_5 Ligan 55.8 1.3E+02 0.0028 29.8 11.1 90 88-220 1-90 (269)
121 cd07995 TPK Thiamine pyrophosp 55.5 44 0.00096 33.1 7.5 103 90-202 1-117 (208)
122 PRK06203 aroB 3-dehydroquinate 54.7 24 0.00053 38.7 6.0 50 166-218 94-146 (389)
123 PF01761 DHQ_synthase: 3-dehyd 54.6 21 0.00045 37.1 5.1 69 164-240 10-81 (260)
124 PRK02645 ppnK inorganic polyph 54.3 13 0.00029 39.3 3.8 43 180-238 57-99 (305)
125 TIGR00147 lipid kinase, YegS/R 54.1 15 0.00033 38.0 4.2 45 175-224 52-98 (293)
126 PF00781 DAGK_cat: Diacylglyce 53.0 12 0.00027 33.9 2.9 52 181-240 55-108 (130)
127 cd01575 PBP1_GntR Ligand-bindi 52.6 1.7E+02 0.0037 28.7 11.3 83 89-215 2-84 (268)
128 PRK01185 ppnK inorganic polyph 52.4 11 0.00025 39.2 2.9 39 180-238 52-90 (271)
129 cd06289 PBP1_MalI_like Ligand- 52.3 76 0.0016 31.2 8.7 59 167-235 42-100 (268)
130 COG1570 XseA Exonuclease VII, 52.0 1E+02 0.0023 34.5 10.2 95 83-214 132-230 (440)
131 PRK13055 putative lipid kinase 52.0 26 0.00055 37.4 5.5 52 170-224 49-100 (334)
132 PRK02261 methylaspartate mutas 51.7 1.9E+02 0.0042 26.9 10.7 116 86-218 3-121 (137)
133 PTZ00286 6-phospho-1-fructokin 51.5 21 0.00046 40.1 4.9 40 256-304 278-317 (459)
134 PRK15408 autoinducer 2-binding 50.6 3.4E+02 0.0073 28.9 15.3 107 86-237 23-129 (336)
135 COG0061 nadF NAD kinase [Coenz 50.1 16 0.00035 38.2 3.6 57 179-254 54-110 (281)
136 PRK13057 putative lipid kinase 50.1 37 0.0008 35.2 6.2 59 166-235 37-95 (287)
137 cd06315 PBP1_ABC_sugar_binding 49.1 1.9E+02 0.0041 29.1 11.2 87 87-215 1-87 (280)
138 cd06305 PBP1_methylthioribose_ 48.4 1.7E+02 0.0037 28.8 10.6 126 88-261 1-126 (273)
139 cd06298 PBP1_CcpA_like Ligand- 48.1 82 0.0018 31.0 8.2 80 166-261 41-122 (268)
140 PLN02958 diacylglycerol kinase 48.1 1E+02 0.0022 34.9 9.7 112 107-225 100-215 (481)
141 PLN02884 6-phosphofructokinase 48.0 23 0.0005 39.3 4.5 42 256-303 245-286 (411)
142 PRK10586 putative oxidoreducta 47.9 37 0.0008 36.9 6.0 57 165-227 72-128 (362)
143 cd06299 PBP1_LacI_like_13 Liga 47.4 1.2E+02 0.0025 29.9 9.2 100 88-236 1-100 (265)
144 TIGR01918 various_sel_PB selen 47.2 72 0.0016 35.5 8.0 159 48-216 183-371 (431)
145 cd00537 MTHFR Methylenetetrahy 46.9 39 0.00085 34.9 5.8 90 121-216 31-137 (274)
146 PRK13805 bifunctional acetalde 46.8 45 0.00097 40.4 7.1 37 165-201 524-560 (862)
147 PRK10355 xylF D-xylose transpo 46.7 3.4E+02 0.0074 28.5 13.0 93 85-219 24-116 (330)
148 cd08174 G1PDH-like Glycerol-1- 46.2 36 0.00078 36.2 5.5 54 167-225 61-115 (331)
149 PRK12767 carbamoyl phosphate s 46.0 2.8E+02 0.006 28.8 12.1 42 165-207 54-95 (326)
150 TIGR00732 dprA DNA protecting 45.1 2.8E+02 0.006 28.0 11.4 140 60-221 26-193 (220)
151 PRK13059 putative lipid kinase 45.0 42 0.00091 35.1 5.7 50 178-235 54-103 (295)
152 PRK05670 anthranilate synthase 44.8 36 0.00078 33.1 4.9 50 177-241 40-89 (189)
153 TIGR03107 glu_aminopep glutamy 44.7 1.2E+02 0.0026 32.8 9.3 111 102-216 183-311 (350)
154 PRK05784 phosphoribosylamine-- 44.5 1.1E+02 0.0023 34.8 9.2 44 168-216 57-100 (486)
155 PF00532 Peripla_BP_1: Peripla 44.4 1.8E+02 0.0039 29.9 10.3 161 87-303 2-163 (279)
156 TIGR03702 lip_kinase_YegS lipi 44.3 49 0.0011 34.4 6.1 53 170-224 42-95 (293)
157 PRK14021 bifunctional shikimat 44.2 48 0.0011 38.0 6.5 52 165-219 251-305 (542)
158 PF04263 TPK_catalytic: Thiami 43.9 71 0.0015 29.3 6.4 88 118-210 16-118 (123)
159 TIGR01162 purE phosphoribosyla 43.8 54 0.0012 31.6 5.7 49 164-218 37-85 (156)
160 PF13685 Fe-ADH_2: Iron-contai 42.9 28 0.00061 36.0 3.9 55 165-224 60-114 (250)
161 PLN02564 6-phosphofructokinase 42.9 30 0.00065 39.2 4.4 41 256-302 278-318 (484)
162 PRK07952 DNA replication prote 42.5 3.9E+02 0.0085 27.4 12.2 103 181-299 99-203 (244)
163 PRK06395 phosphoribosylamine-- 42.3 1E+02 0.0022 34.3 8.5 97 86-218 2-98 (435)
164 PRK06830 diphosphate--fructose 42.0 42 0.00091 37.6 5.4 41 257-303 275-315 (443)
165 TIGR00237 xseA exodeoxyribonuc 41.7 2E+02 0.0044 32.0 10.7 101 84-221 127-232 (432)
166 PRK00861 putative lipid kinase 41.2 43 0.00093 34.9 5.1 57 170-236 47-103 (300)
167 smart00729 Elp3 Elongator prot 41.2 2.5E+02 0.0054 26.2 10.1 45 165-209 134-182 (216)
168 TIGR02637 RhaS rhamnose ABC tr 40.7 2.1E+02 0.0046 29.1 10.1 45 167-215 43-87 (302)
169 cd06310 PBP1_ABC_sugar_binding 39.6 3.8E+02 0.0083 26.4 14.1 88 88-215 1-88 (273)
170 PRK12361 hypothetical protein; 39.6 42 0.0009 38.3 5.1 51 169-224 286-336 (547)
171 PRK08939 primosomal protein Dn 39.3 88 0.0019 33.2 7.1 112 170-299 141-259 (306)
172 cd01391 Periplasmic_Binding_Pr 39.2 1.9E+02 0.0042 27.3 9.0 105 104-218 111-219 (269)
173 PRK05637 anthranilate synthase 38.8 63 0.0014 32.3 5.6 53 174-241 38-90 (208)
174 PRK00286 xseA exodeoxyribonucl 38.8 2E+02 0.0043 31.9 10.1 102 84-222 133-238 (438)
175 TIGR00215 lpxB lipid-A-disacch 38.8 75 0.0016 34.5 6.7 132 91-251 8-145 (385)
176 cd06300 PBP1_ABC_sugar_binding 38.2 3.5E+02 0.0077 26.6 11.1 95 88-219 1-95 (272)
177 smart00046 DAGKc Diacylglycero 38.1 51 0.0011 29.9 4.5 43 180-225 49-94 (124)
178 TIGR00566 trpG_papA glutamine 38.1 49 0.0011 32.2 4.7 52 175-241 38-89 (188)
179 PF06995 Phage_P2_GpU: Phage P 37.6 23 0.00049 32.2 2.1 61 487-547 7-70 (121)
180 cd06533 Glyco_transf_WecG_TagA 37.3 94 0.002 29.9 6.4 88 86-189 46-133 (171)
181 PF00731 AIRC: AIR carboxylase 36.9 46 0.00099 31.9 4.1 48 164-217 39-86 (150)
182 cd06353 PBP1_BmpA_Med_like Per 36.8 3.2E+02 0.007 27.8 10.6 89 85-216 119-207 (258)
183 TIGR01378 thi_PPkinase thiamin 36.6 2.3E+02 0.0051 28.0 9.3 81 119-202 19-113 (203)
184 PRK05647 purN phosphoribosylgl 35.0 1.7E+02 0.0037 29.0 8.0 86 87-188 2-88 (200)
185 CHL00101 trpG anthranilate syn 34.9 54 0.0012 32.0 4.4 49 176-239 39-87 (190)
186 COG1609 PurR Transcriptional r 34.9 85 0.0018 33.4 6.2 103 84-235 56-158 (333)
187 cd06267 PBP1_LacI_sugar_bindin 34.8 2.2E+02 0.0048 27.4 8.8 84 88-215 1-84 (264)
188 TIGR00288 conserved hypothetic 33.6 49 0.0011 32.0 3.7 54 168-224 90-146 (160)
189 PRK01045 ispH 4-hydroxy-3-meth 33.4 53 0.0011 34.9 4.3 52 167-220 198-249 (298)
190 KOG4435 Predicted lipid kinase 33.3 80 0.0017 35.0 5.6 53 165-220 102-154 (535)
191 PRK12360 4-hydroxy-3-methylbut 33.3 45 0.00097 35.1 3.7 54 167-222 197-250 (281)
192 PRK15395 methyl-galactoside AB 33.1 4E+02 0.0088 27.8 11.0 92 85-217 23-114 (330)
193 KOG1838 Alpha/beta hydrolase [ 33.0 5.1E+02 0.011 28.9 11.8 98 91-215 128-228 (409)
194 COG0763 LpxB Lipid A disacchar 32.9 91 0.002 34.3 6.0 116 87-215 2-117 (381)
195 cd01574 PBP1_LacI Ligand-bindi 32.9 4.7E+02 0.01 25.5 11.3 109 88-245 1-111 (264)
196 cd06292 PBP1_LacI_like_10 Liga 32.7 2.1E+02 0.0045 28.3 8.4 90 89-219 2-93 (273)
197 PF13380 CoA_binding_2: CoA bi 32.7 98 0.0021 27.9 5.4 44 165-214 64-107 (116)
198 TIGR00238 KamA family protein. 32.6 1.6E+02 0.0036 31.5 8.0 114 89-208 161-282 (331)
199 PLN02327 CTP synthase 32.6 50 0.0011 38.0 4.1 68 168-255 352-421 (557)
200 PRK06774 para-aminobenzoate sy 32.4 50 0.0011 32.1 3.7 51 175-240 38-88 (191)
201 PRK10703 DNA-binding transcrip 32.1 5.8E+02 0.013 26.3 13.5 88 85-215 58-145 (341)
202 PRK06186 hypothetical protein; 31.9 85 0.0018 32.1 5.3 59 180-256 53-113 (229)
203 PLN02735 carbamoyl-phosphate s 31.9 2.7E+02 0.0059 35.0 10.6 47 169-215 638-692 (1102)
204 PRK00035 hemH ferrochelatase; 31.9 6.1E+02 0.013 26.9 12.1 188 88-302 7-200 (333)
205 cd06275 PBP1_PurR Ligand-bindi 31.8 1.3E+02 0.0028 29.6 6.7 85 89-216 2-86 (269)
206 cd03411 Ferrochelatase_N Ferro 31.8 1.3E+02 0.0028 28.5 6.3 117 89-216 3-120 (159)
207 PRK12815 carB carbamoyl phosph 31.8 2.5E+02 0.0055 35.0 10.4 108 84-216 5-119 (1068)
208 COG1844 Uncharacterized protei 31.4 4E+02 0.0087 24.6 8.8 90 183-301 2-91 (125)
209 cd02072 Glm_B12_BD B12 binding 31.2 4.4E+02 0.0095 24.5 9.9 110 89-218 2-117 (128)
210 COG3961 Pyruvate decarboxylase 30.9 6.4E+02 0.014 29.1 12.2 194 104-321 6-235 (557)
211 PRK11096 ansB L-asparaginase I 30.8 1.1E+02 0.0024 33.1 6.3 48 165-214 83-132 (347)
212 COG0482 TrmU Predicted tRNA(5- 30.5 2.1E+02 0.0045 31.3 8.2 68 85-186 2-69 (356)
213 cd06301 PBP1_rhizopine_binding 30.4 4E+02 0.0088 26.2 10.0 88 88-216 1-88 (272)
214 PRK03359 putative electron tra 30.2 1.3E+02 0.0029 31.2 6.5 53 171-224 71-128 (256)
215 cd02071 MM_CoA_mut_B12_BD meth 29.9 4E+02 0.0087 23.9 9.0 53 144-197 43-96 (122)
216 PRK05294 carB carbamoyl phosph 29.8 3.2E+02 0.0069 34.1 10.8 46 169-220 618-665 (1066)
217 cd06317 PBP1_ABC_sugar_binding 29.7 4.1E+02 0.009 26.0 9.9 85 89-215 2-87 (275)
218 cd06312 PBP1_ABC_sugar_binding 29.6 5.5E+02 0.012 25.4 10.9 87 88-215 1-88 (271)
219 cd06308 PBP1_sensor_kinase_lik 29.6 3.2E+02 0.0068 27.0 9.1 84 167-261 43-128 (270)
220 PRK13371 4-hydroxy-3-methylbut 29.5 1.4E+02 0.003 33.0 6.7 55 167-222 275-329 (387)
221 PLN02821 1-hydroxy-2-methyl-2- 29.2 1.2E+02 0.0026 34.1 6.3 53 167-220 349-401 (460)
222 COG0504 PyrG CTP synthase (UTP 29.2 62 0.0013 36.7 4.0 101 134-256 295-403 (533)
223 PTZ00063 histone deacetylase; 29.1 1.3E+02 0.0028 33.8 6.5 58 165-227 274-331 (436)
224 COG1105 FruK Fructose-1-phosph 29.1 3.5E+02 0.0076 29.0 9.5 94 112-207 46-159 (310)
225 TIGR00676 fadh2 5,10-methylene 28.9 98 0.0021 32.1 5.4 73 142-216 48-134 (272)
226 TIGR00640 acid_CoA_mut_C methy 28.3 2.6E+02 0.0057 25.9 7.6 50 143-193 45-95 (132)
227 cd06283 PBP1_RegR_EndR_KdgR_li 28.2 1.4E+02 0.0031 29.2 6.2 99 89-236 2-100 (267)
228 PLN02335 anthranilate synthase 28.1 84 0.0018 31.6 4.6 49 176-239 58-106 (222)
229 PF04405 ScdA_N: Domain of Unk 27.6 65 0.0014 25.6 2.9 28 168-197 11-38 (56)
230 cd06282 PBP1_GntR_like_2 Ligan 27.5 5.8E+02 0.013 24.8 10.8 85 88-215 1-85 (266)
231 COG0796 MurI Glutamate racemas 27.5 3.1E+02 0.0067 28.9 8.6 89 86-215 5-97 (269)
232 cd06278 PBP1_LacI_like_2 Ligan 27.3 1.5E+02 0.0032 29.1 6.1 56 169-235 43-98 (266)
233 cd01744 GATase1_CPSase Small c 27.3 1.3E+02 0.0027 29.0 5.5 49 177-242 36-87 (178)
234 TIGR02634 xylF D-xylose ABC tr 27.3 2.1E+02 0.0046 29.4 7.6 63 165-235 39-101 (302)
235 PF02310 B12-binding: B12 bind 27.0 4.2E+02 0.0091 23.0 8.6 95 88-198 2-97 (121)
236 cd03822 GT1_ecORF704_like This 26.7 4.9E+02 0.011 26.2 10.1 112 88-219 1-115 (366)
237 COG1597 LCB5 Sphingosine kinas 26.5 1.4E+02 0.0031 31.5 6.1 100 120-236 4-105 (301)
238 KOG3857 Alcohol dehydrogenase, 26.4 1.3E+02 0.0028 32.9 5.6 39 165-203 112-150 (465)
239 cd01542 PBP1_TreR_like Ligand- 26.3 3E+02 0.0064 26.9 8.1 83 89-215 2-84 (259)
240 cd00411 Asparaginase Asparagin 26.2 1.7E+02 0.0037 31.2 6.7 49 165-215 61-111 (323)
241 PRK06835 DNA replication prote 25.7 6.7E+02 0.014 26.9 11.1 98 178-301 181-289 (329)
242 PHA02728 uncharacterized prote 25.7 36 0.00078 31.5 1.3 14 214-227 43-56 (184)
243 PF00289 CPSase_L_chain: Carba 25.5 66 0.0014 28.9 2.9 104 87-216 3-106 (110)
244 cd06167 LabA_like LabA_like pr 25.4 1.2E+02 0.0026 27.7 4.8 51 170-223 89-139 (149)
245 TIGR01501 MthylAspMutase methy 25.2 5.7E+02 0.012 23.9 11.2 103 88-207 3-110 (134)
246 cd06273 PBP1_GntR_like_1 This 25.1 3.7E+02 0.0079 26.4 8.6 43 167-215 42-84 (268)
247 PF00710 Asparaginase: Asparag 25.1 1.2E+02 0.0026 32.2 5.3 51 165-216 55-107 (313)
248 COG1979 Uncharacterized oxidor 24.9 96 0.0021 33.6 4.4 39 165-203 70-108 (384)
249 cd06277 PBP1_LacI_like_1 Ligan 24.9 1.8E+02 0.004 28.6 6.4 58 167-236 45-102 (268)
250 cd02071 MM_CoA_mut_B12_BD meth 24.7 1.5E+02 0.0031 26.8 5.1 70 134-208 9-79 (122)
251 PRK00025 lpxB lipid-A-disaccha 24.7 2.5E+02 0.0054 29.7 7.7 112 91-215 4-115 (380)
252 cd02991 UAS_ETEA UAS family, E 24.6 1.5E+02 0.0033 26.7 5.2 59 183-245 52-110 (116)
253 TIGR02955 TMAO_TorT TMAO reduc 24.6 4.8E+02 0.01 26.5 9.6 24 167-190 44-67 (295)
254 smart00870 Asparaginase Aspara 24.6 1.9E+02 0.0041 30.9 6.7 50 165-215 58-111 (323)
255 KOG2387 CTP synthase (UTP-ammo 24.6 1.9E+02 0.0041 32.6 6.6 71 165-255 350-422 (585)
256 cd06319 PBP1_ABC_sugar_binding 24.5 3.3E+02 0.0072 26.8 8.2 102 88-235 1-102 (277)
257 PF10686 DUF2493: Protein of u 24.4 3.1E+02 0.0068 22.7 6.5 57 156-216 8-64 (71)
258 PF01936 NYN: NYN domain; Int 24.3 42 0.00091 30.3 1.5 50 171-223 86-135 (146)
259 cd02202 FtsZ_type2 FtsZ is a G 24.1 6.6E+02 0.014 27.2 10.8 49 167-216 81-138 (349)
260 cd06323 PBP1_ribose_binding Pe 24.0 5.3E+02 0.011 25.1 9.5 85 89-215 2-86 (268)
261 PRK13789 phosphoribosylamine-- 23.6 3.4E+02 0.0074 30.1 8.7 94 86-215 4-98 (426)
262 TIGR02263 benz_CoA_red_C benzo 23.6 7.3E+02 0.016 27.0 11.1 116 87-215 232-357 (380)
263 PF07722 Peptidase_C26: Peptid 23.5 2.6E+02 0.0056 27.9 7.1 50 133-190 19-68 (217)
264 cd06311 PBP1_ABC_sugar_binding 23.4 5.4E+02 0.012 25.4 9.5 49 165-217 45-93 (274)
265 PRK15458 tagatose 6-phosphate 23.3 6.9E+02 0.015 28.0 10.7 129 88-252 16-159 (426)
266 TIGR00520 asnASE_II L-asparagi 23.3 1.7E+02 0.0038 31.7 6.1 49 165-215 86-138 (349)
267 PF04009 DUF356: Protein of un 23.2 4.1E+02 0.0089 24.1 7.3 89 184-301 1-90 (107)
268 cd06284 PBP1_LacI_like_6 Ligan 23.2 4.2E+02 0.0091 25.8 8.5 84 89-217 2-85 (267)
269 cd06316 PBP1_ABC_sugar_binding 22.8 7.8E+02 0.017 24.7 11.1 87 88-215 1-87 (294)
270 cd06314 PBP1_tmGBP Periplasmic 22.8 2.4E+02 0.0052 27.9 6.8 102 88-236 1-102 (271)
271 PRK11303 DNA-binding transcrip 22.6 8.3E+02 0.018 24.9 11.6 88 85-215 60-147 (328)
272 PRK06027 purU formyltetrahydro 22.6 3.5E+02 0.0076 28.4 8.1 121 49-199 62-183 (286)
273 TIGR03127 RuMP_HxlB 6-phospho 22.6 4.1E+02 0.0089 25.2 8.1 47 165-215 16-62 (179)
274 PRK07094 biotin synthase; Prov 22.5 8.8E+02 0.019 25.3 11.3 105 91-208 90-209 (323)
275 cd02069 methionine_synthase_B1 22.4 5.3E+02 0.012 25.8 9.1 94 86-194 88-181 (213)
276 COG0685 MetF 5,10-methylenetet 22.3 2.2E+02 0.0048 30.0 6.6 73 135-209 59-142 (291)
277 PRK03910 D-cysteine desulfhydr 22.2 1.4E+02 0.0031 31.7 5.2 36 180-217 183-218 (331)
278 PRK08007 para-aminobenzoate sy 22.2 1.1E+02 0.0024 29.8 4.0 53 174-241 37-89 (187)
279 TIGR00216 ispH_lytB (E)-4-hydr 22.1 1.2E+02 0.0027 31.9 4.5 52 167-220 196-247 (280)
280 cd05005 SIS_PHI Hexulose-6-pho 22.1 4.5E+02 0.0097 25.0 8.2 47 165-215 19-65 (179)
281 cd01536 PBP1_ABC_sugar_binding 21.9 7.2E+02 0.016 23.9 12.5 86 88-215 1-86 (267)
282 PRK10014 DNA-binding transcrip 21.8 8.8E+02 0.019 24.9 12.4 89 84-215 62-150 (342)
283 cd02070 corrinoid_protein_B12- 21.7 4.9E+02 0.011 25.5 8.6 92 86-193 82-176 (201)
284 PLN02735 carbamoyl-phosphate s 21.7 4.1E+02 0.0088 33.4 9.6 105 83-216 20-135 (1102)
285 TIGR02931 anfK_nitrog Fe-only 21.6 1.2E+03 0.025 26.2 12.7 195 89-319 70-283 (461)
286 PF04295 GD_AH_C: D-galactarat 21.5 9.3E+02 0.02 26.8 11.3 118 165-301 68-198 (396)
287 PRK04155 chaperone protein Hch 21.5 9.1E+02 0.02 25.4 10.9 39 169-207 134-180 (287)
288 KOG4180 Predicted kinase [Gene 21.5 47 0.001 35.7 1.3 73 137-216 45-136 (395)
289 TIGR02417 fruct_sucro_rep D-fr 21.2 2.2E+02 0.0048 29.2 6.3 104 85-236 59-162 (327)
290 TIGR01630 psiM2_ORF9 phage unc 21.2 3.1E+02 0.0067 25.1 6.6 63 155-218 18-81 (142)
291 PRK12815 carB carbamoyl phosph 21.0 3E+02 0.0065 34.4 8.3 43 168-215 618-660 (1068)
292 COG2910 Putative NADH-flavin r 20.9 5.3E+02 0.012 26.0 8.3 94 87-194 1-110 (211)
293 PRK04183 glutamyl-tRNA(Gln) am 20.9 2.4E+02 0.0052 31.5 6.7 50 165-216 134-186 (419)
294 cd06342 PBP1_ABC_LIVBP_like Ty 20.9 4.7E+02 0.01 26.6 8.7 64 147-215 159-222 (334)
295 cd03409 Chelatase_Class_II Cla 20.8 5.1E+02 0.011 21.7 7.6 36 91-126 4-41 (101)
296 cd06564 GH20_DspB_LnbB-like Gl 20.8 2.6E+02 0.0057 29.7 6.8 57 152-212 4-98 (326)
297 PRK06895 putative anthranilate 20.6 1.4E+02 0.0031 28.9 4.5 46 180-240 43-88 (190)
298 TIGR02826 RNR_activ_nrdG3 anae 20.5 2E+02 0.0044 27.1 5.3 44 165-210 47-91 (147)
299 PF00186 DHFR_1: Dihydrofolate 20.4 76 0.0016 30.5 2.4 53 168-228 79-131 (161)
300 TIGR00655 PurU formyltetrahydr 20.3 5.7E+02 0.012 26.8 9.1 96 84-204 82-178 (280)
301 PRK07649 para-aminobenzoate/an 20.3 1.1E+02 0.0025 30.0 3.7 78 139-240 11-88 (195)
302 TIGR03551 F420_cofH 7,8-dideme 20.3 6.5E+02 0.014 26.8 9.8 118 86-207 87-221 (343)
303 PRK14462 ribosomal RNA large s 20.2 2.2E+02 0.0048 31.0 6.2 35 180-216 265-299 (356)
304 TIGR01769 GGGP geranylgeranylg 20.2 3E+02 0.0064 27.7 6.6 53 167-221 11-65 (205)
No 1
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.7e-153 Score=1266.88 Aligned_cols=581 Identities=88% Similarity=1.365 Sum_probs=555.0
Q ss_pred CCCCChhhhhhhccCCCCCcCcCCCceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCe
Q 007819 8 PRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAI 87 (588)
Q Consensus 8 ~~~~s~lq~~R~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
++++|+||+.|+.|+|+||++|++..++++.|+.+++.+..++++|+++||||||+|+++|.++....|+.+.++.+..+
T Consensus 1 ~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (610)
T PLN03028 1 PRELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAV 80 (610)
T ss_pred CCCCCHHHHHHHhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCccc
Confidence 46899999999999999999999877999999999998767779999999999999999999854334677777677779
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
|||||+|||||||+||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|+++++++
T Consensus 81 rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e 160 (610)
T PLN03028 81 RVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTE 160 (610)
T ss_pred EEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n 247 (588)
++++++++|++++||+||+||||||+++|++|+|||++++++|+||||||||||||+++.+|+|||||||+++++++|+|
T Consensus 161 ~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~n 240 (610)
T PLN03028 161 QVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 240 (610)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred HHHHhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCC
Q 007819 248 VCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 300 (588)
Q Consensus 248 l~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEG 300 (588)
|++||.|+++ |+|+||+..+++||.+|++.|++.|++|++.|++||||+||||
T Consensus 241 i~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEG 320 (610)
T PLN03028 241 VCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEG 320 (610)
T ss_pred HHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999999964 7799999888999999999999999999999999999999999
Q ss_pred CcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHH
Q 007819 301 LIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEM 380 (588)
Q Consensus 301 l~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l 380 (588)
++++|||++.||+|++++++++...++..+.||||++++|++||++||+||+.+||+|||+|+++|+||++|+++|+++|
T Consensus 321 lie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL 400 (610)
T PLN03028 321 LIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEM 400 (610)
T ss_pred ccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHH
Confidence 99999999999999999998776667778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhH
Q 007819 381 NKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM 460 (588)
Q Consensus 381 ~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~ 460 (588)
.+++++|+|++.+|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++|
T Consensus 401 ~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~ 480 (610)
T PLN03028 401 NKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAM 480 (610)
T ss_pred HHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHH
Confidence 99999999999569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCCCCccceEEecccchhhhHH
Q 007819 461 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIK 540 (588)
Q Consensus 461 ~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~y~~~~~ 540 (588)
||+|++..||+.+..++|||+|++|||+|++|++|+++|++|+++|+|++||||||+||.+|++|+||.+|+++|++||+
T Consensus 481 m~~~~~~~~~~~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~~~~~~~ 560 (610)
T PLN03028 481 MSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQDYMGRIK 560 (610)
T ss_pred hhHHhhcccccccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCcccCCceEeehhhhhhHHHHH
Confidence 99999445766666899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCC
Q 007819 541 ELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASG--GQTTL 588 (588)
Q Consensus 541 ~~~~~~~~~~~~~~~g~~~~~l~~a~~~l~~~~~~l~~~~~~~--~~~~~ 588 (588)
++++||++||++||||||+|+||+|+++|+||+|+|++||||+ +++|+
T Consensus 561 ~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 610 (610)
T PLN03028 561 KLQEYLDKVRTIVKPGCSQEVLKAALSSMASVTDVLTVMSSPSNRGLTPL 610 (610)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 9999999999999999999999999999999999999999999 88775
No 2
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1.8e-134 Score=1111.25 Aligned_cols=509 Identities=41% Similarity=0.702 Sum_probs=486.4
Q ss_pred CChhhhhhhccCCCCCcCcCCCceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCeEEE
Q 007819 11 LSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVG 90 (588)
Q Consensus 11 ~s~lq~~R~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig 90 (588)
+|+||++|+.|+|+||++|+++ +++..|+.+++. .++++|+++|||||++|.++|.+... .......++|||
T Consensus 29 ~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~-----~~~~~~~~~~IG 100 (568)
T PLN02251 29 YSEVQSSRIDHALPLPSVLKGP-FKIVDGPPSSAA--GNPEEIAKLFPNLFGQPSVMLVPSQA-----DALSSDQKLKIG 100 (568)
T ss_pred cCHHHHHHHhCCCCCChhhcCc-eEEEecCccccc--CCHHHHHHhChHhhCCceEEEeeccC-----ccccccccceEE
Confidence 7999999999999999999886 899999998876 78899999999999999999998431 112234568999
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHH
Q 007819 91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVN 170 (588)
Q Consensus 91 Iv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~ 170 (588)
||+||||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++++++
T Consensus 101 Iv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~ 180 (568)
T PLN02251 101 VVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFK 180 (568)
T ss_pred EECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 007819 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT 250 (588)
Q Consensus 171 ~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~ 250 (588)
+++++|++++||+||+||||||+++|+.|+|||+++|++|+||||||||||||+++|+|+|||||||+++++++|+||++
T Consensus 181 ~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~ 260 (568)
T PLN02251 181 QAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMI 260 (568)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 251 DALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 251 dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
||.|++| |+|+||+..++++|.+|++.||+.|++|+..|++||||+||||+++
T Consensus 261 da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie 340 (568)
T PLN02251 261 DARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLID 340 (568)
T ss_pred HHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchh
Confidence 9999986 8888888888899999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCccc--cCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 007819 304 SIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMN 381 (588)
Q Consensus 304 ~ipe~~~li~el~~~l~~~~~~--~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~ 381 (588)
||||++.||+|++++++++... ....++||+|++++|++||++||+||+.+||+|||+|+++|+||++|+++|+++|.
T Consensus 341 ~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~ 420 (568)
T PLN02251 341 FIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE 420 (568)
T ss_pred hCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHh
Confidence 9999999999999999876443 34578899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHh
Q 007819 382 KRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMM 461 (588)
Q Consensus 382 ~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~ 461 (588)
+++.+|+|+|+ |++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|+..++++|.++++||++||
T Consensus 421 ~rk~~~~~~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~m 499 (568)
T PLN02251 421 KRKQEGSYKGH-FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLM 499 (568)
T ss_pred hhccccccccc-cceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHh
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCCCCccceEEecccc
Q 007819 462 TVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRD 534 (588)
Q Consensus 462 ~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~ 534 (588)
|+|+ ++| +.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.+|+++
T Consensus 500 n~e~-~~~-----~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~tl~~e~~~ 566 (568)
T PLN02251 500 DVER-RHG-----KFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGPGSDATNHTLKLELGA 566 (568)
T ss_pred hhhh-hCC-----CcCccccccccCCCCHHHHHHHHHHHHhhhcCcCcCCCCccccCcccCCCceEEEecccC
Confidence 9999 888 899999999999999999999999999999999999999999999999999999999874
No 3
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.2e-132 Score=1155.66 Aligned_cols=565 Identities=35% Similarity=0.577 Sum_probs=509.7
Q ss_pred CCCCCChhhhhhhccCCCCCcCcCCCceeeecCCCcccCCCCChHHHhhhCCcccCCCceeE-ecCccCCCccccccCCC
Q 007819 7 IPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHF-LRATAKVPDAQIITEHP 85 (588)
Q Consensus 7 ~~~~~s~lq~~R~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (588)
+..++|++|..|..++|+||.++.+...++..+....+.|+....++...|||+.. ..+| .++. ..+......+.
T Consensus 760 ~~~~~s~~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~~~--~~~~~~~~~~~ 835 (1419)
T PTZ00287 760 SLGCMSELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSY--ENKFQIQEI--FHDKYATPISF 835 (1419)
T ss_pred hhccccHHhhhccccCccchhhhhhhHhhcccceeeecCChhhhhhhhhcccchhh--hhhhhHhhh--hccccccCCcC
Confidence 45679999999999999999998765455555544445555668899999999865 3333 1111 01121223346
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccccc-CCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R-~k~~ 164 (588)
.+|||||+|||||||+||||+|++++++..+ ++ ++||. ||.||+++++++||.+.++.|+|+|||+++||+| .++.
T Consensus 836 ~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~gf~-G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~ 912 (1419)
T PTZ00287 836 EIKIGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIAFY-GLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLF 912 (1419)
T ss_pred CcEEEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEEEe-CchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCC
Confidence 6899999999999999999999999997654 43 67766 9999999999999999999999999997779999 6688
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
++|++++++++|++++||+||+||||||+++|+.|+|||.++|++++||||||||||||++..+|+|||||||+++++++
T Consensus 913 t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~sea 992 (1419)
T PTZ00287 913 DKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASL 992 (1419)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996666999999999999999
Q ss_pred HHHHHHHhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEE
Q 007819 245 ISNVCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 297 (588)
Q Consensus 245 I~nl~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlI 297 (588)
|+||++||.|++| |+|+||...+++||.+|++.||+.|++|++.||+||||||
T Consensus 993 I~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVlV 1072 (1419)
T PTZ00287 993 IGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLI 1072 (1419)
T ss_pred HHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999999987 8888888777899999999999999999999999999999
Q ss_pred cCCCcCcchhHHHHHHHHHHHHhc-----------C-c--------c-----------------ccCccccCCchhhhhh
Q 007819 298 PEGLIESIPEVYALLKEIHSLLRQ-----------G-V--------P-----------------VDNISSQLSPWASALF 340 (588)
Q Consensus 298 pEGl~~~ipe~~~li~el~~~l~~-----------~-~--------~-----------------~~e~~~~ls~~~~~l~ 340 (588)
||||+++|||++.||+||++++++ + + . .+.+.++||||++++|
T Consensus 1073 ~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~lf 1152 (1419)
T PTZ00287 1073 PDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALL 1152 (1419)
T ss_pred cCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHHH
Confidence 999999999999999999999864 1 0 0 1335689999999999
Q ss_pred ccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHH
Q 007819 341 EFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYV 420 (588)
Q Consensus 341 ~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~ 420 (588)
++||.+||+||+ +||+ ||+|+++|+||+||++||+++|++|+++|+|+|+ |++++||||||+||+.||+|||+|||+
T Consensus 1153 ~slP~~i~~qLl-~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~-F~~~~HffGYegR~~~PS~FD~~y~Y~ 1229 (1419)
T PTZ00287 1153 KTFPQFIIKELL-HVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGS-FMGLTHFFGYQGRSSLPSEFDCKLAYS 1229 (1419)
T ss_pred HhccHHHHHHHh-ccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccc-cceeeeccccccccCCCCccchHHHHH
Confidence 999999999998 9999 9999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhccccC-CC----CCCCCCcccccceEecCCChHHHHH
Q 007819 421 LGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQ-NP----GASSIGRPAINPATVDMRGKAYELL 495 (588)
Q Consensus 421 LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~~~~-g~----~~~~~~~p~i~~~~Vdl~g~~f~~~ 495 (588)
||+.|+.++.+|+||||++|+|+..|+++|.++++||++||++|+ |+ ++ .++.+++|||+|++|||+|++|+.|
T Consensus 1230 LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ve~-r~~~~k~~~~~~g~~~pvI~k~~Vdl~g~~fk~~ 1308 (1419)
T PTZ00287 1230 YGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILP-RGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSL 1308 (1419)
T ss_pred HHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhchhh-hccccccccccccCccccccccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999 64 33 2334889999999999999999999
Q ss_pred HHHhhhcccCCcccCCcccccccCCCCCccceEEecccchhhhHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHH---
Q 007819 496 RQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASV--- 572 (588)
Q Consensus 496 ~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~y~~~~~~~~~~~~~~~~~~~~g~~~~~l~~a~~~l~~~--- 572 (588)
+++|++|+++|+|++||||||+||.+|++++||.+|+++|++||+++++|+++||++|+|||++++||+|+.+|+++
T Consensus 1309 ~~~r~~W~~~d~y~~PGPiQ~~g~~~~~~~~tL~~e~~~y~~~l~~~~~~~~~~~~~c~fg~~~~~l~~~~~~~~~~~~~ 1388 (1419)
T PTZ00287 1309 KIALQKWQMEDRFCNPGPIQFEGNASNYYNRILFEEQSEYFEMLRYVECYANILKDTCRFGVSADYLKNVFVQLCGMLVL 1388 (1419)
T ss_pred HHHHHhhhhcCcCCCCCCccccCccccCcCeeeeHhHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----HHHHHhhcCC
Q 007819 573 ----TEVLSAMSAS 582 (588)
Q Consensus 573 ----~~~l~~~~~~ 582 (588)
.++++.|..-
T Consensus 1389 ~~~~~~~~~~~~~~ 1402 (1419)
T PTZ00287 1389 AYKPNDILSNMPYI 1402 (1419)
T ss_pred eeccchHhhhcccc
Confidence 6778777654
No 4
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=3.5e-131 Score=1083.14 Aligned_cols=508 Identities=41% Similarity=0.693 Sum_probs=482.0
Q ss_pred CCCChhhhhhhccCCCCCcCcCCC--ceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCC
Q 007819 9 RELSGLQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (588)
Q Consensus 9 ~~~s~lq~~R~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
|+.|+||++|+.|+|+||++|++. .++++.|+.+++. .++++|+++||||||+|+++|.+... . ...+.+
T Consensus 1 ~~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~fp~~~~~p~~~~~~~~~---~---~~~~~~ 72 (550)
T cd00765 1 MVYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAA--GDPDALAKLFPGTYGQPSVAFVPDQD---A---PSSAPK 72 (550)
T ss_pred CCccHHHHHHHhcCCCCChhhcCCccceEEeecCccccc--CCHHHHHHhChhhhCCcceEEeecCC---c---ccCCCC
Confidence 568999999999999999999984 6899999999987 78899999999999999999998542 1 223556
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||||++||||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|.+++++
T Consensus 73 ~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~ 152 (550)
T cd00765 73 LKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETE 152 (550)
T ss_pred CEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCH
Confidence 89999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 246 (588)
+++++++++|++++||+||+|||||||++|+.|+|||+++|++++||||||||||||+++++|+|||||||+++++++|+
T Consensus 153 e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ 232 (550)
T cd00765 153 DQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIG 232 (550)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcC
Q 007819 247 NVCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 299 (588)
Q Consensus 247 nl~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpE 299 (588)
||+.|+.|+++ |+|+|+...++++|.+|++.||+.|++|+.+||+|+||+|||
T Consensus 233 ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsE 312 (550)
T cd00765 233 NVMRDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPE 312 (550)
T ss_pred HHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999875 778887777788999999999999999999999999999999
Q ss_pred CCcCcchhHHHHHHHHHHHHhcCcc--ccCccccCCchhhhhhccCh---------hhHhhhhccCCCCCCCcccchhhH
Q 007819 300 GLIESIPEVYALLKEIHSLLRQGVP--VDNISSQLSPWASALFEFLP---------PFIKKQLLLQPESDDSAQLSQIET 368 (588)
Q Consensus 300 Gl~~~ipe~~~li~el~~~l~~~~~--~~e~~~~ls~~~~~l~~~lp---------~~i~~qll~~rD~~Gn~~ls~i~t 368 (588)
|+++||||++.||+|++++++++.. .+...++|++|++++|+++| ++|++||+.+||+|||+|+++|+|
T Consensus 313 Glie~ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iet 392 (550)
T cd00765 313 GLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIET 392 (550)
T ss_pred CchhhCchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchH
Confidence 9999999999999999999877643 24567899999999987776 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCC
Q 007819 369 EKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 448 (588)
Q Consensus 369 e~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~ 448 (588)
|++|+++|+++|.+++.+|+|+|+ |++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.+++
T Consensus 393 e~lL~~lV~~~L~~~k~~g~y~~~-f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~ 471 (550)
T cd00765 393 EKLLIQMVETRLEKMKQAGAYKGQ-FMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVE 471 (550)
T ss_pred HHHHHHHHHHHHHHhhhccccccc-ccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCce
Confidence 999999999999998888999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCC--CCccc
Q 007819 449 KWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAKAV 526 (588)
Q Consensus 449 ~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~~~ 526 (588)
+|+++++||++|||+|+ +.| +.+|||++++|||+|++|++|+++|++|+++|+|++||||||+||.+ |++++
T Consensus 472 ~w~~~~vPl~~~mn~e~-~~g-----~~~pvi~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~ 545 (550)
T cd00765 472 EWTVGGVPLTMLMNMER-RHG-----KFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEGSDELSH 545 (550)
T ss_pred EEEEecccHHHHhcccc-ccC-----CcceecccceeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeccCccccccCCce
Confidence 99999999999999999 888 89999999999999999999999999999999999999999999976 99999
Q ss_pred eEEec
Q 007819 527 TLCVE 531 (588)
Q Consensus 527 tl~~e 531 (588)
||.||
T Consensus 546 tl~~e 550 (550)
T cd00765 546 TLLLE 550 (550)
T ss_pred eeecC
Confidence 99987
No 5
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.9e-130 Score=1078.45 Aligned_cols=509 Identities=45% Similarity=0.773 Sum_probs=483.8
Q ss_pred CCCChhhhhhhccCCCCCcCcCCC--ceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCC
Q 007819 9 RELSGLQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (588)
Q Consensus 9 ~~~s~lq~~R~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
|++|+||++|+.|+|+||++|++. .++++.++.++++ .++++|+++|||||++|.++|.++.. ....+
T Consensus 1 ~~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~--------~~~~~ 70 (555)
T PRK07085 1 MNKSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESV--ADQDELAELFPNTYGLPYVTFVKGSE--------SSSKP 70 (555)
T ss_pred CCcCHHHHHHHhCCCCCCHHHhCCCCCceEeecCCcccc--CCHHHHHHhChHhhCCccEEEEeCCC--------Ccccc
Confidence 578999999999999999999873 5889999999987 77899999999999999999998652 12347
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||||++||||||||||||+|+++++++.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|.+++++
T Consensus 71 ~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~ 150 (555)
T PRK07085 71 LKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETE 150 (555)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 246 (588)
+++++++++|++++||+||+||||||+++|+.|+|||++++++|+||||||||||||+++.||+|||||||+++++++|+
T Consensus 151 e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~ 230 (555)
T PRK07085 151 EQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIG 230 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcC
Q 007819 247 NVCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 299 (588)
Q Consensus 247 nl~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpE 299 (588)
||++||.|+++ |+|+||+..++++|.+|++.|++.|++|+..|++|+||+|||
T Consensus 231 ~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsE 310 (555)
T PRK07085 231 NISRDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPE 310 (555)
T ss_pred HHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999875 888888877789999999999999999999999999999999
Q ss_pred CCcCcchhHHHHHHHHHHHHhcCc----------cccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHH
Q 007819 300 GLIESIPEVYALLKEIHSLLRQGV----------PVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETE 369 (588)
Q Consensus 300 Gl~~~ipe~~~li~el~~~l~~~~----------~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te 369 (588)
|+++||||++.||+||++++++.. ..+++.++||+|++++|++||.+||+||+.+||+|||+|+++|+||
T Consensus 311 Glie~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te 390 (555)
T PRK07085 311 GLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETE 390 (555)
T ss_pred CchhcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHH
Confidence 999999999999999999987641 1245678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 007819 370 KLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 449 (588)
Q Consensus 370 ~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~ 449 (588)
++|+++|+++|.+++.+|+|+++ |++++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|+..++++
T Consensus 391 ~lL~~lV~~~l~~~k~~g~y~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~ 469 (555)
T PRK07085 391 KLLIEMVKKELEKLKPEGKYKGP-FSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTE 469 (555)
T ss_pred HHHHHHHHHHHHHhhcccccccc-eeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcce
Confidence 99999999999999988999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCC--CCccce
Q 007819 450 WRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAKAVT 527 (588)
Q Consensus 450 w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~~~t 527 (588)
|++.++||++|||+|+ ++| +++|+|++++||++|++|++|+++|++|+++|+|++||||||+||.+ |++++|
T Consensus 470 w~~~~vPl~~~~n~e~-~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~t 543 (555)
T PRK07085 470 WIAGAVPLTMMMNMER-RHG-----KEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELCDQRTLT 543 (555)
T ss_pred eeEecccHHHHhcHHh-hCC-----CCCceeeeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCCce
Confidence 9999999999999999 888 99999999999999999999999999999999999999999999975 999999
Q ss_pred EEecccc
Q 007819 528 LCVEDRD 534 (588)
Q Consensus 528 l~~e~~~ 534 (588)
|.||+++
T Consensus 544 l~~e~~~ 550 (555)
T PRK07085 544 LLLELNK 550 (555)
T ss_pred EEecCCC
Confidence 9999874
No 6
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.5e-129 Score=1125.17 Aligned_cols=563 Identities=30% Similarity=0.511 Sum_probs=524.3
Q ss_pred CCChhhhhhhccCCCCCcCcCCCceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCeEE
Q 007819 10 ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRV 89 (588)
Q Consensus 10 ~~s~lq~~R~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 89 (588)
..|+||++|+.|+|+||++|++. ++++.|+.++++...++++|+++||||||+|+++|.++.. ..........+||
T Consensus 30 ~~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~---~~~~~~~~~~krI 105 (1328)
T PTZ00468 30 GQSNMQMWRRRWEPCLPHILRSP-LSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISD---GSSSWKKFPARRI 105 (1328)
T ss_pred CcCHHHHHHHhcCCCCChHhcCc-eEEeecCCcccccCcchHHHHHhCccccCCcceEEeecCC---CccccccccCCEE
Confidence 56999999999999999999885 9999999999886566799999999999999999998531 0011111244899
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHH
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV 169 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~ 169 (588)
|||+||||||||||||+|++++++..+++++||||++||.||+++++++|+++.++.|+|+|||++|||+|.++.+++++
T Consensus 106 GILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~ 185 (1328)
T PTZ00468 106 GVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQM 185 (1328)
T ss_pred EEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~ 249 (588)
++++++|++++||+||+||||||+++|++|+|||.++|++++||||||||||||+++.+|+|||||||+++++++|+|++
T Consensus 186 ~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~ 265 (1328)
T PTZ00468 186 RASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIM 265 (1328)
T ss_pred HHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999777799999999999999999999
Q ss_pred HHhhhcc-c-----------------------------------------------------------------------
Q 007819 250 TDALSAE-K----------------------------------------------------------------------- 257 (588)
Q Consensus 250 ~dA~S~~-k----------------------------------------------------------------------- 257 (588)
.||.|+. +
T Consensus 266 ~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGli 345 (1328)
T PTZ00468 266 DAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLI 345 (1328)
T ss_pred HHhhhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCcc
Confidence 9999854 4
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 346 efIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~ 425 (1328)
T PTZ00468 346 EFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEE 425 (1328)
T ss_pred ccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 426 ~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~E~r 505 (1328)
T PTZ00468 426 VKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIELR 505 (1328)
T ss_pred hhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 506 ~g~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y~~pGPiQ~~gp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 585 (1328)
T PTZ00468 506 KGKSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNYMISPPRVEDLLRMEDRDENKMTHKLC 585 (1328)
T ss_pred CCCccceeeecccCCCcHHHHHHHHHHHHhhhcCcccCCCCeeeccCcccCcceeccCchHHHHhcCCCCcchhhhcccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 586 ~s~l~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 665 (1328)
T PTZ00468 586 GSELSQNRCKDDLKIPKILLSTASKFNDDLIISSSCRDLDAYIITKCLPHQTGRHNSKTLQLREEEYSSPFTEIRESSSS 665 (1328)
T ss_pred cchhhhhhhcCCCCCchhhhhhhcccchhhcccCchHHHHHHHHHhhCcHhhhcccCcceEEEeccccCchhhccccccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 666 ~~~~~~~~~~~~vgIv~~g~~aPG~NnVI~g~~~~~~~~gvig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~ 745 (1328)
T PTZ00468 666 KSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLPSLKQLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCI 745 (1328)
T ss_pred cccccccccceeEEEEecCCCCccHHHHHHHHHHHHHhCCcEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 746 ~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~ 825 (1328)
T PTZ00468 746 FPNGVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLIC 825 (1328)
T ss_pred eeccccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007819 258 -------------------------------------------------------------------------------- 257 (588)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (588)
T Consensus 826 ~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat 905 (1328)
T PTZ00468 826 MSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT 905 (1328)
T ss_pred hccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh
Confidence
Q ss_pred ----eEEecccccc----------cCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcch---hHHHHHHHHHHHHh
Q 007819 258 ----VILGEEVAAS----------KLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIP---EVYALLKEIHSLLR 320 (588)
Q Consensus 258 ----vlI~Ee~~~~----------~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ip---e~~~li~el~~~l~ 320 (588)
|+|+||...+ +++|.+|++.||+.|++|++.||+|||||||||++++|| |++.||.| +++
T Consensus 906 ganivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e---~~a 982 (1328)
T PTZ00468 906 HPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSR---FST 982 (1328)
T ss_pred CCCEEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHH---Hhh
Confidence 8899987532 589999999999999999999999999999999999999 88999988 333
Q ss_pred cCcc--------ccCccccCCchhhhh---hccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCC
Q 007819 321 QGVP--------VDNISSQLSPWASAL---FEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389 (588)
Q Consensus 321 ~~~~--------~~e~~~~ls~~~~~l---~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y 389 (588)
.+.. .+.+.++||+|++++ |.+||.+|++||+++|| ||+|+++||||+||++||+++|++|+++|+|
T Consensus 983 ~~~~~~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~~el~~rk~~g~y 1060 (1328)
T PTZ00468 983 QNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQKELKFRRSKNKI 1060 (1328)
T ss_pred hccccccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 3321 135678999999999 99999999999999988 9999999999999999999999999999999
Q ss_pred CCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCCCCCCceeEeecchHhHhhhccccC
Q 007819 390 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL-NGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQ 468 (588)
Q Consensus 390 ~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~-tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~~~~ 468 (588)
+|+ |++++||||||+||+.||+|||+|||+||+.|+.++.+|+ ||||++|+|++.|+++|.++++||++||++|+ |+
T Consensus 1061 ~g~-f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~~~-~~ 1138 (1328)
T PTZ00468 1061 KNG-MNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLNI-EG 1138 (1328)
T ss_pred ccc-cceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCccc-cc
Confidence 997 9999999999999999999999999999999999999999 69999999999999999999999999999998 66
Q ss_pred C--------CCCCCCCcccccc----------------eEec-CCChHHHHHHHHhhhcccCCcccCCcccccccCCCCC
Q 007819 469 N--------PGASSIGRPAINP----------------ATVD-MRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADA 523 (588)
Q Consensus 469 g--------~~~~~~~~p~i~~----------------~~Vd-l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~ 523 (588)
| ...+++.||||++ ++|| |+|++|+.|+++|++|+++|+|+|||||||+||.+|+
T Consensus 1139 ~~~~~~~~~~~~~~~~k~vi~~~~~~~~~~~~~~~~~~~~Vd~l~g~~f~~~~~~r~~w~~~d~y~~PGPiQ~~gp~~~~ 1218 (1328)
T PTZ00468 1139 DKIMDSRNNSNLSFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQYFNLFKNL 1218 (1328)
T ss_pred CcccccccccccccccccceeccccccccccccccccccccccccCHHHHHHHHHHHhhhhccccCCCCCccccCccccC
Confidence 5 2234578999999 8999 7999999999999999999999999999999999999
Q ss_pred ccceEEecccchhhhHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007819 524 KAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASG 583 (588)
Q Consensus 524 ~~~tl~~e~~~y~~~~~~~~~~~~~~~~~~~~g~~~~~l~~a~~~l~~~~~~l~~~~~~~ 583 (588)
+++||.+|+++|++||++|++|+++||++|+||||+|+||+|+++|+||+|+|++||+|+
T Consensus 1219 ~~~tL~~e~~~~~~~l~~~~~~~~~~k~~c~~g~~~~~l~~a~~~~~~v~~~~~~~s~~~ 1278 (1328)
T PTZ00468 1219 FNRTLFESEYVYTRNLKEMDQILLEIKTLCQLGVEKDILNSTIQHLKAIQNSISIMSSCN 1278 (1328)
T ss_pred CCeeeeehhhHHHHHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999998
No 7
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=6e-129 Score=1067.23 Aligned_cols=504 Identities=52% Similarity=0.866 Sum_probs=477.7
Q ss_pred hhhhhhccCCCCCcCcCCC--ceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCeEEEE
Q 007819 14 LQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGI 91 (588)
Q Consensus 14 lq~~R~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgI 91 (588)
||+.|+.|+|+||++|++. .++++.++.+++. .++++|+++|||||++|.++|.++.+ . ...+.++||||
T Consensus 1 ~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~---~---~~~~~~~rIgI 72 (539)
T TIGR02477 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAV--ADQEELKELFPNTYGLPIITFEPGEA---S---PDEHQPLKIGV 72 (539)
T ss_pred CchhHhhCCCCCChHHcCCCcceEEeccCcccCC--CCHHHHHHhChHhhCCccEEEecCCC---C---cccccceEEEE
Confidence 6999999999999999984 5888899988876 88999999999999999999998653 1 12355689999
Q ss_pred EecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHHH
Q 007819 92 VFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNA 171 (588)
Q Consensus 92 v~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~ 171 (588)
++||||||||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|.++.+++++++
T Consensus 73 l~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~ 152 (539)
T TIGR02477 73 ILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAK 152 (539)
T ss_pred ECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 007819 172 ALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251 (588)
Q Consensus 172 i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~d 251 (588)
++++|++++||+||+||||||+++|+.|+|||.++|++|+||||||||||||++..+|+|||||||+++++++|+||++|
T Consensus 153 ~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~D 232 (539)
T TIGR02477 153 ALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRD 232 (539)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999866779999999999999999999999
Q ss_pred hhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCc
Q 007819 252 ALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIES 304 (588)
Q Consensus 252 A~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ 304 (588)
+.|+++ |+|+|+...++++|.+|++.|++.|++|+..|++|+||+||||+++|
T Consensus 233 a~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ 312 (539)
T TIGR02477 233 ALSAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEF 312 (539)
T ss_pred HHhcCCcEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhh
Confidence 999875 77888777677899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCccc----cCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHH
Q 007819 305 IPEVYALLKEIHSLLRQGVPV----DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEM 380 (588)
Q Consensus 305 ipe~~~li~el~~~l~~~~~~----~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l 380 (588)
|||++.|++||+++++++... ..+.++||+|++++|++||.+||+||+.+||+|||+++++|+||++|+++|+++|
T Consensus 313 ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l 392 (539)
T TIGR02477 313 IPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTEL 392 (539)
T ss_pred cchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHH
Confidence 999999999999999776443 5667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhH
Q 007819 381 NKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM 460 (588)
Q Consensus 381 ~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~ 460 (588)
.+++++|+|++. |.+++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|++.++++|.+.++||++|
T Consensus 393 ~~~~~~~~~k~~-f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~ 471 (539)
T TIGR02477 393 NKRKKEGEYKGK-FSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMM 471 (539)
T ss_pred HhhhccccceeE-EeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHH
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCC--CCCccceEEecc
Q 007819 461 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPG--ADAKAVTLCVED 532 (588)
Q Consensus 461 ~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~--~~~~~~tl~~e~ 532 (588)
||+|+ ++| +++|+|++++||++|++|++|+++|++|+++|+|++||||||+||. +|++++||.+|+
T Consensus 472 ~n~e~-~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~~~tl~~e~ 539 (539)
T TIGR02477 472 MNMER-RHG-----EMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539 (539)
T ss_pred hChhh-hCC-----CCCccceeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCceEEEecC
Confidence 99999 888 8999999999999999999999999999999999999999999999 499999999985
No 8
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.6e-117 Score=1031.56 Aligned_cols=503 Identities=34% Similarity=0.641 Sum_probs=466.2
Q ss_pred CCChhhhhhhccCCCCCcCcCCCcee---eecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCC
Q 007819 10 ELSGLQQLRSLYQPELPPCLQGTTVR---VEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (588)
Q Consensus 10 ~~s~lq~~R~~~~p~lp~~l~~~~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
+.|+||++|+.|+|+||++|++. ++ +..|+.+.+. .|.+++.++||++++.|.++|.+... ........+
T Consensus 105 ~~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~g~~~~~~--~d~~~~~~f~~~~~~~~~~~~~~~~~----~~~~~~~~~ 177 (1419)
T PTZ00287 105 DLSPLQYERIKYQPTLPKALASE-YQILEENHGDDFINK--KDYEEVKRFLKNLHNLPILNVKETNN----HESFKGGNV 177 (1419)
T ss_pred ccCHHHHHHHhcCCCCchhhccc-cccceeccCcccccc--cCHHHHHHHHHHhhcCceeeecCCCc----cccccccCc
Confidence 57999999999999999999885 66 7788887766 78899999999999999999986431 111122345
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||||++||||||||||||+|+++++.+.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|.++.++
T Consensus 178 ~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~~~ 257 (1419)
T PTZ00287 178 LKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNK 257 (1419)
T ss_pred eEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCCCH
Confidence 89999999999999999999999999888889999999999999999999999999999999999998999999999889
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 246 (588)
+++++++++|++++||+||+||||||+++|+.|+|+|.+.|++++||||||||||||+++.+|+|||||||+++++++|+
T Consensus 258 e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~I~ 337 (1419)
T PTZ00287 258 DDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIG 337 (1419)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997666699999999999999999
Q ss_pred HHHHHhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcC
Q 007819 247 NVCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 299 (588)
Q Consensus 247 nl~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpE 299 (588)
|++.|+.|+++ |+|+|++..++++|.+|++.|++.|.+|++.|++|+||+|||
T Consensus 338 ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIvVsE 417 (1419)
T PTZ00287 338 NLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPE 417 (1419)
T ss_pred HHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999998765 556666555567889999999999999999999999999999
Q ss_pred CCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHH
Q 007819 300 GLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVE 379 (588)
Q Consensus 300 Gl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~ 379 (588)
|+++||||++.||+||+.+++++... .++++ |++++|++||..+++||+.+||+|||+|+++|+||+||+++|+++
T Consensus 418 Glie~Ipe~~~Li~eln~~l~~g~~~---~~~~~-~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~ 493 (1419)
T PTZ00287 418 GLIEFVPEMKILIGELNVILKEGPFD---ASKLK-HSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESE 493 (1419)
T ss_pred CcchhcchHHHHHHHhhhhcccCcch---hhhhh-hhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHH
Confidence 99999999999999999999876432 34455 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHh
Q 007819 380 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITS 459 (588)
Q Consensus 380 l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~ 459 (588)
|+++.++| .+|++++|+|||+|||+.||+||++|||.||+.|++++.+|+||||++|+|+..++++|+++++||++
T Consensus 494 L~~~~~~g----~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~ 569 (1419)
T PTZ00287 494 LAKLNDNN----LNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLR 569 (1419)
T ss_pred HHHHHhcC----CCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHH
Confidence 99998765 23999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccC-CCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCCCCccceEEeccc
Q 007819 460 MMTVKRWSQ-NPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDR 533 (588)
Q Consensus 460 ~~~~e~~~~-g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~ 533 (588)
||++|+ |+ | +.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.+|..
T Consensus 570 ~m~~e~-~~~g-----~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~Y~~pGpiQ~~g~~~d~~~~tl~~e~~ 638 (1419)
T PTZ00287 570 IMHVNR-DNTG-----KEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSNSRCYTVKIPTK 638 (1419)
T ss_pred HhhHHh-hccC-----CCceeEEeeeeCCCCHHHHHHHHHHHHhhhcccccCCCCeeccccccCCCceeeeccch
Confidence 999999 66 8 89999999999999999999999999999999999999999999999999999999964
No 9
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=8.9e-71 Score=580.13 Aligned_cols=315 Identities=27% Similarity=0.443 Sum_probs=275.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC-CC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI-RT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~-~~ 165 (588)
+||||++|||||||+|++|+|+++++... +++||||++||+||+++++++|+++.++.|+++||| +|||+|.++ ++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~~--g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIAE--GLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT-IIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHHC--CCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe-ecccCCCCccCC
Confidence 59999999999999999999999998753 689999999999999999999999999999999999 999999886 67
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
++++++++++|++++||+||+||||||+++|++|+|+|++++.+++||||||||||||+++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td--~s~Gf~TA~~~~~~~i 155 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTD--YTIGFDTALKTIVEAI 155 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcc--cCcCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888 9999999999999999
Q ss_pred HHHHHHhhhccceEEecccccc--cCCh-------------------hhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCc
Q 007819 246 SNVCTDALSAEKVILGEEVAAS--KLTL-------------------FDLTKQICDAVQARAEQDKNHGVILLPEGLIES 304 (588)
Q Consensus 246 ~nl~~dA~S~~kvlI~Ee~~~~--~~tL-------------------~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ 304 (588)
++++.||.|++|++|+|.||+. ++++ .+.++.+++.|.+|.+.|++|++|+|+||+.+.
T Consensus 156 ~~l~~~a~s~~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~ 235 (338)
T cd00363 156 DRIRDTASSHQRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDF 235 (338)
T ss_pred HHHHHhcccCCCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCccc
Confidence 9999999999999999977654 2332 123667777777777777777777777777653
Q ss_pred chhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 007819 305 IPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRL 384 (588)
Q Consensus 305 ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~ 384 (588)
+|. ..++++ ++++|++++
T Consensus 236 ~~~----------------------------------------------------------~~~~~~----l~~~i~~~~ 253 (338)
T cd00363 236 IPK----------------------------------------------------------PITEKL----LAKLVEERL 253 (338)
T ss_pred ccc----------------------------------------------------------CchHHH----HHHHHHHHc
Confidence 221 112333 444444443
Q ss_pred hcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhc
Q 007819 385 KEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVK 464 (588)
Q Consensus 385 ~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e 464 (588)
| +++|.++|||+|||+.||+||+.||+.||..|++++++|.||+|++++|++ +|++..+||.++++.+
T Consensus 254 --~------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~----~~~~~~vpl~~~~~~~ 321 (338)
T cd00363 254 --G------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPLTEAVNMT 321 (338)
T ss_pred --C------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCc----cCEEEEecHHHHHhhh
Confidence 3 899999999999999999999999999999999999999999999999985 8999999999999987
Q ss_pred cccCCCCCCCCCcccccceEecCCChHHHHHH
Q 007819 465 RWSQNPGASSIGRPAINPATVDMRGKAYELLR 496 (588)
Q Consensus 465 ~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~ 496 (588)
+ +-+ ||++|++|+.|.
T Consensus 322 ~-~~~---------------~~~~~~~~~~~~ 337 (338)
T cd00363 322 K-RVG---------------VDLEGRPFKKFA 337 (338)
T ss_pred c-ccc---------------cCCChHHHHHhh
Confidence 6 211 999999999875
No 10
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1.6e-69 Score=585.69 Aligned_cols=372 Identities=19% Similarity=0.286 Sum_probs=307.7
Q ss_pred CCCceeEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCH
Q 007819 62 GQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTK 141 (588)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~ 141 (588)
.....+|++++ ||+++++++...|||||+|||+|||||+||++++.++...+...+||||++||+||+++++++||+
T Consensus 66 ~~~~~~~~~ag---pr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~ 142 (484)
T PLN02564 66 SPRGTHFRRAG---PRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTP 142 (484)
T ss_pred ccCCccceecC---CcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCH
Confidence 33457999999 999999999999999999999999999999999998876666689999999999999999999999
Q ss_pred hhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccC
Q 007819 142 EILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (588)
Q Consensus 142 ~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDN 221 (588)
+.++.|+++||+ +|||+|.+. +.++++++|++++||+||+||||||+++|+.|++++.++|++|+||||||||||
T Consensus 143 ~~V~~i~~~GGT-iLGTsR~~~----~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDN 217 (484)
T PLN02564 143 KVVNDIHKRGGT-ILGTSRGGH----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDN 217 (484)
T ss_pred HHhhcHhhCCCc-eeccCCCcc----hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccC
Confidence 999999999999 999999864 688999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcc-ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCC
Q 007819 222 DLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE-KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 300 (588)
Q Consensus 222 DL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~-kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEG 300 (588)
||+++| +|||||||+++++++|++++.||.|++ +++|+|.|| |+..+.. +..+++.+ ...+|||||-
T Consensus 218 DI~~tD--~T~GFdTAv~~~~~aI~~i~~tA~S~~~rv~iVEvMG-R~aG~LA----l~aaLA~~-----gad~iLIPE~ 285 (484)
T PLN02564 218 DIPVID--KSFGFDTAVEEAQRAINAAHVEAESVENGIGLVKLMG-RYSGFIA----MYATLASR-----DVDCCLIPES 285 (484)
T ss_pred CCcCcc--cCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECC-CCHHHHH----HHHHHhhC-----CCCEEEeCCC
Confidence 999988 999999999999999999999999997 899999665 4444321 22333321 3568999999
Q ss_pred CcCcchhHHHHHHHHHHHHhcC----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHH
Q 007819 301 LIESIPEVYALLKEIHSLLRQG----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLV 376 (588)
Q Consensus 301 l~~~ipe~~~li~el~~~l~~~----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v 376 (588)
.++. .....|++.+.+.++++ ++++||..+. .+++..+. ...+|++||+++.++ +.+|
T Consensus 286 pf~l-e~~~~ll~~i~~rl~~~~~~VIVVAEGagq~---------~~~~~~~~--~~~~Da~Gn~~l~di------g~~L 347 (484)
T PLN02564 286 PFYL-EGKGGLFEFIEKRLKENGHMVIVVAEGAGQD---------LIAESMES--SDLQDASGNKLLLDV------GLWL 347 (484)
T ss_pred CCCc-chHHHHHHHHHHHHhccCCEEEEEeCCCccc---------hhhhhhcc--cccccccCCcccCcH------HHHH
Confidence 8873 21237888887766654 4568887431 11111110 135899999999997 4445
Q ss_pred HHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecc
Q 007819 377 EVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAP 456 (588)
Q Consensus 377 ~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iP 456 (588)
+++|++++.+- ++..+++|...+||+|||+.|+++|+.||+.||+.|++++++|+||+|++++|.+ +..+|
T Consensus 348 a~~I~~~~~~~--~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~mVg~~~~~-------~~~vP 418 (484)
T PLN02564 348 SQKIKDHFTKV--KKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGR-------HAYIP 418 (484)
T ss_pred HHHHHHHhhhc--ccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEE
Confidence 55555443110 1112899999999999999999999999999999999999999999999999986 88999
Q ss_pred hHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHH
Q 007819 457 ITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQN 498 (588)
Q Consensus 457 l~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~ 498 (588)
|.++... + +.||++|..|+.+...
T Consensus 419 i~~~~~~-~-----------------~~v~~~~~~w~~~l~~ 442 (484)
T PLN02564 419 FYRITEK-Q-----------------NKVVITDRMWARLLSS 442 (484)
T ss_pred HHHHhcc-C-----------------CccCCChHHHHHHHHH
Confidence 9988752 1 3579999999865543
No 11
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.6e-68 Score=574.01 Aligned_cols=342 Identities=18% Similarity=0.269 Sum_probs=288.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhc---hhhcCCccccccccCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST---YKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~---~~n~GGs~~lgS~R~k 162 (588)
++||||+||||||||||++|+|+++++....+.++||||++||+||+++++++|+...++. +.++||| +|||+|.+
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt-~LgssR~~ 81 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSG-ALGSCRYK 81 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCe-EeccCCCC
Confidence 4899999999999999999999999987665559999999999999999999999866655 8999999 99999998
Q ss_pred C----CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 163 I----RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 163 ~----~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
+ .+++++++++++|++++||+||+||||||+++|++|+|+++++|++++||||||||||||++|| +|||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD--~t~GF~TA~ 159 (416)
T PRK14072 82 LKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTD--HCPGFGSAA 159 (416)
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCC--CCCChHHHH
Confidence 6 3688999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhcc---ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHH
Q 007819 239 KVNSQLISNVCTDALSAE---KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 315 (588)
Q Consensus 239 k~~ae~I~nl~~dA~S~~---kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el 315 (588)
++++++|++++.|+.|+. |++|+|.|| |+..+. .+..++++|.. +....+|||||-.++ ++.+++++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMG-R~aG~L----Al~a~lA~~~~-~~gad~iliPE~~~~----~~~~~~~i 229 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMG-RHAGWL----AAAAALAKQNP-DDAPHLIYLPERPFD----EEKFLADV 229 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeC-cchhHH----HHHHhhccccC-CCCccEEEccCCCCC----HHHHHHHH
Confidence 999999999977765543 699999765 555543 13345554432 234678999999886 57788888
Q ss_pred HHHHhcC----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 007819 316 HSLLRQG----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 391 (588)
Q Consensus 316 ~~~l~~~----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g 391 (588)
++.+++. ++++||....+ ...+.+. ...+|+|||++++++ +++|+++|++++ |
T Consensus 230 ~~~~~~~~~~ivvVaEG~~~~~--g~~i~e~---------~~~~D~~gh~~l~g~------~~~La~~i~~~~--g---- 286 (416)
T PRK14072 230 RAIVKRYGYCVVVVSEGIRDAD--GKFIAEA---------GLAEDAFGHAQLGGV------APVLANLIKEKL--G---- 286 (416)
T ss_pred HHHHHhCCCeEEEEecCccccc--ccchhcc---------ccccCCCCCcccccH------HHHHHHHHHHHh--C----
Confidence 7766543 34678764321 1111111 124699999999986 566666776665 3
Q ss_pred cceeeEEecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhcc
Q 007819 392 KKFNAICHFFGYQARGSL--PSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 465 (588)
Q Consensus 392 ~~~~~~~~~lGy~~R~~~--Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~ 465 (588)
+++|++++||+||||. ||+||+.||+.||..|++++.+|.+|+|++++|+..++|+|++..+||.++++.++
T Consensus 287 --~~~R~~~LG~~QRgg~~~ps~~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k 360 (416)
T PRK14072 287 --KKVHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEK 360 (416)
T ss_pred --CeEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcC
Confidence 8899999999999998 99999999999999999999999999999999999999999999999999998543
No 12
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1e-67 Score=569.73 Aligned_cols=366 Identities=21% Similarity=0.325 Sum_probs=309.5
Q ss_pred CCCceeEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhc---CCeEe
Q 007819 62 GQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA---QKTLE 138 (588)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~---~~~~e 138 (588)
+.+...|++++ ||.++++++..+||||+||||+|||||+||++++..+..++..++||||++||+||++ +++++
T Consensus 59 ~~~~~~~~~ag---pr~~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~ 135 (443)
T PRK06830 59 GTEPPSFEKAG---PREKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVE 135 (443)
T ss_pred ccccchhhhcC---CcceeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEE
Confidence 33457899998 9999999999999999999999999999999999998766667899999999999998 89999
Q ss_pred cCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 139 VTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 139 Lt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
||++.++.|+++||| +|||+|.+ +++++++++|++++||+||+||||||+++|..|+|+++++|++|+|||||||
T Consensus 136 Lt~~~v~~i~~~GGT-iLGTsR~~----~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKT 210 (443)
T PRK06830 136 LTPEVVADIHEFGGT-ILGSSRGP----QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKT 210 (443)
T ss_pred CCHHHHhhHHhCCCc-cccCCCCc----hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 999999999999999 99999965 3689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhc-cceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEE
Q 007819 219 LNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSA-EKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 297 (588)
Q Consensus 219 IDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~-~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlI 297 (588)
|||||+++| +|||||||+++++++|++++.||.|+ ++++|+|.|| |+..+.. +..+++. ....+|||
T Consensus 211 IDNDi~~td--~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvMG-R~sG~lA----~~aaLA~-----~~ad~ilI 278 (443)
T PRK06830 211 IDNDINFIQ--KSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMG-RHSGFIA----AYAALAS-----KDVNFVLI 278 (443)
T ss_pred cCCCCcCcc--cCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEECC-CcccHHH----HHHHHhc-----CCCCEEEe
Confidence 999999988 99999999999999999999999999 5799999765 4554421 1233332 24569999
Q ss_pred cCCCcCcchhHHHHHHHHHHHHhcC----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHH
Q 007819 298 PEGLIESIPEVYALLKEIHSLLRQG----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLA 373 (588)
Q Consensus 298 pEGl~~~ipe~~~li~el~~~l~~~----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~ 373 (588)
||-.++. .....|++.+++.+++. ++++||..+. +++. ...+|++||+++.++ +
T Consensus 279 PE~~f~l-~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~------l~~~---------~~~~Da~gn~~l~~i------g 336 (443)
T PRK06830 279 PEVPFDL-EGPNGLLAALEKRLAERGHAVIVVAEGAGQE------LFDD---------TGETDASGNPKLGDI------G 336 (443)
T ss_pred cCCCCCc-hhHHHHHHHHHHHHHhCCceEEEEecCcccc------cccc---------cccccccCCcccccH------H
Confidence 9999873 11237888887766643 4568887431 1111 136899999999987 6
Q ss_pred HHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEe
Q 007819 374 HLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 453 (588)
Q Consensus 374 ~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~ 453 (588)
.+|++++++++++ .+..++++...+||+|||+.||++|+.||+.||+.|++++++|+||+|++++|.+ +.
T Consensus 337 ~~L~~~i~~~~~~---~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~-------~~ 406 (443)
T PRK06830 337 LFLKDRIKEYFKA---RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNR-------FV 406 (443)
T ss_pred HHHHHHHHHHhcc---cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCE-------EE
Confidence 7777777776532 1222789999999999999999999999999999999999999999999999984 88
Q ss_pred ecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHH
Q 007819 454 AAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQ 497 (588)
Q Consensus 454 ~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~ 497 (588)
.+||..+++.. ..||.+|..|+...+
T Consensus 407 ~vPl~~v~~~~------------------k~vd~~~~~w~~~l~ 432 (443)
T PRK06830 407 HLPIDLAVSKR------------------KKVNPEGDLWRSVLE 432 (443)
T ss_pred EEeHHHHhccC------------------CCCCCccHHHHHHHH
Confidence 99999988532 358888999886544
No 13
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=3.6e-67 Score=568.34 Aligned_cols=363 Identities=21% Similarity=0.276 Sum_probs=304.2
Q ss_pred ceeEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhH
Q 007819 65 LAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEIL 144 (588)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v 144 (588)
...|++++ ||.++++.+...|||||+|||+|||||+||++++.++...+.+.+||||++||+||+++++++||++.+
T Consensus 69 ~~~~~~ag---pr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V 145 (459)
T PTZ00286 69 TKRWLRAG---PRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDV 145 (459)
T ss_pred cchheecC---CceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHh
Confidence 36899998 999999999999999999999999999999999999986666789999999999999999999999999
Q ss_pred hchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 145 STYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 145 ~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.|+++||+ +|||+|.++ ++++++++|++++||+||+||||||+++|..|+|++.++|++|+||||||||||||+
T Consensus 146 ~~i~~~GGT-iLGTSR~~~----~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~ 220 (459)
T PTZ00286 146 KTIHRLGGT-ILGSSRGGF----DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIP 220 (459)
T ss_pred hhHHhCCCc-eeccCCChh----hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCC
Confidence 999999999 999999873 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHhhhcc-ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAE-KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 225 ~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~-kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
++| +|||||||+++++++|++++.||.|++ +++|+|.|| |+..+.. +..+++. ....+|||||-.++
T Consensus 221 ~td--~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMG-R~sG~LA----l~aaLA~-----~~ad~vlIPE~~f~ 288 (459)
T PTZ00286 221 IID--ESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMG-RDSGFIA----LHASVAS-----ADVNVCLIPEFDIP 288 (459)
T ss_pred Ccc--cCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecC-cchhHHH----HHHhhhh-----cCCCEEEeCCCCCC
Confidence 988 999999999999999999999999998 699999765 4454321 1223331 24578999998877
Q ss_pred cchhHHHHHHHHHHHHhcC----ccccCcccc-CCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHH
Q 007819 304 SIPEVYALLKEIHSLLRQG----VPVDNISSQ-LSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 378 (588)
Q Consensus 304 ~ipe~~~li~el~~~l~~~----~~~~e~~~~-ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~ 378 (588)
++.+++.+++.+++. ++++||..+ +.+ .. +-..+|++||+++.++ +.+|++
T Consensus 289 ----l~~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~----------~~----~~~~~D~~Gn~~l~di------g~~L~~ 344 (459)
T PTZ00286 289 ----LEGVLEYIEQRLQKKGHCVIVVAEGAGQSLKD----------AD----LDLGTDASGNKKLWDI------GVYLKD 344 (459)
T ss_pred ----HHHHHHHHHHHHhcCCcEEEEEecCCcccccc----------cc----ccccccccCCcccccH------HHHHHH
Confidence 578888887776653 346788653 111 11 0135899999999987 444555
Q ss_pred HHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchH
Q 007819 379 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 458 (588)
Q Consensus 379 ~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~ 458 (588)
+|++++++- ... +++|...+||+|||+.||+||+.||+.||+.|++++++|.||+|++++|.+ +..+||.
T Consensus 345 ~I~~~~~~~--~~~-~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~-------~~~vPl~ 414 (459)
T PTZ00286 345 EITKYLKKK--KPE-HTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNN-------YVMIPIK 414 (459)
T ss_pred HHHHHHhhc--cCc-eEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCE-------EEEEeHH
Confidence 554444321 112 899999999999999999999999999999999999999999999999974 8889999
Q ss_pred hHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHH
Q 007819 459 SMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQN 498 (588)
Q Consensus 459 ~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~ 498 (588)
.+.. -.++.||++|..|+.+...
T Consensus 415 ~v~~-----------------~~~~~v~~~~~~w~~~~~~ 437 (459)
T PTZ00286 415 EMSG-----------------NYRRRVNPEGRLWQRMLAI 437 (459)
T ss_pred HHhC-----------------CCccccCcchHHHHHHHHh
Confidence 8711 1235688888888765543
No 14
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.4e-66 Score=557.58 Aligned_cols=359 Identities=20% Similarity=0.285 Sum_probs=298.3
Q ss_pred eEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCC-EEEEEcCchhhhhcCC--eEecCHhh
Q 007819 67 HFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLLGFLGGSEGLFAQK--TLEVTKEI 143 (588)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~-~v~Gf~~G~~GL~~~~--~~eLt~~~ 143 (588)
-|.+++ ||+++++++..+|||||+|||+|||||++|+++++.+.. + +. +||||++||+||++++ .++|+++.
T Consensus 37 ~~~~ag---pr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~-g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~ 111 (411)
T PLN02884 37 WVHRAG---PRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-Y-GVKNIVGIPFGYRGFFEKGLSEMPLSRKV 111 (411)
T ss_pred hhhhcC---CceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-c-CCcEEEEEccCHHHHhCCCceeeecCHHH
Confidence 456777 999999999999999999999999999999999998753 3 55 8999999999999999 67788999
Q ss_pred HhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCC
Q 007819 144 LSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 144 v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 223 (588)
++.+.++||+ +|||+|.++ .+++++++|++++||+||+||||||+++|.+|++++.++|++++||||||||||||
T Consensus 112 v~~i~~~GGt-~LGtsR~~~----~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi 186 (411)
T PLN02884 112 VQNIHLSGGS-LLGVSRGGA----KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDI 186 (411)
T ss_pred HHHHHhCCCc-eeccCCCCc----cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCC
Confidence 9999999999 999999886 48899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHhhh-ccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCc
Q 007819 224 KNQFVETNVGFDTICKVNSQLISNVCTDALS-AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI 302 (588)
Q Consensus 224 ~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S-~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~ 302 (588)
+++| +|||||||+++++++|++++.||.| ++|++|+|.|| |+..+.. +..+++ .| +..+|||||-.+
T Consensus 187 ~~tD--~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMG-R~aG~LA----l~aalA----~g-~ad~ilIPE~~f 254 (411)
T PLN02884 187 LLMD--KTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMG-RSSGFIA----MHASLA----SG-QVDICLIPEVPF 254 (411)
T ss_pred cCcc--cCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCC-CCHHHHH----HHHHHh----cC-CCCEEEeCCCCC
Confidence 9998 9999999999999999999999988 67899999775 4444321 122333 12 256899999887
Q ss_pred CcchhHHHHHHHHHHHHhcC----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHH
Q 007819 303 ESIPEVYALLKEIHSLLRQG----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 378 (588)
Q Consensus 303 ~~ipe~~~li~el~~~l~~~----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~ 378 (588)
+. ...+.+++.+++.++.. ++++||..+. +.+. ...+|++||++++++ +.+|++
T Consensus 255 ~~-~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~----------~~~~-----~~~~Da~G~~~l~~~------~~~La~ 312 (411)
T PLN02884 255 TL-DGPNGVLRHLEHLIETKGSAVVCVAEGAGQD----------LLQK-----TNATDASGNPVLGDI------GVHLQQ 312 (411)
T ss_pred Cc-ccHHHHHHHHHHHHhcCCcEEEEEecccccc----------cccc-----cccccccCCcccCcH------HHHHHH
Confidence 72 11256778887776643 3467876321 1110 025799999999987 555666
Q ss_pred HHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchH
Q 007819 379 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 458 (588)
Q Consensus 379 ~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~ 458 (588)
+|++++++ .|.++++|...+||+|||+.|+++|+.||+.||..|++++.+|.||+|++++|. ++..+||.
T Consensus 313 ~i~~~~~~---~g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~-------~~~~vpl~ 382 (411)
T PLN02884 313 EIKKHFKD---IGVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNT-------HYVYLPIP 382 (411)
T ss_pred HHHHHhhc---cCCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEEeHH
Confidence 66665432 122279999999999999999999999999999999999999999999999996 48899999
Q ss_pred hHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHH
Q 007819 459 SMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQ 497 (588)
Q Consensus 459 ~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~ 497 (588)
++++.+ +.||.+|..|+.+..
T Consensus 383 ~v~~~~------------------k~vd~~~~~~~~~~~ 403 (411)
T PLN02884 383 EVIAYP------------------RRVDPNSRMWHRCLT 403 (411)
T ss_pred HHhcCC------------------CCCCCCcHHHHHHHH
Confidence 988532 368889999986543
No 15
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-66 Score=543.40 Aligned_cols=321 Identities=28% Similarity=0.419 Sum_probs=270.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccccc-CCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R-~k~~ 164 (588)
++||||+|||||||||||||+++++++... +++||||++||.||+++++++|+++.++.|+|+||| +|||+| .+++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT-~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT-FLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCe-EEeeCCCCCcc
Confidence 589999999999999999999999999754 999999999999999999999999999999999999 777776 5688
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
++|..+++++++++++||+||+||||||+++|+.|+|++ +++|||||||||||++.+| +|||||||+++++++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td--~tiGfdTA~~~~~ea 151 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTD--FTIGFDTALETAVEA 151 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccc--cCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 3899999999999999888 999999999999999
Q ss_pred HHHHHHHhhhccceEEecccccc--cCCh-----------------hh-HHHHHHHHHHH-HHHCCCCeEEEEEcCCCcC
Q 007819 245 ISNVCTDALSAEKVILGEEVAAS--KLTL-----------------FD-LTKQICDAVQA-RAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~Ee~~~~--~~tL-----------------~~-iv~~i~~~I~~-R~~~gk~~gvIlIpEGl~~ 303 (588)
|++|+.+++||+|++|+|.||+. +++| .+ .+++++..+.. |...||+|++|++|||+.+
T Consensus 152 id~l~dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 152 IDNLRDTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPADLIIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHHHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCccccchHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 99999999999999999976543 2332 11 12445555544 5558888999999999887
Q ss_pred cchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 007819 304 SIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKR 383 (588)
Q Consensus 304 ~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~ 383 (588)
++++ +|+.... .++++
T Consensus 232 ~~~~--------------------------------------------------~~~~~~~--------------~i~~~ 247 (347)
T COG0205 232 QIGE--------------------------------------------------NGAELLA--------------AIEEL 247 (347)
T ss_pred cccc--------------------------------------------------chhhHHH--------------HHHHH
Confidence 6543 1121111 12222
Q ss_pred HhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhh
Q 007819 384 LKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTV 463 (588)
Q Consensus 384 ~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~ 463 (588)
+..+ . +++|.++|||+|||+.||+||+.||+.||..|++++.+|++|+|++++|++.....|.....|...+++.
T Consensus 248 ~~~~----~-~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~~~~~~~~~~~ 322 (347)
T COG0205 248 LALG----D-FETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMVMSL 322 (347)
T ss_pred hhhc----c-cceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEeehhHhhhhhhhhhhcc
Confidence 2211 1 7899999999999999999999999999999999999999999999999998777888888888887776
Q ss_pred ccccCCCCCCCCCcccccceEecCCChHHHHH
Q 007819 464 KRWSQNPGASSIGRPAINPATVDMRGKAYELL 495 (588)
Q Consensus 464 e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~ 495 (588)
++ .++.++.++||+.+..+..+
T Consensus 323 ~~----------~~~~~~~~~~~~~~~l~~~~ 344 (347)
T COG0205 323 EE----------PDRSIKLDLVDLAKRLGIYF 344 (347)
T ss_pred cc----------cCcchhhHHHhhhhhhhhhh
Confidence 54 13458888999888877654
No 16
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=3.7e-65 Score=533.93 Aligned_cols=301 Identities=25% Similarity=0.373 Sum_probs=262.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEec-CHhhHhchhhcCCccccccccCCCC--
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEV-TKEILSTYKNQGGYDMLGRTKDQIR-- 164 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eL-t~~~v~~~~n~GGs~~lgS~R~k~~-- 164 (588)
|||||+|||||||||++|+|+++++.. +.+++||||++||+||+++++++| +++.++.|+++||+ +|||+|.++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~-~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt-~LgtsR~~~~~~ 78 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIA-EYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT-ILGSSRTNPFKY 78 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHH-cCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc-cccCCCCCcccc
Confidence 699999999999999999999998754 447899999999999999999999 99999999999999 9999998764
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
+++++++++++|++++||+||+||||||+++|+.|+| .+ ++||||||||||||+++| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd--~tiGfdTA~~~~~~~ 150 (324)
T TIGR02483 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATD--YTFGFDTAVEIATEA 150 (324)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCc--cCcCHHHHHHHHHHH
Confidence 3588999999999999999999999999999999987 24 999999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccceEEecccccc--cCCh-----------------hhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcc
Q 007819 245 ISNVCTDALSAEKVILGEEVAAS--KLTL-----------------FDLTKQICDAVQARAEQDKNHGVILLPEGLIESI 305 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~Ee~~~~--~~tL-----------------~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~i 305 (588)
|++++.||.|++|++|+|.||++ +++| .+ ++.+++.|++|++.|++|++|+|+||+.+..
T Consensus 151 i~~i~~ta~S~~r~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~~-~~~l~~~v~~~~~~g~~~~vvvvsEG~~~~~ 229 (324)
T TIGR02483 151 LDRLHTTAESHHRVMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFD-IDSVCEKVRERFARGKRFAIVVVAEGAKPKG 229 (324)
T ss_pred HHHHHHHHhhcCCEEEEEEcCCChhHHHHHHHhccCCCEEEecCCCCC-HHHHHHHHHHHHHhCCCceEEEEecCccccc
Confidence 99999999999999999977643 2322 11 5677788888888888888888888875422
Q ss_pred hhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHh
Q 007819 306 PEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLK 385 (588)
Q Consensus 306 pe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~ 385 (588)
.. .+++. ..+|+|||++++++ +++++++|++++
T Consensus 230 ~~------------------------------~~~~~----------~~~d~~gh~~~~~~------~~~l~~~i~~~~- 262 (324)
T TIGR02483 230 GE------------------------------MVVQE----------GVKDAFGHVRLGGI------GNWLAEEIERRT- 262 (324)
T ss_pred cc------------------------------hhccc----------cccccccCcccCcH------HHHHHHHHHHhc-
Confidence 11 00000 24799999999986 777888887765
Q ss_pred cCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhH
Q 007819 386 EGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM 460 (588)
Q Consensus 386 ~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~ 460 (588)
| +++|...+||.|||+.||+||+.+|+.||..|++++++|.+|+|++++|.+ +..+||.++
T Consensus 263 -g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~~~ 323 (324)
T TIGR02483 263 -G------IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTD-------IVYVPIAEA 323 (324)
T ss_pred -C------CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEeeHHHh
Confidence 3 889999999999999999999999999999999999999999999999986 888999865
No 17
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.6e-64 Score=533.22 Aligned_cols=337 Identities=21% Similarity=0.301 Sum_probs=272.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC--CeEecCHhhHhchhhcCCccccccccC-
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKD- 161 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GGs~~lgS~R~- 161 (588)
+.+||||++|||||||||++|+|+++++.. +++.+||||++||.||+++ ++++|+++.++.|.++||+ +|||+|.
T Consensus 3 ~~~~I~IltsGG~apGmNa~i~~vv~~a~~-~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 80 (360)
T PRK14071 3 EKKRIGILTSGGDCAGLNAVIRAVVHRARG-TYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT-ILGTTNKG 80 (360)
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 368999999999999999999999998863 3478999999999999999 8999999999999999999 9999962
Q ss_pred -CCC-------ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCC
Q 007819 162 -QIR-------TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVG 233 (588)
Q Consensus 162 -k~~-------~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~G 233 (588)
.++ .++.+++++++|++++||+||+||||||++.|..|++. .+++||||||||||||+++| +|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td--~t~G 153 (360)
T PRK14071 81 DPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATE--VSIG 153 (360)
T ss_pred CccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcc--cCcC
Confidence 221 14678999999999999999999999999999999873 25899999999999999998 9999
Q ss_pred chhHHHHHHHHHHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHH
Q 007819 234 FDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLK 313 (588)
Q Consensus 234 FdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~ 313 (588)
||||+++++++|++++.+|.|++|++|+|.||+ +..+.. +...++ ....+|||||-.++ ++.+++
T Consensus 154 f~TA~~~~~~~id~i~~ta~s~~rv~ivEvMGR-~~G~LA----l~~~la------~ga~~iliPE~~~~----~~~l~~ 218 (360)
T PRK14071 154 FDTAVNIATEALDRLHFTAASHNRVMILEVMGR-DAGHIA----LAAGIA------GGADVILIPEIPYT----LENVCK 218 (360)
T ss_pred hhHHHHHHHHHHHHHHhhhcccCCEEEEEECCC-CccHHH----HHhHhh------cCCCEEEECCCCCC----HHHHHH
Confidence 999999999999999999999999999997754 444321 111121 12345555555444 345555
Q ss_pred HHHHHHhcC-----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCC
Q 007819 314 EIHSLLRQG-----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGT 388 (588)
Q Consensus 314 el~~~l~~~-----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~ 388 (588)
.+.+.++++ ++++||....+.. -+.++|++||++++++ +++++++|++++ |
T Consensus 219 ~i~~~~~~~~~~~iivvsEG~~~~~g~---------------~~~~~d~~g~~~~~~~------~~~l~~~i~~~~--g- 274 (360)
T PRK14071 219 KIRERQEEGKNFCLVVVSEAVRTEEGE---------------QVTKTQALGEDRYGGI------GQYLAEQIAERT--G- 274 (360)
T ss_pred HHHHHHHcCCCeEEEEEcCCCcccccc---------------cccccccccccccCcH------HHHHHHHHHHhc--C-
Confidence 555544431 2344544321110 0124799999999986 777888887765 3
Q ss_pred CCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhccccC
Q 007819 389 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQ 468 (588)
Q Consensus 389 y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~~~~ 468 (588)
+++|...+||.|||+.||+||+.+|+.||..|++++++|.||.|+++++.+ +..+||.++.+.+
T Consensus 275 -----~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~t~~mv~~~~~~-------~~~vpl~~v~~~~---- 338 (360)
T PRK14071 275 -----AETRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDLIAQGKFDRMVAWQNRQ-------VVSVPIAEAIATY---- 338 (360)
T ss_pred -----CCeeEEecChhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEeHHHHhcCC----
Confidence 889999999999999999999999999999999999999999999999974 8899999998632
Q ss_pred CCCCCCCCcccccceEecCCChHHHHHHHHh
Q 007819 469 NPGASSIGRPAINPATVDMRGKAYELLRQNA 499 (588)
Q Consensus 469 g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r 499 (588)
+.||.+|..|+.++..-
T Consensus 339 --------------~~v~~~~~~~~~~~~~~ 355 (360)
T PRK14071 339 --------------RAVDPEGTLVKTARGLG 355 (360)
T ss_pred --------------CCCCccHHHHHHHHHHh
Confidence 36788888888866543
No 18
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=1.4e-63 Score=530.37 Aligned_cols=350 Identities=18% Similarity=0.216 Sum_probs=283.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHh---hHhchhhcCCccccccccCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKE---ILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~---~v~~~~n~GGs~~lgS~R~k 162 (588)
.+||||+||||||||||++|+++++++...+++++||||++||+||+++++++|++. .++.++++||| +|||+|.+
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt-~LGtsR~~ 81 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGS-PIGNSRVK 81 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCc-eeccCCCC
Confidence 479999999999999999999999988766678999999999999999999999985 34559999999 99999987
Q ss_pred CC-------------ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCC
Q 007819 163 IR-------------TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVE 229 (588)
Q Consensus 163 ~~-------------~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie 229 (588)
+. .++.+++++++|++++||+||+||||||+++|++|++++.++|++++||||||||||||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td-- 159 (403)
T PRK06555 82 LTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIR-- 159 (403)
T ss_pred ccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCcc--
Confidence 62 156789999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhhccceEEe-cccccccCChhhHHHHHHHHHHHHH-----H---------CCCCeEE
Q 007819 230 TNVGFDTICKVNSQLISNVCTDALSAEKVILG-EEVAASKLTLFDLTKQICDAVQARA-----E---------QDKNHGV 294 (588)
Q Consensus 230 ~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~-Ee~~~~~~tL~~iv~~i~~~I~~R~-----~---------~gk~~gv 294 (588)
+|||||||+++++++|++|+.||.|++|++++ |.|| |+..+.. +...++.|. + ......+
T Consensus 160 ~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMG-R~aG~LA----l~aalA~~~~~~~~~~~~~~~~~~~~~gad~ 234 (403)
T PRK06555 160 QSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMG-RNCGWLT----AATARAYREWLDRQEYVPGFGLSAERWDIHA 234 (403)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccC-CchHHHH----HHHHHhhccccccccccccccccccCCCCcE
Confidence 99999999999999999999999999986655 8665 5555431 234444332 0 1134578
Q ss_pred EEEcCCCcCcchhHHHHHHHHHHHHhcC----ccccCccccC-Cchhh-hhhccChhhHhhhhccCCCCCCCcccchhhH
Q 007819 295 ILLPEGLIESIPEVYALLKEIHSLLRQG----VPVDNISSQL-SPWAS-ALFEFLPPFIKKQLLLQPESDDSAQLSQIET 368 (588)
Q Consensus 295 IlIpEGl~~~ipe~~~li~el~~~l~~~----~~~~e~~~~l-s~~~~-~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~t 368 (588)
|||||-.++ ++.+++.+++.+++. ++++||.... .+.+. +..+. ..+|++||+++.+++.
T Consensus 235 ilIPE~~~~----~e~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~----------~~~Da~G~~~l~~~~~ 300 (403)
T PRK06555 235 VYLPEMAFD----LEAEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEE----------VKRDAFGHVKLDTINP 300 (403)
T ss_pred EEccCCCCC----HHHHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCc----------cccccccceecCCCcH
Confidence 999999887 566777777665543 3568886431 11110 11111 3589999999998764
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcce-eeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEE---ecCC
Q 007819 369 EKLLAHLVEVEMNKRLKEGTYKGKKF-NAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATV---TNLK 444 (588)
Q Consensus 369 e~ll~~~v~~~l~~~~~~g~y~g~~~-~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i---~n~~ 444 (588)
+++++++|++++ | + ++|...+||+|||+.||+||+.||+.||..|++++++|.+| |+++ +|++
T Consensus 301 ----g~~la~~i~~~~--g------~e~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~ 367 (403)
T PRK06555 301 ----GAWFAKQFAELL--G------AEKVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGK 367 (403)
T ss_pred ----HHHHHHHHHHHh--C------CCceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCE
Confidence 555666666665 2 5 48999999999999999999999999999999999999999 5676 7775
Q ss_pred CCCCceeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHH
Q 007819 445 NPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLR 496 (588)
Q Consensus 445 ~~~~~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~ 496 (588)
+..+||.+++. + ..||.+++.|..+.
T Consensus 368 -------~~~vp~~~~~~--~-----------------k~~~~~~~~~~~~~ 393 (403)
T PRK06555 368 -------LRAIEFPRIKG--G-----------------KAFDTSTPWFTELL 393 (403)
T ss_pred -------EEEEEHHHHhc--C-----------------CCCCCCHHHHHHHH
Confidence 88999998764 1 14777888887554
No 19
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.2e-63 Score=521.53 Aligned_cols=282 Identities=26% Similarity=0.422 Sum_probs=246.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-CCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~~~ 165 (588)
+||||++|||||||||++|+|+++++... +++||||++||+||+++++++|+++.++.|.++||+ +|||+|.+ +++
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~~--g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAISE--GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHHC--CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcCC
Confidence 69999999999999999999999988644 789999999999999999999999999999999999 99999975 567
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
++++++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd--~s~Gf~TA~~~~~~~i 150 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTD--YTIGFDTALNTAVEAI 150 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCc--cCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999984 5999999999999999998 9999999999999999
Q ss_pred HHHHHHhhhccceEEecccccc--cCChh----------------hHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchh
Q 007819 246 SNVCTDALSAEKVILGEEVAAS--KLTLF----------------DLTKQICDAVQARAEQDKNHGVILLPEGLIESIPE 307 (588)
Q Consensus 246 ~nl~~dA~S~~kvlI~Ee~~~~--~~tL~----------------~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe 307 (588)
++++.||.|++|++|+|.||+. +++|. -.++.+++.|++|++.|++|++|+++||+.+
T Consensus 151 ~~l~~~a~s~~rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~~~~~l~~~i~~r~~~g~~~~vivvsEg~~~---- 226 (320)
T PRK03202 151 DRLRDTASSHERVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPFDIEELCAKIKKGRERGKKHAIIVVAEGVMP---- 226 (320)
T ss_pred HHHHHHHhccCCEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCC----
Confidence 9999999999999999977643 23221 0145666666666666667777777777643
Q ss_pred HHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcC
Q 007819 308 VYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEG 387 (588)
Q Consensus 308 ~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g 387 (588)
+..|+++|+++. +
T Consensus 227 -----------------------------------------------------------------~~~l~~~i~~~~--~ 239 (320)
T PRK03202 227 -----------------------------------------------------------------AEELAKEIEERT--G 239 (320)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHh--C
Confidence 011445555554 2
Q ss_pred CCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHh-hh
Q 007819 388 TYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMM-TV 463 (588)
Q Consensus 388 ~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~-~~ 463 (588)
+++|...+||.|||+.||+||+.+|+.||..|++++.+|.+|+|+++++.+ +..+||.+++ +.
T Consensus 240 ------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~~-------~~~vpl~~v~~~~ 303 (320)
T PRK03202 240 ------LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNNK-------IVHVPIEEAVENM 303 (320)
T ss_pred ------CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEeHHHHHhcC
Confidence 889999999999999999999999999999999999999999999999984 8899999998 64
No 20
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=4.5e-63 Score=512.89 Aligned_cols=294 Identities=23% Similarity=0.350 Sum_probs=241.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-CCCh
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRTT 166 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~~~~ 166 (588)
||||++|||||||||++|+++++++.. .+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ ++++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT-ILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc-eeccCCCCccCCH
Confidence 699999999999999999999998864 3689999999999999999999999999999999999 99999975 6678
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 246 (588)
+++++++++|++++||+||+||||||+++|+.|+|++ +++||||||||||||+++| +|||||||+++++++|+
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td--~s~GfdTA~~~~~~~i~ 150 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTD--YTIGFDTALNTIIDAVD 150 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcc--cCcChhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999974 5999999999999999998 99999999999999999
Q ss_pred HHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcC----
Q 007819 247 NVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQG---- 322 (588)
Q Consensus 247 nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~---- 322 (588)
+++.+|.|++|++|+|.||+ +.++.. +...++. ...+|||||-.++ ++.+++.+.+.++++
T Consensus 151 ~i~~ta~s~~rv~ivEvMGR-~~G~lA----l~~~la~------gad~iliPE~~~~----~~~l~~~i~~r~~~g~~~~ 215 (301)
T TIGR02482 151 KIRDTATSHERAFVIEVMGR-HAGDLA----LYSGIAT------GAEIIIIPEFDYD----IDELIQRLKEQHEAGKKHS 215 (301)
T ss_pred HHHHHhhcCCCEEEEEeCCC-CHHHHH----HHHHHHc------CCCEEEECCCCCC----HHHHHHHHHHHHHcCCCeE
Confidence 99999999999999997754 444321 1122221 2345666666554 345555555444332
Q ss_pred -ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecC
Q 007819 323 -VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFF 401 (588)
Q Consensus 323 -~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~l 401 (588)
++++||... +. +..++++|+++. | +++|...+
T Consensus 216 iIvvaEG~~~--------------------------------~~-------~~~l~~~l~~~~--g------~~~r~~~l 248 (301)
T TIGR02482 216 IIIVAEGNIV--------------------------------GS-------AKEVAKKIEEAT--G------IETRVTVL 248 (301)
T ss_pred EEEEeCCCcC--------------------------------Cc-------HHHHHHHHHHhc--C------CeeEEeec
Confidence 223333110 00 112344554443 2 89999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhH
Q 007819 402 GYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM 460 (588)
Q Consensus 402 Gy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~ 460 (588)
||.|||+.||+||+.+|+.||..|++++.+|.+|+|+++++.+ +..+||.++
T Consensus 249 G~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~~~ 300 (301)
T TIGR02482 249 GHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNK-------IVTHPIEEA 300 (301)
T ss_pred ChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEeeHHHh
Confidence 9999999999999999999999999999999999999999985 888999875
No 21
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=7e-63 Score=515.08 Aligned_cols=296 Identities=22% Similarity=0.337 Sum_probs=249.6
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccC-CCCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD-QIRT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~-k~~~ 165 (588)
+||||++|||||||||++|+++++.+. +.+++||||++||+||+++++++|+++.++.|+++||| +|||+|. ++++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT-FLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe-eeccCCCCccCC
Confidence 589999999999999999999999875 44789999999999999999999999999999999999 9999996 4667
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
++++++++++|++++||+|++||||||+++|++|+|+ +++||||||||||||++|| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd--~t~Gf~TA~~~~~~~i 149 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTD--YTIGFDTALNTVVEAI 149 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCc--cCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999995 4899999999999999998 9999999999999999
Q ss_pred HHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcC---
Q 007819 246 SNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQG--- 322 (588)
Q Consensus 246 ~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~--- 322 (588)
++++.+|.|++|++|+|.|| |+..+.. +..+++. ...+|||||-.++ ++.+++++.+.++++
T Consensus 150 ~~i~~ta~s~~rv~ivEvMG-R~~G~LA----~~~ala~------ga~~iliPE~~~~----~~~~~~~i~~~~~~g~~~ 214 (317)
T cd00763 150 DRIRDTSSSHQRISVVEVMG-RHCGDIA----LAAGIAG------GAEFIVIPEAEFD----REEVANRIKAGIERGKKH 214 (317)
T ss_pred HHHHHHHhcCCCEEEEEeCC-CChHHHH----HHHHHHc------CCCEEEeCCCCCC----HHHHHHHHHHHHHcCCCc
Confidence 99999999999999999665 4444321 1222221 2467777777665 466666666655442
Q ss_pred --ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEec
Q 007819 323 --VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400 (588)
Q Consensus 323 --~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~ 400 (588)
++++||... ++.++++++++. | +++|...
T Consensus 215 ~vivvaEG~~~-----------------------------------------~~~l~~~l~~~~--g------~~~r~~~ 245 (317)
T cd00763 215 AIVVVAEGVYD-----------------------------------------VDELAKEIEEAT--G------FETRATV 245 (317)
T ss_pred EEEEEeCCCCC-----------------------------------------HHHHHHHHHHHh--C------CCcceec
Confidence 223444210 112344555554 3 8899999
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhc
Q 007819 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVK 464 (588)
Q Consensus 401 lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e 464 (588)
+||.|||+.|++||+.+|+.||..|++++++|++|+|+++++.+ +..+||.++++.+
T Consensus 246 lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~~-------~~~~pl~~~~~~~ 302 (317)
T cd00763 246 LGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNEQ-------LVHHDIIDAIENM 302 (317)
T ss_pred cchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEecHHHHhhCC
Confidence 99999999999999999999999999999999999999999984 8899999998754
No 22
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.2e-59 Score=533.36 Aligned_cols=333 Identities=18% Similarity=0.247 Sum_probs=272.9
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC--CeEecCHhhHhchhhcCCccccccccCC-C
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ-I 163 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~ 163 (588)
+||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++++|+++.++.|+++||+ +|||+|.+ +
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~--~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~~~ 77 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAI--YVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT-IIGTARCKEF 77 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc-eecCCCCCcc
Confidence 589999999999999999999999774 4578999999999999999 9999999999999999999 99999987 5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH-----------------HHhcCCCceEEEeeecccCCCCCC
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGDLKNQ 226 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDNDL~~~ 226 (588)
++++..++++++|++++||+||+||||||+++|+.|+++ ..+++.+++|||||||||||+++|
T Consensus 78 ~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 677888999999999999999999999999999987753 345566899999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCChh----------------------hHHHHHHHHHHH
Q 007819 227 FVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLF----------------------DLTKQICDAVQA 284 (588)
Q Consensus 227 ~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL~----------------------~iv~~i~~~I~~ 284 (588)
| +|||||||+++++++|++++.+|.||+|++|+|.||. +..+. +..++|++.+.+
T Consensus 158 d--~TiGfdTA~~~i~~aid~i~~ta~Sh~R~fvvEvMGR-~~G~LAl~aalA~gad~iliPE~~~~~~~~~~i~~~l~~ 234 (745)
T TIGR02478 158 D--MTIGADSALHRICEAIDAISSTAQSHQRAFVVEVMGR-HCGYLALMAAIATGADYVFIPERPPEEGWEDQLCHKLKR 234 (745)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHhhhhccCCEEEEEEcCc-cccHHHHHHHhccCCCEEEecCCCCCchHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999997764 43321 124556666665
Q ss_pred HHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccc
Q 007819 285 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLS 364 (588)
Q Consensus 285 R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls 364 (588)
++..|++|++|+|+||+.+ ++||+..
T Consensus 235 ~~~~gk~~~iIvvaEG~~d-----------------------------------------------------~~g~~i~- 260 (745)
T TIGR02478 235 NRKAGKRKNIVIVAEGAID-----------------------------------------------------RDLNPIT- 260 (745)
T ss_pred HHHcCCCcEEEEEeCCccc-----------------------------------------------------ccCCccc-
Confidence 5555666666666666543 2344321
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ceEEEEe
Q 007819 365 QIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GYMATVT 441 (588)
Q Consensus 365 ~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t---G~mv~i~ 441 (588)
++.|++.|+++. | +++|...+||.||||.||+||+.+|+.||..|++++++|.+ |+|++++
T Consensus 261 --------~~~l~~~l~~~~--g------~~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~ 324 (745)
T TIGR02478 261 --------SEDVKDVLVERL--G------LDTRITVLGHVQRGGAPSAYDRILATRQGVEAVLAVLESTPETPSPVISLR 324 (745)
T ss_pred --------HHHHHHHHHHhc--C------CceEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 345666676654 2 88999999999999999999999999999999999999987 9999999
Q ss_pred cCCCCCCceeEeecchHhHhhhccccCCCCCCCCCcccccc---eEecCCChHHHHHHHHhhhcccCCcccC
Q 007819 442 NLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINP---ATVDMRGKAYELLRQNATRFLLDDLYRN 510 (588)
Q Consensus 442 n~~~~~~~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~---~~Vdl~g~~f~~~~~~r~~w~~~d~y~~ 510 (588)
+. ++..+||.++++.++ .-. +..+.+ .-++|.|..|...-..-......+....
T Consensus 325 ~~-------~~~~~pl~~~~~~~k-~v~-------~~~~~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~~~~ 381 (745)
T TIGR02478 325 GN-------KIVRKPLVEAVAQTK-TVA-------KAIKEKRFAEAMRLRGREFVENLATFLFLSIPDQDKK 381 (745)
T ss_pred CC-------EEEEEeHHHHHhhcC-CCC-------HHHHhccHHHHHHhcCHHHHHHHHHHHhhhccCCccc
Confidence 85 599999999998765 211 111222 2467888888876666666666655444
No 23
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=1e-58 Score=477.56 Aligned_cols=263 Identities=27% Similarity=0.413 Sum_probs=224.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-CCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~~~ 165 (588)
+||||++|||||||||++|+++++++. +.+++||||++||+||+++++++|+++.++.++++||+ +|||+|.+ +++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~--~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI--RRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH--HTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH--hcCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccc
Confidence 699999999999999999999999875 45789999999999999999999999999999999999 99999976 667
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
++.+++++++|++++||+||+||||||+++|+.|+|++. ++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd--~siGf~TA~~~~~~~i 150 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTD--YSIGFDTAVNYIAEAI 150 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSS--S-BTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCC--CCcccCchhHHHHHHH
Confidence 888999999999999999999999999999999998764 899999999999999998 9999999999999999
Q ss_pred HHHHHHhhhccceEEecccccc--cCCh----------------hhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchh
Q 007819 246 SNVCTDALSAEKVILGEEVAAS--KLTL----------------FDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPE 307 (588)
Q Consensus 246 ~nl~~dA~S~~kvlI~Ee~~~~--~~tL----------------~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe 307 (588)
++++.||.|++|++|+|.||++ ++++ ...++.+++.|.+|.+++++|++|+++||+.+..|-
T Consensus 151 ~~i~~~a~s~~rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~~~~~~~~~~i~~~~~~~k~~~iVvvsEG~~~~~~i 230 (282)
T PF00365_consen 151 DNIKTTARSHNRVFIVEVMGRNAGWLALAAALATGADLILIPEEPFDLDELLDDIKKRYERGKRYGIVVVSEGAKDGQPI 230 (282)
T ss_dssp HHHHHHHHHSTEEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSHHHHHHHHHHHHHHHHTTSSEEEEEEETTSBSSHBH
T ss_pred HHHHHhhcccCCceEEEeCCCCcCHHHHHHHhccCCCEEEEeccccchHHHHHHhhhhhcccCceEEEEecccccccccc
Confidence 9999999999999999977653 2222 233778888888888888888888888888752110
Q ss_pred HHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcC
Q 007819 308 VYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEG 387 (588)
Q Consensus 308 ~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g 387 (588)
..+++++.+++.. |
T Consensus 231 ----------------------------------------------------------------~~~~~~~~~~~~~--~ 244 (282)
T PF00365_consen 231 ----------------------------------------------------------------SSEFIKELLEEGL--G 244 (282)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHTT--T
T ss_pred ----------------------------------------------------------------ccccccccccccc--c
Confidence 0122233332222 2
Q ss_pred CCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 007819 388 TYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAA 431 (588)
Q Consensus 388 ~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~ 431 (588)
+++|...|||.||||.||+||+.+|..||..|++++.+
T Consensus 245 ------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 245 ------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp ------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999864
No 24
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=3e-58 Score=521.82 Aligned_cols=334 Identities=18% Similarity=0.226 Sum_probs=269.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC--CeEecCHhhHhchhhcCCccccccccCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
..+||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++.+|++++++.|.++||+ +|||+|.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~--~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT-~LGTsR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT-IIGSARCK 78 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC-cccCCCCC
Confidence 35799999999999999999999998774 5588999999999999999 7899999999999999999 99999976
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHH-----------------HHHHhcCCCceEEEeeecccCCCC
Q 007819 163 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA-----------------ETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 163 -~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~La-----------------e~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+++.+.+.+++++|++++||+||+||||||+++|..|+ ++..+++..++|||||||||||++
T Consensus 79 ~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 56778999999999999999999999999999999764 233445568999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCCh----------------------hhHHHHHHHHH
Q 007819 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTL----------------------FDLTKQICDAV 282 (588)
Q Consensus 225 ~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL----------------------~~iv~~i~~~I 282 (588)
+|| +|||||||+++++++|++|+.||.||+|++|+|.||. +..+ .+..++||+.+
T Consensus 159 gTD--~TiGfdTAl~~i~eaId~i~~tA~Sh~R~fVVEvMGR-~~G~LAl~aglA~gAd~ilIPE~p~~~~~~~~i~~~l 235 (762)
T cd00764 159 GTD--MTIGTDSALHRICEVVDAITTTAQSHQRTFVLEVMGR-HCGYLALVSGLATGADWIFIPERPPEDGWEDQMCRRL 235 (762)
T ss_pred CCc--CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCC-CchHHHHHHHhccCCCEEEecCCCCchhHHHHHHHHH
Confidence 999 9999999999999999999999999999999997754 4332 12355666666
Q ss_pred HHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcc
Q 007819 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQ 362 (588)
Q Consensus 283 ~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ 362 (588)
.+|++.||+|++|+|+||+.+ .+|+..
T Consensus 236 ~~~~~~gk~~~iIVVaEGa~d-----------------------------------------------------~~g~~i 262 (762)
T cd00764 236 SEHRSRGKRLNIIIVAEGAID-----------------------------------------------------DQLKPI 262 (762)
T ss_pred HHHHhcCCCcEEEEEeCCCcc-----------------------------------------------------ccCCCc
Confidence 666666667777777777653 112221
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ceEEE
Q 007819 363 LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GYMAT 439 (588)
Q Consensus 363 ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t---G~mv~ 439 (588)
.+..|++.|++++ | +++|...+||.|||+.||+||+.||+.||..|++++.+|.+ ++|++
T Consensus 263 ---------~~~~l~~~l~~~~--g------~d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~ 325 (762)
T cd00764 263 ---------TSEDVKDLVVERL--G------LDTRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDTPACVVS 325 (762)
T ss_pred ---------cHHHHHHHHHHhc--C------CCeeEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 1345677776665 3 89999999999999999999999999999999999999986 89999
Q ss_pred EecCCCCCCceeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCC
Q 007819 440 VTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDD 506 (588)
Q Consensus 440 i~n~~~~~~~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d 506 (588)
++|++ +..+||.+++...+ .-. .+- ..| =-..-++|.|..|+..-+........|
T Consensus 326 ~~~~~-------i~~~pl~e~v~~~k-~v~-~~~-~~~--~~~~a~~lr~~~f~~~~~~~~~~~~~~ 380 (762)
T cd00764 326 LNGNK-------AVRLPLMECVQLTK-DVQ-KAM-DEK--RFDEAAALRGKSFDKNWNLYKLLAIEL 380 (762)
T ss_pred EECCE-------EEEEEHHHHHhhcc-chh-hhh-hhh--hHHHHHHhcchhHHHHHHHHHhccccC
Confidence 99986 88899999987643 110 000 000 011235677777776555555555444
No 25
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.1e-59 Score=545.09 Aligned_cols=253 Identities=34% Similarity=0.616 Sum_probs=241.0
Q ss_pred CChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHh
Q 007819 269 LTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIK 348 (588)
Q Consensus 269 ~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~ 348 (588)
++|.+|++.|++.|.+|++.|++|+||+||||+++||||++.||+||+++++++.....+.++||||++++|+++|++|+
T Consensus 312 ~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~ 391 (1328)
T PTZ00468 312 RSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQ 391 (1328)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHH
Confidence 45788999999999999999999999999999999999999999999999977665567788999999999999999999
Q ss_pred hhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHH
Q 007819 349 KQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHI 428 (588)
Q Consensus 349 ~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~l 428 (588)
+||+.+||+|||+|+++|+||++|+++|+++|+++..+ |. . |.+++|+|||+|||+.||+||++|||+||+.|+++
T Consensus 392 ~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~~~--~~-~-f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l 467 (1328)
T PTZ00468 392 NQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVKKD--YI-L-DNVKTHYFGYEGRCALPSNFDASYCFALGHTAAAL 467 (1328)
T ss_pred HHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhhcc--cc-c-CCceEeecCchhhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 55 3 88999999999999999999999999999999999
Q ss_pred HHcCCCceEEEEecCCCCCCceeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcc
Q 007819 429 LAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLY 508 (588)
Q Consensus 429 i~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y 508 (588)
+.+|+||||++|+|++.++++|+++++||++|||+|+ |+| +.+|||+|++|||+|++|++|+++|++|+++|+|
T Consensus 468 ~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~E~-r~g-----~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y 541 (1328)
T PTZ00468 468 IDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIEL-RKG-----KSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYY 541 (1328)
T ss_pred HHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhHHh-hCC-----CccceeeecccCCCcHHHHHHHHHHHHhhhcCcc
Confidence 9999999999999999999999999999999999998 899 8999999999999999999999999999999999
Q ss_pred cCCcccccccCCCCCccceEEec
Q 007819 509 RNPGPVQFDGPGADAKAVTLCVE 531 (588)
Q Consensus 509 ~~pGpiQ~~g~~~~~~~~tl~~e 531 (588)
|+||||||+||.++.+++++...
T Consensus 542 ~~pGPiQ~~gp~~~~~~~~~~~~ 564 (1328)
T PTZ00468 542 RNPGPIQFDGPNSGITNYMISPP 564 (1328)
T ss_pred cCCCCeeeccCcccCcceeccCc
Confidence 99999999999999998887765
No 26
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.1e-55 Score=503.08 Aligned_cols=319 Identities=16% Similarity=0.226 Sum_probs=254.3
Q ss_pred CCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
...++||||++|||||||||++|+++++++. +.+.+||||++||.||+++++.+|++..++.|+++||| +|||+|..
T Consensus 386 ~~~~~rIaIltsGG~apGmNaair~vv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAPAGGMNAATRSAVRYAI--ARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCCchhHHHHHHHHHHHHH--hCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCC
Confidence 4556999999999999999999999998875 45789999999999999999999999999999999999 99999985
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-CCCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
. ++++++++++|++++||+||+||||||+++|..|+++..+. +.+++||||||||||||+++| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~t~GfdTA~~~~ 538 (745)
T TIGR02478 463 P--GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTE--YSLGSDTALNEI 538 (745)
T ss_pred c--hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--cCCCHHHHHHHH
Confidence 4 67899999999999999999999999999999999985432 356999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhhc-cceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHh
Q 007819 242 SQLISNVCTDALSA-EKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR 320 (588)
Q Consensus 242 ae~I~nl~~dA~S~-~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~ 320 (588)
+++|++++.+|.|+ +|++|+|.|| |+..+.. +..+++. ...+|||||-.++ ++.++++++.+.+
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMG-R~~G~LA----l~~alA~------gad~iliPE~~~~----~~~l~~~v~~i~~ 603 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMG-GYSGYLA----TMAGLAT------GADAAYIPEEGIS----LKDLQEDIEHLKE 603 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecC-ccccHHH----HHHHhhc------CCCEEEeCCCCCC----HHHHHHHHHHHHH
Confidence 99999999999998 5899999765 4555431 1233331 3579999999887 5667665555433
Q ss_pred cCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEec
Q 007819 321 QGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400 (588)
Q Consensus 321 ~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~ 400 (588)
+.... .. .. .. ++...+...+. . +..+++.++++.+.+ |++|...
T Consensus 604 ~~~~~---~~----~~----~i--------iv~~Eg~~~~~-----~-----~~~l~~~i~~e~~~~------~~~R~~~ 648 (745)
T TIGR02478 604 KFAHG---NR----AG----KL--------ILRNENASKNY-----T-----TDFIARIISEEAKGR------FDARTAV 648 (745)
T ss_pred HHhcC---CC----Cc----eE--------EEEeCCCccCC-----C-----HHHHHHHHHHHhcCC------CceEecc
Confidence 21000 00 00 00 00011111111 1 233445554333222 9999999
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHHcC------------CCceEEEEecCCCCCCceeEeecchHhHhhhcc
Q 007819 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAG------------LNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 465 (588)
Q Consensus 401 lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G------------~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~ 465 (588)
+||.||||.||+||+.+|+.||..|++++.+| .+|+|++++|.+ +..+||.++|+.+.
T Consensus 649 LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~-------~~~~p~~~~~~~~~ 718 (745)
T TIGR02478 649 LGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSN-------VLFTPVKGLLAKET 718 (745)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEEECCE-------EEEEEHHHHHhhcc
Confidence 99999999999999999999999999999998 799999999986 88999999776544
No 27
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.2e-52 Score=476.11 Aligned_cols=315 Identities=16% Similarity=0.201 Sum_probs=245.6
Q ss_pred CCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
+..++||||++|||||||||++|+++++++. +.+++||||++||+||+++++++|+++.++.|.++||| +|||+|.+
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~a~--~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~ 462 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGL--AHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTL 462 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCC
Confidence 3456899999999999999999999998764 45899999999999999999999999999999999999 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-CCCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
+ ++++++++++|++++||+||+||||||+++|..|+++..+. ..+|+|||||||||||+++|| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd--~siGfdTAln~~ 538 (762)
T cd00764 463 P--KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTD--FSLGSDTALNAL 538 (762)
T ss_pred c--HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--CCCCHHHHHHHH
Confidence 5 57899999999999999999999999999999999976433 256999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhhcc-ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHh
Q 007819 242 SQLISNVCTDALSAE-KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR 320 (588)
Q Consensus 242 ae~I~nl~~dA~S~~-kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~ 320 (588)
+++|++|+.+|.|++ ||+|+|.||+ +..+.. +...++ .| ..+|+|||-.++ ++.|.++++.+.+
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR-~~G~LA----~~aglA----~G--Ad~i~iPE~~~~----~~~l~~dv~~l~~ 603 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGG-YCGYLA----TMTGLA----VG--ADAAYVFEEPFN----IRDLQENVEHLTE 603 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCC-CccHHH----HHHHhh----cC--CCEEEeCCCCCC----HHHHHHHHHHHHH
Confidence 999999999999986 7999997765 454321 122333 23 569999999987 4556555544322
Q ss_pred cCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEec
Q 007819 321 QGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400 (588)
Q Consensus 321 ~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~ 400 (588)
+-. ...++.+. +-++..+..-+-..+++++++++ +.+ |++|...
T Consensus 604 ~~~---------------------~~~~~g~~-----~~~~~~se~~~~~~~~~~~~~~~----~~~------~~~R~~v 647 (762)
T cd00764 604 KMK---------------------TTIGRGLV-----LRNEKCNENYTTVFTYELYSEEG----KGV------FDCRTNV 647 (762)
T ss_pred HHH---------------------HHHhcCCe-----EeeeeeecCCccccHHHHHHHHH----hcC------CceEecc
Confidence 100 00000000 00011111000011244444443 223 9999999
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------CceEEEEecCCCCCCceeEeecchHhHhh
Q 007819 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---------------NGYMATVTNLKNPANKWRCGAAPITSMMT 462 (588)
Q Consensus 401 lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~---------------tG~mv~i~n~~~~~~~w~~~~iPl~~~~~ 462 (588)
|||.||||.||+|||.+|+.||..|++++.++. +.++.++++.+ +...|+..|.+
T Consensus 648 LGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~-------~~~~~~~~~~~ 717 (762)
T cd00764 648 LGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCVNGVKKYA-------VLFEPVEELKQ 717 (762)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCceEEEEEeCCE-------EEEeeHHHHHH
Confidence 999999999999999999999999999999853 67788888775 66677777766
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-53 Score=470.73 Aligned_cols=558 Identities=24% Similarity=0.207 Sum_probs=473.5
Q ss_pred CCChhhhhhhccCCCCCcCcCCCc----eeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCC
Q 007819 10 ELSGLQQLRSLYQPELPPCLQGTT----VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHP 85 (588)
Q Consensus 10 ~~s~lq~~R~~~~p~lp~~l~~~~----~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
.++++|-.|..|.|.||..+.+.+ ++...+.. .+..+.|++.||++++.+.-....+....|++..++...
T Consensus 45 ~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~-----~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~e 119 (666)
T KOG2440|consen 45 SIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRL-----AAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEE 119 (666)
T ss_pred chhhcchhhhCCcccCCCccccccccccccccccee-----ccchhHHHhhcCeeEecCCccchhHhhhCchhccccchH
Confidence 578899999999999999997752 33333322 256789999999988877544444444448888889999
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHH-hcCCCCEEEE----------------EcCchhhhhcCCeEecCHh--hHhc
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALK-LHNPKSTLLG----------------FLGGSEGLFAQKTLEVTKE--ILST 146 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~-~~~~~~~v~G----------------f~~G~~GL~~~~~~eLt~~--~v~~ 146 (588)
..+.|||++||+|||+|+||+|++-.+. .++.-.+.+| +..|++|++..++.++.-. .+..
T Consensus 120 lvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ 199 (666)
T KOG2440|consen 120 LVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAA 199 (666)
T ss_pred HhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHH
Confidence 9999999999999999999998876553 2233334444 4555999999999655544 5555
Q ss_pred hhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCC
Q 007819 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ 226 (588)
Q Consensus 147 ~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~ 226 (588)
++..+++ +...+.+.+++|++.++++.++++++|.+|||||++++++|..++|+++++++++.|++||||||||++.-
T Consensus 200 ia~~aD~--i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrg 277 (666)
T KOG2440|consen 200 IAGGADT--IFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRG 277 (666)
T ss_pred hhcCCCE--EEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccC
Confidence 5555554 44455555679999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCch--hHHHHHHHHHHHHHHHhhhccc---------------------------eEEecccccccCChhhHHHH
Q 007819 227 FVETNVGFD--TICKVNSQLISNVCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQ 277 (588)
Q Consensus 227 ~ie~S~GFd--TA~k~~ae~I~nl~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~ 277 (588)
+ .++||| |||+..+++|.+++.+|.|+.+ +.+++|+-+++.++......
T Consensus 278 g--~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~ 355 (666)
T KOG2440|consen 278 G--VPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYK 355 (666)
T ss_pred C--cccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHh
Confidence 7 566666 9999999999999999999876 56666787778888888899
Q ss_pred HHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCcccc--CccccCCchhhhhhccChhhHhhhhccCC
Q 007819 278 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVD--NISSQLSPWASALFEFLPPFIKKQLLLQP 355 (588)
Q Consensus 278 i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~--e~~~~ls~~~~~l~~~lp~~i~~qll~~r 355 (588)
+++.+..|..++.+|+. +|++++.+.++-+.|.++++.++....... -...++..|+.+. +++|..+..++....
T Consensus 356 ~~~~~~~~~~~~p~~~~--~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~-d~~~~~~~~dv~~w~ 432 (666)
T KOG2440|consen 356 ILDVVDPRAEQDPFYGE--IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAK-DALGELIWKDVGLWL 432 (666)
T ss_pred hhhccccccccCCCCce--eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhh-hhhhhhHHHHhhccc
Confidence 99999999999899998 999999999999999999988765443222 1344556666666 889999999999999
Q ss_pred CCCCCcccchhhH-HHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 007819 356 ESDDSAQLSQIET-EKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN 434 (588)
Q Consensus 356 D~~Gn~~ls~i~t-e~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t 434 (588)
+.+|+.+..+++| |++..++++.++.+++-+|.|.+..|.+..++++|++|++.|+.||+.||+..+..+-..-..+.+
T Consensus 433 ~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s 512 (666)
T KOG2440|consen 433 SQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFS 512 (666)
T ss_pred ccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccc
Confidence 9999999999998 999999999999999988988876699999999999999999999999999999999888888999
Q ss_pred ceEEEEecCCCCCCceeEeecchHhHhhhccccCCCCC--CCCC---cccccceEecCCChHHHHHHHHhhhcccCCccc
Q 007819 435 GYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGA--SSIG---RPAINPATVDMRGKAYELLRQNATRFLLDDLYR 509 (588)
Q Consensus 435 G~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~~~~g~~~--~~~~---~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~ 509 (588)
+.+.+..|...+..+|....-+++..+..+.+..|++- ...+ .|.+.++.|...+.+|+.|+++++.|++++.|.
T Consensus 513 ~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~ 592 (666)
T KOG2440|consen 513 LGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGADAAYVPEEGFSIKDLRENAEHLAEKMRYG 592 (666)
T ss_pred cccchhHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccccccccccccccccHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999988774334221 1122 789999999999999999999999999999999
Q ss_pred CCcccccccCCCCCccceEEecccchhhhHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHhh
Q 007819 510 NPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAM 579 (588)
Q Consensus 510 ~pGpiQ~~g~~~~~~~~tl~~e~~~y~~~~~~~~~~~~~~~~~~~~g~~~~~l~~a~~~l~~~~~~l~~~ 579 (588)
+|+|+||.+|.+|...-|+++++..|.++.+..+.+++.+..+-++||+.++.+++.+-|.+....+-..
T Consensus 593 ~~~~l~~r~e~a~~~~~t~~~~~~~~~~~~~~f~~~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~~~~~~ 662 (666)
T KOG2440|consen 593 NPRGLQLRNEGADANYTTLFLENIYSEEGKGKFQARTNVLGHIQQGGSPSPFDRNMGTKMAVKAIELITI 662 (666)
T ss_pred CCCceEEeCCCcchhhhHHHHHHHHhhhcccccceeeccccceecCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999886655443
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.6e-26 Score=252.42 Aligned_cols=282 Identities=21% Similarity=0.213 Sum_probs=224.8
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCC--eEecCHhhHhchhhcCCccccccccC-CCCChH
Q 007819 91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK--TLEVTKEILSTYKNQGGYDMLGRTKD-QIRTTE 167 (588)
Q Consensus 91 Iv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~--~~eLt~~~v~~~~n~GGs~~lgS~R~-k~~~~e 167 (588)
|+||||++||||++++.+++.. .+.+.++|+++.||.|++++. +.+++|+.++.+...||+ ++|+.|. .++..+
T Consensus 1 v~tsggd~~gmnaavr~~vr~~--i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt-~~g~ar~~~f~~~~ 77 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMG--IYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGT-LIGTARCKAFRGRE 77 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhc--cccCceEEEEecccccccccccchhhcchhhhCCcccCCCc-cccccccccccccc
Confidence 6899999999999999999876 588999999999999999965 779999999999999999 9999885 477888
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHH-----------------hcCCCceEEEeeecccCCCCCCCCCC
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA-----------------EAKCPTKVVGVPVTLNGDLKNQFVET 230 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~-----------------~~g~~i~VIgVPKTIDNDL~~~~ie~ 230 (588)
.+.++..++-+.+|+.|+++|||+|++.|+.+-.+.. ..+..+.++|++.+||||+.+++ .
T Consensus 78 gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~--~ 155 (666)
T KOG2440|consen 78 GRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTD--M 155 (666)
T ss_pred ceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccc--e
Confidence 9999999999999999999999999999998765432 13567899999999999999999 9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHH
Q 007819 231 NVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYA 310 (588)
Q Consensus 231 S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~ 310 (588)
++|-|||..- |+|+.|..+|.||.|.|+.|.|+.....+. +...|+ +.++.|++||-..+. | ++
T Consensus 156 ~iG~dsal~r--e~id~~~~ta~sh~RgFv~evmgr~cg~la-----lv~~ia------~~aD~i~~pe~~~~~-~--~q 219 (666)
T KOG2440|consen 156 TIGIDSALHR--EAIDAITSTAQSHSRGFVAEVMGRHCGYLA-----LVAAIA------GGADTIFIPERPGED-P--EQ 219 (666)
T ss_pred eeccccchhh--hhhhhhhhhhccCcceEEeeehhhccchHH-----HHHHhh------cCCCEEEecCCCCCC-H--HH
Confidence 9999999888 999999999999999999998765433331 112222 457899999988875 3 34
Q ss_pred HHHHHHHHHhcC---ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcC
Q 007819 311 LLKEIHSLLRQG---VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEG 387 (588)
Q Consensus 311 li~el~~~l~~~---~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g 387 (588)
+.+-+...-+.+ +.+.+|. -|..|... +++.|++++.+++ +
T Consensus 220 ~~~~l~~~r~~Gln~viVigG~-------------------------~~~~ga~i---------~ae~vk~~~~k~l--v 263 (666)
T KOG2440|consen 220 LCEILDSIRKRGLNIVIVIGGA-------------------------IDNTGAPI---------IAEEVKERKLKVL--V 263 (666)
T ss_pred HHHHHHHHHhCCCCEEEEEecc-------------------------cCCCCCcc---------cHHHHHHhhhhee--e
Confidence 444444433333 1223321 23333332 3555565555544 2
Q ss_pred CCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCc
Q 007819 388 TYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNG 435 (588)
Q Consensus 388 ~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG 435 (588)
+.++...+|+.||++.|++||+.+|..+|..|+..++.....
T Consensus 264 ------~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s 305 (666)
T KOG2440|consen 264 ------VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES 305 (666)
T ss_pred ------ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh
Confidence 789999999999999999999999999999999988775443
No 30
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=90.23 E-value=0.51 Score=50.42 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHH
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae 243 (588)
.|.++-..+++.+.++++|-+++.|||||.+..+.-. +.+++|.|||.=.-| +|-=|-.-=...++
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~--------~SgvfA~~P~~aa~ 149 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKN--------YSGVFALSPEDAAR 149 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccce--------eccccccChHHHHH
Confidence 3667888899999999999999999999988765432 457999999953332 22225555556666
Q ss_pred HHHHHHHH
Q 007819 244 LISNVCTD 251 (588)
Q Consensus 244 ~I~nl~~d 251 (588)
+...++..
T Consensus 150 l~~~~lkg 157 (355)
T COG3199 150 LLGAFLKG 157 (355)
T ss_pred HHHHHhcc
Confidence 66666554
No 31
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.20 E-value=0.44 Score=49.40 Aligned_cols=56 Identities=23% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCC-----cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH
Q 007819 167 EQVNAALTACKNLNL-----DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (588)
Q Consensus 167 e~~~~i~~~l~~l~I-----d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 239 (588)
+-.+++.+.++.+++ |.+|+||||||+-.|+..+. +.+++|+||- . -++||=|..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN----------~--G~lGFL~~~~ 75 (259)
T PRK00561 15 PVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGIN----------T--GHLGFYTSFN 75 (259)
T ss_pred HHHHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEe----------c--CCCccccccC
Confidence 344455556655555 99999999999998877643 3468999997 2 3789988543
No 32
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=90.19 E-value=0.61 Score=47.98 Aligned_cols=55 Identities=22% Similarity=0.116 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCC------cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhH
Q 007819 166 TEQVNAALTACKNLNL------DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~I------d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 237 (588)
++-.+.+-+..+++++ |.+++||||||+-.|+.... +.+++|+||-. -++||=|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~------------G~lGFL~~ 65 (246)
T PRK04761 5 PEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR------------GSVGFLMN 65 (246)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC------------CCCCcccC
Confidence 3434445555666677 99999999999998877643 33589999973 36788763
No 33
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.21 E-value=1.3 Score=46.15 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcC-------CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 166 TEQVNAALTACKNLN-------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~-------Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
.+-.+++.+.|++++ .|.+|+||||||+-.|++.... ...+++++||. . -++||=|..
T Consensus 14 ~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN----------~--G~lGFL~~~ 78 (265)
T PRK04885 14 KRVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVH----------T--GHLGFYTDW 78 (265)
T ss_pred HHHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEe----------C--CCceecccC
Confidence 344555555665543 6899999999999888766431 11368999997 2 478998864
Q ss_pred H--HHHHHHHHHH
Q 007819 239 K--VNSQLISNVC 249 (588)
Q Consensus 239 k--~~ae~I~nl~ 249 (588)
. -+-+.+.++.
T Consensus 79 ~~~~~~~~l~~i~ 91 (265)
T PRK04885 79 RPFEVDKLVIALA 91 (265)
T ss_pred CHHHHHHHHHHHH
Confidence 3 2334444443
No 34
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=88.89 E-value=11 Score=36.53 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=74.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+||+++.+...|-.+.++.|+-+.++.. +.++.- +. .. .+++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~--g~~l~~--------------------------------~~---~~-~~~~ 42 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVLL--------------------------------AN---SQ-NDAE 42 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc--CCeEEE--------------------------------Ee---CC-CCHH
Confidence 5899998878899999999999888642 111110 00 01 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n 247 (588)
...+.++.+...++|++|+.+.+.+... ..+.+.+.+ +++|.+..+.+. .... .++++|.. +....+..-
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~--~~v~~d~~-~~~~~~~~~ 112 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRV--PSVGSDNE-QAGYLAGEH 112 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--Cccc--ceEecCcH-HHHHHHHHH
Confidence 5566777777789999999988776544 234444344 788887766654 1122 56777654 233333333
Q ss_pred HHHHhhhccceEEe
Q 007819 248 VCTDALSAEKVILG 261 (588)
Q Consensus 248 l~~dA~S~~kvlI~ 261 (588)
+.... ++|+.++
T Consensus 113 l~~~g--~~~i~~i 124 (264)
T cd01537 113 LAEKG--HRRIALL 124 (264)
T ss_pred HHHhc--CCcEEEE
Confidence 33222 5665554
No 35
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=87.01 E-value=2.4 Score=37.77 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=59.9
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||.||=|||- =|+..|.+. +.....+||-+.+ .||+.-++.+. .+ +.
T Consensus 1 MkVLviGsGgR---EHAia~~l~----~s~~v~~v~~aPG-----------------------N~G~~~~~~~~-~~-~~ 48 (100)
T PF02844_consen 1 MKVLVIGSGGR---EHAIAWKLS----QSPSVEEVYVAPG-----------------------NPGTAELGKNV-PI-DI 48 (100)
T ss_dssp EEEEEEESSHH---HHHHHHHHT----TCTTEEEEEEEE-------------------------TTGGGTSEEE--S--T
T ss_pred CEEEEECCCHH---HHHHHHHHh----cCCCCCEEEEeCC-----------------------CHHHHhhceec-CC-CC
Confidence 58888888873 355555553 3344567887663 23443343332 22 45
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.+.+.+++.|++++|| |||||-..-+. +=|+++|++.| |+|+|=.
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~g--i~vfGP~ 93 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVGPEAPLV--AGLADALRAAG--IPVFGPS 93 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES--
T ss_pred CCHHHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCC--CcEECcC
Confidence 6789999999999999 88899888755 45888898887 6887744
No 36
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=86.79 E-value=0.54 Score=49.05 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 174 ~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
......+.|.+|++|||||+..|+.... +.+++|+||+
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin 107 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGIN 107 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEE
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeec
Confidence 3456689999999999999999887754 3479999999
No 37
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.73 E-value=2.5 Score=44.40 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=38.3
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH--HHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~nl~ 249 (588)
+.|.+|+||||||+-.|+.... +.+++|+||- . -++||=|.. +.+-+.+.++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN----------~--G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIH----------A--GHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEe----------C--CCcccCCcCCHHHHHHHHHHHH
Confidence 6899999999999877776643 3368999996 2 478998874 34445555554
No 38
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.21 E-value=41 Score=33.46 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=71.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.|||++..-..|-...++.|+-+.++....+..++ +..+. .+++
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~---------------------------------~~~~~---~~~~ 44 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT---------------------------------VVSAD---YDLN 44 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE---------------------------------EccCC---CCHH
Confidence 47888888788888999999988886532222221 11111 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n 247 (588)
.....++.+...++|++++.+.+... ....+ +.+.+.+ ++||.+-. +..... .++|+|.. .....+..-
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~~--ipvv~~~~----~~~~~~--~~V~~d~~-~~g~~~~~~ 113 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAAG--IVVVAVDV----AAEGAD--ATVTTDNV-QAGEISCQY 113 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHCC--CeEEEecC----CCCCcc--ceeeechH-HHHHHHHHH
Confidence 55667888888999999998765431 12233 4444444 78887733 222222 56777752 222233333
Q ss_pred HHHHhhhccceEEe
Q 007819 248 VCTDALSAEKVILG 261 (588)
Q Consensus 248 l~~dA~S~~kvlI~ 261 (588)
+...+.-+.++.++
T Consensus 114 l~~~~~g~~~i~~i 127 (271)
T cd06321 114 LADRLGGKGNVAIL 127 (271)
T ss_pred HHHHhCCCceEEEE
Confidence 33322345564443
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.58 E-value=1.9 Score=44.45 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 239 (588)
+.|.+|+||||||+-.|+... +++|+||- . -++||=|...
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin----------~--G~lGfl~~~~ 80 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFK----------A--GRLGFLSSYT 80 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEe----------C--CCCccccccC
Confidence 679999999999998887653 47999997 2 3688887643
No 40
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=82.70 E-value=2.4 Score=45.63 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc--------------CCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA--------------KCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~--------------g~~i~VIgVPKTIDND 222 (588)
+.++.+++++.+++.+.|.+|-|||--+++.|..++-..... +-.+++|.||-|--.-
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtG 134 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTG 134 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccc
Confidence 568899999999999999999999999999999888876522 1127999999776543
No 41
>PLN02929 NADH kinase
Probab=82.42 E-value=1.5 Score=46.35 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=34.6
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee---cccCC--CCCC-CCCCCCCchhHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV---TLNGD--LKNQ-FVETNVGFDTICK 239 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK---TIDND--L~~~-~ie~S~GFdTA~k 239 (588)
+.|.+|++|||||+-.|+... ..+++|+||-. +.|.- +.+. |-..++||=+++.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~ 123 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT 123 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCC
Confidence 568999999999999887764 23589999853 22221 0011 1013788888754
No 42
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.19 E-value=2.6 Score=44.75 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=38.3
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH--HHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~nl~ 249 (588)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||=|.. +.+-+++..+.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL------------GHVGFLAEAEAEDLDEAVERVV 126 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec------------CCCceeccCCHHHHHHHHHHHH
Confidence 6899999999999998887743 23589999982 378997764 33344444444
No 43
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=80.60 E-value=4.2 Score=43.31 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc--CCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA--KCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~--g~~i~VIgVPKT 218 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-..... .-.+++|.||-|
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 567889999999999999999999999998888776543321 224799999966
No 44
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.52 E-value=3.6 Score=43.42 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH--HHHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNVCTD 251 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~nl~~d 251 (588)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||=|... -+-+++.++...
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT------------GRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec------------CCCCcccccCHHHHHHHHHHHHcC
Confidence 6899999999999888776643 23689999972 4789998754 444555555443
No 45
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.10 E-value=3.5 Score=43.74 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH--HHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNV 248 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~nl 248 (588)
+.|.+|+||||||+-.|+.... ..+++|+||- . -++||=|... .+-+.+.++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN---------~---G~lGFLt~~~~~~~~~~l~~l 121 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTIN---------T---GHLGFLTEAYLNQLDEAIDQV 121 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEe---------C---CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999988877643 3468999995 1 3889988643 333444444
No 46
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=79.35 E-value=3.5 Score=46.55 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=38.2
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH--HHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~nl~ 249 (588)
++|.+|+||||||+-.|+.+.. +..++|+||- . -++||=|.. .-+-+.+..+.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~--G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------M--GSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------C--CCcceecccCHHHHHHHHHHHH
Confidence 6899999999999998887753 3458999994 2 489998764 23334444443
No 47
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.23 E-value=3.9 Score=42.51 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcC---------CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 168 QVNAALTACKNLN---------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 168 ~~~~i~~~l~~l~---------Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
-.+++.+.|++++ .|.+|++|||||+-.|+..+.. . .+++|+||.- . -++||=|..
T Consensus 18 ~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~--G~lGFL~~~ 82 (264)
T PRK03501 18 KVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------K--DQLGFYCDF 82 (264)
T ss_pred HHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------C--CCCeEcccC
Confidence 3444555555543 6899999999999888776431 1 1478899872 1 378887653
No 48
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=78.67 E-value=16 Score=39.49 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHc---CCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l---~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++. +.|.+|-|||--+++.|..++-..... +-.+++|.||-|-
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 668899999999988 999999999999999988877543211 1125688888543
No 49
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=78.61 E-value=5.1 Score=43.19 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeecccC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLNG 221 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTIDN 221 (588)
+.+...++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gt 134 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGT 134 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcc
Confidence 578899999999999999999999999999988887654211 114799999966533
No 50
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=78.34 E-value=5.7 Score=43.04 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC--------------CCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK--------------CPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g--------------~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.....+ -.+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 5678999999999999999999999999999887776543211 126899999664
No 51
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=78.04 E-value=4.7 Score=43.05 Aligned_cols=53 Identities=30% Similarity=0.440 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|.-++
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 467899999999999999999999999999988887543 58999999886555
No 52
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.58 E-value=2.4 Score=44.82 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||=|..
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFL~~~ 109 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ------------GHLGFLTQI 109 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec------------CCCeEeecc
Confidence 6899999999999998887754 23689999972 378998863
No 53
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.36 E-value=5.4 Score=42.74 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
.+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+ .+++|.||-|.-.+
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 5778999999999999999999999999999988888654 47999999887443
No 54
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.19 E-value=2.5 Score=44.17 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=33.0
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
+.|.+++||||||+-.|+.... +.+++|+||- . -++||=|..
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn----------~--G~lGFL~~~ 83 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGIN----------R--GNLGFLTDI 83 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------C--CCCcccccC
Confidence 6899999999999998877643 3368999996 1 378997754
No 55
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=76.35 E-value=5.7 Score=41.99 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+. + .+++|.||-|.-.+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 6688999999999999999999999999988888877543 2 47999999776554
No 56
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=76.03 E-value=6 Score=42.50 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
.+.+..+++.+.+++.+.|.+|-|||--.++.|..+| +. +| +++|.||-|.-.|
T Consensus 71 ~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--rg--ip~I~IPTT~~td 124 (350)
T PRK00843 71 ATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--LG--IPFISVPTAASHD 124 (350)
T ss_pred CCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--cC--CCEEEeCCCccCC
Confidence 4678899999999999999999999998888888887 32 34 7999999997544
No 57
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.75 E-value=8.5 Score=44.30 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
++|.+|+||||||+-.|+.... ..+++|+||- . -++||=|..
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin----------~--G~lGFL~~~ 389 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICIN----------M--GTVGFLTEF 389 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------C--CCCCcCccc
Confidence 5789999999999998887643 3468999996 2 489998764
No 58
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=75.27 E-value=6.3 Score=42.07 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++ +. + .+++|.||-|.-+|-.
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a-~~--~--~~p~i~iPTT~~t~s~ 117 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA-YK--L--GIPFISVPTAASHDGI 117 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEecCcccCCcc
Confidence 568889999999999999999999998888888887 32 2 4799999999866544
No 59
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=75.13 E-value=8 Score=42.06 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC--------------CCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK--------------CPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g--------------~~i~VIgVPKT 218 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+...+ ..+++|.||-|
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 6688999999999999999999999999998888776432211 13678888843
No 60
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.09 E-value=3.3 Score=43.67 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 239 (588)
+.|.+|++|||||+-.|+.... +.+++|+||-. -++||=|...
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~------------G~lGFl~~~~ 105 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR------------GNLGFLTDLD 105 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC------------CCCCcccccC
Confidence 6899999999999988887643 23589999972 3688887755
No 61
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=74.74 E-value=7.3 Score=42.71 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~ 202 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~ 128 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALL 128 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHH
Confidence 55789999999999999999999999999998777654
No 62
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=74.61 E-value=7.6 Score=42.05 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 668899999999999999999999999999888777543210 1247899999553
No 63
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=74.50 E-value=19 Score=32.75 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=51.6
Q ss_pred hhHhchhhcCCccccccccCCCC-ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 142 EILSTYKNQGGYDMLGRTKDQIR-TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 142 ~~v~~~~n~GGs~~lgS~R~k~~-~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
.+...|...|-. ++.|+..-.. +++.+.+.++.+.+.++-||++--|..--.--..+-+++.+.+ ++++.+|.
T Consensus 34 ~d~~~~l~~gEl-vlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 34 PDPSDWLRGGEL-VLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred CCHHHhCCCCeE-EEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcC--CCEEEeCC
Confidence 367777665555 7777765444 5566899999999999999999555332244455556665555 79999995
No 64
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=74.43 E-value=8 Score=41.92 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 5688999999999999999999999999999988774
No 65
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.20 E-value=2.4 Score=44.32 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=32.6
Q ss_pred cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH
Q 007819 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (588)
Q Consensus 179 l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 239 (588)
.+.|.+|++|||||+-.|..+++ .+++|+|||. -+.||=|...
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~~------~~~pi~gIn~------------G~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKTK------KDIPILGINM------------GTLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhcC------CCCeEEEEeC------------CCCCccccCC
Confidence 37899999999999998877432 3689999992 2558877543
No 66
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.64 E-value=6.6 Score=41.46 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH--HHHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 250 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~nl~~ 250 (588)
+.|.++++|||||+-.|+.... +.+++|+||.. -++||=|.. +-+.+++..+..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~------------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR------------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC------------CcccccccCCHHHHHHHHHHHHc
Confidence 6899999999999988875542 34689999983 368998763 334555555543
No 67
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=73.40 E-value=6.8 Score=41.95 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+...++.+.+++.+.|.+|-|||--+++.|..++-. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999998888753 248999999774
No 68
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=73.36 E-value=94 Score=30.62 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=79.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
|||+.....-|-...+..|+-++++... .++.-+ +.+. .+.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g--~~~~~~--------------------------------~~~~---~d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELG--YEVEIV--------------------------------FDAQ---NDPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHT--CEEEEE--------------------------------EEST---TTHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcC--CEEEEe--------------------------------CCCC---CCHHH
Confidence 6888888888877778888888887642 333211 0000 13456
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC-CCCCCCCCCCCchhHHHHHHHHHHH
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQLISN 247 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~S~GFdTA~k~~ae~I~n 247 (588)
....++++...++|++++..-+.+... ..| +.+.+.| |+||. +|+| .+......++|+|.. +....+...
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~-~~l-~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA-PFL-EKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH-HHH-HHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH-HHH-HHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 667889999999999998888775433 333 4456666 68886 7777 444555588898743 444444444
Q ss_pred HHHHhhhccceEEe
Q 007819 248 VCTDALSAEKVILG 261 (588)
Q Consensus 248 l~~dA~S~~kvlI~ 261 (588)
+........++++.
T Consensus 115 l~~~~~~~~~v~~~ 128 (257)
T PF13407_consen 115 LAEKLGAKGKVLIL 128 (257)
T ss_dssp HHHHHTTTEEEEEE
T ss_pred HHHHhccCceEEec
Confidence 44444333566655
No 69
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=73.25 E-value=7.1 Score=41.83 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 164 RTTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
++.+.++++++.+++.++ |.+|-|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-rg--ip~i~VPTT~ 121 (345)
T cd08195 66 KSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYM-RG--IDFIQIPTTL 121 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHh-cC--CCeEEcchhH
Confidence 356889999999999999 99999999999988888875433 34 7999999887
No 70
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=73.03 E-value=9.4 Score=41.62 Aligned_cols=55 Identities=29% Similarity=0.299 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHh---------c----CCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE---------A----KCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~---------~----g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... . ...+++|.||-|-
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 56889999999999999999999999999998887742211 0 1246888888443
No 71
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=72.94 E-value=9 Score=41.89 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA~ 99 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMWL 99 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 5678999999999999999999999999999988773
No 72
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=72.39 E-value=6.1 Score=42.69 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHcCC----cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 164 RTTEQVNAALTACKNLNL----DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~I----d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
++.+..+++.+.+.+.+. |.+|-|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 68 ~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~-rg--~p~i~VPTT~ 124 (354)
T cd08199 68 KTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYR-RG--TPYVRIPTTL 124 (354)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhc-CC--CCEEEEcCcc
Confidence 366889999999999999 99999999988888888876433 34 7999999996
No 73
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=72.38 E-value=9.1 Score=41.56 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc---------------CCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---------------KCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~---------------g~~i~VIgVPKT 218 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..... .-.+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 568899999999999999999999999998887666432211 123788999955
No 74
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=72.34 E-value=8.8 Score=41.64 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~ 202 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 56789999999999999999999999999998877654
No 75
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=72.25 E-value=8 Score=41.32 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+. |.+|.|||--.++.|..+|-... + .+++|.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYM-R--GIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHc-c--CCCEEEecCch
Confidence 56889999999999998 89999999999988888875332 3 47999999886
No 76
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=72.05 E-value=9.3 Score=41.22 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHh-----------------cCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-----------------AKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~-----------------~g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+.. ....+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 56789999999999999999999999999998888764311 01247899999663
No 77
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=71.95 E-value=9.5 Score=41.35 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHh-------------cCCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~-------------~g~~i~VIgVPKT 218 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... ....+++|.||-|
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 56789999999999999999999999999998887643211 1124788888833
No 78
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=71.40 E-value=11 Score=40.68 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHh------------cCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE------------AKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~------------~g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... ..-.+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 66889999999999999999999999999998877643211 01247889999553
No 79
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=71.06 E-value=10 Score=41.05 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHH----------h---cCCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA----------E---AKCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~----------~---~g~~i~VIgVPKT 218 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-... . ..-.+++|.||-|
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 5678999999999999999999999999998887763211 0 1124789999966
No 80
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=70.94 E-value=10 Score=40.93 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 164 RTTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
++.+..+++.+.+.+.+. |.+|.|||--+.+.|..+|-.+. +| ++.|.||.|.-- .++.++|--|+++.
T Consensus 57 k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~-rg--i~~i~iPTTlla-----~vds~ig~k~~vn~ 128 (346)
T cd08196 57 KSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYM-RG--VSWSFVPTTLLA-----QVDSCIGSKSSINV 128 (346)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHH-cC--CCeEEecccHHH-----hhhccccccceecC
Confidence 366889999999999999 89999999988888888876443 45 699999998631 12356777776664
Q ss_pred H
Q 007819 241 N 241 (588)
Q Consensus 241 ~ 241 (588)
.
T Consensus 129 ~ 129 (346)
T cd08196 129 G 129 (346)
T ss_pred C
Confidence 3
No 81
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=69.86 E-value=9.1 Score=40.98 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.+ .+++|.||-|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 567889999999999999999999999999988887643 47999999764
No 82
>PRK15138 aldehyde reductase; Provisional
Probab=69.48 E-value=12 Score=41.02 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~ 202 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~ 107 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAA 107 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHH
Confidence 56789999999999999999999999999998887743
No 83
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=68.38 E-value=10 Score=40.77 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+. |.+|-|||--+++.|..+|-.+. + .+++|.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYM-R--GIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhc-C--CCCEEEcCchh
Confidence 56889999999999988 99999999998888887775322 3 47999999997
No 84
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=68.30 E-value=10 Score=40.99 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTta 118 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY---L--GVPVVIVPTIA 118 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH---c--CCCEEEeCCcc
Confidence 44678899999999999999999999988888888743 2 47999999773
No 85
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=68.13 E-value=21 Score=38.10 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
.+.+..+++++.+++ +.|.+|-|||--.++.|..+| ++ ++ +++|.||-|.-+|
T Consensus 65 p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 65 PDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred CCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 366788899999988 999999999998888888887 43 34 7999999998554
No 86
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=68.00 E-value=12 Score=40.46 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~ 202 (588)
+.+...++++.+++.+.|.+|-|||--.++.|..++-.
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~ 97 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAAL 97 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH
Confidence 45788999999999999999999999999988877654
No 87
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=67.55 E-value=11 Score=42.57 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=76.5
Q ss_pred CEEEEEcCchhhhhcCCeEecCHhhHhchhhc--CCccccccccCCCCChHHHHHHHHHHHHcCC---cEEEEecCcccH
Q 007819 119 STLLGFLGGSEGLFAQKTLEVTKEILSTYKNQ--GGYDMLGRTKDQIRTTEQVNAALTACKNLNL---DGLVIIGGVTSN 193 (588)
Q Consensus 119 ~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~--GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~I---d~LviIGGddS~ 193 (588)
..|+-..++..+. .++.+.++++.+..+... .-..+.=..-..-++-+.++++++.+.+.++ |.+|.|||--..
T Consensus 172 ~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~ 250 (488)
T PRK13951 172 HLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALT 250 (488)
T ss_pred eeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 3455444444444 356677787776553211 0111111111233467889999999999999 999999999888
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 194 TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 194 ~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
+.|-.+|-.+. +| |+.|.||-|+-- .++.|+|--|++++
T Consensus 251 D~agf~A~~y~-RG--i~~i~vPTTlla-----~vDssiggK~~vn~ 289 (488)
T PRK13951 251 DFTGFVASTFK-RG--VGLSFYPTTLLA-----QVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHh-cC--CCeEecCccHHH-----HHhcCCCCCeeeeC
Confidence 88888887654 45 899999999854 34488888888875
No 88
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=67.53 E-value=5.6 Score=41.89 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=32.6
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 237 (588)
+.|.+|++|||||+-.|..... +.+++++||- . -++||=|.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~--G~lGFL~~ 103 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------H--GRLGFITD 103 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------C--CCcccccc
Confidence 6799999999999998887643 3468999997 2 37788875
No 89
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=66.34 E-value=96 Score=30.88 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
+...+.++.+.+ ++|+++++..+.+... ..+ +.+.+.| ++||. +|++..+.+...+++.|
T Consensus 46 ~~~~~~i~~~~~-~vdgiii~~~~~~~~~-~~i-~~~~~~~--ipvV~----~~~~~~~~~~~~~V~~d 105 (275)
T cd06307 46 AALAAALLRLGA-RSDGVALVAPDHPQVR-AAV-ARLAAAG--VPVVT----LVSDLPGSPRAGYVGID 105 (275)
T ss_pred HHHHHHHHHHHh-cCCEEEEeCCCcHHHH-HHH-HHHHHCC--CcEEE----EeCCCCCCceeeEEccC
Confidence 344566777888 9999999987643211 223 4444444 67774 45655432211345555
No 90
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=66.26 E-value=15 Score=39.95 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc---------------CCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---------------KCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~---------------g~~i~VIgVPKT 218 (588)
+.+...++++.+++.+.|.+|-|||--+++.|..++-..... .-.+++|.||-|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 457889999999999999999999999999887665322110 113788999855
No 91
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=66.15 E-value=12 Score=40.08 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
+.+...++++.+++.+.|.+|-|||--.++.|..++.. . .+++|.||-|--.|
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~---~--~~p~i~VPTtagtg 114 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR---L--DKPIVIVPTIASTC 114 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH---c--CCCEEEeCCccccC
Confidence 56788999999999999999999999999998888753 2 47999999774444
No 92
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=65.06 E-value=17 Score=39.31 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~ 203 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~ 104 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA 104 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 667899999999999999999999999998887776643
No 93
>PRK11914 diacylglycerol kinase; Reviewed
Probab=64.95 E-value=17 Score=38.10 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+..+.++.+.+.+.|.+|++|||||...+.. .+. +.++++--+|.==-||+. .++|..+
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA-----r~lg~~~ 110 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA-----REFGIPT 110 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH-----HHcCCCC
Confidence 345566666666778899999999999886642 222 335788889987788887 4667653
No 94
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=64.35 E-value=21 Score=39.60 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHH-HHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNT-DAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~-~A~~Lae~~~~~g~~i~VIgV 215 (588)
.-+.+.+.|++-++|++|..-.-||-+ .++..++++.+.| |+||+|
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~G--IPvV~i 370 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHI 370 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEE
Confidence 456799999999999999998877754 4677888888877 566665
No 95
>PLN02727 NAD kinase
Probab=63.78 E-value=6.7 Score=47.22 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH--HHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~nl~ 249 (588)
++|.+|+||||||+-.|+.+.. +..++|+||- . -++||=|-. .-+.+.+.++.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGIN----------l--GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFN----------L--GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEe----------C--CCccccccCCHHHHHHHHHHHH
Confidence 6899999999999999888753 3468999997 3 489998754 33445555544
No 96
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=63.55 E-value=19 Score=38.77 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHcC--CcEEEEecCcccHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAET 202 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~--Id~LviIGGddS~~~A~~Lae~ 202 (588)
+.+..+++.+.+++.+ .|.+|-|||--.++.|..++-.
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~ 102 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 5577888999999888 9999999999999988776654
No 97
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=63.07 E-value=15 Score=39.71 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCCc---EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+-+..+++.+.+++.++| .+|-|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~-rg--ip~I~IPTTl 120 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLF-RG--IRLVHIPTTL 120 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-cC--CCEEEecCcc
Confidence 568899999999999999 9999999888888877765332 34 7999999885
No 98
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=62.94 E-value=19 Score=39.18 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKT 218 (588)
+.++..++++.+++.+.|.+|-|||--.++.|..++-.+... +-.+++|.||-|
T Consensus 64 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 64 PRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 345577778889999999999999999999998887544211 114788999955
No 99
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=62.56 E-value=21 Score=38.94 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+..+++...+...+.|.++=|||--+.+.|..+|..+ ++++|.||-+=.+|=.
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~-----~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL-----GLPFISVPTIASTDAI 123 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc-----CCCEEEecCccccccc
Confidence 667889999988889999999999999999999888753 5899999988777765
No 100
>PLN02834 3-dehydroquinate synthase
Probab=61.74 E-value=17 Score=40.52 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHHcCCc---EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 164 RTTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
++.+.++++++.+.+.++| .+|-|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~-rg--iplI~VPTTl 199 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQ-RG--VNFVQIPTTV 199 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhc-CC--CCEEEECCcC
Confidence 4668899999999999998 9999999988888877764332 34 7999999984
No 101
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=61.33 E-value=21 Score=39.39 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~La 200 (588)
+.+...++++.+++.+.|.+|-|||--.++.|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 567899999999999999999999999998887765
No 102
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=61.16 E-value=75 Score=31.78 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch--hHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD--TICKVNSQ 243 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd--TA~k~~ae 243 (588)
.+.....++.+...++|++++.+.+.... . .+ +++.++| ++||.+ |++...+....++|.| .+.+..++
T Consensus 43 ~~~~~~~i~~~~~~~vdgiI~~~~~~~~~-~-~~-~~~~~~g--iPvV~~----~~~~~~~~~~~~V~~d~~~~g~~~~~ 113 (268)
T cd06306 43 LAKQIAQLEDCAAWGADAILLGAVSPDGL-N-EI-LQQVAAS--IPVIAL----VNDINSPDITAKVGVSWYEMGYQAGE 113 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCChhhH-H-HH-HHHHHCC--CCEEEe----ccCCCCcceeEEecCChHHHHHHHHH
Confidence 34455678888899999999987654322 2 33 3344444 677765 4444333322345544 33444444
Q ss_pred HHHH
Q 007819 244 LISN 247 (588)
Q Consensus 244 ~I~n 247 (588)
.+-+
T Consensus 114 ~l~~ 117 (268)
T cd06306 114 YLAQ 117 (268)
T ss_pred HHHH
Confidence 4333
No 103
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=61.16 E-value=11 Score=41.49 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=27.7
Q ss_pred eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 258 VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 258 vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
|+|+| +. .++ +.+++.|.++.+. ++|++|+|+||+..
T Consensus 235 ilIPE-~~---~~~----e~~~~~ik~~~~~-k~~~iIvVaEG~~~ 271 (403)
T PRK06555 235 VYLPE-MA---FDL----EAEAERLKAVMDE-VGNVNIFLSEGAGL 271 (403)
T ss_pred EEccC-CC---CCH----HHHHHHHHHHHHh-CCCEEEEEeCCCCc
Confidence 66666 53 343 5677888777766 89999999999954
No 104
>PRK14072 6-phosphofructokinase; Provisional
Probab=60.71 E-value=11 Score=41.69 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=27.0
Q ss_pred eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 258 VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 258 vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
++|+| +.. + .+.+++.|+++++. ++|++|+|+||+.+
T Consensus 213 iliPE-~~~---~----~~~~~~~i~~~~~~-~~~~ivvVaEG~~~ 249 (416)
T PRK14072 213 IYLPE-RPF---D----EEKFLADVRAIVKR-YGYCVVVVSEGIRD 249 (416)
T ss_pred EEccC-CCC---C----HHHHHHHHHHHHHh-CCCeEEEEecCccc
Confidence 66665 543 3 35677777777766 89999999999964
No 105
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=60.68 E-value=16 Score=39.06 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
.+.+..+++++.+++ +.|.+|-|||--.++.|..+|.. + .+++|.||-|
T Consensus 65 pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTT 113 (348)
T cd08175 65 ADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTA 113 (348)
T ss_pred CCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 467888889988888 99999999999888888888742 2 4799999998
No 106
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.67 E-value=32 Score=33.45 Aligned_cols=134 Identities=18% Similarity=0.300 Sum_probs=71.0
Q ss_pred CeEEEEEecCC---CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccc---
Q 007819 86 AIRVGIVFCGR---QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT--- 159 (588)
Q Consensus 86 ~~~IgIv~sGG---~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~--- 159 (588)
.++|||++||= +-.-+|-++-.+.. +. ..|.+..-|---..-+ +-.--||-+.+..-||. ++-|.
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltlla-i~--r~GA~~~cFAP~~~Q~--hViNHlTGE~m~EtRNV----LvEsARIa 71 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLA-IS--RSGAQAVCFAPDKQQV--HVINHLTGEAMPETRNV----LVESARIA 71 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHH-HH--hcCceeEEecCCchhh--hhhhhccccccchhhhH----HHHHHHHh
Confidence 36899999984 33446766666653 33 2344444443211110 00112333333333332 22222
Q ss_pred cCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHH----------------HHHHHHHhcCCCceEEEeeecccCCC
Q 007819 160 KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAA----------------YLAETFAEAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 160 R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~----------------~Lae~~~~~g~~i~VIgVPKTIDNDL 223 (588)
|.++.. +.......+|+|++-||.|...+-. .|++.|.+.|-.+-.++|--++=--|
T Consensus 72 RG~i~~-------l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki 144 (217)
T COG3155 72 RGEIRP-------LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKI 144 (217)
T ss_pred hccccc-------hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHH
Confidence 233322 3344566899999999999877643 45566666676777777755444444
Q ss_pred CCCCCCCCCCch
Q 007819 224 KNQFVETNVGFD 235 (588)
Q Consensus 224 ~~~~ie~S~GFd 235 (588)
.+.-+..|+|-|
T Consensus 145 ~g~~~~~TIGnD 156 (217)
T COG3155 145 FGFPLRLTIGND 156 (217)
T ss_pred cCCceeEEecCC
Confidence 444444455543
No 107
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=60.58 E-value=1.3e+02 Score=28.58 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=53.4
Q ss_pred EEEEEecCC-CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 88 RVGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 88 ~IgIv~sGG-~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||+++... ..+-...++.|+.+++.....+.++. +..+ . .++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------------------~~~~-~---~~~ 44 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVI--------------------------------LADS-Q---SDP 44 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEE--------------------------------EecC-C---CCH
Confidence 478888655 56777788888887775430010000 1111 1 123
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeeccc
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTID 220 (588)
+...++++.+...++|+++..+.+..... +.+.+.+.+ +++|.+=.+.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~ 93 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAP 93 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCC
Confidence 44556666777779999988877655432 444555454 78887755444
No 108
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=60.51 E-value=23 Score=38.45 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------CC------CceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------KC------PTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------g~------~i~VIgVPKTI 219 (588)
+.+...++++.+++.+.|.+|-|||--.++.|..++-..... +. .+++|.||-|-
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 557788899999999999999999999999886655422110 11 36889998554
No 109
>PRK13054 lipid kinase; Reviewed
Probab=59.98 E-value=20 Score=37.43 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHH-HHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
..+.+.....+.|.+|++|||||...+. .|.+. ..+.++++--||-==-||+.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa 99 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA 99 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH
Confidence 3444444556789999999999988764 23221 01334678888977778876
No 110
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=59.95 E-value=22 Score=38.68 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTI 219 (588)
+.+..+++++.++..+.|.+|-|||--.++.|..++-..... .-.+++|.||-|-
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 457889999999999999999999988888887765532110 1247889998543
No 111
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=59.51 E-value=20 Score=39.13 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHcCCc---EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 166 TEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
.+..+++.+.+.+.+.| .+|.|||--..+.|..+|-.+ .+| +++|.||-| + +..++.+.|--|+.+.
T Consensus 82 ~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~-~rG--ip~I~IPTT----l-la~vDs~~g~k~~vn~ 151 (369)
T cd08198 82 PDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATA-HRG--VRLIRIPTT----V-LAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCC----c-hhhhCCCeeeeecccC
Confidence 36788999999999998 999999988888887777642 344 899999999 2 2233356665555544
No 112
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=59.04 E-value=33 Score=37.64 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA 204 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~ 204 (588)
+.+..+++++.+++.+.|.+|-+||--+++.|..++-...
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~ 110 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAE 110 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhh
Confidence 5678899999999999999999999888888777665443
No 113
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=58.97 E-value=68 Score=33.81 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
..-+++||||+| -.+.|++-++..+-+ .+|..+++=|.-= -||=
T Consensus 11 P~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~---------------------vQG~---------- 54 (319)
T PF02601_consen 11 PKFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPAS---------------------VQGE---------- 54 (319)
T ss_pred CCCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEecc---------------------cccc----------
Confidence 355789999998 446666666666543 5666666544311 1221
Q ss_pred CCChHHHHHHHHHHHHcC----CcEEEEecCcccHHHHHHHHHHHHhc---CCCceEE-EeeecccC
Q 007819 163 IRTTEQVNAALTACKNLN----LDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVV-GVPVTLNG 221 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~----Id~LviIGGddS~~~A~~Lae~~~~~---g~~i~VI-gVPKTIDN 221 (588)
..++++-++++.+.+.+ +|.+|++=|-||...-..+.++-..+ .++++|| ||=-.+|.
T Consensus 55 -~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ 120 (319)
T PF02601_consen 55 -GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF 120 (319)
T ss_pred -chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc
Confidence 24566777777777665 99999999999988876655543322 4567765 44444443
No 114
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=58.14 E-value=2.5e+02 Score=29.84 Aligned_cols=163 Identities=12% Similarity=0.110 Sum_probs=91.8
Q ss_pred EEEecCCCcccH-HHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC-hH
Q 007819 90 GIVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT-TE 167 (588)
Q Consensus 90 gIv~sGG~aPG~-NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~-~e 167 (588)
-|++|||+.=-. ..-+..+++.++.. +..+.+.+ |.++.+.+- ..+|++.++.++..|=...++.-...+.. .+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i-~~v~~iri--~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~ 214 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAI-DHVKIVRF--HTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTA 214 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhC-CCccEEEE--eCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCH
Confidence 488999976544 35788999888753 23333333 344433222 34688888888877733234433322211 35
Q ss_pred HHHHHHHHHHHcCCcEEE---Ee-cCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLV---II-GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~Lv---iI-GGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae 243 (588)
+..++++.|++.|+.-++ ++ |=|++......|.+.+.+.|+..-.+....-..+ +--|++....+-+
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g---------~~~f~~~~~~~~~ 285 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPG---------TAHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC---------cccccCcHHHHHH
Confidence 677888999999987643 44 5567777778888888777754333333221211 2234455555556
Q ss_pred HHHHHHHHhhhccc-eEEecccc
Q 007819 244 LISNVCTDALSAEK-VILGEEVA 265 (588)
Q Consensus 244 ~I~nl~~dA~S~~k-vlI~Ee~~ 265 (588)
++..+..-....-. .++.|.-|
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCC
Confidence 66655443333222 45555333
No 115
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=58.07 E-value=65 Score=32.68 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.|||++..-..|-...++.|+-+.++.. +..+. +..+. .+++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL--GAEVI---------------------------------VQNAN---GDPA 42 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 3677777667777777888887776542 33322 11111 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
...++++.+...++|++++.+.+.+.. ..+.+.+.+.| ++||.+ |.+........++++|-
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~--~~~l~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d~ 103 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEAL--ASAVEKAADAG--IPVIAY----DRLILNSNVDYYVSFDN 103 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCcceEEEeCh
Confidence 456777888889999999988665421 12223444444 788864 55544332223566553
No 116
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=57.34 E-value=24 Score=37.97 Aligned_cols=53 Identities=28% Similarity=0.396 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHcC---CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 164 RTTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~---Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
++.+..+++.+.+.+.+ .|.+|.|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 64 k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-rg--ip~i~VPTTl 119 (344)
T cd08169 64 KTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLF-RG--IAFIRVPTTL 119 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-cC--CcEEEecCCc
Confidence 36678899999999877 899999999988888888776442 34 7999999984
No 117
>PRK13337 putative lipid kinase; Reviewed
Probab=57.18 E-value=19 Score=37.74 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
.+++++.+...+.|.||++|||||...+.. .+...+.++++--+|-===||+.
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~---gl~~~~~~~~lgiiP~GT~NdfA 98 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGDGTLNEVVN---GIAEKENRPKLGIIPVGTTNDFA 98 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCHHHHHHH---HHhhCCCCCcEEEECCcCHhHHH
Confidence 344444455677899999999999877653 22223445677778877777776
No 118
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=56.42 E-value=1.2e+02 Score=30.16 Aligned_cols=92 Identities=14% Similarity=-0.010 Sum_probs=53.8
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+|||++..-..|....++.|+-+.++.. +.++.-+ .... -.+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~~-~~~~~ 44 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL--GVSVDIQ---------------------------------AAPS-EGDQQ 44 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh--CCeEEEE---------------------------------ccCC-CCCHH
Confidence 4788887667777788888887777542 2222210 0000 01334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
....+++.+...++|++++.+.+.+...+ ..+.+.+++ ++||.+-..+
T Consensus 45 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 45 GQLSIAENMINKGYKGLLFSPISDVNLVP--AVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHHhCCCEEEECCCChHHhHH--HHHHHHHCC--CeEEEECCCC
Confidence 44567888888999999987655432222 234555554 7888764433
No 119
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=56.21 E-value=16 Score=38.40 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
.+.+.+++.|.+ .+|.++||||-.| .|..+|+|-+++.+.++-.|-=|.
T Consensus 197 ~~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~ 245 (281)
T PF02401_consen 197 QNRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETAD 245 (281)
T ss_dssp HHHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGG
T ss_pred HHHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCcc
Confidence 445555555544 7999999999999 677899999988875444443343
No 120
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.78 E-value=1.3e+02 Score=29.82 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=57.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.|||++..=..|-...++.|+.+.++.. +..++- ..+. .+++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~---------------------------------~~~~---~~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--GYSLLI---------------------------------ANSL---NDPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--CCEEEE---------------------------------EeCC---CChH
Confidence 3788888777888888888888877643 333321 1111 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeeccc
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTID 220 (588)
...++++.+...++||+++.+++... ..+.+.+.+.+ ++||.+=...+
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~~~---~~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDERD---PELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc---HHHHHHHHhCC--CCEEEEecccC
Confidence 55667888999999999999876432 22334444444 67777654443
No 121
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=55.47 E-value=44 Score=33.11 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=67.8
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC---------CeEecCHhhHhchhhcCCcccccccc
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
+++++||+.|-.... ..+ ......+++.=+|..=|++. ++=-++++..+.+... |..+.--..
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~--~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~p~ 72 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKL--WKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEIIHFPD 72 (208)
T ss_pred CEEEECCcCCcchhH-----HHh--hccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeEEECCC
Confidence 367888988854443 112 23456789999999888774 3334556666666655 432332222
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEecCccc-----HHHHHHHHHH
Q 007819 161 DQIRTTEQVNAALTACKNLNLDGLVIIGGVTS-----NTDAAYLAET 202 (588)
Q Consensus 161 ~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS-----~~~A~~Lae~ 202 (588)
. ++.-+++++++.+.+++-+-++++|+-|. +.+...|..+
T Consensus 73 ~--KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~ 117 (208)
T cd07995 73 E--KDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKY 117 (208)
T ss_pred C--CCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHH
Confidence 1 34568999999999999999999999775 4455555554
No 122
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=54.67 E-value=24 Score=38.66 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHcCCc---EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 166 TEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
.+...++.+.+.+.+.| .+|.|||--+.+.|..+|-.+ .+| ++.|.||-|
T Consensus 94 ~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~-~rg--ip~I~IPTT 146 (389)
T PRK06203 94 PALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATA-HRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHh-cCC--CCEEEEcCC
Confidence 36789999999999998 999999988888887776432 234 799999999
No 123
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=54.60 E-value=21 Score=37.13 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHcCCc---EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 164 RTTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
++-+.++++.+.+.+.+++ .+|.|||--..+-|-..|-.+. +| |+.|.||-|+-.= ++.|+|--||+++
T Consensus 10 Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~-RG--i~~i~vPTTLLa~-----vDssiGgK~~vN~ 81 (260)
T PF01761_consen 10 KSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYM-RG--IPFIQVPTTLLAQ-----VDSSIGGKTGVNF 81 (260)
T ss_dssp SSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBT-T----EEEEEE-SHHHH-----HTTTSSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHc-cC--CceEeccccHHHH-----HhcccCCCeeeeC
Confidence 4668899999999999995 9999999988888888877654 45 8999999987532 3367776666653
No 124
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.29 E-value=13 Score=39.30 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
+.|.+|++|||||+-.|+.... +.+++|+||.. . -++||=|..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~--G~lGFL~~~ 99 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------G--GHLGFLTHP 99 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------C--CcceEecCc
Confidence 6899999999999988776542 34689999984 1 378998864
No 125
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=54.05 E-value=15 Score=37.98 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=30.3
Q ss_pred HHHHcCCcEEEEecCcccHHHHHH-HHHHHHhcCCCceEEE-eeecccCCCC
Q 007819 175 ACKNLNLDGLVIIGGVTSNTDAAY-LAETFAEAKCPTKVVG-VPVTLNGDLK 224 (588)
Q Consensus 175 ~l~~l~Id~LviIGGddS~~~A~~-Lae~~~~~g~~i~VIg-VPKTIDNDL~ 224 (588)
...+.+.|.+|++|||||...+.. |.+ .. +.+.+| +|.==-||+.
T Consensus 52 ~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 52 EARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 344567999999999999887653 422 12 244566 8866666665
No 126
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=53.05 E-value=12 Score=33.90 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=32.4
Q ss_pred CcEEEEecCcccHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 181 LDGLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 181 Id~LviIGGddS~~~A~~Lae~~~~~g~--~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
.|.+|++|||||...+. ..+.+.+. ++++.-+|.==-||+. .++|+.+-...
T Consensus 55 ~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a-----r~lg~~~~~~~ 108 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA-----RSLGIPSDPEA 108 (130)
T ss_dssp -SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH-----HHTT--SSHHH
T ss_pred ccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH-----HHcCCCCCcHH
Confidence 48999999999987653 33333332 4589999987778876 57777665555
No 127
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=52.59 E-value=1.7e+02 Score=28.66 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=52.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
||++..+-..|....++.|+-++++.. +..+.-+. +. .+.+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~---~~~~~ 43 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAA--GYQLLLGN---------------------------------TG---YSPER 43 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHc--CCEEEEec---------------------------------CC---CCchh
Confidence 688887777888888888888777642 33332111 11 12233
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
..++++.+...++||+++.+-+.+.. .+ +.+.+. +++||.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~-~~~~~~--~ipvv~~ 84 (268)
T cd01575 44 EEELLRTLLSRRPAGLILTGLEHTER---TR-QLLRAA--GIPVVEI 84 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHH---HH-HHHHhc--CCCEEEE
Confidence 45677888889999999998775522 12 223333 4788877
No 128
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.37 E-value=11 Score=39.24 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
+.|.+|++|||||+-.|+... ..+|+||-. -++||=|..
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~------------G~lGFL~~~ 90 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM------------GGLGFLTEI 90 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC------------CCCccCccc
Confidence 789999999999998776542 248999852 378997753
No 129
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.29 E-value=76 Score=31.17 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
+...+.++.+...++|++++.+.+.+... .+ +.+.+.| ++||.+ |++.....+ .++|+|
T Consensus 42 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~--~~-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 100 (268)
T cd06289 42 ERQEQLLSTMLEHGVAGIILCPAAGTSPD--LL-KRLAESG--IPVVLV----AREVAGAPF-DYVGPD 100 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCccHH--HH-HHHHhcC--CCEEEE----eccCCCCCC-CEEeec
Confidence 44556778888999999999987654322 22 3344444 688865 444333222 456666
No 130
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=51.97 E-value=1e+02 Score=34.47 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
...+++||||||=- -++|+-++..++.+.|..+|+-+.-=. ||=
T Consensus 132 P~~p~~IGVITS~t-----gAairDIl~~~~rR~P~~~viv~pt~V---------------------QG~---------- 175 (440)
T COG1570 132 PFFPKKIGVITSPT-----GAALRDILHTLSRRFPSVEVIVYPTLV---------------------QGE---------- 175 (440)
T ss_pred CCCCCeEEEEcCCc-----hHHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCC----------
Confidence 35579999999832 368888999999899988887544211 221
Q ss_pred CCChHHHHHHHHHHHHcC-CcEEEEecCcccHHHHHHHHHHHHhc---CCCceEEE
Q 007819 163 IRTTEQVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVVG 214 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~-Id~LviIGGddS~~~A~~Lae~~~~~---g~~i~VIg 214 (588)
...+++-++++.+.+++ +|.|||.=|-||...-..+.|+...+ .++|+||.
T Consensus 176 -~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 176 -GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred -CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 23466777888888887 99999999999999988887764433 45677764
No 131
>PRK13055 putative lipid kinase; Reviewed
Probab=51.96 E-value=26 Score=37.42 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+++.+...+.|.||++|||||+..+.. .+...+..+++--||.==-||+.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGDGTl~evvn---gl~~~~~~~~LgiiP~GTgNdfA 100 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGDGTINEVVN---GIAPLEKRPKMAIIPAGTTNDYA 100 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCCCHHHHHHH---HHhhcCCCCcEEEECCCchhHHH
Confidence 34444455678899999999999876542 22222334567778977778876
No 132
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=51.75 E-value=1.9e+02 Score=26.92 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=67.9
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
+.+|.+.+.||+.=.+..-+.... ++ ..|.+|+-. | ..++.+.+-.--..-..++++-|-....+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--lr--~~G~eVi~L-----G------~~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--LT--EAGFEVINL-----G------VMTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--HH--HCCCEEEEC-----C------CCCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 457777788887654444333332 22 347777622 1 24455444333333344566655444456
Q ss_pred hHHHHHHHHHHHHcCC-cEEEEecCcccHH--HHHHHHHHHHhcCCCceEEEeeec
Q 007819 166 TEQVNAALTACKNLNL-DGLVIIGGVTSNT--DAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~I-d~LviIGGddS~~--~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
...+...++.|++.+. +-.|++||.-+.. ......+.+++.| +..|.-|.|
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G--~~~vf~~~~ 121 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG--FDRVFPPGT 121 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC--CCEEECcCC
Confidence 7788999999999977 6678999986432 1444555666666 455555544
No 133
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=51.53 E-value=21 Score=40.10 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=29.2
Q ss_pred cceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCc
Q 007819 256 EKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIES 304 (588)
Q Consensus 256 ~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ 304 (588)
.-|+|+| . ..+| +.+++.|++|++. ++|+||+|+||+.+.
T Consensus 278 d~vlIPE-~---~f~l----~~ll~~l~~r~~~-~~~~VIVVaEGa~~~ 317 (459)
T PTZ00286 278 NVCLIPE-F---DIPL----EGVLEYIEQRLQK-KGHCVIVVAEGAGQS 317 (459)
T ss_pred CEEEeCC-C---CCCH----HHHHHHHHHHHhc-CCcEEEEEecCCccc
Confidence 3477776 4 3555 4677777888765 889999999999753
No 134
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=50.56 E-value=3.4e+02 Score=28.87 Aligned_cols=107 Identities=13% Similarity=-0.006 Sum_probs=65.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|+++......|=...+..|+-++++.+ +.++. + .+.+ .. +
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--G~~v~-~-------------------------------~~~~--~~-d 65 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKEL--GVDVT-Y-------------------------------DGPT--EP-S 65 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCEEE-E-------------------------------ECCC--CC-C
Confidence 458999999888999999999998887643 33332 0 0111 11 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 237 (588)
.+.....++.+...++|++++..-|.. .-...| +.+.+.| |+||. +|.|+........+|.++.
T Consensus 66 ~~~q~~~i~~li~~~vdgIiv~~~d~~-al~~~l-~~a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~~ 129 (336)
T PRK15408 66 VSGQVQLINNFVNQGYNAIIVSAVSPD-GLCPAL-KRAMQRG--VKVLT----WDSDTKPECRSYYINQGTP 129 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHH-HHHHHCC--CeEEE----eCCCCCCccceEEEecCCH
Confidence 233346788899999999999865533 222333 3344455 67776 6666543332244565443
No 135
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=50.14 E-value=16 Score=38.16 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=43.8
Q ss_pred cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q 007819 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALS 254 (588)
Q Consensus 179 l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S 254 (588)
...+.++++|||||+-.|+.... ..+++|+||= . -++||=|-.. .+.+..+..+...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin---------~---G~lGFLt~~~--~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN---------L---GHLGFLTDFE--PDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe---------C---CCcccccccC--HHHHHHHHHHHhc
Confidence 57899999999999999887754 3358999985 2 4899988777 5666666666655
No 136
>PRK13057 putative lipid kinase; Reviewed
Probab=50.13 E-value=37 Score=35.21 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
+.+...+++. ...+.|.+|++|||||...+.. .+.. .++++-.+|.===||+. .++|..
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~--~~~~lgiiP~GT~Ndfa-----r~Lg~~ 95 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVE--TGLPLGILPLGTANDLA-----RTLGIP 95 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhc--CCCcEEEECCCCccHHH-----HHcCCC
Confidence 3444455544 3467899999999999887642 2222 25788889977778886 455554
No 137
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.09 E-value=1.9e+02 Score=29.09 Aligned_cols=87 Identities=25% Similarity=0.168 Sum_probs=54.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
++||++...-..|....++.|+.+.+++. +..++ +..+. .++
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~--gy~~~---------------------------------~~~~~---~~~ 42 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAI--GWNLR---------------------------------ILDGR---GSE 42 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHc--CcEEE---------------------------------EECCC---CCH
Confidence 47899988888888888999998887643 22221 11111 134
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++..++++.+...++|++|+.+.+-.... ..+ +.+.+.+ ++||.+
T Consensus 43 ~~~~~~i~~l~~~~vdgiil~~~~~~~~~-~~~-~~~~~~~--iPvV~~ 87 (280)
T cd06315 43 AGQAAALNQAIALKPDGIVLGGVDAAELQ-AEL-ELAQKAG--IPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHH-HHH-HHHHHCC--CCEEEe
Confidence 45567889999999999999986533211 222 2233344 666654
No 138
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=48.37 E-value=1.7e+02 Score=28.83 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=67.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+||++...-.-|=...++.|+-++++.. +..+. +..+. .+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLR---------------------------------VYDAG---GDDA 42 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 4777777666677777777777776542 22221 11111 1234
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n 247 (588)
.....++.+...++|++|+..++.... ...+ +.+.++| ++||.+ |++.....+ .+++.|-. +....+...
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~~~~~~-~~~i-~~~~~~~--ipvV~~----~~~~~~~~~-~~V~~d~~-~~g~~~~~~ 112 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVL-KPWV-KRALDAG--IPVVAF----DVDSDNPKV-NNTTQDDY-SLARLSLDQ 112 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhh-HHHH-HHHHHcC--CCEEEe----cCCCCCCcc-ceeeechH-HHHHHHHHH
Confidence 445667777778999999998764322 2223 3344455 677765 444432221 45666532 233333333
Q ss_pred HHHHhhhccceEEe
Q 007819 248 VCTDALSAEKVILG 261 (588)
Q Consensus 248 l~~dA~S~~kvlI~ 261 (588)
+......+.++.+.
T Consensus 113 l~~~~~g~~~i~~i 126 (273)
T cd06305 113 LVKDLGGKGNVGYV 126 (273)
T ss_pred HHHHhCCCCCEEEE
Confidence 33333456665544
No 139
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=48.15 E-value=82 Score=30.99 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch--hHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD--TICKVNSQ 243 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd--TA~k~~ae 243 (588)
++....+++.+...++|++++.+.+.+.. ..+.+.+. +++||.+ |++...+.+ .++++| .+.+..++
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~--~ipvV~~----~~~~~~~~~-~~v~~d~~~~~~~~~~ 109 (268)
T cd06298 41 KEKELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRS--PTPVVLA----GSVDEDNEL-PSVNIDYKKAAFEATE 109 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcC--CCCEEEE----ccccCCCCC-CEEEECcHHHHHHHHH
Confidence 34455667778889999999998654422 22333334 4677776 444333221 355555 45555544
Q ss_pred HHHHHHHHhhhccceEEe
Q 007819 244 LISNVCTDALSAEKVILG 261 (588)
Q Consensus 244 ~I~nl~~dA~S~~kvlI~ 261 (588)
.+.+ ..++++.++
T Consensus 110 ~l~~-----~g~~~i~~l 122 (268)
T cd06298 110 LLIK-----NGHKKIAFI 122 (268)
T ss_pred HHHH-----cCCceEEEE
Confidence 4433 245564443
No 140
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=48.13 E-value=1e+02 Score=34.88 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcc--ccccccCCCCChHHHHHHHHHHHHcCCcEE
Q 007819 107 GLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD--MLGRTKDQIRTTEQVNAALTACKNLNLDGL 184 (588)
Q Consensus 107 gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~--~lgS~R~k~~~~e~~~~i~~~l~~l~Id~L 184 (588)
.+-+.+.....-.+++-|.|-..| +++-..+-++.+..+....|.. +.-+.+ +.+...+++.+...+.|++
T Consensus 100 ~~~~~~~~~~~~kr~lvIvNP~SG--kg~a~k~~~~~v~~~L~~~gi~~~v~~T~~-----~ghA~~la~~~~~~~~D~V 172 (481)
T PLN02958 100 KLRDYLDSLGRPKRLLVFVNPFGG--KKSASKIFFDVVKPLLEDADIQLTIQETKY-----QLHAKEVVRTMDLSKYDGI 172 (481)
T ss_pred HHHHHHhhccCCcEEEEEEcCCCC--CcchhHHHHHHHHHHHHHcCCeEEEEeccC-----ccHHHHHHHHhhhcCCCEE
Confidence 333444322233467777776666 3332233233455444445532 222222 2334445555556678999
Q ss_pred EEecCcccHHHHH-HHHHHH-HhcCCCceEEEeeecccCCCCC
Q 007819 185 VIIGGVTSNTDAA-YLAETF-AEAKCPTKVVGVPVTLNGDLKN 225 (588)
Q Consensus 185 viIGGddS~~~A~-~Lae~~-~~~g~~i~VIgVPKTIDNDL~~ 225 (588)
|++|||||...+. -|.+.- .+.+.++++--||.==-||+.-
T Consensus 173 V~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 173 VCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred EEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 9999999977643 232210 0014468888899888888874
No 141
>PLN02884 6-phosphofructokinase
Probab=47.98 E-value=23 Score=39.27 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=28.4
Q ss_pred cceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 256 EKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 256 ~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
.-++|+| +.. ++. -.+.+++.|.+|.+ +++|++|+|+||+-.
T Consensus 245 d~ilIPE-~~f---~~~-~~~~~~~~i~~~~~-~k~~~iIVVAEG~g~ 286 (411)
T PLN02884 245 DICLIPE-VPF---TLD-GPNGVLRHLEHLIE-TKGSAVVCVAEGAGQ 286 (411)
T ss_pred CEEEeCC-CCC---Ccc-cHHHHHHHHHHHHh-cCCcEEEEEeccccc
Confidence 3466666 543 221 02467777887777 799999999999843
No 142
>PRK10586 putative oxidoreductase; Provisional
Probab=47.86 E-value=37 Score=36.85 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF 227 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 227 (588)
+.++.+++.+.++ .+.|.+|-|||--+++.|..++.. ..+++|.||-|--+|-..+.
T Consensus 72 ~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 72 SESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred CHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccC
Confidence 4566777776665 589999999999999999988863 25799999988888765544
No 143
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=47.42 E-value=1.2e+02 Score=29.90 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=61.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.|||++..-..|-.+.++.|+.+++++. +..+.-+. + . .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~--------------------------------~---~-~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--GYSTIIGN--------------------------------S---D-ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--CCEEEEEe--------------------------------C---C-CCHH
Confidence 3788887767788888888888877643 23332111 0 0 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.....++.+...++||+++.+.+.... . .+.+.++| ++||. +|++.....+ .+++.|-
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~--ipvV~----~~~~~~~~~~-~~v~~d~ 100 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRG--IPVVF----VDREITGSPI-PFVTSDP 100 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCC--CCEEE----EecccCCCCC-CEEEECc
Confidence 556778889999999999998765432 2 34445555 67774 4555543221 4566664
No 144
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=47.16 E-value=72 Score=35.54 Aligned_cols=159 Identities=17% Similarity=0.246 Sum_probs=84.0
Q ss_pred CChHHHhhhCCcccCCCceeEecCcc--CCCccccccCCCCeEEEEEecCCCcccHHH-HH-------HHHHHH--HHhc
Q 007819 48 ADTHSISRSFPHTYGQPLAHFLRATA--KVPDAQIITEHPAIRVGIVFCGRQSPGGHN-VV-------WGLYDA--LKLH 115 (588)
Q Consensus 48 ~~~~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~IgIv~sGG~aPG~Nn-vI-------~gl~~~--l~~~ 115 (588)
.....+..+...+.|.+...-++-.. .++-+....+-+..+|++|++||..|-+|- -| ||.++- +..
T Consensus 183 ~a~Rav~mllkkl~ge~f~te~pmP~fd~v~p~p~~kdL~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~- 261 (431)
T TIGR01918 183 GSERAVDMLVKKLKGEEFQTEYPMPVFDRVEPAAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDR- 261 (431)
T ss_pred cHHHHHHHHHHhccCCcccccCCCCCCCcCCCCccCCchhhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccc-
Confidence 33456666666666655443332110 001011122345679999999999997773 22 111110 000
Q ss_pred CCCCEEEEEcCchhhhhcC----CeEecCHhhHhch-------------hhcCCccccccccCCCCChHHHHHHHHHHHH
Q 007819 116 NPKSTLLGFLGGSEGLFAQ----KTLEVTKEILSTY-------------KNQGGYDMLGRTKDQIRTTEQVNAALTACKN 178 (588)
Q Consensus 116 ~~~~~v~Gf~~G~~GL~~~----~~~eLt~~~v~~~-------------~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~ 178 (588)
-...+..-.++||+--.-+ .+++|+. +..+ ..+-|. |+.+.. .++.-..+.+.|++
T Consensus 262 l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLekEG~IG~L~~~fyst~G~---gt~~~~--a~~~g~eIa~~Lk~ 334 (431)
T TIGR01918 262 LEGGVYETAHGGFDPAYANADPDRVVPVDV--LRDYEKEGKIGELHEYFYSTVGN---GTTVAE--SKQFAKEFVVELKQ 334 (431)
T ss_pred cCccceEEeccccChHHHhcCCCeeeeHHH--HHHHHHcCCcccccCeeEEcCCC---CchHHH--HHHHHHHHHHHHHH
Confidence 0112333345566554322 2344432 2222 222221 112211 12455778999999
Q ss_pred cCCcEEEEecCcccHH-HHHHHHHHHHhcCCCceEEEee
Q 007819 179 LNLDGLVIIGGVTSNT-DAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 179 l~Id~LviIGGddS~~-~A~~Lae~~~~~g~~i~VIgVP 216 (588)
-++|+++....-||-+ .++..++++.+.| |+||++=
T Consensus 335 dgVDAVILTstCgtC~r~~a~m~keiE~~G--iPvv~~~ 371 (431)
T TIGR01918 335 GGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHMC 371 (431)
T ss_pred cCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEEe
Confidence 9999999998888755 4677888888877 5666653
No 145
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=46.89 E-value=39 Score=34.85 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=60.4
Q ss_pred EEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccc--cccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHH----
Q 007819 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNT---- 194 (588)
Q Consensus 121 v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lg--S~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~---- 194 (588)
-+-+-+|..| ....-|......+++.+|...+- ++|+. +..+++..+..+..+||+.+++++||-...
T Consensus 31 ~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~ 104 (274)
T cd00537 31 FVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDR--NRIELQSILLGAHALGIRNILALRGDPPKGGDQP 104 (274)
T ss_pred EEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCC--CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCC
Confidence 4445555554 22233555667778888765443 34444 458899999999999999999999886543
Q ss_pred --------HHHHHHHHHHhc---CCCceEEEee
Q 007819 195 --------DAAYLAETFAEA---KCPTKVVGVP 216 (588)
Q Consensus 195 --------~A~~Lae~~~~~---g~~i~VIgVP 216 (588)
.|..|-+..++. +..+.|.+-|
T Consensus 105 ~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 105 GAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 478888887764 3445566666
No 146
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=46.77 E-value=45 Score=40.42 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia~ 560 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMWL 560 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 5578999999999999999999999999999888763
No 147
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=46.74 E-value=3.4e+02 Score=28.50 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=61.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+||++..+-..|--+.++.|+-++++.. +..++ +.++. .
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--g~~l~---------------------------------i~~~~---~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVF---------------------------------VQSAN---G 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---C
Confidence 4689999999999999999999999888643 33332 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+++...+.++.+...++|++++.+.+.+.. ...+ +.+.+.+ ++||.+-..+
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~-~~~l-~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPYNGQVL-SNVI-KEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhH-HHHH-HHHHHCC--CeEEEECCCC
Confidence 345556778889999999999997653211 1223 3344444 7888874444
No 148
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=46.20 E-value=36 Score=36.16 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHc-CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCC
Q 007819 167 EQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN 225 (588)
Q Consensus 167 e~~~~i~~~l~~l-~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 225 (588)
+.++++.+.+++. +.|.+|-|||--.++.|..+|.. + .+++|.||-|.-+|-..
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGIA 115 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCccc
Confidence 3455555556655 59999999999999888888762 3 47999999998775543
No 149
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=45.97 E-value=2.8e+02 Score=28.82 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g 207 (588)
+++..+.+++.++++++|+++. +-++.....+.+++.+.+.|
T Consensus 54 ~~~~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g 95 (326)
T PRK12767 54 DPNYIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIG 95 (326)
T ss_pred ChhHHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcC
Confidence 3456788899999999997654 56666666777777777665
No 150
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=45.13 E-value=2.8e+02 Score=28.00 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=77.3
Q ss_pred ccCCCceeEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhc------
Q 007819 60 TYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA------ 133 (588)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~------ 133 (588)
+...|.+-|.++.- ..-....|+||=+--+++=+-.+...+...+.+. .-.-|-|+-.|.+....
T Consensus 26 i~~~P~~Lf~~Gn~--------~ll~~~~iaIvGsR~~s~~~~~~a~~l~~~l~~~-g~~IVSG~A~GiD~~ah~~al~~ 96 (220)
T TIGR00732 26 IYDPPPVLFYKGDL--------PLLSQRKVAIVGTRRPTKYGERWTRKLAEELAKN-GVTIVSGLALGIDGIAHKAALKV 96 (220)
T ss_pred CCCCCceEEEECCc--------ccccCCeEEEEcCCCCCHHHHHHHHHHHHHHHhC-CCEEEcCchhhHHHHHHHHHHHc
Confidence 34578889988862 1122357888777777777777777777766432 12233344445444211
Q ss_pred -CCeEec------------CHhhHhchhhcCCccccccccCCCCC---h---HHHHHHHHHHHHcCCcEEEEecC---cc
Q 007819 134 -QKTLEV------------TKEILSTYKNQGGYDMLGRTKDQIRT---T---EQVNAALTACKNLNLDGLVIIGG---VT 191 (588)
Q Consensus 134 -~~~~eL------------t~~~v~~~~n~GGs~~lgS~R~k~~~---~---e~~~~i~~~l~~l~Id~LviIGG---dd 191 (588)
+..+-+ +.+..+.+...||. ++ | .+.+.+ . -.+.+++..+- +++|+++. .|
T Consensus 97 ~g~tIaVl~~gld~~yp~~n~~l~~~i~~~ggl-li-S-e~p~~~~~~~~~f~~RNriia~ls----~~vivve~~~~sG 169 (220)
T TIGR00732 97 NGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGL-LL-S-EYPPDTKPIKYNFPKRNRIISGLS----RAVLVVEAPLKSG 169 (220)
T ss_pred CCCEEEEECCCCccCCchhhHHHHHHHHHcCCE-EE-E-ecCCCCCCCcccHHHHHHHHHHhc----CEEEEEECCCCCc
Confidence 122211 22344556667876 54 2 222211 1 23444444333 77888887 46
Q ss_pred cHHHHHHHHHHHHhcCCCceEEEeeecccC
Q 007819 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (588)
Q Consensus 192 S~~~A~~Lae~~~~~g~~i~VIgVPKTIDN 221 (588)
|+.+|. ++.+.| -+|..+|..|++
T Consensus 170 tl~ta~----~A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 170 ALITAR----YALEQG--REVFAYPGDLNS 193 (220)
T ss_pred hHHHHH----HHHHhC--CcEEEEcCCCCC
Confidence 665554 334345 589999988875
No 151
>PRK13059 putative lipid kinase; Reviewed
Probab=44.98 E-value=42 Score=35.06 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=35.7
Q ss_pred HcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 178 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 178 ~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
+.+.|.+|++|||||...+. ..+.+.+.++++--||.==-||+. .++|..
T Consensus 54 ~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA-----r~lgi~ 103 (295)
T PRK13059 54 DESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA-----KFLGMP 103 (295)
T ss_pred hcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH-----HHhCCC
Confidence 46789999999999987654 333334556788889977778876 455554
No 152
>PRK05670 anthranilate synthase component II; Provisional
Probab=44.85 E-value=36 Score=33.06 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=32.0
Q ss_pred HHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 177 KNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 177 ~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
++++.|+||+-||.++-..+....+.+++...+++|.| .|+|++-.+...
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLG---------------IClG~Qlla~al 89 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILG---------------VCLGHQAIGEAF 89 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEE---------------ECHHHHHHHHHh
Confidence 56679999999999997665444333322112355655 489988666553
No 153
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=44.67 E-value=1.2e+02 Score=32.84 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEcC-----chhhhh------cCCe-E--ecCHh-hHhch--hhcCCccccc-cccCCC
Q 007819 102 HNVVWGLYDALKLHNPKSTLLGFLG-----GSEGLF------AQKT-L--EVTKE-ILSTY--KNQGGYDMLG-RTKDQI 163 (588)
Q Consensus 102 NnvI~gl~~~l~~~~~~~~v~Gf~~-----G~~GL~------~~~~-~--eLt~~-~v~~~--~n~GGs~~lg-S~R~k~ 163 (588)
-+++..+.+.++...+...||+..- |.+|-. +.++ + +.+.. +.... ...|+-.+|. .-+..+
T Consensus 183 ~a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD~aI~vDv~~~~d~~~~~~~~lg~Gp~i~~~D~~~i 262 (350)
T TIGR03107 183 VLMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGEGTLLRFFDPGHI 262 (350)
T ss_pred HHHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCCCCEEEEEecCCcCCCCCCCccccCCCceEEEecCCCC
Confidence 3456666666665445677887552 555532 3332 2 33321 11111 2234333562 224556
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
-++.-.+.+.+..++++|..=+++-|-||-.+|..++ ..|+.+-+|+||
T Consensus 263 ~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~----~~Gvpt~~i~ip 311 (350)
T TIGR03107 263 MLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLK----NSGVPSTTIGVC 311 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHh----CCCCcEEEEccC
Confidence 6788899999999999999877665446655555554 369999999999
No 154
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=44.55 E-value=1.1e+02 Score=34.77 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+.+.+++.|+++++|++| +|+.+. .++-+++.|.+.| ++++|-.
T Consensus 57 d~~~l~~~a~~~~id~Vi-~g~E~~--l~~glad~l~~~G--i~v~Gps 100 (486)
T PRK05784 57 SPEEVKKVAKEVNPDLVV-IGPEEP--LFAGVADVLREEG--FPVFGAS 100 (486)
T ss_pred CHHHHHHHHHHhCCCEEE-ECCchH--HHHHHHHHHHhCC--CCEECCc
Confidence 456788999999999655 577653 3345667776655 6777744
No 155
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=44.42 E-value=1.8e+02 Score=29.88 Aligned_cols=161 Identities=12% Similarity=0.134 Sum_probs=91.6
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
..||||..--.-|=--.++.|+-+.+++. |..+ ++..+.. ++
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~--Gy~l---------------------------------~l~~t~~---~~ 43 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREH--GYQL---------------------------------LLCNTGD---DE 43 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHT--TCEE---------------------------------EEEEETT---TH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHc--CCEE---------------------------------EEecCCC---ch
Confidence 46888888888888888888888877643 3332 2222222 22
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 246 (588)
+ .++.++.|.+.++||+|+.+-..+...-..+.+ . +++||.+=.+.+++.. . .++.+|- .+...++..
T Consensus 44 ~-~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~--~--~~V~~D~-~~a~~~a~~ 111 (279)
T PF00532_consen 44 E-KEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEG--V--PSVYIDN-YEAGYEATE 111 (279)
T ss_dssp H-HHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCT--S--CEEEEEH-HHHHHHHHH
T ss_pred H-HHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCccc--C--CEEEEcc-hHHHHHHHH
Confidence 2 338899999999999999976665333333332 2 4899998777777621 1 4666662 222224444
Q ss_pred HHHHHhhhccc-eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 247 NVCTDALSAEK-VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 247 nl~~dA~S~~k-vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
.|.. ..|+| +.++-. ....+ ...+....-...-.+.|....-.+|.++-..
T Consensus 112 ~Li~--~Gh~~~I~~i~~--~~~~~--~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~ 163 (279)
T PF00532_consen 112 YLIK--KGHRRPIAFIGG--PEDSS--TSRERLQGYRDALKEAGLPIDEEWIFEGDFD 163 (279)
T ss_dssp HHHH--TTCCSTEEEEEE--STTTH--HHHHHHHHHHHHHHHTTSCEEEEEEEESSSS
T ss_pred HHHh--cccCCeEEEEec--CcchH--HHHHHHHHHHHHHHHcCCCCCcccccccCCC
Confidence 4442 34677 443321 11111 1123333333333345666777778777654
No 156
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=44.27 E-value=49 Score=34.43 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHH-HHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+.+.+.+.+.|.+|++|||||...+. -|.+. ..+..+++.-||.==-||+.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 3344444567789999999999987755 33221 11234567889988888886
No 157
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=44.17 E-value=48 Score=37.96 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcC---CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~---Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++.+.+.+.+ -|.+|-|||--+++.|..+|-.+. +| +++|.||-|+
T Consensus 251 sl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~-rG--i~~i~vPTTl 305 (542)
T PRK14021 251 TIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWM-RG--IRYVNCPTSL 305 (542)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHH-cC--CCEEEeCChH
Confidence 4567788888888884 899999999988888888876432 34 8999999986
No 158
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=43.87 E-value=71 Score=29.34 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=58.1
Q ss_pred CCEEEEEcCchhhhhcC-Ce---------EecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEe
Q 007819 118 KSTLLGFLGGSEGLFAQ-KT---------LEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187 (588)
Q Consensus 118 ~~~v~Gf~~G~~GL~~~-~~---------~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviI 187 (588)
..-+++.=+|..=+.+. .+ =-++++....|++.|-. ++-.. . ++.-+++++++.+.+++.+-++++
T Consensus 16 ~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~-~~~~p-~--kD~TD~e~Al~~~~~~~~~~i~v~ 91 (123)
T PF04263_consen 16 ADFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVE-IIHFP-E--KDYTDLEKALEYAIEQGPDEIIVL 91 (123)
T ss_dssp TSEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTE-EEEE--S--TTS-HHHHHHHHHHHTTTSEEEEE
T ss_pred CCEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccc-eeccc-c--cccCHHHHHHHHHHHCCCCEEEEE
Confidence 34567777777777665 32 24566677777777544 55433 3 345689999999999999999999
Q ss_pred cCcc-----cHHHHHHHHHHHHhcCCCc
Q 007819 188 GGVT-----SNTDAAYLAETFAEAKCPT 210 (588)
Q Consensus 188 GGdd-----S~~~A~~Lae~~~~~g~~i 210 (588)
|+-| ++.+...|.++. +.++++
T Consensus 92 Ga~GgR~DH~lanl~~l~~~~-~~~~~i 118 (123)
T PF04263_consen 92 GALGGRFDHTLANLNLLYKYK-KRGIKI 118 (123)
T ss_dssp S-SSSSHHHHHHHHHHHHHHH-TTTSEE
T ss_pred ecCCCcHHHHHHHHHHHHHHH-HcCCeE
Confidence 9977 566666666654 445433
No 159
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=43.83 E-value=54 Score=31.64 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+.+++.++.+++.+|.+.|- ++.|.=.... ....+|||||-.
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-----aa~Lpgvva~-~t~~PVIgvP~~ 85 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-----AAHLPGMVAA-LTPLPVIGVPVP 85 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-----cchhHHHHHh-ccCCCEEEecCC
Confidence 477889999999999998766665554 2333333222 346899999953
No 160
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=42.88 E-value=28 Score=35.96 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+...++.+.++..+.|.+|-+||--.++.|...|... +++.|.||-+..+|=.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~-----~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL-----GIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH-----T--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc-----CCCEEEeccccccccc
Confidence 556778888888888999999999987777777666543 4899999999999864
No 161
>PLN02564 6-phosphofructokinase
Probab=42.87 E-value=30 Score=39.17 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=28.4
Q ss_pred cceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCc
Q 007819 256 EKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI 302 (588)
Q Consensus 256 ~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~ 302 (588)
.-|+|+| +. .++.+ ...+++.|.+|++. ++|+||+|+||+-
T Consensus 278 d~iLIPE-~p---f~le~-~~~ll~~i~~rl~~-~~~~VIVVAEGag 318 (484)
T PLN02564 278 DCCLIPE-SP---FYLEG-KGGLFEFIEKRLKE-NGHMVIVVAEGAG 318 (484)
T ss_pred CEEEeCC-CC---CCcch-HHHHHHHHHHHHhc-cCCEEEEEeCCCc
Confidence 3477776 43 34432 22566778888877 6899999999983
No 162
>PRK07952 DNA replication protein DnaC; Validated
Probab=42.46 E-value=3.9e+02 Score=27.42 Aligned_cols=103 Identities=13% Similarity=0.224 Sum_probs=52.2
Q ss_pred CcEEEEecCcccHHH--HHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhccce
Q 007819 181 LDGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKV 258 (588)
Q Consensus 181 Id~LviIGGddS~~~--A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kv 258 (588)
..++++.|+.|+=.+ |+.++.++.++|..+.++-++.-+ ..+.. ++ ..+-....+.+.. . +..-+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~-~~l~~-----~~--~~~~~~~~~~l~~----l-~~~dl 165 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM-SAMKD-----TF--SNSETSEEQLLND----L-SNVDL 165 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH-HHHHH-----HH--hhccccHHHHHHH----h-ccCCE
Confidence 458999997777555 788888888777544444322111 00110 11 0000001111111 1 11228
Q ss_pred EEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcC
Q 007819 259 ILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 299 (588)
Q Consensus 259 lI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpE 299 (588)
+|+.++|....+-.+ .+.+-..|..|+...++ +|+.+.
T Consensus 166 LvIDDig~~~~s~~~-~~~l~~Ii~~Ry~~~~~--tiitSN 203 (244)
T PRK07952 166 LVIDEIGVQTESRYE-KVIINQIVDRRSSSKRP--TGMLTN 203 (244)
T ss_pred EEEeCCCCCCCCHHH-HHHHHHHHHHHHhCCCC--EEEeCC
Confidence 899999876544221 23455667778875443 555543
No 163
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=42.34 E-value=1e+02 Score=34.34 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=57.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
.+||.|+=+|| .-|+.++.+.+ . +.+||...+ . +.+|+..+......+ +
T Consensus 2 ~~kVLvlG~G~---re~al~~~l~~----~--g~~v~~~~~-~--------------------~Npg~~~~a~~~~~~-~ 50 (435)
T PRK06395 2 TMKVMLVGSGG---REDAIARAIKR----S--GAILFSVIG-H--------------------ENPSIKKLSKKYLFY-D 50 (435)
T ss_pred ceEEEEECCcH---HHHHHHHHHHh----C--CCeEEEEEC-C--------------------CChhhhhcccceeec-C
Confidence 46888877776 34666666632 2 457887753 1 112321221111112 3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
..+++.+++.|+++++|++|+ |-++-. +.-++..|.+.| ++|+|-++-
T Consensus 51 ~~d~e~l~~~~~~~~id~Vi~-~~d~~l--~~~~~~~l~~~G--i~v~gps~~ 98 (435)
T PRK06395 51 EKDYDLIEDFALKNNVDIVFV-GPDPVL--ATPLVNNLLKRG--IKVASPTME 98 (435)
T ss_pred CCCHHHHHHHHHHhCCCEEEE-CCChHH--HHHHHHHHHHCC--CcEECCCHH
Confidence 345788999999999998776 544433 446677777776 677776543
No 164
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=42.02 E-value=42 Score=37.60 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=28.6
Q ss_pred ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 257 KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 257 kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
-|+|+| +. .++.. ...+++.|.+|.+. ++|+||+|+||+-.
T Consensus 275 ~ilIPE-~~---f~l~~-~~~ll~~l~~r~~~-~~~~VIVVAEGag~ 315 (443)
T PRK06830 275 FVLIPE-VP---FDLEG-PNGLLAALEKRLAE-RGHAVIVVAEGAGQ 315 (443)
T ss_pred EEEecC-CC---CCchh-HHHHHHHHHHHHHh-CCceEEEEecCccc
Confidence 467766 44 44432 23567778888876 88999999999853
No 165
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=41.71 E-value=2e+02 Score=32.04 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=62.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.-+.+||||+|-. +++++-++.-+ ..++|..+++-|.- .-||-
T Consensus 127 ~~p~~i~vits~~-~aa~~D~~~~~----~~r~p~~~~~~~~~---------------------~vQG~----------- 169 (432)
T TIGR00237 127 HFPKRVGVITSQT-GAALADILHIL----KRRDPSLKVVIYPT---------------------LVQGE----------- 169 (432)
T ss_pred CCCCEEEEEeCCc-cHHHHHHHHHH----HhhCCCceEEEecc---------------------cccCc-----------
Confidence 4579999999853 55555555544 44566656552221 11222
Q ss_pred CChHHHHHHHHHHHHc-CCcEEEEecCcccHHHHHHHHHHHHhc---CCCceEE-EeeecccC
Q 007819 164 RTTEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVV-GVPVTLNG 221 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l-~Id~LviIGGddS~~~A~~Lae~~~~~---g~~i~VI-gVPKTIDN 221 (588)
..+..+-++++.+... ++|.+|++=|-||...-..+.++-..+ .++|+|| ||=--+|.
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 1345566666666654 489999999999999887776654332 5678876 44444443
No 166
>PRK00861 putative lipid kinase; Reviewed
Probab=41.20 E-value=43 Score=34.90 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.++...+.+.|.+|++|||||...+.. .+... ++++--+|-===||+. .++|...
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~~--~~~lgviP~GTgNdfA-----r~lgi~~ 103 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGDGTLSAVAG---ALIGT--DIPLGIIPRGTANAFA-----AALGIPD 103 (300)
T ss_pred HHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhcC--CCcEEEEcCCchhHHH-----HHcCCCC
Confidence 44444455678899999999999877542 22222 4677778876667776 5666654
No 167
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=41.18 E-value=2.5e+02 Score=26.20 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHcC---CcEEEEec-CcccHHHHHHHHHHHHhcCCC
Q 007819 165 TTEQVNAALTACKNLN---LDGLVIIG-GVTSNTDAAYLAETFAEAKCP 209 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~---Id~LviIG-GddS~~~A~~Lae~~~~~g~~ 209 (588)
+.+.+.++++.+++++ +...+++| ++++......+.+++.+.+.+
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4577888899999999 55556676 347888888999988877754
No 168
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=40.74 E-value=2.1e+02 Score=29.05 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+.....++.+...++|++++.+-+.+ ......+.+.+.| ++||.+
T Consensus 43 ~~q~~~i~~l~~~~vdgiIi~~~~~~--~~~~~l~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 43 EGQIEVVNSLIAQKVDAIAISANDPD--ALVPALKKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChH--HHHHHHHHHHHCC--CEEEEe
Confidence 44456788898999999999876422 2222234455555 688754
No 169
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.61 E-value=3.8e+02 Score=26.37 Aligned_cols=88 Identities=16% Similarity=0.037 Sum_probs=51.6
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
||||+..-=..|-...++.|+-+.++++ +..+. +..+ .. -.+++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~-~~-~~~~~ 44 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKEL--GVKVT--------------------------------FQGP-AS-ETDVA 44 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHc--CCEEE--------------------------------EecC-cc-CCCHH
Confidence 5788875545677778888888777642 22221 1100 00 11344
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...++++.+...++|++++.+.+... ....+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~~-~~~~l-~~~~~~~--ipvV~~ 88 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAKA-LVPPL-KEAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChhh-hHHHH-HHHHHCC--CCEEEe
Confidence 55677888888999999998876432 12233 3334444 677775
No 170
>PRK12361 hypothetical protein; Provisional
Probab=39.59 E-value=42 Score=38.34 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
.....+.+.+.+.|.+|++|||||...+.. .+. +.++++--+|.==-||+.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~--~~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVAS---ELV--NTDITLGIIPLGTANALS 336 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHh--cCCCCEEEecCCchhHHH
Confidence 344455555678899999999999877653 222 234677778977778886
No 171
>PRK08939 primosomal protein DnaI; Reviewed
Probab=39.31 E-value=88 Score=33.17 Aligned_cols=112 Identities=16% Similarity=0.302 Sum_probs=65.6
Q ss_pred HHHHHHHHHc----CCcEEEEecCcccHHH--HHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHH
Q 007819 170 NAALTACKNL----NLDGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (588)
Q Consensus 170 ~~i~~~l~~l----~Id~LviIGGddS~~~--A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae 243 (588)
+.+.+.++.+ .-.+|++.|..|+=.+ |+.++.++.++|..+.++.+|. +=++++.. ++-.| +.+
T Consensus 141 ~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~-l~~~lk~~-----~~~~~----~~~ 210 (306)
T PRK08939 141 MAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE-FIRELKNS-----ISDGS----VKE 210 (306)
T ss_pred HHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH-HHHHHHHH-----HhcCc----HHH
Confidence 3445555543 3569999998888665 7778888888898888888883 22344322 11111 112
Q ss_pred HHHHHHHHhhhccceEEecccccccCChhhHHHHHHHHH-HHHHHCCCCeEEEEEcC
Q 007819 244 LISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAV-QARAEQDKNHGVILLPE 299 (588)
Q Consensus 244 ~I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I-~~R~~~gk~~gvIlIpE 299 (588)
.+.. .....++|+.++|...+|-. ..+.+...| ..|+...+ .+|+-+.
T Consensus 211 ~l~~-----l~~~dlLiIDDiG~e~~s~~-~~~~ll~~Il~~R~~~~~--~ti~TSN 259 (306)
T PRK08939 211 KIDA-----VKEAPVLMLDDIGAEQMSSW-VRDEVLGVILQYRMQEEL--PTFFTSN 259 (306)
T ss_pred HHHH-----hcCCCEEEEecCCCccccHH-HHHHHHHHHHHHHHHCCC--eEEEECC
Confidence 2221 12233999999998766632 133455544 67876544 3554443
No 172
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=39.19 E-value=1.9e+02 Score=27.33 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHc-CCc
Q 007819 104 VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL-NLD 182 (588)
Q Consensus 104 vI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l-~Id 182 (588)
....+++.+... +++=+++..+... ...........+.+...|.. +.........+++.++.+.+.+++. +.+
T Consensus 111 ~~~~~~~~l~~~--~~~~i~~i~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (269)
T cd01391 111 AGEAAAEYLAEK--GWKRVALIYGDDG---AYGRERLEGFKAALKKAGIE-VVAIEYGDLDTEKGFQALLQLLKAAPKPD 184 (269)
T ss_pred HHHHHHHHHHHh--CCceEEEEecCCc---chhhHHHHHHHHHHHhcCcE-EEeccccCCCccccHHHHHHHHhcCCCCC
Confidence 344455555433 3555666654332 11111111222333444433 3332222332335677888888887 788
Q ss_pred EEEEecCcccHHHHHHHHHHHHhcCC---CceEEEeeec
Q 007819 183 GLVIIGGVTSNTDAAYLAETFAEAKC---PTKVVGVPVT 218 (588)
Q Consensus 183 ~LviIGGddS~~~A~~Lae~~~~~g~---~i~VIgVPKT 218 (588)
++++.+. ..|..+.+++.+.|. ++.|++.--+
T Consensus 185 ~i~~~~~----~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 185 AIFACND----EMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred EEEEcCc----hHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 8888654 344555555666665 5777766443
No 173
>PRK05637 anthranilate synthase component II; Provisional
Probab=38.80 E-value=63 Score=32.27 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 174 ~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
+.+.+.+.|++|+-||-++-..+....+.++...-+++|.|| |+|++..+..+
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI---------------ClG~Qlla~al 90 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI---------------CLGFQALLEHH 90 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE---------------cHHHHHHHHHc
Confidence 334567899999999999998875544444322224677764 99998777664
No 174
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.76 E-value=2e+02 Score=31.87 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=63.0
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.-+++||||+|-. ++|++-++..+ ..++|..+++-|.-=. ||=
T Consensus 133 ~~p~~I~viTs~~-gAa~~D~~~~~----~~r~p~~~~~~~~~~v---------------------QG~----------- 175 (438)
T PRK00286 133 FFPKRIGVITSPT-GAAIRDILTVL----RRRFPLVEVIIYPTLV---------------------QGE----------- 175 (438)
T ss_pred CCCCEEEEEeCCc-cHHHHHHHHHH----HhcCCCCeEEEecCcC---------------------cCc-----------
Confidence 3479999999854 45566555555 4456665555443111 221
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc---CCCceEE-EeeecccCC
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVV-GVPVTLNGD 222 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~---g~~i~VI-gVPKTIDND 222 (588)
..+.++-++++.+...++|.+|++=|-||...-..+.++...+ .++|+|| ||=--+|.=
T Consensus 176 ~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~t 238 (438)
T PRK00286 176 GAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFT 238 (438)
T ss_pred cHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCcc
Confidence 1345566666777666689999999999998876555543322 5577775 455555443
No 175
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=38.75 E-value=75 Score=34.49 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=67.9
Q ss_pred EEecCCCccc-HHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCe----EecCHhhHhchhhcCCccccccccCCCCC
Q 007819 91 IVFCGRQSPG-GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT----LEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 91 Iv~sGG~aPG-~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~----~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
|+.+||-+.| ++.. .+.+.+++..++..++|.-++ . +...- .+++.-.+.++. ..+..- +.-
T Consensus 8 i~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~-~--m~~~g~~~~~~~~~l~v~G~~-----~~l~~~---~~~ 74 (385)
T TIGR00215 8 IALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP-R--MAAEGCEVLYSMEELSVMGLR-----EVLGRL---GRL 74 (385)
T ss_pred EEEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH-H--HHhCcCccccChHHhhhccHH-----HHHHHH---HHH
Confidence 3444554544 4444 888888877788888886532 1 11111 222222222211 011110 111
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEE-eeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG-VPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIg-VPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
..-+.++.+.+++.+.|.+|.+||-+-+-. ++...+..| +++|. ||-.+ | +.. .-+.+.++..
T Consensus 75 ~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~---~a~aa~~~g--ip~v~~i~P~~-w---------aw~-~~~~r~l~~~ 138 (385)
T TIGR00215 75 LKIRKEVVQLAKQAKPDLLVGIDAPDFNLT---KELKKKDPG--IKIIYYISPQV-W---------AWR-KWRAKKIEKA 138 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccHH---HHHHHhhCC--CCEEEEeCCcH-h---------hcC-cchHHHHHHH
Confidence 234567889999999999999998553332 333333345 45543 33221 1 222 2236677777
Q ss_pred HHHHHHH
Q 007819 245 ISNVCTD 251 (588)
Q Consensus 245 I~nl~~d 251 (588)
++.+...
T Consensus 139 ~d~v~~~ 145 (385)
T TIGR00215 139 TDFLLAI 145 (385)
T ss_pred HhHhhcc
Confidence 6666543
No 176
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=38.19 E-value=3.5e+02 Score=26.64 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=54.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
||||++..-.-|....++.|+-+.++... ..|+ + ++ .++..+.. +.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~--------~~g~------~-~~---------------l~i~~~~~---~~~ 47 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELK--------KAGL------I-SE---------------FIVTSADG---DVA 47 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhh--------ccCC------e-eE---------------EEEecCCC---CHH
Confidence 57888877777778888888877665321 0011 0 00 01222221 334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
...+.++.+...++|++++.+.+... ....+ +.+.++| ++||.+-..+
T Consensus 48 ~~~~~~~~~~~~~vdgiIi~~~~~~~-~~~~l-~~~~~~~--iPvv~~~~~~ 95 (272)
T cd06300 48 QQIADIRNLIAQGVDAIIINPASPTA-LNPVI-EEACEAG--IPVVSFDGTV 95 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhh-hHHHH-HHHHHCC--CeEEEEecCC
Confidence 45667777888899999998876321 11122 3344444 7888875433
No 177
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=38.08 E-value=51 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCC---ceEEEeeecccCCCCC
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCP---TKVVGVPVTLNGDLKN 225 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~---i~VIgVPKTIDNDL~~ 225 (588)
..|.+|++|||||...+.. .+.+.... +++.-+|.==-||+..
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfar 94 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLAR 94 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHHH
Confidence 4679999999999887642 22323323 6888899777888863
No 178
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=38.05 E-value=49 Score=32.24 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=33.1
Q ss_pred HHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 175 ACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 175 ~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
.+.+++.|++|+-||.|+-..+..-.+.+++...+++|.|| |+|++-.+..+
T Consensus 38 ~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI---------------C~G~Qll~~~~ 89 (188)
T TIGR00566 38 EIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV---------------CLGHQAMGQAF 89 (188)
T ss_pred HHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE---------------CHHHHHHHHHc
Confidence 34667899999999998875533222222221224677774 89988766554
No 179
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=37.57 E-value=23 Score=32.19 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=44.0
Q ss_pred CCChHHHHHH-HHhhhcccCCcccCCcccccccCCCCCccceEEeccc--chhhhHHHHHHHHH
Q 007819 487 MRGKAYELLR-QNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDR--DYMGRIKELQKYLD 547 (588)
Q Consensus 487 l~g~~f~~~~-~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~--~y~~~~~~~~~~~~ 547 (588)
++...|+.+. +.--+|+..+..-..=..||.||..+..+++..+-.. .-..+|+.|+++++
T Consensus 7 ~~~~~f~~l~r~~~~rwa~h~~ig~~p~~Q~~G~~~~~itl~g~l~~~~~~~~~~l~~Lr~~~~ 70 (121)
T PF06995_consen 7 VSTLTFQELQRSSSARWAEHERIGGKPALQFTGPGLDTITLSGVLFPEFGGGRKELDKLRAMAE 70 (121)
T ss_pred ecccChHHheeeeccccccceeccCCCcceecCCCCceEEEEEEEehHHCCCHHHHHHHHHHHH
Confidence 3566777665 5667899999999988999999998888887777433 23455555555444
No 180
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.25 E-value=94 Score=29.90 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=53.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|.++ |+ +|+ ++..+.+.+++.+|+-++.|.++||-+..+. .+.++. .|.-+.|++-.+-..++.
T Consensus 46 ~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~-I~~~~pdiv~vglG~PkQ 112 (171)
T cd06533 46 GLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIER-INASGADILFVGLGAPKQ 112 (171)
T ss_pred CCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHH-HHHcCCCEEEEECCCCHH
Confidence 4667666 33 444 4445556677789999999999999873221 113444 344455676666555543
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecC
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGG 189 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGG 189 (588)
+. =+.++..+++-..++.+||
T Consensus 113 E~---~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 EL---WIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HH---HHHHHHHHCCCCEEEEece
Confidence 32 2344555557777888888
No 181
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.90 E-value=46 Score=31.86 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
++++.+.+.++++++.+.+.+|.+-|- ++.-+-.++-. ...+|||||-
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~-~a~Lpgvva~~-----t~~PVIgvP~ 86 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGM-SAALPGVVASL-----TTLPVIGVPV 86 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEES-S--HHHHHHHH-----SSS-EEEEEE
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCC-cccchhhheec-----cCCCEEEeec
Confidence 467888889999988888877776665 33334445442 3579999993
No 182
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.80 E-value=3.2e+02 Score=27.79 Aligned_cols=89 Identities=16% Similarity=0.072 Sum_probs=56.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+||+| +|.+.|.++.-+.|..+.++..+|+.+++...- |+ ..
T Consensus 119 ~t~kVG~I-~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~------------------------------g~----~~ 163 (258)
T cd06353 119 KTNKVGYV-AAFPIPEVVRGINAFALGARSVNPDATVKVIWT------------------------------GS----WF 163 (258)
T ss_pred cCCcEEEE-cCcccHHHHHHHHHHHHHHHHHCCCcEEEEEEe------------------------------cC----CC
Confidence 34678888 566788888888888888887777776654221 11 12
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++.-.++.+.+...+.|.++-.+ ++ .++. +.++++| +.+||+-
T Consensus 164 D~~~a~~~a~~l~~~G~DvI~~~~--~~-~g~~---~aa~~~g--~~~IG~d 207 (258)
T cd06353 164 DPAKEKEAALALIDQGADVIYQHT--DS-PGVI---QAAEEKG--VYAIGYV 207 (258)
T ss_pred CcHHHHHHHHHHHHCCCcEEEecC--CC-hHHH---HHHHHhC--CEEEeec
Confidence 334445566777788999888886 21 2332 2333455 6888875
No 183
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=36.60 E-value=2.3e+02 Score=28.02 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=55.0
Q ss_pred CEEEEEcCchhhhhcCCe---------EecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecC
Q 007819 119 STLLGFLGGSEGLFAQKT---------LEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189 (588)
Q Consensus 119 ~~v~Gf~~G~~GL~~~~~---------~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGG 189 (588)
..+++.=+|..=+++..+ =-++++..+.|.. .|..++-.... ++.-+++++++.+.+++.+-++++|+
T Consensus 19 ~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~-~~~~~~~~~~e--KD~TD~e~Al~~~~~~~~~~i~i~Ga 95 (203)
T TIGR01378 19 DLVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKK-AGVKIIVFPPE--KDTTDLELALKYALERGADEITILGA 95 (203)
T ss_pred CEEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHH-cCCceEEcCCC--CCCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 368899999988877543 2455666666654 34434432222 24457999999999999999999998
Q ss_pred cc-----cHHHHHHHHHH
Q 007819 190 VT-----SNTDAAYLAET 202 (588)
Q Consensus 190 dd-----S~~~A~~Lae~ 202 (588)
-| ++.+...|.++
T Consensus 96 ~GgR~DH~lani~~L~~~ 113 (203)
T TIGR01378 96 TGGRLDHTLANLNLLLEY 113 (203)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 65 45566666655
No 184
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.99 E-value=1.7e+02 Score=29.02 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=39.5
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||+|+.||+ .+. ...+.+++.......+|..+. .++- ......+...-|-..+--+..++.+.
T Consensus 2 ~ki~vl~sg~-gs~----~~~ll~~~~~~~~~~~I~~vv-------s~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~ 65 (200)
T PRK05647 2 KRIVVLASGN-GSN----LQAIIDACAAGQLPAEIVAVI-------SDRP----DAYGLERAEAAGIPTFVLDHKDFPSR 65 (200)
T ss_pred ceEEEEEcCC-Chh----HHHHHHHHHcCCCCcEEEEEE-------ecCc----cchHHHHHHHcCCCEEEECccccCch
Confidence 7899999988 222 334555443322223343322 1110 01122223333333333222333333
Q ss_pred HHH-HHHHHHHHHcCCcEEEEec
Q 007819 167 EQV-NAALTACKNLNLDGLVIIG 188 (588)
Q Consensus 167 e~~-~~i~~~l~~l~Id~LviIG 188 (588)
+.+ +.+.+.+++.+.|.+|+.|
T Consensus 66 ~~~~~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 66 EAFDAALVEALDAYQPDLVVLAG 88 (200)
T ss_pred hHhHHHHHHHHHHhCcCEEEhHH
Confidence 333 2456778888888766543
No 185
>CHL00101 trpG anthranilate synthase component 2
Probab=34.92 E-value=54 Score=31.97 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=30.7
Q ss_pred HHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH
Q 007819 176 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (588)
Q Consensus 176 l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 239 (588)
+.+++.|++|+.||.++-.......+..+....+++|.|| |+|++-.+.
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI---------------ClG~Qlla~ 87 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV---------------CLGHQSIGY 87 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE---------------chhHHHHHH
Confidence 4567899999999999876533222221111223566664 899886665
No 186
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=34.90 E-value=85 Score=33.37 Aligned_cols=103 Identities=22% Similarity=0.276 Sum_probs=61.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+...||++..--..|--..++.|+-+.+... +.. .++..+..
T Consensus 56 ~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~---------------------------------~~l~~~~~-- 98 (333)
T COG1609 56 GRTKTIGLVVPDITNPFFAEILKGIEEAAREA--GYS---------------------------------LLLANTDD-- 98 (333)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCE---------------------------------EEEECCCC--
Confidence 35567777776555566666777776666432 222 24444444
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
+++..+.+++.+...++||+|+.|-...-... +.+.+.+ +++|-+=.+.+ |.. . .++++|
T Consensus 99 -~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--~P~V~i~~~~~-~~~--~--~~V~~D 158 (333)
T COG1609 99 -DPEKEREYLETLLQKRVDGLILLGERPNDSLL----ELLAAAG--IPVVVIDRSPP-GLG--V--PSVGID 158 (333)
T ss_pred -CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH----HHHHhcC--CCEEEEeCCCc-cCC--C--CEEEEC
Confidence 56778889999999999999999922222222 2333344 56666555444 222 1 466666
No 187
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=34.78 E-value=2.2e+02 Score=27.41 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=53.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+||++......|-....+.|+.++++.+ +.++.- .... .+++
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~--g~~~~~---------------------------------~~~~---~~~~ 42 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREA--GYSVLL---------------------------------CNSD---EDPE 42 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHc--CCEEEE---------------------------------EcCC---CCHH
Confidence 4788887778888888999998887642 222211 0011 1234
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.....++.+...++|++++.+.+.+... .+.+.+.| ++||.+
T Consensus 43 ~~~~~~~~~~~~~~d~iii~~~~~~~~~----~~~~~~~~--ipvv~~ 84 (264)
T cd06267 43 KEREALELLLSRRVDGIILAPSRLDDEL----LEELAALG--IPVVLV 84 (264)
T ss_pred HHHHHHHHHHHcCcCEEEEecCCcchHH----HHHHHHcC--CCEEEe
Confidence 4455667778889999999988876544 23344445 677776
No 188
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.62 E-value=49 Score=32.03 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHHHHHHHH---cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 168 QVNAALTACKN---LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 168 ~~~~i~~~l~~---l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+..-+++.++- -++|.++++-||+=.+- |++.++++|..+-++|+|+..-.+|.
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~ 146 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFSTALQ 146 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHH
Confidence 45555555554 69999999999997764 55667778988888888865544443
No 189
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.37 E-value=53 Score=34.92 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeeccc
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTID 220 (588)
.+++.++..|.+ .+|.++||||-.|. |..+|++.+++.+.++-.|-=+.=||
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~Ss-NT~kL~~i~~~~~~~t~~Ie~~~el~ 249 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSS-NSNRLREVAEEAGAPAYLIDDASEID 249 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-cHHHHHHHHHHHCCCEEEECChHHCc
Confidence 344444555543 79999999999986 45778898887775455554444444
No 190
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=33.30 E-value=80 Score=34.96 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeeccc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTID 220 (588)
...|.++.++.+.... |.+||.|||||... .+.-.|++++-..+|--+|---|
T Consensus 102 ~~gqak~l~e~~~t~~-Dii~VaGGDGT~~e--VVTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 102 NQGQAKALAEAVDTQE-DIIYVAGGDGTIGE--VVTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred cHHHHHHHHHHhccCC-CeEEEecCCCcHHH--hhHHHHhcccccCceeeccCccc
Confidence 4456777777777666 99999999999765 34556676665566666664333
No 191
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.29 E-value=45 Score=35.15 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
.+.+.++..| ...+|.++||||-.|. |..+|++-+.+.+.++-.|-=|.=||-|
T Consensus 197 ~~RQ~a~~~L-a~~vD~miVVGg~~Ss-NT~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 197 KKRQESAKEL-SKEVDVMIVIGGKHSS-NTQKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hhHHHHHHHH-HHhCCEEEEecCCCCc-cHHHHHHHHHHHCCCEEEECChHHCCHH
Confidence 3455555555 3479999999999986 4467888888777555555555555533
No 192
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=33.11 E-value=4e+02 Score=27.82 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=54.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+||++...-..|..+.++.|+.+.++... +..+ ++..+. .
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~---------------------------------~~~~~~---~ 65 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQL---------------------------------LMNDSQ---N 65 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEE---------------------------------EEecCC---C
Confidence 45788888876667777778888877765321 1111 111111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
+.+.....++.+...++|++++.+.+..... ..+ +.+.+.| ++||.+=.
T Consensus 66 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd~ 114 (330)
T PRK15395 66 DQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFNK 114 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEcC
Confidence 2233345677789999999999987653332 233 3344455 67777644
No 193
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=33.00 E-value=5.1e+02 Score=28.90 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=67.4
Q ss_pred EEecCCCcccHH-HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccccc-CCCCChHH
Q 007819 91 IVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIRTTEQ 168 (588)
Q Consensus 91 Iv~sGG~aPG~N-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R-~k~~~~e~ 168 (588)
||+.=|-|-|-+ .-|++++..+. ..|+++.-|.. |--||+ -|.|.| +..-..++
T Consensus 128 vvilpGltg~S~~~YVr~lv~~a~--~~G~r~VVfN~---------------------RG~~g~-~LtTpr~f~ag~t~D 183 (409)
T KOG1838|consen 128 VVILPGLTGGSHESYVRHLVHEAQ--RKGYRVVVFNH---------------------RGLGGS-KLTTPRLFTAGWTED 183 (409)
T ss_pred EEEecCCCCCChhHHHHHHHHHHH--hCCcEEEEECC---------------------CCCCCC-ccCCCceeecCCHHH
Confidence 333334444444 45888887775 34677776653 334576 666666 44556799
Q ss_pred HHHHHHHHHHcCCcE-EEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 169 VNAALTACKNLNLDG-LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~-LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++.+++.+++.-=++ |+.+| .--+|+.|..|+.+.|-+.++++-
T Consensus 184 l~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~g~~~~l~~a 228 (409)
T KOG1838|consen 184 LREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEEGDNTPLIAA 228 (409)
T ss_pred HHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhccCCCCceeE
Confidence 999999999887777 77765 445788999999988887766653
No 194
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=32.92 E-value=91 Score=34.29 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=70.9
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
++|+|+. |-++| +..-+++++.+++.+++-+.+|+- |..=--.+ +.. .-+++.+.-+|=+..|+.= ++.-
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvg-G~~m~aeG-~~s--l~~~~elsvmGf~EVL~~l---p~ll 71 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVG-GEKMEAEG-LES--LFDMEELSVMGFVEVLGRL---PRLL 71 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEec-cHHHHhcc-Ccc--ccCHHHHHHhhHHHHHHHH---HHHH
Confidence 3555554 44443 567788999999999999999986 22211111 110 0122223333333333321 1122
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.-+.+.++++.+.+.|.||.|- |..--..+++.+++.|.++++|+-
T Consensus 72 k~~~~~~~~i~~~kpD~~i~ID---sPdFnl~vak~lrk~~p~i~iihY 117 (381)
T COG0763 72 KIRRELVRYILANKPDVLILID---SPDFNLRVAKKLRKAGPKIKIIHY 117 (381)
T ss_pred HHHHHHHHHHHhcCCCEEEEeC---CCCCchHHHHHHHHhCCCCCeEEE
Confidence 4467778888899999999984 444456788888999988888873
No 195
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.91 E-value=4.7e+02 Score=25.47 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=63.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.||||+.+-..|-...++.|+-+.+++. +..+.- ..+.. .+++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~--~~~~~~--------------------------------~~~~~---~~~~ 43 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREA--GYAVTL--------------------------------SMLAE---ADEE 43 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHC--CCeEEE--------------------------------EeCCC---CchH
Confidence 3788888888888888888888877653 333321 11111 1224
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch--hHHHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD--TICKVNSQLI 245 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd--TA~k~~ae~I 245 (588)
...+.++.+.+.++||+++.+-+.+.. + +.+ +.+.| ++||.+=...+ ... .++|+| .|.+.+++.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~~~~~~----~~~--~~v~~d~~~~g~~~~~~l 111 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFVDGSPS----PRV--STVSVDQEGGARLATEHL 111 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEEeccCC----CCC--CEEEeCcHHHHHHHHHHH
Confidence 455678888899999999988766543 2 222 33444 67776633332 112 456665 3444444444
No 196
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.72 E-value=2.1e+02 Score=28.30 Aligned_cols=90 Identities=22% Similarity=0.143 Sum_probs=54.2
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
|||++..-..|-...++.|+-+.++.. +..+. +..+. .+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQY--GYTVL---------------------------------LCNTY---RGGVS 43 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---CChHH
Confidence 688887777788888888888877642 23322 11111 12344
Q ss_pred HHHHHHHHHHcCCcEEEEecCccc-H-HHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTS-N-TDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS-~-~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
..+.++.+...++||+++.+..-. . ..+..+ +.+.++| ++||.+=...
T Consensus 44 ~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i-~~~~~~~--ipvV~i~~~~ 93 (273)
T cd06292 44 EADYVEDLLARGVRGVVFISSLHADTHADHSHY-ERLAERG--LPVVLVNGRA 93 (273)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcccchhHHH-HHHHhCC--CCEEEEcCCC
Confidence 567789999999999999985422 1 222333 3344444 6777753333
No 197
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.67 E-value=98 Score=27.85 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEE
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIg 214 (588)
.++....+++.|.++++++++++.|.. ...+.+.+++.| ++++|
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~----~~~~~~~a~~~g--i~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAE----SEELIEAAREAG--IRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS------HHHHHHHHHTT---EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchH----HHHHHHHHHHcC--CEEEe
Confidence 457788899999999999999999932 234445555555 68876
No 198
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=32.65 E-value=1.6e+02 Score=31.46 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=68.3
Q ss_pred EEEEecCCCcccHH--HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccc-cCCC-C
Q 007819 89 VGIVFCGRQSPGGH--NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT-KDQI-R 164 (588)
Q Consensus 89 IgIv~sGG~aPG~N--nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~-R~k~-~ 164 (588)
--|+++||+ |=++ ..+..+++.++... .+.+++-|...... .-..+|++.++.+++.|=. ++..+ .... +
T Consensus 161 ~eV~lsGGD-PLl~~d~~L~~ll~~L~~i~---~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~~-~~~vsh~nh~~E 234 (331)
T TIGR00238 161 IEILISGGD-PLMAKDHELEWLLKRLEEIP---HLVRLRIGTRLPVV-IPQRITDELCELLASFELQ-LMLVTHINHCNE 234 (331)
T ss_pred CEEEEECCc-cccCCHHHHHHHHHHHHhcC---CccEEEeecCCCcc-CchhcCHHHHHHHHhcCCc-EEEEccCCChHh
Confidence 368999998 4443 34888888776432 23334433332110 1134678888777776532 22222 1111 2
Q ss_pred ChHHHHHHHHHHHHcCCc----EEEEecCcccHHHHHHHHHHHHhcCC
Q 007819 165 TTEQVNAALTACKNLNLD----GLVIIGGVTSNTDAAYLAETFAEAKC 208 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id----~LviIGGddS~~~A~~Lae~~~~~g~ 208 (588)
..+...++++.|++.|+. ..+.-|=+|+......|.+.+.+.|+
T Consensus 235 i~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 235 ITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred CCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 235677788889888775 34566778888888888888766553
No 199
>PLN02327 CTP synthase
Probab=32.58 E-value=50 Score=38.03 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHH--HHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNT--DAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~--~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
.+..+-+.++ +.|++++-||.|+-. +....++++++++ +++.|| |.||+-++-.+++-+
T Consensus 352 ~y~~~~~~L~--~~DGIvvpGGfG~~~~~G~i~ai~~are~~--iP~LGI---------------ClGmQl~viefaRnv 412 (557)
T PLN02327 352 AYAAAWKLLK--GADGILVPGGFGDRGVEGKILAAKYARENK--VPYLGI---------------CLGMQIAVIEFARSV 412 (557)
T ss_pred hhhhhHHhhc--cCCEEEeCCCCCCcccccHHHHHHHHHHcC--CCEEEE---------------cHHHHHHHHHHHHhh
Confidence 4444545454 789999999975433 2333345655443 566664 999999999888866
Q ss_pred HHHHHHhhhc
Q 007819 246 SNVCTDALSA 255 (588)
Q Consensus 246 ~nl~~dA~S~ 255 (588)
-.+. ||.|.
T Consensus 413 lG~~-dAnS~ 421 (557)
T PLN02327 413 LGLK-DANST 421 (557)
T ss_pred cCCc-CCCcc
Confidence 5554 66665
No 200
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=32.44 E-value=50 Score=32.10 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 175 ACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 175 ~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
.+++++.|++|+-||.++-.......+.++....+++|.|| |+|++.-+..
T Consensus 38 ~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI---------------C~G~Qlla~~ 88 (191)
T PRK06774 38 DIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV---------------CLGHQALGQA 88 (191)
T ss_pred HHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE---------------CHHHHHHHHH
Confidence 35667999999999999876543322222211224677764 8888765544
No 201
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=32.07 E-value=5.8e+02 Score=26.27 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=55.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
....|||+...-..|=...++.|+-+.++.. +.+++- ..+. .
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~---------------------------------~~~~---~ 99 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQK--GYTLIL---------------------------------CNAW---N 99 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC---C
Confidence 4468999998877788888899988877643 333221 1111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+.+...+.++.+...++||+++.+++.+......|.++ .+ ++||.+
T Consensus 100 ~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~---~~--iPvV~~ 145 (341)
T PRK10703 100 NLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEY---RH--IPMVVM 145 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc---CC--CCEEEE
Confidence 23444566777888999999999886543322333221 34 677754
No 202
>PRK06186 hypothetical protein; Validated
Probab=31.92 E-value=85 Score=32.11 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCcEEEEecCcccH--HHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcc
Q 007819 180 NLDGLVIIGGVTSN--TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE 256 (588)
Q Consensus 180 ~Id~LviIGGddS~--~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~ 256 (588)
++||++|.||.|.- .+.-..++|+++++ +++.| .|.|++.|+=.++.-+-. ..||.|.+
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LG---------------IClGmQ~avIe~arnv~g-~~dA~s~E 113 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLG---------------TCGGFQHALLEYARNVLG-WADAAHAE 113 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEe---------------echhhHHHHHHHHhhhcC-CcCCCcCC
Confidence 77999999999873 44566677777665 56665 499999987666664432 44676653
No 203
>PLN02735 carbamoyl-phosphate synthase
Probab=31.91 E-value=2.7e+02 Score=34.97 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCcEEEE-ecCcccHHHHHHHHHHHHhcC-------CCceEEEe
Q 007819 169 VNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAK-------CPTKVVGV 215 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~Lvi-IGGddS~~~A~~Lae~~~~~g-------~~i~VIgV 215 (588)
.+.+++.|++.++|+++. +||+-.+.-|..+.+.+.+++ ..+.++|-
T Consensus 638 ~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~ 692 (1102)
T PLN02735 638 VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGT 692 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECC
Confidence 678899999999999996 888888888888888766543 13677763
No 204
>PRK00035 hemH ferrochelatase; Reviewed
Probab=31.88 E-value=6.1e+02 Score=26.87 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=98.9
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCc-hhhhhcCCeEecC-HhhHhchhhcCCccccccccCCCCC
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG-SEGLFAQKTLEVT-KEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G-~~GL~~~~~~eLt-~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
-|.++.-|||. ....|-.++.....+.+++.+... +.-++..-+.... .+....|+..|| || +-...|
T Consensus 7 ~vll~n~G~P~-----~~~~v~~fl~~~~~d~~v~~~~~~~~~~~l~~~i~~~r~~~~~~~Y~~ig~----gS-Pl~~~t 76 (333)
T PRK00035 7 AVLLLNLGGPE-----TPEDVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHYASIGG----GS-PLNVIT 76 (333)
T ss_pred EEEEEeCCCCC-----CHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhhhhhHHHHHHHHHHcCC----CC-hhHHHH
Confidence 45555569988 446666677666677777764321 2333333333333 345678888886 22 222236
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
.++.+++.+.+.+.+.+..|.+|=.=+.-.....-+.+.+.|+ ..||.+|-- .-.+..|...+..++
T Consensus 77 ~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~-~~IivlPL~-----------p~~s~~t~gs~~~~i- 143 (333)
T PRK00035 77 RRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGV-DRIVVLPLY-----------PQYSYSTTASYFEDL- 143 (333)
T ss_pred HHHHHHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCC-CEEEEEECC-----------CccccccHHHHHHHH-
Confidence 6777777777776566666666522111112222234555676 799999922 112222333333322
Q ss_pred HHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHC-C---CCeEEEEEcCCCc
Q 007819 246 SNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQ-D---KNHGVILLPEGLI 302 (588)
Q Consensus 246 ~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~-g---k~~gvIlIpEGl~ 302 (588)
.+.........++-++..++.. .+.++.+++.|.+..+. + +...+++..=|+-
T Consensus 144 ~~~~~~~~~~~~i~~i~~~~~~----p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P 200 (333)
T PRK00035 144 ARALAKLRLQPEIRFIRSYYDH----PGYIEALAESIREALAKHGEDPEPDRLLFSAHGLP 200 (333)
T ss_pred HHHHHhcCCCCcEEEeCCccCC----HHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCc
Confidence 2222222212346566656543 33455666666655432 2 3367888887764
No 205
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=31.82 E-value=1.3e+02 Score=29.64 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=51.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
|||++..-..|=.+.++.|+-++++.. +.+++ +..+. .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQ--GYNLI---------------------------------LCNTE---GDPER 43 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---CChHH
Confidence 677877666777777778887776532 23332 10011 13345
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
..+.++.+...++|++++.+.+........+. ... +++||.+-
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~---~~~--~ipvV~i~ 86 (269)
T cd06275 44 QRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLE---RYR--HIPMVVMD 86 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChHHHHHHH---hcC--CCCEEEEe
Confidence 56778889999999999999775533222221 112 47888553
No 206
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=31.82 E-value=1.3e+02 Score=28.52 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=69.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEe-cCHhhHhchhhcCCccccccccCCCCChH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLE-VTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~e-Lt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
|.++.-|||.. ...+-.++.....+..|+.+...+.=++..-+.+ -..+....|+..|| ||--. ..|.+
T Consensus 3 VLL~n~G~P~~-----~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~----~SPL~-~~t~~ 72 (159)
T cd03411 3 VLLVNLGGPES-----LEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGG----GSPLN-EITRA 72 (159)
T ss_pred EEEEeCCCCCC-----HHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCC----CCccH-HHHHH
Confidence 56677799988 6777777777777888877665442222221121 23456778999987 23211 23667
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+.+++.+.+.+...+..|.+|=.=+.-.....-+.+.+.|+ -++|.+|
T Consensus 73 q~~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~-~~iivlP 120 (159)
T cd03411 73 QAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGV-DRIVVLP 120 (159)
T ss_pred HHHHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCC-CEEEEEE
Confidence 77888888877655666666522111122233344555675 6899999
No 207
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.77 E-value=2.5e+02 Score=35.04 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=62.1
Q ss_pred CCCeEEEEEecCCCccc----HHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccc
Q 007819 84 HPAIRVGIVFCGRQSPG----GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT 159 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG----~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~ 159 (588)
...++|.|+-||+..-| .-.+-..+.++++. .|.+|+++-.-+....... ...+ .
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~~d~------~~ad-------------~ 63 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIMTDP------APAD-------------T 63 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhhcCc------ccCC-------------e
Confidence 34679999988854332 23333455566653 3789998864433222111 0000 0
Q ss_pred cCCCCChHHHHHHHHHHHHcCCcEEEE-ecCcccHHHHHHHHH--HHHhcCCCceEEEee
Q 007819 160 KDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAE--TFAEAKCPTKVVGVP 216 (588)
Q Consensus 160 R~k~~~~e~~~~i~~~l~~l~Id~Lvi-IGGddS~~~A~~Lae--~~~~~g~~i~VIgVP 216 (588)
.+ + .+-..+.+.+.|++.++|+++. +||......|..|++ .+.+.| ++++|.+
T Consensus 64 ~y-~-ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~~ 119 (1068)
T PRK12815 64 VY-F-EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGTN 119 (1068)
T ss_pred eE-E-CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECCC
Confidence 00 0 1112356677789999999985 588877777777765 355445 6777754
No 208
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.42 E-value=4e+02 Score=24.62 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEec
Q 007819 183 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGE 262 (588)
Q Consensus 183 ~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~E 262 (588)
.+++|=+|..-..-..|++.- +.+ .+++.|=|+-|++++. -..+++++|....-+.++- +.|
T Consensus 2 t~vliR~Ds~~Kil~ALaDle-Rya-giki~gkPrii~p~~a-------------D~~~~~ilGe~R~k~~~aa---~a~ 63 (125)
T COG1844 2 TIVLIRADSYDKILTALADLE-RYA-GIKIRGKPRIIPPELA-------------DEILSSILGEVRKKCKVAA---VAE 63 (125)
T ss_pred eEEEEecCcHHHHHHHHHHHH-Hhc-CceeecCCcccChhhH-------------HHHHHHHHHHHhcccchhh---eee
Confidence 478888888877777777643 233 5899999999999985 2456666666644333322 222
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCC
Q 007819 263 EVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 301 (588)
Q Consensus 263 e~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl 301 (588)
+.. .-..+|-+-..-.-+-++|+||++-
T Consensus 64 -v~~----------~a~~aI~rIr~IHPPAHiIVIs~r~ 91 (125)
T COG1844 64 -VEE----------PASKAIGRIRKIHPPAHIIVISPRH 91 (125)
T ss_pred -ecC----------ccHHHHHHHHhcCCCceEEEeCCCc
Confidence 211 1123333222335677999999987
No 209
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.18 E-value=4.4e+02 Score=24.54 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred EEEEecCCCcccHH-HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHh-hHhchhhcCCccccccccCCCCCh
Q 007819 89 VGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKE-ILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 89 IgIv~sGG~aPG~N-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~-~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
|.+-+.||+.=-+. |+++.+++ +.|.+|+= .| +..+.+ .++..... +.+++|-|--.-.+.
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~-----~~GfeVid-----LG------~~v~~e~~v~aa~~~-~adiVglS~L~t~~~ 64 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFT-----EAGFNVVN-----LG------VLSPQEEFIDAAIET-DADAILVSSLYGHGE 64 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHH-----HCCCEEEE-----CC------CCCCHHHHHHHHHHc-CCCEEEEeccccCCH
Confidence 44555566543322 34444432 34666651 11 233443 34444433 456777665444567
Q ss_pred HHHHHHHHHHHHcCC-cEEEEecCccc---HHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 167 EQVNAALTACKNLNL-DGLVIIGGVTS---NTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 167 e~~~~i~~~l~~l~I-d~LviIGGddS---~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
+.++++++.|++.++ +..|++||.-. .+.+. -.+.+++.|+ .-|.=|.|
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~-~~~~L~~~Gv--~~vf~pgt 117 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFED-VEKRFKEMGF--DRVFAPGT 117 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHH-HHHHHHHcCC--CEEECcCC
Confidence 889999999999999 88899999843 33322 2233455564 44444433
No 210
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=30.90 E-value=6.4e+02 Score=29.11 Aligned_cols=194 Identities=21% Similarity=0.276 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHH-HHHcCCc
Q 007819 104 VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTA-CKNLNLD 182 (588)
Q Consensus 104 vI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~-l~~l~Id 182 (588)
|-.=++++|.... ..++||+.+ +.+-..++.+..-++....|.+-. +. -.-+.+- -+-.|+.
T Consensus 6 vG~YL~~RL~qlg-i~~iFGVPG-----------DyNL~lLD~i~~~~~lrWvGn~NE-LN----aaYAADGYaR~~Gi~ 68 (557)
T COG3961 6 VGDYLFDRLAQLG-IKSIFGVPG-----------DYNLSLLDKIYSVPGLRWVGNANE-LN----AAYAADGYARLNGIS 68 (557)
T ss_pred HHHHHHHHHHhcC-CceeeeCCC-----------cccHHHHHHhhcCCCceeecccch-hh----hhhhhcchhhhcCce
Confidence 3455778887654 668888876 334455666777777767775432 11 1111221 1335899
Q ss_pred EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCC-------------------chhHHHHHHH
Q 007819 183 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVG-------------------FDTICKVNSQ 243 (588)
Q Consensus 183 ~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~G-------------------FdTA~k~~ae 243 (588)
+||.-=|.|-++..+-+|=-+.++--=+.|||+|-|=+..-. ...-||+| +=|..+....
T Consensus 69 alvTTfGVGELSA~NGIAGSYAE~vpVvhIvG~P~~~~q~~~-~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~ 147 (557)
T COG3961 69 ALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASG-LLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPR 147 (557)
T ss_pred EEEEecccchhhhhcccchhhhhcCCEEEEEcCCCcchhhcc-chheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHH
Confidence 999999999999988888755554323788999977655432 12235565 2233344667
Q ss_pred HHHHHHHHhhhccc---eEEeccccccc---------C----ChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchh
Q 007819 244 LISNVCTDALSAEK---VILGEEVAASK---------L----TLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPE 307 (588)
Q Consensus 244 ~I~nl~~dA~S~~k---vlI~Ee~~~~~---------~----tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe 307 (588)
.|+++..++.-.+| +.++-.+.... . +=.+....+.+.|.+.....|+ -++++.-+..
T Consensus 148 eIDrvi~~~~~~~RPvYI~lP~dva~~~~~~p~~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~--p~ILad~~~~---- 221 (557)
T COG3961 148 EIDRVIRTALKQRRPVYIGLPADVADLPIEAPLTPLDLQLKTSDPEALSEVIDTIAELINKAKK--PVILADALVS---- 221 (557)
T ss_pred HHHHHHHHHHHhcCCeEEEcchHHhcCcCCCCCCccccccCCCCHHHHHHHHHHHHHHHhccCC--cEEecchhhh----
Confidence 78888888888887 22221111110 0 1123344556666666665566 3445655554
Q ss_pred HHHHHHHHHHHHhc
Q 007819 308 VYALLKEIHSLLRQ 321 (588)
Q Consensus 308 ~~~li~el~~~l~~ 321 (588)
--.+.+|+++++..
T Consensus 222 r~~~~~~~~~l~~~ 235 (557)
T COG3961 222 RFGLEKELKKLINA 235 (557)
T ss_pred hhhhHHHHHHHHHh
Confidence 23445556655543
No 211
>PRK11096 ansB L-asparaginase II; Provisional
Probab=30.78 E-value=1.1e+02 Score=33.13 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHH--cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEE
Q 007819 165 TTEQVNAALTACKN--LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (588)
Q Consensus 165 ~~e~~~~i~~~l~~--l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIg 214 (588)
+++++.++.+.+++ .+.|++||.-|-|||...+.+-.++. +...+||-
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~~--~~~kPVVl 132 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTV--KCDKPVVL 132 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHhc--cCCCCEEE
Confidence 56777777777766 57999999999999988766555543 33345543
No 212
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=30.50 E-value=2.1e+02 Score=31.34 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=43.9
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
..+||.|.+|||- -+++++.. ++ ..|.+|+|+. +.+-.+ ...++. .
T Consensus 2 ~~~kV~v~mSGGV----DSSVaA~l--Lk--~QGyeViGl~-----------m~~~~~-----~~~~~C----------~ 47 (356)
T COG0482 2 KKKKVLVGMSGGV----DSSVAAYL--LK--EQGYEVIGLF-----------MKNWDE-----DGGGGC----------C 47 (356)
T ss_pred CCcEEEEEccCCH----HHHHHHHH--HH--HcCCeEEEEE-----------EEeecc-----CCCCcC----------C
Confidence 3579999999982 23333322 23 4589999986 222221 111122 2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEE
Q 007819 165 TTEQVNAALTACKNLNLDGLVI 186 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~Lvi 186 (588)
.++++..+...|++++|...++
T Consensus 48 s~~d~~da~~va~~LGIp~~~v 69 (356)
T COG0482 48 SEEDLRDAERVADQLGIPLYVV 69 (356)
T ss_pred chhHHHHHHHHHHHhCCceEEE
Confidence 4578899999999999998876
No 213
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=30.35 E-value=4e+02 Score=26.17 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=51.5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+|||+...-.-|=...++.|+-+.++.. .+.++. +..+. .+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~-~~~~~~---------------------------------~~~~~---~~~~ 43 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVL-GGVELQ---------------------------------FEDAK---NDVA 43 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHc-CCcEEE---------------------------------EeCCC---CCHH
Confidence 4777777666666777777777766541 111111 11111 2345
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.....++.+.+.++|++++.+.+.+... .+.+.+.+.+ ++||.+=
T Consensus 44 ~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~l~~~~--iPvv~~~ 88 (272)
T cd06301 44 TQLSQVENFIAQGVDAIIVVPVDTAATA--PIVKAANAAG--IPLVYVN 88 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhH--HHHHHHHHCC--CeEEEec
Confidence 5566788888899999999887643221 2333344444 7888653
No 214
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=30.20 E-value=1.3e+02 Score=31.18 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCcEEEEec-----CcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 171 AALTACKNLNLDGLVIIG-----GVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 171 ~i~~~l~~l~Id~LviIG-----GddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
.+++.+-.+|.|-.|.|- |-|+..+|..||.++++.++++-+.|- .|+|+|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 567777788999888774 569999999999999988887777774 67777764
No 215
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.91 E-value=4e+02 Score=23.89 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=32.8
Q ss_pred HhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCC-cEEEEecCcccHHHHH
Q 007819 144 LSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVTSNTDAA 197 (588)
Q Consensus 144 v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~I-d~LviIGGddS~~~A~ 197 (588)
++.....+ .++++-|.......+..+.+++.+++.+. +-.+++||........
T Consensus 43 ~~~a~~~~-~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~ 96 (122)
T cd02071 43 VEAAIQED-VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYE 96 (122)
T ss_pred HHHHHHcC-CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHH
Confidence 34444333 33555444333456778888888888877 6678888887644433
No 216
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.78 E-value=3.2e+02 Score=34.14 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCcEEEE-ecCcccHHHHHHHHHHHHhcCCCceEEEe-eeccc
Q 007819 169 VNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAKCPTKVVGV-PVTLN 220 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~Lvi-IGGddS~~~A~~Lae~~~~~g~~i~VIgV-PKTID 220 (588)
.+.+++.+++.++|++++ +||+-.. .+++.+.+.| ++++|- |.+|+
T Consensus 618 ~e~v~~i~~~e~~dgVi~~~g~~~~~----~la~~le~~G--i~ilg~s~~ai~ 665 (1066)
T PRK05294 618 LEDVLEIIEKEKPKGVIVQFGGQTPL----KLAKALEAAG--VPILGTSPDAID 665 (1066)
T ss_pred HHHHHHHHHHcCCCEEEEEeCchhHH----HHHHHHHHCC--CceeCCCHHHHH
Confidence 577888899999999998 6766544 4555555555 677775 46665
No 217
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.71 E-value=4.1e+02 Score=26.02 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=48.7
Q ss_pred EEEEecCC-CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 89 VGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 89 IgIv~sGG-~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
||||...- ..|-...++.|+.+.+... +..+ .+..+.. +++
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~--g~~~---------------------------------~~~~~~~---~~~ 43 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEED--GVEV---------------------------------IVLDANG---DVA 43 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhc--CCEE---------------------------------EEEcCCc---CHH
Confidence 67777553 6778888888888777642 1111 1111111 334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...+.++.+...++|++++.+.+.+.. ...+ +.+.+++ ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~l-~~~~~~~--iPvV~~ 87 (275)
T cd06317 44 RQAAQVEDLIAQKVDGIILWPTDGQAY-IPGL-RKAKQAG--IPVVIT 87 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcccc-HHHH-HHHHHCC--CcEEEe
Confidence 445567778888999999988764321 1222 3344444 677743
No 218
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.63 E-value=5.5e+02 Score=25.35 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=51.7
Q ss_pred EEEEEecCC-CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 88 RVGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 88 ~IgIv~sGG-~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||+++..- ..|-...++.|+-++++.. +..+. +..+.. .++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~--g~~v~---------------------------------~~~~~~--~~~ 43 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL--GVDVE---------------------------------YRGPET--FDV 43 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh--CCEEE---------------------------------EECCCC--CCH
Confidence 467777655 5677788888888777642 12221 111111 134
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++....++.+...++|++++.+.+..... ..+ +.+.++| ++||.+
T Consensus 44 ~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~--ipvV~~ 88 (271)
T cd06312 44 ADMARLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CeEEEe
Confidence 55567788888899999999987643211 223 3344455 677765
No 219
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=29.55 E-value=3.2e+02 Score=27.03 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh--HHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT--ICKVNSQL 244 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT--A~k~~ae~ 244 (588)
+.....++.+...++|++++.+.+.+... ..+ +.+.+.| ++||.+ |++........++|.|- +.+..++.
T Consensus 43 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~-~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~~~~g~~~~~~ 114 (270)
T cd06308 43 SKQVADIENFIRQGVDLLIISPNEAAPLT-PVV-EEAYRAG--IPVILL----DRKILSDKYTAYIGADNYEIGRQAGEY 114 (270)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCchhhch-HHH-HHHHHCC--CCEEEe----CCCCCCccceEEeecCcHHHHHHHHHH
Confidence 34455677788899999999876633211 223 3333444 677755 44333222113455553 33333333
Q ss_pred HHHHHHHhhhccceEEe
Q 007819 245 ISNVCTDALSAEKVILG 261 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~ 261 (588)
+-.. ...++|+.++
T Consensus 115 l~~~---~~g~~~i~~l 128 (270)
T cd06308 115 IANL---LPGKGNILEI 128 (270)
T ss_pred HHHH---cCCCceEEEE
Confidence 3222 1356675544
No 220
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=29.50 E-value=1.4e+02 Score=32.98 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
.+.+.++..|.+.++|.++||||--|. |..+|++.+.+.|.++-.|-=+.=||-+
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSS-NT~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSS-NTTHLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 456666666666689999999999885 4578999888877555555555555543
No 221
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=29.19 E-value=1.2e+02 Score=34.10 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeeccc
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTID 220 (588)
.+.+.++..|-+..+|.+|||||--|. |...|+|.+.+.|.++-.|-=|.=|+
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSS-NT~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSS-NTSHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHHhCCCEEEECCHHHcC
Confidence 344555555545579999999999885 44678898888776555555565555
No 222
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.18 E-value=62 Score=36.68 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCeEecCHhh---HhchhhcCCccccccccCCC--CChHHHHHH-HHHHHHcCCcEEEEecCcccHHHHH--HHHHHHHh
Q 007819 134 QKTLEVTKEI---LSTYKNQGGYDMLGRTKDQI--RTTEQVNAA-LTACKNLNLDGLVIIGGVTSNTDAA--YLAETFAE 205 (588)
Q Consensus 134 ~~~~eLt~~~---v~~~~n~GGs~~lgS~R~k~--~~~e~~~~i-~~~l~~l~Id~LviIGGddS~~~A~--~Lae~~~~ 205 (588)
++|++|.+.. ++.++..|-. ++. +-++ -+.++++.. .+.+.++ +||++|-||.|.--..- .-++|+++
T Consensus 295 GKYv~l~DaY~Sv~EAL~hag~~--~~~-~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yARE 370 (533)
T COG0504 295 GKYVELPDAYKSVIEALKHAGIA--LGV-KVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAIRYARE 370 (533)
T ss_pred ECCcCchhHHHHHHHHHHhhhhh--cCC-ceeeEEEccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHh
Confidence 4778888753 4445554432 221 1111 123333321 2234444 99999999999643332 33456665
Q ss_pred cCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcc
Q 007819 206 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE 256 (588)
Q Consensus 206 ~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~ 256 (588)
++ ++..| .|+|++.|+=.+|+-+-.+ .+|.|+.
T Consensus 371 n~--iP~lG---------------IClGmQ~aviE~ARnv~Gl-~~AnS~E 403 (533)
T COG0504 371 NN--IPFLG---------------ICLGMQLAVIEFARNVLGL-EGANSTE 403 (533)
T ss_pred cC--CCEEE---------------EchhHHHHHHHHHHHhcCC-ccCcccc
Confidence 54 56666 4999999998888765444 4666654
No 223
>PTZ00063 histone deacetylase; Provisional
Probab=29.14 E-value=1.3e+02 Score=33.78 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF 227 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 227 (588)
|.+.+.++++.++++++.-+++.||-=+..+.++-..+.-. -+++.|..|+++||..+
T Consensus 274 t~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~-----~~~~~~~~~~~~iP~~~ 331 (436)
T PTZ00063 274 TIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETG-----VILNKHDEMSDQISLND 331 (436)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHH-----HHhCCcccCCccCCCCc
Confidence 67889999999999999999988888787777766666432 45678878999999544
No 224
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=29.12 E-value=3.5e+02 Score=29.02 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=52.6
Q ss_pred HHhcCCCCEEEEEcCchhh--hh--------cCCeEecCHh---hHhchhhcCC--ccccccccCCCCChHHHHHHHHHH
Q 007819 112 LKLHNPKSTLLGFLGGSEG--LF--------AQKTLEVTKE---ILSTYKNQGG--YDMLGRTKDQIRTTEQVNAALTAC 176 (588)
Q Consensus 112 l~~~~~~~~v~Gf~~G~~G--L~--------~~~~~eLt~~---~v~~~~n~GG--s~~lgS~R~k~~~~e~~~~i~~~l 176 (588)
++...-.....||.+|+.| +. ..+|+++..+ .+.-.....| +++.+.+- .-++++++..++.+
T Consensus 46 L~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp--~is~~~~~~~l~~~ 123 (310)
T COG1105 46 LKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGP--EISEAELEQFLEQL 123 (310)
T ss_pred HHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCC--CCCHHHHHHHHHHH
Confidence 3445667899999999999 32 2356655433 3322222221 23332221 22678888888888
Q ss_pred HH-cCCcEEEEecC----cccHHHHHHHHHHHHhcC
Q 007819 177 KN-LNLDGLVIIGG----VTSNTDAAYLAETFAEAK 207 (588)
Q Consensus 177 ~~-l~Id~LviIGG----ddS~~~A~~Lae~~~~~g 207 (588)
++ +.=+.+|++.| .=....-..|.+-++++|
T Consensus 124 ~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g 159 (310)
T COG1105 124 KALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQG 159 (310)
T ss_pred HHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 88 54444455555 333444455556666555
No 225
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.94 E-value=98 Score=32.10 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=49.1
Q ss_pred hhHhchhhcCCccccc--cccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccH----------HHHHHHHHHHHhc--C
Q 007819 142 EILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN----------TDAAYLAETFAEA--K 207 (588)
Q Consensus 142 ~~v~~~~n~GGs~~lg--S~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~----------~~A~~Lae~~~~~--g 207 (588)
.....+++.-|.+.+- ++|+ .+..+++..+..+..+||+.+++++||-+. ..|..|-+..++. .
T Consensus 48 ~~a~~l~~~~g~~~i~Hlt~r~--~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~ 125 (272)
T TIGR00676 48 RIVRRIKKETGIPTVPHLTCIG--ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD 125 (272)
T ss_pred HHHHHHHHhcCCCeeEEeeecC--CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC
Confidence 3445556554554332 3555 367889999999999999999999999872 3466676776654 3
Q ss_pred CCceEEEee
Q 007819 208 CPTKVVGVP 216 (588)
Q Consensus 208 ~~i~VIgVP 216 (588)
..+-+.+.|
T Consensus 126 f~ig~a~~P 134 (272)
T TIGR00676 126 FDIGVAAYP 134 (272)
T ss_pred eeEEEEeCC
Confidence 345556656
No 226
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.34 E-value=2.6e+02 Score=25.86 Aligned_cols=50 Identities=22% Similarity=0.176 Sum_probs=26.4
Q ss_pred hHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCC-cEEEEecCcccH
Q 007819 143 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVTSN 193 (588)
Q Consensus 143 ~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~I-d~LviIGGddS~ 193 (588)
.++.....+. ++++=|-..-.+.+.+..+++.|++.+. +-.|++||.=..
T Consensus 45 ~v~aa~e~~a-dii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~ 95 (132)
T TIGR00640 45 IARQAVEADV-HVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP 95 (132)
T ss_pred HHHHHHHcCC-CEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh
Confidence 3444444433 3554443333345566666666766665 445666665443
No 227
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.23 E-value=1.4e+02 Score=29.18 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=59.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
|||+...-+.|-...++.|+.++++.. +..+.=+ ... .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~~---~~~~~ 43 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAH--GYQVLVC---------------------------------NSD---NDPEK 43 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cCC---CCHHH
Confidence 677776667788888888888887643 2333110 000 12334
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
....++.+...++|++++.+.+.... .+ +.+.+.+ ++||.+ |.++....+ .++|+|-
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d~ 100 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGV-DTVTLDN 100 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCC-CEEEecc
Confidence 45677788889999999998765422 23 3333344 677765 555543322 5677664
No 228
>PLN02335 anthranilate synthase
Probab=28.14 E-value=84 Score=31.64 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHH
Q 007819 176 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (588)
Q Consensus 176 l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 239 (588)
+..++.|++|+-||-++-......-+..++.+-+++|.| .|+||+-.+.
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLG---------------IClG~QlLa~ 106 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFG---------------VCMGLQCIGE 106 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEE---------------ecHHHHHHHH
Confidence 345689999999999988765433444444444566666 4999985444
No 229
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=27.58 E-value=65 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHH
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAA 197 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~ 197 (588)
+..++.+.+++++|| ++.||+.|+..|+
T Consensus 11 ~~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 11 EDPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred HChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 345678999999999 6899999977765
No 230
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=27.46 E-value=5.8e+02 Score=24.76 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.|||++..-..|-...++.|+.++++.. +..+.-+. +. .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~~--g~~~~~~~---------------------------------~~---~~~~ 42 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARAA--GYSLLLAT---------------------------------TD---YDAE 42 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHHC--CCEEEEee---------------------------------CC---CCHH
Confidence 3788887767788889999998887642 33333111 11 1223
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...++++.+...++|++|+..++.... . ..+.+.+.| ++||.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~~~--~-~~~~~~~~~--ipvV~~ 85 (266)
T cd06282 43 READAVETLLRQRVDGLILTVADAATS--P-ALDLLDAER--VPYVLA 85 (266)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCch--H-HHHHHhhCC--CCEEEE
Confidence 445677778889999999987765322 1 224444455 566655
No 231
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.46 E-value=3.1e+02 Score=28.86 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=53.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
.+.|||.=|| -|+-+|.+.+.+.+ |+..++-+-+ +..+ --| .++
T Consensus 5 ~~~IgvFDSG---VGGLsVlrei~~~L----P~e~~iY~~D-----------------------~a~~-PYG-----~ks 48 (269)
T COG0796 5 QPPIGVFDSG---VGGLSVLREIRRQL----PDEDIIYVGD-----------------------TARF-PYG-----EKS 48 (269)
T ss_pred CCeEEEEECC---CCcHHHHHHHHHHC----CCCcEEEEec-----------------------CCCC-CCC-----CCC
Confidence 4689999988 48888998887654 4444443321 2222 112 233
Q ss_pred hH----HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 166 TE----QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 166 ~e----~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+| -..++++.+.+.+++.|||-.-.-|.-.. +++ +..++++||||
T Consensus 49 ~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al----~~L-R~~~~iPVvGv 97 (269)
T COG0796 49 EEEIRERTLEIVDFLLERGIKALVIACNTASAVAL----EDL-REKFDIPVVGV 97 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHH----HHH-HHhCCCCEEEe
Confidence 33 33557788888999999997643332222 222 33557899987
No 232
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.34 E-value=1.5e+02 Score=29.08 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
..+.++.+...++|++++.+.+.+. .. .+.+.+.| ++||.+ |.|.....+ .++|+|
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~~~---~~-~~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 98 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSS---EL-AEECRRNG--IPVVLI----NRYVDGPGV-DAVCSD 98 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCH---HH-HHHHhhcC--CCEEEE----CCccCCCCC-CEEEEC
Confidence 3456677888999999998876442 12 33344444 688876 444433222 467766
No 233
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=27.27 E-value=1.3e+02 Score=28.99 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHcCCcEEEEecCcccHHH---HHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHH
Q 007819 177 KNLNLDGLVIIGGVTSNTD---AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (588)
Q Consensus 177 ~~l~Id~LviIGGddS~~~---A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 242 (588)
...+.|++|+-||.++... ...+.+++.+++ ++|.|| |.|+...+..+.
T Consensus 36 ~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI---------------C~G~Q~l~~~~G 87 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI---------------CLGHQLLALALG 87 (178)
T ss_pred hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE---------------CHHHHHHHHHcC
Confidence 4458999999999876443 223344444443 566664 888887766654
No 234
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=27.26 E-value=2.1e+02 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
+.+...++++.+...++|++++.+-+.. .....+ +.+.+.+ ++||.+ |.+........+++.|
T Consensus 39 ~~~~q~~~i~~l~~~~vDgIIi~~~~~~-~~~~~l-~~~~~~~--iPvV~~----d~~~~~~~~~~~V~~d 101 (302)
T TIGR02634 39 NEAKQISQIENLIARGVDVLVIIPQNGQ-VLSNAV-QEAKDEG--IKVVAY----DRLINDADIDFYLSFD 101 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChh-HHHHHH-HHHHHCC--CeEEEe----cCcCCCCCccEEEecC
Confidence 3445567899999999999999875532 112223 3444444 788865 4444333222355544
No 235
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.00 E-value=4.2e+02 Score=23.00 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=56.7
Q ss_pred EEEEEecCCCccc-HHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 88 RVGIVFCGRQSPG-GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 88 ~IgIv~sGG~aPG-~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
++.+...++..|- +...|+++++. .|.+|.-+ +. ..+.+.+.........|++|-|-....+-
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~-----~G~~v~~~-d~----------~~~~~~l~~~~~~~~pd~V~iS~~~~~~~ 65 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK-----AGHEVDIL-DA----------NVPPEELVEALRAERPDVVGISVSMTPNL 65 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH-----TTBEEEEE-ES----------SB-HHHHHHHHHHTTCSEEEEEESSSTHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH-----CCCeEEEE-CC----------CCCHHHHHHHHhcCCCcEEEEEccCcCcH
Confidence 6778888888744 44556666532 26666522 11 11113333333333556777665333355
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAY 198 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~ 198 (588)
....++++.+++.+=+..+++||-........
T Consensus 66 ~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~ 97 (121)
T PF02310_consen 66 PEAKRLARAIKERNPNIPIVVGGPHATADPEE 97 (121)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEESSSGHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchhcChHH
Confidence 66778888889888999999999884444433
No 236
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=26.70 E-value=4.9e+02 Score=26.24 Aligned_cols=112 Identities=18% Similarity=0.058 Sum_probs=59.8
Q ss_pred EEEEEecCCC-cccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 88 RVGIVFCGRQ-SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 88 ~IgIv~sGG~-aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
||+++....+ .-|+..+++.+.+.+.+......++....+........ ..++...+ .+. ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-------------~~~~~~~~--~~~---~~ 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG-------------EQEVVRVI--VLD---NP 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC-------------cccceeee--ecC---Cc
Confidence 5788877766 67999999999999976655555554443322111110 00111011 111 22
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHH--HHHHHHHHHHhcCCCceEEEeeecc
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNT--DAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~--~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
..+..+.+.+++.+.|.+++.-..+... .+..+.... +..++++|...-..
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~h~~ 115 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLL--RGLGIPVVVTLHTV 115 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHH--hhcCCCEEEEEecC
Confidence 3455677788899999877754332221 122222111 23357777766444
No 237
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.54 E-value=1.4e+02 Score=31.51 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=58.0
Q ss_pred EEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHH-HHH
Q 007819 120 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTD-AAY 198 (588)
Q Consensus 120 ~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~-A~~ 198 (588)
++.-|++-..| +++....-.+....+...|.. ... ..+. ...+..++++.+...+.|.+|+.|||||... ++-
T Consensus 4 ~~~~i~Np~sG--~~~~~~~~~~~~~~l~~~g~~-~~~-~~t~--~~g~a~~~a~~a~~~~~D~via~GGDGTv~eving 77 (301)
T COG1597 4 KALLIYNPTSG--KGKAKKLLREVEELLEEAGHE-LSV-RVTE--EAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANG 77 (301)
T ss_pred eEEEEEccccc--ccchhhHHHHHHHHHHhcCCe-EEE-EEee--cCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 45556666666 333222333344555556554 211 1111 1134566677777779999999999999874 455
Q ss_pred HHHHHHhcCCCce-EEEeeecccCCCCCCCCCCCCCchh
Q 007819 199 LAETFAEAKCPTK-VVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 199 Lae~~~~~g~~i~-VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
|++ .+ .. +--||.===||+. .++|...
T Consensus 78 l~~----~~--~~~LgilP~GT~NdfA-----r~Lgip~ 105 (301)
T COG1597 78 LAG----TD--DPPLGILPGGTANDFA-----RALGIPL 105 (301)
T ss_pred Hhc----CC--CCceEEecCCchHHHH-----HHcCCCc
Confidence 544 33 34 6677876667775 4555554
No 238
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=26.42 E-value=1.3e+02 Score=32.89 Aligned_cols=39 Identities=36% Similarity=0.364 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~ 203 (588)
|...+.++++..++-+.|.+|-|||--++++|...+-+.
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~A 150 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLA 150 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhh
Confidence 556788899999999999999999999998887776554
No 239
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=26.33 E-value=3e+02 Score=26.85 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=50.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
|||++..-..|-.+..+.|+-++++.. |.++ ++..+. .+++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~---------------------------------~~~~~~---~~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN--GYQM---------------------------------LLMNTN---FSIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC--CCEE---------------------------------EEEeCC---CCHHH
Confidence 678887777777778888887776532 2222 111111 12344
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
..+.++.+...++|++|+.+.+.+.. +.+.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE
Confidence 45666778889999999998765422 223334444 677665
No 240
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=26.18 E-value=1.7e+02 Score=31.23 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHc--CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l--~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.++.+. ..+||-.
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~--~kPVVlT 111 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEN--DKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcC--CCCEEEE
Confidence 567777777766554 699999999999998866655555443 3455544
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.73 E-value=6.7e+02 Score=26.92 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=56.9
Q ss_pred HcCCcEEEEecCcccHHH--HHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH-------H
Q 007819 178 NLNLDGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN-------V 248 (588)
Q Consensus 178 ~l~Id~LviIGGddS~~~--A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n-------l 248 (588)
..+ ..|++.|..|+=.+ |+.++.++.++|. .|+.++ +...+..+-.. .
T Consensus 181 ~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~--~V~y~t--------------------~~~l~~~l~~~~~~~~~~~ 237 (329)
T PRK06835 181 KNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGK--SVIYRT--------------------ADELIEILREIRFNNDKEL 237 (329)
T ss_pred ccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCC--eEEEEE--------------------HHHHHHHHHHHHhccchhH
Confidence 344 88999998777665 7777888777764 555544 22221111110 0
Q ss_pred H--HHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCC
Q 007819 249 C--TDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 301 (588)
Q Consensus 249 ~--~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl 301 (588)
. .+....--++|+.++|....+-.. .+.+-..|-.|+..++. +|+-..-.
T Consensus 238 ~~~~~~l~~~DLLIIDDlG~e~~t~~~-~~~Lf~iin~R~~~~k~--tIiTSNl~ 289 (329)
T PRK06835 238 EEVYDLLINCDLLIIDDLGTEKITEFS-KSELFNLINKRLLRQKK--MIISTNLS 289 (329)
T ss_pred HHHHHHhccCCEEEEeccCCCCCCHHH-HHHHHHHHHHHHHCCCC--EEEECCCC
Confidence 0 011111128999999876555322 46777888889887664 55555443
No 242
>PHA02728 uncharacterized protein; Provisional
Probab=25.69 E-value=36 Score=31.51 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.4
Q ss_pred EeeecccCCCCCCC
Q 007819 214 GVPVTLNGDLKNQF 227 (588)
Q Consensus 214 gVPKTIDNDL~~~~ 227 (588)
-||-|+||||+++.
T Consensus 43 lvpytvdndlpnpn 56 (184)
T PHA02728 43 LVPYTVDNDLPNPN 56 (184)
T ss_pred ccceeccCCCCCCC
Confidence 48999999999875
No 243
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.55 E-value=66 Score=28.93 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=60.3
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||.|+-+|-. -.-++++++++ +.+.+.+..=.+- .-......+.....|+.. +.+..
T Consensus 3 kkvLIanrGei-------a~r~~ra~r~~--Gi~tv~v~s~~d~------~s~~~~~ad~~~~~~~~~---~~~~y---- 60 (110)
T PF00289_consen 3 KKVLIANRGEI-------AVRIIRALREL--GIETVAVNSNPDT------VSTHVDMADEAYFEPPGP---SPESY---- 60 (110)
T ss_dssp SEEEESS-HHH-------HHHHHHHHHHT--TSEEEEEEEGGGT------TGHHHHHSSEEEEEESSS---GGGTT----
T ss_pred CEEEEECCCHH-------HHHHHHHHHHh--CCcceeccCchhc------ccccccccccceecCcch---hhhhh----
Confidence 46666666543 34455566654 6666666632211 111112223333333220 11122
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
-+.+++++.+++.++++ +.||-|-+.-...|++.+.+.| +.+||-+
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~g--i~fiGp~ 106 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAG--IIFIGPS 106 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCC--CEEECcC
Confidence 24678889999997666 5699999999999999998777 6777743
No 244
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.44 E-value=1.2e+02 Score=27.70 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCC
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 223 (588)
-.+++.....++|.+|++.||+-+.-+. +.++++|..+-|++.+.....+|
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccCccChHHH
Confidence 3456666667999999999999776654 44555788888888873443333
No 245
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.19 E-value=5.7e+02 Score=23.92 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=58.8
Q ss_pred EEEEEecCCCcccHH-HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHh-hHhchhhcCCccccccccCCCCC
Q 007819 88 RVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKE-ILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 88 ~IgIv~sGG~aPG~N-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~-~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
+|.+-+.||+.=-+. |++..+++ ..|.+|+= .| ...+.+ .++..... +.+++|-|--.-.+
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~-----~~GfeVi~-----LG------~~v~~e~~v~aa~~~-~adiVglS~l~~~~ 65 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFT-----NAGFNVVN-----LG------VLSPQEEFIKAAIET-KADAILVSSLYGHG 65 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHH-----HCCCEEEE-----CC------CCCCHHHHHHHHHHc-CCCEEEEecccccC
Confidence 566677777654332 33333332 34677751 12 234443 45555544 55677755544456
Q ss_pred hHHHHHHHHHHHHcCC-cEEEEecCcccHHH--HHHHHHHHHhcC
Q 007819 166 TEQVNAALTACKNLNL-DGLVIIGGVTSNTD--AAYLAETFAEAK 207 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~I-d~LviIGGddS~~~--A~~Lae~~~~~g 207 (588)
.+.+.+.++.|++.++ +-.|++||.-..-. .....+.+++.|
T Consensus 66 ~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G 110 (134)
T TIGR01501 66 EIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG 110 (134)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC
Confidence 7789999999999999 44577999754322 222334455566
No 246
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.13 E-value=3.7e+02 Score=26.36 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+.....++.+...++|+++++|.+.+.... +.++++| ++||.+
T Consensus 42 ~~~~~~~~~l~~~~vdgiii~~~~~~~~~~----~~l~~~~--iPvv~~ 84 (268)
T cd06273 42 DREYAQARKLLERGVDGLALIGLDHSPALL----DLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 444556777888899999999876543222 2333344 788875
No 247
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=25.06 E-value=1.2e+02 Score=32.20 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHc--CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l--~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.+++. +.|++||+-|.|||...+.+-..+.+ +.+.+||-.=
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~-~l~kPVVlTG 107 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLD-NLDKPVVLTG 107 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEE-S-SSEEEEE-
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhc-CCCCCEEEeC
Confidence 556666666666555 69999999999999986655555443 3346777653
No 248
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=24.94 E-value=96 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~ 203 (588)
.-+.+.++++.|++.+||.|+-+||--..+.+..+|-..
T Consensus 70 ~~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a 108 (384)
T COG1979 70 RLETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAA 108 (384)
T ss_pred hHHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhhc
Confidence 346789999999999999999999999999988887653
No 249
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.91 E-value=1.8e+02 Score=28.63 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
++...+.+.+...++|++++.+.+.. . . .+.+.+.+ ++||.+ |.+.+...+ .++++|-
T Consensus 45 ~~~~~~~~~l~~~~vdgiii~~~~~~-~---~-~~~l~~~~--ipvV~~----~~~~~~~~~-~~V~~d~ 102 (268)
T cd06277 45 EEEFELPSFLEDGKVDGIILLGGIST-E---Y-IKEIKELG--IPFVLV----DHYIPNEKA-DCVLTDN 102 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCh-H---H-HHHHhhcC--CCEEEE----ccCCCCCCC-CEEEecc
Confidence 33456677788899999999986543 1 1 23344444 788854 555543221 3455553
No 250
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.68 E-value=1.5e+02 Score=26.79 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=48.3
Q ss_pred CCeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHHHhcCC
Q 007819 134 QKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT-SNTDAAYLAETFAEAKC 208 (588)
Q Consensus 134 ~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGdd-S~~~A~~Lae~~~~~g~ 208 (588)
++.-++--..+..+...+|+..+-.+-.-+ .+.+++..++.+-|.+++-+-++ +...+..+.+.+++.+.
T Consensus 9 gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp-----~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 9 LDGHDRGAKVIARALRDAGFEVIYTGLRQT-----PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGA 79 (122)
T ss_pred CChhHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCC
Confidence 333444455677788888987665554332 34577888899999988887766 44556777788888766
No 251
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=24.68 E-value=2.5e+02 Score=29.65 Aligned_cols=112 Identities=16% Similarity=0.062 Sum_probs=56.8
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHH
Q 007819 91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVN 170 (588)
Q Consensus 91 Iv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~ 170 (588)
|++++|-++ +|=..+-+.+.+++.+++.+++|+- | .++-+. .++-- -....+ +..|+ ...-+.-......+.
T Consensus 4 i~i~~Ggt~-G~i~~a~l~~~L~~~~~~~~~~~~~-~-~~~~~~-~~~~~-~~~~~l-~~~g~--~~~~~~~~~~~~~~~ 75 (380)
T PRK00025 4 IAIVAGEVS-GDLLGAGLIRALKARAPNLEFVGVG-G-PRMQAA-GCESL-FDMEEL-AVMGL--VEVLPRLPRLLKIRR 75 (380)
T ss_pred EEEEecCcC-HHHHHHHHHHHHHhcCCCcEEEEEc-c-HHHHhC-CCccc-cCHHHh-hhccH--HHHHHHHHHHHHHHH
Confidence 334444444 3444444888888877888999884 3 354322 22110 011111 12232 000011111124567
Q ss_pred HHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 171 ~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++.+.+++.+.|.++..|-.+.....+. .+.+.| ++++..
T Consensus 76 ~~~~~l~~~kPdivi~~~~~~~~~~~a~---~a~~~~--ip~i~~ 115 (380)
T PRK00025 76 RLKRRLLAEPPDVFIGIDAPDFNLRLEK---KLRKAG--IPTIHY 115 (380)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHH---HHHHCC--CCEEEE
Confidence 7888999999999999985444433232 223334 666643
No 252
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=24.63 E-value=1.5e+02 Score=26.70 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=45.8
Q ss_pred EEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 183 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 183 ~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
..|+.|||-+-..+..+|..+.-..++.-++-.|+. |++. -+..-.|+-++-+....+.
T Consensus 52 ~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~--~~~~--vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 52 RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD--NRMT--IVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC--CceE--EEEEEeCCCCHHHHHHHHH
Confidence 489999999999999999999888888877777874 5442 2336788888887776554
No 253
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=24.60 E-value=4.8e+02 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCc
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGV 190 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGd 190 (588)
++....++.+...++||+++.+.+
T Consensus 44 ~~~~~~i~~l~~~~vDgiIi~~~~ 67 (295)
T TIGR02955 44 DKQLAQIEQCKSWGADAILLGTVS 67 (295)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Confidence 445568888999999999998755
No 254
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=24.58 E-value=1.9e+02 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHH----cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKN----LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~----l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+++++.++.+.+++ -+.||+||.-|-|||...+.+-.+..+ +.+.+||-.
T Consensus 58 t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~-~l~kPVVlT 111 (323)
T smart00870 58 TPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLD-SLDKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhh-cCCCCEEEE
Confidence 56777777777765 479999999999999886665554443 334566654
No 255
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=24.57 E-value=1.9e+02 Score=32.64 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHH--HHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNT--DAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~--~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 242 (588)
++..+.++-+.++ .-|++++-||.|+-- +.-.-++|+++++ ++..| .|+|.+-|+=.+|
T Consensus 350 ~~~~~~~aW~~l~--~adGilvPGGFG~RGveG~i~Aak~ARen~--iP~LG---------------iCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 350 DPRKYHAAWQKLK--SADGILVPGGFGDRGVEGKILAAKWARENK--IPFLG---------------ICLGMQLAVIEFA 410 (585)
T ss_pred ChhHHHHHHHHhc--cCCeEEeCCcccccchhHHHHHHHHHHhcC--CCeEe---------------eehhhhHHHHHHH
Confidence 4556777777776 789999999999743 3333345555543 45554 4999999998888
Q ss_pred HHHHHHHHHhhhc
Q 007819 243 QLISNVCTDALSA 255 (588)
Q Consensus 243 e~I~nl~~dA~S~ 255 (588)
+.|-.+. ||.|.
T Consensus 411 RnvLg~~-dAnSt 422 (585)
T KOG2387|consen 411 RNVLGLK-DANST 422 (585)
T ss_pred HHhhCCC-CCCcc
Confidence 7766553 56543
No 256
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.45 E-value=3.3e+02 Score=26.79 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=54.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+|||+...-..|=.+.++.|+.+.++.. +.++. +..+. .+++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKAL--GYDAV---------------------------------ELSAE---NSAK 42 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhc--CCeEE---------------------------------EecCC---CCHH
Confidence 4677776666777777777777776532 22221 10111 1233
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
....+++.+...++|++|+.+.+ +......| +.+.+.| ++||.+ |.+........++|+|
T Consensus 43 ~~~~~i~~~~~~~~dgiii~~~~-~~~~~~~l-~~~~~~~--ipvV~~----~~~~~~~~~~~~v~~d 102 (277)
T cd06319 43 KELENLRTAIDKGVSGIIISPTN-SSAAVTLL-KLAAQAK--IPVVIA----DIGAEGGDYVSYIKSD 102 (277)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCc-hhhhHHHH-HHHHHCC--CCEEEE----ecCCCCCceEEEEeec
Confidence 33456667777899999876544 32222223 3344444 677654 4433221111466666
No 257
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=24.37 E-value=3.1e+02 Score=22.70 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=35.4
Q ss_pred cccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 156 LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 156 lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+.-+|+- .+.+-+..+++.+.+..-+.+++-||.. ++|-.||+...+.. +++++..|
T Consensus 8 i~GgR~~-~D~~~i~~~Ld~~~~~~~~~~lvhGga~--~GaD~iA~~wA~~~-gv~~~~~~ 64 (71)
T PF10686_consen 8 ITGGRDW-TDHELIWAALDKVHARHPDMVLVHGGAP--KGADRIAARWARER-GVPVIRFP 64 (71)
T ss_pred EEECCcc-ccHHHHHHHHHHHHHhCCCEEEEECCCC--CCHHHHHHHHHHHC-CCeeEEeC
Confidence 3334543 3445566667767777778888888873 35666666554433 46777666
No 258
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=24.30 E-value=42 Score=30.34 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCC
Q 007819 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 171 ~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 223 (588)
.+.+.+.+...|.+|++-||+-+.-+. +.++++|.++-|++.|.....+|
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~~L 135 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASEAL 135 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-HHH
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCHHH
Confidence 344445445679999999998766544 55566788888888755554444
No 259
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=24.06 E-value=6.6e+02 Score=27.15 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcC---CcEEEEe----cCcccHHHHHHHHHHHHhcC--CCceEEEee
Q 007819 167 EQVNAALTACKNLN---LDGLVII----GGVTSNTDAAYLAETFAEAK--CPTKVVGVP 216 (588)
Q Consensus 167 e~~~~i~~~l~~l~---Id~LviI----GGddS~~~A~~Lae~~~~~g--~~i~VIgVP 216 (588)
+..+++.+.+++.. .|+++++ ||.||- .+..|++.+++.. .-+.++..|
T Consensus 81 e~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG-~~p~iae~lke~~~~~~~~iv~~P 138 (349)
T cd02202 81 EDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSG-GAPVLAKELKERYEEPVYALGVLP 138 (349)
T ss_pred HHHHHHHHHHhccccccccEEEEecccCCCcccc-HHHHHHHHHHHhCCccEEEEEEec
Confidence 44555666666544 8999987 455554 3466778877763 234555555
No 260
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=23.95 E-value=5.3e+02 Score=25.07 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=50.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
||||..--..|-...++.|+-+.++.. +..+ ++.... .+++.
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~--g~~v---------------------------------~~~~~~---~~~~~ 43 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKEL--GYEL---------------------------------TVLDAQ---NDAAK 43 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHc--CceE---------------------------------EecCCC---CCHHH
Confidence 677777677888888888888877642 2221 111111 13344
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
..++++.+...++||+++.+ .++......|.+ +.+. +++||.+
T Consensus 44 ~~~~~~~~~~~~~dgii~~~-~~~~~~~~~l~~-l~~~--~ipvv~~ 86 (268)
T cd06323 44 QLNDIEDLITRGVDAIIINP-TDSDAVVPAVKA-ANEA--GIPVFTI 86 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcC-CChHHHHHHHHH-HHHC--CCcEEEE
Confidence 55677778888999999864 443322233433 3334 4778777
No 261
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=23.63 E-value=3.4e+02 Score=30.06 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=54.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccccc-CCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R-~k~~ 164 (588)
.+||.||=+||- =|+.+|.+.+ .....+||...+. .|.... +... ..+
T Consensus 4 ~~kvLviG~g~r---ehal~~~~~~----~~~~~~~~~~pgn-~g~~~~----------------------~~~~~~~~- 52 (426)
T PRK13789 4 KLKVLLIGSGGR---ESAIAFALRK----SNLLSELKVFPGN-GGFPDD----------------------ELLPADSF- 52 (426)
T ss_pred CcEEEEECCCHH---HHHHHHHHHh----CCCCCEEEEECCc-hHHhcc----------------------ccccccCc-
Confidence 589999999984 5777777753 3335688886632 232210 0000 011
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+..+.+.+++.++++++|.+|+ |..+- .+.-+++.+.+.| ++++|-
T Consensus 53 ~~~d~~~l~~~a~~~~iD~Vv~-g~E~~--l~~glad~~~~~G--ip~~Gp 98 (426)
T PRK13789 53 SILDKSSVQSFLKSNPFDLIVV-GPEDP--LVAGFADWAAELG--IPCFGP 98 (426)
T ss_pred CcCCHHHHHHHHHHcCCCEEEE-CCchH--HHHHHHHHHHHcC--CCcCCC
Confidence 2245677788899999997775 55443 2233445555555 455543
No 262
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=23.60 E-value=7.3e+02 Score=27.04 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=63.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEc--CchhhhhcCCeEecCHh----hHhchhhc-CCccccccc
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL--GGSEGLFAQKTLEVTKE----ILSTYKNQ-GGYDMLGRT 159 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~--~G~~GL~~~~~~eLt~~----~v~~~~n~-GGs~~lgS~ 159 (588)
.+.=|+.+|.+++..+ ..+.+.+.. .|..|.+-- .|.+.+ ..+ ++-+.+ ..+.|.+. -.+ ++
T Consensus 232 ~~~RIl~tG~~~~~~~---~k~~~~iE~--~G~~VV~dd~c~g~r~~-~~~-v~e~~dp~~aLA~~Yl~~~~~c----~~ 300 (380)
T TIGR02263 232 DNCRVIICGMFCEQPP---LNLIKSIEL--SGCYIVDDDFIIVHRFE-NND-VALAGDPLQNLALAFLHDSIST----AA 300 (380)
T ss_pred CCCEEEEECcCCCCch---HHHHHHHHH--CCCEEEEecCCccchhh-hcc-CCCCCCHHHHHHHHHhhCCCCC----cc
Confidence 3456788887776664 344443432 256666652 343322 000 111211 23444322 111 11
Q ss_pred cCCCCChHHHHHHHHHHHHcCCcEEEEec--CcccH-HHHHHHHHHHHhcCCCceEEEe
Q 007819 160 KDQIRTTEQVNAALTACKNLNLDGLVIIG--GVTSN-TDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 160 R~k~~~~e~~~~i~~~l~~l~Id~LviIG--GddS~-~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...+..+.-.+.+.+.++++++||+|..- |-++. -....|.+++.+.| |+++.|
T Consensus 301 ~~~~~~~~R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~G--IP~L~i 357 (380)
T TIGR02263 301 KYDDDEADKGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHG--IPQIAF 357 (380)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCC--CCEEEE
Confidence 22222234678899999999999999863 44444 34566678887665 788887
No 263
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=23.46 E-value=2.6e+02 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=27.5
Q ss_pred cCCeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCc
Q 007819 133 AQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGV 190 (588)
Q Consensus 133 ~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGd 190 (588)
...+.-+....++.+...||..++=.. . .+++.++. .++ .+|||++-||.
T Consensus 19 ~~~~~~i~~~Yv~~i~~aG~~pv~ip~-~--~~~~~~~~---~l~--~idGlll~GG~ 68 (217)
T PF07722_consen 19 GYPRSYIAASYVKAIEAAGGRPVPIPY-D--ADDEELDE---LLD--RIDGLLLPGGG 68 (217)
T ss_dssp HC-SEEEEHHHHHHHHHTT-EEEEE-S-S----HHHHHH---HHH--CSSEEEE---S
T ss_pred chhHHHHhHHHHHHHHHcCCEEEEEcc-C--CCHHHHHH---HHh--hcCEEEEcCCc
Confidence 445556777888889999997443211 1 13344443 333 79999999999
No 264
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.42 E-value=5.4e+02 Score=25.40 Aligned_cols=49 Identities=29% Similarity=0.137 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
+.++....++.+...++|++++.+.+.+. ....+ +.+.++| ++||.+-.
T Consensus 45 ~~~~~~~~~~~l~~~~vDgiii~~~~~~~-~~~~i-~~~~~~g--IpvV~~d~ 93 (274)
T cd06311 45 DTEQQNAQQDLLINRKIDALVILPFESAP-LTQPV-AKAKKAG--IFVVVVDR 93 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCchh-hHHHH-HHHHHCC--CeEEEEcC
Confidence 34566788899999999999998765432 11223 3334455 78887643
No 265
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=23.33 E-value=6.9e+02 Score=28.04 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=89.5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.+||.-. ||-=-+||.+.++.++.. +.-| .++-|...|+.+ ||. -| .|+.
T Consensus 16 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY--TG------mtP~ 65 (426)
T PRK15458 16 TNGIYAV---CSAHPLVLEAAIRYALAN--DSPL--------------LIEATSNQVDQF---GGY--TG------MTPA 65 (426)
T ss_pred CceEEEe---cCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc--CC------CCHH
Confidence 4465543 444457888877766532 3333 368888889887 775 22 3667
Q ss_pred HHHHH-HHHHHHcCCcE-EEEecCc-------------ccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCC
Q 007819 168 QVNAA-LTACKNLNLDG-LVIIGGV-------------TSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 232 (588)
Q Consensus 168 ~~~~i-~~~l~~l~Id~-LviIGGd-------------dS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~ 232 (588)
+|... .+..++.+++. .+++||| ..|..|..|.+.+.+.|+ .-|++=.|++ ..+.. ..+
T Consensus 66 dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--cagdp--~pL 139 (426)
T PRK15458 66 DFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGF--KKIHLDCSMS--CADDP--IPL 139 (426)
T ss_pred HHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--CCCCC--CCC
Confidence 76554 46677889998 9999997 357777777777777785 7788877777 44444 567
Q ss_pred CchhHHHHHHHHHHHHHHHh
Q 007819 233 GFDTICKVNSQLISNVCTDA 252 (588)
Q Consensus 233 GFdTA~k~~ae~I~nl~~dA 252 (588)
.=+|.++-.++++.-.-..+
T Consensus 140 ~d~~vA~Raa~L~~~aE~~a 159 (426)
T PRK15458 140 TDEIVAERAARLAKIAEETC 159 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 77899999998887555554
No 266
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=23.29 E-value=1.7e+02 Score=31.67 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHc----CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l----~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+++++..+.+.+++. +.|++||.-|-|||...+.+-.+..+. +.+||-.
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~~--~kPVVlT 138 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTVKS--DKPVVIV 138 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHHHHcCC--CCCEEEE
Confidence 556666666655543 699999999999999877655554433 4566654
No 267
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=23.24 E-value=4.1e+02 Score=24.11 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=54.7
Q ss_pred EEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH-HHHHhhhccceEEec
Q 007819 184 LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN-VCTDALSAEKVILGE 262 (588)
Q Consensus 184 LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n-l~~dA~S~~kvlI~E 262 (588)
|++|=||+...--..||+. .++| ++++.|-|+-|+.++. -+...+.++. +...+.++-=+-|-|
T Consensus 1 ~~lIR~dn~~K~~~ALaDl-eRh~-~l~i~gkPrii~p~~A-------------D~i~~~ilg~~lr~~~k~A~lv~v~~ 65 (107)
T PF04009_consen 1 LILIRADNYDKILNALADL-ERHG-GLKIRGKPRIIPPEYA-------------DWILEKILGEPLRKKCKAAALVKVEE 65 (107)
T ss_pred CeEEecCCHHHHHHHHHHH-HHhc-CCeEecCCcccChHHH-------------HHHHHHHhCCccccccchheEEEecC
Confidence 5788889888888888874 3345 6899999999988774 2334444444 444443332222222
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCC
Q 007819 263 EVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 301 (588)
Q Consensus 263 e~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl 301 (588)
. ...+|-+-.+-.-+-+||+|||.-
T Consensus 66 ~--------------~~~aI~~lrkIHPPAHIiVis~~~ 90 (107)
T PF04009_consen 66 D--------------ATKAIDRLRKIHPPAHIIVISPRH 90 (107)
T ss_pred C--------------chhHHHHHhhcCCCceEEEECCCc
Confidence 1 122333323345678999999976
No 268
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.16 E-value=4.2e+02 Score=25.79 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=53.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHH
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~ 168 (588)
||++......|-...++.|+.++++.. +++++ +..+. .+++.
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREA--GYGVL---------------------------------LGDTR---SDPER 43 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHc--CCeEE---------------------------------EecCC---CChHH
Confidence 677887777888888999998887642 34332 00111 12344
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
...+++.+...++|++++.+++.... +.+.. .. .++||.+-.
T Consensus 44 ~~~~~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~--~ipvv~~~~ 85 (267)
T cd06284 44 EQEYLDLLRRKQADGIILLDGSLPPT----ALTAL-AK--LPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHH----HHHHH-hc--CCCEEEEec
Confidence 45678889999999999988765533 21222 23 478887743
No 269
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.76 E-value=7.8e+02 Score=24.67 Aligned_cols=87 Identities=20% Similarity=0.108 Sum_probs=49.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
|||++...-..|-.+.++.|+.+.++.. +.++.- +..+. .+++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~--------------------------------~~~~~---~~~~ 43 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKL--GIEVVA--------------------------------TTDAQ---FDPA 43 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHc--CCEEEE--------------------------------ecCCC---CCHH
Confidence 4777776666677777777777766532 222210 11111 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...+.++.+.+.++|++++.+.+.... ...+ +.+.++| ++||.+
T Consensus 44 ~~~~~l~~~~~~~~dgiii~~~~~~~~-~~~i-~~~~~~~--iPvV~~ 87 (294)
T cd06316 44 KQVADIETTISQKPDIIISIPVDPVST-AAAY-KKVAEAG--IKLVFM 87 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCchhh-hHHH-HHHHHcC--CcEEEe
Confidence 455677777788999999876543211 2223 3344455 677754
No 270
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=22.76 E-value=2.4e+02 Score=27.95 Aligned_cols=102 Identities=17% Similarity=0.026 Sum_probs=55.9
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+||+|.. -..|-.+.++.|+-+.++++ +..+.-+ .++. .+.+
T Consensus 1 ~i~~v~~-~~~~~~~~~~~gi~~~~~~~--g~~~~~~--------------------------------~~~~---~~~~ 42 (271)
T cd06314 1 TIAVVTN-GASPFWKIAEAGVKAAGKEL--GVDVEFV--------------------------------VPQQ---GTVN 42 (271)
T ss_pred CeEEEcC-CCcHHHHHHHHHHHHHHHHc--CCeEEEe--------------------------------CCCC---CCHH
Confidence 3666663 34677788888888777643 3333211 0111 1334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
...+.++.+...++|++++...+. ......+.+ +.+ +++||.+ |++......-.++++|-
T Consensus 43 ~~~~~i~~l~~~~vDgiIi~~~~~-~~~~~~l~~-~~~---~ipvV~~----~~~~~~~~~~~~V~~D~ 102 (271)
T cd06314 43 AQLRMLEDLIAEGVDGIAISPIDP-KAVIPALNK-AAA---GIKLITT----DSDAPDSGRYVYIGTDN 102 (271)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCh-hHhHHHHHH-Hhc---CCCEEEe----cCCCCccceeEEEccCh
Confidence 455677888899999999997652 212233333 333 4677775 44443211113566663
No 271
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=22.63 E-value=8.3e+02 Score=24.90 Aligned_cols=88 Identities=7% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+...|||++..-..|-.+.++.|+-+.++.. +..+. +..+. .
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 101 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQR--GYQLL---------------------------------IACSD---D 101 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4568999987766777788888887776532 22221 10011 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+.+...++++.+...++||+++.+.+..... .+ +.+.+.+ ++||.|
T Consensus 102 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~-~~l~~~~--iPvV~v 147 (328)
T PRK11303 102 QPDNEMRCAEHLLQRQVDALIVSTSLPPEHP--FY-QRLQNDG--LPIIAL 147 (328)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCChH--HH-HHHHhcC--CCEEEE
Confidence 2233456777888899999999887543221 12 2333344 677754
No 272
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.62 E-value=3.5e+02 Score=28.41 Aligned_cols=121 Identities=9% Similarity=0.060 Sum_probs=56.8
Q ss_pred ChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCch
Q 007819 49 DTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGS 128 (588)
Q Consensus 49 ~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~ 128 (588)
+.+.+++.|..+...-.+.+.- ....+++||+|+.||+ |- -+..++++.+...-+.+|.++.-
T Consensus 62 ~~~~L~~~L~~l~~~l~l~i~l----------~~~~~~~ri~vl~Sg~---gs--nl~al~~~~~~~~~~~~i~~vis-- 124 (286)
T PRK06027 62 NLETLRADFAALAEEFEMDWRL----------LDSAERKRVVILVSKE---DH--CLGDLLWRWRSGELPVEIAAVIS-- 124 (286)
T ss_pred CHHHHHHHHHHHHHHhCCEEEE----------cccccCcEEEEEEcCC---CC--CHHHHHHHHHcCCCCcEEEEEEE--
Confidence 3556776666554322222211 1234678999999999 22 24555555443222345554432
Q ss_pred hhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHH
Q 007819 129 EGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 199 (588)
Q Consensus 129 ~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~L 199 (588)
++ ..+..+...=|-...--...+ .+.+++ ..+.+.+++++.|.+|+.| -.-.-....|
T Consensus 125 -----n~------~~~~~lA~~~gIp~~~~~~~~-~~~~~~~~~~~~~l~~~~~Dlivlag-y~~il~~~~l 183 (286)
T PRK06027 125 -----NH------DDLRSLVERFGIPFHHVPVTK-ETKAEAEARLLELIDEYQPDLVVLAR-YMQILSPDFV 183 (286)
T ss_pred -----cC------hhHHHHHHHhCCCEEEeccCc-cccchhHHHHHHHHHHhCCCEEEEec-chhhcCHHHH
Confidence 11 112222222222121111111 122223 3568889999999665554 4433333333
No 273
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.61 E-value=4.1e+02 Score=25.17 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++++++++++.+.+. +-++++|--+|...|..++..+...| +.+..+
T Consensus 16 ~~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g--~~~~~~ 62 (179)
T TIGR03127 16 DEEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRLMHLG--FNVYVV 62 (179)
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHHhCC--CeEEEe
Confidence 568899999998764 57888887788777777777776555 455544
No 274
>PRK07094 biotin synthase; Provisional
Probab=22.53 E-value=8.8e+02 Score=25.32 Aligned_cols=105 Identities=17% Similarity=0.080 Sum_probs=64.2
Q ss_pred EEecCCCcccH-HHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccccc---------
Q 007819 91 IVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK--------- 160 (588)
Q Consensus 91 Iv~sGG~aPG~-NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R--------- 160 (588)
|.++||..|-. ..-+..+++.++.. ++..+- +.-| .++++.+..++..|=. .+.-+-
T Consensus 90 i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~-~~~g----------~~~~e~l~~Lk~aG~~-~v~~glEs~~~~~~~ 156 (323)
T PRK07094 90 IVLQSGEDPYYTDEKIADIIKEIKKE-LDVAIT-LSLG----------ERSYEEYKAWKEAGAD-RYLLRHETADKELYA 156 (323)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHcc-CCceEE-EecC----------CCCHHHHHHHHHcCCC-EEEeccccCCHHHHH
Confidence 34456654432 35677788777653 332221 1111 3567778887776522 211000
Q ss_pred --CCCCChHHHHHHHHHHHHcCC--cEEEEecC-cccHHHHHHHHHHHHhcCC
Q 007819 161 --DQIRTTEQVNAALTACKNLNL--DGLVIIGG-VTSNTDAAYLAETFAEAKC 208 (588)
Q Consensus 161 --~k~~~~e~~~~i~~~l~~l~I--d~LviIGG-ddS~~~A~~Lae~~~~~g~ 208 (588)
.+-.+.+++.++++.++++++ ..-+++|- ..|........+++++.+.
T Consensus 157 ~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 157 KLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDL 209 (323)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 112367888889999999988 55678885 6688888888888877664
No 275
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.43 E-value=5.3e+02 Score=25.79 Aligned_cols=94 Identities=12% Similarity=0.159 Sum_probs=61.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|.+.+..|+-=.+-.-+.+.+ ++ ..|++|+-. | .+++.+.+-..-..-+.++++-|-.-..+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~--l~--~~G~~Vi~L-----G------~~vp~e~~v~~~~~~~~~~V~lS~~~~~~ 152 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVI--LS--NNGYEVIDL-----G------VMVPIEKILEAAKEHKADIIGLSGLLVPS 152 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHH--HH--hCCCEEEEC-----C------CCCCHHHHHHHHHHcCCCEEEEccchhcc
Confidence 457888888887655444333333 22 347777621 2 35555554444334455577766555557
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNT 194 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~ 194 (588)
..++++.++.|++.+.+--|++||...+.
T Consensus 153 ~~~~~~~i~~L~~~~~~~~i~vGG~~~~~ 181 (213)
T cd02069 153 LDEMVEVAEEMNRRGIKIPLLIGGAATSR 181 (213)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEChhcCH
Confidence 78899999999999999999999976543
No 276
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.34 E-value=2.2e+02 Score=29.97 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=51.1
Q ss_pred CeEecCHhhHhchhh-cCCc-cccc-cccCCCCChHHHHHHHHHHHHcCCcEEEEecCccc--------HHHHHHHHHHH
Q 007819 135 KTLEVTKEILSTYKN-QGGY-DMLG-RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS--------NTDAAYLAETF 203 (588)
Q Consensus 135 ~~~eLt~~~v~~~~n-~GGs-~~lg-S~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS--------~~~A~~Lae~~ 203 (588)
...+.|...+..++. ++|. .+-. ++|+. +...+..+++.+.++||..++.++||-. ...|..|-+..
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~--n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~li 136 (291)
T COG0685 59 GTPRRTSVAAAALLKRTGGIEPIPHLTCRDR--NRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELI 136 (291)
T ss_pred CCCcccHHHHHHHHHhcCCCccceeecccCC--CHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHH
Confidence 345666666665554 4454 2222 45655 6788999999999999999999999984 34677777877
Q ss_pred HhcCCC
Q 007819 204 AEAKCP 209 (588)
Q Consensus 204 ~~~g~~ 209 (588)
++...+
T Consensus 137 k~~~~~ 142 (291)
T COG0685 137 KKMRGG 142 (291)
T ss_pred HHhcCC
Confidence 755533
No 277
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=22.23 E-value=1.4e+02 Score=31.67 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=28.4
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
.+|++|+--|.|+ +++=++.+|++.+-+++||||.-
T Consensus 183 ~~d~vv~~vGtGg--t~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 183 DFDAVVVASGSGG--THAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred CCCEEEEeCCcHH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 4898888777776 56667788887777899999984
No 278
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.20 E-value=1.1e+02 Score=29.81 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 174 ~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
+.+++++.|++|+-||-|+-..+....+.++....+++|.|| |+|++..+..+
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI---------------ClG~Q~la~a~ 89 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV---------------CLGHQAMAQAF 89 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE---------------CHHHHHHHHHc
Confidence 344567899999999999987764433333222224566664 88887655543
No 279
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.15 E-value=1.2e+02 Score=31.91 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeeccc
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTID 220 (588)
.+++.++..|-+ .+|.++||||-.|. |..+|++-+++.|.++-.|-=+.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSs-NT~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSS-NTTRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-hHHHHHHHHHHhCCCEEEECChHHCC
Confidence 345555555533 69999999999986 45778898888775444444444443
No 280
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.14 E-value=4.5e+02 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++++++++++.+.+- +-++++|-..|...|..++..+...| ++++.+
T Consensus 19 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g--~~~~~~ 65 (179)
T cd05005 19 DEEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRLMHLG--LNVYVV 65 (179)
T ss_pred CHHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHHHhCC--CeEEEe
Confidence 567889999988765 67888887778777777777766545 455544
No 281
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=21.91 E-value=7.2e+02 Score=23.91 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=52.1
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
+||+|......|....++.|+-+++... +.++. +-.+.. +++
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~--g~~~~---------------------------------~~~~~~---~~~ 42 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKEL--GVELI---------------------------------VLDAQN---DVS 42 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhc--CceEE---------------------------------EECCCC---CHH
Confidence 5888888778889999999998877641 11110 101111 334
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...+.++.+...++|++++.+.+.... ....+++.+.+ +++|.+
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~~~~~--~~~~~~l~~~~--ip~V~~ 86 (267)
T cd01536 43 KQIQQIEDLIAQGVDGIIISPVDSAAL--TPALKKANAAG--IPVVTV 86 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchhH--HHHHHHHHHCC--CcEEEe
Confidence 445677777777999999987653321 11223344444 677775
No 282
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=21.76 E-value=8.8e+02 Score=24.88 Aligned_cols=89 Identities=24% Similarity=0.258 Sum_probs=56.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+...||+++.....|-.+.++.|+.++++.. +..++ +..+.
T Consensus 62 ~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 103 (342)
T PRK10014 62 GQSGVIGLIVRDLSAPFYAELTAGLTEALEAQ--GRMVF---------------------------------LLQGG--- 103 (342)
T ss_pred CCCCEEEEEeCCCccchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34578999998878888889999998887632 22221 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.+.+.....++.+...++||+++.+.+.... .+.+.+.+.+ ++||.+
T Consensus 104 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 104 KDGEQLAQRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKG--IPVVFA 150 (342)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcC--CCEEEE
Confidence 1334556778888899999999998765322 2223334344 677755
No 283
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.66 E-value=4.9e+02 Score=25.52 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=59.6
Q ss_pred CeEEEEEecCCCcccH-HHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 86 AIRVGIVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~-NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
..+|.+.+.+|+.=.+ -+.++.+++ ..|++|+-. | ..++.+.+-..-..-..+++|-|-....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~-----~~G~~vi~l--G---------~~~p~~~l~~~~~~~~~d~v~lS~~~~~ 145 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLE-----ANGFEVIDL--G---------RDVPPEEFVEAVKEHKPDILGLSALMTT 145 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHH-----HCCCEEEEC--C---------CCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 4578888888865443 334444432 347887411 1 3456555544444446667776654444
Q ss_pred ChHHHHHHHHHHHHcCC--cEEEEecCcccH
Q 007819 165 TTEQVNAALTACKNLNL--DGLVIIGGVTSN 193 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I--d~LviIGGddS~ 193 (588)
+.+...++++.+++.+. +--|++||..-.
T Consensus 146 ~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 146 TMGGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred cHHHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 66789999999999988 788999997654
No 284
>PLN02735 carbamoyl-phosphate synthase
Probab=21.66 E-value=4.1e+02 Score=33.45 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCCeEEEEEecCCCccc--------HHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcc
Q 007819 83 EHPAIRVGIVFCGRQSPG--------GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD 154 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG--------~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~ 154 (588)
....+||.|+-||...-| +..++.++ +. .|.+|+.+-.-+..+. .+....+.+
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaL----ke--~G~~Vi~vd~np~t~~------~~~~~aD~~------- 80 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKAL----KE--EGYEVVLINSNPATIM------TDPETADRT------- 80 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHH----HH--cCCEEEEEeCCccccc------CChhhCcEE-------
Confidence 345689999999975444 44444444 42 3778887754322111 111111111
Q ss_pred ccccccCCCCChHHHHHHHHHHHHcCCcEEEE-ecCcccHHHHHHHHH--HHHhcCCCceEEEee
Q 007819 155 MLGRTKDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAE--TFAEAKCPTKVVGVP 216 (588)
Q Consensus 155 ~lgS~R~k~~~~e~~~~i~~~l~~l~Id~Lvi-IGGddS~~~A~~Lae--~~~~~g~~i~VIgVP 216 (588)
.+ .+.+. +.+.+.|++.++|+++. +||+.....|..|++ .+.+.| ++++|.+
T Consensus 81 yi-----~p~~~---e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G--I~~~G~~ 135 (1102)
T PLN02735 81 YI-----APMTP---ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG--VELIGAK 135 (1102)
T ss_pred Ee-----CCCCH---HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC--CEEECCC
Confidence 01 11132 34667789999999995 588877777777774 344444 7777765
No 285
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=21.65 E-value=1.2e+03 Score=26.24 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=99.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCc-hhhhhcCCeEecCHhh---H-----------hchhhcCCc
Q 007819 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG-SEGLFAQKTLEVTKEI---L-----------STYKNQGGY 153 (588)
Q Consensus 89 IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G-~~GL~~~~~~eLt~~~---v-----------~~~~n~GGs 153 (588)
.-+|+.| ..+...++-. +...++.-+++++..+ ..+++-.++--+-.+. + =-.-+++||
T Consensus 70 ~d~VfGg-----~~~L~~ai~~-~~~~~~~p~~i~v~ttc~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF 143 (461)
T TIGR02931 70 DGAVFGA-----LDRVEEAVDV-LLTRYPDVKVVPIITTCSTEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSF 143 (461)
T ss_pred CceEECc-----HHHHHHHHHH-HHHhcCCCCEEEEECCchHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCC
Confidence 3466655 4454444443 3334544567776643 4555554432111110 0 013456776
Q ss_pred cccccccCCCCChHHHHHHHHHHHHcC--CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee--cccCCCCCCCCC
Q 007819 154 DMLGRTKDQIRTTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV--TLNGDLKNQFVE 229 (588)
Q Consensus 154 ~~lgS~R~k~~~~e~~~~i~~~l~~l~--Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK--TIDNDL~~~~ie 229 (588)
.|+-.... ..-++.+++.+.... -+.+=+|||.-+..+...|.+.+.+.| +.|+.+|- |.|+=+....-.
T Consensus 144 --~gs~~~Gy--~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~G--l~v~~l~d~~s~d~~~~~~~~~ 217 (461)
T TIGR02931 144 --VGSMITGY--DVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMD--IEANVLFEIESFDSPLMPDKSA 217 (461)
T ss_pred --CCcHHHHH--HHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcC--CceEEeeccccccCCCCCcccc
Confidence 34321111 122333444333221 245777898766667788888888777 56667764 444433222101
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHH
Q 007819 230 TNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVY 309 (588)
Q Consensus 230 ~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~ 309 (588)
++.|= ..+.++..-..+.-.+.+..+.+ ..+|+.+++|+ |-+|-..-.|-|+-+ ..
T Consensus 218 ~~~gg--------~tleei~~~~~A~lniv~~~~~g----------~~~A~~Lee~~--giP~~~~~~piGi~~----T~ 273 (461)
T TIGR02931 218 VSHGS--------TTIEDLTDTANAKGTIALNRYEG----------MKAADYLQKKF--DVPAIIGPTPIGIRN----TD 273 (461)
T ss_pred cCCCC--------CcHHHHHhhccCcEEEEEcHhhH----------HHHHHHHHHHh--CCCeeccCCCcchHH----HH
Confidence 11221 22344444333333455554333 25678888877 455554446888765 78
Q ss_pred HHHHHHHHHH
Q 007819 310 ALLKEIHSLL 319 (588)
Q Consensus 310 ~li~el~~~l 319 (588)
+++.+|.+++
T Consensus 274 ~fl~~l~~~~ 283 (461)
T TIGR02931 274 TFLQNLKKMT 283 (461)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 286
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=21.53 E-value=9.3e+02 Score=26.78 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHc-CCcEEEEecCcccHHHHHHHHHHHHhcC-CCceEEEeeecccCCCCCCCCCCCCCchhHHHHHH
Q 007819 165 TTEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l-~Id~LviIGGddS~~~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 242 (588)
+.+...+.+..+-.| |+-+.+++|--=-......|++.+.+.+ -++.++.+- ..=|+.-+.....
T Consensus 68 d~e~~~rtL~g~a~hPNvggvlvvgLGCE~~~~~~l~~~i~~~g~kpv~~l~iQ-------------~~GGt~~~i~~~~ 134 (396)
T PF04295_consen 68 DLELTRRTLAGLARHPNVGGVLVVGLGCENNQPERLAEAIAERGPKPVEFLSIQ-------------EEGGTEDTIEAGV 134 (396)
T ss_pred hHHHHHHHHHHHccCCCeeeEEEEecCCccCcHHHHHHhhhccCCCceEEEEEe-------------ehhhHHHHHHHHH
Confidence 445566666666666 9999999986434456777888888777 445544443 3458888999999
Q ss_pred HHHHHHHHHhhhccc-------eEEeccccccc----CChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCC
Q 007819 243 QLISNVCTDALSAEK-------VILGEEVAASK----LTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 301 (588)
Q Consensus 243 e~I~nl~~dA~S~~k-------vlI~Ee~~~~~----~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl 301 (588)
+.+..+...|...+| .+|+=+.|+.+ +|-.-.+-.++|.+.. .| |.++++|-.
T Consensus 135 ~~~~~l~~~a~~~~R~~~p~s~L~vgl~CGGSD~~SGitaNP~vG~~sD~lv~---~G---Gt~ilsEt~ 198 (396)
T PF04295_consen 135 ELARELLEEANAQQREPVPLSELVVGLKCGGSDATSGITANPAVGRASDRLVA---AG---GTAILSETP 198 (396)
T ss_pred HHHHHHHHHhccCCcccccHHHeEEeeecCCCCcccccccChHHHHHHHHHHH---cC---CEEEEecCc
Confidence 999999999988887 66666677753 4444446677777763 23 788899865
No 287
>PRK04155 chaperone protein HchA; Provisional
Probab=21.49 E-value=9.1e+02 Score=25.42 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHHH--HcCCcEEEEecCcccHHH------HHHHHHHHHhcC
Q 007819 169 VNAALTACK--NLNLDGLVIIGGVTSNTD------AAYLAETFAEAK 207 (588)
Q Consensus 169 ~~~i~~~l~--~l~Id~LviIGGddS~~~------A~~Lae~~~~~g 207 (588)
++.+.+.+. ..+.|+||+-||-+.+.. ...|...|.+++
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~ 180 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND 180 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC
Confidence 444444444 468899999999887654 455555666555
No 288
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=21.49 E-value=47 Score=35.71 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=43.2
Q ss_pred EecCHhhHhchhhcCCcccccc-ccCCCCChHHHHHHHHHHHHcC-----------------CcEEEEecCcccHHHHHH
Q 007819 137 LEVTKEILSTYKNQGGYDMLGR-TKDQIRTTEQVNAALTACKNLN-----------------LDGLVIIGGVTSNTDAAY 198 (588)
Q Consensus 137 ~eLt~~~v~~~~n~GGs~~lgS-~R~k~~~~e~~~~i~~~l~~l~-----------------Id~LviIGGddS~~~A~~ 198 (588)
-.|+++.+..+...-|+|.--- +..|. ...-.+.+.+.|.+-+ .|.+|-+|||||+--|+-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKv-hkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aas 123 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKV-HKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAAS 123 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHH-HHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhh
Confidence 4677777777766666643100 01111 1122344555555544 488999999999887765
Q ss_pred -HHHHHHhcCCCceEEEee
Q 007819 199 -LAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 199 -Lae~~~~~g~~i~VIgVP 216 (588)
+.. + .++||||-
T Consensus 124 rv~~----~--~~PViGvN 136 (395)
T KOG4180|consen 124 RVID----D--SKPVIGVN 136 (395)
T ss_pred hhhc----c--CCceeeec
Confidence 433 2 48999983
No 289
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.24 E-value=2.2e+02 Score=29.25 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=58.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+||+++..-..|-...++.|+-+.+... +..++ +..+. .
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~--gy~~~---------------------------------i~~~~---~ 100 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCREA--GYQLL---------------------------------IACSD---D 100 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---C
Confidence 3468999987666677777777877766532 22222 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+++...+.++.+...++||+++.+.+..... .+ +.+.+.+ ++||.+ |.+.+...+ .+++.|-
T Consensus 101 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~dn 162 (327)
T TIGR02417 101 NPDQEKVVIENLLARQVDALIVASCMPPEDA--YY-QKLQNEG--LPVVAL----DRSLDDEHF-CSVISDD 162 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCChH--HH-HHHHhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 2344456778888999999999886542211 12 3333344 677754 444433221 3565554
No 290
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=21.16 E-value=3.1e+02 Score=25.11 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=40.3
Q ss_pred ccccccCCCCChHHHHHHHHHHHHcCCcEEEE-ecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 155 MLGRTKDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 155 ~lgS~R~k~~~~e~~~~i~~~l~~l~Id~Lvi-IGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++-..|.+..-++..+.+.+..++++.+.+++ +.+.+.. .+..|.+.+.+++..++|++++-|
T Consensus 18 vld~~~~r~~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~~-~~~~l~~~l~~~~~~~~i~~~~~~ 81 (142)
T TIGR01630 18 VLDAIYDKEPPPETERLVIRLLNAHRVNLAIIESNQEGKS-FGRSLVKILKEKGIRTPARAVYPS 81 (142)
T ss_pred EEEEEeccCChHHHHHHHHHHHHHcCCcceeeeccccchH-HHHHHHHHHHhhCCCCCceeeCCC
Confidence 44445666655677788888888999888543 3333322 334455667767777788887754
No 291
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.99 E-value=3e+02 Score=34.37 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
..+.+++.+++.++|+++.--|..+ +..+++.+.+.| ++++|-
T Consensus 618 ~~e~vl~I~~~e~~dgVI~~~g~~~---~~~la~~le~~G--i~ilG~ 660 (1068)
T PRK12815 618 TLEDVLNVAEAENIKGVIVQFGGQT---AINLAKGLEEAG--LTILGT 660 (1068)
T ss_pred CHHHHHHHHhhcCCCEEEEecCcHH---HHHHHHHHHHCC--CeEECC
Confidence 3677889999999999987433332 455666666556 577665
No 292
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.94 E-value=5.3e+02 Score=26.01 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=58.6
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhh--------hcCCeEecCH--hhHhchhhcCCcccc
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL--------FAQKTLEVTK--EILSTYKNQGGYDML 156 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL--------~~~~~~eLt~--~~v~~~~n~GGs~~l 156 (588)
++|+|+-.-|.+ + .-+.+.+. ..|.+|-+|..-..=+ ++.+..+++. +++. |+|.+
T Consensus 1 mKIaiIgAsG~~--G----s~i~~EA~--~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~------g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKA--G----SRILKEAL--KRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLA------GHDAV 66 (211)
T ss_pred CeEEEEecCchh--H----HHHHHHHH--hCCCeeEEEEeChHhccccccceeecccccChhhhHhhhc------CCceE
Confidence 578888877753 2 33444443 3478999988665433 3455666666 4443 44444
Q ss_pred ccccCCC--CCh----HHHHHHHHHHHHcCCcEEEEecCcccHH
Q 007819 157 GRTKDQI--RTT----EQVNAALTACKNLNLDGLVIIGGVTSNT 194 (588)
Q Consensus 157 gS~R~k~--~~~----e~~~~i~~~l~~l~Id~LviIGGddS~~ 194 (588)
=+..... ... +..+.+.+.++.-+..-|+|+||-||+.
T Consensus 67 IsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~ 110 (211)
T COG2910 67 ISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLE 110 (211)
T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceE
Confidence 4433222 111 2356677888888999999999999964
No 293
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=20.88 E-value=2.4e+02 Score=31.49 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHc---CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l---~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.+++. +.||+||.=|-|||.-.+.+-.++. +.+.+||-+=
T Consensus 134 tp~~W~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l--~~~kPVVlTG 186 (419)
T PRK04183 134 TPEYWVEIAEAVYEEIKNGADGVVVAHGTDTMHYTAAALSFML--KTPVPIVFVG 186 (419)
T ss_pred CHHHHHHHHHHHHHHhhccCCeEEEecCCchHHHHHHHHHHhc--CCCCCEEEeC
Confidence 567777777776665 7999999999999987555444443 4456777654
No 294
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=20.88 E-value=4.7e+02 Score=26.64 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=42.5
Q ss_pred hhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 147 ~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
++..|.. +..+..... +..++...+..+++.+.|.+++.|. +. .+..+.+.+.+.|++.++++.
T Consensus 159 ~~~~g~~-v~~~~~~~~-~~~d~~~~l~~i~~~~~~~vi~~~~-~~--~~~~~~~~~~~~g~~~~~~~~ 222 (334)
T cd06342 159 LKAAGGK-VVAREGTTD-GATDFSAILTKIKAANPDAVFFGGY-YP--EAGPLVRQMRQLGLKAPFMGG 222 (334)
T ss_pred HHHcCCE-EEEEecCCC-CCccHHHHHHHHHhcCCCEEEEcCc-ch--hHHHHHHHHHHcCCCCcEEec
Confidence 3445554 776655554 3466888889999999998876653 22 344566777778877666653
No 295
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.76 E-value=5.1e+02 Score=21.73 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=23.2
Q ss_pred EEecCCCcc-cHHHHHHHHHHHHHhcCCCCEE-EEEcC
Q 007819 91 IVFCGRQSP-GGHNVVWGLYDALKLHNPKSTL-LGFLG 126 (588)
Q Consensus 91 Iv~sGG~aP-G~NnvI~gl~~~l~~~~~~~~v-~Gf~~ 126 (588)
++-=|.+.| ..|..+..+.+.+++..+...+ +||..
T Consensus 4 lv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~ 41 (101)
T cd03409 4 VVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQS 41 (101)
T ss_pred EEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 333466666 8889999999888766544333 34443
No 296
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.75 E-value=2.6e+02 Score=29.66 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=46.0
Q ss_pred CccccccccCCCCChHHHHHHHHHHHHcCCcEEEE--------------------------------------ecCcccH
Q 007819 152 GYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVI--------------------------------------IGGVTSN 193 (588)
Q Consensus 152 Gs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~Lvi--------------------------------------IGGddS~ 193 (588)
|+ ||=.+|..+ +.+.++++++.+..++++.|-. -||-=|.
T Consensus 4 G~-mLD~aR~~~-~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~ 81 (326)
T cd06564 4 GF-MLDVGRKYY-SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK 81 (326)
T ss_pred ee-EEEccCCCC-CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH
Confidence 66 888888877 6889999999999999999985 2334477
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 007819 194 TDAAYLAETFAEAKCPTKV 212 (588)
Q Consensus 194 ~~A~~Lae~~~~~g~~i~V 212 (588)
.....|.+|++++| |.|
T Consensus 82 ~di~eiv~yA~~rg--I~v 98 (326)
T cd06564 82 EEFKELIAYAKDRG--VNI 98 (326)
T ss_pred HHHHHHHHHHHHcC--CeE
Confidence 77888999999888 455
No 297
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=20.56 E-value=1.4e+02 Score=28.88 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 240 (588)
+.|+||+.||-++-.....+.+.+++...+++|.| .|+|++--+..
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLG---------------IClG~Qlla~~ 88 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILG---------------VCLGHQTLCEF 88 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEE---------------EcHHHHHHHHH
Confidence 57899999999965444444444432222356655 49999866555
No 298
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.52 E-value=2e+02 Score=27.13 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHH-HHHHHHHHHHhcCCCc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNT-DAAYLAETFAEAKCPT 210 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~-~A~~Lae~~~~~g~~i 210 (588)
+.+++.+.++.+. ..+.++++-||+ -+. ....|.++++++|+++
T Consensus 47 t~eel~~~I~~~~-~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 47 TPEYLTKTLDKYR-SLISCVLFLGGE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred CHHHHHHHHHHhC-CCCCEEEEechh-cCHHHHHHHHHHHHHCCCCE
Confidence 3344444444433 247899999999 443 3557777777766433
No 299
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=20.41 E-value=76 Score=30.51 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCC
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFV 228 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i 228 (588)
.++.+++.++.. .+-++||||-.-...+..+++ .+-+--|+.+.+.|..-+.+
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP~~ 131 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFPEI 131 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECSSC
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECCCC
Confidence 466677755555 899999999888777766443 47788899999999877754
No 300
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=20.28 E-value=5.7e+02 Score=26.82 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=46.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+++||+|+.||+ ++ -...++++.+...-..+|-++.- ++ .++..+...=|-...--.+.+
T Consensus 82 ~~~~ki~vl~Sg~----g~-nl~~l~~~~~~g~l~~~i~~vis-------n~------~~~~~~A~~~gIp~~~~~~~~- 142 (280)
T TIGR00655 82 DKLKRVAILVSKE----DH-CLGDLLWRWYSGELDAEIALVIS-------NH------EDLRSLVERFGIPFHYIPATK- 142 (280)
T ss_pred CCCcEEEEEEcCC----Ch-hHHHHHHHHHcCCCCcEEEEEEE-------cC------hhHHHHHHHhCCCEEEcCCCC-
Confidence 3568999999998 22 24555555543222345544432 21 111111111121111111111
Q ss_pred CChHHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHH
Q 007819 164 RTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA 204 (588)
Q Consensus 164 ~~~e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~ 204 (588)
.+.+.+ .++++.++++++|.+|+.| - ...|.+.|.
T Consensus 143 ~~~~~~e~~~~~~l~~~~~Dlivlag-y-----m~il~~~~l 178 (280)
T TIGR00655 143 DNRVEHEKRQLELLKQYQVDLVVLAK-Y-----MQILSPDFV 178 (280)
T ss_pred cchhhhHHHHHHHHHHhCCCEEEEeC-c-----hhhCCHHHH
Confidence 122333 4678889999999666554 3 345555444
No 301
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=20.27 E-value=1.1e+02 Score=30.03 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=43.7
Q ss_pred cCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 139 VTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 139 Lt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
.|...++.++.+| . -+...|....+. +.++.++.|++|+-||-++-.......+.+++..-+++|.|
T Consensus 11 ft~nl~~~l~~~g-~-~v~v~~~~~~~~-------~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLG---- 77 (195)
T PRK07649 11 FTFNLVQFLGELG-Q-ELVVKRNDEVTI-------SDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFG---- 77 (195)
T ss_pred cHHHHHHHHHHCC-C-cEEEEeCCCCCH-------HHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEE----
Confidence 3444555566664 4 233344331122 23456789999999999997664333333222112355655
Q ss_pred ccCCCCCCCCCCCCCchhHHHH
Q 007819 219 LNGDLKNQFVETNVGFDTICKV 240 (588)
Q Consensus 219 IDNDL~~~~ie~S~GFdTA~k~ 240 (588)
.|+|++-.+..
T Consensus 78 -----------IClG~Qlla~~ 88 (195)
T PRK07649 78 -----------VCLGHQSIAQV 88 (195)
T ss_pred -----------EcHHHHHHHHH
Confidence 48888876664
No 302
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.25 E-value=6.5e+02 Score=26.83 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=68.8
Q ss_pred CeEEEEEecCCCcccH-HHHHHHHHHHHHhcCCCCEEEEEcCchhhhh--cCCeEecCHhhHhchhhcCCccccccccC-
Q 007819 86 AIRVGIVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLF--AQKTLEVTKEILSTYKNQGGYDMLGRTKD- 161 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~-NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~--~~~~~eLt~~~v~~~~n~GGs~~lgS~R~- 161 (588)
..+|.++ ||.-|.. -.-+..+++.+++..++-++.++- ...++ ....-.++++.+..++..|=.-+.+++..
T Consensus 87 ~~~i~l~--gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t--~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~ 162 (343)
T TIGR03551 87 ATEVCIQ--GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFS--PMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEI 162 (343)
T ss_pred CCEEEEE--eCCCCCCCHHHHHHHHHHHHHHCCCceEEecC--HHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhh
Confidence 4556655 6655654 345688899998776666665552 11110 00111235566666665542223333221
Q ss_pred -------CC---C-ChHHHHHHHHHHHHcCCcE--EEEecCcccHHHHHHHHHHHHhcC
Q 007819 162 -------QI---R-TTEQVNAALTACKNLNLDG--LVIIGGVTSNTDAAYLAETFAEAK 207 (588)
Q Consensus 162 -------k~---~-~~e~~~~i~~~l~~l~Id~--LviIGGddS~~~A~~Lae~~~~~g 207 (588)
++ + +.++.-++++.++++|+.. -+++|=.+|..........+++.+
T Consensus 163 ~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~ 221 (343)
T TIGR03551 163 LDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ 221 (343)
T ss_pred cCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh
Confidence 11 1 5567778999999987654 778884478877777777777654
No 303
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.22 E-value=2.2e+02 Score=31.02 Aligned_cols=35 Identities=20% Similarity=0.053 Sum_probs=29.0
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
=|.+.+|=|=|||...|..|+++++.. +..|=-+|
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIP 299 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLIL 299 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEe
Confidence 377888889999999999999998754 45777777
No 304
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=20.21 E-value=3e+02 Score=27.69 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcc--cHHHHHHHHHHHHhcCCCceEEEeeecccC
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVT--SNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGdd--S~~~A~~Lae~~~~~g~~i~VIgVPKTIDN 221 (588)
++++++++.+.+.+-|++ +|||-. +..+...+.+.+++ ..+++||--|.+.+.
T Consensus 11 e~~~~ia~~v~~~gtDaI-~VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAI-MVGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHHHHHHhcCCCEE-EEcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccc
Confidence 667778888999999988 556654 45556656666655 357899988866654
Done!