Query 007819
Match_columns 588
No_of_seqs 256 out of 1267
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f48_A Diphosphate--fructose-6 100.0 6E-122 2E-126 1016.2 43.7 510 9-533 1-554 (555)
2 2hig_A 6-phospho-1-fructokinas 100.0 4.7E-69 1.6E-73 584.5 36.5 365 65-500 79-452 (487)
3 3hno_A Pyrophosphate-dependent 100.0 1.2E-69 4.1E-74 582.9 30.7 341 86-465 3-361 (419)
4 1zxx_A 6-phosphofructokinase; 100.0 3.7E-67 1.3E-71 545.8 33.4 296 87-464 2-303 (319)
5 1pfk_A Phosphofructokinase; tr 100.0 6.5E-67 2.2E-71 544.2 33.4 296 86-463 2-304 (320)
6 4a3s_A 6-phosphofructokinase; 100.0 2E-64 6.7E-69 526.5 31.4 297 86-464 1-303 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 1.9E-60 6.5E-65 540.2 27.0 317 83-465 12-356 (762)
8 3o8o_B 6-phosphofructokinase s 100.0 1.2E-58 4.1E-63 525.7 33.6 295 86-463 3-344 (766)
9 3o8o_A 6-phosphofructokinase s 100.0 2.1E-58 7.1E-63 523.6 31.7 295 85-463 4-344 (787)
10 3opy_B 6-phosphofructo-1-kinas 100.0 2.3E-58 8E-63 528.6 29.9 297 84-463 179-522 (941)
11 3opy_A 6-phosphofructo-1-kinas 100.0 8.5E-58 2.9E-62 522.5 31.8 296 84-463 208-549 (989)
12 3o8l_A 6-phosphofructokinase, 100.0 1.6E-57 5.5E-62 516.3 30.4 306 84-462 398-728 (762)
13 3o8o_A 6-phosphofructokinase s 100.0 5.2E-56 1.8E-60 504.0 28.7 316 84-465 391-747 (787)
14 3o8o_B 6-phosphofructokinase s 100.0 1.8E-55 6.2E-60 499.7 27.4 319 85-464 392-736 (766)
15 3opy_B 6-phosphofructo-1-kinas 100.0 3.8E-55 1.3E-59 502.1 29.7 321 84-465 569-913 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 1.2E-53 4.2E-58 488.2 30.2 284 84-433 596-894 (989)
17 2an1_A Putative kinase; struct 88.9 0.7 2.4E-05 46.5 7.1 90 86-216 5-94 (292)
18 2i2c_A Probable inorganic poly 88.5 0.32 1.1E-05 48.8 4.2 47 168-217 16-69 (272)
19 3l49_A ABC sugar (ribose) tran 81.3 33 0.0011 32.8 14.8 128 85-261 4-131 (291)
20 1z0s_A Probable inorganic poly 76.6 1.2 4E-05 45.2 2.7 53 180-250 68-122 (278)
21 3m9w_A D-xylose-binding peripl 75.4 16 0.00056 35.7 10.7 105 86-236 2-106 (313)
22 1jq5_A Glycerol dehydrogenase; 75.0 5.3 0.00018 41.5 7.2 48 166-218 72-119 (370)
23 3l6u_A ABC-type sugar transpor 74.9 26 0.00089 33.6 11.9 107 84-236 6-112 (293)
24 1oj7_A Hypothetical oxidoreduc 74.8 3.1 0.00011 43.9 5.5 55 165-219 91-161 (408)
25 3egc_A Putative ribose operon 74.3 11 0.00038 36.4 9.1 104 84-236 6-109 (291)
26 3tb6_A Arabinose metabolism tr 74.0 15 0.00051 35.3 9.9 106 86-236 15-121 (298)
27 3ksm_A ABC-type sugar transpor 73.9 24 0.00081 33.4 11.2 106 87-236 1-107 (276)
28 3jy6_A Transcriptional regulat 73.8 28 0.00094 33.3 11.7 103 84-236 5-107 (276)
29 3k4h_A Putative transcriptiona 73.5 21 0.00071 34.3 10.8 105 84-236 6-115 (292)
30 3g1w_A Sugar ABC transporter; 73.1 68 0.0023 30.8 19.9 168 85-303 3-170 (305)
31 3iv7_A Alcohol dehydrogenase I 71.5 5.5 0.00019 41.6 6.4 52 165-222 73-124 (364)
32 3uhj_A Probable glycerol dehyd 71.5 5.8 0.0002 41.8 6.6 49 165-218 91-139 (387)
33 1u0t_A Inorganic polyphosphate 71.5 2.3 7.9E-05 43.2 3.4 33 179-216 74-106 (307)
34 3pfn_A NAD kinase; structural 71.3 2.2 7.4E-05 44.9 3.2 123 83-250 35-163 (365)
35 1o2d_A Alcohol dehydrogenase, 70.3 4.1 0.00014 42.5 5.1 57 165-221 83-152 (371)
36 3hl0_A Maleylacetate reductase 69.6 7.4 0.00025 40.4 6.8 52 165-222 72-123 (353)
37 8abp_A L-arabinose-binding pro 69.5 33 0.0011 33.0 11.3 87 86-215 2-88 (306)
38 3jzd_A Iron-containing alcohol 69.3 6.1 0.00021 41.2 6.1 50 165-219 74-123 (358)
39 3ox4_A Alcohol dehydrogenase 2 69.3 7.2 0.00025 40.8 6.7 58 165-222 73-143 (383)
40 3d8u_A PURR transcriptional re 68.6 45 0.0015 31.5 11.9 102 86-236 3-104 (275)
41 2bon_A Lipid kinase; DAG kinas 68.3 6.4 0.00022 40.2 6.0 48 176-224 78-125 (332)
42 1yt5_A Inorganic polyphosphate 68.3 1.7 5.7E-05 43.2 1.5 32 179-216 40-71 (258)
43 3gbv_A Putative LACI-family tr 67.8 71 0.0024 30.5 13.2 111 84-236 6-117 (304)
44 1rrm_A Lactaldehyde reductase; 67.4 7.6 0.00026 40.5 6.4 56 165-220 73-143 (386)
45 3afo_A NADH kinase POS5; alpha 67.2 1.9 6.5E-05 45.7 1.7 101 84-216 39-146 (388)
46 3l8m_A Probable thiamine pyrop 67.1 20 0.0007 34.4 8.9 81 117-201 21-115 (212)
47 3brq_A HTH-type transcriptiona 67.1 54 0.0019 31.2 12.2 104 84-236 17-123 (296)
48 3o1i_D Periplasmic protein TOR 66.8 30 0.001 33.3 10.3 107 85-236 4-115 (304)
49 3uug_A Multiple sugar-binding 66.7 41 0.0014 32.9 11.4 105 86-236 3-108 (330)
50 3o74_A Fructose transport syst 65.6 25 0.00084 33.3 9.2 103 86-236 2-104 (272)
51 3hno_A Pyrophosphate-dependent 65.3 4.4 0.00015 43.4 4.1 37 258-303 215-251 (419)
52 3clh_A 3-dehydroquinate syntha 65.1 7.5 0.00026 40.1 5.7 52 165-219 67-121 (343)
53 3dbi_A Sugar-binding transcrip 65.1 49 0.0017 32.7 11.7 105 84-236 59-165 (338)
54 3rf7_A Iron-containing alcohol 64.3 7 0.00024 41.0 5.4 56 165-220 91-162 (375)
55 3bfj_A 1,3-propanediol oxidore 64.3 11 0.00039 39.2 7.0 55 165-219 77-144 (387)
56 1xah_A Sadhqs, 3-dehydroquinat 64.1 7.5 0.00026 40.2 5.5 52 165-219 72-126 (354)
57 1vlj_A NADH-dependent butanol 61.2 10 0.00034 40.0 5.9 56 165-220 86-154 (407)
58 3gv0_A Transcriptional regulat 60.8 31 0.0011 33.2 9.1 104 84-236 6-111 (288)
59 1sg6_A Pentafunctional AROM po 60.7 11 0.00038 39.6 6.1 52 165-219 85-141 (393)
60 3kjx_A Transcriptional regulat 60.6 61 0.0021 32.1 11.5 88 84-215 66-153 (344)
61 3rot_A ABC sugar transporter, 60.5 1.2E+02 0.0041 29.0 14.1 107 86-236 3-112 (297)
62 2rgy_A Transcriptional regulat 59.9 73 0.0025 30.5 11.7 104 84-236 6-112 (290)
63 2fep_A Catabolite control prot 59.5 81 0.0028 30.2 11.9 104 84-236 14-117 (289)
64 3ce9_A Glycerol dehydrogenase; 59.0 7.2 0.00024 40.2 4.3 53 165-223 74-126 (354)
65 2qv7_A Diacylglycerol kinase D 58.0 9.6 0.00033 38.9 5.0 48 174-224 74-121 (337)
66 1dbq_A Purine repressor; trans 57.1 75 0.0026 30.2 11.1 105 85-236 6-110 (289)
67 3e61_A Putative transcriptiona 55.4 64 0.0022 30.5 10.2 100 84-236 6-106 (277)
68 3nkl_A UDP-D-quinovosamine 4-d 55.2 78 0.0027 27.1 9.9 98 85-217 3-100 (141)
69 3lm8_A Thiamine pyrophosphokin 55.0 29 0.001 33.6 7.7 84 118-204 25-122 (222)
70 3okf_A 3-dehydroquinate syntha 54.6 13 0.00046 39.2 5.5 52 165-219 105-159 (390)
71 1ujn_A Dehydroquinate synthase 54.1 14 0.00046 38.2 5.4 52 165-219 66-120 (348)
72 3s4y_A Thiamin pyrophosphokina 54.0 54 0.0018 32.2 9.5 104 86-202 20-149 (247)
73 3auf_A Glycinamide ribonucleot 52.9 82 0.0028 30.6 10.5 103 82-201 18-121 (229)
74 3qbe_A 3-dehydroquinate syntha 52.7 16 0.00054 38.3 5.6 52 165-219 85-139 (368)
75 3brs_A Periplasmic binding pro 51.4 50 0.0017 31.4 8.8 108 85-236 4-113 (289)
76 3hs3_A Ribose operon repressor 50.3 25 0.00085 33.7 6.4 98 84-236 8-107 (277)
77 3av3_A Phosphoribosylglycinami 50.2 60 0.0021 31.0 9.0 99 86-201 3-102 (212)
78 1qpz_A PURA, protein (purine n 50.1 1.1E+02 0.0038 30.1 11.4 106 84-236 56-161 (340)
79 3k94_A Thiamin pyrophosphokina 50.1 51 0.0018 31.9 8.5 81 118-201 24-118 (223)
80 1kq3_A Glycerol dehydrogenase; 50.0 13 0.00043 38.7 4.4 48 165-218 80-127 (376)
81 3s40_A Diacylglycerol kinase; 49.9 14 0.00048 37.2 4.6 51 170-224 54-104 (304)
82 1meo_A Phosophoribosylglycinam 48.3 64 0.0022 30.9 8.8 94 87-200 1-98 (209)
83 3c3k_A Alanine racemase; struc 48.2 1.1E+02 0.0037 29.2 10.6 103 84-236 6-108 (285)
84 1ta9_A Glycerol dehydrogenase; 48.0 15 0.00052 39.4 4.7 48 165-218 131-178 (450)
85 2gru_A 2-deoxy-scyllo-inosose 47.9 20 0.00069 37.2 5.5 52 165-219 76-130 (368)
86 3bbl_A Regulatory protein of L 46.9 68 0.0023 30.7 8.9 102 86-236 4-109 (287)
87 3k9c_A Transcriptional regulat 46.5 62 0.0021 31.1 8.6 101 84-236 10-110 (289)
88 2fn9_A Ribose ABC transporter, 46.1 1.4E+02 0.0048 28.2 11.1 105 86-236 2-107 (290)
89 3cs3_A Sugar-binding transcrip 45.2 1.3E+02 0.0045 28.4 10.7 31 84-114 6-36 (277)
90 3huu_A Transcription regulator 44.4 88 0.003 30.2 9.4 104 84-236 20-128 (305)
91 3p9x_A Phosphoribosylglycinami 43.5 1.1E+02 0.0037 29.4 9.6 99 86-201 2-101 (211)
92 3kke_A LACI family transcripti 41.9 1E+02 0.0035 29.7 9.4 103 84-236 13-115 (303)
93 2yxb_A Coenzyme B12-dependent 41.9 85 0.0029 28.5 8.2 94 85-194 17-112 (161)
94 2iks_A DNA-binding transcripti 41.8 90 0.0031 29.9 8.9 105 84-236 18-122 (293)
95 2dri_A D-ribose-binding protei 41.7 2.3E+02 0.0077 26.6 13.0 104 87-236 2-105 (271)
96 3lkv_A Uncharacterized conserv 41.0 1.7E+02 0.0057 28.7 10.9 94 84-218 6-99 (302)
97 2pn1_A Carbamoylphosphate synt 39.8 2.2E+02 0.0075 27.8 11.7 47 165-214 57-103 (331)
98 1jkx_A GART;, phosphoribosylgl 39.0 1.4E+02 0.0046 28.6 9.5 98 87-201 1-99 (212)
99 3h5o_A Transcriptional regulat 38.7 1.7E+02 0.0059 28.7 10.7 88 84-215 60-147 (339)
100 1iv0_A Hypothetical protein; r 38.4 23 0.0008 29.9 3.5 33 192-224 36-68 (98)
101 2o20_A Catabolite control prot 38.4 2.2E+02 0.0075 27.8 11.4 104 84-236 61-164 (332)
102 2x7x_A Sensor protein; transfe 37.5 1.6E+02 0.0055 28.6 10.2 106 85-236 5-110 (325)
103 3e3m_A Transcriptional regulat 37.1 54 0.0019 32.7 6.7 88 84-215 68-155 (355)
104 4b4t_W RPN10, 26S proteasome r 37.0 74 0.0025 31.7 7.5 50 167-216 89-145 (268)
105 2hsg_A Glucose-resistance amyl 36.3 1.8E+02 0.006 28.4 10.2 104 84-236 58-161 (332)
106 3nxk_A Cytoplasmic L-asparagin 35.9 77 0.0026 32.7 7.6 50 165-216 70-122 (334)
107 3jvd_A Transcriptional regulat 34.3 57 0.0019 32.3 6.2 97 84-236 62-158 (333)
108 2fvy_A D-galactose-binding per 33.9 2.8E+02 0.0097 26.2 11.1 88 87-216 3-91 (309)
109 3ihk_A Thiamin pyrophosphokina 33.8 69 0.0023 30.8 6.5 87 90-192 4-100 (218)
110 2vk2_A YTFQ, ABC transporter p 33.8 2.1E+02 0.0073 27.4 10.3 105 86-236 2-109 (306)
111 1vp8_A Hypothetical protein AF 33.3 65 0.0022 30.9 5.9 47 164-216 27-73 (201)
112 4pga_A Glutaminase-asparaginas 32.5 76 0.0026 32.7 6.9 50 165-216 71-124 (337)
113 3ot5_A UDP-N-acetylglucosamine 32.1 1.5E+02 0.0052 30.6 9.3 114 87-216 28-145 (403)
114 3hcw_A Maltose operon transcri 32.1 45 0.0015 32.2 4.9 104 84-235 5-114 (295)
115 3clk_A Transcription regulator 31.8 1.5E+02 0.0052 28.1 8.7 104 84-236 6-109 (290)
116 8abp_A L-arabinose-binding pro 31.4 2.2E+02 0.0075 27.0 9.8 48 166-215 180-231 (306)
117 3apt_A Methylenetetrahydrofola 31.0 41 0.0014 34.2 4.5 103 105-216 31-150 (310)
118 3o1l_A Formyltetrahydrofolate 30.8 2.3E+02 0.0077 28.7 10.0 99 84-201 103-201 (302)
119 2h3h_A Sugar ABC transporter, 30.4 2.3E+02 0.0077 27.3 9.8 63 166-236 43-105 (313)
120 1ccw_A Protein (glutamate muta 30.3 82 0.0028 27.7 5.9 89 87-191 4-94 (137)
121 4dxd_A Cell division protein F 29.9 5.1E+02 0.018 27.2 13.2 148 86-253 17-208 (396)
122 3u0h_A Xylose isomerase domain 29.9 1.7E+02 0.0057 27.7 8.6 49 168-216 17-69 (281)
123 3trh_A Phosphoribosylaminoimid 29.5 49 0.0017 31.0 4.3 49 164-218 45-93 (169)
124 2v5c_A O-GLCNACASE NAGJ; glyco 29.1 6.2E+02 0.021 27.9 15.0 141 147-303 149-307 (594)
125 2ywr_A Phosphoribosylglycinami 28.9 2.3E+02 0.0077 27.0 9.2 96 87-199 2-98 (216)
126 3fst_A 5,10-methylenetetrahydr 28.4 57 0.0019 33.2 5.0 104 105-216 41-153 (304)
127 3qk7_A Transcriptional regulat 28.1 52 0.0018 31.7 4.6 102 85-236 5-110 (294)
128 3g85_A Transcriptional regulat 28.0 76 0.0026 30.2 5.7 32 84-115 9-41 (289)
129 3h75_A Periplasmic sugar-bindi 27.9 4.3E+02 0.015 25.7 11.7 90 86-218 3-95 (350)
130 2him_A L-asparaginase 1; hydro 27.9 1.1E+02 0.0036 31.9 7.1 52 165-217 84-137 (358)
131 3d02_A Putative LACI-type tran 27.6 3.9E+02 0.013 25.1 13.0 105 86-236 4-109 (303)
132 3mel_A Thiamin pyrophosphokina 26.6 61 0.0021 31.3 4.7 91 90-192 4-104 (222)
133 3lp6_A Phosphoribosylaminoimid 26.6 48 0.0016 31.2 3.7 49 164-218 46-94 (174)
134 1i60_A IOLI protein; beta barr 26.6 3.9E+02 0.014 24.8 12.3 49 169-217 16-69 (278)
135 3kuu_A Phosphoribosylaminoimid 26.3 48 0.0016 31.2 3.6 49 164-218 51-99 (174)
136 1agx_A Glutaminase-asparaginas 26.3 89 0.0031 32.0 6.1 49 165-215 63-115 (331)
137 4ds3_A Phosphoribosylglycinami 26.2 1.8E+02 0.0061 27.8 7.9 95 85-199 6-104 (209)
138 2d6f_A Glutamyl-tRNA(Gln) amid 26.2 1.1E+02 0.0037 32.8 6.9 50 165-216 149-201 (435)
139 2i2x_B MTAC, methyltransferase 25.7 1.9E+02 0.0065 28.1 8.2 95 84-193 121-215 (258)
140 3cqj_A L-ribulose-5-phosphate 25.5 4.4E+02 0.015 25.1 12.5 50 168-217 31-89 (295)
141 1o7j_A L-asparaginase; atomic 25.4 97 0.0033 31.7 6.2 50 165-216 66-119 (327)
142 1tjy_A Sugar transport protein 25.2 1.2E+02 0.004 29.7 6.7 106 86-236 3-109 (316)
143 3mjf_A Phosphoribosylamine--gl 25.2 66 0.0023 33.8 5.0 96 85-215 2-97 (431)
144 2rjo_A Twin-arginine transloca 25.0 4.7E+02 0.016 25.2 11.7 93 85-219 4-98 (332)
145 1wls_A L-asparaginase; structu 24.9 1.1E+02 0.0038 31.3 6.5 51 165-216 56-108 (328)
146 2wlt_A L-asparaginase; hydrola 24.8 98 0.0034 31.7 6.1 50 165-216 66-119 (332)
147 1nu0_A Hypothetical protein YQ 24.6 49 0.0017 29.7 3.3 28 196-223 42-69 (138)
148 1xmp_A PURE, phosphoribosylami 24.5 46 0.0016 31.2 3.1 49 164-218 50-98 (170)
149 2v5d_A O-GLCNACASE NAGJ; famil 23.9 6.5E+02 0.022 28.4 13.3 139 147-302 149-306 (737)
150 3dzc_A UDP-N-acetylglucosamine 23.7 1.9E+02 0.0065 29.6 8.2 117 84-216 23-142 (396)
151 3gyb_A Transcriptional regulat 23.3 2.5E+02 0.0086 26.2 8.5 39 85-125 4-42 (280)
152 1o4v_A Phosphoribosylaminoimid 22.8 48 0.0016 31.4 2.9 49 164-219 52-101 (183)
153 3ors_A N5-carboxyaminoimidazol 22.8 48 0.0016 30.9 2.9 49 164-218 42-90 (163)
154 2omk_A Hypothetical protein; s 22.4 3.1E+02 0.01 26.5 8.8 100 90-203 34-147 (231)
155 2kwv_A RAD30 homolog B, DNA po 22.3 34 0.0012 25.3 1.4 18 337-354 18-35 (48)
156 1wsa_A Asparaginase, asparagin 22.2 99 0.0034 31.6 5.5 50 165-216 64-117 (330)
157 1jye_A Lactose operon represso 22.1 5.5E+02 0.019 25.1 11.1 105 84-236 59-163 (349)
158 3h5t_A Transcriptional regulat 21.9 83 0.0029 31.4 4.9 56 169-235 117-172 (366)
159 3fij_A LIN1909 protein; 11172J 21.9 2.2E+02 0.0074 27.5 7.7 47 136-191 26-72 (254)
160 2i4r_A V-type ATP synthase sub 21.9 74 0.0025 27.1 3.8 30 277-307 40-69 (102)
161 1x60_A Sporulation-specific N- 21.7 1.8E+02 0.006 22.6 5.8 46 164-209 18-72 (79)
162 1t57_A Conserved protein MTH16 21.7 91 0.0031 30.0 4.6 46 164-216 35-80 (206)
163 1vdr_A DHFR, dihydrofolate red 21.5 36 0.0012 30.8 1.8 52 168-226 81-132 (162)
164 2gzm_A Glutamate racemase; enz 21.3 2.3E+02 0.0078 27.6 7.8 91 88-215 5-95 (267)
165 3ksm_A ABC-type sugar transpor 21.3 2.9E+02 0.0099 25.5 8.4 103 106-214 112-219 (276)
166 2qip_A Protein of unknown func 21.2 39 0.0013 30.8 1.9 53 168-223 95-149 (165)
167 3qc0_A Sugar isomerase; TIM ba 21.0 3.8E+02 0.013 25.0 9.2 48 168-215 19-66 (275)
168 3vot_A L-amino acid ligase, BL 20.9 2.7E+02 0.0092 28.5 8.7 94 84-203 3-97 (425)
169 3oow_A Phosphoribosylaminoimid 20.9 97 0.0033 28.9 4.6 48 164-217 44-91 (166)
170 2ioy_A Periplasmic sugar-bindi 20.8 1.5E+02 0.0053 28.0 6.4 104 87-236 2-105 (283)
171 3g1w_A Sugar ABC transporter; 20.7 5.2E+02 0.018 24.3 10.3 46 166-215 172-220 (305)
172 2epl_X N-acetyl-beta-D-glucosa 20.6 1.5E+02 0.0051 33.2 6.9 137 90-250 47-212 (627)
173 3h3e_A Uncharacterized protein 20.6 2.3E+02 0.0078 27.9 7.6 77 90-203 174-250 (267)
174 3lp8_A Phosphoribosylamine-gly 20.6 2.5E+02 0.0084 29.4 8.4 44 166-214 69-112 (442)
175 1u11_A PURE (N5-carboxyaminoim 20.5 57 0.002 30.9 2.9 49 164-218 60-108 (182)
176 3sho_A Transcriptional regulat 20.3 2.4E+02 0.0082 25.1 7.3 48 165-216 25-72 (187)
177 1y80_A Predicted cobalamin bin 20.3 2.5E+02 0.0084 26.1 7.5 92 86-193 88-182 (210)
178 1jak_A Beta-N-acetylhexosamini 20.1 6.1E+02 0.021 27.4 11.5 62 147-213 157-248 (512)
No 1
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=6.3e-122 Score=1016.16 Aligned_cols=510 Identities=35% Similarity=0.652 Sum_probs=473.9
Q ss_pred CCCChhhhhhhccCCCCCcCcCCCc--eeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCC
Q 007819 9 RELSGLQQLRSLYQPELPPCLQGTT--VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (588)
Q Consensus 9 ~~~s~lq~~R~~~~p~lp~~l~~~~--~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
|++|+||++|+.|+|+||++|++.. ++++.++.+++. .|+++|+++|||||++|.++|.++.. . ...+++
T Consensus 1 ~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~---~---~~~~~~ 72 (555)
T 2f48_A 1 MNTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGES---S---LSFSKA 72 (555)
T ss_dssp ---CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCC---C---CSCCSC
T ss_pred CCCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCc--cCHHHHHHhCccccCCCcEEEecCCc---c---cccCCC
Confidence 6799999999999999999999864 899999988875 89999999999999999999998752 1 135678
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||||++||||||||||||+|++++++..+++++||||++||+||+++++++|+++.++.|+++|||.+|||+|.+++++
T Consensus 73 ~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~ 152 (555)
T 2f48_A 73 LNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETE 152 (555)
T ss_dssp CEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSH
T ss_pred cEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCH
Confidence 99999999999999999999999999888899999999999999999999999999999999999955999999999899
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 246 (588)
+++++++++|++++||+||+||||||+++|+.|++++.+++++++||||||||||||+++.||+|||||||+++++++|+
T Consensus 153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId 232 (555)
T 2f48_A 153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIG 232 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHhhhccc-eEEecccccc--------------------------cCChhhHHHHHHHHHHHHHHCCCCeEEEEEcC
Q 007819 247 NVCTDALSAEK-VILGEEVAAS--------------------------KLTLFDLTKQICDAVQARAEQDKNHGVILLPE 299 (588)
Q Consensus 247 nl~~dA~S~~k-vlI~Ee~~~~--------------------------~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpE 299 (588)
+|++||.|+++ ++|+|.||+. +++|.++++.||+.|++|+..|++|+||+|||
T Consensus 233 ~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaE 312 (555)
T 2f48_A 233 NLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPE 312 (555)
T ss_dssp HHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999865 8888866542 23456678999999999999999999999999
Q ss_pred CCcCcchhHHHHHHHHHHHHhcCcc----------ccCccccCCchhhhhhccChhhHhhhhc---cCCCCCCCcccchh
Q 007819 300 GLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQI 366 (588)
Q Consensus 300 Gl~~~ipe~~~li~el~~~l~~~~~----------~~e~~~~ls~~~~~l~~~lp~~i~~qll---~~rD~~Gn~~ls~i 366 (588)
|+++++|+++.|++|++++++++.. ...+.++||||+.++|.++|..|++||+ .++|+|||+++++|
T Consensus 313 G~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i 392 (555)
T 2f48_A 313 GLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRV 392 (555)
T ss_dssp TGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTS
T ss_pred CCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccc
Confidence 9999999999999999998876411 0234567999999999999999999987 68999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 007819 367 ETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNP 446 (588)
Q Consensus 367 ~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~ 446 (588)
+||++|+++|+++|++++.++.|++. |++|+|+|||+||||.||+||+.||++||+.|++++++|.||+|++++|++.+
T Consensus 393 ~t~~~L~~~v~~~l~~~~~~~~~~~~-~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~ 471 (555)
T 2f48_A 393 PTEKLFIEMIQSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK 471 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHHHhcccCcccc-eeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 99999999999999999888999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCC--CCc
Q 007819 447 ANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAK 524 (588)
Q Consensus 447 ~~~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~ 524 (588)
+|+|++.++||++|||+|+ |+| +.+|+|++++||++|++|++|+++|++|+++|+|||||||||+||.+ |++
T Consensus 472 ~~~w~~~~vPl~~~~n~ek-~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~ 545 (555)
T 2f48_A 472 PTDWIAGGVPLTMLMNMEE-RYG-----EKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEI 545 (555)
T ss_dssp GGGCEEEEEEGGGGEEEEE-ETT-----EEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCC
T ss_pred ccceEEEeeeHHHHhhhhh-hcC-----ccccceeeeeeCCCCHHHHHHHHHHHHhhhcCcccCCCCEeecCccccccCC
Confidence 9999999999999999998 888 88999999999999999999999999999999999999999999998 999
Q ss_pred cceEEeccc
Q 007819 525 AVTLCVEDR 533 (588)
Q Consensus 525 ~~tl~~e~~ 533 (588)
++||.||+.
T Consensus 546 ~~tl~~e~~ 554 (555)
T 2f48_A 546 TETLKLELF 554 (555)
T ss_dssp CHHHHHHTC
T ss_pred Cceeecccc
Confidence 999999864
No 2
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=4.7e-69 Score=584.46 Aligned_cols=365 Identities=19% Similarity=0.241 Sum_probs=298.7
Q ss_pred ceeEecCccCCCccccccCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhc---CCeEecCH
Q 007819 65 LAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA---QKTLEVTK 141 (588)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~---~~~~eLt~ 141 (588)
...|.+++ ||.+++++++.+||||+||||||||||++|+|+++++...++..+||||++||+||++ +++++|++
T Consensus 79 ~~~~~~ag---pr~~i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~ 155 (487)
T 2hig_A 79 PLLCELAA---ARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHR 155 (487)
T ss_dssp CCEEEECC---CBSEESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECH
T ss_pred hHHHHHcC---CcceeeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCH
Confidence 34799998 9999999999999999999999999999999999999765555699999999999964 69999999
Q ss_pred hhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccC
Q 007819 142 EILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (588)
Q Consensus 142 ~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDN 221 (588)
+.++.|+++||+ +|||+|.+.+ .++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||
T Consensus 156 ~~V~~i~~~GGT-iLGTsR~~~~----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDN 230 (487)
T 2hig_A 156 GRVTNIHHYGGT-ILGSSRGPQD----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDN 230 (487)
T ss_dssp HHHTTGGGSSSC-SSCCCCSCCC----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTS
T ss_pred HHHHHHHhCCCC-eeccCCCCCC----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccC
Confidence 999999999999 9999999863 35999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcc-ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCC
Q 007819 222 DLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE-KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 300 (588)
Q Consensus 222 DL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~-kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEG 300 (588)
||++|| +|||||||+++++++|++|++||.||+ +++|+|.|| |+.++.. +...++. | +..+|||||-
T Consensus 231 Dl~gTD--~T~GFdTAv~~~~eaId~i~~tA~Sh~~rv~vVEVMG-R~aG~LA----l~agLA~----g-~ad~ilIPE~ 298 (487)
T 2hig_A 231 DLSFSH--RTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMG-RDSGFIA----AQAAVAS----A-QANICLVPEN 298 (487)
T ss_dssp SCCCSS--CCTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEEECC-SSCCHHH----HHHHHHH----T-CCSEEECTTS
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCC-CCHHHHH----HHHHHhh----C-CCCEEEeCCC
Confidence 999998 999999999999999999999999995 799999765 5555421 1223331 2 1357777777
Q ss_pred CcCcchhHHHHHHHHHHHHhcC----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHH
Q 007819 301 LIESIPEVYALLKEIHSLLRQG----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLV 376 (588)
Q Consensus 301 l~~~ipe~~~li~el~~~l~~~----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v 376 (588)
.++ ++.+++.+.+.++.. ++++||..+ .++.. ...+|++||++++++ +++|
T Consensus 299 p~~----l~~i~~~i~~r~~~k~~~IIvVaEGag~------~~~~~---------~~~~Da~G~~~l~~i------~~~l 353 (487)
T 2hig_A 299 PIS----EQEVMSLLERRFCHSRSCVIIVAEGFGQ------DWGRG---------SGGYDASGNKKLIDI------GVIL 353 (487)
T ss_dssp CCC----HHHHHHHHHHHTTSCSEEEEEEETTTTG------GGCCC-----------CBCTTSCBCCCCH------HHHH
T ss_pred CCC----HHHHHHHHHHHHhcCCcEEEEEeCCCcc------ccccc---------ccccccccCcchhHH------HHHH
Confidence 665 456666666555432 235666431 11111 035799999999987 5666
Q ss_pred HHHHHHHHhc-CCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeec
Q 007819 377 EVEMNKRLKE-GTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAA 455 (588)
Q Consensus 377 ~~~l~~~~~~-g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~i 455 (588)
++++++++++ |. ...+|++|...+||+||||.||+||+.||+.||..|++++++|.+|+|++++|.+ +..+
T Consensus 354 ~~~i~~~~~~~g~-~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi~~~~-------i~~v 425 (487)
T 2hig_A 354 TEKVKAFLKANKS-RYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNN-------YILV 425 (487)
T ss_dssp HHHHHHHHHTTTT-TSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEEETTE-------EEEE
T ss_pred HHHHHHHHhhcCc-cccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEE
Confidence 6666655532 21 1112589999999999999999999999999999999999999999999999974 8899
Q ss_pred chHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhh
Q 007819 456 PITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNAT 500 (588)
Q Consensus 456 Pl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~ 500 (588)
||.++++.. +.||.++..|+.++..-.
T Consensus 426 Pl~ev~~~~------------------k~v~~~~~~w~~~~~~~~ 452 (487)
T 2hig_A 426 PIKVATSVR------------------RVLDLRGQLWRQVREITV 452 (487)
T ss_dssp EHHHHTTEE------------------EEECTTSHHHHHHHHHSC
T ss_pred EHHHHHccC------------------CCcCcchHHHHHHHHHhC
Confidence 999987532 468889999988776543
No 3
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.2e-69 Score=582.86 Aligned_cols=341 Identities=18% Similarity=0.227 Sum_probs=272.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCC-CCEEEEEcCchhhhhcCCeEecCHh---hHhchhhcCCccccccccC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNP-KSTLLGFLGGSEGLFAQKTLEVTKE---ILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~-~~~v~Gf~~G~~GL~~~~~~eLt~~---~v~~~~n~GGs~~lgS~R~ 161 (588)
++||||+||||||||||++|+|+++++..... ..+||||++||+||+++++++|+.. .++.++++||| +|||+|.
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGt-iLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSG-AFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSC-TTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCc-eecCCCC
Confidence 47999999999999999999999999875443 3399999999999999999999654 89999999999 9999999
Q ss_pred CC----CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhH
Q 007819 162 QI----RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (588)
Q Consensus 162 k~----~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 237 (588)
++ ++++++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||++|| +|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD--~t~GFdTA 159 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITD--CCPGFGSV 159 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSS--SCTTHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCC--CCCCchHH
Confidence 87 5889999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhhcc----ceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHH
Q 007819 238 CKVNSQLISNVCTDALSAE----KVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLK 313 (588)
Q Consensus 238 ~k~~ae~I~nl~~dA~S~~----kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~ 313 (588)
+++++++|+++..|+.|+. |++|+|.|| |+.+|.. +...++.+. .+....+|||||-.++ ++.+++
T Consensus 160 ~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMG-R~aG~lA----l~aglA~~~-~~~gad~ilIPE~~f~----~~~~~~ 229 (419)
T 3hno_A 160 AKYIAVSTLEASFDVASMSATSTKVFVLEVMG-RHAGWIA----AAGGLASSP-EREIPVVILFPEISFD----KQKFLA 229 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEECC-SSCCHHH----HGGGGGCCS-SSCCCEEEECTTSCCC----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEcCC-cChhHHH----HHHHHhccc-CCCCceEEEeCCCCCC----HHHHHH
Confidence 9999999999977766544 799999665 5555421 112222111 1123567788887776 456666
Q ss_pred HHHHHHhcC----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCC
Q 007819 314 EIHSLLRQG----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389 (588)
Q Consensus 314 el~~~l~~~----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y 389 (588)
.+++.+++. ++++||....+.. . +.++ ..+|+|||++++++ +++|++++++++ |
T Consensus 230 ~i~~~~~~~~~~iIvVaEG~~~~~g~------~----i~~~--~~~D~~G~~~l~gi------~~~la~~i~~~~--g-- 287 (419)
T 3hno_A 230 KVDSCVKKFGYCSVVVSEGVKGDDGK------F----LSDQ--GVRDAFGHAQLGGV------APVVASMVKEGL--G-- 287 (419)
T ss_dssp HHHHHHHHHSCEEEEEETTCCCSSSC------C---------------------CCS------HHHHHHHHHHHH--C--
T ss_pred HHHHHHHhCCCEEEEEeCCCcccCCc------c----hhcc--cccccccCcccCcH------HHHHHHHHHHHh--C--
Confidence 666554432 3456765543211 1 1112 36899999999998 677777787776 3
Q ss_pred CCcceeeEEecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhcc
Q 007819 390 KGKKFNAICHFFGYQARGSL--PSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 465 (588)
Q Consensus 390 ~g~~~~~~~~~lGy~~R~~~--Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e~ 465 (588)
+++|.+.|||+||||. ||+||+.||++||..|++++++|.+|+|++++|.+.++|+|++..+||.++++.++
T Consensus 288 ----~~~R~~~lGh~QRgg~p~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k 361 (419)
T 3hno_A 288 ----LKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEK 361 (419)
T ss_dssp ----CCEEEEECTHHHHSCGGGCBHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCC
T ss_pred ----CceEEcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccC
Confidence 8999999999999999 89999999999999999999999999999999999999999999999999998755
No 4
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=3.7e-67 Score=545.81 Aligned_cols=296 Identities=22% Similarity=0.295 Sum_probs=247.3
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-CCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~~~ 165 (588)
+||||+||||||||||++|+++++++. +.+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGT-FLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHH--TTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSC-TTCCCCCGGGTS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCc-ccccCCCCccCC
Confidence 699999999999999999999999986 45789999999999999999999999999999999999 99999987 668
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHH
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 245 (588)
++++++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++|| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 150 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTD--ATIGYDTACMTAMDAI 150 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCc--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 5899999999999999998 9999999999999999
Q ss_pred HHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcC---
Q 007819 246 SNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQG--- 322 (588)
Q Consensus 246 ~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~--- 322 (588)
++++.+|.|++|++|+|.|| |+.++.. +...++ .| ..+|||||-.++ ++.+++.+.+.++++
T Consensus 151 d~i~~ta~s~~rv~iVEvMG-R~aG~lA----l~a~lA----~g--a~~iliPE~~~~----~~~i~~~i~~~~~~gk~~ 215 (319)
T 1zxx_A 151 DKIRDTASSHHRVFIVNVMG-RNCGDIA----MRVGVA----CG--ADAIVIPERPYD----VEEIANRLKQAQESGKDH 215 (319)
T ss_dssp HHHHHHHHHTTCEEEEEECC-TTCCHHH----HHHHHH----TT--CSEEECTTSCCC----HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCCEEEEEeCC-CCHHHHH----HHHHHh----cC--CCEEEeCCCCCC----HHHHHHHHHHHHHcCCCc
Confidence 99999999999999998665 5555421 112222 12 345566665544 345555555444321
Q ss_pred --ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEec
Q 007819 323 --VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400 (588)
Q Consensus 323 --~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~ 400 (588)
+.++||... ++.|+++++++. | +++|.+.
T Consensus 216 ~iIvvaEG~~~-----------------------------------------~~~l~~~i~~~~--~------~~~r~~~ 246 (319)
T 1zxx_A 216 GLVVVAEGVMT-----------------------------------------ADQFMAELKKYG--D------FDVRANV 246 (319)
T ss_dssp EEEEEETTTCC-----------------------------------------HHHHHHHHHHSS--C------CCEEEEE
T ss_pred EEEEEeCCcCh-----------------------------------------HHHHHHHHHHhh--C------ceEEEec
Confidence 122333210 334556665553 2 8999999
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhc
Q 007819 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVK 464 (588)
Q Consensus 401 lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e 464 (588)
|||+||||.||+||+.||+.||..|++++++|.+|+|++++|.+ +..+||.++++.+
T Consensus 247 lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~-------~~~~pl~~~~~~~ 303 (319)
T 1zxx_A 247 LGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGK-------VTSHDILDLFDES 303 (319)
T ss_dssp CGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETTE-------EEEEEHHHHTTCC
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEEHHHHHhcC
Confidence 99999999999999999999999999999999999999999974 8899999988753
No 5
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=6.5e-67 Score=544.19 Aligned_cols=296 Identities=21% Similarity=0.316 Sum_probs=248.7
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-CC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~~ 164 (588)
.+||||+||||||||||++|+++++++. +.+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ ++
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~ 78 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSAL--TEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGT-FLGSARFPEFR 78 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH--HTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSC-TTCCCCCGGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCC-eeccCCCCCCC
Confidence 4799999999999999999999999986 35789999999999999999999999999999999998 99999987 56
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
+++++++++++|++++||+||+||||||+++|++|+|+ +++||||||||||||++|| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~a 150 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEA 150 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCc--CCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999984 5899999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcC--
Q 007819 245 ISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQG-- 322 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~-- 322 (588)
|++++.+|.||+|++|+|.|| |+.+|.. +...++ .| ..+|||||-.++ ++.+++.+.+.++++
T Consensus 151 id~i~~ta~s~~rv~iVEvMG-R~aG~lA----l~a~lA----~g--a~~iliPE~~~~----~~~i~~~i~~~~~~gk~ 215 (320)
T 1pfk_A 151 IDRLRDTSSSHQRISVVEVMG-RYCGDLT----LAAAIA----GG--CEFVVVPEVEFS----REDLVNEIKAGIAKGKK 215 (320)
T ss_dssp HHHHHHHHHHHTCEEEEEECC-TTCCHHH----HHHHHH----TT--CSEEECTTSCCC----HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCEEEEEeCC-cCHHHHH----HHHHHh----cC--CCEEEeCCCCCC----HHHHHHHHHHHHHcCCC
Confidence 999999999999999998665 5555421 112222 12 346666666554 345555555544322
Q ss_pred ---ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEe
Q 007819 323 ---VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICH 399 (588)
Q Consensus 323 ---~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~ 399 (588)
+.++||.. .++.|+++|+++. | +++|.+
T Consensus 216 ~~iIvvaEG~~-----------------------------------------~~~~la~~i~~~~--~------~~~r~~ 246 (320)
T 1pfk_A 216 HAIVAITEHMC-----------------------------------------DVDELAHFIEKET--G------RETRAT 246 (320)
T ss_dssp CEEEEEESSSS-----------------------------------------CHHHHHHHHHHHH--S------SCEEEE
T ss_pred cEEEEEeCCcc-----------------------------------------hHHHHHHHHHHHh--C------CeEEEE
Confidence 12333321 0334556666654 3 899999
Q ss_pred cCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHh-hh
Q 007819 400 FFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMM-TV 463 (588)
Q Consensus 400 ~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~-~~ 463 (588)
.|||+||||.||+||+.||+.||..|++++++|.+|+|++++|.+ +..+||.+++ +.
T Consensus 247 ~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~-------~~~~pl~~~~~~~ 304 (320)
T 1pfk_A 247 VLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQ-------LVHHDIIDAIENM 304 (320)
T ss_dssp ECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETTE-------EEEEEHHHHHHHC
T ss_pred cCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEEHHHHHhhC
Confidence 999999999999999999999999999999999999999999974 8899999998 53
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=2e-64 Score=526.50 Aligned_cols=297 Identities=22% Similarity=0.297 Sum_probs=252.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-CC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k-~~ 164 (588)
.+|||||||||||||||++|+|+++++. +++.+||||++||+||+++++++|+++.++.++++||| +|||+|.+ ++
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a~--~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt-~lgtsR~~~~~ 77 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKAI--YHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGT-KLYTARCPEFK 77 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSC-TTCCCCCHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCC-ccccCCCCccc
Confidence 3799999999999999999999999875 46789999999999999999999999999999999999 99999975 56
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
++|++++++++|++++||+||+||||||+++|++|+|+ .++||||||||||||+++| +|||||||+++++++
T Consensus 78 ~~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td--~t~GfdTA~~~~~~a 149 (319)
T 4a3s_A 78 TVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTD--FTIGFDTALNTVIDA 149 (319)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCC--CCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999985 4899999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcC--
Q 007819 245 ISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQG-- 322 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~-- 322 (588)
|++++.+|.|++|++|+|.| +|+..|.. +...++. | ..+|||||-.++ ++.+++.+.+..+++
T Consensus 150 i~~i~~~a~s~~rv~ivEvM-GR~aG~lA----~~a~la~----g--a~~iliPE~~~~----~~~~~~~i~~~~~~g~~ 214 (319)
T 4a3s_A 150 IDKIRDTATSHERTYVIEVM-GRHAGDIA----LWAGLAG----G--AESILIPEADYD----MHEIIARLKRGHERGKK 214 (319)
T ss_dssp HHHHHHHHHHHTCEEEEEEC-CTTCCHHH----HHHHHHH----T--CSEEEBTTBCCC----HHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhhhccCCeEEEEeC-CcchhHHH----HHHHhcc----C--CCEEEecCCCCC----HHHHHHHHHHHHHcCCC
Confidence 99999999999999999855 56666532 2223331 2 346888887775 566777776665543
Q ss_pred ---ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEe
Q 007819 323 ---VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICH 399 (588)
Q Consensus 323 ---~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~ 399 (588)
++++||... ...+.++++++. | +++|..
T Consensus 215 ~~iivvaEG~~~-----------------------------------------~~~~~~~~~~~~--g------~~~r~~ 245 (319)
T 4a3s_A 215 HSIIIVAEGVGS-----------------------------------------GVEFGKRIEEET--N------LETRVS 245 (319)
T ss_dssp CEEEEEETTTCC-----------------------------------------HHHHHHHHHHHH--C------CCEEEE
T ss_pred ceEEEEECCCCc-----------------------------------------chHHHHHHHHhC--C------ceEEEc
Confidence 234554321 112334455554 3 889999
Q ss_pred cCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhHhhhc
Q 007819 400 FFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVK 464 (588)
Q Consensus 400 ~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~~~~e 464 (588)
.+||.|||+.||+||+.+|++||..|++++++|.||+|++++|.+ +..+||.++++.+
T Consensus 246 ~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~~-------~~~~pl~~~~~~~ 303 (319)
T 4a3s_A 246 VLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNK-------LVDHDIIEILETK 303 (319)
T ss_dssp ECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETTE-------EEEEEHHHHSSSC
T ss_pred chhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEeHHHHHhcc
Confidence 999999999999999999999999999999999999999999885 8889999998753
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.9e-60 Score=540.17 Aligned_cols=317 Identities=17% Similarity=0.211 Sum_probs=262.1
Q ss_pred CCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC--CeEecCHhhHhchhhcCCcccccccc
Q 007819 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
...++||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++++|+++.++.|+++||+ +|||+|
T Consensus 12 ~~~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGT-iLGSsR 88 (762)
T 3o8l_A 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGT-VIGSAR 88 (762)
T ss_dssp TTSSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSC-SSCCCC
T ss_pred cccCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCc-cccCCC
Confidence 3457899999999999999999999998764 4589999999999999999 8999999999999999999 999999
Q ss_pred CC-CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH-----------------HHhcCCCceEEEeeecccCC
Q 007819 161 DQ-IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 161 ~k-~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDND 222 (588)
.+ +++++++++++++|++++||+||+||||||+++|+.|+++ +.+++.+++|||||||||||
T Consensus 89 ~~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDND 168 (762)
T 3o8l_A 89 CKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDND 168 (762)
T ss_dssp CCGGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccC
Confidence 88 5688999999999999999999999999999999988653 34566789999999999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCc
Q 007819 223 LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI 302 (588)
Q Consensus 223 L~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~ 302 (588)
+++|| +|||||||+++++++|++|+++|.||+|++|+|.|| |+..+.. +...++. | ..+|||||-.+
T Consensus 169 l~gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~Rv~iVEvMG-R~aG~LA----l~aglA~----g--ad~ilIPE~p~ 235 (762)
T 3o8l_A 169 FCGTD--MTIGTDSALHRITEIVDAITTTAQSHQRTFVLEVMG-RHCGYLA----LVTSLSC----G--ADWVFIPECPP 235 (762)
T ss_dssp CSSCS--CCBTHHHHHHHHHHHHHHHHTTCCSSCCEEEEEECC-SSCCHHH----HHHHHHH----T--CSBCCCTTSCC
T ss_pred CCCCc--CCcCchhHHHHHHHHHHHHHHhhhcCccEEEEEeCC-cchhHHH----HHHHHhc----C--CCEEEecCCCC
Confidence 99999 999999999999999999999999999999999664 5665532 1223331 2 24677777776
Q ss_pred CcchhHHHHHHHHHHHHhcC-----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHH
Q 007819 303 ESIPEVYALLKEIHSLLRQG-----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVE 377 (588)
Q Consensus 303 ~~ipe~~~li~el~~~l~~~-----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~ 377 (588)
+.- -.+.+++.+.+..+++ ++++||. .|.+|++.. ++.|+
T Consensus 236 ~~~-~~~~~~~~i~~~~~~gk~~~iVvVaEGa-------------------------~d~~G~~i~---------~~~l~ 280 (762)
T 3o8l_A 236 DDN-WEDHLCRRLSETRTRGSRLNIIIVAEGA-------------------------IDRNGKPIT---------SEGVK 280 (762)
T ss_dssp CSS-CHHHHHHHHHHHHHTTCSCCBBCEETTC-------------------------CCSSSCCCC---------HHHHH
T ss_pred Ccc-hHHHHHHHHHHHHHcCCCceEEEEeCCc-------------------------cCCCCCCcH---------HHHHH
Confidence 521 1245555555443332 2344442 245676653 34566
Q ss_pred HHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---CceEEEEecCCCCCCceeEee
Q 007819 378 VEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---NGYMATVTNLKNPANKWRCGA 454 (588)
Q Consensus 378 ~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~---tG~mv~i~n~~~~~~~w~~~~ 454 (588)
++|++++ | +++|...+||.||||.||+||+.||+.||..|++++++|. +|+|+++++.+ +..
T Consensus 281 ~~i~~~~--g------~~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~-------i~~ 345 (762)
T 3o8l_A 281 DLVVRRL--G------YDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQ-------AVR 345 (762)
T ss_dssp HHHHHHT--C------CCEEEECCCSSTTCSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTE-------EEE
T ss_pred HHHHHHh--C------CCcceeecCccccCCCCChHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCE-------EEE
Confidence 7777665 3 8999999999999999999999999999999999999999 89999999985 889
Q ss_pred cchHhHhhhcc
Q 007819 455 APITSMMTVKR 465 (588)
Q Consensus 455 iPl~~~~~~e~ 465 (588)
+||.++.+..+
T Consensus 346 ~Pl~e~~~~~k 356 (762)
T 3o8l_A 346 LPLMECVQVTK 356 (762)
T ss_dssp EEHHHHHHHHH
T ss_pred EEHHHHHhccC
Confidence 99999876543
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-58 Score=525.73 Aligned_cols=295 Identities=18% Similarity=0.231 Sum_probs=251.7
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCC---eEecCHhhHhchhhcCCccccccccCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~---~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
++||||++|||||||||++|+++++++.. .+.+||||++||+||++++ +.+|++++++.|+++||| +|||+|.+
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 79 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF--KGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGT-NIGTARCM 79 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 57999999999999999999999998863 4789999999999999996 789999999999999999 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH-----------------HhcCCCceEEEeeecccCCCC
Q 007819 163 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-----------------AEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 163 -~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~-----------------~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+++.+.+++++|++++||+||+||||||+++|++|++++ .+++.+++||||||||||||+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 80 EFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 45778899999999999999999999999999999987642 334567999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCCh-----------------------hhHHHHHHHH
Q 007819 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTL-----------------------FDLTKQICDA 281 (588)
Q Consensus 225 ~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL-----------------------~~iv~~i~~~ 281 (588)
+|| +|||||||+++++++|++|+++|.||+|++|+|.||+ +..+ .++.+.+++.
T Consensus 160 gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~RvfvVEvMGR-~aG~LAl~aglA~gAd~ilIPE~p~~~~~~~~~v~~~ 236 (766)
T 3o8o_B 160 TTD--ATIGAYSALDRICKAIDYVEATANSHSRAFVVEVMGR-NCGWLALLAGIATSADYIFIPEKPATSSEWQDQMCDI 236 (766)
T ss_dssp TCS--CCBTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCT-TCCHHHHHHHHHHTCSEEECTTCCCCTTHHHHHHHHH
T ss_pred CCC--CCCChhHHHHHHHHHHHHHHhhhhccCceEEEEcCCc-chhHHHHHHHHhcCCCEEEccCCCCChHHHHHHHHHH
Confidence 998 9999999999999999999999999999999997754 4332 3345667777
Q ss_pred HHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCc
Q 007819 282 VQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSA 361 (588)
Q Consensus 282 I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~ 361 (588)
+.+|.+.||+|+||+|+||+.+. .|+.
T Consensus 237 i~~~~~~gk~~~IVvVaEGa~~~-----------------------------------------------------~~~~ 263 (766)
T 3o8o_B 237 VSKHRSRGKRTTIVVVAEGAIAA-----------------------------------------------------DLTP 263 (766)
T ss_dssp HHHHHHTTCCCEEEEEETTCBCT-----------------------------------------------------TSCB
T ss_pred HHHHHhcCCCceEEEEeCCcccc-----------------------------------------------------cCCc
Confidence 76666667777777777776541 1111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ceEE
Q 007819 362 QLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GYMA 438 (588)
Q Consensus 362 ~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t---G~mv 438 (588)
. . ++.|++++++++ | +++|...|||.||||.||+||+.+|+.||..|++++++|.+ |+|+
T Consensus 264 ~----~-----~~~l~~~i~~~~--g------~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv 326 (766)
T 3o8o_B 264 I----S-----PSDVHKVLVDRL--G------LDTRITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDTPSPLI 326 (766)
T ss_dssp C----C-----HHHHHHHHHHTT--C------CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEE
T ss_pred c----h-----HHHHHHHHHHHh--C------CceeEcccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCCCceEE
Confidence 1 0 345566666654 3 89999999999999999999999999999999999999987 8999
Q ss_pred EEecCCCCCCceeEeecchHhHhhh
Q 007819 439 TVTNLKNPANKWRCGAAPITSMMTV 463 (588)
Q Consensus 439 ~i~n~~~~~~~w~~~~iPl~~~~~~ 463 (588)
++++.+ +..+||.+....
T Consensus 327 ~~~~~~-------i~~~pl~~~~~~ 344 (766)
T 3o8o_B 327 AVNENK-------IVRKPLMESVKL 344 (766)
T ss_dssp EESSSC-------EEEEEHHHHHHH
T ss_pred EEECCE-------EEEEEHHHHHhc
Confidence 999986 788999887654
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-58 Score=523.62 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=251.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC--CeEecCHhhHhchhhcCCccccccccCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
+++||||++|||||||||++|+++++++. +.+.+||||++||+||+++ ++.+|++++++.|+++||| +|||+|.+
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 80 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGI--HFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGT-LIGTARSM 80 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 46899999999999999999999999886 4578999999999999998 6999999999999999999 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH-----------------HhcCCCceEEEeeecccCCCC
Q 007819 163 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-----------------AEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 163 -~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~-----------------~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.+++.+.+++++|++++||+||+||||||+++|+.|++++ .+++.+++||||||||||||+
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 45778899999999999999999999999999999887532 234567999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCCh-----------------------hhHHHHHHHH
Q 007819 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTL-----------------------FDLTKQICDA 281 (588)
Q Consensus 225 ~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL-----------------------~~iv~~i~~~ 281 (588)
+|| +|||||||+++++++|++|+++|.||+|++|+|.||+ +..+ .++.+.+++.
T Consensus 161 gTD--~TiGfdTAl~~i~eaid~i~~tA~Sh~RvfvVEVMGR-~aG~LAl~agLA~gAd~ilIPE~p~~~~~~~~~v~~~ 237 (787)
T 3o8o_A 161 GTD--STIGAYSALERICEMVDYIDATAKSHSRAFVVEVMGR-HCGWLALMAGIATGADYIFIPERAVPHGKWQDELKEV 237 (787)
T ss_dssp TSS--CCEEHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCT-TCCHHHHHHHHHTTCSEEECGGGCBCTTTHHHHHHHH
T ss_pred CCC--CCCCcHHHHHHHHHHHHHHHhhhhccCceEEEEcCCc-chhHHHHHHHHhhCCCEEEeCCCCCChHHHHHHHHHH
Confidence 998 9999999999999999999999999999999997754 4332 2345677777
Q ss_pred HHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCc
Q 007819 282 VQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSA 361 (588)
Q Consensus 282 I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~ 361 (588)
+.+|...||+|+||+|+||+.+. .|+.
T Consensus 238 i~~~~~~gk~~~IVvVaEGa~~~-----------------------------------------------------~~~~ 264 (787)
T 3o8o_A 238 CQRHRSKGRRNNTIIVAEGALDD-----------------------------------------------------QLNP 264 (787)
T ss_dssp HHHHHHTTCCCEEEEEETTCBBT-----------------------------------------------------TSCB
T ss_pred HHHHHhcCCCceEEEEeCCCccc-----------------------------------------------------cCcc
Confidence 77777777777777777777541 1111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ceEE
Q 007819 362 QLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GYMA 438 (588)
Q Consensus 362 ~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t---G~mv 438 (588)
.. ++.++++|++ . | +++|...|||.||||.||+||+.+|+.||..|++++++|.+ |+|+
T Consensus 265 ~~---------~~~~~~~i~~-~--g------~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~~~~mV 326 (787)
T 3o8o_A 265 VT---------ANDVKDALIE-L--G------LDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPETPSPLI 326 (787)
T ss_dssp CC---------HHHHHHHHHH-H--T------CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred hh---------HHHHHHHHHH-h--C------CcceeeccCHhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 10 2334555655 3 4 89999999999999999999999999999999999999987 7999
Q ss_pred EEecCCCCCCceeEeecchHhHhhh
Q 007819 439 TVTNLKNPANKWRCGAAPITSMMTV 463 (588)
Q Consensus 439 ~i~n~~~~~~~w~~~~iPl~~~~~~ 463 (588)
++++.+ +..+||.+....
T Consensus 327 g~~~~~-------i~~~pl~~~~~~ 344 (787)
T 3o8o_A 327 GILENK-------IIRMPLVESVKL 344 (787)
T ss_dssp EESSSS-------EEEEEHHHHHHH
T ss_pred EEECCE-------EEEEEHHHHHhc
Confidence 999986 788999887653
No 10
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2.3e-58 Score=528.55 Aligned_cols=297 Identities=19% Similarity=0.230 Sum_probs=250.4
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCC---eEecCHhhHhchhhcCCcccccccc
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~---~~eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
..++||||++|||||||||++|+++++++. +.+.+||||++||+||++++ +.+|+++.++.|+++||| +|||+|
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~--~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGT-iLGSsR 255 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGI--YKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGT-NIGTAR 255 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHH--HTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSC-SSCCCC
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCc-eeccCC
Confidence 347899999999999999999999999885 45789999999999999986 789999999999999999 999999
Q ss_pred CCC-CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHH-----------------HHhcCCCceEEEeeecccCC
Q 007819 161 DQI-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 161 ~k~-~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDND 222 (588)
.+. .+++.+.+++++|++++||+||+||||||+++|+.|+++ ..+++.+++|||||||||||
T Consensus 256 ~~~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDND 335 (941)
T 3opy_B 256 CKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDND 335 (941)
T ss_dssp CSGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCC
Confidence 874 577889999999999999999999999999999988653 34456789999999999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCCh-----------------------hhHHHHHH
Q 007819 223 LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTL-----------------------FDLTKQIC 279 (588)
Q Consensus 223 L~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL-----------------------~~iv~~i~ 279 (588)
|++|| +|||||||+++++++|++|+++|.||+|++|+|.|| |+.++ .++.+.++
T Consensus 336 l~gTD--~TiGfdTAv~~i~eaId~I~~tA~Sh~RvfvVEVMG-R~aG~LAl~agLA~GAd~IlIPE~p~~~~~~~~~v~ 412 (941)
T 3opy_B 336 MSSTD--ATIGAFSSLDRICRAIDYIDATANSHSRAFIVEVMG-RHCGWLGLLAGLATSADYILIPEKPASSREWQDQMC 412 (941)
T ss_dssp CSSCS--SCEEHHHHHHHHHHHHHHHHSCC-CCSEEEEEECCC-SSCCHHHHHHHHHTTCSEEECTTSCCCSSCHHHHHH
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHhhhhccCceEEEEcCC-CcccHHHHHHHHhcCCCEEEECCCCCChHHHHHHHH
Confidence 99998 999999999999999999999999999999999765 44433 22345666
Q ss_pred HHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCC
Q 007819 280 DAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDD 359 (588)
Q Consensus 280 ~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~G 359 (588)
+.+.+|...||+|+||+|+||+.+. .|
T Consensus 413 ~~i~~~~~~gk~~~IVVVAEGa~~~-----------------------------------------------------~~ 439 (941)
T 3opy_B 413 DIVGKHRARGKRKTIVIVAEGAISN-----------------------------------------------------DL 439 (941)
T ss_dssp HHHHHHHHHTCCCEEEEECTTCBCT-----------------------------------------------------TC
T ss_pred HHHHHHHhcCCCcEEEEEeCCcccc-----------------------------------------------------cC
Confidence 6666666666666666666666531 11
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ce
Q 007819 360 SAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GY 436 (588)
Q Consensus 360 n~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t---G~ 436 (588)
+... ++.++++|++++ | +++|...+||.||||.||+||+.+|+.||..|++++++|.+ |+
T Consensus 440 ~~i~---------~~~l~~~i~~~~--g------~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~~g~ 502 (941)
T 3opy_B 440 SPIS---------CDQVKDVLVNRL--G------LDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDADTPSP 502 (941)
T ss_dssp CBCC---------HHHHHHHHHHTS--C------CEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTTSCCE
T ss_pred Ccch---------HHHHHHHHHHHh--C------CceeecccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCCCce
Confidence 1110 344566666654 3 89999999999999999999999999999999999999987 79
Q ss_pred EEEEecCCCCCCceeEeecchHhHhhh
Q 007819 437 MATVTNLKNPANKWRCGAAPITSMMTV 463 (588)
Q Consensus 437 mv~i~n~~~~~~~w~~~~iPl~~~~~~ 463 (588)
|+++++.+ +..+||.+....
T Consensus 503 mVg~~~~~-------iv~~Pl~e~v~~ 522 (941)
T 3opy_B 503 MIAIKEDQ-------ITRVPLVDAVEL 522 (941)
T ss_dssp EEEESSSC-------EEEEEHHHHHHH
T ss_pred EEEEECCE-------EEEEEHHHHHhc
Confidence 99999986 888999987654
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=8.5e-58 Score=522.46 Aligned_cols=296 Identities=17% Similarity=0.199 Sum_probs=245.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC--CeEecCHhhHhchhhcCCccccccccC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
..++||||++|||||||||++|+++++++. +.+.+||||++||+||+++ ++.+|+++.++.|+++||+ +|||+|.
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~--~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGT-iLGTsR~ 284 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGT-IIGTARC 284 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHH--HTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSC-SSCCCCS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-cccCCCC
Confidence 346899999999999999999999999885 3578999999999999998 5899999999999999999 9999998
Q ss_pred C-CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH-------H----------hcCCCceEEEeeecccCCC
Q 007819 162 Q-IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-------A----------EAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 162 k-~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~-------~----------~~g~~i~VIgVPKTIDNDL 223 (588)
+ +++++.+++++++|++++||+||+||||||+++|+.|++++ . +++.+++||||||||||||
T Consensus 285 ~~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl 364 (989)
T 3opy_A 285 KEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDM 364 (989)
T ss_dssp SSTTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCC
T ss_pred CcccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCC
Confidence 7 46788999999999999999999999999999999998642 2 2346799999999999999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHhhhccceEEecccccccCCh-----------------------hhHHHHHHH
Q 007819 224 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTL-----------------------FDLTKQICD 280 (588)
Q Consensus 224 ~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~kvlI~Ee~~~~~~tL-----------------------~~iv~~i~~ 280 (588)
++|| +|||||||+++++++|++|+.+|.||+|++|+|.|| |+.++ .++.+.+++
T Consensus 365 ~gTD--~TiGFdTAl~~i~eaId~I~~TA~Sh~RvfVVEVMG-R~aG~LAl~agLA~GAd~IlIPE~pf~l~~~~~~l~~ 441 (989)
T 3opy_A 365 CGTD--STIGAYSSLERIIELVDYIDATAASHSRAFVVEVMG-RHCGWLGLMSGIATGADYIFIPERPPSESNWKDDLKK 441 (989)
T ss_dssp TTCS--CCEEHHHHHHHHHHHHHHHHSSCCCTTEEEEEECCC-SSCTHHHHHHHHHHTCSEEECTTSCCCTTTHHHHHHH
T ss_pred CCCC--CCCChhhHHHHHHHHHHHHHhhhhccCceEEEEcCC-CchhHHHHHHHHhcCCCEEEeCCCCCChHHHHHHHHH
Confidence 9999 999999999999999999999999999999999665 44443 223344555
Q ss_pred HHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCC
Q 007819 281 AVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDS 360 (588)
Q Consensus 281 ~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn 360 (588)
.+.+|.+.|++|++|+|+||+.+ ..|+
T Consensus 442 ~i~k~~~~Gk~~~IVVVAEGa~~-----------------------------------------------------~~~~ 468 (989)
T 3opy_A 442 VCLRHREKGRRKTTVIVAEGAID-----------------------------------------------------DQLN 468 (989)
T ss_dssp HHHHHHHTTCCEEEEEECTTCBC-----------------------------------------------------TTSC
T ss_pred HHHHHHhcCCCceEEEEeCCccc-----------------------------------------------------cccc
Confidence 55555555555555555555543 1111
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ceE
Q 007819 361 AQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GYM 437 (588)
Q Consensus 361 ~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~t---G~m 437 (588)
.. . ++.+++.|++ . | +++|...+||.||||.||+||+.||+.||..|++++++|.+ |+|
T Consensus 469 ~i----~-----~~~l~~~l~~-~--G------~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~~g~m 530 (989)
T 3opy_A 469 PI----T-----SEEVKDVLVE-I--G------LDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPAIPSPV 530 (989)
T ss_dssp BC----C-----HHHHHHHHHT-T--T------CEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCCEE
T ss_pred cc----h-----HHHHHHHHHH-h--C------cchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHHHHHcCCCCCCCeE
Confidence 11 0 2334555543 2 3 99999999999999999999999999999999999999985 899
Q ss_pred EEEecCCCCCCceeEeecchHhHhhh
Q 007819 438 ATVTNLKNPANKWRCGAAPITSMMTV 463 (588)
Q Consensus 438 v~i~n~~~~~~~w~~~~iPl~~~~~~ 463 (588)
+++++.+ +..+||.+....
T Consensus 531 Vgl~~~~-------iv~vPl~e~v~~ 549 (989)
T 3opy_A 531 ISILENK-------IVRQPLVESVAQ 549 (989)
T ss_dssp EEESSSS-------EEEEEHHHHHHH
T ss_pred EEEECCE-------EEEEEHHHHHhc
Confidence 9999986 888999987654
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.6e-57 Score=516.26 Aligned_cols=306 Identities=17% Similarity=0.215 Sum_probs=252.1
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+++||||++|||||||||++|+++++++.. .+++||||++||+||+++++++|+++.++.|+++||| +|||+|.++
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGS-KLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSC-SSCEECCCS
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCc-eeecCCCCc
Confidence 4578999999999999999999999998863 4789999999999999999999999999999999999 999999776
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC-CCceEEEeeecccCCCCCCCCCCCCCchhHHHHHH
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 242 (588)
++++++++++|++++||+||+||||||+++|..|++++.+.+ .+|+||||||||||||++|| +|||||||+++++
T Consensus 475 --~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 475 --KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSD--FSVGADTALNTIC 550 (762)
T ss_dssp --GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCc--CCCChHHHHHHHH
Confidence 578999999999999999999999999999999999988764 47999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhh-hccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHH--
Q 007819 243 QLISNVCTDAL-SAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLL-- 319 (588)
Q Consensus 243 e~I~nl~~dA~-S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l-- 319 (588)
++|++++++|. |++|++|+|.|| |+.++.. +...|+ .| ..+|||||-.++ ++.+.++++++.
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMG-R~aG~lA----l~aglA----~g--ad~ilIPE~~~~----l~~~~~~i~~~~~r 615 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMG-GYCGYLA----TMAGLA----AG--ADAAYIFEEPFT----IRDLQANVEHLVQK 615 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECS-TTCCHHH----HHHHHH----TT--CSEEECSSSCCC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCC-cchhHHH----HHHHHh----hC--CCEEEECCCCCC----HHHHHHHHHHHHHH
Confidence 99999999997 578999999665 5565532 122333 23 357888888776 455555544433
Q ss_pred -hcC-----ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 007819 320 -RQG-----VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 393 (588)
Q Consensus 320 -~~~-----~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~ 393 (588)
+++ +.++|+...- + .++++++.++++.. ..
T Consensus 616 ~~~~~~~~iVvvaEga~~~------------------------------~--------~~~~~~~~~~~~~~-----~~- 651 (762)
T 3o8l_A 616 MKTTVKRGLVLRNEKCNEN------------------------------Y--------TTDFIFNLYSEEGK-----GI- 651 (762)
T ss_dssp HTSSCSEEEEEEETTSCSS------------------------------S--------CHHHHHHHHHHHTT-----TT-
T ss_pred HhcCCCceEEEEECCCCcc------------------------------c--------hHHHHHHHHHhhcc-----CC-
Confidence 221 2234432210 0 13344444444321 12
Q ss_pred eeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC---------------CCceEEEEecCCCCCCceeEeecchH
Q 007819 394 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAG---------------LNGYMATVTNLKNPANKWRCGAAPIT 458 (588)
Q Consensus 394 ~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G---------------~tG~mv~i~n~~~~~~~w~~~~iPl~ 458 (588)
|++|...|||.||||.||+|||.+|++||..|++++.+| .+|+|+++++.+ +..+||.
T Consensus 652 ~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~-------i~~~pl~ 724 (762)
T 3o8l_A 652 FDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLGMRKRA-------LVFQPVT 724 (762)
T ss_dssp CEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSSTTEEEEEEETTE-------EEEEEHH
T ss_pred ceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCceEEEEEECCE-------EEEEEHH
Confidence 999999999999999999999999999999999999987 789999999986 8889999
Q ss_pred hHhh
Q 007819 459 SMMT 462 (588)
Q Consensus 459 ~~~~ 462 (588)
++.+
T Consensus 725 e~~~ 728 (762)
T 3o8l_A 725 ELQN 728 (762)
T ss_dssp HHGG
T ss_pred HHhh
Confidence 9875
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-56 Score=504.01 Aligned_cols=316 Identities=16% Similarity=0.188 Sum_probs=253.0
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhh-cCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~-~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
.+++||||++|||||||||++|+++++++.. .+++||||++||+||+ ++++++|+++.++.|+++||+ +|||+|.+
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt-~LGTsR~~ 467 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGS-EIGTNRSV 467 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-TTCCBCCC
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCc-eeccCCCC
Confidence 4578999999999999999999999998753 4789999999999999 899999999999999999999 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC-CCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
+. +++++++++|++++||+||+||||||+++|+.|++++.+.+ ++++||||||||||||++|| +|||||||++++
T Consensus 468 ~~--~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD--~t~GfdTA~~~~ 543 (787)
T 3o8o_A 468 AS--EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTE--YSLGVDTCLNAL 543 (787)
T ss_dssp GG--GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHH
T ss_pred ch--hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCc--CCCCchHHHHHH
Confidence 53 46889999999999999999999999999999999865443 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhh-ccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHh
Q 007819 242 SQLISNVCTDALS-AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR 320 (588)
Q Consensus 242 ae~I~nl~~dA~S-~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~ 320 (588)
+++|++|+++|.| ++|++|+|.|| |+.++.. +...|+ .| ..+|||||-.++ ++.+++.++++.+
T Consensus 544 ~eaid~i~~ta~ss~~rv~iVEvMG-R~aG~lA----l~aglA----~g--a~~iliPE~~~~----~~~~~~~i~~~~~ 608 (787)
T 3o8o_A 544 VNYTDDIKQSASATRRRVFVCEVQG-GHSGYIA----SFTGLI----TG--AVSVYTPEKKID----LASIREDITLLKE 608 (787)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECC-TTCTHHH----HHHHHT----TT--CSEEECSSSCCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCC-CCccHHH----HHHHHh----cC--CCEEEeCCCCCC----HHHHHHHHHHHHH
Confidence 9999999999877 78999999765 5566532 122333 23 359999999887 5667766655422
Q ss_pred cCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCccc-c----hhhHHHHHHHHHHHHHHHHHhcCCCCCccee
Q 007819 321 QGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQL-S----QIETEKLLAHLVEVEMNKRLKEGTYKGKKFN 395 (588)
Q Consensus 321 ~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~l-s----~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~ 395 (588)
+.. .+.+ ++..|.+.+ + ...+ ++.|++.|+++.+.+ |+
T Consensus 609 ~~~-~~~g--------------------------~~~~~~iivvaEg~~~~~~----~~~la~~i~~~~~~~------~e 651 (787)
T 3o8o_A 609 NFR-HDKG--------------------------ENRNGKLLVRNEQASSVYS----TQLLADIISEASKGK------FG 651 (787)
T ss_dssp HHH-HCCS--------------------------CSSCCEEEEEETTSCSSSC----HHHHHHHHHHHHTTS------SE
T ss_pred HHH-Hhhc--------------------------CCCCceEEEEeCCccCCCC----HHHHHHHHHHHhCCC------ce
Confidence 100 0000 000000000 0 0001 445566666654323 99
Q ss_pred eEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------------------------CceEEEEec
Q 007819 396 AICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---------------------------------NGYMATVTN 442 (588)
Q Consensus 396 ~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~---------------------------------tG~mv~i~n 442 (588)
+|...|||.||||.||+||+.+|++||..|++++.+|. +++|+++++
T Consensus 652 ~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~ 731 (787)
T 3o8o_A 652 VRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNG 731 (787)
T ss_dssp EEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC--------------------------CGGGEEEEEEET
T ss_pred eEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEEC
Confidence 99999999999999999999999999999999998876 689999999
Q ss_pred CCCCCCceeEeecchHhHhhhcc
Q 007819 443 LKNPANKWRCGAAPITSMMTVKR 465 (588)
Q Consensus 443 ~~~~~~~w~~~~iPl~~~~~~e~ 465 (588)
.+ +..+|+.++.+.+.
T Consensus 732 ~~-------i~~~p~~~~~~~~~ 747 (787)
T 3o8o_A 732 SH-------VSFKPIANLWENET 747 (787)
T ss_dssp TE-------EEEEEHHHHTTSBC
T ss_pred CE-------EEEeeHHHHHhhcc
Confidence 85 88899999875433
No 14
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-55 Score=499.70 Aligned_cols=319 Identities=16% Similarity=0.166 Sum_probs=253.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhc-CCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA-QKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~-~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
+.+||||++|||||||||++|+++++++.. .+++||||++||+||++ +++.+|++++++.|.++||+ +|||+|.++
T Consensus 392 ~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 468 (766)
T 3o8o_B 392 KRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGS-EIGTNRVTP 468 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSC-TTCCCCCCG
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCc-eEccCCCCC
Confidence 468999999999999999999999998763 47899999999999997 78999999999999999999 999999875
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC-CCceEEEeeecccCCCCCCCCCCCCCchhHHHHHH
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 242 (588)
. ++++++++++|++++||+||+||||||+++|..|+++..+.+ .+++||||||||||||++|| +|||||||+++++
T Consensus 469 ~-~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~T~GfdTA~~~~~ 545 (766)
T 3o8o_B 469 E-EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTE--YSLGSDTALNALM 545 (766)
T ss_dssp G-GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCS--CCBTHHHHHHHHH
T ss_pred c-cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCC--CCCChhHHHHHHH
Confidence 3 346789999999999999999999999999999998654332 46999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhh-ccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHhc
Q 007819 243 QLISNVCTDALS-AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQ 321 (588)
Q Consensus 243 e~I~nl~~dA~S-~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~~ 321 (588)
++|++|+++|.| ++|++|+|.|| |+..+.. +...|+. | ..+|||||-.++ ++.+.+.++++.++
T Consensus 546 ~aid~i~~ta~ss~~rv~iVEvMG-R~aG~lA----l~aglA~----g--a~~ilIPE~~~~----~~~~~~~i~~~~~~ 610 (766)
T 3o8o_B 546 EYCDVVKQSASSTRGRAFVVDCQG-GNSGYLA----TYASLAV----G--AQVSYVPEEGIS----LEQLSEDIEYLAQS 610 (766)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEECC-TTCCHHH----HHHHHHH----T--CSEEECTTTCCC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEEEEeCC-CchhHHH----HHHHHhh----C--CCEEEeCCCCCC----HHHHHHHHHHHHHH
Confidence 999999999987 78999999665 5566532 2233332 4 359999999887 56676666543221
Q ss_pred CccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEec
Q 007819 322 GVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQL-SQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400 (588)
Q Consensus 322 ~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~l-s~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~ 400 (588)
. ..++ .++..|.+.+ +.-..+.+-++.|++.++++.+.| |++|...
T Consensus 611 ~-~~~~--------------------------~~~~~~~iivvaEg~~~~~~~~~la~~i~~~~~~~------~e~R~tv 657 (766)
T 3o8o_B 611 F-EKAE--------------------------GRGRFGKLILKSTNASKALSATKLAEVITAEADGR------FDAKPAY 657 (766)
T ss_dssp H-HHHT--------------------------TCTTCCEEEEEEGGGCSSCCHHHHHHHHHHHHTTS------CEEEEEB
T ss_pred H-hhhh--------------------------ccCCCceEEEEeCCcCCCCcHHHHHHHHHHHhCCC------ceEEEec
Confidence 0 0000 0111122211 000000011455666666654323 9999999
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------------CceEEEEecCCCCCCceeEeecchH
Q 007819 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGL----------------------NGYMATVTNLKNPANKWRCGAAPIT 458 (588)
Q Consensus 401 lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~----------------------tG~mv~i~n~~~~~~~w~~~~iPl~ 458 (588)
|||.||||.||+||+.+|++||..|++++++|. +++|+++++.+ +..+|+.
T Consensus 658 LGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~-------i~~~pi~ 730 (766)
T 3o8o_B 658 PGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSH-------VVYNSIR 730 (766)
T ss_dssp CGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSC-------CEEEEHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCE-------EEEEeHH
Confidence 999999999999999999999999999999999 89999999986 7889999
Q ss_pred hHhhhc
Q 007819 459 SMMTVK 464 (588)
Q Consensus 459 ~~~~~e 464 (588)
++.+.+
T Consensus 731 ~~~~~~ 736 (766)
T 3o8o_B 731 QLYDYE 736 (766)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 987543
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.8e-55 Score=502.07 Aligned_cols=321 Identities=14% Similarity=0.166 Sum_probs=252.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhh-cCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~-~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
.+++||||++|||||||||++|+++++++.. .+++||||++||+||+ ++++++|+++.++.|+++||+ +|||+|.+
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 645 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGS-EIGTNRTL 645 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-SSCEECCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCc-EeccCCCC
Confidence 4578999999999999999999999998753 4789999999999999 799999999999999999999 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC-CCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
+. ++++++++++|++++||+||+||||||+++|..|+++..+.+ ++++||||||||||||++|| +|||||||++++
T Consensus 646 ~~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD--~TiGfdTA~~~i 722 (941)
T 3opy_B 646 PN-DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTE--YSLGSDTCLNSF 722 (941)
T ss_dssp TT-TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCC--CCCChHHHHHHH
Confidence 53 345789999999999999999999999999999999765432 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhh-ccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHh
Q 007819 242 SQLISNVCTDALS-AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR 320 (588)
Q Consensus 242 ae~I~nl~~dA~S-~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~ 320 (588)
+++|++|+.+|.| ++|++|+|.|| |+.++.. +...|+. |- .+|||||-.++ ++.+.+.++++.+
T Consensus 723 ~eaid~i~~tA~ssh~RvfiVEvMG-R~aG~LA----l~agLA~----GA--d~ilIPE~~~~----l~~l~~~i~~l~~ 787 (941)
T 3opy_B 723 MEYCDVIKQSAAATRNRVFVVEVQG-GNSGYIA----THAQLAC----GA--QISYVPEEGIS----LAQLEMDINSLKE 787 (941)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECS-TTCCHHH----HHHHHHH----TC--SEEECTTTCCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEEeCC-cchhHHH----HHHHHhh----CC--CEEEeCCCCCC----HHHHHHHHHHHHH
Confidence 9999999999887 78999999665 5666532 2233332 43 58999999887 5667666654322
Q ss_pred cCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcc-cchhhHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEe
Q 007819 321 QGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQ-LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICH 399 (588)
Q Consensus 321 ~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~-ls~i~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~ 399 (588)
... .+.+ +...|.+. ++.=..+..-++.+++.|+++.+.| |++|..
T Consensus 788 ~~~-~~~g--------------------------~~~~~~iIvvaEga~~~~~~~~la~~i~~~~~~g------~e~R~t 834 (941)
T 3opy_B 788 SFA-NDQG--------------------------KTKSGRLILKSENASKVLTTEVISTIIDDEASGR------FDSKTA 834 (941)
T ss_dssp HHH-TCTT--------------------------SCCCCEEEEEEGGGCSSSCHHHHHHHHHHHHTTS------SEEEEE
T ss_pred HHh-hhhc--------------------------CCCCceEEEEeCCccCCCCHHHHHHHHHHHhCCC------ceeEEc
Confidence 100 0000 00001000 0000000001445566666654323 999999
Q ss_pred cCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC--------------------CceEEEEecCCCCCCceeEeecchHh
Q 007819 400 FFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL--------------------NGYMATVTNLKNPANKWRCGAAPITS 459 (588)
Q Consensus 400 ~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~--------------------tG~mv~i~n~~~~~~~w~~~~iPl~~ 459 (588)
.+||.||||.||+|||.+|++||..|++++.+|. +++|+++++.+ +..+|+.+
T Consensus 835 vLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~-------i~~~pi~e 907 (941)
T 3opy_B 835 IPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQ-------LRFTPIRQ 907 (941)
T ss_dssp CCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-C-------EEEEEHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCE-------EEEEEHHH
Confidence 9999999999999999999999999999999998 89999999986 88899999
Q ss_pred Hhhhcc
Q 007819 460 MMTVKR 465 (588)
Q Consensus 460 ~~~~e~ 465 (588)
+.+.+.
T Consensus 908 ~~~~~~ 913 (941)
T 3opy_B 908 LYDFES 913 (941)
T ss_dssp HHHTSC
T ss_pred HHhhcc
Confidence 876443
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.2e-53 Score=488.23 Aligned_cols=284 Identities=17% Similarity=0.201 Sum_probs=232.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhh-cCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~-~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
.+++||||++|||||||||++|+++++++. +.+++||||++||+||+ ++++++|+++.++.|+++||+ +|||+|.+
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 672 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS-EIGTNRSL 672 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSC-SSCCBCCC
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCc-EeccCCCC
Confidence 457899999999999999999999999875 45789999999999999 999999999999999999999 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC-CCceEEEeeecccCCCCCCCCCCCCCchhHHHHH
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 241 (588)
. .+++++++++|++++||+||+||||||+++|+.|++++.+.+ ++|+||||||||||||+++| +|||||||++++
T Consensus 673 ~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD--~TiGFdTAvn~~ 748 (989)
T 3opy_A 673 P--SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTE--YSLGSDTCLNTL 748 (989)
T ss_dssp G--GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred c--hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCc--CCCChHHHHHHH
Confidence 4 357899999999999999999999999999999999765432 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhh-ccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcCcchhHHHHHHHHHHHHh
Q 007819 242 SQLISNVCTDALS-AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR 320 (588)
Q Consensus 242 ae~I~nl~~dA~S-~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe~~~li~el~~~l~ 320 (588)
+++|++|+.+|.| ++|++|+|.|| |+.++.. +...++ .|. .+|||||-.++ ++.+++.++.+.+
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMG-R~aG~LA----l~agLA----~GA--d~ilIPE~~f~----l~~l~~~i~~l~~ 813 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQG-GYSGYLA----SYAGLI----TGA--LAVYTPENPIN----LQTVQEDIELLTR 813 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECC-TTCSHHH----HHHHHH----HTC--SCEECTTSCCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCC-cchhHHH----HHHHHh----cCC--CEEEeCCCCCC----HHHHHHHHHHHHH
Confidence 9999999999985 88999999665 5666532 223333 243 46999999887 5667666654322
Q ss_pred c-----C-------ccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcCC
Q 007819 321 Q-----G-------VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGT 388 (588)
Q Consensus 321 ~-----~-------~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l~~~~~~g~ 388 (588)
. + +.++|+... . + -++.|+++|+++.+.|
T Consensus 814 ~~~~~~g~~~~~~IIvvaEga~~-------------------------~-----~--------~~~~la~~i~e~~~~~- 854 (989)
T 3opy_A 814 TYEEDDGKNRSGKIFIHNEKASK-------------------------V-----Y--------TTDLIAAIIGEAGKGR- 854 (989)
T ss_dssp HHTTCC---CCCEEEEEESSSCS-------------------------S-----S--------CHHHHHHHHHHTTTTT-
T ss_pred HHHHhccCCccceEEEEeCCCcC-------------------------C-----C--------CHHHHHHHHHHhcCCC-
Confidence 1 0 112222110 0 0 0455667776664322
Q ss_pred CCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 007819 389 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL 433 (588)
Q Consensus 389 y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~ 433 (588)
|++|...|||.||||.||+|||.+|++||..|++++.++.
T Consensus 855 -----~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~ 894 (989)
T 3opy_A 855 -----FESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDAN 894 (989)
T ss_dssp -----SCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGG
T ss_pred -----ceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999876
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=88.90 E-value=0.7 Score=46.47 Aligned_cols=90 Identities=20% Similarity=0.076 Sum_probs=52.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
.+||+|+.-.+ .+.....+..+.+.+++. +.+++.......++- ..|.. .. .
T Consensus 5 mkki~ii~np~-~~~~~~~~~~i~~~l~~~--g~~v~~~~~~~~~~~-----------------~~~~~-------~~-~ 56 (292)
T 2an1_A 5 FKCIGIVGHPR-HPTALTTHEMLYRWLCDQ--GYEVIVEQQIAHELQ-----------------LKNVP-------TG-T 56 (292)
T ss_dssp CCEEEEECC--------CHHHHHHHHHHHT--TCEEEEEHHHHHHTT-----------------CSSCC-------EE-C
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHHHHHC--CCEEEEecchhhhcc-----------------ccccc-------cc-c
Confidence 47899998866 367778888888888653 556665543322210 01110 00 1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.+ . ...+.|.+|++|||||+-.|+.... +.+++++|||
T Consensus 57 ~~-------~-~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 57 LA-------E-IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp HH-------H-HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred hh-------h-cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 11 1 2236899999999999988875432 2358999998
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=88.48 E-value=0.32 Score=48.80 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcC-------CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 168 QVNAALTACKNLN-------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 168 ~~~~i~~~l~~l~-------Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
-.+++.+.|++.+ .|.+|++|||||+-.|+.... ....+++|+|||-
T Consensus 16 ~~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 3455556666654 599999999999998776532 2212589999983
No 19
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=81.28 E-value=33 Score=32.80 Aligned_cols=128 Identities=10% Similarity=0.090 Sum_probs=77.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+|||++..-.-|-...++.|+-++++.. +.++.-+ ... .
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIAL---------------------------------DAG---R 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---T
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cCC---C
Confidence 4579999999888888888999999888754 2222111 111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
+.+.....++.+...++|++|+.+.+.+... ...+.+.+.| ++||.+ |.+.+... .++++|-. .....+
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~--~~V~~D~~-~~g~~~ 114 (291)
T 3l49_A 46 NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN--PWLQKINDAG--IPLFTV----DTATPHAI--NNTTSNNY-SIGAEL 114 (291)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSCHHHHH--HHHHHHHHTT--CCEEEE----SCCCTTCS--EEEEECHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCC--CcEEEe----cCCCCCcC--ceEecChH-HHHHHH
Confidence 3345566788888999999999988754322 2234444455 678776 44443322 57777643 222233
Q ss_pred HHHHHHHhhhccceEEe
Q 007819 245 ISNVCTDALSAEKVILG 261 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~ 261 (588)
..-+......++|+.++
T Consensus 115 ~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 115 ALQMVADLGGKGNVLVF 131 (291)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCceEEEE
Confidence 33444434566676555
No 20
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=76.57 E-value=1.2 Score=45.21 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=36.5
Q ss_pred CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH--HHHHHHHHHHHH
Q 007819 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 250 (588)
Q Consensus 180 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~nl~~ 250 (588)
+.|.+|++|||||+-.|+.... +. ++|+||.. -++||-|.. +.+-+.+..+..
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~------------G~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT------------GRVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC------------SSSCTTCCBBTTBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC------------CCCccccccCHHHHHHHHHHHHh
Confidence 6799999999999988775532 33 89999983 278887654 233444444443
No 21
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=75.41 E-value=16 Score=35.67 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=68.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|||++..-.-|-...++.|+-++++.. +.++.- . .+. .+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~--------------------------------~-~~~---~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFV--------------------------------Q-SAN---GN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEE--------------------------------E-ECT---TC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE--------------------------------E-CCC---CC
Confidence 468999999888899999999999888753 333221 0 111 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.....++.+...++|++|+.+.+.+.. ....+.+.+.| ++||.+ |++++...++.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 106 (313)
T 3m9w_A 44 EETQMSQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDN 106 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCH
Confidence 45556678888899999999999876531 11223333344 788765 66666555445788774
No 22
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=74.96 E-value=5.3 Score=41.47 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
.+..+++.+.+++.+.|.+|-|||--.++.|..+| ++ ++ +++|.||-|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~--~~--~p~i~IPTT 119 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DE--LD--AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HH--HT--CEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-Hh--cC--CCEEEeccc
Confidence 46788899999999999999999988888888888 33 23 899999988
No 23
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=74.89 E-value=26 Score=33.59 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=66.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-.-|-...++.|+-++++.. +.++.-+. +.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~--- 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVAT---------------------------------SQ--- 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CS---
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEEC---------------------------------CC---
Confidence 44679999999888888899999999888754 33332110 11
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++|++|+.+.+..... .+.+.+.+.| ++||.+ |.+....+.-.++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 112 (293)
T 3l6u_A 48 NSRISEREQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNN 112 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCH
Confidence 13455566788888999999999987765421 2223344444 788776 55554422125677764
No 24
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=74.78 E-value=3.1 Score=43.91 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC----------------CCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK----------------CPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g----------------~~i~VIgVPKTI 219 (588)
+.+...++++.+++.+.|.+|-|||--+++.|..+|-.+...+ -.+++|.||-|-
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 6688999999999999999999999988888888876533111 348999999775
No 25
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=74.27 E-value=11 Score=36.37 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=67.2
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-..|-...++.|+-+.++.. +.++.-+. ..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~--- 47 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLAN---------------------------------TA--- 47 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT---
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---
Confidence 45679999999888888889999998888653 33332111 00
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++|++|+.+.+.... +.+.+.+. +++||. +|++.....+ .++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~--~iPvV~----~~~~~~~~~~-~~V~~D~ 109 (291)
T 3egc_A 48 EDIVREREAVGQFFERRVDGLILAPSEGEHD----YLRTELPK--TFPIVA----VNRELRIPGC-GAVLSEN 109 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCT--TSCEEE----ESSCCCCTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhcc--CCCEEE----EecccCCCCC-CEEEECc
Confidence 1334556778889999999999999876322 22333333 478884 5666654332 5677664
No 26
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=74.04 E-value=15 Score=35.27 Aligned_cols=106 Identities=10% Similarity=0.068 Sum_probs=67.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|||++..-.-|-...++.|+-+.++.. +.++.-+. +. .+
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~---~~ 56 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLTS---------------------------------TN---NN 56 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT---TC
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---CC
Confidence 379999999988899999999999888753 33332111 11 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHH-HHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNT-DAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~-~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+...+.++.+...++|++|+.+.+.+.. ....+.+.+.+.| ++||.+ |.+.....+ .++++|-
T Consensus 57 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 121 (298)
T 3tb6_A 57 PDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAA-PSFTLDD 121 (298)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSS-CEEEECH
T ss_pred hHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCC-CEEEeCc
Confidence 34556778888899999999999875421 1112223344454 688754 555554332 4677664
No 27
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=73.85 E-value=24 Score=33.39 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=64.5
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
.+|||++..-..|-...++.|+-++++.. +.++.- ...... .+.
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~---------------------------------~~~~~~-~~~ 44 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--GVTLLH---------------------------------RSTKDD-GDI 44 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--TCEEEE---------------------------------CCCSST-TCH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE---------------------------------ECCCCC-CCH
Confidence 37999999888899999999999888753 222220 000011 234
Q ss_pred HHHHHHHHHHHHcC-CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 167 EQVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 167 e~~~~i~~~l~~l~-Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.....++.+...+ +|++|+.+-+..... ...+.+.+.| ++||.+ |++........++++|-
T Consensus 45 ~~~~~~i~~l~~~~~vdgii~~~~~~~~~~--~~~~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~ 107 (276)
T 3ksm_A 45 AGQIQILSYHLSQAPPDALILAPNSAEDLT--PSVAQYRARN--IPVLVV----DSDLAGDAHQGLVATDN 107 (276)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCSSTTTTH--HHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEECCH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCHHHHH--HHHHHHHHCC--CcEEEE----ecCCCCCCcceEEccCH
Confidence 55566778888888 999999986533211 1223334444 788765 45554433224566663
No 28
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=73.75 E-value=28 Score=33.28 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=67.3
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-.-|-...++.|+-++++.. +.++.-+. ..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~--- 46 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLFD---------------------------------AN--- 46 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEEE---------------------------------CT---
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---
Confidence 45679999998888888899999998887643 33332111 11
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++||+|+.+.+. . ...+.+.+.+ ++||.+ |+++....+ .++++|-
T Consensus 47 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 107 (276)
T 3jy6_A 47 ADIEREKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQQ--MPVVSV----DREMDACPW-PQVVTDN 107 (276)
T ss_dssp TCHHHHHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTTS--SCEEEE----SCCCTTCSS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHCC--CCEEEE----ecccCCCCC-CEEEECh
Confidence 1234456778889999999999999887 2 2233444444 788765 555544332 5667663
No 29
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.46 E-value=21 Score=34.29 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCCeEEEEEecC-----CCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccc
Q 007819 84 HPAIRVGIVFCG-----RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 158 (588)
Q Consensus 84 ~~~~~IgIv~sG-----G~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS 158 (588)
.+..+|||++.. -.-|-...++.|+.++++.. +.++.- ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~ 50 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALYM---------------------------------ST 50 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEEE---------------------------------CC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEEE---------------------------------Ee
Confidence 456799999998 78888999999999888653 332211 00
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 159 ~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+. .+.+....+++.+...++||+|+.+.+.+.. ..+.+.+.| ++||. +|++......-.++++|-
T Consensus 51 ~~---~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~----~~~~~~~~~~~~~V~~D~ 115 (292)
T 3k4h_A 51 GE---TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVL----IGKPYDRKDEITYVDNDN 115 (292)
T ss_dssp CC---SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEE----ESCCSSCTTTSCEEECCH
T ss_pred CC---CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEE----ECCCCCCCCCCCEEEECc
Confidence 11 1234456788889999999999998876532 233344455 67775 456655432125677664
No 30
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=73.09 E-value=68 Score=30.81 Aligned_cols=168 Identities=11% Similarity=0.026 Sum_probs=91.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+.++|+++.....-|-...++.|+-++++.. +.++.-+ ..+. .
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~--------------------------------~~~~---~ 45 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYR--------------------------------GAAQ---Y 45 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEE--------------------------------ECSS---S
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEe--------------------------------CCCc---C
Confidence 3578999999999999999999999988754 3333211 1111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHH
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 244 (588)
+.+...+.++.+...++|++|+.+.+.+... . ..+.+.+.| ++||.+ |++.++...-.++++|-. .....+
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~-~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~ 116 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAISAIDPVELT-D-TINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNA 116 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEECCSSTTTTH-H-HHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH-H-HHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHH
Confidence 3455667788888899999999987765211 1 123333344 788754 555554321267887753 222233
Q ss_pred HHHHHHHhhhccceEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 245 ISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 245 I~nl~~dA~S~~kvlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
..-+......++|+.++-. ....+..+-.+.+.+++.+ .|.++-++.+-++-..
T Consensus 117 ~~~l~~~~~g~~~i~~i~~--~~~~~~~~R~~gf~~~l~~---~~~~~~~~~~~~~~~~ 170 (305)
T 3g1w_A 117 AYKMAELLDGEGEVAVITL--PNQLNHQERTTGFKETLEA---EFPAIEVIAVEDGRGD 170 (305)
T ss_dssp HHHHHHHTTTCEEEEEEEC--TTCHHHHHHHHHHHHHHHH---HCTTEEEEEEEECTTC
T ss_pred HHHHHHHhCCCcEEEEEeC--CCcccHHHHHHHHHHHHHh---hCCCCEEEEEecCCCC
Confidence 3333333334566444421 1111212212333333332 3556666666555433
No 31
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=71.54 E-value=5.5 Score=41.65 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. + .+++|.||-|- .|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY-AG 124 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS-SC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc-cc
Confidence 56889999999999999999999998888888888753 3 38999999998 54
No 32
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=71.47 E-value=5.8 Score=41.79 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|- + + .+++|.||-|
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~-~--~--~~p~i~IPTT 139 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAI-D--T--GARIVIAPTI 139 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-H--T--TCEEEECCSS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHH-h--c--CCCEEEecCc
Confidence 4578899999999999999999999888888888873 2 2 4899999988
No 33
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=71.47 E-value=2.3 Score=43.24 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=25.4
Q ss_pred cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 179 l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.+.|.+|++|||||+-.|+..... . +++++|||
T Consensus 74 ~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 74 DGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 478999999999999888765432 2 47999998
No 34
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=71.31 E-value=2.2 Score=44.95 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=68.2
Q ss_pred CCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcc----cccc
Q 007819 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD----MLGR 158 (588)
Q Consensus 83 ~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~----~lgS 158 (588)
...+++|+||.== ..|.....+..+++.|... +.+||-=. ++. +.+. +.+.-.+. -...
T Consensus 35 ~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~~--~~~V~ve~---------~~~----~~~~-~~~~~~~~~~~~~~~~ 97 (365)
T 3pfn_A 35 NKSPKSVLVIKKM-RDASLLQPFKELCTHLMEE--NMIVYVEK---------KVL----EDPA-IASDESFGAVKKKFCT 97 (365)
T ss_dssp SSCCCEEEEEECT-TCGGGHHHHHHHHHHHHHT--SCEEEEEH---------HHH----HSHH-HHHCSTTHHHHHHCEE
T ss_pred CCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHC--CCEEEEeh---------HHh----hhhc-cccccccccccccccc
Confidence 3457899999763 4578888899999988753 45554211 100 0000 00000000 0000
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHH
Q 007819 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (588)
Q Consensus 159 ~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 238 (588)
.+..... ...+.|.+|++|||||+-.|+.+.. +..++|+||= . -++||=|-.
T Consensus 98 ~~~~~~~-----------~~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN---------~---G~LGFLt~~ 149 (365)
T 3pfn_A 98 FREDYDD-----------ISNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFH---------L---GSLGFLTPF 149 (365)
T ss_dssp ECTTTCC-----------CTTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEE---------S---SSCTTTCCE
T ss_pred cccChhh-----------cccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEc---------C---CCCccceee
Confidence 0011110 1147899999999999999887642 4468999995 1 377886642
Q ss_pred --HHHHHHHHHHHH
Q 007819 239 --KVNSQLISNVCT 250 (588)
Q Consensus 239 --k~~ae~I~nl~~ 250 (588)
+-+.+.+..+..
T Consensus 150 ~~~~~~~~l~~vl~ 163 (365)
T 3pfn_A 150 SFENFQSQVTQVIE 163 (365)
T ss_dssp ESTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHc
Confidence 234444554443
No 35
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=70.28 E-value=4.1 Score=42.48 Aligned_cols=57 Identities=26% Similarity=0.226 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHh-------------cCCCceEEEeeecccC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTLNG 221 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~-------------~g~~i~VIgVPKTIDN 221 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|-.+.. ..-.+++|.||-|--.
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt 152 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGT 152 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCch
Confidence 67889999999999999999999999888888888775431 0025899999988433
No 36
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=69.62 E-value=7.4 Score=40.40 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND 222 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|-. + .+++|.||-|- .|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa-tg 123 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY-AG 123 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS-CC
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc-hh
Confidence 45788999999999999999999998888888877753 3 48999999997 54
No 37
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=69.52 E-value=33 Score=33.03 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=57.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
+.+||+++..-.-|=...++.|+-++++.. +.+++ +. .+ .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~----~~ 42 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVI--------------------------------KI-AV----PD 42 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--TEEEE--------------------------------EE-EC----CS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--CCEEE--------------------------------Ee-CC----CC
Confidence 468999999888888889999998888754 22211 11 11 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.+...+.++.+...++|++|+.+-+..... .+.+.+.+.| ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 43 GEKTLNAIDSLAASGAKGFVICTPDPKLGS--AIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGHH--HHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchhhH--HHHHHHHHCC--CcEEEe
Confidence 455566788888899999999987765322 2223344444 788764
No 38
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=69.29 E-value=6.1 Score=41.18 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|-. + .+++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 56788999999999999999999998888888888753 3 47999999885
No 39
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=69.26 E-value=7.2 Score=40.85 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeecccCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLNGD 222 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTIDND 222 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|-.+... .-.+++|.||-|.-.|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 568899999999999999999999988888888887665211 1148999999887543
No 40
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=68.63 E-value=45 Score=31.52 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+||+++..-..|-...++.|+-+.++.. +.++ ++..+. .+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~---------------------------------~~~~~~---~~ 44 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--GYQL---------------------------------LLGYSD---YS 44 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--SCEE---------------------------------CCEECT---TC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--CCEE---------------------------------EEEcCC---CC
Confidence 458999998777788888888888887643 2221 111111 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+...+.++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 45 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 104 (275)
T 3d8u_A 45 IEQEEKLLSTFLESRPAGVVLFGSEHSQRTH----QLLEASN--TPVLEI----AELSSKASY-LNIGVDH 104 (275)
T ss_dssp HHHHHHHHHHHHTSCCCCEEEESSCCCHHHH----HHHHHHT--CCEEEE----SSSCSSSSS-EEECBCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE----eeccCCCCC-CEEEECh
Confidence 3445567888888999999999887653222 2333344 678775 444433222 5677774
No 41
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=68.33 E-value=6.4 Score=40.21 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 176 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 176 l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+...+.|.+|++|||||+..+..-.... ..+.++++..||.==-||+.
T Consensus 78 ~~~~~~d~vvv~GGDGTl~~v~~~l~~~-~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 78 ARKFGVATVIAGGGDGTINEVSTALIQC-EGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHC-CSSCCCEEEEEECSSSCHHH
T ss_pred HHhcCCCEEEEEccchHHHHHHHHHhhc-ccCCCCeEEEecCcCHHHHH
Confidence 3345789999999999988765443210 01456888889965556654
No 42
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=68.31 E-value=1.7 Score=43.19 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=25.9
Q ss_pred cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 179 l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.+.|.+|++|||||+-.|+.... + +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEE
Confidence 37899999999999988775432 3 68999998
No 43
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=67.79 E-value=71 Score=30.46 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=67.6
Q ss_pred CCCeEEEEEecCC-CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 84 HPAIRVGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 84 ~~~~~IgIv~sGG-~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
.+..+|||++..- ..|-...++.|+-++++.+. +..+. +......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-g~~~~---------------------------------~~~~~~~ 51 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-DFNIS---------------------------------ANITHYD 51 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-GGCEE---------------------------------EEEEEEC
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-hCCeE---------------------------------EEEEcCC
Confidence 4568999999887 88889999999998886430 11111 1111111
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
-.+++.....++.+...++||+|+.+.+..... .+.+.+.+.| ++||.+ |++++....-.++++|-
T Consensus 52 ~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 117 (304)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK--GFTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNS 117 (304)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH--HHHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH--HHHHHHHHCC--CeEEEE----eCCCCCCCceEEEecCh
Confidence 124566677889999999999999988754211 1123333344 677754 55555432125677764
No 44
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=67.35 E-value=7.6 Score=40.47 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcC---------------CCceEEEeeeccc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK---------------CPTKVVGVPVTLN 220 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g---------------~~i~VIgVPKTID 220 (588)
+.+..+++++.+++.+.|.+|-|||--.++.|..+|-.+...+ -.+++|.||-|.-
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 6788999999999999999999999988888888877652111 1589999998774
No 45
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=67.19 E-value=1.9 Score=45.74 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC-
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ- 162 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k- 162 (588)
..+++|+|+.==+ -+.....+..+.+.+...+++.+|+- +....+.... .+..-+..+..
T Consensus 39 ~~~k~V~II~n~~-~~~~~~~~~~l~~~L~~~~~gi~V~v----------------e~~~a~~l~~--~~~~~~~~~~~~ 99 (388)
T 3afo_A 39 NPLQNVYITKKPW-TPSTREAMVEFITHLHESYPEVNVIV----------------QPDVAEEISQ--DFKSPLENDPNR 99 (388)
T ss_dssp SCCCEEEEEECTT-CHHHHHHHHHHHHHHHHHCTTCEEEC----------------CHHHHHHHHT--TCCSCGGGCTTS
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhCCCeEEEE----------------eCchhhhhhh--hccccccccccc
Confidence 3467899998744 36667778888888877665666542 1111111100 00000000000
Q ss_pred -----CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCc-eEEEee
Q 007819 163 -----IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVP 216 (588)
Q Consensus 163 -----~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i-~VIgVP 216 (588)
....+. + ..+.|.+|++|||||+-.|+.... +.++ +|+||+
T Consensus 100 ~~~~~~~~~~~---~-----~~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN 146 (388)
T 3afo_A 100 PHILYTGPEQD---I-----VNRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFA 146 (388)
T ss_dssp CEEEEECCHHH---H-----HHHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEE
T ss_pred cccccccchhh---c-----ccCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEE
Confidence 001111 1 235899999999999999886532 2356 799997
No 46
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=67.08 E-value=20 Score=34.41 Aligned_cols=81 Identities=7% Similarity=0.038 Sum_probs=57.3
Q ss_pred CCCEEEEEcCchhhhhcCC---------eEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEe
Q 007819 117 PKSTLLGFLGGSEGLFAQK---------TLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187 (588)
Q Consensus 117 ~~~~v~Gf~~G~~GL~~~~---------~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviI 187 (588)
....++|.=+|..-|++.. +=-++++....|...| . ++-....| +.-+++++++.+.+++.+-++++
T Consensus 21 ~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~-i~~~p~eK--D~TD~e~Al~~a~~~~~~~I~i~ 96 (212)
T 3l8m_A 21 KHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-E-INPYNSEK--DDTDLALGIDQAVKRGYRNIDVY 96 (212)
T ss_dssp TTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-B-CCCCC-----CBCHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-c-EEEECCcC--CCCHHHHHHHHHHHCCCCEEEEE
Confidence 4568999999998887643 3356777777888776 3 44332222 34578999999999999999999
Q ss_pred cCcc-----cHHHHHHHHH
Q 007819 188 GGVT-----SNTDAAYLAE 201 (588)
Q Consensus 188 GGdd-----S~~~A~~Lae 201 (588)
|+-| ++.+...|..
T Consensus 97 Ga~GgR~DH~lani~ll~~ 115 (212)
T 3l8m_A 97 GATGGRLDHFMGALQILEK 115 (212)
T ss_dssp SCSSSCHHHHHHHHHHHTC
T ss_pred cCCCCchhHHHHHHHHHHh
Confidence 9977 4555555544
No 47
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=67.08 E-value=54 Score=31.17 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=60.9
Q ss_pred CCCeEEEEEecC--CCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccC
Q 007819 84 HPAIRVGIVFCG--RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 84 ~~~~~IgIv~sG--G~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
.+..+||+++.. -..|-...++.|+-++++.. +.++. +....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~- 60 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------------------------LADGK- 60 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCT-
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC-
Confidence 345789999977 67788888999998887642 22211 11111
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHh-cCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-AKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 162 k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~-~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++|++|+.+.+.+.. .+ +.+.+ .+ ++||.+ |.+.....+ .++++|-
T Consensus 61 --~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 123 (296)
T 3brq_A 61 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVL----NRRLRKNSS-HSVWCDH 123 (296)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEE----SCCCSSSGG-GEECCCH
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEE----ccccCCCCC-CEEEEch
Confidence 1334455677888889999999998875432 22 33444 44 677765 343332221 4677764
No 48
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=66.84 E-value=30 Score=33.27 Aligned_cols=107 Identities=11% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+|||++..-..|-...++.|+-++++.+ +.++.-+ .+.. ..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~---------------------------------~~~~-~~ 47 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--GVNLRVL---------------------------------EAGG-YP 47 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--TCEEEEE---------------------------------ECSS-TT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCeEEEE---------------------------------cCCC-CC
Confidence 4579999999888888999999999888754 2222211 0111 11
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC-----CCCCCCCCCchh
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK-----NQFVETNVGFDT 236 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~-----~~~ie~S~GFdT 236 (588)
+.+...+.++.+...++|++|+.+.+..... ..+ +.+. . +++||.+ |+++. ......++++|-
T Consensus 48 ~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-~~~-~~~~-~--~iPvV~~----~~~~~~~~~~~~~~~~~V~~D~ 115 (304)
T 3o1i_D 48 NKSRQEQQLALCTQWGANAIILGTVDPHAYE-HNL-KSWV-G--NTPVFAT----VNQLDLDEEQSTLLKGEVGVDW 115 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSSTTSST-TTH-HHHT-T--TSCEEEC----SSCCCCCTTTGGGEEEECCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-HHH-HHHc-C--CCCEEEe----cCCCcccccCCCceEEEEecCH
Confidence 3455667788888899999999987655111 112 2232 3 4777754 55552 111225777773
No 49
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=66.67 E-value=41 Score=32.88 Aligned_cols=105 Identities=14% Similarity=0.012 Sum_probs=66.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|||++..-.-|-...++.|+-++++.+ +.++.-+ .+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 44 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--GYKTDLQ---------------------------------YAD---DD 44 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--CCEEEEe---------------------------------eCC---CC
Confidence 578999999888899999999999888753 3322211 111 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCC-CCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN-QFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~-~~ie~S~GFdT 236 (588)
.+...+.++.+...++|++|+.+-+..... ...+.+.+.| ++||.+ |++.++ ..+..++|+|-
T Consensus 45 ~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~--~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D~ 108 (330)
T 3uug_A 45 IPNQLSQIENMVTKGVKVLVIASIDGTTLS--DVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFDN 108 (330)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSGGGGH--HHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCchhHH--HHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeCH
Confidence 345566778888899999999987753211 1223344444 788765 555554 23335777663
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=65.55 E-value=25 Score=33.26 Aligned_cols=103 Identities=11% Similarity=0.119 Sum_probs=66.4
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|||++..-.-|-...++.|+-++++.. +.++.-+ .+. .+
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 43 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIA---------------------------------SSD---DQ 43 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---CC
Confidence 368999999888888999999999888753 3333211 011 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.....++.+...++|++|+.+.+.... . ..+.+.+.| ++||. +|++.....+ .++++|-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~-~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~d~ 104 (272)
T 3o74_A 44 PDSERQLQQLFRARRCDALFVASCLPPED--D-SYRELQDKG--LPVIA----IDRRLDPAHF-CSVISDD 104 (272)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC--C-HHHHHHHTT--CCEEE----ESSCCCTTTC-EEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccH--H-HHHHHHHcC--CCEEE----EccCCCcccc-CEEEEch
Confidence 35556678888999999999998874321 1 223344445 67774 5666655432 4667663
No 51
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=65.35 E-value=4.4 Score=43.36 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=27.2
Q ss_pred eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCcC
Q 007819 258 VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 303 (588)
Q Consensus 258 vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~~ 303 (588)
++|+| ... + ++.+++.|++|.+. ++|++|+|+||+.+
T Consensus 215 ilIPE-~~f---~----~~~~~~~i~~~~~~-~~~~iIvVaEG~~~ 251 (419)
T 3hno_A 215 ILFPE-ISF---D----KQKFLAKVDSCVKK-FGYCSVVVSEGVKG 251 (419)
T ss_dssp EECTT-SCC---C----HHHHHHHHHHHHHH-HSCEEEEEETTCCC
T ss_pred EEeCC-CCC---C----HHHHHHHHHHHHHh-CCCEEEEEeCCCcc
Confidence 56665 443 3 35677888888776 56899999999986
No 52
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=65.07 E-value=7.5 Score=40.10 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++.+.+++.++ |.+|-+||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~-r--gip~i~IPTTl 121 (343)
T 3clh_A 67 NFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYF-R--GIDFINIPTTL 121 (343)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhc-c--CCCEEEeCCch
Confidence 66889999999999999 99999999888887777765432 3 48999999885
No 53
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.05 E-value=49 Score=32.66 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCeEEEEEecC--CCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccC
Q 007819 84 HPAIRVGIVFCG--RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 84 ~~~~~IgIv~sG--G~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
.+..+||+++.. -..|-...++.|+-+.++.. +.++.- ..+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~- 102 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLLL---------------------------------ADGK- 102 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--TCEEEE---------------------------------EECT-
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC-
Confidence 456799999988 67788888899998887653 332221 1111
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 162 k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++||+|+.+.+.+... +.+.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 103 --~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 165 (338)
T 3dbi_A 103 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMV----LNRRLRKNSS-HSVWCDH 165 (338)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEE----ESSCCSSSGG-GEECBCH
T ss_pred --CChHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEE----EcCCCCCCCC-CEEEECh
Confidence 13344455778889999999999998766432 334444444 67774 4666654332 4666663
No 54
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=64.27 E-value=7 Score=41.02 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHcC---CcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeeccc
Q 007819 165 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLN 220 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~---Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTID 220 (588)
+.+..+++++.+++.+ .|.+|-|||--+++.|..+|-.+... +-.+++|.||-|--
T Consensus 91 t~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 91 TTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp BHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 6788999999999998 99999999998888888887654211 11479999997753
No 55
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=64.26 E-value=11 Score=39.19 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhc-------------CCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~-------------g~~i~VIgVPKTI 219 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|-..... +-.+++|.||-|-
T Consensus 77 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 678899999999999999999999998888888887642110 1247999999777
No 56
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=64.12 E-value=7.5 Score=40.16 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++.+.+++.++ |.+|-|||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 66889999999999999 9999999988888887777543 23 48999999776
No 57
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=61.19 E-value=10 Score=40.02 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHH---------h-c---CCCceEEEeeeccc
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA---------E-A---KCPTKVVGVPVTLN 220 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~---------~-~---g~~i~VIgVPKTID 220 (588)
+.+..+++++.+++.+.|.+|-|||--+++.|..+|-.+. . . .-.+++|.||-|--
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 5688999999999999999999999988888888876431 0 0 12579999997753
No 58
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=60.85 E-value=31 Score=33.22 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=61.5
Q ss_pred CCCeEEEEEecCCCc--ccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccC
Q 007819 84 HPAIRVGIVFCGRQS--PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 84 ~~~~~IgIv~sGG~a--PG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
.+..+|||++..-.- |=...++.|+-+.++.. +..+.-+. ...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~~ 50 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTT--QYHLVVTP---------------------------------HIH 50 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTS--SCEEEECC---------------------------------BSS
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHc--CCEEEEec---------------------------------CCc
Confidence 345789999987654 88888899988877532 33332110 000
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 162 k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+....+.+.+...++||+|+.+.+.+... .+.+.+.| ++||. +|++.....+ .++++|-
T Consensus 51 ---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~----i~~~~~~~~~-~~V~~D~ 111 (288)
T 3gv0_A 51 ---AKDSMVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVT----HGRSDMGIEH-AFHDFDN 111 (288)
T ss_dssp ---GGGTTHHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEE----ESCCCSSCCC-EEEEECH
T ss_pred ---chhHHHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEE----ECCcCCCCCC-cEEEeCc
Confidence 0111234556678899999999986654322 23344444 78874 5666554432 5677764
No 59
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=60.70 E-value=11 Score=39.57 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcC--C---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLN--L---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~--I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+.++++.+.+.+.+ + |.+|-+||--.++.|..+|-.+ .+| +++|.||-|.
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 85 SRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp SHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 5688999999999999 9 9999999988888777777543 245 7999999775
No 60
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=60.57 E-value=61 Score=32.13 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=58.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-.-|-...++.|+-+.++.. +..++-+ .+.
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~--- 107 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDT--ELQPVVG---------------------------------VTD--- 107 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSS--SSEEEEE---------------------------------ECT---
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---
Confidence 44579999998888888888999998877532 4433211 111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.+.+...+.++.+...++||+|+.+.+.+.. +.+.+.+.+ ++||.+
T Consensus 108 ~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 108 YLPEKEEKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp TCHHHHHHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 1234456678888899999999998776542 223344455 677766
No 61
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=60.51 E-value=1.2e+02 Score=29.04 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=66.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+|||++..-..|-...++.|+-++++.. +.++. +.... ...+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~-~~~~ 46 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--KVDLQ---------------------------------ILAPP-GAND 46 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EECCS-SSCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--CcEEE---------------------------------EECCC-CcCC
Confidence 468999999888899999999999888753 22221 10000 0124
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCC---CCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ---FVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~---~ie~S~GFdT 236 (588)
.+...+.++.+...++|++|+.+.+..... ...+.+.+.| ++||.+ |++.... ..-.++++|-
T Consensus 47 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~~~V~~D~ 112 (297)
T 3rot_A 47 VPKQVQFIESALATYPSGIATTIPSDTAFS--KSLQRANKLN--IPVIAV----DTRPKDKTKNPYLVFLGSDN 112 (297)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCSSTTH--HHHHHHHHHT--CCEEEE----SCCCSCTTTSCCSCEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH--HHHHHHHHCC--CCEEEE----cCCCccccccCcceEEccCh
Confidence 556677888899999999999887665221 1123333344 788765 4444431 1125666664
No 62
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=59.90 E-value=73 Score=30.52 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=61.3
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-..|-...++.|+-++++.. +.++. +.....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~-- 48 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV--HRHVV---------------------------------VATGCG-- 48 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCCS--
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCCC--
Confidence 34568999998777787888888988887643 23221 101111
Q ss_pred CChHHHHH---HHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNA---ALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~---i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+.... .++.+...++|++++.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 -~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 112 (290)
T 2rgy_A 49 -ESTPREQALEAVRFLIGRDCDGVVVISHDLHDED---L-DELHRMH--PKMVFL----NRAFDALPD-ASFCPDH 112 (290)
T ss_dssp -SSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---H-HHHHHHC--SSEEEE----SSCCTTSGG-GEECCCH
T ss_pred -chhhhhhHHHHHHHHHhcCccEEEEecCCCCHHH---H-HHHhhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 1122334 677788899999999998766322 2 2333344 677765 444433221 4677664
No 63
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=59.46 E-value=81 Score=30.22 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-..|-...++.|+-++++.. +.++. +..+.
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 55 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--KYNII---------------------------------LSNSD--- 55 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34579999998777788888899998887642 22221 10111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++|++|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 56 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 117 (289)
T 2fep_A 56 QNMEKELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRSP--VPIVLA----ASVEEQEET-PSVAIDY 117 (289)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHSS--SCEEEE----SCCCTTCCS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhcC--CCEEEE----ccccCCCCC-CEEEECc
Confidence 12344556778888899999999987654322 2 2333444 678766 444333222 4677663
No 64
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=59.00 E-value=7.2 Score=40.18 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCC
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 223 (588)
+.+..+++ +.+++.+.|.+|-|||--.++.|..+| ++ ++ +++|.||-|.-.|-
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgs 126 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDG 126 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCC
Confidence 45778888 888889999999999988888888887 43 23 79999998876543
No 65
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=58.04 E-value=9.6 Score=38.88 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 174 ~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
+.....+.|.+|++|||||...+..-. .+.+.++++.+||.==-||+.
T Consensus 74 ~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 74 ERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 333445789999999999988765432 223557899999976667775
No 66
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=57.14 E-value=75 Score=30.17 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=62.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+||+++..-..|-...++.|+-++++.. +.++. +.... .
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 47 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW---N 47 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEE---------------------------------EEcCC---C
Confidence 4568999998877888888999998887643 22211 10010 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+.....++.+...++|++++.+.+.+.... +.+.+. .+++||.+ |.+.+......++++|-
T Consensus 48 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~d~ 110 (289)
T 1dbq_A 48 NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNA 110 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHH----HHHHHT-TTSCEEEE----ECSSCCSSSCEEEEECH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEEeccCCHHHH----HHHHhc-cCCCEEEE----ccCCCccCcCCEEEeCc
Confidence 33455667888888999999999987653222 233321 24788765 44433222114677663
No 67
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=55.41 E-value=64 Score=30.50 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=56.1
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-.-|-...++.|+-+.++.. +..+.-+ ...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~--- 47 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--GYQVLIG---------------------------------NSD--- 47 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--TCCEEEE---------------------------------ECT---
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---
Confidence 34578999998888888888999998888654 3333211 011
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHH-HHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE-TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae-~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++||+|+.+.+ .. . .+ .+.+.| ++||. +|++..... ++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~---~-~~~~l~~~~--iPvV~----~~~~~~~~~---~V~~D~ 106 (277)
T 3e61_A 48 NDIKKAQGYLATFVSHNCTGMISTAFN--EN---I-IENTLTDHH--IPFVF----IDRINNEHN---GISTNH 106 (277)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECGGG--HH---H-HHHHHHHC---CCEEE----GGGCC------------H
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCC--hH---H-HHHHHHcCC--CCEEE----EeccCCCCC---eEEech
Confidence 133455677888999999999999832 11 1 23 444444 67775 466655433 666664
No 68
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=55.22 E-value=78 Score=27.11 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=59.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+.+++.|+=+|+.+ ..+.+.+.. +++.++.||.+-- +.... ....|..++| +
T Consensus 3 ~~~~vlIiGaG~~g-------~~l~~~l~~-~~g~~vvg~~d~~------------~~~~g--~~i~g~pV~g-----~- 54 (141)
T 3nkl_A 3 AKKKVLIYGAGSAG-------LQLANMLRQ-GKEFHPIAFIDDD------------RKKHK--TTMQGITIYR-----P- 54 (141)
T ss_dssp CCEEEEEECCSHHH-------HHHHHHHHH-SSSEEEEEEECSC------------GGGTT--CEETTEEEEC-----G-
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHh-CCCcEEEEEEECC------------cccCC--CEecCeEEEC-----H-
Confidence 35678877666532 334444443 3588999988521 11000 0113443443 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
++ +.+.++++++|.+++--+..+......+.+.+.+.| ++|.-+|-
T Consensus 55 --~~---l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~g--v~v~~vP~ 100 (141)
T 3nkl_A 55 --KY---LERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLH--VEVLTIPN 100 (141)
T ss_dssp --GG---HHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTT--CEEEECCC
T ss_pred --HH---HHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcC--CeEEECCC
Confidence 12 345667889999888777777777788888888776 68888883
No 69
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=55.03 E-value=29 Score=33.59 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred CCEEEEEcCchhhhhcC---------CeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEec
Q 007819 118 KSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIG 188 (588)
Q Consensus 118 ~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIG 188 (588)
...++|.=+|..=|++. ++=.++++..+.|...|-. ++-....| +.-+++++++.+.+++.+-++++|
T Consensus 25 ~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~-i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~G 101 (222)
T 3lm8_A 25 HTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPA-LHVYQAEK--DQTDLDLALDWALEKQPDIIQIFG 101 (222)
T ss_dssp TEEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTT-CEEECCCS--SSCHHHHHHHHHHHHCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCe-EEEeCCCC--CCCHHHHHHHHHHHcCCCEEEEEc
Confidence 35788888888877663 3335667777777776532 44332232 345789999999999999999999
Q ss_pred Ccc-----cHHHHHHHHHHHH
Q 007819 189 GVT-----SNTDAAYLAETFA 204 (588)
Q Consensus 189 Gdd-----S~~~A~~Lae~~~ 204 (588)
+-| ++.+...|..+++
T Consensus 102 a~GgR~DH~lani~ll~~~~~ 122 (222)
T 3lm8_A 102 ITGGRADHFLGNIQLLYKGVK 122 (222)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHh
Confidence 977 5666777776643
No 70
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=54.64 E-value=13 Score=39.19 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~r--gip~I~IPTTl 159 (390)
T 3okf_A 105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QR--GVDFIQIPTTL 159 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cC--CCCEEEeCCCC
Confidence 56889999999999999 6999999988888877776432 23 48999999886
No 71
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=54.13 E-value=14 Score=38.23 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+..+++.+.+++.++ |.+|-|||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LR--GVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcH
Confidence 55788999999999998 8999999988888887777533 23 48999999774
No 72
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=54.02 E-value=54 Score=32.25 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhc------C---------CeEecCHhhHhchhhc
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA------Q---------KTLEVTKEILSTYKNQ 150 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~------~---------~~~eLt~~~v~~~~n~ 150 (588)
.++-++|+++|+-|- .+..+.+ . ..-+++.=+|..-|++ . ++=-++++..+.|...
T Consensus 20 ~~~~~lIv~ng~~~~---~~~~~~~----~--~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~ 90 (247)
T 3s4y_A 20 NLKYCLVILNQPLDN---YFRHLWN----K--ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATK 90 (247)
T ss_dssp CCCEEEEECSSCCCT---THHHHHH----H--CSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHT
T ss_pred CCCEEEEEECCcchH---HHHHHHh----h--CCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhc
Confidence 345677777888773 3333332 2 3457899999877776 2 2234566777778877
Q ss_pred CCccccccccCCCCChHHHHHHHHHHHHc------CCcEEEEecCccc-----HHHHHHHHHH
Q 007819 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL------NLDGLVIIGGVTS-----NTDAAYLAET 202 (588)
Q Consensus 151 GGs~~lgS~R~k~~~~e~~~~i~~~l~~l------~Id~LviIGGddS-----~~~A~~Lae~ 202 (588)
|-. ++- ..-++.-+++++++.+.+. +.+-++++|+-|. +.+...|..+
T Consensus 91 ~~~-i~~---~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~~ 149 (247)
T 3s4y_A 91 GCE-LIS---TPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQA 149 (247)
T ss_dssp TCE-EEE---CCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHHG
T ss_pred CCE-EEE---CCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHHH
Confidence 643 542 2223445788888887654 7899999999774 4455555444
No 73
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=52.87 E-value=82 Score=30.57 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=54.6
Q ss_pred cCCCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccC
Q 007819 82 TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 82 ~~~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
....++||+|+.||.+. ....+++++.....+.+|.++.--.. +..+..+...=|-...--...
T Consensus 18 ~~~~~~rI~~l~SG~g~-----~~~~~l~~l~~~~~~~~I~~Vvt~~~-----------~~~~~~~A~~~gIp~~~~~~~ 81 (229)
T 3auf_A 18 FQGHMIRIGVLISGSGT-----NLQAILDGCREGRIPGRVAVVISDRA-----------DAYGLERARRAGVDALHMDPA 81 (229)
T ss_dssp CBTTCEEEEEEESSCCH-----HHHHHHHHHHTTSSSEEEEEEEESST-----------TCHHHHHHHHTTCEEEECCGG
T ss_pred ccCCCcEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEcCCC-----------chHHHHHHHHcCCCEEEECcc
Confidence 34456899999999853 34556665543322456666652100 011122222223323322233
Q ss_pred CCCChHHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 162 QIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 162 k~~~~e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
++.+.+.+ +.+++.+++++.|.+|+.| .+-.-....|..
T Consensus 82 ~~~~r~~~~~~~~~~l~~~~~Dliv~ag-y~~IL~~~~l~~ 121 (229)
T 3auf_A 82 AYPSRTAFDAALAERLQAYGVDLVCLAG-YMRLVRGPMLTA 121 (229)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCSEEEESS-CCSCCCHHHHHH
T ss_pred cccchhhccHHHHHHHHhcCCCEEEEcC-hhHhCCHHHHhh
Confidence 34444444 4578899999999776664 555444455543
No 74
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=52.71 E-value=16 Score=38.33 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+.++++.+.+.+.++ |.+|-+||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~-rg--ip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWL-RG--VSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGG-GC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhc-cC--CcEEEECCCC
Confidence 55788999999998875 99999999888888887775432 44 8999999885
No 75
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=51.35 E-value=50 Score=31.42 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCC--cccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 85 PAIRVGIVFCGRQ--SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 85 ~~~~IgIv~sGG~--aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
+..+|||+...-. .|-...++.|+-++++.. +.++. +......
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~~ 48 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--EIKLE---------------------------------FMAPEKE 48 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------ECCCSST
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCCCC
Confidence 3568999998766 788888899998887654 22221 1101001
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++|++++.+.+.+... ..+ +.+.+.+ ++||.+ |.+.+....-.++++|-
T Consensus 49 -~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 113 (289)
T 3brs_A 49 -EDYLVQNELIEEAIKRKPDVILLAAADYEKTY-DAA-KEIKDAG--IKLIVI----DSGMKQDIADITVATDN 113 (289)
T ss_dssp -TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-HHH-TTTGGGT--CEEEEE----SSCCSSCCCSEEEECCH
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CcEEEE----CCCCCCCcceEEEeeCh
Confidence 13344556778888899999999987654211 112 2233334 788765 44444321114677664
No 76
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=50.30 E-value=25 Score=33.75 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCE-EEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST-LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~-v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
.+..+||+++..-.-|-...++.|+-++++.. |.+ +.- ..+.
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~~-- 50 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--GYTALIS---------------------------------FSTN-- 50 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECSS--
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--CCCEEEE---------------------------------EeCC--
Confidence 45679999998888888889999998888643 343 221 1111
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC-CCCCCCCCCCCchh
Q 007819 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDT 236 (588)
Q Consensus 163 ~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~S~GFdT 236 (588)
.+.+...+.++.+...++||+|+.+ .. + +.+. ..+++||. +|++ +....+ ++++|-
T Consensus 51 -~~~~~~~~~~~~l~~~~vdgiIi~~--~~------~-~~~~--~~~iPvV~----~~~~~~~~~~~--~V~~D~ 107 (277)
T 3hs3_A 51 -SDVKKYQNAIINFENNNVDGIITSA--FT------I-PPNF--HLNTPLVM----YDSANINDDIV--RIVSNN 107 (277)
T ss_dssp -CCHHHHHHHHHHHHHTTCSEEEEEC--CC------C-CTTC--CCSSCEEE----ESCCCCCSSSE--EEEECH
T ss_pred -CChHHHHHHHHHHHhCCCCEEEEcc--hH------H-HHHH--hCCCCEEE----EcccccCCCCE--EEEECh
Confidence 1334456678889999999999998 11 1 1222 22467774 5676 666554 777774
No 77
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=50.23 E-value=60 Score=31.03 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=52.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
++||+|++||.+. ....+++++....-+.+|.++.- ++ .+..+..+...=|-...--...++.+
T Consensus 3 m~ki~vl~sG~g~-----~~~~~l~~l~~~~l~~~I~~Vit-------~~----~~~~v~~~A~~~gIp~~~~~~~~~~~ 66 (212)
T 3av3_A 3 MKRLAVFASGSGT-----NFQAIVDAAKRGDLPARVALLVC-------DR----PGAKVIERAARENVPAFVFSPKDYPS 66 (212)
T ss_dssp CEEEEEECCSSCH-----HHHHHHHHHHTTCCCEEEEEEEE-------SS----TTCHHHHHHHHTTCCEEECCGGGSSS
T ss_pred CcEEEEEEECCcH-----HHHHHHHHHHhCCCCCeEEEEEe-------CC----CCcHHHHHHHHcCCCEEEeCcccccc
Confidence 4799999999854 24445555543222456665542 11 00112222222233333222333445
Q ss_pred hHHHH-HHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 166 TEQVN-AALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 166 ~e~~~-~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
.+.++ .+.+.+++++.|.+|+.| .+-.-....|..
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~~ 102 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALAG-YMRLIGPTLLSA 102 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEch-hhhhCCHHHHhh
Confidence 55554 578899999999777664 555444455543
No 78
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.10 E-value=1.1e+02 Score=30.07 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=63.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-..|-...++.|+-++++.. +.++. +..+.
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 97 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW--- 97 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34568999998777788888888998887642 22221 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++||+++.+.+.+.... +.+.+. .+++||.+ |.+........++++|-
T Consensus 98 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~D~ 161 (340)
T 1qpz_A 98 NNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNA 161 (340)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHH----HHHHTT-TTSCEEEE----EESSCCCSSSEEEECCH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhh-CCCCEEEE----ecccCCCCCCCEEEECH
Confidence 133445567888888999999999877653222 223221 24777765 44333222113677663
No 79
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=50.09 E-value=51 Score=31.92 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=55.4
Q ss_pred CCEEEEEcCchhhhhcC---------CeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEec
Q 007819 118 KSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIG 188 (588)
Q Consensus 118 ~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIG 188 (588)
...++|.=+|..-|++. ++=.++++..+.|...|-. ++-....| +.-+++++++.+.+++.+-++++|
T Consensus 24 ~~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~~-i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~G 100 (223)
T 3k94_A 24 DVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFPD-LDVWPAEK--DKTDMEIALDWAVEQTARCIRLFG 100 (223)
T ss_dssp TEEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCTT-CCEECCBT--TBCHHHHHHHHHHTTCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCe-EEECCCcC--CCCHHHHHHHHHHHcCCCEEEEEc
Confidence 45788888888877663 3335667777777776532 44322222 345789999999999999999999
Q ss_pred Cccc-----HHHHHHHHH
Q 007819 189 GVTS-----NTDAAYLAE 201 (588)
Q Consensus 189 GddS-----~~~A~~Lae 201 (588)
+-|. +.+...|..
T Consensus 101 a~GGR~DH~lani~lL~~ 118 (223)
T 3k94_A 101 ATGGRLDHLFGNVELLLK 118 (223)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 9874 444444443
No 80
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=49.95 E-value=13 Score=38.74 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
+.+.++++.+.+++ +.|.+|-|||--.++.|..+|- + + .+++|.||-|
T Consensus 80 ~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~-~--~--~~p~i~IPTT 127 (376)
T 1kq3_A 80 SDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAY-K--L--KKPVVIVPTI 127 (376)
T ss_dssp BHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHH-H--T--TCCEEEEESS
T ss_pred CHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHH-h--c--CCCEEEecCc
Confidence 44678888888888 9999999999888888888873 2 3 4899999988
No 81
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=49.91 E-value=14 Score=37.15 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
..+++.+.+ +.|.+|++|||||...+.. .+...+.++++..||.==-||+.
T Consensus 54 ~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 54 TKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 334444433 8899999999999876432 23333356899999987777776
No 82
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=48.35 E-value=64 Score=30.88 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=51.0
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEc---CchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL---GGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~---~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
+||+|+.||.-. .+..++++.+....+.+|.++. ....|+ .+...=|-...--...++
T Consensus 1 ~riaVl~SG~Gs-----~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~--------------~~A~~~gIp~~~~~~~~~ 61 (209)
T 1meo_A 1 ARVAVLISGTGS-----NLQALIDSTREPNSSAQIDIVISNKAAVAGL--------------DKAERAGIPTRVINHKLY 61 (209)
T ss_dssp CEEEEEESSSCT-----THHHHHHHHHSTTCSCEEEEEEESSTTCHHH--------------HHHHHTTCCEEECCGGGS
T ss_pred CeEEEEEECCch-----HHHHHHHHHhcCCCCcEEEEEEeCCCChHHH--------------HHHHHcCCCEEEECcccc
Confidence 489999999853 3555666554333346777765 233332 111122322221122223
Q ss_pred CChHHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHHH
Q 007819 164 RTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (588)
Q Consensus 164 ~~~e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~La 200 (588)
.+.+.+ +.+.+.+++++.|.+|+.| .+-.-....|.
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~ 98 (209)
T 1meo_A 62 KNRVEFDSAIDLVLEEFSIDIVCLAG-FMRILSGPFVQ 98 (209)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEES-CCSCCCHHHHH
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEcc-hhhhCCHHHHh
Confidence 454554 4578899999999777776 44443344443
No 83
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=48.17 E-value=1.1e+02 Score=29.18 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=62.2
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-..|-...++.|+-++++.. +.++. +....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~--- 47 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--GYRIL---------------------------------LCNTE--- 47 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34568999998777788888888888877642 22221 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++|++++.+.+.+.. .+ +.+. . +++||.+ |.+.....+ .++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~-~~V~~D~ 108 (285)
T 3c3k_A 48 SDLARSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTV-SSVSIDD 108 (285)
T ss_dssp TCHHHHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 1234445567888889999999998765432 22 2333 3 4788765 444433221 4677764
No 84
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=48.01 E-value=15 Score=39.42 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
+.+.++++.+.+++ +.|.+|-|||--.++.|..+|- + + .+++|.||-|
T Consensus 131 ~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~-~--~--giP~I~IPTT 178 (450)
T 1ta9_A 131 SLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAH-S--M--NLPSIICPTT 178 (450)
T ss_dssp CHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHH-H--T--TCCEEEEESS
T ss_pred CHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHH-h--c--CCCEEEEeCC
Confidence 44678888888888 9999999999988888888883 3 3 4899999988
No 85
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=47.92 E-value=20 Score=37.19 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCC---cEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~I---d~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+.++++.+.+.+.++ |.+|-+||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-rg--ip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMF-RG--IALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHBT-TC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHhc-CC--CCEEEECCch
Confidence 56788999999999995 99999999888877777765332 34 8999999885
No 86
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=46.91 E-value=68 Score=30.69 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=59.5
Q ss_pred CeEEEEEecC-C---CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccC
Q 007819 86 AIRVGIVFCG-R---QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 86 ~~~IgIv~sG-G---~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
..+||+++.. - ..|-...++.|+-++++.. +.++. +..+..
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~ 48 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--NYFVL---------------------------------PFPFSE 48 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--TCEEE---------------------------------ECCCCS
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCCC
Confidence 4689999876 4 6788888999998887643 22221 101111
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 162 k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.. +.....++.+...++|++|+.+.+.+.. ..+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 ~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 109 (287)
T 3bbl_A 49 DR---SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF----GRSNPDWDF-AWVDIDG 109 (287)
T ss_dssp ST---TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE----SCCSTTCCC-CEEEECH
T ss_pred ch---HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE----CCcCCCCCC-CEEEecc
Confidence 11 1123456777889999999998765422 223344444 678765 444433222 4677663
No 87
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=46.53 E-value=62 Score=31.10 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++ .-.-|-...++.|+-+.++.. +.++.-+. ....
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~~~- 52 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRR--GYDVMLSA---------------------------------VAPS- 52 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------EBTT-
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CCCC-
Confidence 4467899999 777788888999998888653 33332111 1111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+ ..+.++.+...++||+|+.+.+.+.. .+ +.+.+ +++||. +|++.....+ .++++|-
T Consensus 53 --~~-~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~~~~---~iPvV~----i~~~~~~~~~-~~V~~D~ 110 (289)
T 3k9c_A 53 --RA-EKVAVQALMRERCEAAILLGTRFDTD---EL-GALAD---RVPALV----VARASGLPGV-GAVRGDD 110 (289)
T ss_dssp --BC-HHHHHHHHTTTTEEEEEEETCCCCHH---HH-HHHHT---TSCEEE----ESSCCSSTTS-EEEEECH
T ss_pred --HH-HHHHHHHHHhCCCCEEEEECCCCCHH---HH-HHHHc---CCCEEE----EcCCCCCCCC-CEEEeCh
Confidence 11 34467778889999999999877642 22 23332 478875 4666554432 5677764
No 88
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=46.10 E-value=1.4e+02 Score=28.25 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=61.4
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
+.+|||++..-..|-...++.|+-++++.. +.++. +..+. .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~ 43 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQL--GYEAT---------------------------------IFDSQ---ND 43 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---TC
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CC
Confidence 358999998777788888999998887643 22211 11111 12
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCC-CCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN-VGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S-~GFdT 236 (588)
.+...+.++.+...++|++++.+.+.+... ..+ +.+.+.+ ++||.+ |++.+......+ +++|.
T Consensus 44 ~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~~V~~D~ 107 (290)
T 2fn9_A 44 TAKESAHFDAIIAAGYDAIIFNPTDADGSI-ANV-KRAKEAG--IPVFCV----DRGINARGLAVAQIYSDN 107 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSCSSSSSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCChHHHH-HHH-HHHHHCC--CeEEEE----ecCCCCCCceEEEEeCCH
Confidence 344455677788889999999987654211 122 3344444 677765 444433221134 77764
No 89
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=45.18 E-value=1.3e+02 Score=28.36 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHh
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKL 114 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~ 114 (588)
.+..+|||++..-..|-...++.|+-+.++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~ 36 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL 36 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH
Confidence 3457899999887888899999999988864
No 90
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=44.35 E-value=88 Score=30.19 Aligned_cols=104 Identities=14% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCCeEEEEEecC-----CCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccc
Q 007819 84 HPAIRVGIVFCG-----RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 158 (588)
Q Consensus 84 ~~~~~IgIv~sG-----G~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS 158 (588)
.+..+|||++.. -.-|-...++.|+-++++.. +.++.- ..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~ 64 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--GYSTRM---------------------------------TV 64 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--TCEEEE---------------------------------CC
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--CCEEEE---------------------------------Ee
Confidence 456789999988 56677788888888877653 333321 00
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 159 ~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.. .+.+...+.++.+...++||+|+.+.+.+.. ..+.+.+.| ++||.+ |++..... -.++++|-
T Consensus 65 ~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~-~~~V~~D~ 128 (305)
T 3huu_A 65 SE---NSGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV----GKSLNYEN-IIHIDNDN 128 (305)
T ss_dssp CS---SHHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE----SCCCSSTT-CCEEECCH
T ss_pred CC---CChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE----CCCCcccC-CcEEEeCH
Confidence 10 1234456678889999999999998876532 223344445 677754 55553221 15666663
No 91
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=43.50 E-value=1.1e+02 Score=29.42 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=53.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
++||+|+.||+ |-| +..++++.+.-.-..+|.++.- ++- ...+..+-..=|-...--...++.+
T Consensus 2 m~riavl~Sg~---Gsn--l~ali~~~~~~~l~~eI~~Vis-------n~~----~a~v~~~A~~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFASGS---GTN--AEAIIQSQKAGQLPCEVALLIT-------DKP----GAKVVERVKVHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECCTT---CHH--HHHHHHHHHTTCCSSEEEEEEE-------SCS----SSHHHHHHHTTTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCC---chH--HHHHHHHHHcCCCCcEEEEEEE-------CCC----CcHHHHHHHHcCCCEEEeChhhcCc
Confidence 47999999996 433 6777776653322346655552 110 0112222222232222212223444
Q ss_pred hHHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 166 TEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 166 ~e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
.+.+ +.+++.+++++.|.+|+.| .+-.-....|..
T Consensus 66 r~~~d~~~~~~l~~~~~Dliv~ag-y~~Il~~~~l~~ 101 (211)
T 3p9x_A 66 KEAYEIEVVQQLKEKQIDFVVLAG-YMRLVGPTLLGA 101 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEeC-chhhcCHHHHhh
Confidence 4544 4578999999999777775 555545555544
No 92
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=41.92 E-value=1e+02 Score=29.74 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-.-|-...++.|+-+.++.. +..++- ..+..
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~~-- 55 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--STDVLL---------------------------------GQIDA-- 55 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--TCCEEE---------------------------------EECCS--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCCC--
Confidence 45578999999888888999999999888653 332221 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+...+.++.+...++||+|+.+.+.+.. ..+ +.+.+ +++||.+ |++... .+ .++++|-
T Consensus 56 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~-~~l~~---~iPvV~i----~~~~~~-~~-~~V~~D~ 115 (303)
T 3kke_A 56 -PPRGTQQLSRLVSEGRVDGVLLQRREDFDD--DML-AAVLE---GVPAVTI----NSRVPG-RV-GSVILDD 115 (303)
T ss_dssp -TTHHHHHHHHHHHSCSSSEEEECCCTTCCH--HHH-HHHHT---TSCEEEE----SCCCTT-CC-CEEEECH
T ss_pred -ChHHHHHHHHHHHhCCCcEEEEecCCCCcH--HHH-HHHhC---CCCEEEE----CCcCCC-CC-CEEEECc
Confidence 234456678889999999999999877643 123 33333 4788765 455443 21 5677663
No 93
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=41.92 E-value=85 Score=28.48 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCeEEEEEecCCCcccHH-HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 85 PAIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~N-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
...+|.+.+.||+.--+- ++++.+++ ..|++|+- . |. ..+.+.+-..-..-+.+++|-|-...
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~-----~~G~eVi~-l-G~---------~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALR-----DAGFEVVY-T-GL---------RQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHH-----HTTCEEEC-C-CS---------BCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHH-----HCCCEEEE-C-CC---------CCCHHHHHHHHHhcCCCEEEEEeech
Confidence 456888999899774443 45555543 23777761 1 11 24655544444444556777666544
Q ss_pred CChHHHHHHHHHHHHcCC-cEEEEecCcccHH
Q 007819 164 RTTEQVNAALTACKNLNL-DGLVIIGGVTSNT 194 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~I-d~LviIGGddS~~ 194 (588)
.+.+.+.+.++.|++.+. +..|++||.-...
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~ 112 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTIPIP 112 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHH
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchh
Confidence 466788999999999887 6789999975543
No 94
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=41.80 E-value=90 Score=29.85 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++.....|-...++.|+-+.++.. +.++. +....
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~--- 59 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--GYQLL---------------------------------IACSE--- 59 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEcCC---
Confidence 44578999998877888888899998887643 22221 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++|++++.+.+.+.. . +.+.+.+. +++||.+ |.+.....+ .++++|-
T Consensus 60 ~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~-~~~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~d~ 122 (293)
T 2iks_A 60 DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEH--P-FYQRWAND--PFPIVAL----DRALDREHF-TSVVGAD 122 (293)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSSCTTC--H-HHHTTTTS--SSCEEEE----ESCCCTTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcH--H-HHHHHHhC--CCCEEEE----CCccCcCCC-CEEEecC
Confidence 1234445677888889999999998765431 1 22333333 4777765 444433222 4677764
No 95
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=41.75 E-value=2.3e+02 Score=26.62 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=61.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
++|||+...-..|-...++.|+-+.++.+ +.+++ +..+. .+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 43 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV---------------------------------VLDSQ---NNP 43 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TCH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHc--CcEEE---------------------------------EeCCC---CCH
Confidence 57999988777788888888888877643 22221 11111 122
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+...+.++.+...++||+++.+.+..... ..+ +.+.+.| ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~ 105 (271)
T 2dri_A 44 AKELANVQDLTVRGTKILLINPTDSDAVG-NAV-KMANQAN--IPVITL----DRQATKGEVVSHIASDN 105 (271)
T ss_dssp HHHHHHHHHHTTTTEEEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCC--CcEEEe----cCCCCCCceeEEEecCh
Confidence 33455678888899999999876543211 112 3334444 677754 55554332224677764
No 96
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=40.99 E-value=1.7e+02 Score=28.68 Aligned_cols=94 Identities=26% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..||||++.- +-|.++++-.|+.++++.. | ..+++-+++. ++|..|
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~-----------G---~~~g~nv~~~------~~~a~g----------- 53 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKAK-----------G---YEEGKNLEFD------YKTAQG----------- 53 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHHT-----------T---CCBTTTEEEE------EEECTT-----------
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHhh-----------C---cccCCcEEEE------EEeCCC-----------
Confidence 457899999985 6799999999999999753 1 1133323331 223222
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
+......+++.+...+.|.+|.||.. .|..++.. ..+++||.+-.|
T Consensus 54 -d~~~~~~~~~~l~~~~~DlIiai~t~----aa~a~~~~----~~~iPVVf~~v~ 99 (302)
T 3lkv_A 54 -NPAIAVQIARQFVGENPDVLVGIATP----TAQALVSA----TKTIPIVFTAVT 99 (302)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEESHH----HHHHHHHH----CSSSCEEEEEES
T ss_pred -CHHHHHHHHHHHHhcCCcEEEEcCCH----HHHHHHhh----cCCCCeEEEecC
Confidence 34567778889999999988877632 12222222 235788776544
No 97
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=39.76 E-value=2.2e+02 Score=27.85 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEE
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIg 214 (588)
+++..+.+.+.+++.++|+++. +-+.....++.+++.+.+.| ++++|
T Consensus 57 ~~~~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g--~~~~~ 103 (331)
T 2pn1_A 57 EVEYIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG--VTVIV 103 (331)
T ss_dssp STTHHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT--CEECC
T ss_pred ChhHHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC--cEEec
Confidence 3456788899999999998765 43444445566777776555 44443
No 98
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=38.97 E-value=1.4e+02 Score=28.56 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=53.6
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||+|+.||.-+ .+..++++++....+.+|.++.--.. ......+...=|-...--.+.++.+.
T Consensus 1 ~ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~r 64 (212)
T 1jkx_A 1 MNIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNKA-----------DAFGLERARQAGIATHTLIASAFDSR 64 (212)
T ss_dssp CEEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESCT-----------TCHHHHHHHHTTCEEEECCGGGCSSH
T ss_pred CEEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCCC-----------chHHHHHHHHcCCcEEEeCcccccch
Confidence 489999999753 36677776654433457766652110 00112222222333333233334444
Q ss_pred HHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 167 EQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 167 e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
+.+ +.+.+.+++++.|.+|+. |.+-.-....|..
T Consensus 65 ~~~~~~~~~~l~~~~~Dliv~a-gy~~il~~~~l~~ 99 (212)
T 1jkx_A 65 EAYDRELIHEIDMYAPDVVVLA-GFMRILSPAFVSH 99 (212)
T ss_dssp HHHHHHHHHHHGGGCCSEEEES-SCCSCCCHHHHHH
T ss_pred hhccHHHHHHHHhcCCCEEEEe-ChhhhCCHHHHhh
Confidence 444 457889999999977666 4555444455543
No 99
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=38.69 E-value=1.7e+02 Score=28.66 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=56.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-.-|-...++.|+-+.+... |..++ +..+.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 101 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--GYQML---------------------------------IGNSH--- 101 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---
Confidence 34578999998888888889999998888643 33332 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.+.+...+.++.+...++||+|+.+-+.+... .+.+.+.+ ++||.+
T Consensus 102 ~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 102 YDAGQELQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHA--LPVVYM 147 (339)
T ss_dssp TCHHHHHHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTT--CCEEEE
T ss_pred CChHHHHHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCC--CCEEEE
Confidence 12344566788888999999999997665422 23333444 678766
No 100
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=38.41 E-value=23 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Q 007819 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (588)
Q Consensus 192 S~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 224 (588)
.......|.+.+.+.+...-|||.|++.||...
T Consensus 36 ~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 36 LEEDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 345566777777777777888899988887653
No 101
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=38.35 E-value=2.2e+02 Score=27.75 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-..|-...++.|+-+.++.. +..+. +..+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~--- 102 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY--KYNMI---------------------------------LANSD--- 102 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEECC---
Confidence 34578999998777788888888888887642 22221 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++||+++.+.+.+... + +.+.+.+ ++||.+ |.+.+...+ .++++|-
T Consensus 103 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 164 (332)
T 2o20_A 103 NDVEKEEKVLETFLSKQVDGIVYMGSSLDEKI---R-TSLKNSR--TPVVLV----GTIDGDKEI-PSVNIDY 164 (332)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECSSCCCHHH---H-HHHHHHC--CCEEEE----SCCCTTSCS-CEEECCH
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHH---H-HHHHhCC--CCEEEE----ccccCCCCC-CEEEeCh
Confidence 12344456778888899999999987654322 2 2233344 677765 443332221 4677663
No 102
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=37.45 E-value=1.6e+02 Score=28.65 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=59.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+|||++.. ..|-...++.|+-++++.. .+.++. +..+. .
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~-~g~~l~---------------------------------i~~~~---~ 46 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFY-NGVSVE---------------------------------IRSAG---D 46 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTTS-SSCEEE---------------------------------EEECT---T
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHHc-CCcEEE---------------------------------EeCCC---C
Confidence 45689999877 6666677778887766421 022221 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+.....++.+...++|++|+.+.+.+.. ....+.+.+.+ ++||.+ |+++.....-.++++|-
T Consensus 47 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 110 (325)
T 2x7x_A 47 DNSKQAEDVHYFMDEGVDLLIISANEAAPM--TPIVEEAYQKG--IPVILV----DRKILSDKYTAYIGADN 110 (325)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSSHHHH--HHHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CeEEEe----CCCCCCcceeEEEecCH
Confidence 234445667788889999999998764321 12224444444 678765 44444321114677664
No 103
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=37.07 E-value=54 Score=32.70 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-.-|-...++.|+-+.+... |..++ +..+.
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 109 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--GLQLL---------------------------------LGYTA--- 109 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---
Confidence 34568999998877787888888888877643 33332 11111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+
T Consensus 110 ~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 110 YSPEREEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRAS--IPIVEI 155 (355)
T ss_dssp TCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHCC--SCEEEE
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 133445667888889999999999887764322 3344444 788876
No 104
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.98 E-value=74 Score=31.74 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCc-----EEEEecCc--ccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 167 EQVNAALTACKNLNLD-----GLVIIGGV--TSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id-----~LviIGGd--dS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
..++.+.+.+++..-. -++++||+ ++-..+..|++.+++.|+.+.|||+=
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 4577778888754332 35666765 45667888999999999888888765
No 105
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=36.31 E-value=1.8e+02 Score=28.43 Aligned_cols=104 Identities=15% Similarity=0.237 Sum_probs=61.1
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-..|-...++.|+-++++.. +.++. +..+.
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 99 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--KYNII---------------------------------LSNSD--- 99 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECC---
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34578999998777788888999998887643 22221 11110
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++||+++.+.+.+.. .+ +.+.+. +++||.+ |.+.+...+ .++++|-
T Consensus 100 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~~~--~iPvV~~----~~~~~~~~~-~~V~~D~ 161 (332)
T 2hsg_A 100 QNQDKELHLLNNMLGKQVDGIIFMSGNVTEE---HV-EELKKS--PVPVVLA----ASIESTNQI-PSVTIDY 161 (332)
T ss_dssp SHHHHHHHHHHHTSCCSSCCEEECCSSCCHH---HH-HHHTTS--SSCEEEE----SCCCSCTTS-CEEEECH
T ss_pred CChHHHHHHHHHHHhCCCcEEEEecCCCCHH---HH-HHHHhC--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 1223345567777788999999998776532 22 333333 4778765 444433221 4677764
No 106
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=35.89 E-value=77 Score=32.66 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHc---CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l---~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.+.. +.+.+||-.=
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTG 122 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLVG 122 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEEC
Confidence 667777777777764 7999999999999976554444443 4456776653
No 107
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.31 E-value=57 Score=32.34 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=59.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-.-|-...++.|+-++++.. |..+.-+ ...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~--- 103 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--GYQMLVA---------------------------------EAN--- 103 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEE---------------------------------ECC---
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------CCC---
Confidence 44678999999888888889999999888754 3333211 111
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
. .+.....++.+...++||+|+.+. + +.+.+. +++||.+ |++.....+ .++++|-
T Consensus 104 ~-~~~~~~~~~~l~~~~vdGiIi~~~---------~-~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~D~ 158 (333)
T 3jvd_A 104 S-VQAQDVVMESLISIQAAGIIHVPV---------V-GSIAPE--GIPMVQL----TRGELGPGF-PRVLCDD 158 (333)
T ss_dssp S-HHHHHHHHHHHHHHTCSEEEECCC---------T-TCCC-C--CSCEEEE----CC----CCS-CEEEECH
T ss_pred C-hHHHHHHHHHHHhCCCCEEEEcch---------H-HHHhhC--CCCEEEE----CccCCCCCC-CEEEECh
Confidence 1 244566788888999999999986 1 222223 4677754 555543322 5677764
No 108
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=33.91 E-value=2.8e+02 Score=26.20 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=55.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCC-EEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~-~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
.+|||++..-..|-...++.|+-++++.. +. ++. +..+. .+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~~---~~ 44 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--PDVQLL---------------------------------MNDSQ---ND 44 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--TTEEEE---------------------------------EEECT---TC
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--CCeEEE---------------------------------EecCC---CC
Confidence 58999998877788888999998887643 21 111 11111 12
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.+.....++.+...++|++|+.+.+.+... ...+.+.+.| ++||.+-
T Consensus 45 ~~~~~~~~~~~~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~~ 91 (309)
T 2fvy_A 45 QSKQNDQIDVLLAKGVKALAINLVDPAAAG--TVIEKARGQN--VPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSGGGHH--HHHHHHHTTT--CCEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcchhH--HHHHHHHHCC--CcEEEec
Confidence 344456778888899999999987765221 1223344444 7887653
No 109
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=33.84 E-value=69 Score=30.82 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=58.5
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCe---------EecCHhhHhchhhcCCcccccccc
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT---------LEVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~---------~eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
.++++||+.|-.- .....++|.=+|..=|++..+ =-++++.++.|...| ..++-...
T Consensus 4 ~~I~~gG~~~~~~-------------~~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~-~~i~~~~~ 69 (218)
T 3ihk_A 4 VALFSGGDLTYFT-------------RDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKA-KKLVMAPA 69 (218)
T ss_dssp EEEECSSCCSCCC-------------CCCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTC-SSEEECCS
T ss_pred EEEEECCCCccCc-------------ccCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcC-CeEEECCC
Confidence 5677888876311 113578899999888877543 245666777777664 32433222
Q ss_pred CCCCChHHHHHHHHHHHHc-CCcEEEEecCccc
Q 007819 161 DQIRTTEQVNAALTACKNL-NLDGLVIIGGVTS 192 (588)
Q Consensus 161 ~k~~~~e~~~~i~~~l~~l-~Id~LviIGGddS 192 (588)
.| +.-+++++++.+.++ +.+-++++|+-|.
T Consensus 70 eK--D~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 70 EK--NDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp SC--SSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CC--CCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 22 345789999988887 7999999999886
No 110
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=33.76 E-value=2.1e+02 Score=27.36 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=62.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
+.+||+++.....|-...++.|+-+.++.. +.++. +..+. .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~l~---------------------------------~~~~~---~~ 43 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK---------------------------------IADGQ---QK 43 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CC
Confidence 468999998877888888889988887654 22221 11111 12
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCC---CCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF---VETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~---ie~S~GFdT 236 (588)
.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++....+ .-.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~~~~V~~D~ 109 (306)
T 2vk2_A 44 QENQIKAVRSFVAQGVDAIFIAPVVATGWE-PVL-KEAKDAE--IPVFLL----DRSIDVKDKSLYMTTVTADN 109 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSSSSCH-HHH-HHHHHTT--CCEEEE----SSCCCCSCGGGSSEEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHCC--CCEEEe----cCCCCCCCccceEEEEecCH
Confidence 344455678888889999999987654211 112 2333344 678765 44443221 014666663
No 111
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=33.32 E-value=65 Score=30.92 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.|++-++.+++..++++|+.+|+---.|. +|.++.+.+ .| +++|.|.
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~--TA~k~~e~~--~~--i~lVvVT 73 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGD--TAMKALEMA--EG--LEVVVVT 73 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHHHC--TT--CEEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCh--HHHHHHHHh--cC--CeEEEEe
Confidence 46778899999999999999999877665 788888876 34 7899887
No 112
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=32.48 E-value=76 Score=32.74 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHH----cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKN----LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~----l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.+++ -+.|++||.=|-|||...+.+-.++. +.+.+||-.=
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTG 124 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVVG 124 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEeC
Confidence 67788888877777 47999999999999976554444443 4566777663
No 113
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=32.09 E-value=1.5e+02 Score=30.57 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=63.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCC-CCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcc--ccccccCCC
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNP-KSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD--MLGRTKDQI 163 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~-~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~--~lgS~R~k~ 163 (588)
+||.+|+ |-.|+.--. +.+++++++. + +.++.-+..|-. + ++..+.++.+...+-.+ +.+.+-...
T Consensus 28 ~kI~~v~--Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~~tG~h------~-~m~~~~~~~~~i~~~~~l~v~~~~~~~~ 96 (403)
T 3ot5_A 28 IKVMSIF--GTRPEAIKM-APLVLALEKE-PETFESTVVITAQH------R-EMLDQVLEIFDIKPDIDLDIMKKGQTLA 96 (403)
T ss_dssp EEEEEEE--CSHHHHHHH-HHHHHHHHTC-TTTEEEEEEECC------------CHHHHHHTTCCCSEECCCCC-CCCHH
T ss_pred ceEEEEE--ecChhHHHH-HHHHHHHHhC-CCCCcEEEEEecCc------H-HHHHHHHHhcCCCCCcccccCCCCCCHH
Confidence 4787777 677887766 8888888754 4 567665666643 1 23333333332222111 111110000
Q ss_pred -CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 164 -RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 164 -~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.+-.-+.++.+.+++.+-|.++++|+-.+.-.++..|.. . +|+|+++-
T Consensus 97 ~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~---~--~IPv~h~~ 145 (403)
T 3ot5_A 97 EITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFY---Q--QKMLGHVE 145 (403)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHH---T--TCEEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHH---h--CCCEEEEE
Confidence 023456777888999999999999876555444433332 3 47888764
No 114
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.07 E-value=45 Score=32.24 Aligned_cols=104 Identities=12% Similarity=0.189 Sum_probs=61.7
Q ss_pred CCCeEEEEEecCC-----CcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccc
Q 007819 84 HPAIRVGIVFCGR-----QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 158 (588)
Q Consensus 84 ~~~~~IgIv~sGG-----~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS 158 (588)
.+..+|||++... .-|-...++.|+-++++.. +..++ +..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~ 49 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH--GYGTQ---------------------------------TTV 49 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT--TCEEE---------------------------------ECC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEc
Confidence 3457899999543 3566677888888777532 33332 101
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCC-CCCCCCch
Q 007819 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF-VETNVGFD 235 (588)
Q Consensus 159 ~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~-ie~S~GFd 235 (588)
+. .+.+...++++.+...++||+|+.+.+.+.. +.+.+.+.+ ++||.+ |+++.... --.++++|
T Consensus 50 ~~---~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~~~V~~D 114 (295)
T 3hcw_A 50 SN---NMNDLMDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIVI----GKPTSDIDHQFTHIDND 114 (295)
T ss_dssp CC---SHHHHHHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEEE----SCCCSSGGGGSCEEEEC
T ss_pred CC---CChHHHHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEEE----CCCCccccCCceEEecC
Confidence 10 1234456678889999999999998775432 223344445 677754 66655431 11466665
No 115
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=31.80 E-value=1.5e+02 Score=28.11 Aligned_cols=104 Identities=9% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+||+++..-..|-...++.|+-++++.. +.++.-+. .+..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~--------------------------------~~~~-- 49 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--GYNLIIVY--------------------------------SGSA-- 49 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--TCEEEEEC--------------------------------------
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEEEEe--------------------------------CCCC--
Confidence 34578999998888888889999999887642 33221110 0000
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+.+.....++.+...++|++|+.+.+.+. ..+ +.+.+. +++||.+- .+.... -.++++|-
T Consensus 50 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~-~~l~~~--~iPvV~~~----~~~~~~--~~~V~~D~ 109 (290)
T 3clk_A 50 -DPEEQKHALLTAIERPVMGILLLSIALTD---DNL-QLLQSS--DVPYCFLS----MGFDDD--RPFISSDD 109 (290)
T ss_dssp -------CHHHHHHSSCCSEEEEESCC-------CH-HHHHCC----CEEEES----CC--CC--SCEEECCH
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEecccCCH---HHH-HHHHhC--CCCEEEEc----CCCCCC--CCEEEeCh
Confidence 11122345667778899999999877542 122 334433 47887764 333322 14677764
No 116
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.44 E-value=2.2e+02 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHc-CCcEEEEecCcccHHHHHHHHHHHHhcCC---CceEEEe
Q 007819 166 TEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKC---PTKVVGV 215 (588)
Q Consensus 166 ~e~~~~i~~~l~~l-~Id~LviIGGddS~~~A~~Lae~~~~~g~---~i~VIgV 215 (588)
++.++.+.+.++++ ++++++|++.+|.+... ..+.+++.|. ++.|+|.
T Consensus 180 ~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g--~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 180 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG--GVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEECSSHHHHHH--HHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCcHHHHH--HHHHHHHcCCCCCceEEEEe
Confidence 34455556666654 79998888888875543 3455667776 4666664
No 117
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=30.99 E-value=41 Score=34.17 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccc--cccCCCCChHHHHHHHHHHHHcCCc
Q 007819 105 VWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLD 182 (588)
Q Consensus 105 I~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lg--S~R~k~~~~e~~~~i~~~l~~l~Id 182 (588)
++..++.++...+. -+-+-+|..|-... -|.+....++.. |...+- ++|+ .+.+.++..+..++.+||+
T Consensus 31 l~~~~~~L~~~~pd--~vsVT~~~~g~~r~----~t~~~a~~i~~~-g~~~i~Hltc~~--~~~~~l~~~L~~~~~~GI~ 101 (310)
T 3apt_A 31 LFRTLEELKAFRPA--FVSITYGAMGSTRE----RSVAWAQRIQSL-GLNPLAHLTVAG--QSRKEVAEVLHRFVESGVE 101 (310)
T ss_dssp HHHHHHHHGGGCCS--EEEECCCSTTCSHH----HHHHHHHHHHHT-TCCBCEEEECTT--SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCC--EEEEecCCCCCcch----hHHHHHHHHHHh-CCCeEEEeecCC--CCHHHHHHHHHHHHHCCCC
Confidence 34444556544333 34455666553221 133344445533 332222 3555 4778999999999999999
Q ss_pred EEEEecCccc------------HHHHHHHHHHHHhc-C--CCceEEEee
Q 007819 183 GLVIIGGVTS------------NTDAAYLAETFAEA-K--CPTKVVGVP 216 (588)
Q Consensus 183 ~LviIGGddS------------~~~A~~Lae~~~~~-g--~~i~VIgVP 216 (588)
.++++.||-. ...|..|-+++++. | ..+-|.+-|
T Consensus 102 niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 102 NLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp EEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 9999999932 34688888887776 5 344555555
No 118
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=30.78 E-value=2.3e+02 Score=28.67 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=50.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
..++||+|+.||. | + -+..++++.+.-.-..+|-++.- ++ .++..+...=|-...--...+.
T Consensus 103 ~~~~ri~vl~Sg~---g-~-nl~~ll~~~~~g~l~~~I~~Vis-------n~------~~~~~~A~~~gIp~~~~~~~~~ 164 (302)
T 3o1l_A 103 AQKKRVVLMASRE---S-H-CLADLLHRWHSDELDCDIACVIS-------NH------QDLRSMVEWHDIPYYHVPVDPK 164 (302)
T ss_dssp TSCCEEEEEECSC---C-H-HHHHHHHHHHTTCSCSEEEEEEE-------SS------STTHHHHHTTTCCEEECCCCSS
T ss_pred CCCcEEEEEEeCC---c-h-hHHHHHHHHHCCCCCcEEEEEEE-------Cc------HHHHHHHHHcCCCEEEcCCCcC
Confidence 3468999999998 2 2 25666665543222346655542 11 0011112222322222111222
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHH
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae 201 (588)
..++.-+++++.+++++.|.+|+.| .+-.-....|..
T Consensus 165 ~r~~~~~~~~~~l~~~~~DliVlag-ym~IL~~~~l~~ 201 (302)
T 3o1l_A 165 DKEPAFAEVSRLVGHHQADVVVLAR-YMQILPPQLCRE 201 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEESS-CCSCCCTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCEEEHhH-hhhhcCHHHHhh
Confidence 2234445688999999999766654 554434444433
No 119
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.43 E-value=2.3e+02 Score=27.27 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+...+.++.+...++|++|+.+.+.+.. ...+ +.+.+.| ++||.+ |++.+....-.++++|-
T Consensus 43 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-~~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~ 105 (313)
T 2h3h_A 43 INAQLQMLESFIAEGVNGIAIAPSDPTAV-IPTI-KKALEMG--IPVVTL----DTDSPDSGRYVYIGTDN 105 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSTTTT-HHHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChHHH-HHHH-HHHHHCC--CeEEEe----CCCCCCcceeEEECcCH
Confidence 34455667778888999999988765421 1122 3333444 788865 55544321125677664
No 120
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.34 E-value=82 Score=27.70 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=52.9
Q ss_pred eEEEEEecCCCcccHH-HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 87 IRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~N-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
.+|.+.+.||+.=-+. ++++.+++ ..|++|+-. | ...+.+.+-..-..-+.++++.|-..-.+
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~-----~~G~~Vi~l-----G------~~~p~e~~v~~a~~~~~d~v~lS~~~~~~ 67 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFT-----NAGFNVVNI-----G------VLSPQELFIKAAIETKADAILVSSLYGQG 67 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHH-----HTTCEEEEE-----E------EEECHHHHHHHHHHHTCSEEEEEECSSTH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHH-----HCCCEEEEC-----C------CCCCHHHHHHHHHhcCCCEEEEEecCcCc
Confidence 4788888888642222 24444443 236777621 1 23455544333333345577766654445
Q ss_pred hHHHHHHHHHHHHcCC-cEEEEecCcc
Q 007819 166 TEQVNAALTACKNLNL-DGLVIIGGVT 191 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~I-d~LviIGGdd 191 (588)
.+.+.+.++.|++.++ +..|++||.-
T Consensus 68 ~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 68 EIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 6678888888888887 6788899864
No 121
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=29.89 E-value=5.1e+02 Score=27.24 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=70.9
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcC---CeEecCHhhHhchhhcCCccccccccCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ---KTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~---~~~eLt~~~v~~~~n~GGs~~lgS~R~k 162 (588)
..+|.||=.|| |++|++..+++. .-.+.+.+.+--=.+.|-.- +-+.|..+.. .| +|.+...
T Consensus 17 ~~~IkVIGVGG---~G~NaVn~m~~~---~~~gvefiaiNTD~qaL~~s~a~~ki~lG~~~t------~G---lGAG~np 81 (396)
T 4dxd_A 17 LATLKVIGVGG---GGNNAVNRMIDH---GMNNVEFIAINTDGQALNLSKAESKIQIGEKLT------RG---LGAGANP 81 (396)
T ss_dssp -CCEEEEEEHH---HHHHHHHHHHHH---CCCSEEEEEEESCHHHHHTCCCSEEEECCHHHH------TT---SCCTTCH
T ss_pred CCeEEEEEECC---cHHHHHHHHHHh---CCCCceEEEEECCHHHHhcCCCccEEEcCcccc------CC---CCCCCCh
Confidence 45676666666 677888888753 12344555554333333211 1122222111 11 1222211
Q ss_pred CC----ChHHHHHHHHHHHHcCCcEEEEe----cCcccHHHHHHHHHHHHhcCCCceEEEe---eec-------------
Q 007819 163 IR----TTEQVNAALTACKNLNLDGLVII----GGVTSNTDAAYLAETFAEAKCPTKVVGV---PVT------------- 218 (588)
Q Consensus 163 ~~----~~e~~~~i~~~l~~l~Id~LviI----GGddS~~~A~~Lae~~~~~g~~i~VIgV---PKT------------- 218 (588)
-. -++..+++.+.++ +-|.+++. ||-||=. |..|++..++.| +..++| |..
T Consensus 82 ~vG~eaaee~~d~Ir~~le--~~D~ffItagmGGGTGSGa-apvIaeiake~g--~LtvsVVt~Pf~~Eg~~r~yNA~lg 156 (396)
T 4dxd_A 82 EIGKKAAEESREQIEDAIQ--GADMVFVTSGMGGGTGTGA-APVVAKIAKEMG--ALTVGVVTRPFSFEGRKRQTQAAAG 156 (396)
T ss_dssp HHHHHHHHHTHHHHHHHHT--TCSEEEEEEETTSSHHHHH-HHHHHHHHHHTT--CEEEEEEEECCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCEEEEEeccCCCccccH-HHHHHHHHHhcC--CceEEEEeCCccccchHHHHHHHHH
Confidence 00 1344566666665 66777665 3444432 335677666666 344444 753
Q ss_pred -------------ccCCCCCCCCCCCC----CchhHHHHHHHHHHHHHHHhh
Q 007819 219 -------------LNGDLKNQFVETNV----GFDTICKVNSQLISNVCTDAL 253 (588)
Q Consensus 219 -------------IDNDL~~~~ie~S~----GFdTA~k~~ae~I~nl~~dA~ 253 (588)
||||--..-+...+ .|..|=+.+++.|..+....+
T Consensus 157 l~~L~e~vD~vIvIdNeaL~~I~~~~l~i~~af~~aN~ll~q~VsgIT~~ir 208 (396)
T 4dxd_A 157 VEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIA 208 (396)
T ss_dssp HHHHHHHSSEEEEEEGGGGGGTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEcCHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 67775433222233 455555566666655544433
No 122
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=29.88 E-value=1.7e+02 Score=27.67 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcc----cHHHHHHHHHHHHhcCCCceEEEee
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVT----SNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGdd----S~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.++.+++.++++|++++=+-+.+. +...+..+.+.+.+.|+.+..++.|
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 69 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLANLGLP 69 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECCEECC
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEEeccc
Confidence 367788889999999987766543 2345677888888888766666655
No 123
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=29.49 E-value=49 Score=30.97 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+..++.++.+++.+|.+.|- +..-.-.++- ....+|||||-.
T Consensus 45 R~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 45 RTPKETVEFVENADNRGCAVFIAAAGL-AAHLAGTIAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp TSHHHHHHHHHHHHHTTEEEEEEEECS-SCCHHHHHHH-----TCSSCEEEEECC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCh-hhhhHHHHHh-----cCCCCEEEeecC
Confidence 377888889999999999965555443 2222233332 346899999943
No 124
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=29.12 E-value=6.2e+02 Score=27.95 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=82.6
Q ss_pred hhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcc-----------c---HHHHHHHHHHHHhcCCCceE
Q 007819 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT-----------S---NTDAAYLAETFAEAKCPTKV 212 (588)
Q Consensus 147 ~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGdd-----------S---~~~A~~Lae~~~~~g~~i~V 212 (588)
|..+ |+ |++.+|..+ +.+.+.+.++.+..+++|.|..==-|| + ......|.+|++++| |.|
T Consensus 149 f~~R-G~-mlD~~R~~~-~~~~ik~~id~ma~~KlN~~h~Hl~DDq~~~~~wr~~Yp~~~~~~i~elv~yA~~rg--I~v 223 (594)
T 2v5c_A 149 VSAR-GI-VEGFYGTPW-THQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENK--VDF 223 (594)
T ss_dssp SSEE-EE-ECCCCSSCC-CHHHHHHHHHHHHHTTCCEEEECCTTCGGGTTTTTSCCCGGGHHHHHHHHHHHHHTT--CEE
T ss_pred CCee-ce-eeeecCCCC-CHHHHHHHHHHHHHhCCcEEEEecccCcccccccCCCCCHHHHHHHHHHHHHHHHCC--cEE
Confidence 3444 55 888888654 788999999999999999988654343 1 236778889999988 566
Q ss_pred EEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcc-c--eEEecccccccCCh-hhHHHHHHHHHHHHHHC
Q 007819 213 VGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE-K--VILGEEVAASKLTL-FDLTKQICDAVQARAEQ 288 (588)
Q Consensus 213 IgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~-k--vlI~Ee~~~~~~tL-~~iv~~i~~~I~~R~~~ 288 (588)
|--= .+.++.+++-+.+-+.|..+...+..-.. .+ + .+-.-|+......- ..+++.+.+.+.+..
T Consensus 224 v~~i--------~Pe~d~~~~~~~~~~~~~~l~~k~~~l~~-~G~~~f~IG~DEi~~~~~~~q~~v~n~~~~~~~~a~-- 292 (594)
T 2v5c_A 224 VFGI--------SPGIDIRFDGDAGEEDFNHLITKAESLYD-MGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAK-- 292 (594)
T ss_dssp EEEE--------CGGGTCCCSTHHHHHHHHHHHHHHHHHHT-TTCCEEEEECSSCSCCCHHHHHHHHHHHHHHTHHHH--
T ss_pred EEec--------CCCccccCCCcchHHHHHHHHHHHHHHHh-cCCcEEEecCccCCcccchhHHHHHHHHHHHHHHhh--
Confidence 5210 11222444555555666655555543332 32 3 44455565431111 244555543333333
Q ss_pred CCCeEEEEEcCCCcC
Q 007819 289 DKNHGVILLPEGLIE 303 (588)
Q Consensus 289 gk~~gvIlIpEGl~~ 303 (588)
++.+-+|+.|-.-..
T Consensus 293 ~~~~~~i~~P~~Y~~ 307 (594)
T 2v5c_A 293 GDVKPLITVPTEYDT 307 (594)
T ss_dssp SSCCCCEEECSSCSH
T ss_pred cccCceEEecccccc
Confidence 344568889976643
No 125
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=28.92 E-value=2.3e+02 Score=26.97 Aligned_cols=96 Identities=11% Similarity=0.196 Sum_probs=47.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
+||+|+.||.+. ....+++++.......+|.++.--.. ...+..+...=|-..+--...++.+.
T Consensus 2 ~rI~vl~SG~g~-----~~~~~l~~l~~~~~~~~i~~Vvs~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~r 65 (216)
T 2ywr_A 2 LKIGVLVSGRGS-----NLQAIIDAIESGKVNASIELVISDNP-----------KAYAIERCKKHNVECKVIQRKEFPSK 65 (216)
T ss_dssp EEEEEEECSCCH-----HHHHHHHHHHTTSSCEEEEEEEESCT-----------TCHHHHHHHHHTCCEEECCGGGSSSH
T ss_pred CEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----------ChHHHHHHHHcCCCEEEeCcccccch
Confidence 699999999862 34455555543221226666552110 00111122222322222122233444
Q ss_pred HHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHH
Q 007819 167 EQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 199 (588)
Q Consensus 167 e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~L 199 (588)
+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 98 (216)
T 2ywr_A 66 KEFEERMALELKKKGVELVVLAG-FMRILSHNFL 98 (216)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHH
T ss_pred hhhhHHHHHHHHhcCCCEEEEeC-chhhCCHHHH
Confidence 444 4567889999999766654 5544333444
No 126
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=28.39 E-value=57 Score=33.16 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccc--ccccCCCCChHHHHHHHHHHHHcCCc
Q 007819 105 VWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDML--GRTKDQIRTTEQVNAALTACKNLNLD 182 (588)
Q Consensus 105 I~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~l--gS~R~k~~~~e~~~~i~~~l~~l~Id 182 (588)
++..++.++..+|. .+-+-.|..|..... |.+....+++.=|...+ =+||+ .+.+.++..+..+..+||+
T Consensus 41 l~~~~~~l~~l~p~--fvsVT~gagg~~r~~----t~~~a~~i~~~~g~~~v~Hltc~~--~~~~~l~~~L~~~~~~GI~ 112 (304)
T 3fst_A 41 LWNSIDRLSSLKPK--FVSVTYGANSGERDR----THSIIKGIKDRTGLEAAPHLTCID--ATPDELRTIARDYWNNGIR 112 (304)
T ss_dssp HHHHHHHHHTTCCS--EEEECCCTTSSCHHH----HHHHHHHHHHHHCCCEEEEEESTT--SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCC--EEEEeeCCCCcchhH----HHHHHHHHHHHhCCCeeEEeecCC--CCHHHHHHHHHHHHHCCCC
Confidence 55556667655544 355666766643222 33344455553343222 13555 3778899999999999999
Q ss_pred EEEEecCccc------HHHHHHHHHHHHhc-CCCceEEEee
Q 007819 183 GLVIIGGVTS------NTDAAYLAETFAEA-KCPTKVVGVP 216 (588)
Q Consensus 183 ~LviIGGddS------~~~A~~Lae~~~~~-g~~i~VIgVP 216 (588)
.++++.||-. ...|..|-+++++. +..+.|.+-|
T Consensus 113 nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 113 HIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp EEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 9999999843 44578888877654 4445566556
No 127
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.12 E-value=52 Score=31.71 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=60.9
Q ss_pred CCeEEEEEec----CCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCcccccccc
Q 007819 85 PAIRVGIVFC----GRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 85 ~~~~IgIv~s----GG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
+..+|||++. .-..|=...++.|+-+++... +..+.-+ .+.
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~ 49 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLI---------------------------------PDE 49 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------EEC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC
Confidence 4568999997 445667777888888877643 3333211 111
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 161 DQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 161 ~k~~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
. . +....+.+.+...++||+|+.+.+.+.... +.+.+.| ++||. +|.+.....+ .++++|-
T Consensus 50 ~-~---~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 110 (294)
T 3qk7_A 50 P-G---EKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQN--FPFLA----LGRSHLPKPY-AWFDFDN 110 (294)
T ss_dssp T-T---CCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTT--CCEEE----ESCCCCSSCC-EEEEECH
T ss_pred C-h---hhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCC--CCEEE----ECCCCCCCCC-CEEEcCh
Confidence 1 1 112446778888999999999987654222 3344444 67774 4555443332 4667664
No 128
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=28.00 E-value=76 Score=30.18 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=24.9
Q ss_pred CCCeEEEEEec-CCCcccHHHHHHHHHHHHHhc
Q 007819 84 HPAIRVGIVFC-GRQSPGGHNVVWGLYDALKLH 115 (588)
Q Consensus 84 ~~~~~IgIv~s-GG~aPG~NnvI~gl~~~l~~~ 115 (588)
.+..+|||++. .-.-|-...++.|+-++++..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~ 41 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ 41 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc
Confidence 45679999997 567788899999999888754
No 129
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=27.94 E-value=4.3e+02 Score=25.73 Aligned_cols=90 Identities=10% Similarity=-0.086 Sum_probs=54.8
Q ss_pred CeEEEEEecCCCc-ccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 86 AIRVGIVFCGRQS-PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~a-PG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
..+||+++.+-.. |-...++.|+-++++.. +.++.-+. +. .
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--g~~~~~~~---------------------------------~~---~ 44 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--GLDLRILY---------------------------------AE---R 44 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--TCEEEEEE---------------------------------CT---T
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--CCeEEEEE---------------------------------CC---C
Confidence 4689999998877 88899999999888754 33332110 00 1
Q ss_pred ChHHHHHHHHHHHH--cCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 165 TTEQVNAALTACKN--LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 165 ~~e~~~~i~~~l~~--l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
+.+...+.++.+.. .++|++|+++ +... . ..+.+.+.+.| ++||.+=..
T Consensus 45 ~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~-~-~~~~~~~~~~g--iPvV~~~~~ 95 (350)
T 3h75_A 45 DPQNTLQQARELFQGRDKPDYLMLVN-EQYV-A-PQILRLSQGSG--IKLFIVNSP 95 (350)
T ss_dssp CHHHHHHHHHHHHHSSSCCSEEEEEC-CSSH-H-HHHHHHHTTSC--CEEEEEESC
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeC-chhh-H-HHHHHHHHhCC--CcEEEEcCC
Confidence 22333445555555 6999999997 4332 2 22334444444 788865333
No 130
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=27.87 E-value=1.1e+02 Score=31.88 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHc--CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l--~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ +.+.+||-.=.
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~-~~~kPVVlTGA 137 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLE-NLGKPVIVTGS 137 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHHHHHHHHEE-TCCSCEEEECC
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHHHHHh-cCCCCEEEeCC
Confidence 678888888877776 89999999999999765544444432 34567776543
No 131
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=27.57 E-value=3.9e+02 Score=25.13 Aligned_cols=105 Identities=11% Similarity=-0.040 Sum_probs=61.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+||++......|-...++.|+-++++.. +.++. ++..+. .+
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~~ 46 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEF--NLNAS--------------------------------QVGPSS---TD 46 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--TEEEE--------------------------------EECCSS---SC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHc--CCEEE--------------------------------EECCCC---CC
Confidence 578999998777788888899998887653 21111 011111 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCC-CCCCCCCCCCCchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~S~GFdT 236 (588)
++.....++.+...++|++|+.+.+.+. ... +.+.+.+.+ ++||.+ |.+ ..+..+ .++++|-
T Consensus 47 ~~~~~~~~~~l~~~~vdgiii~~~~~~~-~~~-~~~~~~~~~--ipvV~~----~~~~~~~~~~-~~v~~d~ 109 (303)
T 3d02_A 47 APQQVKIIEDLIARKVDAITIVPNDANV-LEP-VFKKARDAG--IVVLTN----ESPGQPSANW-DVEIIDN 109 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCHHH-HHH-HHHHHHHTT--CEEEEE----SCTTCTTCSE-EEESSCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCChHH-HHH-HHHHHHHCC--CeEEEE----ecCCCCCCce-EEEecCH
Confidence 3445566778888899999998864332 112 223444444 788765 443 332221 3566664
No 132
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=26.58 E-value=61 Score=31.32 Aligned_cols=91 Identities=11% Similarity=0.113 Sum_probs=59.8
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCe---------EecCHhhHhchhhcCCcccccccc
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT---------LEVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~---------~eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
+++++||+.|-.-. . +. .....++|.=+|..=|++..+ =.++++.++.|...|=- ++--..
T Consensus 4 ~~I~~gG~~~~~~~------~-~~--~~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~-~~~~~~ 73 (222)
T 3mel_A 4 VLLVAGGNPSDWPT------I-EP--ATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTET-LIQAPA 73 (222)
T ss_dssp EEEECSSCGGGCCC------C-CG--GGCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSS-EEECCS
T ss_pred EEEEECCCCccchh------H-Hh--hcCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCc-EEECCc
Confidence 56777998773210 0 11 123578999999998887543 24556677777766532 332222
Q ss_pred CCCCChHHHHHHHHHHHHcCCc-EEEEecCccc
Q 007819 161 DQIRTTEQVNAALTACKNLNLD-GLVIIGGVTS 192 (588)
Q Consensus 161 ~k~~~~e~~~~i~~~l~~l~Id-~LviIGGddS 192 (588)
. ++.-+++++++.+.+++-+ -++++||.|.
T Consensus 74 e--KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 74 E--KDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp S--CSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred c--CCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 2 2445789999999998887 9999999874
No 133
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=26.58 E-value=48 Score=31.17 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+.+++.++.+++.+|.+.|- +..-+-.++- ....+|||||-.
T Consensus 46 R~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 94 (174)
T 3lp6_A 46 RTPEAMFSYARGAAARGLEVIIAGAGG-AAHLPGMVAA-----ATPLPVIGVPVP 94 (174)
T ss_dssp TCHHHHHHHHHHHHHHTCCEEEEEEES-SCCHHHHHHH-----HCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCc-hhhhHHHHHh-----ccCCCEEEeeCC
Confidence 367889999999999999965555333 2222233332 235899999943
No 134
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=26.57 E-value=3.9e+02 Score=24.84 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCcEEEEe-cCcc----cHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 169 VNAALTACKNLNLDGLVII-GGVT----SNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviI-GGdd----S~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
++.+++.++++|++++=+- ...- +...+..+.+.+.+.|+.+..++.|-
T Consensus 16 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 69 (278)
T 1i60_A 16 LKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALV 69 (278)
T ss_dssp HHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeecccc
Confidence 6678888899999998877 4321 11345677788888888777788874
No 135
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=26.35 E-value=48 Score=31.19 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+..++.++.+++.+|.+.|- +..-.-.++- ....+|||||-.
T Consensus 51 R~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 51 RTPDRLFSFAEQAEANGLHVIIAGNGG-AAHLPGMLAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp TCHHHHHHHHHHTTTTTCSEEEEEEES-SCCHHHHHHH-----TCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCh-hhhhHHHHHh-----ccCCCEEEeeCC
Confidence 367888888898888999955554332 2222233332 346899999953
No 136
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=26.31 E-value=89 Score=32.01 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHc----CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l----~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.++.+ .+.+||-.
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 115 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVH--TDKPIVLV 115 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 667777777777765 79999999999999765544445443 45677765
No 137
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=26.24 E-value=1.8e+02 Score=27.78 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=49.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcC---chhhhhcCCeEecCHhhHhchhhcCCccccccccC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLG---GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~ 161 (588)
.++||+|+.||... | ...++++++...-..+|.++.- ...|+ . +-..=|-...--.+.
T Consensus 6 ~~~ri~vl~SG~gs---n--l~all~~~~~~~l~~~I~~Visn~~~a~~l-------------~-~A~~~gIp~~~~~~~ 66 (209)
T 4ds3_A 6 KRNRVVIFISGGGS---N--MEALIRAAQAPGFPAEIVAVFSDKAEAGGL-------------A-KAEAAGIATQVFKRK 66 (209)
T ss_dssp CCEEEEEEESSCCH---H--HHHHHHHHTSTTCSEEEEEEEESCTTCTHH-------------H-HHHHTTCCEEECCGG
T ss_pred CCccEEEEEECCcH---H--HHHHHHHHHcCCCCcEEEEEEECCcccHHH-------------H-HHHHcCCCEEEeCcc
Confidence 35799999999832 2 4556665543222246666552 11221 1 111112222222222
Q ss_pred CCCChHHH-HHHHHHHHHcCCcEEEEecCcccHHHHHHH
Q 007819 162 QIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 199 (588)
Q Consensus 162 k~~~~e~~-~~i~~~l~~l~Id~LviIGGddS~~~A~~L 199 (588)
.+.+.+.+ +.+++.+++++.|.+|+.| .+-.-....|
T Consensus 67 ~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l 104 (209)
T 4ds3_A 67 DFASKEAHEDAILAALDVLKPDIICLAG-YMRLLSGRFI 104 (209)
T ss_dssp GSSSHHHHHHHHHHHHHHHCCSEEEESS-CCSCCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEec-cccCcCHHHH
Confidence 33444444 4678999999999777775 4444334444
No 138
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=26.18 E-value=1.1e+02 Score=32.76 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHc---CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l---~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-.++. +.+.+||-.=
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l--~~~KPVVlTG 201 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFML--RTPVPVVFTG 201 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHE--ECSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHHHHHHHh--CCCCCEEEEC
Confidence 567777777777665 8999999999999977555445444 4456777654
No 139
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=25.73 E-value=1.9e+02 Score=28.12 Aligned_cols=95 Identities=13% Similarity=-0.024 Sum_probs=58.9
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
....+|.+.+.+|+.=-+-.-+.+.+ ++ ..|++|+-. | ..++.+.+-..-..-+.+++|-|-...
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~--L~--~~G~~Vi~L--G---------~~vp~e~l~~~~~~~~~d~V~lS~l~~ 185 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTAL--LR--ANGYNVVDL--G---------RDVPAEEVLAAVQKEKPIMLTGTALMT 185 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHH--HH--HTTCEEEEE--E---------EECCSHHHHHHHHHHCCSEEEEECCCT
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHH--HH--HCCCEEEEC--C---------CCCCHHHHHHHHHHcCCCEEEEEeecc
Confidence 34568999999998744433333332 22 237777411 1 134554443333333455777665444
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccH
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSN 193 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~ 193 (588)
.+...+.+.++.+++.+.+.-|++||....
T Consensus 186 ~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 186 TTMYAFKEVNDMLLENGIKIPFACGGGAVN 215 (258)
T ss_dssp TTTTHHHHHHHHHHTTTCCCCEEEESTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEECccCC
Confidence 456788999999999999988999998764
No 140
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=25.51 E-value=4.4e+02 Score=25.06 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcc---------cHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVT---------SNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGdd---------S~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
.++..++.+++++++++=+..... +...+..+.+.+.+.|+.+..++.|.
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 467788899999999998876543 34567788888888897666666653
No 141
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=25.38 E-value=97 Score=31.70 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHc----CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l----~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.++.+ .+.+||-.=
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 119 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFVA 119 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEeC
Confidence 667777777777765 79999999999999765554445443 455777653
No 142
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=25.23 E-value=1.2e+02 Score=29.67 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=61.7
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCC
Q 007819 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~ 165 (588)
..+||+++..-..|=...++.|+-++++.. +.++. +...+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~d 45 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL--GIDVT--------------------------------YDGPTE---PS 45 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------ECCCSS---CC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHh--CCEEE--------------------------------EECCCC---CC
Confidence 358999987766777788888888777643 11111 111111 13
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCC-Cchh
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV-GFDT 236 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~-GFdT 236 (588)
.+.....++.+...++|+||+.+-+.+... ..+ +.+.+.| ++||.+ |.++........+ +||-
T Consensus 46 ~~~q~~~i~~li~~~vdgiii~~~~~~~~~-~~~-~~a~~~g--ipvV~~----d~~~~~~~~~~~v~~~D~ 109 (316)
T 1tjy_A 46 VSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-PAL-KRAMQRG--VKILTW----DSDTKPECRSYYINQGTP 109 (316)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSSTTH-HHH-HHHHHTT--CEEEEE----SSCCCGGGCSEEEESCCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCc--CEEEEe----cCCCCCCCceEEEecCCH
Confidence 344556678888899999999887655211 122 3334444 788876 4444322212456 6774
No 143
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=25.19 E-value=66 Score=33.76 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
..+||.||=||| --|+..+.+ .+.....+||... |-.|.... .....-.-
T Consensus 2 ~~mkvlviG~gg---re~ala~~l----~~s~~v~~v~~~p-gn~g~~~~----------------------~~~~~~~~ 51 (431)
T 3mjf_A 2 NAMNILIIGNGG---REHALGWKA----AQSPLADKIYVAP-GNAGTALE----------------------PTLENVDI 51 (431)
T ss_dssp -CEEEEEEECSH---HHHHHHHHH----TTCTTEEEEEEEE-CCHHHHHC----------------------TTCEECCC
T ss_pred CCcEEEEECCCH---HHHHHHHHH----HhCCCCCEEEEEC-CCHHHhhh----------------------cccceecC
Confidence 358999998886 345555544 2222224666653 44443211 00000011
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
+..+.+.+++.++++++|.++ +|.++.. +..+++.+.+.| ++++|-
T Consensus 52 ~~~d~~~l~~~a~~~~id~vv-~g~e~~l--~~~~~~~l~~~G--i~~~Gp 97 (431)
T 3mjf_A 52 AATDIAGLLAFAQSHDIGLTI-VGPEAPL--VIGVVDAFRAAG--LAIFGP 97 (431)
T ss_dssp CTTCHHHHHHHHHHTTEEEEE-ECSHHHH--HTTHHHHHHHTT--CCEESC
T ss_pred CcCCHHHHHHHHHHhCcCEEE-ECCchHH--HHHHHHHHHhcC--CCeeCC
Confidence 234567788899999999655 4544432 355667777666 455543
No 144
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=24.96 E-value=4.7e+02 Score=25.19 Aligned_cols=93 Identities=13% Similarity=-0.039 Sum_probs=56.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
+..+|||++..-..|-...++.|+-++++.. +.++ ++..+. .
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~l---------------------------------~~~~~~---~ 45 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--GLPY---------------------------------VPLTTE---G 45 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCCE---------------------------------EEEECT---T
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--CCEE---------------------------------EEecCC---C
Confidence 3568999998777788888899998887643 1111 111111 1
Q ss_pred ChHHHHHHHHHHHHcC--CcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 165 TTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~--Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
+.+.....++.+...+ +|++|+.+.+.+.. ..+.+.+.+.+ ++||.+-..+
T Consensus 46 ~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~ 98 (332)
T 2rjo_A 46 SSEKGIADIRALLQKTGGNLVLNVDPNDSADA--RVIVEACSKAG--AYVTTIWNKP 98 (332)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEECCSSHHHH--HHHHHHHHHHT--CEEEEESCCC
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CeEEEECCCC
Confidence 2344455677777788 99999988765421 12223333344 7888764433
No 145
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=24.94 E-value=1.1e+02 Score=31.27 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHc--CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l--~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-.++. .+.+.+||-.=
T Consensus 56 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll-~~~~kPVVlTG 108 (328)
T 1wls_A 56 QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFML-RNPPIPIVLTG 108 (328)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHE-ESCSSEEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHH-hCCCCCEEEEC
Confidence 678888888888776 8999999999999976554444322 24566777654
No 146
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=24.79 E-value=98 Score=31.72 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHc----CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l----~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.++.+ .+.+||-.=
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 119 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLH--STKPVVLVG 119 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCC--CSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEEC
Confidence 667777777777765 79999999999999765544445443 456777653
No 147
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=24.57 E-value=49 Score=29.69 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCceEEEeeecccCCC
Q 007819 196 AAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 196 A~~Lae~~~~~g~~i~VIgVPKTIDNDL 223 (588)
...|.+.+.+.+...-|||.|++.||..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCc
Confidence 4566666666778889999999999843
No 148
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=24.48 E-value=46 Score=31.21 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+..++.++.+++.+|.+.|- +..-+-.++ -....+|||||-.
T Consensus 50 R~p~~l~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA-----~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 50 RTPDYMFEYAETARERGLKVIIAGAGG-AAHLPGMVA-----AKTNLPVIGVPVQ 98 (170)
T ss_dssp TSHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHH-----TTCCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCc-hhhhHHHHH-----hccCCCEEEeeCC
Confidence 467888888888888889855444332 222222232 2456899999964
No 149
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=23.90 E-value=6.5e+02 Score=28.38 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=78.3
Q ss_pred hhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcc---------c-----HHHHHHHHHHHHhcCCCceE
Q 007819 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT---------S-----NTDAAYLAETFAEAKCPTKV 212 (588)
Q Consensus 147 ~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGdd---------S-----~~~A~~Lae~~~~~g~~i~V 212 (588)
|..+ |+ |++.+|..+ +.+.+.+.++.+..++++.|..==-|| . ......|.+|++++| |.|
T Consensus 149 f~~R-G~-m~d~~r~~~-~~~~~~~~id~ma~~K~N~~h~hl~Dd~~~~~~wr~~y~~~~~~~~~elv~ya~~rg--I~v 223 (737)
T 2v5d_A 149 VSAR-GI-VEGFYGTPW-THQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENK--VDF 223 (737)
T ss_dssp SSEE-EE-ECCCSSSCC-CHHHHHHHHHHHHHTTCCEEECCCSCCSTTTTTC-----CTTHHHHHHHHHHHHHTT--CEE
T ss_pred Ccee-ee-ecccCCCCC-CHHHHHHHHHHHHHhCCeEEEEecccccchhhccCcCCCHHHHHHHHHHHHHHHHCC--CEE
Confidence 3444 55 888888654 788999999999999999887543232 1 226778889999888 566
Q ss_pred EE-e-eecccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhccc--eEEecccccccCCh-hhHHHHHHHHHHHHHH
Q 007819 213 VG-V-PVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEK--VILGEEVAASKLTL-FDLTKQICDAVQARAE 287 (588)
Q Consensus 213 Ig-V-PKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~~dA~S~~k--vlI~Ee~~~~~~tL-~~iv~~i~~~I~~R~~ 287 (588)
|- + | .-|+ +++-+.+-+.|..+...+..-..-..+ .+-.-|+......- ..+++.+.+.+.+..
T Consensus 224 v~~i~P---~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~g~~~f~ig~DEi~~~~~~~q~~v~~~~~~~~~~~~- 292 (737)
T 2v5d_A 224 VFGISP---GIDI-------RFDGDAGEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAK- 292 (737)
T ss_dssp EECCCC---GGGC-------CCSSBTTHHHHHHHHHHHHHHHHHTCCEEEEECSSCCCCCHHHHHHHHHHHHHHTHHHH-
T ss_pred EEecCC---Cccc-------cCCCcccHHHHHHHHHHHHHHHhcCCcEEEEcCccCCcccchhHHHHHHHHHHHHHHhh-
Confidence 51 1 3 1233 333344445555444444332221123 44455565431111 244555543333333
Q ss_pred CCCCeEEEEEcCCCc
Q 007819 288 QDKNHGVILLPEGLI 302 (588)
Q Consensus 288 ~gk~~gvIlIpEGl~ 302 (588)
++.+-+|+.|-.-.
T Consensus 293 -~~~~~~i~~P~~y~ 306 (737)
T 2v5d_A 293 -GDVKPLITVPTEYD 306 (737)
T ss_dssp -SSCCCCEEECSCCB
T ss_pred -cccCceEEeccccc
Confidence 34456888997664
No 150
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=23.73 E-value=1.9e+02 Score=29.62 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccc--cccccC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDM--LGRTKD 161 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~--lgS~R~ 161 (588)
..++||.+|+ |-.|+.--. +.+++++++. ++.++.-+..|-.- ++..+.++.+...+-.++ .+.+-.
T Consensus 23 ~~m~ki~~v~--Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~tG~h~-------~~~~~~~~~~~i~~~~~l~~~~~~~~ 91 (396)
T 3dzc_A 23 NAMKKVLIVF--GTRPEAIKM-APLVQQLCQD-NRFVAKVCVTGQHR-------EMLDQVLELFSITPDFDLNIMEPGQT 91 (396)
T ss_dssp -CCEEEEEEE--CSHHHHHHH-HHHHHHHHHC-TTEEEEEEECCSSS-------HHHHHHHHHTTCCCSEECCCCCTTCC
T ss_pred CCCCeEEEEE--eccHhHHHH-HHHHHHHHhC-CCCcEEEEEecccH-------HHHHHHHHhcCCCCceeeecCCCCCC
Confidence 3457888888 567776554 7788888754 56677545545321 111111121111111100 001000
Q ss_pred CC-CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 162 QI-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 162 k~-~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.. .+-.-+.++.+.+++.+-|.+++.|+..+.-.++..|. ..+|+|+++=
T Consensus 92 ~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~-----~~~IPv~h~~ 142 (396)
T 3dzc_A 92 LNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAY-----YQQIPVGHVE 142 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHH-----TTTCCEEEET
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHH-----HhCCCEEEEE
Confidence 00 12345677788899999999999998776444343332 2347888763
No 151
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=23.31 E-value=2.5e+02 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEc
Q 007819 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL 125 (588)
Q Consensus 85 ~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~ 125 (588)
+..+|||++..-..|=...++.|+-++++.. +.++.-+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~ 42 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--GYRLSVID 42 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--TCEEEEEC
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 4579999999888999999999999988755 56666544
No 152
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=22.82 E-value=48 Score=31.43 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecC-cccHHHHHHHHHHHHhcCCCceEEEeeecc
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGG-VTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGG-ddS~~~A~~Lae~~~~~g~~i~VIgVPKTI 219 (588)
++++.+.+..++.++.+++.+|.+.| .+.+- -.++- ....+|||||-..
T Consensus 52 R~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--gvvA~-----~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 52 RTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--GMVAS-----ITHLPVIGVPVKT 101 (183)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--HHHHH-----HCSSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCcccccH--HHHHh-----ccCCCEEEeeCCC
Confidence 46788888889888889995554433 33332 33332 2468999999644
No 153
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=22.78 E-value=48 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+..++.++.+++.+|.+.|- +..-.-.++- ....+|||||-.
T Consensus 42 R~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 90 (163)
T 3ors_A 42 RTPKMMVQFASEARERGINIIIAGAGG-AAHLPGMVAS-----LTTLPVIGVPIE 90 (163)
T ss_dssp TSHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHHH-----HCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCc-hhhhHHHHHh-----ccCCCEEEeeCC
Confidence 367888888888888889955554332 2222223332 235899999954
No 154
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=22.39 E-value=3.1e+02 Score=26.50 Aligned_cols=100 Identities=12% Similarity=0.199 Sum_probs=60.5
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeE---------ecCHhhHhchhhcCCcccccccc
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTL---------EVTKEILSTYKNQGGYDMLGRTK 160 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~---------eLt~~~v~~~~n~GGs~~lgS~R 160 (588)
++|++||+.|- ......+ ++. ...++|.=+|..-|++..+. -++++.+..|.. ++- .
T Consensus 34 v~Iv~~G~~~~-~~~~~~~---~~~---~~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~-----~i~--~ 99 (231)
T 2omk_A 34 AIILANGEYPA-HELPLRL---LAE---AQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS-----IIL--Q 99 (231)
T ss_dssp EEEECSSSCCC-SHHHHHH---HHH---CSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG-----GEE--C
T ss_pred EEEEECCCCch-hHHHHHH---Hhc---CCEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC-----EEE--e
Confidence 56667787662 2222222 221 23689999999988875432 334555555551 111 1
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEecCcc-----cHHHHHHHHHHH
Q 007819 161 DQIRTTEQVNAALTACKNLNLDGLVIIGGVT-----SNTDAAYLAETF 203 (588)
Q Consensus 161 ~k~~~~e~~~~i~~~l~~l~Id~LviIGGdd-----S~~~A~~Lae~~ 203 (588)
..-++.-+.++++..+.+++.+-++++|+-| ++.+...|..+.
T Consensus 100 ~~~kD~TD~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~~ 147 (231)
T 2omk_A 100 ISDQETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEYM 147 (231)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHHH
Confidence 1122345789999999999999999999965 466666676653
No 155
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.27 E-value=34 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.3
Q ss_pred hhhhccChhhHhhhhccC
Q 007819 337 SALFEFLPPFIKKQLLLQ 354 (588)
Q Consensus 337 ~~l~~~lp~~i~~qll~~ 354 (588)
.++|+.||..||++|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 468999999999998763
No 156
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=22.20 E-value=99 Score=31.65 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHc----CCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l----~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.++.+ .+.+||-.=
T Consensus 64 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 117 (330)
T 1wsa_A 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVK--SQKPVVLVG 117 (330)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCC--CSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHHHHHHHcC--CCCCEEEeC
Confidence 567777777777664 79999999999999765544445443 456777653
No 157
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.06 E-value=5.5e+02 Score=25.08 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+..+|||++..-.-|-...++.|+-+.+... |..+. +.....
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~-- 101 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQL--GASVV---------------------------------VSMVER-- 101 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECCS--
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCCC--
Confidence 34568999997666676777888887776532 22221 111110
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
.+.+.....++.+...++||+|+.+..+... .+...+... +++||.+ |.+..... .++++|-
T Consensus 102 ~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~---~~~~~~~~~--~iPvV~i----~~~~~~~~--~~V~~d~ 163 (349)
T 1jye_A 102 SGVEACKTAVHNLLAQRVSGLIINYPLDDQD---AIAVEAACT--NVPALFL----DVSDQTPI--NSIIFSH 163 (349)
T ss_dssp SSHHHHHHHHHHHHTTTCSCEEEESCCCHHH---HHHHHHHTT--TSCEEES----SSCTTSSS--CEEEECH
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEecCCCChh---HHHHHHhhC--CCCEEEE----cccCCCCC--CEEEEch
Confidence 1223445567788889999999997654322 122333333 4777765 33221111 4677774
No 158
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.94 E-value=83 Score=31.39 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCch
Q 007819 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (588)
Q Consensus 169 ~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 235 (588)
..+.++.+...++||+|+.+-..+..... .+.+.+ ++||.+ |.+.....+ .++++|
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~~~~~~~----~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D 172 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAKGDPHID----AIRARG--LPAVIA----DQPAREEGM-PFIAPN 172 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCTTCHHHH----HHHHHT--CCEEEE----SSCCSCTTC-CEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCChHHHH----HHHHCC--CCEEEE----CCccCCCCC-CEEEeC
Confidence 34568889999999999998754433222 333344 678754 555543322 466666
No 159
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=21.91 E-value=2.2e+02 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=27.7
Q ss_pred eEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEecCcc
Q 007819 136 TLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191 (588)
Q Consensus 136 ~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviIGGdd 191 (588)
+.-+..+.++.++..||..++=. ..+++.. .+.+. ++|+||+-||.|
T Consensus 26 ~~~~~~~~~~~l~~aG~~pv~lp----~~~~~~~---~~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 26 VTYTQQRYVDAIQKVGGFPIALP----IDDPSTA---VQAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp ----CHHHHHHHHHHTCEEEEEC----CCCGGGH---HHHHH--TCSEEEECCCSC
T ss_pred hhhhhHHHHHHHHHCCCEEEEEe----CCCchHH---HHHHh--hCCEEEECCCCC
Confidence 34467788888999999744321 1222212 23333 799999999965
No 160
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=21.90 E-value=74 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCeEEEEEcCCCcCcchh
Q 007819 277 QICDAVQARAEQDKNHGVILLPEGLIESIPE 307 (588)
Q Consensus 277 ~i~~~I~~R~~~gk~~gvIlIpEGl~~~ipe 307 (588)
++.+++.+-.+ .++||+|+|.|.+.+.+++
T Consensus 40 e~~~~~~~l~~-~~digIIlIte~ia~~i~~ 69 (102)
T 2i4r_A 40 EIVKAVEDVLK-RDDVGVVIMKQEYLKKLPP 69 (102)
T ss_dssp HHHHHHHHHHH-CSSEEEEEEEGGGSTTSCH
T ss_pred HHHHHHHHHhh-CCCeEEEEEeHHHHHHHHH
Confidence 45555555444 4789999999999998775
No 161
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=21.73 E-value=1.8e+02 Score=22.64 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHcCCc---------EEEEecCcccHHHHHHHHHHHHhcCCC
Q 007819 164 RTTEQVNAALTACKNLNLD---------GLVIIGGVTSNTDAAYLAETFAEAKCP 209 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id---------~LviIGGddS~~~A~~Lae~~~~~g~~ 209 (588)
.++++-++..+.|++.+++ +-|.+|...+-..|..+.+.+++.|++
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 4667778888888887776 457788888989999999988887864
No 162
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=21.67 E-value=91 Score=30.00 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
.|++-++.+++..++++|+.+|+---.|. +|.++.+.+ .+ ++|.|.
T Consensus 35 NT~~tl~la~era~e~~Ik~iVVASssG~--TA~k~~e~~--~~---~lVvVT 80 (206)
T 1t57_A 35 NTERVLELVGERADQLGIRNFVVASVSGE--TALRLSEMV--EG---NIVSVT 80 (206)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHTTC--CS---EEEEEC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCH--HHHHHHHHc--cC---CEEEEe
Confidence 36778899999999999999999877665 788888755 23 888887
No 163
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=21.45 E-value=36 Score=30.82 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCC
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ 226 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~ 226 (588)
+++.+++.+++.+.+-++||||-.-...+..+.+ .+.+--||..+++|---+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~Fp 132 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYYP 132 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEECC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEECC
Confidence 4667788888878888999999776666554322 478888999998886433
No 164
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=21.30 E-value=2.3e+02 Score=27.64 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=52.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (588)
Q Consensus 88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e 167 (588)
.|||.=|| -|+-+|.+.+.+. .|+..++-|-+-- .--|-+-+++.+. +
T Consensus 5 ~IgvfDSG---vGGltv~~~i~~~----lP~~~~iy~~D~~----~~Pyg~~s~~~i~---------------------~ 52 (267)
T 2gzm_A 5 AIGVIDSG---VGGLTVAKELIRQ----LPKERIIYLGDTA----RCPYGPRSREEVR---------------------Q 52 (267)
T ss_dssp CEEEEESS---STTHHHHHHHHHH----CTTSCEEEEECTT----TCCCTTSCHHHHH---------------------H
T ss_pred cEEEEeCC---ccHHHHHHHHHHH----CCCCCEEEecCCC----CCCCCCCCHHHHH---------------------H
Confidence 69999998 7888888888754 4554444333210 0001111222211 2
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
...++++.+.+.+.|++|+-....|......|.+ .++++||||
T Consensus 53 ~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~-----~~~iPvigi 95 (267)
T 2gzm_A 53 FTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQK-----QLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHH-----HCSSCEEES
T ss_pred HHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHH-----hCCCCEEee
Confidence 2455678888899999888665444323333333 246899997
No 165
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=21.27 E-value=2.9e+02 Score=25.54 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCC--CCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHHHHHHHHHHHc-CCc
Q 007819 106 WGLYDALKLHNP--KSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL-NLD 182 (588)
Q Consensus 106 ~gl~~~l~~~~~--~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l-~Id 182 (588)
+-+.+.+....+ |.+=++|+.|..+..... +-..-..+.+...+|..+..........++.++.+.+.++++ +++
T Consensus 112 ~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~--~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (276)
T 3ksm_A 112 QLAARALLATLDLSKERNIALLRLRAGNASTD--QREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTID 189 (276)
T ss_dssp HHHHHHHHHHSCTTSCEEEEECBCCTTCHHHH--HHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCCchhHH--HHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCce
Confidence 344555555544 778888888764321100 000111222333345433322222232344456666677776 788
Q ss_pred EEEEecCcccHHHHHHHHHHHHhcCC--CceEEE
Q 007819 183 GLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVG 214 (588)
Q Consensus 183 ~LviIGGddS~~~A~~Lae~~~~~g~--~i~VIg 214 (588)
++++. +|.+ |.-+.+.+++.|. ++.|+|
T Consensus 190 ai~~~--~d~~--a~g~~~al~~~g~p~di~vig 219 (276)
T 3ksm_A 190 GLFTP--NEST--TIGALVAIRQSGMSKQFGFIG 219 (276)
T ss_dssp EEECC--SHHH--HHHHHHHHHHTTCTTSSEEEE
T ss_pred EEEEC--Cchh--hhHHHHHHHHcCCCCCeEEEE
Confidence 87654 3332 3334455666674 455555
No 166
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.16 E-value=39 Score=30.77 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=34.7
Q ss_pred HHHHHHHHHH-HcCCcEEEEecCcccHHHHHHHHHHHHhc-CCCceEEEeeecccCCC
Q 007819 168 QVNAALTACK-NLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDL 223 (588)
Q Consensus 168 ~~~~i~~~l~-~l~Id~LviIGGddS~~~A~~Lae~~~~~-g~~i~VIgVPKTIDNDL 223 (588)
+..-+++.+. ..++|.+|++-||+=++-+ .+.++++ |..+-|+|.|+.....|
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~pl---v~~lr~~~G~~V~v~g~~~~~s~~L 149 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLL---VERIQQRYNKKVTVYGVPRLTSQTL 149 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHH---HHHHHHHHCCEEEEEECGGGSCHHH
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHH---HHHHHHHcCcEEEEEeCCCcChHHH
Confidence 3444444332 2579999999999966554 4556665 88888888876544333
No 167
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=20.99 E-value=3.8e+02 Score=24.99 Aligned_cols=48 Identities=4% Similarity=-0.028 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEe
Q 007819 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (588)
Q Consensus 168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgV 215 (588)
.++.+++.++++|++++=+-+.+-+...+..+.+.+.+.|+.+..++.
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 66 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCR 66 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHHHHHHHCHHHHHHHHHHHTCEESCEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccccccCHHHHHHHHHHcCCceEEeec
Confidence 366788889999999998776543445677788888888876655554
No 168
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=20.94 E-value=2.7e+02 Score=28.54 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCC
Q 007819 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (588)
Q Consensus 84 ~~~~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~ 163 (588)
.+.++++|+.+|-..| -++++++++ |.+++.+.......-.. ....+.+.. +. ..
T Consensus 3 ~~~k~l~Il~~~~~~~-------~i~~aa~~l--G~~vv~v~~~~~~~~~~------~~~~d~~~~------~~----~~ 57 (425)
T 3vot_A 3 KRNKNLAIICQNKHLP-------FIFEEAERL--GLKVTFFYNSAEDFPGN------LPAVERCVP------LP----LF 57 (425)
T ss_dssp CCCCEEEEECCCTTCC-------HHHHHHHHT--TCEEEEEEETTSCCCCS------CTTEEEEEE------EC----TT
T ss_pred CCCcEEEEECCChhHH-------HHHHHHHHC--CCEEEEEECCCcccccC------HhhccEEEe------cC----CC
Confidence 3568999998777766 345666644 77887775433321100 000111110 10 11
Q ss_pred CCh-HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH
Q 007819 164 RTT-EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203 (588)
Q Consensus 164 ~~~-e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~ 203 (588)
.++ .-++.+.+.++++++|+++. +.+.....|+.|++.+
T Consensus 58 ~d~~~~~~~~~~~~~~~~id~V~~-~~e~~~~~~a~l~e~l 97 (425)
T 3vot_A 58 EDEEAAMDVVRQTFVEFPFDGVMT-LFEPALPFTAKAAEAL 97 (425)
T ss_dssp TCHHHHHHHHHHHHHHSCCSEEEC-CCGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEE-CCchhHHHHHHHHHHc
Confidence 233 33566777888899998765 4455666777787753
No 169
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=20.92 E-value=97 Score=28.88 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeee
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPK 217 (588)
++++.+.+.+++.++.+++.+|.+.|-. ..-+-.++- ....+|||||-
T Consensus 44 Rtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~ 91 (166)
T 3oow_A 44 RTPDKMFDYAETAKERGLKVIIAGAGGA-AHLPGMVAA-----KTTLPVLGVPV 91 (166)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEECSS-CCHHHHHHH-----TCSSCEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCcc-hhhHHHHHh-----ccCCCEEEeec
Confidence 3778888888888888888766654432 222223332 34689999994
No 170
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.76 E-value=1.5e+02 Score=28.03 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=60.0
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (588)
Q Consensus 87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~ 166 (588)
.+|||++..-..|-...++.|+-+.++.. +.+++ +..+. .+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 43 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL--GYKII---------------------------------VEDSQ---NDS 43 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TCH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc--CcEEE---------------------------------EecCC---CCH
Confidence 47899988777777888888888877643 22221 11111 123
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchh
Q 007819 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (588)
Q Consensus 167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 236 (588)
+...+.++.+...++||+++.+.+.+... ..+ +.+.+.| ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 105 (283)
T 2ioy_A 44 SKELSNVEDLIQQKVDVLLINPVDSDAVV-TAI-KEANSKN--IPVITI----DRSANGGDVVCHIASDN 105 (283)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhhH-HHH-HHHHHCC--CeEEEe----cCCCCCcceeEEEecCh
Confidence 33455677788899999999876543211 122 3344444 677754 55544321114677763
No 171
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.75 E-value=5.2e+02 Score=24.30 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHc-CCcEEEEecCcccHHHHHHHHHHHHhcCC--CceEEEe
Q 007819 166 TEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVGV 215 (588)
Q Consensus 166 ~e~~~~i~~~l~~l-~Id~LviIGGddS~~~A~~Lae~~~~~g~--~i~VIgV 215 (588)
++.++.+.+.++++ +++++++. +|.+ |.-+.+.+++.|. ++.|||+
T Consensus 172 ~~~~~~~~~~l~~~~~~~ai~~~--~d~~--a~g~~~al~~~g~~~di~vig~ 220 (305)
T 3g1w_A 172 LHSRRVAHQLLEDYPNLAGIFAT--EANG--GVGVGDAVRLESRAGEIQIISF 220 (305)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEES--SHHH--HHHHHHHHHHTTCTTTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEC--CCcc--hhhHHHHHHhcCCCCCeEEEEe
Confidence 34455566666665 68877653 3332 2334455566675 4566654
No 172
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=20.62 E-value=1.5e+02 Score=33.16 Aligned_cols=137 Identities=9% Similarity=0.113 Sum_probs=90.1
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHH
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV 169 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~ 169 (588)
+|...+....|.--.+..+.+-+.. + + ..+.+++ --.|..+ |+ ||-.+|..+.+.+.+
T Consensus 47 ~i~I~a~~~~G~~~glqTL~QL~~~---~--------~-------~~~~I~D--~P~f~~R-G~-mlD~sR~~f~~~~~i 104 (627)
T 2epl_X 47 YYQVSYKQPHQLYRALALLSAALRS---G--------Q-------DEVQIEE--EAAYEDL-AY-MADCSRNAVLNLSSA 104 (627)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHHT---T--------C-------SSEEEEE--CCSCSEE-EE-EEECSSSCCBCHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHhhc---C--------C-------CceEEEe--CCCCCcc-ce-EEecCCCCCCCHHHH
Confidence 5667777888887777777655431 1 1 0222222 2334444 55 899999877789999
Q ss_pred HHHHHHHHHcCCcEEEE----------------ecCcccHHHHHHHHHHHHhcCCCceEE---Eeeeccc----------
Q 007819 170 NAALTACKNLNLDGLVI----------------IGGVTSNTDAAYLAETFAEAKCPTKVV---GVPVTLN---------- 220 (588)
Q Consensus 170 ~~i~~~l~~l~Id~Lvi----------------IGGddS~~~A~~Lae~~~~~g~~i~VI---gVPKTID---------- 220 (588)
.+.++.+..+++|.|-. .||-=|......|-+|++++| |.|| =+|.=..
T Consensus 105 k~~id~ma~~KlN~lh~Hl~D~~ei~~~P~l~~~~~~YT~~di~eiv~yA~~rg--I~VIPEID~PGH~~a~l~~g~~~y 182 (627)
T 2epl_X 105 KKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFD--MSFVPCIQTLAHLSAFVKWGIKEV 182 (627)
T ss_dssp HHHHHHHHHHTCCEEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHTT--CEEEEECCSSSCCHHHHTCCSHHH
T ss_pred HHHHHHHHHcCCcEEEEEeecccccCCCcccCccCCCcCHHHHHHHHHHHHHcC--CEEEEeeccCCcHHHHHhhhhhhc
Confidence 99999999999999974 267778999999999999998 4554 1221000
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 007819 221 GDLKNQFVETNVGFDTICKVNSQLISNVCT 250 (588)
Q Consensus 221 NDL~~~~ie~S~GFdTA~k~~ae~I~nl~~ 250 (588)
.+|....-..+++-+.+.+++..+++.++.
T Consensus 183 p~L~~~~~~l~~~~~~t~~fl~~v~~Ev~~ 212 (627)
T 2epl_X 183 QELRDVEDILLIGEEKVYDLIEGMFQTMAH 212 (627)
T ss_dssp HTTEEETTEECTTCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCccCCCChhHHHHHHHHHHHHHh
Confidence 111111112466777788888888877776
No 173
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=20.59 E-value=2.3e+02 Score=27.95 Aligned_cols=77 Identities=14% Similarity=0.253 Sum_probs=52.4
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHH
Q 007819 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV 169 (588)
Q Consensus 90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~ 169 (588)
.||++|=-=||+-|++.-+.+ ..+ .+|+++++|+ .+.+. +++.+
T Consensus 174 lvvitGCsH~GI~Niv~~a~~----~~g-~~i~~viGGf-------------------------HL~~~------~~~~l 217 (267)
T 3h3e_A 174 LVVITGCSHRGIDNILLDIAE----TFN-ERIKMVVGGF-------------------------HLLKS------SDDEI 217 (267)
T ss_dssp EEEEESCCTTCHHHHHHHHHT----TCS-SCEEEEEEEC-------------------------CCTTS------CHHHH
T ss_pred EEEEeCCCCcCHHHHHHHHHH----HhC-CCceEEEecc-------------------------ccCCC------CHHHH
Confidence 466777777999888877653 333 7899888654 33322 56889
Q ss_pred HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHH
Q 007819 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203 (588)
Q Consensus 170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~ 203 (588)
+++++.+++++++.++..==.|.. ..+.|.+.+
T Consensus 218 ~~tl~~l~~~~~~~i~~~HCTg~~-a~~~L~~~l 250 (267)
T 3h3e_A 218 EKIVKAFNELGVETVVPCHCTGER-AVDIFKREF 250 (267)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCHH-HHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEEECCCCHH-HHHHHHHHC
Confidence 999999999999977665444433 445565554
No 174
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=20.58 E-value=2.5e+02 Score=29.43 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEE
Q 007819 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (588)
Q Consensus 166 ~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIg 214 (588)
..+.+.+++.++++++|.+++ |.++.. +..+++.+.+.| ++++|
T Consensus 69 ~~d~~~l~~~a~~~~id~vv~-g~E~~l--~~~~~~~l~~~G--i~~~G 112 (442)
T 3lp8_A 69 INSTIEVIQVCKKEKIELVVI-GPETPL--MNGLSDALTEEG--ILVFG 112 (442)
T ss_dssp TTCHHHHHHHHHHTTCCEEEE-CSHHHH--HTTHHHHHHHTT--CEEES
T ss_pred cCCHHHHHHHHHHhCCCEEEE-CCcHHH--HHHHHHHHHhcC--CcEec
Confidence 345788899999999997775 655433 345667776666 56654
No 175
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=20.46 E-value=57 Score=30.87 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeec
Q 007819 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (588)
Q Consensus 164 ~~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKT 218 (588)
++++.+.+..++.++.+++.+|.+-|- +..-.-.++- ....+|||||-.
T Consensus 60 R~p~~l~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 108 (182)
T 1u11_A 60 RTPDRLADYARTAAERGLNVIIAGAGG-AAHLPGMCAA-----WTRLPVLGVPVE 108 (182)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHHH-----HCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCc-hhhhHHHHHh-----ccCCCEEEeeCC
Confidence 467888888888888889855544332 2222233332 236899999964
No 176
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.34 E-value=2.4e+02 Score=25.15 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEee
Q 007819 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVP 216 (588)
++++++++++.+.+. +-++++|--.|...|..++..+.+-| .+|..++
T Consensus 25 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~~~g--~~~~~~~ 72 (187)
T 3sho_A 25 QPEAIEAAVEAICRA--DHVIVVGMGFSAAVAVFLGHGLNSLG--IRTTVLT 72 (187)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCGGGHHHHHHHHHHHHHTT--CCEEEEC
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCchHHHHHHHHHHHHhcC--CCEEEec
Confidence 578899999999876 58999998889988988988887655 4555544
No 177
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.27 E-value=2.5e+02 Score=26.09 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=56.3
Q ss_pred CeEEEEEecCCCcccHH-HHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCC
Q 007819 86 AIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (588)
Q Consensus 86 ~~~IgIv~sGG~aPG~N-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~ 164 (588)
..+|.+.+.+|+.--+- +.++.+++ ..|++|+- + | ...+.+.+-..-..-+.++++-|-....
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~-----~~G~~v~~-L-G---------~~vp~~~l~~~~~~~~~d~v~lS~~~~~ 151 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLE-----SGGFTVYN-L-G---------VDIEPGKFVEAVKKYQPDIVGMSALLTT 151 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHH-----HTTCEEEE-C-C---------SSBCHHHHHHHHHHHCCSEEEEECCSGG
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHH-----HCCCEEEE-C-C---------CCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 45888889998874433 33333332 23677752 1 1 1245544433322234556766554434
Q ss_pred ChHHHHHHHHHHHHcCCc--EEEEecCcccH
Q 007819 165 TTEQVNAALTACKNLNLD--GLVIIGGVTSN 193 (588)
Q Consensus 165 ~~e~~~~i~~~l~~l~Id--~LviIGGddS~ 193 (588)
+...+.+.++.+++.+++ .-|++||....
T Consensus 152 ~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 152 TMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp GTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 567788999999998875 88999998764
No 178
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=20.10 E-value=6.1e+02 Score=27.37 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred hhhcCCccccccccCCCCChHHHHHHHHHHHHcCCcEEEEe------------------------------cCcccHHHH
Q 007819 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII------------------------------GGVTSNTDA 196 (588)
Q Consensus 147 ~~n~GGs~~lgS~R~k~~~~e~~~~i~~~l~~l~Id~LviI------------------------------GGddS~~~A 196 (588)
|..+ |+ ||-.+|.-+ +.+.+++.++.+..+++|.|-.= ||-=|....
T Consensus 157 f~~R-G~-mLD~aR~f~-~~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di 233 (512)
T 1jak_A 157 YAWR-SA-MLDVSRHFF-GVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEY 233 (512)
T ss_dssp CSEE-EE-EEECSSSCC-CHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHH
T ss_pred CCcc-ce-eeccCCCCC-CHHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHH
Confidence 3434 55 888899755 78899999999999999998632 344578889
Q ss_pred HHHHHHHHhcCCCceEE
Q 007819 197 AYLAETFAEAKCPTKVV 213 (588)
Q Consensus 197 ~~Lae~~~~~g~~i~VI 213 (588)
..|.+|++++| |.||
T Consensus 234 ~eiv~yA~~rg--I~VI 248 (512)
T 1jak_A 234 KEIVRYAASRH--LEVV 248 (512)
T ss_dssp HHHHHHHHHTT--CEEE
T ss_pred HHHHHHHHHcC--CEEE
Confidence 99999999988 5665
Done!