RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007819
(588 letters)
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 573 bits (1479), Expect = 0.0
Identities = 178/562 (31%), Positives = 287/562 (51%), Gaps = 53/562 (9%)
Query: 10 ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
S +Q R Y P+LP L+ + T D ++ F +TYG P+ F
Sbjct: 2 NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFT 61
Query: 70 RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSE 129
+ + + A+ +GI+ G +PGGHNV+ G++DA+K NP S L GF GG
Sbjct: 62 EGESSL------SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115
Query: 130 GLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
GL +E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG
Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175
Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C
Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235
Query: 250 TDALS---------------------------AEKVILGEEVAASKLTLFDLTKQICDAV 282
DA+S I+ EEV A K TL ++ ++ +
Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295
Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV----------DNISSQL 332
R+ N GV+++PEGLIE IPEV +L+ E+ + + + ++L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355
Query: 333 SPWASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389
S + ++ LP FI+ +L +L+ + + +S++ TEKL +++ +N K G Y
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415
Query: 390 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 449
KG F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL
Sbjct: 416 KGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474
Query: 450 WRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYR 509
W G P+T +M ++ +P I A VD+ G+ ++ +N ++ L++LY
Sbjct: 475 WIAGGVPLTMLMNMEE------RYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYL 528
Query: 510 NPGPVQFDGPGADAKAVTLCVE 531
PGPVQ+ G +T ++
Sbjct: 529 YPGPVQYFGSSEIVDEITETLK 550
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.4 bits (192), Expect = 3e-15
Identities = 76/565 (13%), Positives = 165/565 (29%), Gaps = 160/565 (28%)
Query: 22 QPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLR-ATAKVPDAQI 80
QP + + + D+ +++SR Y + LR A ++ A+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN----QVFAKYNVSR--LQPYLK-----LRQALLELRPAKN 152
Query: 81 ITEHPAIRVGIVFCGRQS---------------PGGHNVVWGLYDALKL---HNPKSTLL 122
+ G++ G+ + W L L ++P++ L
Sbjct: 153 VLID-----GVLGSGKTWVALDVCLSYKVQCKMDFK--IFW-----LNLKNCNSPETVLE 200
Query: 123 -----------GFLGGSEGLFAQK-TLEVTKEILST------YKNQGGYDMLGRTKDQIR 164
+ S+ K + + L Y+N +L ++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVL----LNVQ 254
Query: 165 TTEQVNAALTACKNL-------NLDGLVIIGGVTSNTDAAYLAETFAEAKCPT---KVVG 214
+ NA +CK L D + T++ + + T + + K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 215 VPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDL 274
DL + + N + +S I+ E + T +D
Sbjct: 313 CRP---QDLPRE----------VLTTNPRRLS------------IIAESIRDGLAT-WDN 346
Query: 275 TKQI-CDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQ-L 332
K + CD + E N L P E + + S+ +I + L
Sbjct: 347 WKHVNCDKLTTIIESSLNV---LEPA-------EYRKMFDRL-SVFPPSA---HIPTILL 392
Query: 333 SP-WASALFE----FLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEG 387
S W + + K L+ + + + + I E + E +++ + +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD- 451
Query: 388 TYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN----- 442
Y K + + +P D Y Y HI +H+ M
Sbjct: 452 HYNIPK--------TFDSDDLIPPYLD-QYFY--SHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 443 ------LKNPANKWRCGAAPITSMMTVKRWSQ----NPGA-----SSIGRPAINPATVDM 487
+++ + W + + ++ +K + N ++I +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 488 RGKAYELLR---QNATRFLLDDLYR 509
K +LLR + ++ ++
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHK 585
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 74.0 bits (182), Expect = 4e-14
Identities = 58/317 (18%), Positives = 104/317 (32%), Gaps = 53/317 (16%)
Query: 19 SLYQPELPPC-----LQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATA 73
L LP + + R EF D T S + A
Sbjct: 28 DLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELA-- 85
Query: 74 KVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF- 132
++I +GIV CG PG ++V+ + ++GF G GL
Sbjct: 86 -AARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 133 --AQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGV 190
+Q +E+ + ++ + GG +LG + R + + + L ++ L +GG
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGG-TILGSS----RGPQDPKEMVDTLERLGVNILFTVGGD 199
Query: 191 TSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT-------------- 236
+ A +++ V GVP T++ DL F GF T
Sbjct: 200 GTQRGALVISQEAKRRGVDISVFGVPKTIDNDL--SFSHRTFGFQTAVEKAVQAIRAAYA 257
Query: 237 ----------ICKV---NSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQ 283
+ K+ +S I+ A + + L E +++ ++
Sbjct: 258 EAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENP------ISE-QEVMSLLE 310
Query: 284 ARAEQDKNHGVILLPEG 300
R VI++ EG
Sbjct: 311 RRFCH-SRSCVIIVAEG 326
Score = 28.5 bits (64), Expect = 7.4
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 402 GYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 442
Y R PS D + L + H AG G + + +
Sbjct: 379 SYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRH 419
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 66.7 bits (163), Expect = 7e-12
Identities = 63/391 (16%), Positives = 119/391 (30%), Gaps = 77/391 (19%)
Query: 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILS 145
+ G++ R+ G + +Y G +G E I +
Sbjct: 21 SAA-GVIEAARKQSG---KIGRIYAGRN---------GIIGALTEDLIDTGQESDAAISA 67
Query: 146 TYKNQGGYDMLGRT----KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201
+ G K + + + K ++ GG S +++
Sbjct: 68 L-RYTPS-GAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQ 125
Query: 202 TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD----ALSAEK 257
P + + VP T++ DL + GF ++ K + D + ++ K
Sbjct: 126 LSGTLGYPIQAIHVPKTVDNDLPI--TDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK 183
Query: 258 VILGEEVA--ASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 315
V + E + A + A + + + VIL PE + + L ++
Sbjct: 184 VFVLEVMGRHAGWIAAA--------GGLASSPEREIPVVILFPE-ISFDKQKF---LAKV 231
Query: 316 HSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE---SDDSAQLSQIETEKLL 372
S +++ ++ E DD LS
Sbjct: 232 DSCVKKF-------------------------GYCSVVVSEGVKGDDGKFLSDQGVRDAF 266
Query: 373 AHL----VEVEMNKRLKEGTYKGKKFNAICHFFGYQARGS--LPSKFDCDYAYVLGHICY 426
H V + +KEG G K++ Y R + + SK D + AY +G
Sbjct: 267 GHAQLGGVAPVVASMVKEGL--GLKYHWG--VADYLQRAARHIASKTDVEQAYAMGQAAV 322
Query: 427 HILAAGLNGYMATVTNLKNPANKWRCGAAPI 457
G N M T+ + +W+ G A +
Sbjct: 323 EFAVQGHNSVMPTIERISARPYQWKVGMAQL 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 88/495 (17%), Positives = 139/495 (28%), Gaps = 191/495 (38%)
Query: 5 FGIPRELSG-------LQQLRSL---YQPELPPCLQGTTVRVEFGDSTTTADPADTHSIS 54
FG G ++LR L Y + ++ + + D
Sbjct: 160 FG------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDA---E 206
Query: 55 RSFPHTYGQPLAHFLRATAKVPDAQIITEH----PAIRVG-----IVFC---GRQSPG-- 100
+ F G + +L + PD + P I V +V G +PG
Sbjct: 207 KVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGEL 263
Query: 101 --------GH--NVV----------W-GLYDALK--LHNPKSTLLGFLGGSEGL--FAQK 135
GH +V W + +++ + T+L F G +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-----TVL-FFIGVRCYEAYPNT 317
Query: 136 TLEVTKEILSTYKNQG--GYDML---GRTKDQIRTT-EQVNAALTACKNLNLDGLVIIGG 189
+L + S N+G ML T++Q++ + N+ L A K + + LV
Sbjct: 318 SLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLV---- 371
Query: 190 VTSNTDAAYLAETFAEAKCPTKVV-GVPVTLNGDLKNQF--VETNVGFDTICKVNSQLIS 246
N VV G P +L G L + G D ++
Sbjct: 372 ---NGAKNL-------------VVSGPPQSLYG-LNLTLRKAKAPSGLDQ-SRI------ 407
Query: 247 NVCTDALSAEKVILGEE---VAA---SKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 300
S K+ VA+ S L L A + + V +
Sbjct: 408 -----PFSERKLKFSNRFLPVASPFHSHL----LV----PASDLINKDLVKNNVSFNAKD 454
Query: 301 LIESIPEVY---------ALLKEI-HSLLRQ--GVPVDNISSQLSPWASALFEFLPPFIK 348
+ IP VY L I ++ +PV W + +F I
Sbjct: 455 I--QIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVK--------WETTT-QFKATHI- 501
Query: 349 KQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQAR-- 406
L P S L L R K+GT G R
Sbjct: 502 --LDFGP-GGASG----------LGVLT-----HRNKDGT--G-------------VRVI 528
Query: 407 --GSLPSKFDCDYAY 419
G+L D DY +
Sbjct: 529 VAGTLDINPDDDYGF 543
Score = 56.2 bits (135), Expect = 3e-08
Identities = 55/335 (16%), Positives = 91/335 (27%), Gaps = 134/335 (40%)
Query: 46 DPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVV 105
+ AD H F TYG + I+ +P + + I F G G +
Sbjct: 1647 NRADNH-----FKDTYGFSILD------------IVINNP-VNLTIHFGG---EKGKRIR 1685
Query: 106 WGLYDALKLH----------------NPKSTLLGFLGGSEGL-----FAQ---KTLEVTK 141
Y A+ N ST F +GL F Q +E
Sbjct: 1686 -ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSATQFTQPALTLMEKA- 1742
Query: 142 EILSTYKNQGGYDM--------LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN 193
K++G LG E AAL + V S
Sbjct: 1743 -AFEDLKSKGLIPADATFAGHSLG---------E--YAALASL-----------ADVMSI 1779
Query: 194 TDAAYL----AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
+ T A VP G +N G + +N ++
Sbjct: 1780 ESLVEVVFYRGMTMQVA--------VPRDELG-------RSNYG---MIAINPGRVAASF 1821
Query: 250 TDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNH---G---VILLPEGLIE 303
+ + + V+ E V T + + V N+ V G +
Sbjct: 1822 SQE-ALQYVV--ERVGKR-------TGWLVEIV--------NYNVENQQYVA---AGDLR 1860
Query: 304 SIPEVYALLKEIHSL------LRQGVPVDNISSQL 332
++ V +L I L++ + ++ + L
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 48.9 bits (116), Expect = 4e-06
Identities = 85/573 (14%), Positives = 160/573 (27%), Gaps = 211/573 (36%)
Query: 49 DTHSISRSFPHTYGQPLA---HFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVV 105
D H+++ L ++ A+I+ + P + S
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDK------KSNSA------ 144
Query: 106 WGLYDALKLHNPKSTLLGFLGG---SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162
L+ A+ + L+ GG ++ F +E+ Y+ Y +L D
Sbjct: 145 --LFRAVG--EGNAQLVAIFGGQGNTDDYF--------EELRDLYQT---YHVL--VGDL 187
Query: 163 IRTTEQVNAALTA----CKNLNLDGLVIIG---GVTSNTDAAYLAETFAEAKCPTKVVGV 215
I+ + + + L + + GL I+ ++ D YL P +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS------IP---ISC 238
Query: 216 PVTLNGDLKNQFVETNVGFDTICKVN----SQLISNVCTDALSAEKVILGEEVAASKLTL 271
P L G + Q + K+ +L S + ++ ++ +A + +
Sbjct: 239 P--LIGVI--QLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SW 289
Query: 272 FDLTKQICDAVQ------ARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV 325
+ A+ R + + LP ++E E +GVP
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYE--AYPNTSLPPSILEDSLEN-----------NEGVP- 335
Query: 326 DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLK 385
S LS I L+Q + + + + N L
Sbjct: 336 ---SPMLS-------------ISN-------------LTQEQVQDYVN-----KTNSHLP 361
Query: 386 EGTYKGKKFNAICHFFGYQARGSL---PSKFDCDYAYVL-GHICYHILAAGLNGYMATVT 441
G Q SL V+ G L G T+
Sbjct: 362 AGK---------------QVEISLVNGAKNL------VVSGP------PQSLYGLNLTLR 394
Query: 442 NLKNPAN-----------KWRCGAA--PIT-----SMMT-----VKRWSQNPG----ASS 474
K P+ K + P+ ++ + + A
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 475 IGRPAINPAT-VDMRGKAYELLRQNATRFLLDDLYRNPGPVQFD-------------GPG 520
I P + D+R L + + ++D + R PV+++ GPG
Sbjct: 455 IQIPVYDTFDGSDLRV-----LSGSISERIVDCIIRL--PVKWETTTQFKATHILDFGPG 507
Query: 521 ADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIV 553
+ L ++D G VR IV
Sbjct: 508 GASGLGVLTHRNKDGTG-----------VRVIV 529
Score = 41.6 bits (97), Expect = 8e-04
Identities = 58/323 (17%), Positives = 108/323 (33%), Gaps = 95/323 (29%)
Query: 261 GEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV---YALLKEIHS 317
G ++ + + + + RA D H + SI ++ + IH
Sbjct: 1632 GMDLYKT----SKAAQDVWN----RA--DN-H----FKDTYGFSILDIVINNPVNLTIHF 1676
Query: 318 LLRQGVPV-DNISS---QLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK--- 370
+G + +N S+ + E + I + + LS T+
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFTQP 1734
Query: 371 -LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH----IC 425
L +E + LK +G +P+ A GH
Sbjct: 1735 ALTL--MEKAAFEDLKS-------------------KGLIPAD-----ATFAGHSLGE-- 1766
Query: 426 YHILAAGLNGYMATVTNLKNPAN--KWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPA 483
Y LA+ +A V ++++ +R G +T + V R G S+ G AINP
Sbjct: 1767 YAALAS-----LADVMSIESLVEVVFYR-G---MTMQVAVPRDEL--GRSNYGMIAINPG 1815
Query: 484 TVDMRGKAYELLRQNATRFLLDDLYRNPG----PVQFDGPGA------DAKAVTLCVEDR 533
V Q A +++++ + + G V ++ D +A+
Sbjct: 1816 RVAAS------FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 534 DYMG--RIK--ELQK--YLDEVR 550
+++ +I ELQK L+EV
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVE 1892
Score = 38.1 bits (88), Expect = 0.011
Identities = 48/284 (16%), Positives = 69/284 (24%), Gaps = 109/284 (38%)
Query: 316 HSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE---SDDSAQLSQIETEKLL 372
H L + V + AS L E F K L +P + D + E L+
Sbjct: 13 HGSLEHVLLV---PTASFFIASQLQEQ---FNKI--LPEPTEGFAADDEPTTPAE---LV 61
Query: 373 AHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSK--------------FDCDYA 418
F GY + PSK F+ Y
Sbjct: 62 GK-------------------------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY- 95
Query: 419 YVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRP 478
L H LAA L T K IT+ + KR S++ R
Sbjct: 96 --LEGNDIHALAAKLLQENDT----TLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRA 148
Query: 479 AINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGR 538
G A L F G G +D
Sbjct: 149 V-------GEGNA--------------QLV-----AIFGGQGN--------TDD------ 168
Query: 539 IKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSAS 582
Y +E+R + + ++ + A L +
Sbjct: 169 ------YFEELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLD 204
Score = 35.8 bits (82), Expect = 0.043
Identities = 67/414 (16%), Positives = 135/414 (32%), Gaps = 114/414 (27%)
Query: 216 PVTLN-GDLKNQF-VETNVGFDTICKVNSQL------ISNVCTDALSAEKVILGEEVAAS 267
P+TL+ G L++ V T F + SQL I T+ +A+ +E +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFF-----IASQLQEQFNKILPEPTEGFAAD-----DE-PTT 56
Query: 268 KLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDN 327
+L + V + E K + + Y +IH+L + + +N
Sbjct: 57 PA---ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-LLQEN 112
Query: 328 ISSQLSPWA------SALFEFLPPFIKKQ--LLLQPESDDSAQL-----SQIETEKLLAH 374
++ + +A PF KK L + + +AQL Q T+
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 375 LVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSL----PSKFDCDYAYVLGHICYHILA 430
L ++ Y + ++ + + +L + D + + G +IL
Sbjct: 173 LRDL----------Y--QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LNILE 217
Query: 431 AGLNGYMATVTNLKNPANK----WRCGAAPITSM------------MTVKRWSQNP---- 470
L+NP+N + + PI S +T K P
Sbjct: 218 W-----------LENPSNTPDKDYLL-SIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 471 ----GASSIGR---PAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQ--FDGPGA 521
GA+ + A+ A D + +R+ A L R +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK-AITVLFFIGVR----CYEAYPNTSL 319
Query: 522 DAKAVTLCVEDRD----YM----G-RIKELQKYLDEVRTIVKPGCSQEVLKAAL 566
+ +E+ + M +++Q Y+++ + + G + ++ +L
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG---KQVEISL 370
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 50.9 bits (123), Expect = 5e-07
Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 66/229 (28%)
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 180
G G GL+ + +++ + +S N+GG LG R + R A+ K
Sbjct: 37 GIYDGYLGLYEDRMVQLDRYSVSDMINRGG-TFLGSARFPE-FRDENIRAVAIENLKKRG 94
Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
+D LV+IGG S A L E +G+P T++ D+ + + +GF T
Sbjct: 95 IDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDI--KGTDYTIGFFTAL-- 144
Query: 241 NSQLISNVCTDALS----------------------------------AEKVILGEEVAA 266
+ +A+ E V++ E
Sbjct: 145 ------STVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEV--- 195
Query: 267 SKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 315
F + + + ++A + K H ++ + E + +V L I
Sbjct: 196 ----EFSR-EDLVNEIKAGIAKGKKHAIVAITEHMC----DVDELAHFI 235
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 49.7 bits (120), Expect = 1e-06
Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 66/229 (28%)
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 180
G G GL + K ++ + ++GG L R + +T E + K L
Sbjct: 36 GIYNGYAGLISGKIEKLELGSVGDIIHRGG-TKLYTARCPE-FKTVEGREKGIANLKKLG 93
Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
++GLV+IGG S A L E VGVP T++ D+ + +GFDT
Sbjct: 94 IEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDI--PGTDFTIGFDTAL-- 143
Query: 241 NSQLISNVCTDALS----------------------------------AEKVILGEEVAA 266
N DA+ AE +++ E
Sbjct: 144 ------NTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALWAGLAGGAESILIPEA--- 194
Query: 267 SKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 315
+D+ +I ++ E+ K H +I++ EG+ K I
Sbjct: 195 ----DYDM-HEIIARLKRGHERGKKHSIIIVAEGVGSG----VEFGKRI 234
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 49.4 bits (119), Expect = 2e-06
Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 65/229 (28%)
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 180
G G GL A + E ++ N G L R + E A + K
Sbjct: 36 GIRYGFAGLVAGDIFPLESEDVAHLINVSG-TFLYSARYPE-FAEEEGQLAGIEQLKKHG 93
Query: 181 LDGLVIIGGVTSNTDAAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239
+D +V+IGG D +Y A +G+P T++ D+ + + +G+DT C
Sbjct: 94 IDAVVVIGG-----DGSYHGALQLTRHGFN--SIGLPGTIDNDI--PYTDATIGYDTAC- 143
Query: 240 VNSQLISNVCTDALS----------------------------------AEKVILGEEVA 265
DA+ A+ +++ E
Sbjct: 144 -------MTAMDAIDKIRDTASSHHRVFIVNVMGRNCGDIAMRVGVACGADAIVIPER-- 194
Query: 266 ASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKE 314
+D+ ++I + ++ E K+HG++++ EG + + + A LK+
Sbjct: 195 -----PYDV-EEIANRLKQAQESGKDHGLVVVAEG-VMTADQFMAELKK 236
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 45.2 bits (107), Expect = 6e-05
Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 25/179 (13%)
Query: 68 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHN------VVWGLYDALKLHNPKSTL 121
FL + + ++ E + + I+ G + N + L ++
Sbjct: 580 FLSVSKYDDGSYLVPESSRLNIAIIHVGAPTSA-LNPATRVATLNSLAKGHRV------- 631
Query: 122 LGFLGGSEGLFAQKTL-EVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKN 178
G GL + E+ + + N GG +G R+ ++ + +
Sbjct: 632 FAIRNGFAGLIRHGAVRELNWIDVEDWHNTGG-SEIGTNRSL----PSDDMGTVAYYFQQ 686
Query: 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDT 236
DGL+IIGG + T L A+ + +P T++ ++ E ++G DT
Sbjct: 687 YKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNV--PGTEYSLGSDT 743
Score = 37.9 bits (88), Expect = 0.011
Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 59/220 (26%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+ GG ++G R K+ R A + +D LV+ GG S T A + + E
Sbjct: 273 SIGG-TIIGTARCKE-FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPEL 330
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 247
+VG+ ++ D N T+ G + + +L+
Sbjct: 331 IKELLGEDKITKEQYETHRNLTIVGLVGSI--D--NDMCGTDSTIGAYSSLERIIELVDY 386
Query: 248 VCTDALS--------------------------AEKVILGEEVAASKLTLFDLTKQICDA 281
+ A S A+ + + E + + +
Sbjct: 387 IDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIPER----PPSESNWKDDLKKV 442
Query: 282 VQARAEQDKNHGVILLPEGLI--ESIPEVYALLKEIHSLL 319
E+ + +++ EG I + P +K++ +
Sbjct: 443 CLRHREKGRRKTTVIVAEGAIDDQLNPITSEEVKDVLVEI 482
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 43.9 bits (104), Expect = 1e-04
Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 25/179 (13%)
Query: 68 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHN------VVWGLYDALKLHNPKSTL 121
FL T K ++++ + +GIV G S N ++ L
Sbjct: 375 FLSTTVKDDGSELLPVSDRLNIGIVHVGAPSAA-LNAATRAATLYCLSHGH-------KP 426
Query: 122 LGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKN 178
+ G GL + E++ + + N GG +G R+ +E + +
Sbjct: 427 YAIMNGFSGLIQTGEVKELSWIDVENWHNLGG-SEIGTNRSV----ASEDLGTIAYYFQK 481
Query: 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDT 236
LDGL+I+GG L + + + +P T++ ++ E ++G DT
Sbjct: 482 NKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNV--PGTEYSLGVDT 538
Score = 36.9 bits (86), Expect = 0.020
Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 59/216 (27%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
++GG ++G R+ + R E A + +D LV+ GG S T A +
Sbjct: 68 SEGG-TLIGTARSME-FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSL 125
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETN--VGFDTICKVNSQLISN 247
+VG+ ++ D N T+ +G + + +++
Sbjct: 126 VDELVAEGRFTKEEVAPYKNLSIVGLVGSI--D--NDMSGTDSTIGAYSALERICEMVDY 181
Query: 248 VCTDALS--------------------------AEKVILGEEVAASKLTLFDLTKQICDA 281
+ A S A+ + + E + ++ +
Sbjct: 182 IDATAKSHSRAFVVEVMGRHCGWLALMAGIATGADYIFIPER----AVPHGKWQDELKEV 237
Query: 282 VQARAEQDKNHGVILLPEGLI--ESIPEVYALLKEI 315
Q + + + I++ EG + + P +K+
Sbjct: 238 CQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDA 273
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 43.5 bits (103), Expect = 2e-04
Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 42/211 (19%)
Query: 120 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACK 177
+L G EG + E + + QGG LG RT ++ EQ++A +
Sbjct: 432 RVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGG-SKLGSKRTL-PKKSFEQISANI---T 486
Query: 178 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDT 236
N+ GLVIIGG + T L E + V +P T++ ++ + +VG DT
Sbjct: 487 KFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNV--PGSDFSVGADT 544
Query: 237 ------------------------ICKV---NSQLISNVCTDALSAEKVILGEEVAASKL 269
I + ++ + A A+ + EE
Sbjct: 545 ALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEE----PF 600
Query: 270 TLFDLTKQICDAVQARAEQDKNHGVILLPEG 300
T+ DL + + + + + G++L E
Sbjct: 601 TIRDLQANV-EHLVQKMKTTVKRGLVLRNEK 630
Score = 35.0 bits (81), Expect = 0.084
Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 58/202 (28%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF--- 203
GG ++G R KD R E A + L +IGG S T A +
Sbjct: 78 QLGG-TVIGSARCKD-FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDL 135
Query: 204 --------------AEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 247
A +VG+ ++ D N F T++ G D+ ++++
Sbjct: 136 LSDLQKAGKITAEEATRSSYLNIVGLVGSI--D--NDFCGTDMTIGTDSALHRITEIVDA 191
Query: 248 VCTDALS--------------------------AEKVILGEEVAASKLTLFDLTKQICDA 281
+ T A S A+ V + E + +C
Sbjct: 192 ITTTAQSHQRTFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWEDHLCRR 246
Query: 282 VQARAEQDKNHGVILLPEGLIE 303
+ + +I++ EG I+
Sbjct: 247 LSETRTRGSRLNIIIVAEGAID 268
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 41.5 bits (98), Expect = 9e-04
Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 38/195 (19%)
Query: 59 HTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPG---------------GHN 103
+ + L +F+ + + + + +++ IV G + G GH
Sbjct: 366 TEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMSQGHR 425
Query: 104 VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK-TLEVTKEILSTYKNQGGYDMLGRTKDQ 162
+Y+ G+ G + + + ++GG +G T
Sbjct: 426 PY-AIYN------------GWSGLARHESVRSLNWKDMLGWQ----SRGG-SEIG-TNRV 466
Query: 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNG 221
+ + DGL+I+GG + L +V +P TL+
Sbjct: 467 TPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSN 526
Query: 222 DLKNQFVETNVGFDT 236
++ E ++G DT
Sbjct: 527 NV--PGTEYSLGSDT 539
Score = 34.5 bits (80), Expect = 0.11
Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 57/199 (28%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+GG +G R + + E +D L++ GG S T A +
Sbjct: 67 AEGG-TNIGTARCME-FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 247
+ G ++ D N T+ G + + I
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSI--D--NDMSTTDATIGAYSALDRICKAIDY 180
Query: 248 VCTDALS--------------------------AEKVILGEEVAASKLTLFDLTKQICDA 281
V A S A+ + + E+ T + Q+CD
Sbjct: 181 VEATANSHSRAFVVEVMGRNCGWLALLAGIATSADYIFIPEK----PATSSEWQDQMCDI 236
Query: 282 VQARAEQDKNHGVILLPEG 300
V + K ++++ EG
Sbjct: 237 VSKHRSRGKRTTIVVVAEG 255
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 37.8 bits (88), Expect = 0.010
Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 53/190 (27%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+ GG +G RT + + DGL+++GG + L
Sbjct: 633 SLGG-SEIGTNRTLPNDADIGMIAYFF---EKYGFDGLILVGGFEAFISLHQLERARINY 688
Query: 207 KCP-TKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALS----------- 254
+V +P T++ ++ E ++G DT N +
Sbjct: 689 PSLRIPLVLIPATISNNV--PGTEYSLGSDTCL--------NSFMEYCDVIKQSAAATRN 738
Query: 255 ------------------------AEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDK 290
A+ + EE + D+ + ++ + K
Sbjct: 739 RVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGISLAQLEMDI-NSLKESFANDQGKTK 797
Query: 291 NHGVILLPEG 300
+ +IL E
Sbjct: 798 SGRLILKSEN 807
Score = 35.5 bits (82), Expect = 0.062
Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 53/197 (26%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+GG +G R K+ R A ++ +D L++ GG S T A +
Sbjct: 245 VEGG-TNIGTARCKE-FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSL 302
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
+ G +++ D+ + +G + + I +
Sbjct: 303 IEELLQTEQISQQQFNTHQNLNICGAVGSIDNDM--SSTDATIGAFSSLDRICRAIDYID 360
Query: 250 TDALS--------------------------AEKVILGEEVAASKLTLFDLTKQICDAVQ 283
A S A+ +++ E+ + + Q+CD V
Sbjct: 361 ATANSHSRAFIVEVMGRHCGWLGLLAGLATSADYILIPEK----PASSREWQDQMCDIVG 416
Query: 284 ARAEQDKNHGVILLPEG 300
+ K ++++ EG
Sbjct: 417 KHRARGKRKTIVIVAEG 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.029
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 10 ELSGLQQLRS---LYQPELPPCL--QGTTVRVE 37
E L++L++ LY + P L + T +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT---ME 47
Score = 29.5 bits (65), Expect = 1.8
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 347 IKK-QLLLQPESDDSA-QL---SQIE 367
+KK Q L+ +DDSA L + +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 3.5
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 108 LYDALKLHNPKSTLLGFLGGSEGLFAQKTLE 138
L +LKL+ S + L + T+E
Sbjct: 25 LQASLKLYADDS--------APALAIKATME 47
Score = 28.4 bits (62), Expect = 3.8
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 539 IKELQKYLDEVRTIVKPGCSQEVLKAALSVMASV 572
+K+LQ L + + AL++ A++
Sbjct: 22 LKKLQASL----KLYADDSA-----PALAIKATM 46
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 29.9 bits (67), Expect = 2.1
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 485 VDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVE-DRDYMGRIKELQ 543
++ ++ L +N ++D + D + DR MG +
Sbjct: 154 IEKDPYTFKFLVENIHLNKVED--------RMSAYNMDNRDFPGENIADRILMGYVVRTH 205
Query: 544 KYLDEVRTIVKPGC 557
+++ + +I K G
Sbjct: 206 EFIPKALSIAKDGA 219
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 28.9 bits (64), Expect = 3.1
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 39 GDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCG 95
G + A+ H T + + R I ++HP R+G+ CG
Sbjct: 98 GWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCG 154
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium
bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Length = 899
Score = 29.2 bits (64), Expect = 4.5
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 490 KAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAV 526
Y+L+ + +L+ P Q DG + V
Sbjct: 740 TTYQLVELQLKNAMYANLFDYHAPFQIDGNFGNTSGV 776
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta,
beta alpha domain; 1.90A {Geobacillus kaustophilus}
Length = 161
Score = 27.9 bits (63), Expect = 5.2
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
L G++I G + D+A + A CP K V + G
Sbjct: 78 QIACERGLAGVIIHGCI---RDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGG 133
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Thermus thermophilus} SCOP:
c.8.7.1
Length = 164
Score = 27.9 bits (63), Expect = 5.4
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
G+V+ G V D L E A A P K V VP+ + G
Sbjct: 79 RRAWEKGWAGVVVHGAV---RDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLG 134
>2lcu_A BC28.1; alpha-barrel, protein binding; NMR {Babesia canis}
Length = 223
Score = 28.4 bits (62), Expect = 5.9
Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 336 ASALFEFLPPFIKKQLLLQPESDDSAQL-SQIETEKLLAHLVEVEMNKRLKEGTYKGKKF 394
A ++ L ++ L+ + D+ ++ + + K++ ++ + N +K +
Sbjct: 105 AISMLYVLSITHRELSSLKNKIDEWKKVKASEDGTKVIQNIKDDRTNTWFVAHGFKVAEL 164
Query: 395 N 395
N
Sbjct: 165 N 165
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 28.5 bits (64), Expect = 6.0
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA-------------ETFAEAKCPTKV 212
T+ +NA L A K +N VII SN A + A K
Sbjct: 42 TDSINAVLEAAKKVNSP--VIIQ--FSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKA 97
Query: 213 VGVPVTLNGD 222
GVPV L+ D
Sbjct: 98 YGVPVILHTD 107
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 28.0 bits (63), Expect = 6.0
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
++ GL++ G V DAA L A P K V +TL G
Sbjct: 109 ELARSTGWTGLIVHGAV---RDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGG 164
>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
PSI-biology, midwest C structural genomics, MCSG, lipid
BIND protein; 2.25A {Shewanella oneidensis}
Length = 572
Score = 28.8 bits (64), Expect = 6.6
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 9/87 (10%)
Query: 479 AINPATVDMRGK-AYELLRQNATRFLLD-----DLYRNPGPVQFDG--PGADAKAVTLCV 530
++ Y L+ + D +P G +
Sbjct: 80 QFELKSLTSNETIDYHLIDNLLSSMAWDITRFKSWQWDPSSYNVAGGFAQIINENFAPLD 139
Query: 531 ED-RDYMGRIKELQKYLDEVRTIVKPG 556
+ R + R++ + Y R +
Sbjct: 140 DRLRSVLARMENIPAYYAAARGNISQP 166
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 27.9 bits (63), Expect = 6.7
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
+G+V+ G + D +A+T A A P K + V VT G
Sbjct: 80 EKAAKNGWEGIVVYGCI---RDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGG 135
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 28.3 bits (63), Expect = 7.0
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 485 VDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQK 544
+D+ A ELL++N L+ P+ +D + V + +R M K K
Sbjct: 222 IDINPHAIELLKKNIKLNKLEHKII---PIL-----SDVREVDVK-GNRVIMNLPKFAHK 272
Query: 545 YLDEVRTIVKPGC 557
++D+ IV+ G
Sbjct: 273 FIDKALDIVEEGG 285
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics,
unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Length = 174
Score = 27.6 bits (62), Expect = 7.5
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTK-------VVGVPVTLNG 221
+ +G++I G V D ++E A P K V V +T+
Sbjct: 83 ILAIKNDWEGVIIYGAV---RDVVAMSEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQN 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,903,869
Number of extensions: 550992
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1259
Number of HSP's successfully gapped: 49
Length of query: 588
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 489
Effective length of database: 3,937,614
Effective search space: 1925493246
Effective search space used: 1925493246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)