RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007819
(588 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 459 bits (1182), Expect = e-157
Identities = 180/558 (32%), Positives = 286/558 (51%), Gaps = 55/558 (9%)
Query: 12 SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
S +Q R Y P+LP L+ + T D ++ F +TYG P+ F
Sbjct: 1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEG 60
Query: 72 TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL 131
+ + A+ +GI+ G +PGGHNV+ G++DA+K NP S L GF GG GL
Sbjct: 61 ESSLS------FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGL 114
Query: 132 FAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
+E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG
Sbjct: 115 LENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 174
Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C D
Sbjct: 175 SNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRD 234
Query: 252 ALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQA 284
A+S +K I+ EEV A K TL ++ ++ +
Sbjct: 235 AMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILK 294
Query: 285 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSP 334
R+ N GV+++PEGLIE IPEV +L+ E+ + + + ++LS
Sbjct: 295 RSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSD 354
Query: 335 WASALFEFLPPFIKKQLLLQPESDDS---AQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 391
+ ++ LP FI+ +L+ D +S++ TEKL +++ +N K G YKG
Sbjct: 355 YMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG 414
Query: 392 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 451
F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL W
Sbjct: 415 -SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWI 473
Query: 452 CGAAPITSMMTV-KRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRN 510
G P+T +M + +R+ + +P I A VD+ G+ ++ +N ++ L++LY
Sbjct: 474 AGGVPLTMLMNMEERYGEK-------KPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLY 526
Query: 511 PGPVQFDGPGADAKAVTL 528
PGPVQ+ G +T
Sbjct: 527 PGPVQYFGSSEIVDEITE 544
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 109 bits (272), Expect = 8e-27
Identities = 65/319 (20%), Positives = 115/319 (36%), Gaps = 40/319 (12%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + + G G GL A ++ +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE--VYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207
++GG + + +T E + K + GLV+IGG S A L +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKL------TE 114
Query: 208 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVIL------- 260
VGVP T++ D+ + +GFDT I + A S E+ +
Sbjct: 115 HGFPCVGVPGTIDNDIP--GTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGRH 172
Query: 261 -GEEVAASKL-----------TLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV 308
G+ S L +D+ I ++ E+ K H +I++ EG+ +
Sbjct: 173 AGDIALWSGLAGGAETILIPEADYDMNDVIAR-LKRGHERGKKHSIIIVAEGVGSGVDFG 231
Query: 309 YALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKK---QLLLQPESDDSAQLSQ 365
+ + R V Q +A L + +LLL+ +
Sbjct: 232 RQIQEATGFETRVTVLGH---VQRGGSPTAFDRVLASRLGARAVELLLE---GKGGRCVG 285
Query: 366 IETEKLLAH-LVEVEMNKR 383
I+ +L+ H + E NK
Sbjct: 286 IQNNQLVDHDIAEALANKH 304
Score = 33.5 bits (76), Expect = 0.055
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 442
G+ RG P+ FD A LG +L G G + N
Sbjct: 247 LGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQN 288
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 103 bits (258), Expect = 5e-25
Identities = 47/256 (18%), Positives = 100/256 (39%), Gaps = 30/256 (11%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
++G++ G +PG + + G+ + + ++G G GL+ + +++ + +S
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALTEGLE--VMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207
N+GG + + R A+ K +D LV+IGG S A L E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------ 115
Query: 208 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAAS 267
+G+P T++ D+K + +GF T + I + + S +++ + E +
Sbjct: 116 MGFPCIGLPGTIDNDIKG--TDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRY 173
Query: 268 KLTL-------------------FDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV 308
L F + + + ++A + K H ++ + E + +
Sbjct: 174 CGDLTLAAAIAGGCEFVVVPEVEFS-REDLVNEIKAGIAKGKKHAIVAITEHMCDVDELA 232
Query: 309 YALLKEIHSLLRQGVP 324
+ + KE R V
Sbjct: 233 HFIEKETGRETRATVL 248
Score = 38.9 bits (90), Expect = 0.001
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 379 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMA 438
E+ +++ T G+ RG P +D A +G +L AG G
Sbjct: 230 ELAHFIEKET----GRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCV 285
Query: 439 TVTN 442
+ N
Sbjct: 286 GIQN 289
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 34.3 bits (78), Expect = 0.034
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 482 PATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA-DAKAVTLCVEDRDYM-GRI 539
+ +DM + + LL GPG D + + + + R+
Sbjct: 263 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPR--IPSSEEIADRV 320
Query: 540 KELQKYLDEVRTIVKPGCS-----QEVLKAALSVMASVTEVLSA 578
++ L++ V P C +K AL M +++ +
Sbjct: 321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRS 364
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 30.2 bits (67), Expect = 0.76
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 151 GGYDMLGRTKDQIRT------TEQVNAALTACKNL----------NLDGLVIIGGVTSNT 194
G + LGR +Q++ E+V + L + + + + S
Sbjct: 405 GNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK 464
Query: 195 DA------AYLAETFAEAKCPTKVVGV---PVTLNG 221
+ +E P+ + + P+T NG
Sbjct: 465 HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNG 500
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID
subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 27.1 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 306 PEVYALLKE-IHSLLRQGVPVDNISSQL-SPWASALFEFLPPFIKKQL-LLQPESDDSAQ 362
E A +KE + +LL + ++ +S+L S+ +L PF+K+ L L+ + DSA
Sbjct: 32 TETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAA 91
Query: 363 LSQ 365
Q
Sbjct: 92 FIQ 94
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 28.1 bits (62), Expect = 3.7
Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 53/215 (24%)
Query: 37 EFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGR 96
E G T P + +P + D + G +
Sbjct: 413 ETGGFMITPLPGAIELK----AGSATRPFFG---VQPALVDNEG-HPQEGATEGNLVITD 464
Query: 97 QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDML 156
PG ++G + + + + ++ + + + G Y +
Sbjct: 465 SWPGQARTLFG--------DHERFEQTYFSTFKNMY--FSGD-----GARRDEDGYYWIT 509
Query: 157 GRTKDQIRT------TEQVNAALTACKNL----------NLDGLVIIGGVTSNTDA---- 196
GR D + T ++ +AL A + + G I VT N
Sbjct: 510 GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 569
Query: 197 -------AYLAETFAEAKCPTKVVGV---PVTLNG 221
++ + P + P T +G
Sbjct: 570 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 604
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium thermocellum [TaxId: 1515]}
Length = 642
Score = 27.9 bits (62), Expect = 4.6
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 432 GLNGYMATVTNLKNPANKWRCGAAP------ITSMMTVKRWSQNPGASSIGRPAINPATV 485
G NG++ T ++ A +WR AP I ++ +W A G+ + + V
Sbjct: 203 GPNGFLDLFTKDRSYAKQWRYTNAPDAEGRAIQAVYWANKW-----AKEQGKGSAVASVV 257
Query: 486 DMRGKAYELLR 496
K + LR
Sbjct: 258 SKAAKMGDFLR 268
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 27.1 bits (59), Expect = 6.8
Identities = 23/139 (16%), Positives = 36/139 (25%), Gaps = 22/139 (15%)
Query: 28 CLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAI 87
+ T + E G T + P + P A V D E
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMK---PGSASFPFFGI---DAVVLDPNTGEELNTS 444
Query: 88 RVGIVFCGRQS-PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST 146
V + + P +W N L +L G + T + +
Sbjct: 445 HAEGVLAVKAAWPSFARTIWK--------NHDRYLDTYLNPYPGYY--FTGD-----GAA 489
Query: 147 YKNQGGYDMLGRTKDQIRT 165
G +LGR D +
Sbjct: 490 KDKDGYIWILGRVDDVVNV 508
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 26.8 bits (59), Expect = 7.6
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 323 VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNK 382
+P+D + S L P + L L + K QP L+ + + +
Sbjct: 7 IPIDQLPS-LPPLPTDLRTRLDAALAKPAAQQPTWPADQALAMRTVLESVPPVTVPSEIV 65
Query: 383 RLKEG---TYKGKKF 394
RL+E KG+ F
Sbjct: 66 RLQEQLAQVAKGEAF 80
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
{Bordetella bronchiseptica [TaxId: 518]}
Length = 191
Score = 26.2 bits (58), Expect = 9.2
Identities = 7/60 (11%), Positives = 17/60 (28%)
Query: 199 LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKV 258
E P K+ + ++ + F + L++ D L + +
Sbjct: 16 YHENGPAPAQPLKLAASCAVIRNPYAGRYEPDLMPFMAELRSLGTLLATELVDTLGKDNI 75
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 26.0 bits (57), Expect = 9.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 410 PSKFDCDYAYVLGHICYHILAAGL 433
+K D AY + ++ GL
Sbjct: 36 YTKVDRSAAYAARWVAKSLVKGGL 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,132,541
Number of extensions: 100771
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 14
Length of query: 588
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 498
Effective length of database: 1,171,896
Effective search space: 583604208
Effective search space used: 583604208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)