RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007819
(588 letters)
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 1219 bits (3156), Expect = 0.0
Identities = 513/610 (84%), Positives = 551/610 (90%), Gaps = 29/610 (4%)
Query: 8 PRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAH 67
PRELSGLQ+LRSLYQPELPPCLQGTTVRVE GD+TT ADPAD H+ISR+FPHTYGQPLAH
Sbjct: 1 PRELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAH 60
Query: 68 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG 127
FLRATAKVPDAQ+ITEHPA+RVG+VFCGRQSPGGHNV+WGL+DALK HNP S LLGFLGG
Sbjct: 61 FLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGG 120
Query: 128 SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187
+EGLFAQKTLE+T ++LSTYKNQGGYD+LGRTKDQIRTTEQVNAAL AC+ L LDGLVII
Sbjct: 121 TEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVII 180
Query: 188 GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247
GGVTSNTDAA LAETFAEAKC TKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN
Sbjct: 181 GGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 240
Query: 248 VCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICD 280
VCTDALSAEK VILGEEVAASKLTLFD+TKQICD
Sbjct: 241 VCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICD 300
Query: 281 AVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALF 340
AVQARAEQDKNHGVIL+PEGLIESIPEVYALL+EIH LL+QGV VDNISSQLSPWASALF
Sbjct: 301 AVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALF 360
Query: 341 EFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400
EFLPPFIKKQLLL PESDDSAQLSQIETEKLLA LVE EMNKR KEGTYKGKKFNAICHF
Sbjct: 361 EFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHF 420
Query: 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM 460
FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLK+P NKWRCGAAPIT+M
Sbjct: 421 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAM 480
Query: 461 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPG 520
M+VKRWS+ PGAS IG+PAI+PA VD++GKAYELLRQNA+ FL+DDLYRNPGP+QFDGPG
Sbjct: 481 MSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPG 540
Query: 521 ADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMS 580
ADAK +TLCVED+DYMGRIK+LQ+YLD+VRTIVKPGCSQEVLKAALS MASVT+VL+ MS
Sbjct: 541 ADAKPITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSSMASVTDVLTVMS 600
Query: 581 ASG--GQTTL 588
+ G T L
Sbjct: 601 SPSNRGLTPL 610
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 796 bits (2059), Expect = 0.0
Identities = 263/552 (47%), Positives = 340/552 (61%), Gaps = 46/552 (8%)
Query: 14 LQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATA 73
LQQ R Y P+LP LQG T + D TA AD + FP+TYG P+ F A
Sbjct: 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEA 60
Query: 74 KVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA 133
EH +++G++ G Q+PGGHNV+ GL+DALK NP S L GF+GG GL
Sbjct: 61 SP------DEHQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLD 114
Query: 134 QKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN 193
+E+TKE++ TY+N GG+D++G + +I T EQ ALT K L LDGLVIIGG SN
Sbjct: 115 NNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSN 174
Query: 194 TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL 253
T+AA LAE FA+ T+V+GVP T++GDLKNQF+ET+ GFDT CK+ S+LI N+C DAL
Sbjct: 175 TNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDAL 234
Query: 254 SAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARA 286
SA+K I+GEEVAA K+TL LT I D + RA
Sbjct: 235 SAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRA 294
Query: 287 EQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV----DNISSQLSPWASALFEF 342
+ KN GVIL+PEGLIE IPEV AL+KE+++LL Q V DN+ S+LSP + ALFE
Sbjct: 295 AKGKNFGVILIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFES 354
Query: 343 LPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFG 402
LP FI+ QLLL + + Q+SQIETEKLL LV+ E+NKR KEG YKG KF+A+ HFFG
Sbjct: 355 LPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKEGEYKG-KFSAVSHFFG 413
Query: 403 YQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMT 462
Y+ R + PS FD DY Y LG+ +LA GL GYM+T+ NL NPA +W G P+T MM
Sbjct: 414 YEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMN 473
Query: 463 VKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPG-- 520
++R +P I A VD+ GK ++ N ++ L+DLY PGP+Q+ GP
Sbjct: 474 MERRHGE------MKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEV 527
Query: 521 ADAKAVTLCVED 532
D +TL +E
Sbjct: 528 CDQPTLTLLLEQ 539
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 536 bits (1382), Expect = 0.0
Identities = 229/547 (41%), Positives = 319/547 (58%), Gaps = 56/547 (10%)
Query: 12 SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
S LQ R Y+P+LP LQ ++ D T AD ++ FP+TYG P F++
Sbjct: 4 SYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKG 63
Query: 72 TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL 131
+ ++VG++ G Q+PGGHNV+ GL+D LK NP S L GF+GG GL
Sbjct: 64 SESS--------SKPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGL 115
Query: 132 FAQKTLEVTKEILSTYKNQGGYDML--GRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
K +E+T+E++ Y+N GG+DM+ GRTK I T EQ A L K L LDGLVIIGG
Sbjct: 116 LNGKYIEITEEVIDEYRNTGGFDMIGSGRTK--IETEEQKEACLETVKKLKLDGLVIIGG 173
Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
SNT+AA LAE FA+ C T+V+GVP T++GDLKN+F+ET+ GFDT K S++I N+
Sbjct: 174 DDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNIS 233
Query: 250 TDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAV 282
DALSA+K ++ EEVA K++L D+ I +
Sbjct: 234 RDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVI 293
Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQ------GVPVDN----ISSQL 332
RA + KN+GVIL+PEGLIE IPE+ +L+KE++SLL + G+ + I S+L
Sbjct: 294 ADRAAKGKNYGVILIPEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKL 353
Query: 333 SPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGK 392
SP ++ LF+ LP I +QLLL + + Q+S+IETEKLL +V+ E+ K EG YKG
Sbjct: 354 SPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVKKELEKLKPEGKYKG- 412
Query: 393 KFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRC 452
F+AI HFFGY+ R + PS FD DY Y LG+ ++ G GYM+T+ NL +P +W
Sbjct: 413 PFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIA 472
Query: 453 GAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPG 512
GA P+T MM ++R +P I A VD+ G ++ + + L+D YR PG
Sbjct: 473 GAVPLTMMMNMER------RHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPG 526
Query: 513 PVQFDGP 519
P+Q+ GP
Sbjct: 527 PLQYFGP 533
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 421 bits (1083), Expect = e-141
Identities = 209/562 (37%), Positives = 298/562 (53%), Gaps = 57/562 (10%)
Query: 12 SGLQQLRSLYQPELPPCLQG--TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
S +QQ R Y P+LP L+G +++ G +T+ A D ++++ FP TYGQP F
Sbjct: 4 SLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAA--GDPDALAKLFPGTYGQPSVAF- 60
Query: 70 RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSE 129
VPD + P +++GIV G Q+PGGHNV+ GL+D LK STL GF GG
Sbjct: 61 -----VPDQDAPSSAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPA 115
Query: 130 GLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
G+ +E+ E + Y+N GG+DM+ + +I T +Q A K L+LD LV+IGG
Sbjct: 116 GILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGG 175
Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
SNT+AA LAE F T+V+GVP T++GDLKN+ +ET+ GFDT K+ S+LI NV
Sbjct: 176 DDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVM 235
Query: 250 TDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAV 282
DA S K I+ EEV+A K TL ++T + D +
Sbjct: 236 RDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVI 295
Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDN-----------ISSQ 331
RAE N GV+L+PEGLIE IPEV L+ E++ +L V N +
Sbjct: 296 CKRAELGYNFGVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLF 355
Query: 332 LSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 391
I++QL+L+ + + Q+S+IETEKLL +VE + K + G YKG
Sbjct: 356 DLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKG 415
Query: 392 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 451
+F HFFGY+ R + PS FD DY Y LG+ +L +G GY+++V NL P +W
Sbjct: 416 -QFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWT 474
Query: 452 CGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNP 511
G P+T +M ++R +P I A VD+ G ++ + L + Y P
Sbjct: 475 VGGVPLTMLMNMERRHGKF------KPVIKKALVDLEGAPFKKFASLREEWALKNRYIYP 528
Query: 512 GPVQFDGP--GADAKAVTLCVE 531
GPVQ+ GP G+D + TL +E
Sbjct: 529 GPVQYTGPSEGSDELSHTLLLE 550
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 409 bits (1052), Expect = e-136
Identities = 213/553 (38%), Positives = 308/553 (55%), Gaps = 52/553 (9%)
Query: 12 SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
S +Q R + LP L+G ++ G ++ A + I++ FP+ +GQP + +
Sbjct: 30 SEVQSSRIDHALPLPSVLKGP-FKIVDGPPSSAAGNPE--EIAKLFPNLFGQPSVMLVPS 86
Query: 72 TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL 131
A +++G+V G Q+PGGHNV+ G++D L+ H S L GF GG G+
Sbjct: 87 QADALS-----SDQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGI 141
Query: 132 FAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
K +E+T E + Y+NQGG+DM+ +D+I T EQ A L+LDGLV+IGG
Sbjct: 142 MKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDD 201
Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
SNT+A LAE F T+V+G P T++GDLK++ V T+ GFDT CK+ S++I NV D
Sbjct: 202 SNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMID 261
Query: 252 ALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQA 284
A S K I+GEEVAA KLTL ++T I D +
Sbjct: 262 ARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICK 321
Query: 285 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDN---ISSQLSPWASALFE 341
RAE N+GVIL+PEGLI+ IPEV L+ E++ +L V VD +L P + LF+
Sbjct: 322 RAELGYNYGVILIPEGLIDFIPEVQHLIAELNEILAHDV-VDEEGHWKKKLKPQSLQLFD 380
Query: 342 FLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFF 401
FLP I++QL+L+ + + Q+++IETEK+L +VE E+ KR +EG+YKG F HFF
Sbjct: 381 FLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQEGSYKG-HFKGQSHFF 439
Query: 402 GYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMM 461
GY+ R LP+ FD Y Y LG+ +L +G G +++V NL P +W G +TS+M
Sbjct: 440 GYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLM 499
Query: 462 TVKRWSQNPGASSIGRPAINPATVDMRG---KAYELLRQNATRFLLDDLYRNPGPVQFDG 518
V+R +P I A V++ G K + LR + L + Y +PGP+QF G
Sbjct: 500 DVER------RHGKFKPVIKKAMVELEGAPFKKFASLRD---EWALKNRYISPGPIQFSG 550
Query: 519 PGADAKAVTLCVE 531
PG+DA TL +E
Sbjct: 551 PGSDATNHTLKLE 563
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 344 bits (883), Expect = e-105
Identities = 190/584 (32%), Positives = 292/584 (50%), Gaps = 55/584 (9%)
Query: 3 SDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYG 62
S + S +Q R ++P LP L+ E + + +S FP T G
Sbjct: 23 SASSLHEGQSNMQMWRRRWEPCLPHILRSPLSIKEV-SAFEGMGKMERSDVSSYFPLTSG 81
Query: 63 QPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLL 122
L F A + + + PA R+G+V G Q+ GGHNV+ GL +KL N S L
Sbjct: 82 NSLVKF-EAISDGSSSW--KKFPARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLF 138
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLD 182
GFLGG EG+++++ E+T++ ++ NQGG++++ + +I T EQ+ A+L C+ L L
Sbjct: 139 GFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASLEICEKLKLH 198
Query: 183 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242
GLV+IGG SNT+AA LAE F T VVG P T++GDLKN+ +ET+ G+DT K S
Sbjct: 199 GLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYS 258
Query: 243 QLISNVCTDALS---------------------------AEKVILGEEVAASKLTLFDLT 275
+ I ++ + A +++GEE+ +L +
Sbjct: 259 EQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIV 318
Query: 276 KQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPW 335
+I + + R K HG++LLPEGLIE IPE L+KE++ +L + I LS
Sbjct: 319 DEIVEMILKRDSLGKKHGIVLLPEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQE 378
Query: 336 ASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFN 395
LF LP ++ QLLL+ + + Q+++I TE+LL H+ + ++ + K+ N
Sbjct: 379 MKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVKKDYILD----N 434
Query: 396 AICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAA 455
H+FGY+ R +LPS FD Y + LGH ++ +GYMA V L +W
Sbjct: 435 VKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGC 494
Query: 456 PITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQ 515
P+T MM ++ G S P I VD++G++Y Q + + L+D YRNPGP+Q
Sbjct: 495 PLTYMMNIE---LRKGKSV---PVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQ 548
Query: 516 FDGPGADAKAVTLC---------VEDRD-----YMGRIKELQKY 545
FDGP + + +EDRD + EL +
Sbjct: 549 FDGPNSGITNYMISPPRVEDLLRMEDRDENKMTHKLCGSELSQN 592
Score = 168 bits (426), Expect = 6e-44
Identities = 159/697 (22%), Positives = 270/697 (38%), Gaps = 134/697 (19%)
Query: 12 SGLQQLRSLYQPELPPCLQGTTVRV--EFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
S L Q R ++P L T + + S++ D D + I++ PH G+ + L
Sbjct: 587 SELSQNRCKDDLKIPKILLSTASKFNDDLIISSSCRD-LDAYIITKCLPHQTGRHNSKTL 645
Query: 70 --RATAKVPDAQIITE--HPAIRVGIVFCGR---------QSPGGHNVVWGLYDALKLHN 116
R I E VG +PG NV+ GL + L
Sbjct: 646 QLREEEYSSPFTEIRESSSSKSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLPSLK 705
Query: 117 PK---STLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAAL 173
+L F G + L T E + E N GG + ++ +E+ +
Sbjct: 706 QLIVFKSLSDFYEG-KALKVDLTSEGSLEFFENSLNSGGCIFPNGVEIKMNVSEKKYSNT 764
Query: 174 T----------------ACKNL-------------NLDGLVIIGGVTSNTDAAYLAE--- 201
T +CK L N+ + I+G + T A L+E
Sbjct: 765 TLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLI 824
Query: 202 --TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEK-- 257
+ K VV VPV L + +Q +ET +GFD++ K S L+ N+ TD+ SA K
Sbjct: 825 CMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYW 884
Query: 258 -------------------------VILGEEVAASKL----------TLFDLTKQICDAV 282
V++ E A SKL TL D+ +ICD +
Sbjct: 885 YFMKMIGDKTSNVALEVGIQTHPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDII 944
Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNI------------SS 330
R+ Q N G +L+ EGL + +VY +E + + + S
Sbjct: 945 CLRSNQGNNFGGLLVSEGLFD---QVYP-TREYRKIFSRFSTQNLCNASNSGNCEILGSE 1000
Query: 331 QLSPWASALFE-FLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389
LS + + E F F L +S ++ + TE +L+ LV+ E+ R +
Sbjct: 1001 SLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKI 1060
Query: 390 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL-NGYMATVTNLKNPAN 448
K N +C F Q R +PS FD + G + I+ + L GY+ + + + +
Sbjct: 1061 KN-GMNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQID 1119
Query: 449 KWRCGAAPITSMMT-------VKRWSQNPGASSIGRPAINPAT----------------V 485
W A PI+S+MT + N S + + +T V
Sbjct: 1120 SWNMYAIPISSLMTLNIEGDKIMDSRNNSNLSFESKKLLTESTLGNAGHQLEFICKLNSV 1179
Query: 486 DMR-GKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQK 544
+MR +++LL + ++ +D+ Y NPGP+Q+ + TL + Y +KE+ +
Sbjct: 1180 NMRNNPSFKLLMNHIEKWEVDNTYANPGPIQYFNLFKNLFNRTLFESEYVYTRNLKEMDQ 1239
Query: 545 YLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSA 581
L E++T+ + G +++L + + + ++ +S MS+
Sbjct: 1240 ILLEIKTLCQLGVEKDILNSTIQHLKAIQNSISIMSS 1276
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 318 bits (817), Expect = 1e-95
Identities = 180/554 (32%), Positives = 298/554 (53%), Gaps = 44/554 (7%)
Query: 10 ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
+LS LQ R YQP LP L +E + D + R + + P+ +
Sbjct: 105 DLSPLQYERIKYQPTLPKALASEYQILEENHGDDFINKKDYEEVKRFLKNLHNLPILNVK 164
Query: 70 RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSE 129
+ + +++GI+ G +PGGHNV+ G+YD K +N +S ++GFLGG +
Sbjct: 165 ETN----NHESFKGGNVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGID 220
Query: 130 GLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
GL+++ + +T +++ ++N GG++ML + ++R + + A L L+GLVIIGG
Sbjct: 221 GLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGG 280
Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
SN++AA ++E FAE + P ++G+P T++GDLK++ +E + GFDT K S++I N+C
Sbjct: 281 DGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLC 340
Query: 250 TD--------------ALSAEKVIL-------------GEEVAASKLTLFDLTKQICDAV 282
TD SA V+L GEEV L+L D+ I + +
Sbjct: 341 TDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTI 400
Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEF 342
R +KN+GVIL+PEGLIE +PE+ L+ E++ +L++G P D + S +++F
Sbjct: 401 LKRRSLNKNYGVILIPEGLIEFVPEMKILIGELNVILKEG-PFDASKLKHS---REVWDF 456
Query: 343 LPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFG 402
LP I+ QLL+ ES Q+ +I TE+L+ LVE E+ K L + + H+ G
Sbjct: 457 LPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESELAK-LND---NNLNIQFMAHYLG 512
Query: 403 YQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMT 462
Y+ R ++PS FDC+Y Y LG+ ++ GYM+ + NL++ W A P +M
Sbjct: 513 YEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572
Query: 463 VKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGAD 522
V R N G PA+ VD+ + +L++ + + L DLYR+PGP+QF+G ++
Sbjct: 573 VNR--DNTGKEF---PAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSN 627
Query: 523 AKAVTLCVEDRDYM 536
++ T+ + +D +
Sbjct: 628 SRCYTVKIPTKDNL 641
Score = 290 bits (743), Expect = 2e-85
Identities = 205/629 (32%), Positives = 307/629 (48%), Gaps = 92/629 (14%)
Query: 11 LSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPH-TYG-----QP 64
+S LQ R + ELP +V G + DP I ++PH +Y Q
Sbjct: 764 MSELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQE 823
Query: 65 LAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGF 124
+ H AT I E I++GIVF RQ+PG NV+ GLY LKL K + F
Sbjct: 824 IFHDKYATP------ISFE---IKIGIVFLSRQAPGAMNVLCGLYRRLKLL--KGVCIAF 872
Query: 125 LGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRTTEQVNAALTACKNLNLDG 183
G GL K + + + ++ + NQGG ++ G + + + E N NL L+G
Sbjct: 873 YG-LYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNG 931
Query: 184 LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243
LV+ G + T+AA LAE F E K PT VVG+P+T + +L ++ +ET VGFD+ KV +
Sbjct: 932 LVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYAS 991
Query: 244 LISNVCTDALSAEK---------------------------VILGEEVAASKLTLFDLTK 276
LI NV TDA+S K VI+ EE A+ TL+ + +
Sbjct: 992 LIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQ 1051
Query: 277 QICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLL----RQGVPVD------ 326
I D V ARAE KN+G +L+P+ L+ +P + LL EI +L +G V+
Sbjct: 1052 DIADVVCARAELGKNYGTVLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLV 1111
Query: 327 NIS---------------------------SQLSPWASALFEFLPPFIKKQLLLQPESD- 358
N+S S+L+PW+ AL + P FI K+LL D
Sbjct: 1112 NLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTFPQFIIKELL---HVDL 1168
Query: 359 DSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYA 418
S + ++ETE+LL +V+ E+++R ++G Y G F + HFFGYQ R SLPS+FDC A
Sbjct: 1169 RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSG-SFMGLTHFFGYQGRSSLPSEFDCKLA 1227
Query: 419 YVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNP----GASS 474
Y GH ++ +GL GY+ ++ L W+ A P S+M + Q AS
Sbjct: 1228 YSYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASK 1287
Query: 475 IGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRD 534
P I A VD+ GKAY L+ ++ ++D + NPGP+QF+G ++ L E +
Sbjct: 1288 GDLPVIPSAPVDLNGKAYRSLKIALQKWQMEDRFCNPGPIQFEGNASNYYNRILFEEQSE 1347
Query: 535 YMGRIKELQKYLDEVRTIVKPGCSQEVLK 563
Y ++ ++ Y + ++ + G S + LK
Sbjct: 1348 YFEMLRYVECYANILKDTCRFGVSADYLK 1376
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 159 bits (403), Expect = 8e-44
Identities = 89/405 (21%), Positives = 147/405 (36%), Gaps = 111/405 (27%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
++G++ G +PG + + G+ + + G G GL E+ E +S
Sbjct: 2 KIGVLTSGGDAPGMNAAIRGVVRSAIAEG--LEVYGIYEGYAGLVEGDIKELDWESVSDI 59
Query: 148 KNQGGYDMLGRTKDQI-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
N+GG ++G + + RT E A K +D LV+IGG S T A L E +
Sbjct: 60 INRGGT-IIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK 118
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALS------------ 254
V+G+P T++ D+K + +GFDT K + I + A S
Sbjct: 119 YQGFNVIGLPGTIDNDIKG--TDYTIGFDTALKTIVEAIDRIRDTASSHQRTFVVEVMGR 176
Query: 255 --------------AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 300
A+ + + EE AA + +++ D ++ R E+ K HG+++
Sbjct: 177 HCGDIALEAGLATGADIIFIPEEPAAD-----EWEEEMVDVIKKRRERGKRHGIVI---- 227
Query: 301 LIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDS 360
+ E +F+P
Sbjct: 228 ----VAE------------------------------GAIDFIP---------------- 237
Query: 361 AQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYV 420
+ TEKLLA LVE +RL F+ G+ RG P+ FD A
Sbjct: 238 ----KPITEKLLAKLVE----ERLG--------FDTRATVLGHVQRGGTPTAFDRILASR 281
Query: 421 LGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 465
LG +L G G + NL N+ + P+T + + +
Sbjct: 282 LGAEAVELLLEGTGGTPVGIQNL----NENQVVRHPLTEAVNMTK 322
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 152 bits (386), Expect = 3e-41
Identities = 89/405 (21%), Positives = 140/405 (34%), Gaps = 101/405 (24%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
++ I+ G +PG + V+ + + G G GL +T+E +
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVVRTAIKEG--LEVFGIYNGYLGLLEGDIKPLTREDVDDL 61
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207
N+GG + + +T E A K L +D LV+IGG S T AA LAE
Sbjct: 62 INRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG---- 117
Query: 208 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVA-- 265
VVGVP T++ D+ + +GFDT + + I N+ A S E++ + E V
Sbjct: 118 -GIPVVGVPKTIDNDIS--GTDFTIGFDTALETAVEAIDNLRDTASSHERIFIVE-VMGR 173
Query: 266 -ASKLTL-----------------FDLT-KQICDAVQARAEQD-KNHGVILLPEGLIESI 305
A L L DL +++ ++A+ E K H +I++ EG I+ I
Sbjct: 174 HAGWLALAAGLATGADIILIPEEPADLIIEELIAEIKAKREARGKKHAIIVVAEGAIDQI 233
Query: 306 PEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQ 365
++
Sbjct: 234 G----------------------------------------------------ENGAELL 241
Query: 366 IETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHIC 425
E+LLA F G+ RG PS FD A LG
Sbjct: 242 AAIEELLAL-----------------GDFETRVTVLGHIQRGGTPSAFDRVLASRLGAAA 284
Query: 426 YHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNP 470
+L G GYM + N K AP+ +M+++ ++
Sbjct: 285 VDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMVMSLEEPDRSI 329
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 57.0 bits (138), Expect = 8e-09
Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 31/235 (13%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
++GI+ G +PG + + + H + + G G +GL K + + +S
Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGFE--VYGIRRGYKGLINGKIEPLESKNVSGI 58
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207
++GG + + +T E A+ K L ++GLV+IGG S T A L E
Sbjct: 59 IHRGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGG--- 115
Query: 208 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVIL------- 260
V+G+P T++ D+ + +GFDT + + A S E+ +
Sbjct: 116 --IPVIGLPGTIDNDI--PGTDYTIGFDTALNTIIDAVDKIRDTATSHERAFVIEVMGRH 171
Query: 261 ------------GEEVAASKLTLFDLT-KQICDAVQARAEQDKNHGVILLPEGLI 302
G E+ + FD ++ ++ + E K H +I++ EG I
Sbjct: 172 AGDLALYAGIATGAEIII--IPEFDYDIDELIQRLKEQHEAGKKHSIIIVAEGNI 224
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 50.3 bits (121), Expect = 2e-06
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL---FAQKTLEVTKEI 143
++ IV CG PG ++V+ + L H +LG G +GL + +E+T E+
Sbjct: 81 VKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEV 140
Query: 144 LSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203
++ GG +LG ++ E V+ +N++ L +IGG + A+ +AE
Sbjct: 141 VADIHEFGG-TILGSSRGPQDPEEIVDTLE----RMNINILFVIGGDGTLRGASAIAEEI 195
Query: 204 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236
V+G+P T++ D+ F++ + GF+T
Sbjct: 196 ERRGLKISVIGIPKTIDNDIN--FIQKSFGFET 226
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 47.0 bits (112), Expect = 2e-05
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST 146
++ GIV CG PG + V+ L L + T+ G G +GL+ + +++ + + T
Sbjct: 88 VKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKT 147
Query: 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
GG +LG + R + ++ L +GG ++ A + +
Sbjct: 148 IHRLGG-TILGSS----RGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRR 202
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236
K VVG+P T++ D+ ++ + GF T
Sbjct: 203 KLNISVVGIPKTIDNDIP--IIDESFGFQT 230
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 46.3 bits (110), Expect = 3e-05
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 67 HFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNV----VWGLYDALKLHNPKSTLL 122
HF RA P ++ E +R IV CG PG + V V GL + +L
Sbjct: 71 HFRRAG---PRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTR----IL 123
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLD 182
G GG G +++ T+ +T ++++ +GG +LG ++ T++ V+ + ++ ++
Sbjct: 124 GIDGGYRGFYSRNTIPLTPKVVNDIHKRGG-TILGTSRGGHDTSKIVD----SIQDRGIN 178
Query: 183 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242
+ IIGG + A+ + E V G+P T++ D+ ++ + GFDT +
Sbjct: 179 QVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQ 236
Query: 243 QLISNVCTDALSAEKVI 259
+ I+ +A S E I
Sbjct: 237 RAINAAHVEAESVENGI 253
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 44.2 bits (105), Expect = 1e-04
Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 51/244 (20%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT-----LEVTKE 142
R+G++ G PG + V+ G+ + ++G G GL T LE +
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVVRR-AIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRG 59
Query: 143 ILSTYKNQGGYDMLGRT-----KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAA 197
IL +GG +LG + K + +++ A K L LD L+ IGG
Sbjct: 60 ILP----RGG-TILGSSRTNPFKYEEDGDDKIVAN---LKELGLDALIAIGG----DGTL 107
Query: 198 YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISNVCTDALSA 255
+A A+ P VVGVP T++ DL+ T+ GFDT ++ ++ + + T A S
Sbjct: 108 GIARRLADKGLP--VVGVPKTIDNDLE----ATDYTFGFDTAVEIATEALDRLHTTAESH 161
Query: 256 EKVILGEEVA--ASKLTL-----------------FDLTKQICDAVQARAEQDKNHGVIL 296
+V++ E + A + L FD+ +C+ V+ R + K +++
Sbjct: 162 HRVMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFDI-DSVCEKVRERFARGKRFAIVV 220
Query: 297 LPEG 300
+ EG
Sbjct: 221 VAEG 224
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 44.4 bits (105), Expect = 1e-04
Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 76 PDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ- 134
P +I E ++ IV CG PG ++V+ + L+++ K+ ++G G G F +
Sbjct: 43 PRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEIYGVKN-IVGIPFGYRGFFEKG 101
Query: 135 -KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN 193
+ ++++++ GG +LG ++ +T++ V++ + ++ L ++GG ++
Sbjct: 102 LSEMPLSRKVVQNIHLSGG-SLLGVSRGGAKTSDIVDSI----EARGINMLFVLGGNGTH 156
Query: 194 TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL 253
A + + K VVGVP T++ D+ ++ GFDT + + I++ +A
Sbjct: 157 AGANAIHNECRKRKMKVSVVGVPKTIDNDI--LLMDKTFGFDTAVEEAQRAINSAYIEAH 214
Query: 254 SA 255
SA
Sbjct: 215 SA 216
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 43.5 bits (104), Expect = 2e-04
Identities = 64/245 (26%), Positives = 99/245 (40%), Gaps = 70/245 (28%)
Query: 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILS 145
AIR +V G V G+YD G+ G EG + L+ +I+
Sbjct: 19 AIR-AVVRTAISE--GLEVY-GIYD------------GYAGLLEGDIVKLDLKSVSDII- 61
Query: 146 TYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 203
N+GG +LG R + + E A+ K L +D LV+IGG S A L
Sbjct: 62 ---NRGG-TILGSARFP-EFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRL---- 112
Query: 204 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL--------SA 255
E P V+G+P T++ D+ + +GFDT N +A+ S
Sbjct: 113 TEHGIP--VIGLPGTIDNDIA--GTDYTIGFDTAL--------NTAVEAIDRLRDTASSH 160
Query: 256 EKVILGEEVA---ASKLTL-----------------FDLTKQICDAVQARAEQDKNHGVI 295
E+V + EV A L L FD+ +++C ++ E+ K H +I
Sbjct: 161 ERVFI-VEVMGRHAGDLALHAGIAGGAEVILIPEVPFDI-EELCAKIKKGRERGKKHAII 218
Query: 296 LLPEG 300
++ EG
Sbjct: 219 VVAEG 223
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 39.6 bits (93), Expect = 0.002
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 31/206 (15%)
Query: 127 GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL---NLDG 183
G GL A ++ E +S +GG +G + + A +NL +D
Sbjct: 39 GYAGLVAGNIKQLDWESVSDIIQRGG-TFIGSARCPEFREREGRLK--AAENLKKHGIDA 95
Query: 184 LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243
LV+IGG S T A L VG+P T++ D+ + +GFDT +
Sbjct: 96 LVVIGGDGSYTGADLLTSEH-----GFNCVGLPGTIDNDICG--TDYTIGFDTALNTIVE 148
Query: 244 LISNVCTDALSAEKVILGEEV--AASKLTLF----------------DLTKQICDAVQAR 285
I + A S ++ + E + L L +++C+ ++
Sbjct: 149 AIDRIRDTASSHQRTFVVEVMGRHCGDLALVAGIAGGADYIFIPEAPFWEEELCNRLKRG 208
Query: 286 AEQDKNHGVILLPEGLIESIPEVYAL 311
E+ K H ++++ EG I+ I +
Sbjct: 209 RERGKRHNIVIVAEGAIDPITSEFVK 234
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 38.9 bits (91), Expect = 0.006
Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 36/250 (14%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
R+G++ G +PG + + G+ + G G GL A + + + +S
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGV--VRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDI 59
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
N+GG + + + E A+ K +D LV+IGG D +Y+ A E
Sbjct: 60 INRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGG-----DGSYMGAMRLTEH 114
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEV-- 264
P VG+P T++ D+ + +GFDT + I + + S +++ + E +
Sbjct: 115 GFP--CVGLPGTIDNDIPG--TDYTIGFDTALNTVVEAIDRIRDTSSSHQRISVVEVMGR 170
Query: 265 AASKLTL-----------------FDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPE 307
+ L FD +++ + ++A E+ K H ++++ EG+ +
Sbjct: 171 HCGDIALAAGIAGGAEFIVIPEAEFDR-EEVANRIKAGIERGKKHAIVVVAEGVY----D 225
Query: 308 VYALLKEIHS 317
V L KEI
Sbjct: 226 VDELAKEIEE 235
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 38.4 bits (90), Expect = 0.008
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 117 PKSTLLGFLGGSEGLFAQKTLEVTKEILSTY---KNQGGYDM------LGRTKDQIR--- 164
P+ ++ + G +GL ++E+T + + GG + L D ++
Sbjct: 34 PEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLTNVADCVKRGL 93
Query: 165 TTEQVNAALTACKNLNLDGLVI---IGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221
E N A + L DG+ I IGG +NT AA LA AE VVG+P T++
Sbjct: 94 VKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDN 153
Query: 222 D 222
D
Sbjct: 154 D 154
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 32.4 bits (74), Expect = 0.59
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 39/149 (26%)
Query: 122 LGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRT---------------KDQIR 164
+G ++GL A+ + +E+ + + GG +LG T +D R
Sbjct: 39 IGIRDATQGLMARPPQYIELDLDQVDDLLRMGG-TILGTTNKGDPFAFPMPDGSLRD--R 95
Query: 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224
+ E ++ +L LD L+ IGG S LA+ + +VG+P T++ D+
Sbjct: 96 SQEIIDGY----HSLGLDALIGIGGDGSLAILRRLAQ-----QGGINLVGIPKTIDNDVG 146
Query: 225 NQFVETNVGFDTICKVNSQLISNVCTDAL 253
E ++GFDT N+ T+AL
Sbjct: 147 --ATEVSIGFDT--------AVNIATEAL 165
>gnl|CDD|200574 cd10950, CE4_BsYlxY_like, Putative catalytic NodB homology domain
of uncharacterized protein YlxY from Bacillus subtilis
and its bacterial homologs. The Bacillus subtilis
genome contains six polysaccharide deacetylase gene
homologs: pdaA, pdaB (previously known as ybaN), yheN,
yjeA, yxkH and ylxY. This family is represented by
Bacillus subtilis putative polysaccharide deacetylase
BsYlxY, encoded by the ylxY gene, which is a member of
the carbohydrate esterase 4 (CE4) superfamily. Although
its biological function still remains unknown, BsYlxY
shows high sequence homology to the catalytic domain of
Bacillus subtilis pdaB gene encoding a putative
polysaccharide deacetylase (BsPdaB), which is essential
for the maintenance of spores after the late stage of
sporulation and is highly conserved in spore-forming
bacteria. However, disruption of the ylxY gene in B.
subtilis did not cause any sporulation defect. Moreover,
the Asp residue in the classical His-His-Asp
zinc-binding motif of CE4 esterases is mutated to a Val
residue in this family. Other catalytically relevant
residues of CE4 esterases are also not conserved, which
suggest that members of this family may be inactive.
Length = 188
Score = 31.5 bits (72), Expect = 0.75
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 28/91 (30%)
Query: 103 NVVWG------LYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQG----- 151
NV WG + L+ H+ K+T FL G +A+K ++ ++I G
Sbjct: 13 NVAWGEEYLPAMLTILEKHDVKATF--FLEGR---WAKKNPDLVRKI----AKDGHEIGN 63
Query: 152 -GY---DML----GRTKDQIRTTEQVNAALT 174
GY D + +++IR T ++ +T
Sbjct: 64 HGYSHPDPSQLSYEQNREEIRKTNEIIEEIT 94
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 31.9 bits (73), Expect = 0.96
Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 17/162 (10%)
Query: 65 LAHFLRATAKVPDAQII-TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLL 122
L FL + D +++ +E +R+ I+ G + G + A++ + T++
Sbjct: 367 LETFLFLSIPDDDKKLVPSEASRLRIAIIHVGAPAGGMNAAT---RSAVRYALARGHTVI 423
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTA--CKNLN 180
G GL E+T + + +GG LG T R+ + A +
Sbjct: 424 AIHNGFSGLARHDVRELTWSDVEGWVGEGG-SELG-TN---RSLPGDDLGTIAYYFQQHK 478
Query: 181 LDGLVIIGGVTSNTDAAYLA---ETFAEAKCPTKVVGVPVTL 219
+DGL+IIGG + L E + + P V +P T+
Sbjct: 479 IDGLIIIGGFEAFEALYQLDAAREKYPAFRIPM--VVIPATI 518
>gnl|CDD|219974 pfam08696, Dna2, DNA replication factor Dna2. Dna2 is a DNA
replication factor with single-stranded DNA-dependent
ATPase, ATP-dependent nuclease, ( 5'-flap endonuclease)
and helicase activities. It is required for Okazaki
fragment processing and is involved in DNA repair
pathways.
Length = 209
Score = 30.3 bits (69), Expect = 2.3
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 311 LLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 370
L K + L G D + ++ A+ + ++KK P S+ + E E
Sbjct: 123 LEKYLEELYLLGESQDEVREEVMEHLPAIEGWAEQYVKK----SPSSESISVSGTGEKET 178
Query: 371 L-LAHLVEVEMN 381
L ++ L+++E N
Sbjct: 179 LSISKLLDIEEN 190
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 28.8 bits (65), Expect = 2.9
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 484 TVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYM-GRIKEL 542
++ +A +L+ +N RF + ++ V +G +A L D ++ G L
Sbjct: 48 AIERNPEALDLIERNLRRFGVSNI------VIVEGDAPEAPEDLLPDPDAVFVGGSGGLL 101
Query: 543 QKYLDEVRTIVKPG 556
Q+ L+ V ++PG
Sbjct: 102 QEILEAVERRLRPG 115
>gnl|CDD|232852 TIGR00167, cbbA, ketose-bisphosphate aldolase. This model is under
revision. Proteins found by this model include
fructose-bisphosphate and tagatose-bisphosphate aldolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 288
Score = 30.0 bits (68), Expect = 3.0
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA--ETFAEAK---CPTKVVGVPVTLN 220
E +NA L A VII SN A Y+A + GVPV L+
Sbjct: 28 LETINAVLEAAAEEK--SPVIIQ--FSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALH 83
Query: 221 GD 222
D
Sbjct: 84 LD 85
>gnl|CDD|224205 COG1286, CvpA, Uncharacterized membrane protein, required for
colicin V production [General function prediction only].
Length = 182
Score = 29.6 bits (67), Expect = 3.4
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 300 GLIESIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWAS----ALFEFLPPFIKKQLLL 353
G + + + +L + + G D + S L P AL +LP +++
Sbjct: 106 GALRGVLILAIVLFFLAGI--TGFKDTPDWLQSSLYPLLLPPIEALQNYLPSSSVALIII 163
Query: 354 QPESDDSAQLSQIETEKL 371
S L + T+ L
Sbjct: 164 FHTPKLSNFLQNLWTQNL 181
>gnl|CDD|218696 pfam05692, Myco_haema, Mycoplasma haemagglutinin. This family
consists of several haemagglutinin sequences from
Mycoplasma synoviae and Mycoplasma gallisepticum. The
major plasma membrane proteins, pMGAs, of Mycoplasma
gallisepticum are cell adhesin (hemagglutinin)
molecules. It has been shown that the genetic
determinants that code for the haemagglutinins are
organised into a large family of genes and that only one
of these genes is predominately expressed in any given
strain.
Length = 437
Score = 30.0 bits (68), Expect = 3.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 146 TYKNQGGYDMLGRTKDQIRTTEQVNAALT-ACKNLNL-DGL--VIIGGVTSNTDAAYL 199
T ++ + LG T D TT ++ +T K L L GL ++I G T+N +A Y+
Sbjct: 372 TVLSKNNWTTLG-TFDTATTTTTNSSTVTNNKKTLTLKKGLNKIVISGGTNNGNAPYI 428
>gnl|CDD|225379 COG2823, OsmY, Predicted periplasmic or secreted lipoprotein
[General function prediction only].
Length = 196
Score = 29.3 bits (66), Expect = 4.2
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 154 DMLGRTKDQIRTTEQVNAALTACKNLN--------LDGLVIIGGVTSNTDAAYLAETFAE 205
+ GR+ D T +V AAL N+ +G V + G+ + + A AE A
Sbjct: 122 SLGGRSNDT-WITTKVKAALLGDDNVKSSNIKVETENGEVYLSGLVDSQEEAERAEEIAS 180
Query: 206 AKCPTKVVGV 215
KV GV
Sbjct: 181 -----KVSGV 185
>gnl|CDD|184849 PRK14847, PRK14847, hypothetical protein; Provisional.
Length = 333
Score = 28.8 bits (64), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 269 LTLFDLTKQICDAVQARAEQDKNHGVIL-LPEGLIESIPEVYA 310
L D +++CDAV A +I+ LP + S VYA
Sbjct: 183 LAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYA 225
>gnl|CDD|218013 pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase.
Zinc metallopeptidase zinc binding regions have been
predicted in some family members by a pattern match
(Prosite:PS00142).
Length = 222
Score = 28.6 bits (65), Expect = 8.0
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 309 YALLKEIHSLLRQG-VPVDNISSQLSPW---ASALFEFLPPFIK 348
YA L LR VPV NI S LS L P +
Sbjct: 107 YAPLV-----LRSALVPVVNIGSNLSWILFIIGLLLGLGPTLLL 145
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 28.4 bits (64), Expect = 9.0
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 485 VDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQK 544
V++ +A + L++N ++ + P+ D + V DR M K +
Sbjct: 130 VELNPEAVKYLKENIKLNKVEGVIS---PILGDV----RDVILEGVADRVIMNLPKSAHE 182
Query: 545 YLDEVRTIVKPG 556
+LD+ VK G
Sbjct: 183 FLDKALRAVKDG 194
>gnl|CDD|182652 PRK10693, PRK10693, response regulator of RpoS; Provisional.
Length = 303
Score = 28.4 bits (64), Expect = 9.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 14/48 (29%)
Query: 288 QDKNHGVI-----------LLPEGLIE---SIPEVYALLKEIHSLLRQ 321
+ ++GV+ LL E L +PE+ ALLK+++ LLRQ
Sbjct: 173 RAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQ 220
>gnl|CDD|132626 TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated
methylase. Members of this small clade are
methyltransferases of the pfam08241 family and are
observed within operons for the biosynthesis of
pseudaminic acid, a component of exopolysaccharide and
flagellin glycosyl modifications. Notable among these
genomes is Pseudomonas fluorescens PfO-1. Possibly one
of the two hydroxyl groups of pseudaminic acid, at
positions 4 and 8 is converted to a methoxy group by
this enzyme.
Length = 204
Score = 28.2 bits (63), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 480 INPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQ 515
INP D AY L + + R++L Y NP PV+
Sbjct: 118 INP---DNLPTAYRELYRCSNRYILIAEYYNPSPVE 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,703,780
Number of extensions: 2915765
Number of successful extensions: 2841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2785
Number of HSP's successfully gapped: 54
Length of query: 588
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 486
Effective length of database: 6,413,494
Effective search space: 3116958084
Effective search space used: 3116958084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)