Query 007820
Match_columns 588
No_of_seqs 298 out of 1751
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 15:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00079 NADP-specific glutama 100.0 9E-130 2E-134 1046.7 45.7 399 190-588 11-410 (454)
2 PRK14030 glutamate dehydrogena 100.0 6E-125 1E-129 1010.0 44.2 396 193-588 3-401 (445)
3 PRK14031 glutamate dehydrogena 100.0 1E-121 2E-126 985.6 44.5 394 193-587 3-399 (444)
4 COG0334 GdhA Glutamate dehydro 100.0 5E-119 1E-123 947.9 36.8 367 207-587 1-368 (411)
5 PRK09414 glutamate dehydrogena 100.0 3E-116 7E-121 945.0 43.8 392 192-587 6-400 (445)
6 PLN02477 glutamate dehydrogena 100.0 4E-113 8E-118 914.3 40.8 366 209-587 2-367 (410)
7 KOG2250 Glutamate/leucine/phen 100.0 6E-112 1E-116 899.9 34.9 413 157-587 1-429 (514)
8 PTZ00324 glutamate dehydrogena 100.0 6E-70 1.3E-74 621.9 31.8 337 233-587 464-881 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 4.6E-63 1E-67 500.0 22.2 209 379-587 1-210 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 1.1E-53 2.4E-58 430.0 9.7 199 386-587 1-203 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 3.6E-52 7.8E-57 414.9 19.1 192 386-587 1-192 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 4.5E-51 9.8E-56 404.6 18.3 183 394-587 1-183 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 4.6E-45 9.9E-50 336.6 12.8 131 241-371 1-131 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 9E-36 2E-40 291.4 18.0 162 392-587 2-166 (200)
15 smart00839 ELFV_dehydrog Gluta 99.9 2.7E-26 5.8E-31 203.4 7.6 83 499-587 3-85 (102)
16 COG2902 NAD-specific glutamate 99.9 2.8E-21 6.1E-26 224.7 26.8 294 261-568 785-1159(1592)
17 PF05088 Bac_GDH: Bacterial NA 99.8 6.8E-19 1.5E-23 211.5 22.0 291 261-568 723-1097(1528)
18 PRK06392 homoserine dehydrogen 99.2 5.1E-11 1.1E-15 125.6 7.8 84 417-509 1-92 (326)
19 PRK08374 homoserine dehydrogen 99.1 2E-10 4.4E-15 121.3 6.9 128 417-551 3-145 (336)
20 cd05191 NAD_bind_amino_acid_DH 98.6 2.6E-07 5.7E-12 78.9 10.5 55 394-448 1-55 (86)
21 PRK06270 homoserine dehydrogen 98.6 1.8E-07 4E-12 99.1 9.8 128 417-551 3-148 (341)
22 PRK06813 homoserine dehydrogen 98.2 2.8E-06 6E-11 90.7 7.4 93 417-519 3-107 (346)
23 PLN02700 homoserine dehydrogen 98.1 7.3E-06 1.6E-10 88.4 7.8 63 417-479 4-79 (377)
24 cd01065 NAD_bind_Shikimate_DH 97.8 0.00075 1.6E-08 62.2 14.3 132 401-554 4-139 (155)
25 PRK09436 thrA bifunctional asp 97.7 0.0002 4.3E-09 84.4 11.9 140 402-553 451-606 (819)
26 TIGR02853 spore_dpaA dipicolin 97.7 0.00047 1E-08 71.9 12.4 132 392-556 130-269 (287)
27 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00021 4.5E-09 69.1 9.1 122 397-548 3-126 (162)
28 cd05311 NAD_bind_2_malic_enz N 97.5 0.0021 4.6E-08 64.8 14.7 124 395-535 4-131 (226)
29 PRK08306 dipicolinate synthase 97.4 0.0011 2.3E-08 69.4 11.1 126 392-551 131-260 (296)
30 COG0460 ThrA Homoserine dehydr 97.4 0.00032 6.9E-09 74.8 6.7 112 416-569 3-125 (333)
31 PRK07232 bifunctional malic en 97.3 0.005 1.1E-07 72.1 15.6 129 391-539 160-294 (752)
32 COG0281 SfcA Malic enzyme [Ene 97.3 0.0039 8.5E-08 68.2 13.5 131 391-540 174-311 (432)
33 PLN03129 NADP-dependent malic 97.2 0.021 4.6E-07 65.0 19.5 181 322-533 243-438 (581)
34 PRK05476 S-adenosyl-L-homocyst 97.1 0.0014 3E-08 72.1 8.2 119 392-541 191-311 (425)
35 PRK12861 malic enzyme; Reviewe 97.1 0.021 4.5E-07 67.1 17.6 173 328-538 119-297 (764)
36 PRK09466 metL bifunctional asp 97.1 0.0028 6.1E-08 74.9 10.7 140 402-553 444-600 (810)
37 PF02826 2-Hacid_dh_C: D-isome 97.1 0.0012 2.7E-08 63.6 6.5 111 410-549 30-147 (178)
38 COG0373 HemA Glutamyl-tRNA red 97.0 0.005 1.1E-07 67.5 11.1 113 398-534 160-277 (414)
39 PTZ00075 Adenosylhomocysteinas 97.0 0.0025 5.4E-08 71.0 8.8 108 396-531 233-342 (476)
40 PRK12549 shikimate 5-dehydroge 97.0 0.015 3.2E-07 60.6 14.0 133 395-552 110-248 (284)
41 PRK00257 erythronate-4-phospha 96.9 0.0091 2E-07 65.0 12.2 43 403-445 103-145 (381)
42 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.014 3E-07 56.7 11.9 55 389-448 21-76 (168)
43 cd05312 NAD_bind_1_malic_enz N 96.8 0.046 1E-06 57.3 15.6 125 394-533 3-142 (279)
44 PTZ00317 NADP-dependent malic 96.7 0.06 1.3E-06 61.2 17.2 183 323-533 221-418 (559)
45 PRK13529 malate dehydrogenase; 96.7 0.13 2.8E-06 58.6 19.8 187 322-533 218-419 (563)
46 PRK15438 erythronate-4-phospha 96.7 0.015 3.2E-07 63.3 11.9 45 401-445 101-145 (378)
47 cd00401 AdoHcyase S-adenosyl-L 96.7 0.0042 9.2E-08 68.2 7.8 105 395-530 184-289 (413)
48 PRK12862 malic enzyme; Reviewe 96.7 0.031 6.7E-07 65.8 15.1 158 348-539 139-302 (763)
49 PF01488 Shikimate_DH: Shikima 96.6 0.0078 1.7E-07 55.7 7.8 105 412-538 8-117 (135)
50 smart00846 Gp_dh_N Glyceraldeh 96.6 0.013 2.9E-07 55.7 9.4 105 417-532 1-120 (149)
51 COG0057 GapA Glyceraldehyde-3- 96.5 0.017 3.7E-07 61.7 10.7 107 417-533 2-124 (335)
52 cd00762 NAD_bind_malic_enz NAD 96.5 0.025 5.4E-07 58.6 11.4 127 394-533 3-143 (254)
53 PRK13302 putative L-aspartate 96.5 0.012 2.5E-07 61.0 9.1 114 414-552 4-122 (271)
54 PF03447 NAD_binding_3: Homose 96.5 0.0033 7.2E-08 56.2 4.2 33 423-456 1-37 (117)
55 PRK00048 dihydrodipicolinate r 96.5 0.014 3E-07 59.9 9.2 111 417-556 2-119 (257)
56 PRK13243 glyoxylate reductase; 96.4 0.012 2.7E-07 62.5 9.1 108 411-548 145-259 (333)
57 PRK06436 glycerate dehydrogena 96.4 0.024 5.2E-07 59.8 11.0 103 413-548 119-228 (303)
58 COG0111 SerA Phosphoglycerate 96.4 0.019 4.1E-07 61.2 10.2 36 411-446 137-172 (324)
59 PF03446 NAD_binding_2: NAD bi 96.4 0.014 3E-07 55.4 8.4 112 417-554 2-119 (163)
60 smart00597 ZnF_TTF zinc finger 96.4 0.00096 2.1E-08 58.7 0.4 65 100-167 3-72 (90)
61 PF00044 Gp_dh_N: Glyceraldehy 96.4 0.01 2.2E-07 56.8 7.2 108 417-533 1-122 (151)
62 PRK08410 2-hydroxyacid dehydro 96.4 0.027 5.8E-07 59.4 11.0 111 412-555 141-258 (311)
63 PRK06487 glycerate dehydrogena 96.4 0.021 4.6E-07 60.4 10.2 35 412-446 144-178 (317)
64 TIGR00936 ahcY adenosylhomocys 96.3 0.017 3.7E-07 63.4 9.6 121 394-545 176-299 (406)
65 PRK13304 L-aspartate dehydroge 96.3 0.013 2.8E-07 60.3 7.9 111 417-553 2-120 (265)
66 PRK09599 6-phosphogluconate de 96.2 0.028 6.1E-07 58.5 10.3 118 417-563 1-126 (301)
67 PRK13535 erythrose 4-phosphate 96.2 0.021 4.5E-07 61.3 9.3 106 417-532 2-124 (336)
68 TIGR01532 E4PD_g-proteo D-eryt 96.1 0.025 5.5E-07 60.3 9.5 105 418-532 1-122 (325)
69 PF03949 Malic_M: Malic enzyme 96.1 0.024 5.2E-07 58.7 8.9 125 395-533 4-143 (255)
70 PLN02494 adenosylhomocysteinas 96.1 0.025 5.5E-07 63.1 9.6 117 394-541 235-353 (477)
71 cd05212 NAD_bind_m-THF_DH_Cycl 96.1 0.059 1.3E-06 50.9 10.6 108 393-552 9-118 (140)
72 PLN02928 oxidoreductase family 96.1 0.039 8.4E-07 59.2 10.5 127 411-554 154-288 (347)
73 PRK00676 hemA glutamyl-tRNA re 96.0 0.033 7.2E-07 59.8 9.6 102 399-534 158-264 (338)
74 PRK00258 aroE shikimate 5-dehy 96.0 0.17 3.7E-06 52.3 14.3 133 395-553 105-243 (278)
75 PF01113 DapB_N: Dihydrodipico 96.0 0.021 4.5E-07 52.3 6.8 116 417-553 1-123 (124)
76 TIGR00507 aroE shikimate 5-deh 95.9 0.19 4.2E-06 51.6 14.6 131 395-552 100-235 (270)
77 PRK15425 gapA glyceraldehyde-3 95.9 0.039 8.6E-07 59.1 9.8 106 417-532 3-122 (331)
78 PRK06932 glycerate dehydrogena 95.9 0.066 1.4E-06 56.7 11.2 104 412-549 143-253 (314)
79 PLN03096 glyceraldehyde-3-phos 95.9 0.041 8.8E-07 60.3 9.7 106 417-532 61-183 (395)
80 COG1748 LYS9 Saccharopine dehy 95.9 0.027 5.9E-07 61.5 8.3 128 417-567 2-135 (389)
81 PRK14176 bifunctional 5,10-met 95.9 0.039 8.4E-07 58.1 9.1 94 392-533 144-239 (287)
82 PRK07403 glyceraldehyde-3-phos 95.8 0.042 9.2E-07 59.0 9.4 105 417-531 2-122 (337)
83 cd05213 NAD_bind_Glutamyl_tRNA 95.8 0.078 1.7E-06 55.8 11.2 110 403-538 166-281 (311)
84 PLN02358 glyceraldehyde-3-phos 95.8 0.051 1.1E-06 58.4 9.8 107 417-532 6-128 (338)
85 PF02882 THF_DHG_CYH_C: Tetrah 95.7 0.06 1.3E-06 52.1 9.3 54 390-448 14-68 (160)
86 PLN03139 formate dehydrogenase 95.7 0.046 1E-06 59.7 9.2 110 411-549 194-311 (386)
87 PRK08955 glyceraldehyde-3-phos 95.6 0.075 1.6E-06 57.0 10.5 106 417-532 3-121 (334)
88 COG0499 SAM1 S-adenosylhomocys 95.6 0.056 1.2E-06 58.5 9.4 116 394-541 190-308 (420)
89 TIGR01534 GAPDH-I glyceraldehy 95.6 0.052 1.1E-06 58.1 9.2 104 418-531 1-122 (327)
90 PTZ00023 glyceraldehyde-3-phos 95.6 0.053 1.1E-06 58.3 9.1 107 417-532 3-123 (337)
91 PF10727 Rossmann-like: Rossma 95.6 0.018 4E-07 53.5 4.9 109 416-550 10-122 (127)
92 PRK07574 formate dehydrogenase 95.5 0.057 1.2E-06 58.9 9.2 109 412-549 188-304 (385)
93 TIGR01809 Shik-DH-AROM shikima 95.5 0.24 5.2E-06 51.6 13.4 133 395-551 106-251 (282)
94 PRK07729 glyceraldehyde-3-phos 95.5 0.076 1.6E-06 57.2 9.7 105 417-531 3-121 (343)
95 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.05 1.1E-06 52.8 7.5 54 394-448 6-60 (194)
96 PRK14177 bifunctional 5,10-met 95.4 0.1 2.2E-06 54.9 10.3 94 392-533 139-234 (284)
97 PRK14192 bifunctional 5,10-met 95.4 0.069 1.5E-06 55.9 9.0 52 392-448 139-191 (283)
98 PLN02272 glyceraldehyde-3-phos 95.3 0.071 1.5E-06 58.8 9.2 105 417-530 86-206 (421)
99 PRK14189 bifunctional 5,10-met 95.3 0.087 1.9E-06 55.4 9.3 52 392-448 138-190 (285)
100 PRK14175 bifunctional 5,10-met 95.3 0.043 9.4E-07 57.7 7.0 52 392-448 138-190 (286)
101 PRK13301 putative L-aspartate 95.1 0.088 1.9E-06 54.9 8.7 130 417-573 3-150 (267)
102 TIGR01327 PGDH D-3-phosphoglyc 95.1 0.12 2.6E-06 58.4 10.5 109 411-549 133-249 (525)
103 PLN02237 glyceraldehyde-3-phos 95.1 0.093 2E-06 58.2 9.2 105 417-531 76-197 (442)
104 PRK12749 quinate/shikimate deh 95.1 0.52 1.1E-05 49.4 14.3 135 396-552 108-254 (288)
105 PRK14187 bifunctional 5,10-met 95.0 0.12 2.7E-06 54.6 9.5 52 392-448 140-192 (294)
106 PRK09310 aroDE bifunctional 3- 95.0 0.33 7.2E-06 54.3 13.3 144 395-587 315-463 (477)
107 PF01408 GFO_IDH_MocA: Oxidore 95.0 0.063 1.4E-06 47.3 6.2 110 417-551 1-117 (120)
108 PLN02516 methylenetetrahydrofo 94.9 0.18 3.9E-06 53.5 10.4 52 392-448 147-199 (299)
109 PLN02819 lysine-ketoglutarate 94.9 0.078 1.7E-06 64.4 8.7 118 414-555 567-704 (1042)
110 COG0169 AroE Shikimate 5-dehyd 94.9 0.65 1.4E-05 48.9 14.4 133 396-551 108-246 (283)
111 PRK06141 ornithine cyclodeamin 94.8 0.23 5E-06 52.4 11.1 146 379-553 92-242 (314)
112 PRK06349 homoserine dehydrogen 94.8 0.046 1E-06 60.1 6.0 109 416-551 3-127 (426)
113 PRK13940 glutamyl-tRNA reducta 94.8 0.086 1.9E-06 58.0 8.0 50 399-448 164-213 (414)
114 PRK15409 bifunctional glyoxyla 94.8 0.17 3.7E-06 53.9 9.9 109 411-549 140-256 (323)
115 PLN02616 tetrahydrofolate dehy 94.8 0.17 3.7E-06 54.9 10.0 95 391-533 210-306 (364)
116 PRK14172 bifunctional 5,10-met 94.7 0.14 3.1E-06 53.7 9.0 94 392-533 138-233 (278)
117 TIGR01035 hemA glutamyl-tRNA r 94.7 0.21 4.6E-06 54.7 10.7 103 413-539 177-286 (417)
118 cd00755 YgdL_like Family of ac 94.7 0.22 4.7E-06 50.8 10.0 35 414-448 9-43 (231)
119 PF13241 NAD_binding_7: Putati 94.7 0.033 7.2E-07 49.2 3.6 36 413-448 4-39 (103)
120 PRK13581 D-3-phosphoglycerate 94.7 0.12 2.5E-06 58.5 8.8 108 411-548 135-249 (526)
121 TIGR01921 DAP-DH diaminopimela 94.6 0.15 3.2E-06 54.7 9.0 102 416-544 3-105 (324)
122 TIGR02356 adenyl_thiF thiazole 94.6 0.14 2.9E-06 50.8 8.1 37 413-449 18-54 (202)
123 PRK14169 bifunctional 5,10-met 94.6 0.24 5.1E-06 52.2 10.2 53 391-448 135-188 (282)
124 TIGR00872 gnd_rel 6-phosphoglu 94.6 0.33 7.1E-06 50.6 11.3 110 417-552 1-116 (298)
125 PRK14170 bifunctional 5,10-met 94.5 0.17 3.8E-06 53.2 9.0 94 392-533 137-232 (284)
126 PRK14186 bifunctional 5,10-met 94.5 0.2 4.3E-06 53.1 9.5 52 392-448 138-190 (297)
127 PRK13303 L-aspartate dehydroge 94.5 0.11 2.5E-06 53.4 7.6 111 417-552 2-119 (265)
128 PRK14027 quinate/shikimate deh 94.5 0.77 1.7E-05 48.1 13.7 132 395-551 110-249 (283)
129 TIGR00036 dapB dihydrodipicoli 94.4 0.28 6E-06 50.7 10.3 117 417-554 2-127 (266)
130 TIGR01505 tartro_sem_red 2-hyd 94.4 0.15 3.3E-06 52.5 8.3 109 418-552 1-116 (291)
131 PRK14166 bifunctional 5,10-met 94.4 0.19 4.1E-06 52.9 9.1 94 392-533 137-232 (282)
132 PRK14173 bifunctional 5,10-met 94.4 0.21 4.5E-06 52.7 9.3 53 391-448 134-187 (287)
133 PF01118 Semialdhyde_dh: Semia 94.3 0.14 3.1E-06 46.2 7.0 96 418-533 1-100 (121)
134 PRK00045 hemA glutamyl-tRNA re 94.3 0.3 6.6E-06 53.6 10.9 102 413-538 179-288 (423)
135 PTZ00142 6-phosphogluconate de 94.2 0.3 6.5E-06 54.7 10.7 115 417-551 2-123 (470)
136 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.07 1.5E-06 51.9 5.1 86 418-510 1-90 (180)
137 PRK14193 bifunctional 5,10-met 94.2 0.29 6.2E-06 51.6 9.9 52 392-448 138-192 (284)
138 PRK14180 bifunctional 5,10-met 94.2 0.22 4.8E-06 52.4 9.1 94 392-533 138-233 (282)
139 PRK11579 putative oxidoreducta 94.2 0.34 7.4E-06 51.3 10.6 110 417-553 5-121 (346)
140 PRK14194 bifunctional 5,10-met 94.2 0.16 3.4E-06 53.9 8.0 52 392-448 139-191 (301)
141 PF03807 F420_oxidored: NADP o 94.2 0.16 3.5E-06 43.3 6.8 89 418-532 1-95 (96)
142 TIGR00873 gnd 6-phosphoglucona 94.2 0.26 5.6E-06 55.1 10.1 113 419-552 2-121 (467)
143 PRK12548 shikimate 5-dehydroge 94.2 0.76 1.7E-05 47.9 13.0 135 396-552 110-257 (289)
144 PRK10792 bifunctional 5,10-met 94.1 0.12 2.6E-06 54.5 6.8 52 392-448 139-191 (285)
145 PRK14171 bifunctional 5,10-met 94.1 0.24 5.1E-06 52.3 8.9 52 392-448 139-191 (288)
146 PRK09424 pntA NAD(P) transhydr 94.0 0.35 7.6E-06 54.7 10.7 35 413-448 162-196 (509)
147 COG2130 Putative NADP-dependen 94.0 0.085 1.8E-06 56.1 5.4 118 386-531 128-250 (340)
148 PRK05690 molybdopterin biosynt 93.9 0.25 5.4E-06 50.5 8.7 37 413-449 29-65 (245)
149 PRK14182 bifunctional 5,10-met 93.9 0.29 6.4E-06 51.5 9.3 52 392-448 137-189 (282)
150 TIGR01546 GAPDH-II_archae glyc 93.9 0.17 3.6E-06 54.4 7.6 101 419-532 1-108 (333)
151 PRK08300 acetaldehyde dehydrog 93.9 0.13 2.9E-06 54.4 6.8 147 415-584 3-171 (302)
152 PRK15461 NADH-dependent gamma- 93.8 0.22 4.7E-06 51.9 8.1 108 418-551 3-117 (296)
153 PRK04207 glyceraldehyde-3-phos 93.7 0.38 8.2E-06 51.6 9.9 104 417-532 2-111 (341)
154 PRK08289 glyceraldehyde-3-phos 93.7 0.7 1.5E-05 51.8 12.1 74 398-476 106-187 (477)
155 PRK12490 6-phosphogluconate de 93.7 0.4 8.7E-06 50.0 9.8 109 418-552 2-117 (299)
156 PLN00203 glutamyl-tRNA reducta 93.6 0.52 1.1E-05 53.5 11.3 120 398-538 246-377 (519)
157 cd01079 NAD_bind_m-THF_DH NAD 93.6 0.21 4.5E-06 50.1 7.1 142 392-566 33-184 (197)
158 PRK14188 bifunctional 5,10-met 93.6 0.24 5.2E-06 52.4 8.1 52 391-447 137-189 (296)
159 TIGR02355 moeB molybdopterin s 93.6 0.27 5.8E-06 50.2 8.2 36 413-448 21-56 (240)
160 TIGR00518 alaDH alanine dehydr 93.6 0.71 1.5E-05 50.0 11.8 34 414-448 165-198 (370)
161 PRK14167 bifunctional 5,10-met 93.5 0.36 7.7E-06 51.2 9.2 52 392-448 137-193 (297)
162 COG5322 Predicted dehydrogenas 93.5 0.28 6.1E-06 51.6 8.2 50 394-443 145-195 (351)
163 PRK14183 bifunctional 5,10-met 93.5 0.34 7.3E-06 51.0 8.8 52 392-448 137-189 (281)
164 PLN02897 tetrahydrofolate dehy 93.4 0.34 7.4E-06 52.3 8.8 94 392-533 194-289 (345)
165 PRK08618 ornithine cyclodeamin 93.4 0.68 1.5E-05 49.0 11.1 110 415-547 126-238 (325)
166 PRK06719 precorrin-2 dehydroge 93.4 0.11 2.4E-06 49.7 4.6 34 412-445 9-42 (157)
167 PLN02520 bifunctional 3-dehydr 93.3 1 2.2E-05 51.2 13.0 133 394-551 351-495 (529)
168 PF00899 ThiF: ThiF family; I 93.3 0.2 4.2E-06 46.0 6.1 33 416-448 2-34 (135)
169 PLN02350 phosphogluconate dehy 93.3 0.56 1.2E-05 52.9 10.8 116 418-551 8-129 (493)
170 PRK08223 hypothetical protein; 93.3 0.5 1.1E-05 49.9 9.8 36 413-448 24-59 (287)
171 PRK14191 bifunctional 5,10-met 93.3 0.21 4.6E-06 52.6 7.0 52 392-448 137-189 (285)
172 PTZ00434 cytosolic glyceraldeh 93.3 0.17 3.8E-06 54.8 6.5 106 417-531 4-136 (361)
173 COG1023 Gnd Predicted 6-phosph 93.2 0.52 1.1E-05 49.0 9.4 122 417-563 1-126 (300)
174 cd00757 ThiF_MoeB_HesA_family 93.2 0.4 8.7E-06 48.2 8.6 37 413-449 18-54 (228)
175 PRK15469 ghrA bifunctional gly 93.1 0.14 3E-06 54.3 5.4 35 412-446 132-166 (312)
176 PRK06718 precorrin-2 dehydroge 93.1 0.12 2.6E-06 51.4 4.7 35 412-446 6-40 (202)
177 PRK07340 ornithine cyclodeamin 93.1 0.53 1.1E-05 49.6 9.7 114 414-552 123-239 (304)
178 PRK07680 late competence prote 93.0 0.36 7.9E-06 49.4 8.1 114 418-555 2-120 (273)
179 PRK11559 garR tartronate semia 92.9 0.53 1.1E-05 48.5 9.3 107 417-552 3-119 (296)
180 PRK11790 D-3-phosphoglycerate 92.9 0.14 3.1E-06 56.1 5.3 36 411-446 146-181 (409)
181 PRK12480 D-lactate dehydrogena 92.8 0.16 3.4E-06 54.3 5.3 106 412-549 142-254 (330)
182 PRK15116 sulfur acceptor prote 92.8 0.61 1.3E-05 48.7 9.6 37 413-449 27-63 (268)
183 PRK14181 bifunctional 5,10-met 92.8 0.56 1.2E-05 49.5 9.2 52 392-448 133-189 (287)
184 PRK12550 shikimate 5-dehydroge 92.8 1.9 4.2E-05 44.9 13.1 124 395-551 106-236 (272)
185 PRK08762 molybdopterin biosynt 92.7 0.37 7.9E-06 52.1 8.0 37 413-449 132-168 (376)
186 COG2344 AT-rich DNA-binding pr 92.7 0.35 7.7E-06 48.4 7.1 53 395-448 64-118 (211)
187 TIGR01470 cysG_Nterm siroheme 92.6 0.16 3.4E-06 50.7 4.7 34 413-446 6-39 (205)
188 cd01492 Aos1_SUMO Ubiquitin ac 92.6 0.44 9.6E-06 47.1 7.8 37 413-449 18-54 (197)
189 PRK14185 bifunctional 5,10-met 92.6 0.62 1.3E-05 49.4 9.2 52 392-448 137-193 (293)
190 cd01483 E1_enzyme_family Super 92.5 0.65 1.4E-05 42.8 8.3 31 418-448 1-31 (143)
191 KOG0068 D-3-phosphoglycerate d 92.4 0.39 8.4E-06 51.9 7.5 102 410-540 140-246 (406)
192 PRK14179 bifunctional 5,10-met 92.3 0.42 9E-06 50.4 7.5 52 392-448 138-190 (284)
193 cd08230 glucose_DH Glucose deh 92.3 2 4.4E-05 45.0 12.8 33 414-446 171-203 (355)
194 PRK14168 bifunctional 5,10-met 92.2 0.66 1.4E-05 49.2 9.0 52 392-448 141-197 (297)
195 TIGR00561 pntA NAD(P) transhyd 92.2 1.4 3.1E-05 50.0 12.1 35 413-448 161-195 (511)
196 PF00070 Pyr_redox: Pyridine n 92.2 0.62 1.3E-05 38.8 7.1 47 418-467 1-47 (80)
197 PRK15057 UDP-glucose 6-dehydro 92.2 0.68 1.5E-05 50.5 9.3 128 417-558 1-146 (388)
198 COG1052 LdhA Lactate dehydroge 92.2 0.71 1.5E-05 49.4 9.2 110 410-549 140-256 (324)
199 COG1712 Predicted dinucleotide 92.1 0.73 1.6E-05 47.4 8.6 102 417-543 1-104 (255)
200 COG1004 Ugd Predicted UDP-gluc 92.1 0.64 1.4E-05 51.2 8.8 93 414-533 308-410 (414)
201 PLN02306 hydroxypyruvate reduc 92.0 0.2 4.4E-06 54.7 5.0 35 411-445 160-195 (386)
202 PF03435 Saccharop_dh: Sacchar 92.0 0.13 2.8E-06 55.0 3.6 118 419-559 1-127 (386)
203 TIGR01202 bchC 2-desacetyl-2-h 92.0 0.35 7.5E-06 50.1 6.5 90 414-531 143-232 (308)
204 PRK07688 thiamine/molybdopteri 92.0 0.69 1.5E-05 49.7 8.9 37 413-449 21-57 (339)
205 PRK08644 thiamine biosynthesis 91.9 0.65 1.4E-05 46.5 8.2 37 413-449 25-61 (212)
206 PF01262 AlaDh_PNT_C: Alanine 91.9 0.25 5.4E-06 47.3 4.9 34 413-446 17-50 (168)
207 PRK05600 thiamine biosynthesis 91.8 0.81 1.8E-05 49.7 9.3 37 413-449 38-74 (370)
208 PRK14190 bifunctional 5,10-met 91.7 0.43 9.4E-06 50.3 6.9 52 392-448 138-190 (284)
209 PTZ00353 glycosomal glyceralde 91.7 1.1 2.3E-05 48.6 9.9 84 417-508 3-102 (342)
210 COG0569 TrkA K+ transport syst 91.3 0.77 1.7E-05 46.4 8.0 113 417-556 1-124 (225)
211 PRK10206 putative oxidoreducta 91.3 0.46 9.9E-06 50.7 6.6 110 417-551 2-119 (344)
212 PRK06567 putative bifunctional 91.2 1 2.2E-05 54.8 10.0 34 414-448 381-414 (1028)
213 COG0673 MviM Predicted dehydro 91.2 1.5 3.2E-05 45.5 10.2 112 416-551 3-122 (342)
214 PRK14851 hypothetical protein; 91.1 1.3 2.7E-05 52.1 10.4 124 413-553 40-166 (679)
215 PRK11064 wecC UDP-N-acetyl-D-m 91.0 1.2 2.5E-05 49.0 9.6 31 417-448 4-34 (415)
216 KOG0069 Glyoxylate/hydroxypyru 90.9 0.75 1.6E-05 49.6 7.8 33 410-442 156-188 (336)
217 cd01485 E1-1_like Ubiquitin ac 90.6 1.2 2.6E-05 44.1 8.5 37 413-449 16-52 (198)
218 COG0190 FolD 5,10-methylene-te 90.5 0.56 1.2E-05 49.4 6.3 52 392-448 136-188 (283)
219 COG1064 AdhP Zn-dependent alco 90.4 1.4 3.1E-05 47.6 9.4 90 415-532 166-261 (339)
220 KOG1257 NADP+-dependent malic 90.4 7.7 0.00017 44.3 15.2 179 324-534 234-426 (582)
221 PRK14618 NAD(P)H-dependent gly 90.4 1.9 4.1E-05 45.3 10.2 126 416-557 4-140 (328)
222 COG1063 Tdh Threonine dehydrog 90.3 3.7 7.9E-05 43.9 12.4 95 416-535 169-274 (350)
223 PRK14178 bifunctional 5,10-met 90.3 0.8 1.7E-05 48.2 7.2 52 392-448 132-184 (279)
224 COG2084 MmsB 3-hydroxyisobutyr 90.3 0.9 2E-05 48.0 7.6 109 417-552 1-118 (286)
225 PRK13403 ketol-acid reductoiso 90.2 0.39 8.5E-06 51.6 5.0 34 413-446 13-46 (335)
226 PRK14982 acyl-ACP reductase; P 90.0 0.82 1.8E-05 49.3 7.2 55 394-448 133-189 (340)
227 PRK14852 hypothetical protein; 89.6 1.9 4.1E-05 52.4 10.4 124 413-553 329-455 (989)
228 TIGR03215 ac_ald_DH_ac acetald 89.6 1 2.2E-05 47.5 7.3 95 417-534 2-101 (285)
229 PRK05597 molybdopterin biosynt 89.5 1.1 2.4E-05 48.2 7.8 37 413-449 25-61 (355)
230 COG1648 CysG Siroheme synthase 89.3 0.53 1.2E-05 47.4 4.8 37 412-448 8-44 (210)
231 PRK07878 molybdopterin biosynt 89.2 1.5 3.3E-05 47.8 8.6 35 414-448 40-74 (392)
232 PRK05472 redox-sensing transcr 89.1 0.74 1.6E-05 45.8 5.7 52 396-448 65-118 (213)
233 PRK08605 D-lactate dehydrogena 89.1 0.48 1E-05 50.5 4.6 34 411-444 141-175 (332)
234 TIGR00465 ilvC ketol-acid redu 89.0 0.59 1.3E-05 49.7 5.2 35 414-448 1-35 (314)
235 PRK06046 alanine dehydrogenase 89.0 3.1 6.7E-05 44.2 10.6 112 415-551 128-244 (326)
236 TIGR01692 HIBADH 3-hydroxyisob 88.9 1.3 2.9E-05 45.8 7.6 106 421-553 1-114 (288)
237 PRK12475 thiamine/molybdopteri 88.8 0.54 1.2E-05 50.4 4.8 37 413-449 21-57 (338)
238 COG0686 Ald Alanine dehydrogen 88.7 1.1 2.4E-05 48.1 6.9 34 414-448 166-199 (371)
239 PRK09260 3-hydroxybutyryl-CoA 88.6 2.5 5.4E-05 43.7 9.4 31 417-448 2-32 (288)
240 PLN02688 pyrroline-5-carboxyla 88.6 2.7 5.8E-05 42.6 9.4 24 417-440 1-24 (266)
241 PLN02353 probable UDP-glucose 88.6 2.9 6.3E-05 47.0 10.5 31 417-448 2-34 (473)
242 PRK00683 murD UDP-N-acetylmura 88.5 1.5 3.2E-05 47.8 7.9 33 415-448 2-34 (418)
243 cd01487 E1_ThiF_like E1_ThiF_l 88.4 1.6 3.4E-05 42.4 7.3 32 418-449 1-32 (174)
244 PF13380 CoA_binding_2: CoA bi 88.4 4.4 9.5E-05 36.8 9.8 104 417-553 1-109 (116)
245 KOG2380 Prephenate dehydrogena 88.2 0.5 1.1E-05 51.2 3.9 34 415-448 51-84 (480)
246 TIGR03366 HpnZ_proposed putati 88.1 5.8 0.00013 40.3 11.6 34 414-448 119-153 (280)
247 PRK05479 ketol-acid reductoiso 88.1 0.7 1.5E-05 49.7 5.1 32 413-444 14-45 (330)
248 PRK06476 pyrroline-5-carboxyla 88.1 2.3 5E-05 43.1 8.6 110 417-553 1-117 (258)
249 PRK00436 argC N-acetyl-gamma-g 88.0 1.6 3.6E-05 46.7 7.8 101 417-536 3-105 (343)
250 PRK07531 bifunctional 3-hydrox 87.8 2.2 4.8E-05 47.9 9.0 31 417-448 5-35 (495)
251 cd08239 THR_DH_like L-threonin 87.7 8.7 0.00019 39.7 12.8 33 414-446 162-195 (339)
252 PRK07530 3-hydroxybutyryl-CoA 87.5 1.1 2.3E-05 46.4 5.9 31 417-448 5-35 (292)
253 PRK10669 putative cation:proto 87.5 2.9 6.3E-05 47.4 9.8 107 417-550 418-531 (558)
254 PRK08268 3-hydroxy-acyl-CoA de 87.5 0.98 2.1E-05 51.0 6.0 31 417-448 8-38 (507)
255 PRK01438 murD UDP-N-acetylmura 87.4 0.93 2E-05 50.0 5.6 40 408-448 8-47 (480)
256 PRK15059 tartronate semialdehy 87.2 1.1 2.4E-05 46.8 5.8 114 418-562 2-124 (292)
257 PRK07819 3-hydroxybutyryl-CoA 87.1 1.1 2.3E-05 46.8 5.6 31 417-448 6-36 (286)
258 TIGR02371 ala_DH_arch alanine 87.1 4.7 0.0001 42.9 10.5 115 415-554 127-245 (325)
259 PRK14184 bifunctional 5,10-met 87.1 1.3 2.8E-05 46.9 6.2 52 392-448 137-193 (286)
260 PRK02472 murD UDP-N-acetylmura 86.7 1 2.2E-05 49.1 5.4 35 413-448 2-36 (447)
261 PRK12826 3-ketoacyl-(acyl-carr 86.7 1.1 2.4E-05 43.6 5.2 35 413-447 3-38 (251)
262 KOG1370 S-adenosylhomocysteine 86.7 1.8 3.8E-05 46.6 6.8 127 413-568 211-359 (434)
263 KOG1196 Predicted NAD-dependen 86.7 2.1 4.6E-05 45.8 7.4 122 386-532 131-255 (343)
264 PRK14106 murD UDP-N-acetylmura 86.6 0.99 2.2E-05 49.2 5.3 35 413-448 2-36 (450)
265 PRK14174 bifunctional 5,10-met 86.5 1.8 4E-05 45.9 7.0 52 392-448 139-195 (295)
266 PRK07877 hypothetical protein; 86.5 0.64 1.4E-05 54.8 3.9 129 413-562 104-234 (722)
267 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.4 1.1 2.4E-05 50.7 5.6 31 417-448 6-36 (503)
268 PRK03562 glutathione-regulated 86.2 3.3 7.2E-05 48.0 9.4 108 417-551 401-515 (621)
269 PRK03659 glutathione-regulated 86.1 3.3 7.2E-05 47.7 9.4 113 417-555 401-520 (601)
270 PLN02545 3-hydroxybutyryl-CoA 86.1 1.4 2.9E-05 45.7 5.7 31 417-448 5-35 (295)
271 PRK08328 hypothetical protein; 86.1 0.94 2E-05 45.9 4.4 36 413-448 24-59 (231)
272 PLN02712 arogenate dehydrogena 86.1 1.2 2.5E-05 52.2 5.7 36 410-445 363-398 (667)
273 PF07991 IlvN: Acetohydroxy ac 86.1 1.1 2.3E-05 43.9 4.6 34 414-448 2-35 (165)
274 PRK05808 3-hydroxybutyryl-CoA 85.9 2.9 6.2E-05 43.0 7.9 31 417-448 4-34 (282)
275 TIGR01850 argC N-acetyl-gamma- 85.9 2 4.3E-05 46.2 7.0 101 417-536 1-105 (346)
276 COG2085 Predicted dinucleotide 85.7 3.9 8.4E-05 41.6 8.5 29 417-445 2-30 (211)
277 TIGR02354 thiF_fam2 thiamine b 85.7 1.1 2.4E-05 44.6 4.6 37 413-449 18-54 (200)
278 cd08237 ribitol-5-phosphate_DH 85.6 6.2 0.00013 41.5 10.4 90 415-530 163-256 (341)
279 PLN02858 fructose-bisphosphate 85.5 3 6.4E-05 52.7 9.2 111 415-552 3-123 (1378)
280 TIGR01832 kduD 2-deoxy-D-gluco 85.5 1.3 2.8E-05 43.4 5.0 34 413-446 2-36 (248)
281 PRK05717 oxidoreductase; Valid 85.4 1.4 3E-05 43.7 5.2 35 411-445 5-40 (255)
282 COG0771 MurD UDP-N-acetylmuram 85.3 4.7 0.0001 45.2 9.7 35 413-448 4-38 (448)
283 PRK08628 short chain dehydroge 85.1 1.4 3E-05 43.6 5.0 36 411-446 2-38 (258)
284 PRK07060 short chain dehydroge 85.1 1.6 3.4E-05 42.6 5.3 35 412-446 5-40 (245)
285 PRK04690 murD UDP-N-acetylmura 85.0 1.2 2.5E-05 49.6 4.9 34 414-448 6-39 (468)
286 PRK06928 pyrroline-5-carboxyla 84.7 3.1 6.6E-05 43.1 7.5 118 417-559 2-127 (277)
287 PLN02858 fructose-bisphosphate 84.6 3.3 7.1E-05 52.3 9.0 119 415-562 323-451 (1378)
288 PRK09496 trkA potassium transp 84.6 11 0.00025 40.8 12.2 35 413-448 228-262 (453)
289 PRK12828 short chain dehydroge 84.6 1.6 3.5E-05 42.1 5.1 34 413-446 4-38 (239)
290 PRK06841 short chain dehydroge 84.5 1.7 3.6E-05 42.9 5.3 34 413-446 12-46 (255)
291 PRK07523 gluconate 5-dehydroge 84.5 1.6 3.5E-05 43.2 5.2 35 413-448 7-42 (255)
292 PRK10309 galactitol-1-phosphat 84.3 7.4 0.00016 40.5 10.3 35 414-448 159-193 (347)
293 PRK06153 hypothetical protein; 84.3 0.67 1.5E-05 50.9 2.6 36 413-448 173-208 (393)
294 TIGR01761 thiaz-red thiazoliny 84.1 3 6.4E-05 45.1 7.3 109 416-551 3-119 (343)
295 PRK01710 murD UDP-N-acetylmura 84.1 1.4 3E-05 48.7 5.0 35 413-448 11-45 (458)
296 PRK05562 precorrin-2 dehydroge 84.1 1.5 3.2E-05 44.8 4.8 35 413-447 22-56 (223)
297 cd05188 MDR Medium chain reduc 84.0 17 0.00037 35.3 12.1 41 408-448 127-167 (271)
298 PRK08293 3-hydroxybutyryl-CoA 83.9 2 4.2E-05 44.5 5.7 31 417-448 4-34 (287)
299 PLN02240 UDP-glucose 4-epimera 83.7 1.8 3.8E-05 45.0 5.3 34 413-446 2-36 (352)
300 KOG2018 Predicted dinucleotide 83.6 2.6 5.6E-05 45.4 6.4 36 413-448 71-106 (430)
301 PRK08291 ectoine utilization p 83.5 17 0.00036 38.7 12.6 116 415-555 131-252 (330)
302 PRK12491 pyrroline-5-carboxyla 83.3 3.3 7.1E-05 43.0 7.0 121 417-562 3-130 (272)
303 PRK06523 short chain dehydroge 83.2 2 4.3E-05 42.6 5.2 35 412-446 5-40 (260)
304 PF03721 UDPG_MGDP_dh_N: UDP-g 83.1 1.5 3.3E-05 43.0 4.3 29 417-445 1-29 (185)
305 PLN02586 probable cinnamyl alc 83.1 3.3 7.2E-05 44.0 7.2 35 414-448 182-216 (360)
306 PRK04148 hypothetical protein; 83.0 2.2 4.8E-05 40.3 5.2 33 414-448 15-47 (134)
307 PRK06823 ornithine cyclodeamin 83.0 9.2 0.0002 40.8 10.4 149 378-554 93-246 (315)
308 PRK02006 murD UDP-N-acetylmura 83.0 1.7 3.7E-05 48.5 5.1 36 413-449 4-39 (498)
309 PRK01390 murD UDP-N-acetylmura 83.0 1.7 3.7E-05 47.8 5.1 34 414-448 7-40 (460)
310 COG1179 Dinucleotide-utilizing 82.9 1.3 2.7E-05 46.1 3.7 35 414-448 28-62 (263)
311 PRK05557 fabG 3-ketoacyl-(acyl 82.7 2.5 5.4E-05 40.9 5.6 36 413-448 2-38 (248)
312 PRK06138 short chain dehydroge 82.6 2.1 4.6E-05 41.9 5.1 34 413-446 2-36 (252)
313 KOG0022 Alcohol dehydrogenase, 82.6 1.4 3E-05 47.5 4.0 50 389-445 173-223 (375)
314 PRK05786 fabG 3-ketoacyl-(acyl 82.6 2.3 5E-05 41.3 5.4 34 413-446 2-36 (238)
315 PRK14620 NAD(P)H-dependent gly 82.6 3 6.5E-05 43.8 6.5 31 417-448 1-31 (326)
316 PRK13394 3-hydroxybutyrate deh 82.5 2.2 4.8E-05 42.0 5.2 33 413-445 4-37 (262)
317 PLN02827 Alcohol dehydrogenase 82.5 17 0.00037 39.0 12.3 36 413-448 191-226 (378)
318 PRK11880 pyrroline-5-carboxyla 82.5 7.7 0.00017 39.3 9.2 32 417-448 3-36 (267)
319 PRK08217 fabG 3-ketoacyl-(acyl 82.4 2.4 5.2E-05 41.3 5.4 35 413-448 2-37 (253)
320 PRK07231 fabG 3-ketoacyl-(acyl 82.4 2.4 5.1E-05 41.4 5.3 35 413-448 2-37 (251)
321 PRK12429 3-hydroxybutyrate deh 82.3 2.3 4.9E-05 41.7 5.2 32 414-445 2-34 (258)
322 PRK07774 short chain dehydroge 82.3 2.3 5E-05 41.6 5.3 33 413-445 3-36 (250)
323 TIGR02992 ectoine_eutC ectoine 82.3 9.2 0.0002 40.7 10.1 115 415-554 128-248 (326)
324 COG0289 DapB Dihydrodipicolina 82.3 15 0.00031 38.8 11.1 120 416-556 2-128 (266)
325 PF01210 NAD_Gly3P_dh_N: NAD-d 82.0 3.9 8.4E-05 38.7 6.5 30 418-448 1-30 (157)
326 PRK06949 short chain dehydroge 81.9 2.5 5.4E-05 41.6 5.4 35 412-446 5-40 (258)
327 PRK12742 oxidoreductase; Provi 81.8 2.6 5.6E-05 41.0 5.3 34 413-446 3-37 (237)
328 PRK06125 short chain dehydroge 81.8 2.6 5.6E-05 41.9 5.5 35 412-446 3-38 (259)
329 PRK07066 3-hydroxybutyryl-CoA 81.8 2.4 5.3E-05 45.3 5.5 31 417-448 8-38 (321)
330 TIGR00978 asd_EA aspartate-sem 81.8 2.7 5.8E-05 45.0 5.9 102 417-531 1-105 (341)
331 PLN02896 cinnamyl-alcohol dehy 81.7 2.5 5.4E-05 44.4 5.6 37 411-447 5-42 (353)
332 PRK08642 fabG 3-ketoacyl-(acyl 81.7 2.5 5.4E-05 41.4 5.2 35 413-447 2-37 (253)
333 PRK08416 7-alpha-hydroxysteroi 81.7 2.5 5.4E-05 42.2 5.3 37 412-448 4-41 (260)
334 CHL00073 chlN photochlorophyll 81.5 17 0.00037 40.9 12.2 94 332-448 250-346 (457)
335 PRK09072 short chain dehydroge 81.5 2.6 5.7E-05 41.9 5.4 34 413-446 2-36 (263)
336 COG1250 FadB 3-hydroxyacyl-CoA 81.4 1.8 3.9E-05 46.2 4.4 32 416-448 3-34 (307)
337 cd08298 CAD2 Cinnamyl alcohol 81.4 13 0.00029 38.0 10.6 38 411-448 163-200 (329)
338 PRK12938 acetyacetyl-CoA reduc 81.2 2.7 5.8E-05 41.2 5.3 35 414-448 1-36 (246)
339 TIGR02622 CDP_4_6_dhtase CDP-g 81.2 2.3 5E-05 44.6 5.1 33 414-446 2-35 (349)
340 PLN02740 Alcohol dehydrogenase 81.1 17 0.00036 38.9 11.6 32 414-445 197-229 (381)
341 COG0677 WecC UDP-N-acetyl-D-ma 80.9 11 0.00023 42.0 10.0 119 417-551 10-151 (436)
342 TIGR01296 asd_B aspartate-semi 80.9 2.2 4.8E-05 45.8 4.9 25 418-442 1-26 (339)
343 PRK08703 short chain dehydroge 80.8 2.9 6.2E-05 40.9 5.3 34 413-446 3-37 (239)
344 PLN02256 arogenate dehydrogena 80.8 3 6.5E-05 44.1 5.8 34 413-446 33-66 (304)
345 PRK04308 murD UDP-N-acetylmura 80.6 2.6 5.6E-05 46.2 5.4 35 413-448 2-36 (445)
346 PRK06057 short chain dehydroge 80.6 2.7 5.9E-05 41.6 5.1 33 413-445 4-37 (255)
347 PRK08264 short chain dehydroge 80.6 2.8 6.2E-05 40.8 5.2 34 413-446 3-38 (238)
348 PRK09186 flagellin modificatio 80.5 2.7 5.9E-05 41.3 5.1 32 414-445 2-34 (256)
349 PRK07806 short chain dehydroge 80.3 3.2 6.9E-05 40.7 5.4 35 413-447 3-38 (248)
350 PRK14619 NAD(P)H-dependent gly 80.2 2.6 5.6E-05 44.1 5.0 33 415-448 3-35 (308)
351 cd08281 liver_ADH_like1 Zinc-d 80.2 26 0.00056 37.2 12.6 32 414-445 190-222 (371)
352 PRK08993 2-deoxy-D-gluconate 3 80.1 2.8 6.1E-05 41.7 5.0 33 413-445 7-40 (253)
353 PRK06550 fabG 3-ketoacyl-(acyl 80.0 3 6.5E-05 40.5 5.1 34 413-446 2-36 (235)
354 PRK06172 short chain dehydroge 80.0 3 6.5E-05 41.1 5.2 35 413-448 4-39 (253)
355 TIGR02819 fdhA_non_GSH formald 79.9 13 0.00028 40.4 10.4 35 414-448 184-218 (393)
356 PRK07411 hypothetical protein; 79.9 2.1 4.6E-05 46.8 4.4 36 413-448 35-70 (390)
357 PRK05579 bifunctional phosphop 79.9 4 8.7E-05 45.0 6.5 54 401-457 175-245 (399)
358 PRK12939 short chain dehydroge 79.9 3.2 6.9E-05 40.5 5.3 33 413-445 4-37 (250)
359 PRK10637 cysG siroheme synthas 79.9 2.3 4.9E-05 47.4 4.7 35 412-446 8-42 (457)
360 PRK00141 murD UDP-N-acetylmura 79.8 2.6 5.7E-05 46.9 5.2 35 413-448 12-46 (473)
361 PRK12829 short chain dehydroge 79.8 3 6.5E-05 41.1 5.1 34 413-446 8-42 (264)
362 PLN02653 GDP-mannose 4,6-dehyd 79.7 2.7 5.9E-05 43.8 5.0 35 413-447 3-38 (340)
363 PRK08261 fabG 3-ketoacyl-(acyl 79.7 9 0.00019 41.8 9.2 34 412-445 206-240 (450)
364 PRK06522 2-dehydropantoate 2-r 79.7 2.6 5.6E-05 43.1 4.8 31 417-448 1-31 (304)
365 PRK08655 prephenate dehydrogen 79.5 7.1 0.00015 43.4 8.4 31 417-448 1-32 (437)
366 PRK00066 ldh L-lactate dehydro 79.5 3.3 7.2E-05 43.9 5.6 34 415-448 5-39 (315)
367 PRK08339 short chain dehydroge 79.5 3.3 7.1E-05 41.7 5.4 36 412-448 4-40 (263)
368 PRK05875 short chain dehydroge 79.5 3.4 7.3E-05 41.4 5.4 34 413-446 4-38 (276)
369 PRK05867 short chain dehydroge 79.5 3.1 6.7E-05 41.2 5.1 33 413-445 6-39 (253)
370 PRK03369 murD UDP-N-acetylmura 79.4 2.7 5.9E-05 47.0 5.2 34 414-448 10-43 (488)
371 PRK11730 fadB multifunctional 79.4 3.1 6.8E-05 49.0 5.9 31 417-448 314-344 (715)
372 COG2423 Predicted ornithine cy 79.3 26 0.00057 37.9 12.3 151 379-556 97-251 (330)
373 PRK07589 ornithine cyclodeamin 79.2 25 0.00054 38.2 12.2 117 415-555 128-249 (346)
374 TIGR03325 BphB_TodD cis-2,3-di 79.1 3.5 7.5E-05 41.2 5.3 33 413-445 2-35 (262)
375 PRK07576 short chain dehydroge 79.0 3.4 7.3E-05 41.5 5.3 34 413-446 6-40 (264)
376 PRK09880 L-idonate 5-dehydroge 79.0 5.6 0.00012 41.6 7.1 35 414-448 168-202 (343)
377 PRK06197 short chain dehydroge 79.0 3 6.6E-05 42.8 5.0 35 413-447 13-48 (306)
378 PRK08945 putative oxoacyl-(acy 79.0 3.1 6.7E-05 40.9 4.9 34 413-446 9-43 (247)
379 PLN02206 UDP-glucuronate decar 79.0 2.9 6.2E-05 46.4 5.1 37 410-446 113-150 (442)
380 PRK12937 short chain dehydroge 79.0 3.8 8.2E-05 39.9 5.5 36 413-448 2-38 (245)
381 PRK06124 gluconate 5-dehydroge 78.9 3.5 7.5E-05 40.7 5.2 35 412-446 7-42 (256)
382 PRK06398 aldose dehydrogenase; 78.9 3.4 7.4E-05 41.3 5.2 34 413-446 3-37 (258)
383 TIGR02437 FadB fatty oxidation 78.9 3.3 7.2E-05 48.8 5.9 31 417-448 314-344 (714)
384 PRK00421 murC UDP-N-acetylmura 78.8 2.8 6E-05 46.3 5.0 34 414-448 5-39 (461)
385 PRK07114 keto-hydroxyglutarate 78.8 12 0.00026 38.3 9.1 95 425-556 26-121 (222)
386 PRK12748 3-ketoacyl-(acyl-carr 78.8 3.2 6.9E-05 41.2 5.0 33 413-445 2-37 (256)
387 COG1004 Ugd Predicted UDP-gluc 78.7 15 0.00032 40.8 10.3 129 417-556 1-153 (414)
388 PRK08664 aspartate-semialdehyd 78.7 2.8 6E-05 45.0 4.8 99 417-531 4-108 (349)
389 PRK07890 short chain dehydroge 78.6 3.4 7.4E-05 40.7 5.1 34 414-448 3-37 (258)
390 PRK07035 short chain dehydroge 78.5 3.6 7.8E-05 40.5 5.2 34 413-446 5-39 (252)
391 TIGR02822 adh_fam_2 zinc-bindi 78.3 13 0.00028 39.0 9.5 33 414-446 164-196 (329)
392 PRK15181 Vi polysaccharide bio 78.3 3.1 6.8E-05 43.8 5.0 35 413-447 12-47 (348)
393 PRK08936 glucose-1-dehydrogena 78.2 4 8.7E-05 40.6 5.5 36 412-447 3-39 (261)
394 COG0136 Asd Aspartate-semialde 78.2 14 0.00031 40.0 9.9 114 416-553 1-132 (334)
395 PRK12746 short chain dehydroge 77.9 4.1 9E-05 40.1 5.4 33 413-445 3-36 (254)
396 PLN00141 Tic62-NAD(P)-related 77.9 3.6 7.8E-05 41.1 5.0 35 413-447 14-49 (251)
397 PRK08063 enoyl-(acyl carrier p 77.8 4 8.6E-05 40.0 5.3 35 414-448 2-37 (250)
398 PRK06196 oxidoreductase; Provi 77.8 3.7 8.1E-05 42.5 5.3 36 411-446 21-57 (315)
399 KOG0023 Alcohol dehydrogenase, 77.7 3.8 8.2E-05 44.3 5.3 42 406-448 173-214 (360)
400 PLN02662 cinnamyl-alcohol dehy 77.7 3.3 7.1E-05 42.4 4.8 32 415-446 3-35 (322)
401 PRK08213 gluconate 5-dehydroge 77.7 3.9 8.5E-05 40.5 5.2 34 413-446 9-43 (259)
402 PRK12823 benD 1,6-dihydroxycyc 77.6 3.8 8.2E-05 40.5 5.1 35 413-448 5-40 (260)
403 PRK06171 sorbitol-6-phosphate 77.6 3.9 8.4E-05 40.7 5.2 34 413-446 6-40 (266)
404 TIGR02441 fa_ox_alpha_mit fatt 77.6 3.4 7.4E-05 48.9 5.5 31 417-448 336-366 (737)
405 PRK06079 enoyl-(acyl carrier p 77.4 3.6 7.7E-05 41.1 4.9 33 413-445 4-39 (252)
406 PRK07814 short chain dehydroge 77.4 4 8.7E-05 40.8 5.2 34 413-446 7-41 (263)
407 TIGR03736 PRTRC_ThiF PRTRC sys 77.4 2.8 6.1E-05 43.3 4.2 26 415-440 10-35 (244)
408 PRK07062 short chain dehydroge 77.3 4 8.6E-05 40.6 5.2 36 412-448 4-40 (265)
409 PRK09135 pteridine reductase; 77.3 4.2 9.1E-05 39.5 5.2 34 414-447 4-38 (249)
410 cd05291 HicDH_like L-2-hydroxy 77.3 2.2 4.7E-05 44.8 3.4 32 417-448 1-33 (306)
411 PRK05653 fabG 3-ketoacyl-(acyl 77.3 4.2 9.1E-05 39.3 5.2 34 413-446 2-36 (246)
412 PRK05225 ketol-acid reductoiso 77.2 1.3 2.9E-05 49.7 1.9 31 413-443 33-63 (487)
413 PRK06935 2-deoxy-D-gluconate 3 77.2 4.1 8.9E-05 40.4 5.2 33 413-445 12-45 (258)
414 KOG1502 Flavonol reductase/cin 77.2 3.7 8E-05 44.3 5.1 33 415-447 5-38 (327)
415 PLN02514 cinnamyl-alcohol dehy 77.1 7.1 0.00015 41.3 7.3 42 407-448 172-213 (357)
416 PRK08226 short chain dehydroge 77.1 4.1 8.8E-05 40.4 5.1 34 413-446 3-37 (263)
417 PRK14874 aspartate-semialdehyd 77.0 5.3 0.00011 42.7 6.3 84 416-527 1-91 (334)
418 PRK11154 fadJ multifunctional 77.0 4 8.7E-05 48.0 5.8 31 417-448 310-341 (708)
419 PRK07326 short chain dehydroge 77.0 4.2 9.2E-05 39.5 5.1 32 414-445 4-36 (237)
420 PLN02986 cinnamyl-alcohol dehy 76.9 4.6 0.0001 41.6 5.7 35 414-448 3-38 (322)
421 PF13738 Pyr_redox_3: Pyridine 76.8 3.3 7.1E-05 39.4 4.2 33 413-446 164-196 (203)
422 PRK06463 fabG 3-ketoacyl-(acyl 76.8 4.6 0.0001 40.0 5.4 35 413-447 4-39 (255)
423 PRK06500 short chain dehydroge 76.7 4.1 8.9E-05 39.8 5.0 33 413-445 3-36 (249)
424 PRK06077 fabG 3-ketoacyl-(acyl 76.6 4.9 0.00011 39.3 5.5 36 413-448 3-39 (252)
425 PRK07063 short chain dehydroge 76.6 4.3 9.4E-05 40.2 5.2 33 413-445 4-37 (260)
426 PRK07478 short chain dehydroge 76.6 4.4 9.6E-05 40.0 5.2 34 413-446 3-37 (254)
427 TIGR03206 benzo_BadH 2-hydroxy 76.5 4.2 9E-05 39.8 5.0 32 414-445 1-33 (250)
428 PRK05876 short chain dehydroge 76.5 4.3 9.4E-05 41.3 5.3 35 413-448 3-38 (275)
429 PRK06194 hypothetical protein; 76.4 4.3 9.4E-05 40.9 5.2 35 413-448 3-38 (287)
430 PRK05866 short chain dehydroge 76.4 4.6 0.0001 41.6 5.5 35 411-445 35-70 (293)
431 PRK12859 3-ketoacyl-(acyl-carr 76.4 4.1 8.8E-05 40.7 4.9 33 413-445 3-38 (256)
432 PRK06300 enoyl-(acyl carrier p 76.4 3.7 8.1E-05 43.1 4.9 35 412-447 4-41 (299)
433 PLN02695 GDP-D-mannose-3',5'-e 76.3 3.8 8.2E-05 43.9 5.0 32 415-446 20-52 (370)
434 PRK08594 enoyl-(acyl carrier p 76.3 4.1 8.8E-05 41.0 5.0 33 413-445 4-39 (257)
435 cd08231 MDR_TM0436_like Hypoth 76.3 7.4 0.00016 40.7 7.0 41 407-447 169-210 (361)
436 PF02254 TrkA_N: TrkA-N domain 76.2 4.1 9E-05 35.7 4.4 102 419-550 1-112 (116)
437 PF13460 NAD_binding_10: NADH( 76.2 4.2 9E-05 38.1 4.7 30 419-448 1-31 (183)
438 PRK12481 2-deoxy-D-gluconate 3 76.2 4.1 8.9E-05 40.6 4.9 33 413-445 5-38 (251)
439 PRK05872 short chain dehydroge 76.1 4.5 9.8E-05 41.6 5.3 34 412-445 5-39 (296)
440 PLN02775 Probable dihydrodipic 76.1 16 0.00036 38.7 9.5 113 417-555 12-137 (286)
441 PLN02383 aspartate semialdehyd 75.9 6.7 0.00015 42.3 6.7 26 415-440 6-32 (344)
442 PLN02178 cinnamyl-alcohol dehy 75.8 7.2 0.00016 41.9 7.0 35 414-448 177-211 (375)
443 PRK06505 enoyl-(acyl carrier p 75.7 4.1 8.8E-05 41.5 4.8 35 413-448 4-41 (271)
444 PRK12359 flavodoxin FldB; Prov 75.6 6.6 0.00014 38.4 6.0 45 412-456 75-129 (172)
445 PRK12825 fabG 3-ketoacyl-(acyl 75.6 5.3 0.00012 38.5 5.4 36 413-448 3-39 (249)
446 TIGR02130 dapB_plant dihydrodi 75.6 14 0.00031 38.9 8.8 119 418-555 2-126 (275)
447 PRK12827 short chain dehydroge 75.6 4.7 0.0001 39.2 5.0 34 413-446 3-37 (249)
448 PLN02730 enoyl-[acyl-carrier-p 75.3 4.4 9.5E-05 42.8 5.0 34 411-444 4-40 (303)
449 cd08295 double_bond_reductase_ 75.3 8.8 0.00019 39.9 7.2 35 414-448 150-185 (338)
450 PLN00198 anthocyanidin reducta 75.2 4.5 9.9E-05 42.1 5.1 34 413-446 6-40 (338)
451 PLN02214 cinnamoyl-CoA reducta 75.2 4.5 9.8E-05 42.6 5.1 34 414-447 8-42 (342)
452 PLN02427 UDP-apiose/xylose syn 75.2 4.6 0.0001 43.1 5.3 36 411-446 9-46 (386)
453 PRK09242 tropinone reductase; 75.2 4.9 0.00011 39.8 5.2 34 413-446 6-40 (257)
454 PRK07856 short chain dehydroge 75.0 5.5 0.00012 39.4 5.4 34 413-446 3-37 (252)
455 PRK05993 short chain dehydroge 74.8 4.8 0.0001 40.7 5.1 32 415-446 3-35 (277)
456 PLN03154 putative allyl alcoho 74.8 8.4 0.00018 40.7 7.1 35 414-448 157-192 (348)
457 PF03853 YjeF_N: YjeF-related 74.7 26 0.00055 33.8 9.8 47 394-444 7-57 (169)
458 PRK08265 short chain dehydroge 74.7 5.2 0.00011 40.0 5.2 35 413-448 3-38 (261)
459 TIGR01182 eda Entner-Doudoroff 74.7 11 0.00024 38.0 7.5 90 425-555 19-109 (204)
460 PRK06914 short chain dehydroge 74.6 5.1 0.00011 40.2 5.2 32 415-446 2-34 (280)
461 PRK05565 fabG 3-ketoacyl-(acyl 74.6 5.4 0.00012 38.7 5.2 36 413-448 2-38 (247)
462 PRK09620 hypothetical protein; 74.6 5.2 0.00011 40.7 5.2 34 414-447 1-51 (229)
463 PRK06015 keto-hydroxyglutarate 74.6 12 0.00026 37.7 7.7 90 426-556 16-106 (201)
464 PRK07825 short chain dehydroge 74.5 5.6 0.00012 39.8 5.4 33 413-445 2-35 (273)
465 TIGR01915 npdG NADPH-dependent 74.4 4.8 0.0001 40.0 4.8 31 417-448 1-32 (219)
466 PRK08085 gluconate 5-dehydroge 74.2 5.3 0.00011 39.5 5.1 35 413-448 6-41 (254)
467 PRK08017 oxidoreductase; Provi 74.2 4.9 0.00011 39.5 4.8 30 417-446 3-33 (256)
468 PRK07370 enoyl-(acyl carrier p 74.1 5 0.00011 40.3 4.9 33 413-445 3-38 (258)
469 PRK07577 short chain dehydroge 74.1 5.6 0.00012 38.5 5.1 33 415-447 2-35 (234)
470 PRK07533 enoyl-(acyl carrier p 74.1 5.4 0.00012 40.0 5.2 36 412-448 6-44 (258)
471 PLN02253 xanthoxin dehydrogena 73.9 5.5 0.00012 40.0 5.2 33 413-445 15-48 (280)
472 PRK08589 short chain dehydroge 73.8 5.7 0.00012 40.1 5.3 33 413-445 3-36 (272)
473 COG0300 DltE Short-chain dehyd 73.8 13 0.00028 39.1 7.9 36 413-448 3-39 (265)
474 PRK12771 putative glutamate sy 73.8 4.3 9.2E-05 46.1 4.8 34 414-448 135-168 (564)
475 PRK06198 short chain dehydroge 73.7 5.8 0.00013 39.2 5.2 36 413-448 3-39 (260)
476 PRK12744 short chain dehydroge 73.7 5.8 0.00012 39.4 5.2 35 413-447 5-40 (257)
477 PRK06114 short chain dehydroge 73.6 5.9 0.00013 39.3 5.3 35 413-448 5-40 (254)
478 TIGR03628 arch_S11P archaeal r 73.6 13 0.00029 34.4 7.1 63 389-451 38-109 (114)
479 cd01491 Ube1_repeat1 Ubiquitin 73.5 4.2 9.2E-05 42.9 4.4 36 414-449 17-52 (286)
480 PF00106 adh_short: short chai 73.5 6.2 0.00013 36.1 5.0 32 417-448 1-33 (167)
481 PRK06182 short chain dehydroge 73.5 5.7 0.00012 39.9 5.2 32 415-446 2-34 (273)
482 PRK07831 short chain dehydroge 73.3 5.6 0.00012 39.6 5.0 35 413-448 14-50 (262)
483 PRK09607 rps11p 30S ribosomal 73.3 14 0.0003 35.1 7.2 66 389-454 45-119 (132)
484 PRK05854 short chain dehydroge 73.3 5.7 0.00012 41.4 5.3 35 412-446 10-45 (313)
485 TIGR01381 E1_like_apg7 E1-like 73.3 4.1 8.9E-05 47.6 4.5 38 412-449 334-371 (664)
486 PRK07666 fabG 3-ketoacyl-(acyl 73.2 6.4 0.00014 38.4 5.3 34 413-446 4-38 (239)
487 PRK09496 trkA potassium transp 73.2 4.5 9.7E-05 44.0 4.6 29 417-445 1-29 (453)
488 PRK07417 arogenate dehydrogena 73.1 4.5 9.8E-05 41.7 4.4 31 417-448 1-31 (279)
489 cd08284 FDH_like_2 Glutathione 73.0 60 0.0013 33.4 12.7 33 413-445 165-198 (344)
490 COG0345 ProC Pyrroline-5-carbo 73.0 13 0.00028 39.1 7.7 122 417-563 2-128 (266)
491 PRK07634 pyrroline-5-carboxyla 72.9 11 0.00023 37.6 6.9 25 415-439 3-27 (245)
492 PF02558 ApbA: Ketopantoate re 72.7 6 0.00013 36.3 4.8 30 419-448 1-30 (151)
493 TIGR01752 flav_long flavodoxin 72.7 9.2 0.0002 36.6 6.1 51 404-454 65-126 (167)
494 PRK07067 sorbitol dehydrogenas 72.6 6.1 0.00013 39.1 5.1 33 413-445 3-36 (257)
495 PLN02686 cinnamoyl-CoA reducta 72.6 6 0.00013 42.3 5.4 38 411-448 48-86 (367)
496 PRK08278 short chain dehydroge 72.6 6.5 0.00014 39.8 5.4 34 413-446 3-37 (273)
497 PRK12769 putative oxidoreducta 72.5 5 0.00011 46.5 5.1 34 414-448 325-358 (654)
498 PRK08277 D-mannonate oxidoredu 72.4 6.3 0.00014 39.6 5.2 36 412-448 6-42 (278)
499 PRK07984 enoyl-(acyl carrier p 72.3 6.3 0.00014 40.0 5.2 34 414-448 4-40 (262)
500 cd08278 benzyl_alcohol_DH Benz 72.2 71 0.0015 33.8 13.3 35 414-448 185-219 (365)
No 1
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-130 Score=1046.69 Aligned_cols=399 Identities=50% Similarity=0.947 Sum_probs=389.8
Q ss_pred hhhHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEec
Q 007820 190 SKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (588)
Q Consensus 190 ~~~~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~~~~~p~y~~~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs 269 (588)
...++.+++.+.+|+|+|+||+|+|+|+++++.|+|+++|+|..++++|++|+|+|+|+|||+||+|++++|+|||||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn 90 (454)
T PTZ00079 11 AQEMDALRKRVKSRDPNQPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYN 90 (454)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeecCCCHHHHHHHhHhhhhhhcccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccC
Q 007820 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (588)
Q Consensus 270 ~alGPakGGlRfhp~vt~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVp 349 (588)
+++|||||||||||+||++++++||++|||||||++||||||||||+|||+++|+.|||||||+||++|.+||||++|||
T Consensus 91 ~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~Dvp 170 (454)
T PTZ00079 91 SALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVP 170 (454)
T ss_pred CCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHH
Q 007820 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (588)
Q Consensus 350 ApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~ 429 (588)
||||||+++||+||+++|+++++++.|++||||+.+|||.+|++||||||+|++++++++++.+++|+||+||||||||+
T Consensus 171 A~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~ 250 (454)
T PTZ00079 171 AGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQ 250 (454)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhcc-CChhhhhhccCCceEeCCCCccccccceeecCCCc
Q 007820 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ 508 (588)
Q Consensus 430 ~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~-gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~ 508 (588)
++|++|.+.|+|||+|||++|+||||+|||+++|..|+++|+.+ +++.+|...++++++++++++|+++||||+|||++
T Consensus 251 ~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~ 330 (454)
T PTZ00079 251 YAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQ 330 (454)
T ss_pred HHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEecccc
Confidence 99999999999999999999999999999999998889998765 78999876677899999999999999999999999
Q ss_pred CccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhcC
Q 007820 509 NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQV 588 (588)
Q Consensus 509 n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~~ 588 (588)
|+||.++|++|++++||+|+||||||+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|||++||++
T Consensus 331 n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~ 410 (454)
T PTZ00079 331 NEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLRE 410 (454)
T ss_pred ccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999973
No 2
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-125 Score=1009.97 Aligned_cols=396 Identities=44% Similarity=0.836 Sum_probs=385.3
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccchH--HHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEecC
Q 007820 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (588)
Q Consensus 193 ~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~~~~~p~y~~--~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs~ 270 (588)
++++++.+.+|+|+|+||+|++++++++++++++.+|+|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~ 82 (445)
T PRK14030 3 IEKIMTSLEAKHPGESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN 82 (445)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence 46889999999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHhHhhhhhhcccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccCC
Q 007820 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (588)
Q Consensus 271 alGPakGGlRfhp~vt~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVpA 350 (588)
++|||||||||||++|++|+++||++|||||||++||||||||||++||+.+|+.|||||||+|+++|.+||||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpA 162 (445)
T PRK14030 83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPA 162 (445)
T ss_pred cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHH
Q 007820 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (588)
Q Consensus 351 pDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~ 430 (588)
|||||+++||+||+|+|+++.+++++++||||+.+|||.+|++||||||+++++++++++|.+++|+||+||||||||++
T Consensus 163 pDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~ 242 (445)
T PRK14030 163 GDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWG 242 (445)
T ss_pred cccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCCh-hhhhhccCCceEeCCCCccccccceeecCCCcC
Q 007820 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (588)
Q Consensus 431 aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL-~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n 509 (588)
+|++|.+.|+|||+|||++|+||||+|||++++..|+++|+..+++ ..+.+.||++++++++++|+++||||+|||++|
T Consensus 243 aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n 322 (445)
T PRK14030 243 AATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQN 322 (445)
T ss_pred HHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccc
Confidence 9999999999999999999999999999999988889999888876 455567789999999999999999999999999
Q ss_pred ccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhcC
Q 007820 510 EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQV 588 (588)
Q Consensus 510 ~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~~ 588 (588)
+||.+||++|++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|||++||++
T Consensus 323 ~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~ 401 (445)
T PRK14030 323 ELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQ 401 (445)
T ss_pred cCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999873
No 3
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-121 Score=985.62 Aligned_cols=394 Identities=45% Similarity=0.844 Sum_probs=380.5
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccch--HHHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEecC
Q 007820 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYV--NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (588)
Q Consensus 193 ~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~~~~~p~y~--~~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs~ 270 (588)
.+++++.+++|+|+|+||+|+|+|+++++.|+|+++|+|. +++++|++|+|+++|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~ 82 (444)
T PRK14031 3 AAKVLEDLKRRFPNEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNN 82 (444)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecC
Confidence 3678999999999999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHhHhhhhhhcccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccCC
Q 007820 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (588)
Q Consensus 271 alGPakGGlRfhp~vt~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVpA 350 (588)
++|||||||||||+++++|+++||++|||||||++||||||||||++||+++|+.|+|||||+|+++|.++|||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipA 162 (444)
T PRK14031 83 AIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPA 162 (444)
T ss_pred CCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHH
Q 007820 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (588)
Q Consensus 351 pDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~ 430 (588)
|||||+++||+||+|+|++++++..|++||||+.+|||.+|.+||||||+++++++++++|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~ 242 (444)
T PRK14031 163 GDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQY 242 (444)
T ss_pred cccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc-cCChhhhhhccCCceEeCCCCccccccceeecCCCcC
Q 007820 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ-QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (588)
Q Consensus 431 aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~-~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n 509 (588)
+|++|.+.|+|||+|||++|+||||+|||+++|..+.+++.. ++++.+|...+ ++++++++++|+.+||||+|||++|
T Consensus 243 aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~-ga~~i~~d~~~~~~cDIliPaAl~n 321 (444)
T PRK14031 243 TAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKY-GCKYVEGARPWGEKGDIALPSATQN 321 (444)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhc-CCEEcCCcccccCCCcEEeeccccc
Confidence 999999999999999999999999999999998766777766 57888875444 6888999999999999999999999
Q ss_pred ccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 510 EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 510 ~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
+||.+||++|...+|++|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|||++||+
T Consensus 322 ~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~ 399 (444)
T PRK14031 322 ELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLK 399 (444)
T ss_pred ccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHH
Confidence 999999999977778899999999999999999999999999999999999999999999999999999999999986
No 4
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-119 Score=947.87 Aligned_cols=367 Identities=40% Similarity=0.674 Sum_probs=352.1
Q ss_pred CccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEecCCCCCCCCCeeeecCCC
Q 007820 207 EIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMN 286 (588)
Q Consensus 207 ~~ef~q~v~e~~~~~~~~~~~~p~y~~~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~vt 286 (588)
+++|.|++.++..++.+. ...+ .++|+|++|+|+++|++||+||+|++++|+|||||||+++||||||+||||+||
T Consensus 1 ~~~~~~a~~~~~~~~~~~-~~~~---~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~ 76 (411)
T COG0334 1 ENEFEQAVKELEKALEPL-YLDE---GVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVT 76 (411)
T ss_pred CcHHHHHHHHHHHhhhhc-cCch---hHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCC
Confidence 468999999999998883 2222 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhhcccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHH
Q 007820 287 LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQ 366 (588)
Q Consensus 287 ~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~ 366 (588)
++++++||+||||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||||||||++++|+||+|+
T Consensus 77 ~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~de 156 (411)
T COG0334 77 LEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDE 156 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhCCC-CccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 367 YRRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 367 y~~l~g~~-~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
|+++.|.. .|++||||+++|||.+|++||||||+++++++++.++.+|+|+||+||||||||+++|++|++.|||||++
T Consensus 157 y~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~ 236 (411)
T COG0334 157 YSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAV 236 (411)
T ss_pred hhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEE
Confidence 99999765 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCe
Q 007820 446 SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCR 525 (588)
Q Consensus 446 SDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~ak 525 (588)
||++|+|||++|||+++|. +.|+..+++.+| +++++++++++|++|||||+|||++|+||.+||++| +||
T Consensus 237 sds~g~i~~~~Gld~~~l~---~~~~~~~~v~~~----~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l---~ak 306 (411)
T COG0334 237 SDSKGGIYDEDGLDVEALL---ELKERRGSVAEY----AGAEYITNEELLEVDCDILIPCALENVITEDNADQL---KAK 306 (411)
T ss_pred EcCCCceecCCCCCHHHHH---HHhhhhhhHHhh----cCceEccccccccccCcEEcccccccccchhhHHHh---hhc
Confidence 9999999999999999973 666666778776 679999999999999999999999999999999999 999
Q ss_pred EEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 526 ILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 526 iVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
+|+||||||+|+||+++|.+|||+|+||+++|||||++|||||+||+++++||+|||++||+
T Consensus 307 ~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~ 368 (411)
T COG0334 307 IVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLE 368 (411)
T ss_pred EEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3e-116 Score=944.96 Aligned_cols=392 Identities=52% Similarity=0.948 Sum_probs=378.6
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccchH--HHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEec
Q 007820 192 TAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (588)
Q Consensus 192 ~~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~~~~~p~y~~--~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs 269 (588)
.++.+++++.+|+|+|+||+|++++++++++++++.+|+|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~ 85 (445)
T PRK09414 6 YLESVLEQVKKRNPGQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFN 85 (445)
T ss_pred HHHHHHHHHHhhCcCCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEec
Confidence 578999999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeecCCCHHHHHHHhHhhhhhhcccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccC
Q 007820 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (588)
Q Consensus 270 ~alGPakGGlRfhp~vt~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVp 349 (588)
+++||+||||||||+++++|+++||++|||||||++||||||||||++||+.+|+.|||||||+|+++|.++|||++|||
T Consensus 86 ~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~Dip 165 (445)
T PRK09414 86 SAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVP 165 (445)
T ss_pred CCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHH
Q 007820 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (588)
Q Consensus 350 ApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~ 429 (588)
||||||++++|+||+++|++++++..|++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+
T Consensus 166 apDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~ 245 (445)
T PRK09414 166 AGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAI 245 (445)
T ss_pred ccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhcc-CChhhhhhccCCceEeCCCCccccccceeecCCCc
Q 007820 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ 508 (588)
Q Consensus 430 ~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~-gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~ 508 (588)
++|++|.+.|+|||+|||++|+||||+|||+++| .++|+.+ +++.+|...+ ++++++++++|+.+||||||||++
T Consensus 246 ~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~~~~~~-~~~~i~~~~i~~~d~DVliPaAl~ 321 (445)
T PRK09414 246 YAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISEYAEEF-GAEYLEGGSPWSVPCDIALPCATQ 321 (445)
T ss_pred HHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhhhhhhc-CCeecCCccccccCCcEEEecCCc
Confidence 9999999999999999999999999999999886 5667665 5788774333 678899999999999999999999
Q ss_pred CccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 509 NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 509 n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
|+||++||.+|++++||+|+||||+|+|++|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+
T Consensus 322 n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~ 400 (445)
T PRK09414 322 NELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLH 400 (445)
T ss_pred CcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998875
No 6
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=3.6e-113 Score=914.28 Aligned_cols=366 Identities=29% Similarity=0.497 Sum_probs=356.2
Q ss_pred cHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEecCCCCCCCCCeeeecCCCHH
Q 007820 209 EFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLS 288 (588)
Q Consensus 209 ef~q~v~e~~~~~~~~~~~~p~y~~~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~vt~~ 288 (588)
.+++.++++++.++++++.+|. +++.|++|+|+++|+|||+||+|++++|+|||||||+++||+||||||||++|++
T Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~---~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ 78 (410)
T PLN02477 2 NALAATNRNFREAARLLGLDSK---LEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPD 78 (410)
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHH
Confidence 3688999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhhhhcccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHh
Q 007820 289 IAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYR 368 (588)
Q Consensus 289 evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~ 368 (588)
|+++||++|||||||++||||||||||++||+.+|+.|++|+||+|+++|.++|||++|||||||||+++||+||+++|+
T Consensus 79 ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~ 158 (410)
T PLN02477 79 EVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYS 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 369 RLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 369 ~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++.|++.+++||||+.+|||.+|++||||||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||+|||+
T Consensus 159 ~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 159 KFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred HhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEE
Q 007820 449 KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILV 528 (588)
Q Consensus 449 ~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVv 528 (588)
+|+||||+|||+++| .+++.+++++.+| |+++.++++++|..+||||+|||++|+||++||++| +||+|+
T Consensus 239 ~G~iy~~~GLD~~~L---~~~k~~~g~l~~~----~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i---~ak~I~ 308 (410)
T PLN02477 239 TGAVKNENGLDIPAL---RKHVAEGGGLKGF----PGGDPIDPDDILVEPCDVLIPAALGGVINKENAADV---KAKFIV 308 (410)
T ss_pred CCeEECCCCCCHHHH---HHHHHhcCchhcc----ccceEecCccceeccccEEeeccccccCCHhHHHHc---CCcEEE
Confidence 999999999999875 6777778888765 688899999999999999999999999999999999 999999
Q ss_pred ecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 529 EGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 529 EgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|++|+|+++|+
T Consensus 309 egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~ 367 (410)
T PLN02477 309 EAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELD 367 (410)
T ss_pred eCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-112 Score=899.93 Aligned_cols=413 Identities=44% Similarity=0.714 Sum_probs=384.6
Q ss_pred hhhhhHHHHHHHHhhccchhhhcccchhhhHHhhhhHHHHHHHHHhhCCCCccHHHHHHHHHHH--HHHHHHhCccchHH
Q 007820 157 HNNSLLHKEALRLQMASKDKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHA--LERVIAKNSHYVNI 234 (588)
Q Consensus 157 h~~~~~h~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~ef~q~v~e~~~~--~~~~~~~~p~y~~~ 234 (588)
|.++++|++|++++.+.+++ ...|.|++.+++.. +|.+++|.|+..|.+.+ ....++++|.|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~--~~~p~~~~~v~~~~-----------~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~I 67 (514)
T KOG2250|consen 1 HTLFLLFAAAHQYHNSTKDM--ADSPTFLKMVESMY-----------APAAIEFQQALAEDVLSLELSSKFEKSPLYTAI 67 (514)
T ss_pred CchHHHHHHHHHhhhccccc--ccChHHHHHHHhhc-----------cccchhhhhhhHHHHhcchhhhhhhhhhHhhhh
Confidence 56789999999999999988 88898877654432 38999999999999999 77899999999999
Q ss_pred HHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEecCCCCCCCCCeeeecCCCHHHHHHHhHhhhhhhcccCCCCCCceEE
Q 007820 235 MERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGG 314 (588)
Q Consensus 235 ~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~vt~~evkaLA~~MT~KnAL~gLP~GGaKGG 314 (588)
+.+|..|+|+++|++||.+|+|+.+|++|||||||.++||+||||||||+||+|++++||+.||||||++++||||||||
T Consensus 68 l~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGG 147 (514)
T KOG2250|consen 68 LFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGG 147 (514)
T ss_pred hhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCc
Q 007820 315 SDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEA 394 (588)
Q Consensus 315 I~~DP~~~S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eA 394 (588)
|++||+++|+.|++|+||+||++|.+||||++|||||||||++|||+||+++|+++.|++.+++||||+.||||++|.+|
T Consensus 148 i~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~A 227 (514)
T KOG2250|consen 148 ILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEA 227 (514)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhC--CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc
Q 007820 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g--~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~ 472 (588)
|||||+|+++.++++++ .+++|+||+||||||||++++++|++.|+|||+|+|++|+|+||+|||+++|..+.+ .
T Consensus 228 TG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~---~ 304 (514)
T KOG2250|consen 228 TGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLAD---E 304 (514)
T ss_pred cchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHH---h
Confidence 99999999999999998 799999999999999999999999999999999999999999999999999755554 4
Q ss_pred cCChhhh---hhccCCceEeCCC--CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCC
Q 007820 473 QRSLRDY---SKTYARSKYYDEA--KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN 547 (588)
Q Consensus 473 ~gsL~~y---~~~~p~a~~i~~~--eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rG 547 (588)
+++++.| ...+++ ++... .+|..+||||+|||+||+||.+||..|++-+||+||||||||+||||+++|+++|
T Consensus 305 k~~i~~f~~~~~~~~~--~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~g 382 (514)
T KOG2250|consen 305 KKTIKSFDGAKLSYEG--YIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAG 382 (514)
T ss_pred hccccccccccccCcc--ccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCC
Confidence 5555544 222222 22223 3456799999999999999999999999999999999999999999999999999
Q ss_pred ceEeccccccccCceeeecccccccc-------cCCCCHHHHHhhhc
Q 007820 548 VLIAPAMAAGAGGVVAGELELNQECN-------MVHWSPEDFESKLQ 587 (588)
Q Consensus 548 I~viPD~laNAGGVivS~~E~~qN~~-------~~~ws~eeV~~~L~ 587 (588)
|+++||+.||||||+||||||+||++ .+.|++|.|+.+|+
T Consensus 383 v~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~ 429 (514)
T KOG2250|consen 383 VLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLA 429 (514)
T ss_pred eEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHH
Confidence 99999999999999999999999999 68899999999875
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=6e-70 Score=621.85 Aligned_cols=337 Identities=18% Similarity=0.228 Sum_probs=302.8
Q ss_pred HHHHhhcCCCeEEEEEEeEEcCCCCeEEEEEEEEEecCCCCCCCCCeeeecC-----------CCHHHHHHHhHhhhhhh
Q 007820 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPS-----------MNLSIAKFLGFEQTLKN 301 (588)
Q Consensus 233 ~~~e~L~~Per~i~frvp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~-----------vt~~evkaLA~~MT~Kn 301 (588)
..++.|..|++.+.+.+|+ | ..|+|||++|+.+ +||||||||+ ++.+|+.+||++||+||
T Consensus 464 ~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KN 534 (1002)
T PTZ00324 464 SFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKN 534 (1002)
T ss_pred HHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhc
Confidence 3778899999999998887 5 6899999999999 9999999998 88999999999999999
Q ss_pred cccCCCCCCceEEEecCCCCCCH---HHHHHHHHHHHHHHHhhcCCCCcc-----------CCCCCCCChhHHHHHHHHH
Q 007820 302 ALSPYKLGGAAGGSDFDPKGKSD---NEIMRFCQSFMNEIHRYLGPDKDL-----------PSEEMGVGTREMGYLFGQY 367 (588)
Q Consensus 302 AL~gLP~GGaKGGI~~DP~~~S~---~El~R~~r~f~~eL~r~IGp~~DV-----------pApDiGt~~reM~~i~~~y 367 (588)
| +||+|||||||.+||+..++ .|++|++++|+++|..+|||+.|| ||||+||+++.|+|+ ++|
T Consensus 535 a--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~ 611 (1002)
T PTZ00324 535 K--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALH 611 (1002)
T ss_pred C--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHH
Confidence 8 99999999999999998887 899999999999999999999999 999999999999999 999
Q ss_pred hhHhCCC--CccccCCcccccCCCCCC-CccHHHHHHHHHHHHHHhCCCCCCcEEEEec--cchHHHHHHHHHHHCCCeE
Q 007820 368 RRLAGHF--QGSFTGPRIFWSGSSLRT-EATGYGLVFFAQLILADMNKELKGLRCVVSG--SGKIAMHVLEKLIAYGAIP 442 (588)
Q Consensus 368 ~~l~g~~--~g~vTGKp~~~GGs~~r~-eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG--fGNVG~~aAe~L~e~GAKV 442 (588)
.+.+|++ .+++||||...||+.++. ++||+||+++++++++++|.++++.||++|| |||||+++++++. +||
T Consensus 612 s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~kl 688 (1002)
T PTZ00324 612 AKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKT 688 (1002)
T ss_pred HHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEE
Confidence 9999986 689999999999999997 9999999999999999999999999999999 9999999999864 799
Q ss_pred EEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------cc-----------CCceEe-----CCCCc---ccc
Q 007820 443 VSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TY-----------ARSKYY-----DEAKP---WNE 497 (588)
Q Consensus 443 VaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~-----------p~a~~i-----~~~ei---l~~ 497 (588)
|||+|.+|++|||+|||+++|.+ ++..++++.+|.. .+ |+.+.+ ..+++ +..
T Consensus 689 VAv~D~~G~~~DP~GLd~~EL~r---l~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~ 765 (1002)
T PTZ00324 689 VGIVDGSGVLHDPEGLNREELRR---LAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYS 765 (1002)
T ss_pred EEEEcCCCEEECCCCCCHHHHHH---HHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhccccCC
Confidence 99999999999999999999744 4445677775521 11 222222 22333 478
Q ss_pred ccceeecCCC-cCccchhhHHhhh-----hcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccc
Q 007820 498 RCDVAFPCAS-QNEIDQSDAINLV-----NSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQE 571 (588)
Q Consensus 498 dcDILIPcA~-~n~It~enA~~l~-----~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN 571 (588)
+||||+||+. ++.||++||..++ +.+||+|+||||+|+||+|+.+|+++||+++||+++|+|||++||+||+||
T Consensus 766 ~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl~~ 845 (1002)
T PTZ00324 766 DADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVLAA 845 (1002)
T ss_pred CccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHHhc
Confidence 9999999999 9999999994322 139999999999999999999999999999999999999999999999999
Q ss_pred cc------------------cCCCC--HHHHHhhhc
Q 007820 572 CN------------------MVHWS--PEDFESKLQ 587 (588)
Q Consensus 572 ~~------------------~~~ws--~eeV~~~L~ 587 (588)
++ ..+|+ .+||.++|+
T Consensus 846 l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~ 881 (1002)
T PTZ00324 846 LALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIE 881 (1002)
T ss_pred cccchhhhhhhhcccccCCccchhHHHHHHHHHHHH
Confidence 99 88999 999999986
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=4.6e-63 Score=500.04 Aligned_cols=209 Identities=48% Similarity=0.889 Sum_probs=201.9
Q ss_pred cCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCC
Q 007820 379 TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGF 458 (588)
Q Consensus 379 TGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGL 458 (588)
||||+.+|||.+|++||||||++++++++++++.+++|+||+||||||||+++|++|.++|+|||+|||++|+||||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCC-hhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCH
Q 007820 459 DYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP 537 (588)
Q Consensus 459 Die~L~~L~~~k~~~gs-L~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~ 537 (588)
|+++|..|.+++..+++ +.+|...+|++++++++++|+.+||||+|||++|+||.+||++|++++||+|+||||+|+|+
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99999888888877766 68887777789999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 538 EAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 538 eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
+|+++|++|||+|+||+++|||||++|||||+||.++++|++|+|+++|+
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~ 210 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLK 210 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=1.1e-53 Score=430.04 Aligned_cols=199 Identities=35% Similarity=0.599 Sum_probs=180.8
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHhCC-CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHH
Q 007820 386 SGSSLRTEATGYGLVFFAQLILADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (588)
Q Consensus 386 GGs~~r~eATG~GV~~~i~~~l~~~g~-~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~ 464 (588)
|||.+|.++|||||++++++++++++. +++|+||+||||||||+++|++|+++|++||+|||++|+||||+|||+++|
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l- 79 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEEL- 79 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHH-
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHH-
Confidence 799999999999999999999999886 499999999999999999999999999999999999999999999999886
Q ss_pred HHHHHhhccCC-hhhhhhccC-CceEeCCC-CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHH
Q 007820 465 FLRDIKSQQRS-LRDYSKTYA-RSKYYDEA-KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD 541 (588)
Q Consensus 465 ~L~~~k~~~gs-L~~y~~~~p-~a~~i~~~-eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~ 541 (588)
++++...++ +..|....+ ++++++++ ++|+++||||+|||++|+||.+||.+.++.+||+||||||+|+||+|++
T Consensus 80 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~ 157 (244)
T PF00208_consen 80 --LRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE 157 (244)
T ss_dssp --HHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH
T ss_pred --HHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH
Confidence 566667676 877743333 57888884 8999999999999999999999999555667999999999999999999
Q ss_pred HHHHCCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 542 VLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 542 iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
+|++|||+|+||+++|||||++||+||+||+++++|++|+|.++|+
T Consensus 158 ~L~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~ 203 (244)
T PF00208_consen 158 ILRERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLE 203 (244)
T ss_dssp HHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHH
T ss_pred HHHHCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=3.6e-52 Score=414.88 Aligned_cols=192 Identities=31% Similarity=0.490 Sum_probs=183.5
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHH
Q 007820 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (588)
Q Consensus 386 GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~ 465 (588)
|||.+|+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+|||+++|
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l-- 78 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPAL-- 78 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHH--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHhhccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHH
Q 007820 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK 545 (588)
Q Consensus 466 L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~ 545 (588)
.+++..++++..| +++++++++++|..+||||+|||++|+||+++|++| +|++|+||||+|+||+|+++|++
T Consensus 79 -~~~~~~~g~l~~~----~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l---~a~~I~egAN~~~t~~a~~~L~~ 150 (227)
T cd01076 79 -LAYKKEHGSVLGF----PGAERITNEELLELDCDILIPAALENQITADNADRI---KAKIIVEAANGPTTPEADEILHE 150 (227)
T ss_pred -HHHHHhcCCcccC----CCceecCCccceeecccEEEecCccCccCHHHHhhc---eeeEEEeCCCCCCCHHHHHHHHH
Confidence 6667777888765 667888999999999999999999999999999999 99999999999999999999999
Q ss_pred CCceEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 546 ANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 546 rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
|||+|+||+++|||||++||+||.||++++.|++++|.++|+
T Consensus 151 rGi~~~PD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~ 192 (227)
T cd01076 151 RGVLVVPDILANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLE 192 (227)
T ss_pred CCCEEEChHHhcCcchhhhHHHHhhhhccCcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998886
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=4.5e-51 Score=404.61 Aligned_cols=183 Identities=30% Similarity=0.505 Sum_probs=171.4
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhcc
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~ 473 (588)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|++||+|||++|++||| |||++++ .+++...
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l---~~~~~~~ 76 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEEL---INYAVAL 76 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHH---HHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999 9999885 4445555
Q ss_pred CChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEecc
Q 007820 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPA 553 (588)
Q Consensus 474 gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD 553 (588)
+++..| |.++.++++++|..+||||||||++|+||+++|.++ +||+|+||||+|+|++|+++|++|||+|+||
T Consensus 77 ~~~~~~----~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l---~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 77 GGSARV----KVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKL---KAKVVAEGANNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred CCcccc----CcccccCcccceeccccEEeeccccCccChhhHhhc---CccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence 666554 556778889999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 554 MAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 554 ~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
+++|||||++||+||+||.++++|++|+|+++|+
T Consensus 150 ~~~NaGGvi~s~~E~~q~~~~~~w~~~~v~~~l~ 183 (217)
T cd05211 150 IVANAGGVIVSYFEWVQNLQRLSWDAEEVRSKLE 183 (217)
T ss_pred HHhcCCCeEeEHHHhcCCccccCCCHHHHHHHHH
Confidence 9999999999999999999999999999998875
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=4.6e-45 Score=336.62 Aligned_cols=131 Identities=41% Similarity=0.716 Sum_probs=125.1
Q ss_pred CCeEEEEEEeEEcCCCCeEEEEEEEEEecCCCCCCCCCeeeecCCCHHHHHHHhHhhhhhhcccCCCCCCceEEEecCCC
Q 007820 241 PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPK 320 (588)
Q Consensus 241 Per~i~frvp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~vt~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~ 320 (588)
|||+++|+|||++|+|....++|||||||+++||+||||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHh
Q 007820 321 GKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLA 371 (588)
Q Consensus 321 ~~S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~ 371 (588)
.+|..|+++++|+|+++|.++|||+.|||||||||+++||+||+++|++++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~t 131 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRVT 131 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhcC
Confidence 999999999999999999999999999999999999999999999999874
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=9e-36 Score=291.41 Aligned_cols=162 Identities=21% Similarity=0.332 Sum_probs=142.6
Q ss_pred CCccHHHHHHHHHHHHHHh--CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHH
Q 007820 392 TEATGYGLVFFAQLILADM--NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~--g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~ 469 (588)
+.+|||||+++++++++++ +.+++||+|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++. .+
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~---~~ 67 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVA---RA 67 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHH---HH
Confidence 5699999999999999997 789999999999999999999999999999987 88762 33332 22
Q ss_pred hhccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCC-HHHHHHHHHCCc
Q 007820 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT-PEAVDVLKKANV 548 (588)
Q Consensus 470 k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T-~eA~~iL~~rGI 548 (588)
++ .+ +++.++.++++..+|||++|||++++||.+++++| +|++|+||||+|+| ++++++|+++||
T Consensus 68 ~~----------~~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l---~~~~v~~~AN~~~~~~~~~~~L~~~Gi 133 (200)
T cd01075 68 AE----------LF-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQL---KAKAIAGAANNQLADPRHGQMLHERGI 133 (200)
T ss_pred HH----------Hc-CCEEEcchhhccccCCEEEecccccccCHHHHHHc---CCCEEEECCcCccCCHhHHHHHHHCCC
Confidence 11 11 45667778899889999999999999999999999 99999999999999 999999999999
Q ss_pred eEeccccccccCceeeecccccccccCCCCHHHHHhhhc
Q 007820 549 LIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (588)
Q Consensus 549 ~viPD~laNAGGVivS~~E~~qN~~~~~ws~eeV~~~L~ 587 (588)
+|+||+++|||||++||+||+||. ++++.++++
T Consensus 134 ~~~Pd~~~NaGGv~~~~~e~~~~~------~~~~~~~~~ 166 (200)
T cd01075 134 LYAPDYVVNAGGLINVADELYGGN------EARVLAKVE 166 (200)
T ss_pred EEeCceeeeCcCceeehhHHhCCc------HHHHHHHHH
Confidence 999999999999999999999964 678887764
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.93 E-value=2.7e-26 Score=203.45 Aligned_cols=83 Identities=45% Similarity=0.728 Sum_probs=79.4
Q ss_pred cceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecccccccccCCCC
Q 007820 499 CDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWS 578 (588)
Q Consensus 499 cDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~~qN~~~~~ws 578 (588)
||||+|||++++||.++|.+| +||+|+||||+|+|++|+++|++|||+|+||+++|||||++||+||.||.++ +
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l---~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~ 76 (102)
T smart00839 3 CDIFIPCALQNVINEANANRL---GAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---T 76 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---C
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999875 8
Q ss_pred HHHHHhhhc
Q 007820 579 PEDFESKLQ 587 (588)
Q Consensus 579 ~eeV~~~L~ 587 (588)
.|+|.+++.
T Consensus 77 ~e~v~~~~~ 85 (102)
T smart00839 77 AEEVFTDLS 85 (102)
T ss_pred HHHHHHHHH
Confidence 899987654
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.89 E-value=2.8e-21 Score=224.70 Aligned_cols=294 Identities=18% Similarity=0.195 Sum_probs=215.4
Q ss_pred EEEEEEEecCCCCCCCCCeeeecCCCH---HHHHHHhHhhhhhhcccCCCCCCceEEEecC--CCCCCHHHHH----HHH
Q 007820 261 NRGFRVQFSQALGPCRGGLRFHPSMNL---SIAKFLGFEQTLKNALSPYKLGGAAGGSDFD--PKGKSDNEIM----RFC 331 (588)
Q Consensus 261 ~rGyRVqhs~alGPakGGlRfhp~vt~---~evkaLA~~MT~KnAL~gLP~GGaKGGI~~D--P~~~S~~El~----R~~ 331 (588)
++|+...|-.. +.||||++ +-+. .|+..|+..|..||| .||=+|||||+... |.+-++.|++ +.+
T Consensus 785 vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvlgLvKAQqvKNa--vIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Y 858 (1592)
T COG2902 785 VEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVLGLVKAQQVKNA--VIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACY 858 (1592)
T ss_pred ceEEEeecccc---cccccccc-ccchhHHHHHHHHHHHHHhcCC--cccccCCcceEecccCCCCCchHHHHHhhHHHH
Confidence 57877776554 99999998 4444 699999999999997 46778999999986 5677888876 467
Q ss_pred HHHHHHHHhh---cCCC------------Cc----cCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCC
Q 007820 332 QSFMNEIHRY---LGPD------------KD----LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRT 392 (588)
Q Consensus 332 r~f~~eL~r~---IGp~------------~D----VpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~ 392 (588)
+.|++-|... |.-+ -| |.|+|-||- .--+| +..-.+- .|++-|+.+..|||.|.+
T Consensus 859 k~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTA-tFsD~-AN~vA~~----~~fwl~DAFaSGgS~Gyd 932 (1592)
T COG2902 859 KAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTA-TFSDI-ANSVARE----YGFWLGDAFASGGSAGYD 932 (1592)
T ss_pred HHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcc-cHHHH-HHHHHHH----hCCChhhhhhcCCCCCCC
Confidence 7888887642 2111 11 568899982 11111 1111112 366778888999998764
Q ss_pred ----CccHHHHHHHHHHHHHHhCCCCCCcEEEEeccc----hHHHHHHHHHHHCCCeEEEEEcCCCeeeCC-CCCCHHHH
Q 007820 393 ----EATGYGLVFFAQLILADMNKELKGLRCVVSGSG----KIAMHVLEKLIAYGAIPVSVSDAKGYLVDE-DGFDYMKI 463 (588)
Q Consensus 393 ----eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfG----NVG~~aAe~L~e~GAKVVaVSDs~G~Iydp-dGLDie~L 463 (588)
..|++|++.+++..++.+|.++..-.+.+.|.| .|+.. ..|...--+.||+-|.++..+|| -+++...+
T Consensus 933 HK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgN--gMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~ 1010 (1592)
T COG2902 933 HKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGN--GMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFA 1010 (1592)
T ss_pred ccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCcccccc--ceeccccceeeEEecCCceeeCCCCCccccHH
Confidence 599999999999999999999999999999864 44443 23344446789999999999999 57777665
Q ss_pred HHHHHHhhccCChhhhhhc--cCCce------------------------EeCCCC----c--------cccccceeecC
Q 007820 464 SFLRDIKSQQRSLRDYSKT--YARSK------------------------YYDEAK----P--------WNERCDVAFPC 505 (588)
Q Consensus 464 ~~L~~~k~~~gsL~~y~~~--~p~a~------------------------~i~~~e----i--------l~~dcDILIPc 505 (588)
++.......+.++.+|... ++++- ..++.+ + |.--.|.+|||
T Consensus 1011 eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw~GGIgTYVka 1090 (1592)
T COG2902 1011 ERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKA 1090 (1592)
T ss_pred HHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhccCCCceeEec
Confidence 5434344456677777421 11111 111221 1 33346677999
Q ss_pred CCc-CccchhhHHhhhh-----cCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeeccc
Q 007820 506 ASQ-NEIDQSDAINLVN-----SGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELEL 568 (588)
Q Consensus 506 A~~-n~It~enA~~l~~-----~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~ 568 (588)
+.+ |.+.+++|...+. .+||+|+||||..+|+.+.-.|.++|..+.-|.+.|+|||.+|.+|.
T Consensus 1091 ~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EV 1159 (1592)
T COG2902 1091 SGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEV 1159 (1592)
T ss_pred CCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccchhh
Confidence 996 6777777766553 58999999999999999999999999999999999999999999997
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.81 E-value=6.8e-19 Score=211.55 Aligned_cols=291 Identities=17% Similarity=0.214 Sum_probs=214.1
Q ss_pred EEEEEEEecCCCCCCCCCeeeecCCC--HHHHHHHhHhhhhhhcccCCCCCCceEEEecCCCCC--CHHH----HHHHHH
Q 007820 261 NRGFRVQFSQALGPCRGGLRFHPSMN--LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGK--SDNE----IMRFCQ 332 (588)
Q Consensus 261 ~rGyRVqhs~alGPakGGlRfhp~vt--~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~--S~~E----l~R~~r 332 (588)
|.|+.+.+... +.||||++.... ..|+..|+..|..||| .||=||||||+.++.... ++++ ....++
T Consensus 723 ~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKNa--vIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~ 797 (1528)
T PF05088_consen 723 FEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKNA--VIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYK 797 (1528)
T ss_pred eEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcCC--cccCCCCceeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 67888887776 999999954432 2799999999999996 567799999999864433 5553 346789
Q ss_pred HHHHHHHhh---------cCC---------CCc-cCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCC-
Q 007820 333 SFMNEIHRY---------LGP---------DKD-LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRT- 392 (588)
Q Consensus 333 ~f~~eL~r~---------IGp---------~~D-VpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~- 392 (588)
.|++.|... +.| |-+ |.|.|-|| ..+.-++.+-..- .|++-|..+..|||.|..
T Consensus 798 ~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGT--AtfSD~AN~ia~~----~gfWLgDAFASGGS~GYDH 871 (1528)
T PF05088_consen 798 TFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGT--ATFSDIANEIAAE----YGFWLGDAFASGGSAGYDH 871 (1528)
T ss_pred HHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCc--chHHHHHHHHHHH----cCCCcchhhhcCCcCCCCc
Confidence 999999754 222 211 77999999 3333334443332 356778899999999874
Q ss_pred ---CccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHH--HHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHH
Q 007820 393 ---EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVL--EKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLR 467 (588)
Q Consensus 393 ---eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aA--e~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~ 467 (588)
..|++|.+.+++..++++|.++....+.|+|.|.++.-+- -.|...-.|.||.-|.....+||+- |++.- ..
T Consensus 872 K~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~S--f~ 948 (1528)
T PF05088_consen 872 KKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAAS--FA 948 (1528)
T ss_pred hhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcCC-Chhhh--HH
Confidence 5999999999999999999999999999999877766543 2455566899999999999999997 66531 22
Q ss_pred HHhh----ccCChhhhhhc--------cC-Cc-----------------eEeCCCC----ccccccceeecC--------
Q 007820 468 DIKS----QQRSLRDYSKT--------YA-RS-----------------KYYDEAK----PWNERCDVAFPC-------- 505 (588)
Q Consensus 468 ~~k~----~~gsL~~y~~~--------~p-~a-----------------~~i~~~e----il~~dcDILIPc-------- 505 (588)
+.+. .+.++.+|... |+ .+ ..+++++ +|..|+|+|---
T Consensus 949 ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKa 1028 (1528)
T PF05088_consen 949 ERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKA 1028 (1528)
T ss_pred HHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEec
Confidence 2222 23366776421 00 01 1233333 357899999554
Q ss_pred CCcCccc---------hhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeeccc
Q 007820 506 ASQNEID---------QSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELEL 568 (588)
Q Consensus 506 A~~n~It---------~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E~ 568 (588)
+.+.-.+ .-|+..| +||+|+||+|..+|+.++-.+..+|..+--|++-|||||-+|-+|.
T Consensus 1029 s~Es~~~vgDkaND~vRV~g~~l---rakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1029 STESHADVGDKANDAVRVNGSEL---RAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred CCCcccccccccCcceeechHHc---eEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchh
Confidence 4443222 2356666 9999999999999999999999999999999999999999999996
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.16 E-value=5.1e-11 Score=125.59 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=64.1
Q ss_pred cEEEEeccchHHHHHHHHHHH--------CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceE
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA--------YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY 488 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e--------~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~ 488 (588)
++|+|+||||||+.+++.|.+ .+.+||+|+|++|++|+++|||++++ .+++.. +++..+ + .+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l---~~~~~~-g~l~~~----~-~~~ 71 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKI---ISYKEK-GRLEEI----D-YEK 71 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHH---HHHHhc-CccccC----C-CCc
Confidence 389999999999999999987 46899999999999999999999885 444443 555433 1 111
Q ss_pred eCCCCccccccceeecCCCcC
Q 007820 489 YDEAKPWNERCDVAFPCASQN 509 (588)
Q Consensus 489 i~~~eil~~dcDILIPcA~~n 509 (588)
++.++++..++||+|+|+..+
T Consensus 72 ~~~~~ll~~~~DVvVE~t~~~ 92 (326)
T PRK06392 72 IKFDEIFEIKPDVIVDVTPAS 92 (326)
T ss_pred CCHHHHhcCCCCEEEECCCCC
Confidence 233445667999999999654
No 19
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.06 E-value=2e-10 Score=121.31 Aligned_cols=128 Identities=18% Similarity=0.311 Sum_probs=87.7
Q ss_pred cEEEEeccchHHHHHHHHHHH--------CC--CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA--------YG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e--------~G--AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a 486 (588)
.+|+|+||||||+++++.|.+ .| .+|++|+|++|++|||+|||++++ .+++...+++..|...+ +.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l---~~~~~~~~~~~~~~~~~-~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREA---KEVKENFGKLSNWGNDY-EV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHH---HHhhhccCchhhccccc-cc
Confidence 589999999999999999987 46 799999999999999999999875 66777777766552111 11
Q ss_pred eEeCCCCcc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC-C--CC-HHHHHHHHHCCceEe
Q 007820 487 KYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-P--CT-PEAVDVLKKANVLIA 551 (588)
Q Consensus 487 ~~i~~~eil-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~-P--~T-~eA~~iL~~rGI~vi 551 (588)
..++.++++ +.+|||+|.|+... ...+...+.++.++.+|. ||- | .+ .+-.+..+++|+.+.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~~G~~VVt--anK~~la~~~~el~~la~~~~~~~~ 145 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALKEGKSVVT--SNKPPIAFHYDELLDLANERNLPYL 145 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHhhCCcEEE--CCHHHHHhCHHHHHHHHHHcCCeEE
Confidence 222444566 57999999888432 223334444456777764 342 2 22 333455567777666
No 20
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.64 E-value=2.6e-07 Score=78.90 Aligned_cols=55 Identities=31% Similarity=0.337 Sum_probs=49.1
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+||+|++.++++..+..+.++++++++|+|+|++|+.++..|.+.|.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999988889999999999999999999999999986655666654
No 21
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.58 E-value=1.8e-07 Score=99.06 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=87.6
Q ss_pred cEEEEeccchHHHHHHHHHHHC----------CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~----------GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a 486 (588)
.+|+|.|+|+||+.+++.|.+. +.+|++|+|+++.+|+++|+|.+++ .+.+...+.+..| ++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~~----~~~ 75 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLADY----PEG 75 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCcccC----ccc
Confidence 5899999999999999998765 5899999999999999999998775 3444444444333 211
Q ss_pred e-EeCCCCcc-ccccceeecCCCcCccc----hhhHHhhhhcCCeEEEe--cCCCCCCHHHHHHHHHCCceEe
Q 007820 487 K-YYDEAKPW-NERCDVAFPCASQNEID----QSDAINLVNSGCRILVE--GSNMPCTPEAVDVLKKANVLIA 551 (588)
Q Consensus 487 ~-~i~~~eil-~~dcDILIPcA~~n~It----~enA~~l~~~~akiVvE--gAN~P~T~eA~~iL~~rGI~vi 551 (588)
. ..+.++++ +.++||+|.|+..+.-+ .+.+...++.++.+|++ +...-.-++-.+..+++|+.+.
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 1 11223444 46899999999865544 34445556789999984 3322223445566667787665
No 22
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.20 E-value=2.8e-06 Score=90.75 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=63.6
Q ss_pred cEEEEeccchHHHHHHHHHHHC--------C--CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~--------G--AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a 486 (588)
.+|+|.|||+||+.+++.|.+. | .+|++|+|+++.+++++|||.+.+ .+.+.....+.+|.
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~---l~~~~~~~~~~~~~------ 73 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHL---LRYGGGSCAIEKYI------ 73 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhh---hhccccccchhhhh------
Confidence 5899999999999999998753 2 579999999999999999998763 22111111112221
Q ss_pred eEeCCCCcc--ccccceeecCCCcCccchhhHHhh
Q 007820 487 KYYDEAKPW--NERCDVAFPCASQNEIDQSDAINL 519 (588)
Q Consensus 487 ~~i~~~eil--~~dcDILIPcA~~n~It~enA~~l 519 (588)
+ ...+++. ..+.||+|.|+..+..+.+.|...
T Consensus 74 ~-~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~ 107 (346)
T PRK06813 74 E-HHPEERATDNISGTVLVESTVTNLKDGNPGKQY 107 (346)
T ss_pred c-cChHHHhcCCCCCCEEEECCCCccCCchHHHHH
Confidence 0 0111222 237899999998777777777655
No 23
>PLN02700 homoserine dehydrogenase family protein
Probab=98.08 E-value=7.3e-06 Score=88.42 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=47.7
Q ss_pred cEEEEeccchHHHHHHHHHHHC-------C--CeEEEEEcCCCeeeCCC----CCCHHHHHHHHHHhhccCChhhh
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-------G--AIPVSVSDAKGYLVDED----GFDYMKISFLRDIKSQQRSLRDY 479 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-------G--AKVVaVSDs~G~Iydpd----GLDie~L~~L~~~k~~~gsL~~y 479 (588)
..|+|.|+||||+.+++.|.+. | .+|++|+||+|.+++++ |||.+.+......+.+...+..|
T Consensus 4 i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~ 79 (377)
T PLN02700 4 IPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL 79 (377)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence 5799999999999999987652 3 58999999999999975 99988764434344444444443
No 24
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.77 E-value=0.00075 Score=62.25 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhh
Q 007820 401 FFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS 480 (588)
Q Consensus 401 ~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~ 480 (588)
++++.++++.+.++++++|.|.|.|++|..+++.|.+.|...|.+.|+ + .+.+..+.+...... +
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r-----~-----~~~~~~~~~~~~~~~-~---- 68 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR-----T-----LEKAKALAERFGELG-I---- 68 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC-----C-----HHHHHHHHHHHhhcc-c----
Confidence 344555556677789999999999999999999999987555677776 2 222211111100000 0
Q ss_pred hccCCceEeCCCCccccccceeecCCCcCccchhh----HHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccc
Q 007820 481 KTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSD----AINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (588)
Q Consensus 481 ~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~en----A~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~ 554 (588)
.....+..+. -.++|++|-|+.....+.+. ...+ . .-++|.+-+-.|...+..+.++++|+.++|+.
T Consensus 69 ----~~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~-~-~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 69 ----AIAYLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLL-K-PGGVVYDVVYNPLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred ----ceeecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHc-C-CCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence 0011111111 35899999988776541111 1122 2 34566666555543377888999999888753
No 25
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.72 E-value=0.0002 Score=84.44 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHC---------CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc
Q 007820 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY---------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (588)
Q Consensus 402 ~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~---------GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~ 472 (588)
+++.+-+.+-.+-+-.+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++++|||.+.+.........
T Consensus 451 al~~LH~~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~ 530 (819)
T PRK09436 451 ALRACHQSFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGE 530 (819)
T ss_pred HHHHHHHHHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccC
Confidence 3444334443344678999999999999999998753 3579999999999999999998764211110000
Q ss_pred cCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC-CCC------HHHHHHHHH
Q 007820 473 QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-PCT------PEAVDVLKK 545 (588)
Q Consensus 473 ~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~-P~T------~eA~~iL~~ 545 (588)
...+..+. +.+. -...+.||+|.|+....+...- ...++.|+.+|. ||- +.+ +|-.+..++
T Consensus 531 ~~~~~~~~------~~~~---~~~~~~~vvvd~t~~~~~~~~~-~~al~~g~~VVt--aNK~~~a~~~~~~~el~~~a~~ 598 (819)
T PRK09436 531 PFDLDRLI------RLVK---EYHLLNPVIVDCTSSQAVADQY-ADFLAAGFHVVT--PNKKANTSSYAYYHQLREAARK 598 (819)
T ss_pred CCCHHHHH------HHHh---hcCCCCCEEEECCCChHHHHHH-HHHHHcCCEEEc--CCchhccCCHHHHHHHHHHHHH
Confidence 00111110 0000 0134679999999876654433 344566777775 663 333 233344456
Q ss_pred CCceEecc
Q 007820 546 ANVLIAPA 553 (588)
Q Consensus 546 rGI~viPD 553 (588)
+|+.+...
T Consensus 599 ~~~~~~ye 606 (819)
T PRK09436 599 SRRKFLYE 606 (819)
T ss_pred cCCeEEEe
Confidence 77766643
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.66 E-value=0.00047 Score=71.89 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=86.1
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~ 471 (588)
+..|+.|++. .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++| .+.+++ + +++..+ ..
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V-~v~~R~-----~-----~~~~~~---~~ 192 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARV-FVGARS-----S-----ADLARI---TE 192 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEE-EEEeCC-----H-----HHHHHH---HH
Confidence 4567777654 44455667999999999999999999999999999985 566652 1 222111 11
Q ss_pred ccCChhhhhhccCCceEeCCCCc--cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCC-CHHHHHHHHHCCc
Q 007820 472 QQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-TPEAVDVLKKANV 548 (588)
Q Consensus 472 ~~gsL~~y~~~~p~a~~i~~~ei--l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~-T~eA~~iL~~rGI 548 (588)
. +.+.+.-+++ +-.++||+|-|.....++.+....+ + .-.+|+.-|..|- |+= +..+++|+
T Consensus 193 ~------------g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~-k-~~aliIDlas~Pg~tdf--~~Ak~~G~ 256 (287)
T TIGR02853 193 M------------GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKL-P-KHAVIIDLASKPGGTDF--EYAKKRGI 256 (287)
T ss_pred C------------CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcC-C-CCeEEEEeCcCCCCCCH--HHHHHCCC
Confidence 0 1111111111 1248999999988777887766655 2 3457888888773 333 56789998
Q ss_pred eEe-----ccccc
Q 007820 549 LIA-----PAMAA 556 (588)
Q Consensus 549 ~vi-----PD~la 556 (588)
..+ |.+++
T Consensus 257 ~a~~~~glPg~~a 269 (287)
T TIGR02853 257 KALLAPGLPGIVA 269 (287)
T ss_pred EEEEeCCCCcccC
Confidence 766 66664
No 27
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.66 E-value=0.00021 Score=69.10 Aligned_cols=122 Identities=22% Similarity=0.305 Sum_probs=63.8
Q ss_pred HHHHHHHHH-HHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCC
Q 007820 397 YGLVFFAQL-ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (588)
Q Consensus 397 ~GV~~~i~~-~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gs 475 (588)
||+-.++-. +++..+..+.||+++|.|||+||+.+|+.|..+|++ |.|+|. || -++ +....
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~-----DP-----i~a--lqA~~----- 64 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEI-----DP-----IRA--LQAAM----- 64 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-S-----SH-----HHH--HHHHH-----
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEEC-----Ch-----HHH--HHhhh-----
Confidence 444443332 334457789999999999999999999999999999 578887 43 222 22211
Q ss_pred hhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCc
Q 007820 476 LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (588)
Q Consensus 476 L~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI 548 (588)
..| +..+-++. -..+||+|-|+.. ++|+.+.-.+| +.+|- |+...-.+..-+ .+.|++.++
T Consensus 65 -dGf-------~v~~~~~a-~~~adi~vtaTG~~~vi~~e~~~~m-kdgai-l~n~Gh~d~Eid-~~~L~~~~~ 126 (162)
T PF00670_consen 65 -DGF-------EVMTLEEA-LRDADIFVTATGNKDVITGEHFRQM-KDGAI-LANAGHFDVEID-VDALEANAV 126 (162)
T ss_dssp -TT--------EEE-HHHH-TTT-SEEEE-SSSSSSB-HHHHHHS--TTEE-EEESSSSTTSBT-HHHHHTCTS
T ss_pred -cCc-------EecCHHHH-HhhCCEEEECCCCccccCHHHHHHh-cCCeE-EeccCcCceeEe-eccccccCc
Confidence 122 11111111 2378999987654 67899988887 44553 343332222211 234666644
No 28
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.54 E-value=0.0021 Score=64.76 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCCC--CCHHHHHHHHHHh
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAK--VVaVSDs~G~IydpdG--LDie~L~~L~~~k 470 (588)
||-=+..++..+++..+.+++++||+|.|.|.+|..+|+.|.+.|.+ -|.|.|++|-++.... |+..+. .+..
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~-~la~-- 80 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKN-EIAK-- 80 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHH-HHHH--
Confidence 44444556667777778899999999999999999999999999987 7899999987765543 322211 0111
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC 535 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~ 535 (588)
..+. .... .+-.+.+ .++||+|-|+..+.++.+..+.+. .-.+|..-. +|+
T Consensus 81 -~~~~--------~~~~-~~l~~~l-~~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf~ls-nP~ 131 (226)
T cd05311 81 -ETNP--------EKTG-GTLKEAL-KGADVFIGVSRPGVVKKEMIKKMA--KDPIVFALA-NPV 131 (226)
T ss_pred -Hhcc--------Cccc-CCHHHHH-hcCCEEEeCCCCCCCCHHHHHhhC--CCCEEEEeC-CCC
Confidence 0000 0000 0000111 258999999988889988877763 345666666 553
No 29
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.41 E-value=0.0011 Score=69.42 Aligned_cols=126 Identities=15% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~ 471 (588)
+.+|+.| ++.++++..+.++.|++|.|.|+|.+|+.++..|..+|++ |.+.|++ .+++. ....
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~----------~~~~~---~~~~ 193 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARK----------SAHLA---RITE 193 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECC----------HHHHH---HHHH
Confidence 4567777 4445666677889999999999999999999999999997 5566662 12221 1110
Q ss_pred ccCChhhhhhccCCceEeCCCCc--cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCC--CCHHHHHHHHHCC
Q 007820 472 QQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP--CTPEAVDVLKKAN 547 (588)
Q Consensus 472 ~~gsL~~y~~~~p~a~~i~~~ei--l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P--~T~eA~~iL~~rG 547 (588)
. +++++.-+++ +-.++||+|-|+....++.+....+ +.++ +|+.-|..| +.. +.-+++|
T Consensus 194 -~-----------G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~-~~g~-vIIDla~~pggtd~---~~a~~~G 256 (296)
T PRK08306 194 -M-----------GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKM-PPEA-LIIDLASKPGGTDF---EYAEKRG 256 (296)
T ss_pred -c-----------CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcC-CCCc-EEEEEccCCCCcCe---eehhhCC
Confidence 1 1222211111 1237999999887666776665555 3344 555555544 332 2446788
Q ss_pred ceEe
Q 007820 548 VLIA 551 (588)
Q Consensus 548 I~vi 551 (588)
|.++
T Consensus 257 v~~~ 260 (296)
T PRK08306 257 IKAL 260 (296)
T ss_pred eEEE
Confidence 8776
No 30
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00032 Score=74.77 Aligned_cols=112 Identities=19% Similarity=0.127 Sum_probs=74.5
Q ss_pred CcEEEEeccchHHHHHHHHHHHC----------CCeEEEEEcCCCeeeC-CCCCCHHHHHHHHHHhhccCChhhhhhccC
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVD-EDGFDYMKISFLRDIKSQQRSLRDYSKTYA 484 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~----------GAKVVaVSDs~G~Iyd-pdGLDie~L~~L~~~k~~~gsL~~y~~~~p 484 (588)
-.+|.|.|||+||+.++++|.+. ..+|++|+|+++..+. -++.+. . .+...+.+
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~-~------~~~~~~~~-------- 67 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA-E------VWTTDGAL-------- 67 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch-h------hheecccc--------
Confidence 46899999999999999999874 3589999999998874 444332 1 11111111
Q ss_pred CceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceee
Q 007820 485 RSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAG 564 (588)
Q Consensus 485 ~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS 564 (588)
. ...+-++..+.||++++...+.-+.+.+..+ ....++|+.|+ -+|.+.++..
T Consensus 68 --~-~~~~~~~~~~~dvvve~~~~d~~~~~~~~~~---------------------~~al~~GkhVV---TaNK~~lA~~ 120 (333)
T COG0460 68 --S-LGDEVLLDEDIDVVVELVGGDVEPAEPADLY---------------------LKALENGKHVV---TANKALLALH 120 (333)
T ss_pred --c-ccHhhhccccCCEEEecCcccCCchhhHHHH---------------------HHHHHcCCeEE---CCCchHhHhh
Confidence 0 1122345779999999999877766654433 44456677766 5777777776
Q ss_pred ecccc
Q 007820 565 ELELN 569 (588)
Q Consensus 565 ~~E~~ 569 (588)
|.|..
T Consensus 121 ~~el~ 125 (333)
T COG0460 121 YHELR 125 (333)
T ss_pred HHHHH
Confidence 66653
No 31
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=97.28 E-value=0.005 Score=72.06 Aligned_cols=129 Identities=24% Similarity=0.299 Sum_probs=96.4
Q ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCC--CCCHHHHHHH
Q 007820 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFL 466 (588)
Q Consensus 391 r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAK--VVaVSDs~G~Iydpd--GLDie~L~~L 466 (588)
--..||-=+..++..+++-.|.+++..||+|.|.|..|.++|++|...|.+ =+.+.|++|.|+... +++..+.. +
T Consensus 160 D~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~-~ 238 (752)
T PRK07232 160 DQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAA-Y 238 (752)
T ss_pred ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHH-H
Confidence 345688888889999999999999999999999999999999999999983 478999999999854 46654431 1
Q ss_pred HHHhhccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC-C-CCHHH
Q 007820 467 RDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-P-CTPEA 539 (588)
Q Consensus 467 ~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~-P-~T~eA 539 (588)
.. ....++|. +.+. .+||||-++..+.+|++....+. .-.||---||- | +|||-
T Consensus 239 a~-~~~~~~l~---------------~~i~-~~~v~iG~s~~g~~~~~~v~~M~--~~piifalsNP~~E~~p~~ 294 (752)
T PRK07232 239 AV-DTDARTLA---------------EAIE-GADVFLGLSAAGVLTPEMVKSMA--DNPIIFALANPDPEITPEE 294 (752)
T ss_pred hc-cCCCCCHH---------------HHHc-CCCEEEEcCCCCCCCHHHHHHhc--cCCEEEecCCCCccCCHHH
Confidence 10 00111221 1222 37999999999999999999984 56788888885 3 55543
No 32
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=97.26 E-value=0.0039 Score=68.19 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=95.9
Q ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCC--C-CCHHHHHH
Q 007820 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--G-FDYMKISF 465 (588)
Q Consensus 391 r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAK--VVaVSDs~G~Iydpd--G-LDie~L~~ 465 (588)
--.-||-=++.++-.+|+-.|++|+..+|++.|.|..|.+++++|...|.+ =|.++|++|.||+.. . ++..+.
T Consensus 174 DqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~-- 251 (432)
T COG0281 174 DQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKY-- 251 (432)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHH--
Confidence 344688888889999999999999999999999999999999999999986 688999999999743 2 222221
Q ss_pred HHHHhhccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC-C-CCHHHH
Q 007820 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-P-CTPEAV 540 (588)
Q Consensus 466 L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~-P-~T~eA~ 540 (588)
... .+.++ .+.. +.-...+||||-|+..+.+|++-.+.+.++ .+|---||- | .+||..
T Consensus 252 ~~a-~~~~~------------~~~~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~--PiIfalaNP~pEi~Pe~a 311 (432)
T COG0281 252 AKA-IEDTG------------ERTL--DLALAGADVLIGVSGVGAFTEEMVKEMAKH--PIIFALANPTPEITPEDA 311 (432)
T ss_pred HHH-Hhhhc------------cccc--cccccCCCEEEEcCCCCCcCHHHHHHhccC--CEEeecCCCCccCCHHHH
Confidence 000 00000 0110 113468999999999999999999999544 788888884 3 455443
No 33
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=97.24 E-value=0.021 Score=64.97 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHH
Q 007820 322 KSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF 401 (588)
Q Consensus 322 ~S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~ 401 (588)
.+.+|...|...||..+.+-+||..-|-=.|++..- ---|.+.|+. . -.++ .+--+.||-=++.
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~---~-i~~F----------nDDiQGTaaV~lA 306 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRT---T-HLCF----------NDDIQGTAAVALA 306 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhcc---C-CCEe----------ccccchHHHHHHH
Confidence 345678889999999999888998888889998642 2235667742 1 1111 2333567777788
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHH-----CCC------eEEEEEcCCCeeeCCCC--CCHHHHHHHHH
Q 007820 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRD 468 (588)
Q Consensus 402 ~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e-----~GA------KVVaVSDs~G~IydpdG--LDie~L~~L~~ 468 (588)
++.++++-.|.+|+..||+|.|.|..|.++|++|.+ .|. +=+-+.|++|-|++... ++..+......
T Consensus 307 gll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~ 386 (581)
T PLN03129 307 GLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD 386 (581)
T ss_pred HHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh
Confidence 889999988999999999999999999999999987 475 45789999999998553 55443211110
Q ss_pred HhhccCChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhh-cCCeEEEecCCC
Q 007820 469 IKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSNM 533 (588)
Q Consensus 469 ~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~-~~akiVvEgAN~ 533 (588)
....++|.+. +-.++.||||-++. .+.+|++-.+.+.+ +.=.||---+|-
T Consensus 387 -~~~~~~L~e~--------------v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 387 -HEPGASLLEA--------------VKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred -cccCCCHHHH--------------HhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 0001111111 12467899999986 58999999888853 355677777774
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.10 E-value=0.0014 Score=72.15 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~ 471 (588)
.-.||.|++.+++.+. +..+.|++|+|.|+|++|+.+|+.|...|++ |.|+|. ||. +. +.....
T Consensus 191 ~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~-----dp~-----ra--~~A~~~ 254 (425)
T PRK05476 191 RYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEV-----DPI-----CA--LQAAMD 254 (425)
T ss_pred cHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC-----Cch-----hh--HHHHhc
Confidence 3457777766665432 5568999999999999999999999999998 556665 332 11 011010
Q ss_pred ccCChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhhcCCeEEEecC-CCCCCHHHHH
Q 007820 472 QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGS-NMPCTPEAVD 541 (588)
Q Consensus 472 ~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvEgA-N~P~T~eA~~ 541 (588)
+...++-++.+ ..+||+|.|+- .+.|+.+....+ +.++.++.-|. |..+..++-.
T Consensus 255 -------------G~~v~~l~eal-~~aDVVI~aTG~~~vI~~~~~~~m-K~GailiNvG~~d~Eid~~~L~ 311 (425)
T PRK05476 255 -------------GFRVMTMEEAA-ELGDIFVTATGNKDVITAEHMEAM-KDGAILANIGHFDNEIDVAALE 311 (425)
T ss_pred -------------CCEecCHHHHH-hCCCEEEECCCCHHHHHHHHHhcC-CCCCEEEEcCCCCCccChHHHh
Confidence 11111112222 37899999874 345666555554 45665554443 5555555433
No 35
>PRK12861 malic enzyme; Reviewed
Probab=97.06 E-value=0.021 Score=67.12 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHH
Q 007820 328 MRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLIL 407 (588)
Q Consensus 328 ~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l 407 (588)
..|. .|+..+..-+|. |-=.|++.. +--.|-+.|+.-... .++ .+--.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p--~~f~il~~~~~~~~i--pvf----------~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAP--ECFTVERKLRERMKI--PVF----------HDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCc--hHHHHHHHHHhcCCC--Cee----------ccccchHHHHHHHHHHHHH
Confidence 3455 777888765544 566787653 444567777652111 111 2333467777788889999
Q ss_pred HHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCC--CCCHHHHHHHHHHhhccCChhhhhhcc
Q 007820 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLRDIKSQQRSLRDYSKTY 483 (588)
Q Consensus 408 ~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAK--VVaVSDs~G~Iydpd--GLDie~L~~L~~~k~~~gsL~~y~~~~ 483 (588)
+-.|.+++..||+|.|.|..|..+|++|.+.|.+ =+.+.|++|.|+... .++..+.. +.. ....++|.+
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~-~a~-~~~~~~L~e----- 253 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKER-FAQ-ETDARTLAE----- 253 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHH-HHh-hcCCCCHHH-----
Confidence 9999999999999999999999999999999984 368999999999754 36654431 111 111112221
Q ss_pred CCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC-C-CCHH
Q 007820 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-P-CTPE 538 (588)
Q Consensus 484 p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~-P-~T~e 538 (588)
.+. .+||||-++..+.+|++..+.+. +=.||---||- | +|||
T Consensus 254 ----------ai~-~advliG~S~~g~ft~e~v~~Ma--~~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 254 ----------VIG-GADVFLGLSAGGVLKAEMLKAMA--ARPLILALANPTPEIFPE 297 (764)
T ss_pred ----------HHh-cCCEEEEcCCCCCCCHHHHHHhc--cCCEEEECCCCCccCCHH
Confidence 111 36999999999999999999994 46788888885 3 5665
No 36
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.05 E-value=0.0028 Score=74.85 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHC--------C--CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhh
Q 007820 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (588)
Q Consensus 402 ~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~--------G--AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~ 471 (588)
+++.+-+.+-.+-+-.+|+|.||||||+.+++.|.+. | .+|++|+|+++.+++++|+|...+.....-..
T Consensus 444 av~~LH~~f~~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~ 523 (810)
T PRK09466 444 LIQGLHQSLFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEA 523 (810)
T ss_pred HHHHHHHHHhCcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhc
Confidence 3444434433344567899999999999999998753 3 57899999999999999999766421111000
Q ss_pred ccCChhhhhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCC-CC---H---HHHHHHH
Q 007820 472 QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CT---P---EAVDVLK 544 (588)
Q Consensus 472 ~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T---~---eA~~iL~ 544 (588)
....+..+ .+.+.. ...+.+|+|.|.....+...-. ..++.|..+|. ||-. .+ . +-.+.-+
T Consensus 524 ~~~~~~~~------~e~i~~---~~~~~~vvVd~t~~~~~~~~~~-~aL~~G~~VVt--aNK~~~a~~~~~~~~l~~~a~ 591 (810)
T PRK09466 524 VEWDEESL------FLWLRA---HPYDELVVLDVTASEQLALQYP-DFASHGFHVIS--ANKLAGSSPSNFYRQIKDAFA 591 (810)
T ss_pred CCccHHHH------HHHHhh---cCCCCcEEEECCCChHHHHHHH-HHHHcCCEEEc--CCcccccccHHHHHHHHHHHH
Confidence 00011100 000000 1223469999998765543333 33456777765 6642 21 1 2224446
Q ss_pred HCCceEecc
Q 007820 545 KANVLIAPA 553 (588)
Q Consensus 545 ~rGI~viPD 553 (588)
++|+.+...
T Consensus 592 ~~~~~~~yE 600 (810)
T PRK09466 592 KTGRHWLYN 600 (810)
T ss_pred HcCCeEEEe
Confidence 777776643
No 37
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.05 E-value=0.0012 Score=63.58 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=66.0
Q ss_pred hCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe
Q 007820 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (588)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i 489 (588)
.+.++.|+||.|.|+|++|+.+|+.|...|.+|+++.-+ .-+.+. . .. .+.++.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~--------~~~~~~------~-------~~-----~~~~~~ 83 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRS--------PKPEEG------A-------DE-----FGVEYV 83 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESS--------CHHHHH------H-------HH-----TTEEES
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEeccc--------CChhhh------c-------cc-----ccceee
Confidence 356899999999999999999999999999998765433 111000 0 00 012222
Q ss_pred CCCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCce
Q 007820 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL 549 (588)
Q Consensus 490 ~~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI~ 549 (588)
+-++++ ..|||++-+.. .+.|+.+.-.++ +.++ +++--|-+. +..+|- +.|++.-|.
T Consensus 84 ~l~ell-~~aDiv~~~~plt~~T~~li~~~~l~~m-k~ga-~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELL-AQADIVSLHLPLTPETRGLINAEFLAKM-KPGA-VLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHH-HH-SEEEE-SSSSTTTTTSBSHHHHHTS-TTTE-EEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhc-chhhhhhhhhccccccceeeeeeeeecc-ccce-EEEeccchhhhhhhHHHHHHhhccCc
Confidence 112222 36888877655 577777777766 3344 666677776 555554 666665544
No 38
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.98 E-value=0.005 Score=67.55 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChh
Q 007820 398 GLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLR 477 (588)
Q Consensus 398 GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~ 477 (588)
++.+++-+.++..-.+|++++|.|.|+|.+|.-+|+.|.+.|.+-|.|+.. +.++...|..
T Consensus 160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~La~--------- 220 (414)
T COG0373 160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELAK--------- 220 (414)
T ss_pred chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHH---------
Confidence 445555555555556799999999999999999999999999888999877 3444322222
Q ss_pred hhhhccCCceEeCCCCcc--ccccceeecC--CCcCccchhhHHhhhhcCCe-EEEecCCCC
Q 007820 478 DYSKTYARSKYYDEAKPW--NERCDVAFPC--ASQNEIDQSDAINLVNSGCR-ILVEGSNMP 534 (588)
Q Consensus 478 ~y~~~~p~a~~i~~~eil--~~dcDILIPc--A~~n~It~enA~~l~~~~ak-iVvEgAN~P 534 (588)
.+ ++++++-+++. -.++||+|-| |...+|+.++.....+.+.+ +|+.=||-+
T Consensus 221 ----~~-~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 221 ----KL-GAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred ----Hh-CCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 11 23333333333 3599999998 78899999998887665555 899999876
No 39
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.97 E-value=0.0025 Score=70.99 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=67.0
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 396 GYGLVFFA-QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 396 G~GV~~~i-~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
.||+..++ ...++..+..+.|++|+|.|+|+||+.+|+.|...|++| .+.|. ||. .. +....
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~V-iV~e~-----dp~-----~a--~~A~~---- 295 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARV-VVTEI-----DPI-----CA--LQAAM---- 295 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC-----Cch-----hH--HHHHh----
Confidence 44544433 444555678999999999999999999999999999995 45554 221 10 00000
Q ss_pred ChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhhcCCeEEEecC
Q 007820 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 475 sL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvEgA 531 (588)
.+++..+-++++ ..+||+|.|+. .+.|+.+....+ +.+|.+|-=|-
T Consensus 296 ---------~G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~M-KpGAiLINvGr 342 (476)
T PTZ00075 296 ---------EGYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRM-KNNAIVGNIGH 342 (476)
T ss_pred ---------cCceeccHHHHH-hcCCEEEECCCcccccCHHHHhcc-CCCcEEEEcCC
Confidence 012222212222 37899999864 367887777666 55666654433
No 40
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.97 E-value=0.015 Score=60.65 Aligned_cols=133 Identities=12% Similarity=0.027 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
-|+|++.+++. .+.++++++|+|.|.|.+|+.++..|.+.|++-|.|.|.+ .++...|.+.-..
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~~-- 173 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELNA-- 173 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHHh--
Confidence 36777777653 3356889999999999999999999999998668888872 3343333321111
Q ss_pred ChhhhhhccCCceEeCCCCcc--ccccceeecCCCcCccch----hhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCc
Q 007820 475 SLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQNEIDQ----SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (588)
Q Consensus 475 sL~~y~~~~p~a~~i~~~eil--~~dcDILIPcA~~n~It~----enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI 548 (588)
.++.......+++. -.++||+|-|+.-+.-.. -+...| ....+|.+-.-+|....-.+.-+++|.
T Consensus 174 -------~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l--~~~~~v~DivY~P~~T~ll~~A~~~G~ 244 (284)
T PRK12549 174 -------RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELL--RPGLWVADIVYFPLETELLRAARALGC 244 (284)
T ss_pred -------hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHc--CCCcEEEEeeeCCCCCHHHHHHHHCCC
Confidence 11222222212221 247999999865332111 012223 245688898888865555666677777
Q ss_pred eEec
Q 007820 549 LIAP 552 (588)
Q Consensus 549 ~viP 552 (588)
.++.
T Consensus 245 ~~~~ 248 (284)
T PRK12549 245 RTLD 248 (284)
T ss_pred eEec
Confidence 6554
No 41
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.90 E-value=0.0091 Score=64.95 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 403 i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
+-.+.+..+.++.|+||.|+|+||||+.+|+.|...|.+|++.
T Consensus 103 lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~ 145 (381)
T PRK00257 103 LLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC 145 (381)
T ss_pred HHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 3334455678999999999999999999999999999997654
No 42
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.86 E-value=0.014 Score=56.66 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.5
Q ss_pred CCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccch-HHHHHHHHHHHCCCeEEEEEcC
Q 007820 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 389 ~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGN-VG~~aAe~L~e~GAKVVaVSDs 448 (588)
.....+|++.++..++ ....+++|++|+|.|.|. +|..+|+.|.+.|++ |.++++
T Consensus 21 ~~~~p~~~~a~v~l~~----~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r 76 (168)
T cd01080 21 PGFIPCTPAGILELLK----RYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHS 76 (168)
T ss_pred CCccCChHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEEC
Confidence 3455678877766544 445689999999999998 588899999999998 567766
No 43
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.76 E-value=0.046 Score=57.32 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHC----CC------eEEEEEcCCCeeeCCCC-CCHHH
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDEDG-FDYMK 462 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~----GA------KVVaVSDs~G~IydpdG-LDie~ 462 (588)
-||-=+..++..+++-.|.+|+..||+|.|.|..|.++|++|... |. +-+.+.|++|-|++... ++..+
T Consensus 3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~ 82 (279)
T cd05312 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFK 82 (279)
T ss_pred hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHH
Confidence 366667778888899899999999999999999999999999876 87 56789999999998653 44433
Q ss_pred HHHHHHHhh--ccCChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhh-cCCeEEEecCCC
Q 007820 463 ISFLRDIKS--QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSNM 533 (588)
Q Consensus 463 L~~L~~~k~--~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~-~~akiVvEgAN~ 533 (588)
...... .+ ..++|.+. +-.+++||||=++. .+.+|++-.+.+.+ +.=.||---+|-
T Consensus 83 ~~~a~~-~~~~~~~~L~e~--------------i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 83 KPFARK-DEEKEGKSLLEV--------------VKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred HHHHhh-cCcccCCCHHHH--------------HHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 211110 00 00111111 11358899999986 68999999888843 245677777874
No 44
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.73 E-value=0.06 Score=61.18 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHH
Q 007820 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (588)
Q Consensus 323 S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~ 402 (588)
+.+|...|...||..+.+.. |..-|-=.|++.. .--.+.+.|+.-. .++ .+--+-||-=++.+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~--naf~iL~kyr~~i----~~F----------nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNN--HCFDLLERYQNKY----RCF----------NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--cHHHHHHHhccCC----CEe----------cccchhHHHHHHHH
Confidence 56788899999999998765 7776777888763 3334667776421 111 22334577777788
Q ss_pred HHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHH----CCC------eEEEEEcCCCeeeCCCC--CCHHHHHHHHHHh
Q 007820 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (588)
Q Consensus 403 i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e----~GA------KVVaVSDs~G~IydpdG--LDie~L~~L~~~k 470 (588)
+.++++..|.+|+..||++.|.|..|.++|++|.. .|. +=+-+.|++|-|++..+ ++..+.... +
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~ 360 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---R 360 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---c
Confidence 88999989999999999999999999999998874 787 55789999999998653 554442100 0
Q ss_pred hccCChhhhhhccCCceEeCCCCc-cccccceeecCCC-cCccchhhHHhhhh-cCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKP-WNERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~ei-l~~dcDILIPcA~-~n~It~enA~~l~~-~~akiVvEgAN~ 533 (588)
.... .++....+-.+. -.++.||||-++. .+.+|++..+.+.+ +.=.||---+|-
T Consensus 361 ~~~~--------~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 361 TDIS--------AEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP 418 (559)
T ss_pred cccc--------cccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 0000 000000000111 1357799999887 58999998888854 234677777774
No 45
>PRK13529 malate dehydrogenase; Provisional
Probab=96.72 E-value=0.13 Score=58.61 Aligned_cols=187 Identities=17% Similarity=0.188 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHH
Q 007820 322 KSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF 401 (588)
Q Consensus 322 ~S~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~ 401 (588)
.+.+|...|...||..+.+.. |..-|-=.|++.. .--.|.+.|+.-. .++ .+--+-||-=++.
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~i----~~F----------nDDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK--NARRILERYRDEI----CTF----------NDDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--hHHHHHHHhccCC----Cee----------ccccchHHHHHHH
Confidence 345678889999999988665 7666777888753 3334566676411 111 2333457777788
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHH----CCC------eEEEEEcCCCeeeCCCC-CCHHHHHHHHHHh
Q 007820 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG-FDYMKISFLRDIK 470 (588)
Q Consensus 402 ~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e----~GA------KVVaVSDs~G~IydpdG-LDie~L~~L~~~k 470 (588)
++.++++-.|.+|+..||+|.|.|..|.++|++|.+ .|. +-+-+.|++|-|+...+ |+..+.. ....
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~--fa~~ 358 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKP--YARK 358 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHH--Hhhh
Confidence 889999999999999999999999999999999986 687 45789999999998654 4333321 1000
Q ss_pred hccCChhhhhhccCCc-eEeCCCCcc-ccccceeecCCC-cCccchhhHHhhhh-cCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARS-KYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a-~~i~~~eil-~~dcDILIPcA~-~n~It~enA~~l~~-~~akiVvEgAN~ 533 (588)
...+..+ +.. ...+-.++. .++.||||-++. .+.+|++-.+.+.+ +.=.||---+|-
T Consensus 359 --~~~~~~~----~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 359 --REELADW----DTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred --ccccccc----ccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 0001000 000 000001122 357799999998 59999999998854 234677777874
No 46
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.70 E-value=0.015 Score=63.29 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 401 FFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 401 ~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
..+-.+.+..+.++.|+||.|.|+||||+.+|+.|...|.+|++.
T Consensus 101 ~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~ 145 (378)
T PRK15438 101 SSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC 145 (378)
T ss_pred HHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence 333444455678999999999999999999999999999998754
No 47
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.70 E-value=0.0042 Score=68.18 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
||.+++ ..+++..+..+.|++|+|.|+|.+|..+|+.+...|++|+ |+|. ||. ++. ..+. .
T Consensus 184 ~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~-----d~~-----R~~---~A~~-~- 244 (413)
T cd00401 184 CRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEV-----DPI-----CAL---QAAM-E- 244 (413)
T ss_pred hchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEEC-----Chh-----hHH---HHHh-c-
Confidence 444443 4555666778999999999999999999999999999854 5665 332 221 1111 1
Q ss_pred ChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEec
Q 007820 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEG 530 (588)
Q Consensus 475 sL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEg 530 (588)
++..+..++.+ ..+||+|.|+.. ..++.+.... .+.++.+|.=|
T Consensus 245 ----------G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~-mk~GgilvnvG 289 (413)
T cd00401 245 ----------GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQ-MKDGAIVCNIG 289 (413)
T ss_pred ----------CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhc-CCCCcEEEEeC
Confidence 22222112222 368999998753 3455443343 35677776555
No 48
>PRK12862 malic enzyme; Reviewed
Probab=96.67 E-value=0.031 Score=65.84 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=110.3
Q ss_pred cCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchH
Q 007820 348 LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI 427 (588)
Q Consensus 348 VpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNV 427 (588)
|-=.|++. ..--.|-+.|+.-... .++ .+--.-||-=+..++..+++-.|.+++..||+|.|.|..
T Consensus 139 i~~ED~~~--~~~f~i~~~~~~~~~i--p~f----------~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa 204 (763)
T PRK12862 139 INLEDIKA--PECFYIERELRERMKI--PVF----------HDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA 204 (763)
T ss_pred eeeecccC--chHHHHHHHHHhcCCC--ceE----------ecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH
Confidence 45567764 3444566777653211 111 233346787788889999999999999999999999999
Q ss_pred HHHHHHHHHHCCCe--EEEEEcCCCeeeCCC--CCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceee
Q 007820 428 AMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAF 503 (588)
Q Consensus 428 G~~aAe~L~e~GAK--VVaVSDs~G~Iydpd--GLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILI 503 (588)
|.++|++|...|.+ =+.+.|++|.|+... +++..+.. +.. ....++|.+ .+. .+||||
T Consensus 205 g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~-~a~-~~~~~~l~e---------------~~~-~~~v~i 266 (763)
T PRK12862 205 ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKAR-YAQ-KTDARTLAE---------------VIE-GADVFL 266 (763)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHH-Hhh-hcccCCHHH---------------HHc-CCCEEE
Confidence 99999999999983 478999999999854 46654431 111 111112221 222 379999
Q ss_pred cCCCcCccchhhHHhhhhcCCeEEEecCCC-C-CCHHH
Q 007820 504 PCASQNEIDQSDAINLVNSGCRILVEGSNM-P-CTPEA 539 (588)
Q Consensus 504 PcA~~n~It~enA~~l~~~~akiVvEgAN~-P-~T~eA 539 (588)
-++..+.+|++-.+.+. .=.||---||- | +|||-
T Consensus 267 G~s~~g~~~~~~v~~M~--~~piifalsNP~~E~~p~~ 302 (763)
T PRK12862 267 GLSAAGVLKPEMVKKMA--PRPLIFALANPTPEILPEE 302 (763)
T ss_pred EcCCCCCCCHHHHHHhc--cCCEEEeCCCCcccCCHHH
Confidence 99999999999999984 56788888885 3 55543
No 49
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.61 E-value=0.0078 Score=55.69 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~ 491 (588)
.++++++|+|.|.|.+|+.++..|.+.|++-|.|.++ +.+++..|.+... + .....++-
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t~~ra~~l~~~~~--~---------~~~~~~~~ 66 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------TPERAEALAEEFG--G---------VNIEAIPL 66 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------SHHHHHHHHHHHT--G---------CSEEEEEG
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------CHHHHHHHHHHcC--c---------cccceeeH
Confidence 4899999999999999999999999999997888876 3445443433210 0 11223322
Q ss_pred CCcc--ccccceeecCCCcC--ccchhhHHhhhhcCCeEEEecCCCC-CCHH
Q 007820 492 AKPW--NERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMP-CTPE 538 (588)
Q Consensus 492 ~eil--~~dcDILIPcA~~n--~It~enA~~l~~~~akiVvEgAN~P-~T~e 538 (588)
+++. ..++||+|-|+.-. .++.+....... +.++|++-|+-+ ++|+
T Consensus 67 ~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~-~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 67 EDLEEALQEADIVINATPSGMPIITEEMLKKASK-KLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp GGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCH-HCSEEEES-SS-SB-TT
T ss_pred HHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHh-hhhceeccccCCCCChh
Confidence 3332 35899999987654 677776654311 136999999632 4444
No 50
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.58 E-value=0.013 Score=55.66 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=65.6
Q ss_pred cEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccC------Cc---
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA------RS--- 486 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p------~a--- 486 (588)
.+|+|.|||.+|+.+++.+.+ .+..++++.|. .+++.+..|+++-...|.+..-. .+. +.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~---------~~~~~~a~ll~~Ds~hg~~~~~v-~~~~~~l~i~g~~i 70 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL---------TDPETLAHLLKYDSVHGRFPGEV-EVDEDGLIVNGKKI 70 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC---------CCHHHHHHHhcccCCCCCCCCcE-EEeCCEEEECCEEE
Confidence 479999999999999998874 57899998873 24555555554433344432110 000 00
Q ss_pred eEe---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 487 KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 487 ~~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
..+ ++.+ +| ...+||++.| ++.-.+.+.+..-++.|||-|+=+|-
T Consensus 71 ~~~~~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkViisap 120 (149)
T smart00846 71 KVLAERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVIISAP 120 (149)
T ss_pred EEEecCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEEeCCC
Confidence 111 1111 35 4688999999 66667777776666778877776663
No 51
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.017 Score=61.68 Aligned_cols=107 Identities=17% Similarity=0.268 Sum_probs=71.3
Q ss_pred cEEEEeccchHHHHHHHHHHHCC--CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhh------hhccCC--c
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDY------SKTYAR--S 486 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~G--AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y------~~~~p~--a 486 (588)
.||+|-|||-.|+-+++.+.+.+ ..||+|.|. .|++-+..|+.+....|.+..- ...+.+ .
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 48999999999999999999875 899999984 2444555555544333433211 011111 1
Q ss_pred eEe---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhc-CCeEEEecCCC
Q 007820 487 KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNS-GCRILVEGSNM 533 (588)
Q Consensus 487 ~~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~-~akiVvEgAN~ 533 (588)
+.. +++. +| +..+||.+.|+..-. +.+++.+.++. |||-|.-+|=.
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcCCC
Confidence 111 1122 35 567999999998776 89999987766 58888877643
No 52
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.51 E-value=0.025 Score=58.56 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCe----------EEEEEcCCCeeeCCCC-CCHHH
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI----------PVSVSDAKGYLVDEDG-FDYMK 462 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAK----------VVaVSDs~G~IydpdG-LDie~ 462 (588)
-||-=+..++..+++-.|.+|+..||+|.|.|..|.++|++|.+.+.+ =+.+.|++|-|++... ++..+
T Consensus 3 GTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~ 82 (254)
T cd00762 3 GTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNE 82 (254)
T ss_pred hhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHH
Confidence 366666778888888889999999999999999999999999887654 5789999999998653 55433
Q ss_pred HHHHHHHhhccCChhhhhhccCCceEeCCCCcc-ccccceeecCCC-cCccchhhHHhhhh-cCCeEEEecCCC
Q 007820 463 ISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSNM 533 (588)
Q Consensus 463 L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil-~~dcDILIPcA~-~n~It~enA~~l~~-~~akiVvEgAN~ 533 (588)
.. +. +|... .....+-.+.. .++.||||=++. .+.+|++..+.+.+ +.=.||---+|-
T Consensus 83 ~~-~~----------~~~~~--~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 143 (254)
T cd00762 83 YH-LA----------RFANP--ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNP 143 (254)
T ss_pred HH-HH----------HHcCc--ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCc
Confidence 21 11 11100 00000001112 357888888877 78888888888743 234677777774
No 53
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.49 E-value=0.012 Score=60.99 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCCcEEEEeccchHHHHHHHHHHH--CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC-
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD- 490 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e--~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~- 490 (588)
.+.+||.|.|+|++|+..++.|.+ .+..+++|+|. ++ ++...+. .. +......+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr-----~~-----~~a~~~a---~~----------~g~~~~~~~ 60 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-----DP-----QRHADFI---WG----------LRRPPPVVP 60 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC-----CH-----HHHHHHH---Hh----------cCCCcccCC
Confidence 456899999999999999999886 37899989887 32 2221111 11 11111111
Q ss_pred CCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceE-ec
Q 007820 491 EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLI-AP 552 (588)
Q Consensus 491 ~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~v-iP 552 (588)
.++++ .++|+++-|+.... ..+-+...++.+..+|++..-.. ...+..+..+++|+.+ +|
T Consensus 61 ~eell-~~~D~Vvi~tp~~~-h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 61 LDQLA-THADIVVEAAPASV-LRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred HHHHh-cCCCEEEECCCcHH-HHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 23343 36899999997654 46767777788988998742212 1244446667788754 44
No 54
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.45 E-value=0.0033 Score=56.19 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=27.1
Q ss_pred ccchHHHHHHHHHHHC----CCeEEEEEcCCCeeeCCC
Q 007820 423 GSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDED 456 (588)
Q Consensus 423 GfGNVG~~aAe~L~e~----GAKVVaVSDs~G~Iydpd 456 (588)
|+|+||+.+++.|.+. +.+|++|+|++ .+.+++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~ 37 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD 37 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh
Confidence 8999999999999876 68999999998 666655
No 55
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.45 E-value=0.014 Score=59.87 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=73.4
Q ss_pred cEEEEecc-chHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CC
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~e 493 (588)
++|+|.|+ |++|+..++.+.+ .+.++++++|++ ++.... . ..+ +....++ ++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~-----~~~~~~---------~------~~~-----~i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP-----GSPLVG---------Q------GAL-----GVAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----Cccccc---------c------CCC-----CccccCCHHH
Confidence 58999998 9999999998876 479999999983 322110 0 000 1111111 22
Q ss_pred ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHH----HHCCceEeccccc
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKANVLIAPAMAA 556 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~rGI~viPD~la 556 (588)
++. ++|++|-|+..+.. .+.+...++.++.+|++ ....+++..+.| ++.++++.|.+--
T Consensus 57 ll~-~~DvVid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 57 VLA-DADVLIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred hcc-CCCEEEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 333 79999999976665 78888888899999988 445555443333 2357888887643
No 56
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.44 E-value=0.012 Score=62.50 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~ 490 (588)
+.+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+ +.. ... . .+ +..+.+
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~-----~~~---~~~---~----------~~-----~~~~~~ 197 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILY-YSRT-----RKP---EAE---K----------EL-----GAEYRP 197 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCC-----CCh---hhH---H----------Hc-----CCEecC
Confidence 5579999999999999999999999999999754 4542 110 000 0 00 111111
Q ss_pred CCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCc
Q 007820 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANV 548 (588)
Q Consensus 491 ~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI 548 (588)
.+++ -..|||++-|.. .+.|+.+....+ +.++ +++.-|=++ +..+|- +.|++..|
T Consensus 198 l~el-l~~aDiV~l~lP~t~~T~~~i~~~~~~~m-k~ga-~lIN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 198 LEEL-LRESDFVSLHVPLTKETYHMINEERLKLM-KPTA-ILVNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred HHHH-HhhCCEEEEeCCCChHHhhccCHHHHhcC-CCCe-EEEECcCchhcCHHHHHHHHHcCCe
Confidence 1222 237888887765 455666655555 3444 555555554 555554 66655544
No 57
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.41 E-value=0.024 Score=59.81 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
+|.|++|.|.|+|++|+.+|+.|...|.+|+++.-+ . .++|... ...++ +
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~-~---~~~~~~~-----------~~~~l---------------~ 168 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS-Y---VNDGISS-----------IYMEP---------------E 168 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-C---cccCccc-----------ccCCH---------------H
Confidence 689999999999999999999999999998766432 1 1222210 00011 1
Q ss_pred CccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCC-CCCHHH-HHHHHHCCc
Q 007820 493 KPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNM-PCTPEA-VDVLKKANV 548 (588)
Q Consensus 493 eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~-P~T~eA-~~iL~~rGI 548 (588)
++ -..||+++-|.. .+.|+.+.-..+ +.++ +++--+=+ .+..+| .+.|+++.+
T Consensus 169 el-l~~aDiv~~~lp~t~~T~~li~~~~l~~m-k~ga-~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 169 DI-MKKSDFVLISLPLTDETRGMINSKMLSLF-RKGL-AIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred HH-HhhCCEEEECCCCCchhhcCcCHHHHhcC-CCCe-EEEECCCccccCHHHHHHHHHcCCc
Confidence 11 136788877654 456666666655 4455 44444444 455555 466666544
No 58
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.41 E-value=0.019 Score=61.22 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+.+|.||||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d 172 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYD 172 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEC
Confidence 457899999999999999999999999999987653
No 59
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.40 E-value=0.014 Score=55.40 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=65.3
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~ 496 (588)
++|.|.|+|++|+.+|+.|.+.|..| .+.|. +.+++..+.+ . +++..+.-.-+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v-~~~d~----------~~~~~~~~~~---~------------g~~~~~s~~e~~ 55 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEV-TVYDR----------SPEKAEALAE---A------------GAEVADSPAEAA 55 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEE-EEEES----------SHHHHHHHHH---T------------TEEEESSHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeE-Eeecc----------chhhhhhhHH---h------------hhhhhhhhhhHh
Confidence 58999999999999999999999995 45554 3344322221 1 233332222233
Q ss_pred cccceeecCCCcCccchhhHHh--hhh--cCCeEEEecCCC-C-CCHHHHHHHHHCCceEeccc
Q 007820 497 ERCDVAFPCASQNEIDQSDAIN--LVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIAPAM 554 (588)
Q Consensus 497 ~dcDILIPcA~~n~It~enA~~--l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGI~viPD~ 554 (588)
..||+++-|-.......+.... +.. ..=++|++-++. | .+.+..+.+.++|+.|+=.-
T Consensus 56 ~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp HHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 4779888876543332222222 222 356788877775 4 45667788999999887433
No 60
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=96.40 E-value=0.00096 Score=58.71 Aligned_cols=65 Identities=25% Similarity=0.616 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcc-ee-eeeecCCccceeehhhhhh--ccccCCCCCCCcCcccccccc-chhhhhhhHHHHHH
Q 007820 100 KRWREEWADTYK-WA-YVDVKEGTARIFCSVCREY--GRKHRRNPYGNEGSRNMQMSA-LEEHNNSLLHKEAL 167 (588)
Q Consensus 100 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a-l~~h~~~~~h~~a~ 167 (588)
|+-.-.|-+.|+ |+ |-.. .+++||-+|..| |....-+.|.++|-+|+.... +..|..+.+|..|-
T Consensus 3 RrF~~~W~~~~~~WL~YS~~---~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~s~~H~~a~ 72 (90)
T smart00597 3 RRFQRSWFKQFPDWLEYSVE---KDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEVSKRHRNAF 72 (90)
T ss_pred ccccccccccCcchheeecc---cCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcCCHHHHhHH
Confidence 445567888899 98 4433 556999999998 456788899999999999876 99999999999986
No 61
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=96.38 E-value=0.01 Score=56.84 Aligned_cols=108 Identities=17% Similarity=0.282 Sum_probs=67.9
Q ss_pred cEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccC-----C---ce
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----R---SK 487 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p-----~---a~ 487 (588)
.||+|-|||-+|+.+++.+.. ....||+|.|. +.|++.+..|+++-...|++......-. + .+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~--------~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~ 72 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDP--------APDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIK 72 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEES--------SSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecc--------cccchhhhhhhhccccccceecccccccceeEeeccccc
Confidence 389999999999999999884 56799999887 3467777666664444454432211000 0 11
Q ss_pred EeCCC---C-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC
Q 007820 488 YYDEA---K-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 488 ~i~~~---e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.+... + +| +..+||++.|+.. -.+.+++...++.+||-|+=+|-.
T Consensus 73 ~~~~~dp~~i~W~~~gvDiVvEcTG~-f~~~~~~~~hl~~GakkViisap~ 122 (151)
T PF00044_consen 73 VTEERDPEEIPWGELGVDIVVECTGK-FRTRENAEAHLDAGAKKVIISAPS 122 (151)
T ss_dssp EEHTSSGGGSTHHHHTESEEEETSSS-THSHHHHTHHHHTTESEEEESSS-
T ss_pred chhhhhhcccccccccccEEEecccc-ceecccccccccccccceeecccc
Confidence 11111 1 35 5688888888743 346666666667788777766543
No 62
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.36 E-value=0.027 Score=59.43 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=67.1
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~ 491 (588)
.+|.||||.|.|+|++|+.+|+.+...|.+|++. |+.+.- ...++ ++.+-
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~~~~~-~~~~~----------------------------~~~~l 190 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-STSGKN-KNEEY----------------------------ERVSL 190 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CCCccc-cccCc----------------------------eeecH
Confidence 4799999999999999999999999999998765 442210 01111 11111
Q ss_pred CCccccccceeecCC-----CcCccchhhHHhhhhcCCeEEEecCCCC-CCHHH-HHHHHHCCceEecccc
Q 007820 492 AKPWNERCDVAFPCA-----SQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVLIAPAMA 555 (588)
Q Consensus 492 ~eil~~dcDILIPcA-----~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGI~viPD~l 555 (588)
++++ ..|||++-+. +.+.|+.+.-.++ +.++ +++--|=++ +..+| .+.|++..|..+=|..
T Consensus 191 ~ell-~~sDvv~lh~Plt~~T~~li~~~~~~~M-k~~a-~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~ 258 (311)
T PRK08410 191 EELL-KTSDIISIHAPLNEKTKNLIAYKELKLL-KDGA-ILINVGRGGIVNEKDLAKALDEKDIYAGLDVL 258 (311)
T ss_pred HHHh-hcCCEEEEeCCCCchhhcccCHHHHHhC-CCCe-EEEECCCccccCHHHHHHHHHcCCeEEEEecC
Confidence 1111 2567776543 3467777777666 3343 555566666 45544 3667666555334443
No 63
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.36 E-value=0.021 Score=60.37 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+|.||||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 47899999999999999999999999999987654
No 64
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.32 E-value=0.017 Score=63.37 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhcc
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~ 473 (588)
.||.+++.+ +++..+..+.|++|+|.|+|++|..+|+.+...|++|+ |.|. ||. +. +.. .. .
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~-----dp~-----r~--~~A-~~-~ 237 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEV-----DPI-----RA--LEA-AM-D 237 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeC-----Chh-----hH--HHH-Hh-c
Confidence 455544432 33444667999999999999999999999999999954 4554 332 11 011 10 0
Q ss_pred CChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhhcCCeEEEecC-CCCCCHHHH-HHHHH
Q 007820 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGS-NMPCTPEAV-DVLKK 545 (588)
Q Consensus 474 gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvEgA-N~P~T~eA~-~iL~~ 545 (588)
++..++.++.+ ..+||+|.|+- .+.|+.+....+ +.++.++.-|- +..+..++- +.+.+
T Consensus 238 -----------G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~m-K~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 238 -----------GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENM-KDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred -----------CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcC-CCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 12222112222 36899998764 344555544443 56776665444 444555543 33433
No 65
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.27 E-value=0.013 Score=60.29 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=69.5
Q ss_pred cEEEEeccchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC-CCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EAK 493 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~--GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~-~~e 493 (588)
+||.|.|+|++|+..++.|.+. +..+++|+|+ + .++...+.+ . + +....+ .++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~-----~-----~~~a~~~a~---~----------~-~~~~~~~~~e 57 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR-----N-----LEKAENLAS---K----------T-GAKACLSIDE 57 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC-----C-----HHHHHHHHH---h----------c-CCeeECCHHH
Confidence 4899999999999999988875 5788889887 2 222211111 1 1 112222 234
Q ss_pred ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecC----CCCCCHHHHHHHHHCCc-eEecc
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS----NMPCTPEAVDVLKKANV-LIAPA 553 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA----N~P~T~eA~~iL~~rGI-~viPD 553 (588)
++ .++|+++.|+.... ..+-+..+++.+..+|++.. +-+...+..+..+++|+ +++|.
T Consensus 58 ll-~~~DvVvi~a~~~~-~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 58 LV-EDVDLVVECASVNA-VEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred Hh-cCCCEEEEcCChHH-HHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 44 58999999986544 46666777777888888643 22222344456677785 44543
No 66
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.24 E-value=0.028 Score=58.47 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=70.4
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe-CCCCcc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPW 495 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i-~~~eil 495 (588)
++|.|+|+|++|+..|+.|.+.|.+| .+.|. +.+++..+. + . ++... +.+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v-~v~dr----------~~~~~~~~~---~-~-----------g~~~~~~~~e~~ 54 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEV-VGYDR----------NPEAVEALA---E-E-----------GATGADSLEELV 54 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeE-EEEEC----------CHHHHHHHH---H-C-----------CCeecCCHHHHH
Confidence 37999999999999999999999985 45555 123322111 1 1 12211 112222
Q ss_pred cc--ccceeecCCCcCccchhhHHhhh---hcCCeEEEecCCC-C-CCHHHHHHHHHCCceEeccccccccCcee
Q 007820 496 NE--RCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNM-P-CTPEAVDVLKKANVLIAPAMAAGAGGVVA 563 (588)
Q Consensus 496 ~~--dcDILIPcA~~n~It~enA~~l~---~~~akiVvEgAN~-P-~T~eA~~iL~~rGI~viPD~laNAGGViv 563 (588)
.. .+|+++-|........+....+. +.+ .+|+..++. | .+.+..+.++++|+.|+ | +..+||+..
T Consensus 55 ~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~ 126 (301)
T PRK09599 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWG 126 (301)
T ss_pred hhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHH
Confidence 21 36776666554423233222322 223 466666654 5 45566788999999998 6 778888653
No 67
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=96.21 E-value=0.021 Score=61.31 Aligned_cols=106 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred cEEEEeccchHHHHHHHHHHHC----CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------ccCC-
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR- 485 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~----GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~p~- 485 (588)
.||+|.|||-||+.+.+.|.+. ...+|+|-|. .|.+.+..|+++-...|++..-.. .+.+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 4899999999999999999874 4788888764 255666666665554444321100 0111
Q ss_pred -ceEe---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 486 -SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 486 -a~~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
.... ++++ .| +..+||++.|+.. ..+.+-|...++.||+.|.=.|-
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~-~~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGV-YGSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccch-hhhHHHHHHHHHcCCEEEEecCC
Confidence 1122 2222 47 4799999999955 47888888888889988876654
No 68
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.15 E-value=0.025 Score=60.33 Aligned_cols=105 Identities=16% Similarity=0.288 Sum_probs=67.5
Q ss_pred EEEEeccchHHHHHHHHHHHCC----CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------ccC--C
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYA--R 485 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~G----AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~p--~ 485 (588)
||+|.|||.+|+.+++.|.+.+ ..|++|.|.. +.+.+..|+++-...|++..-.. .+. .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~---------~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 71 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA---------DQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC 71 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC---------CHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE
Confidence 5899999999999999998764 7999998751 33344444544333333211000 000 1
Q ss_pred ceEe---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 486 a~~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
.+.. ++++ .| +..+|+++.|+.. ..+.+.|...++.||+.|.-.|-
T Consensus 72 i~v~~~~~p~~~~w~~~gvDiVie~tG~-~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 72 IRVLHSPTPEALPWRALGVDLVLDCTGV-YGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred EEEEEcCChhhccccccCCCEEEEccch-hccHHHHHHHHHcCCeEEEecCC
Confidence 1222 2222 46 4799999999965 47788888888889888877653
No 69
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.12 E-value=0.024 Score=58.68 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHC----CC------eEEEEEcCCCeeeCCC-CCCHHHH
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDED-GFDYMKI 463 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~----GA------KVVaVSDs~G~Iydpd-GLDie~L 463 (588)
||-=++.++-.+++..|.+|+..||+|.|.|..|..+|++|.+. |. +=+.+.|++|-|++.. .++..+.
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~ 83 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKK 83 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhh
Confidence 55556678888889899999999999999999999999999987 98 6689999999999765 3333221
Q ss_pred HHHHHHhhccCChhhhhhcc-CCceEeCCCC-ccccccceeecCC-CcCccchhhHHhhhh-cCCeEEEecCCC
Q 007820 464 SFLRDIKSQQRSLRDYSKTY-ARSKYYDEAK-PWNERCDVAFPCA-SQNEIDQSDAINLVN-SGCRILVEGSNM 533 (588)
Q Consensus 464 ~~L~~~k~~~gsL~~y~~~~-p~a~~i~~~e-il~~dcDILIPcA-~~n~It~enA~~l~~-~~akiVvEgAN~ 533 (588)
.|.+.. +...+.+-.+ +-..+.||||=++ ..+.+|++-.+.+.+ +.-.||---+|-
T Consensus 84 --------------~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 84 --------------PFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp --------------HHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred --------------hhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 111100 0000101011 1235779999998 779999999999854 235688888884
No 70
>PLN02494 adenosylhomocysteinase
Probab=96.10 E-value=0.025 Score=63.13 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhcc
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~ 473 (588)
-||.++ +..+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ +.|. ||. +. +.. ...
T Consensus 235 GtgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~-----dp~-----r~--~eA-~~~- 296 (477)
T PLN02494 235 GCRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEI-----DPI-----CA--LQA-LME- 296 (477)
T ss_pred cccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC-----Cch-----hh--HHH-Hhc-
Confidence 345555 44455556777999999999999999999999999999965 4554 221 11 000 000
Q ss_pred CChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecC-CCCCCHHHHH
Q 007820 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGS-NMPCTPEAVD 541 (588)
Q Consensus 474 gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgA-N~P~T~eA~~ 541 (588)
+...++-++.+ ..+||+|-|+.. +.|+.+.-..+ +.++.+|-=|- +..+..++..
T Consensus 297 -----------G~~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~M-K~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 297 -----------GYQVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKM-KNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred -----------CCeeccHHHHH-hhCCEEEECCCCccchHHHHHhcC-CCCCEEEEcCCCCCccCHHHHh
Confidence 11111111222 368999986553 45677666655 66777766665 5556655543
No 71
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.07 E-value=0.059 Score=50.94 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=71.1
Q ss_pred CccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhh
Q 007820 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (588)
Q Consensus 393 eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~ 471 (588)
..|..|+ .+++++.|.+++|++|+|.| ...||.-+|.+|.+.|+.| .+++++. -|.++
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV-~~~~~~t-------~~l~~--------- 67 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATV-YSCDWKT-------IQLQS--------- 67 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEE-EEeCCCC-------cCHHH---------
Confidence 4565555 45556678999999999999 6789999999999999995 5666522 12211
Q ss_pred ccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceE
Q 007820 472 QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLI 550 (588)
Q Consensus 472 ~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~v 550 (588)
+ -..|||+|-|+.. +.|+.+- ++.++-+|-=|-|. +..+...++.-.|
T Consensus 68 -------~----------------v~~ADIVvsAtg~~~~i~~~~----ikpGa~Vidvg~~~----~~~~~~~~~a~~~ 116 (140)
T cd05212 68 -------K----------------VHDADVVVVGSPKPEKVPTEW----IKPGATVINCSPTK----LSGDDVKESASLY 116 (140)
T ss_pred -------H----------------HhhCCEEEEecCCCCccCHHH----cCCCCEEEEcCCCc----ccchhhHhhceEE
Confidence 1 1377999887765 4455444 35688888767676 2233444444444
Q ss_pred ec
Q 007820 551 AP 552 (588)
Q Consensus 551 iP 552 (588)
.|
T Consensus 117 tP 118 (140)
T cd05212 117 VP 118 (140)
T ss_pred cC
Confidence 44
No 72
>PLN02928 oxidoreductase family protein
Probab=96.06 E-value=0.039 Score=59.19 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~ 490 (588)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |.+.. ++ ... ...++. ..+..+... ...+.+
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~-dr~~~---~~---~~~---~~~~~~--~~~~~~~~~--~~~~~~ 219 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT-RRSWT---SE---PED---GLLIPN--GDVDDLVDE--KGGHED 219 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCCC---hh---hhh---hhcccc--ccccccccc--cCcccC
Confidence 35799999999999999999999999999997654 44210 00 000 000000 000000000 001111
Q ss_pred CCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCce-Eeccc
Q 007820 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL-IAPAM 554 (588)
Q Consensus 491 ~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI~-viPD~ 554 (588)
-+++ -..|||++-|.. .+.|+.+.-.++ +.+| +++.-|=++ +..+|- +.|.+.-|. .+=|.
T Consensus 220 L~el-l~~aDiVvl~lPlt~~T~~li~~~~l~~M-k~ga-~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV 288 (347)
T PLN02928 220 IYEF-AGEADIVVLCCTLTKETAGIVNDEFLSSM-KKGA-LLVNIARGGLLDYDAVLAALESGHLGGLAIDV 288 (347)
T ss_pred HHHH-HhhCCEEEECCCCChHhhcccCHHHHhcC-CCCe-EEEECCCccccCHHHHHHHHHcCCeeEEEEcc
Confidence 1111 236899987754 567777776666 3344 666667776 455554 666555443 33344
No 73
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.00 E-value=0.033 Score=59.81 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhh
Q 007820 399 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD 478 (588)
Q Consensus 399 V~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~ 478 (588)
+.+++..+++.+ .++++++|.|.|.|.+|.-+|+.|.+.|++-|.|+..+-.. ++.+.+ .
T Consensus 158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~-------------~- 217 (338)
T PRK00676 158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV-------------V- 217 (338)
T ss_pred HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh-------------h-
Confidence 444444455555 57999999999999999999999999998778888874311 111110 0
Q ss_pred hhhccCCceEeCCCCccccccceeecC-----CCcCccchhhHHhhhhcCCeEEEecCCCC
Q 007820 479 YSKTYARSKYYDEAKPWNERCDVAFPC-----ASQNEIDQSDAINLVNSGCRILVEGSNMP 534 (588)
Q Consensus 479 y~~~~p~a~~i~~~eil~~dcDILIPc-----A~~n~It~enA~~l~~~~akiVvEgAN~P 534 (588)
.+.+ -+..++||+|-| +..-.|+.+....+ .-++++.-|+-.
T Consensus 218 -------~~~~----~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r~~iDLAvPR 264 (338)
T PRK00676 218 -------REEL----SFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDRIVFDFNVPR 264 (338)
T ss_pred -------hhhh----hcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCcEEEEecCCC
Confidence 0000 012478999954 55677887765554 336888888654
No 74
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.96 E-value=0.17 Score=52.31 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
.+.|.+.++++ ..+.++++++|+|.|.|.+|+.++..|.+.|++-|.|.+++ .+++..+.+.....
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~----------~~~a~~l~~~~~~~- 170 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT----------VERAEELAKLFGAL- 170 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHhhhc-
Confidence 45666555542 24668999999999999999999999999995447777762 23332222211000
Q ss_pred ChhhhhhccCCceE-eCCCCccccccceeecCCCcCccc-----hhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCc
Q 007820 475 SLRDYSKTYARSKY-YDEAKPWNERCDVAFPCASQNEID-----QSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (588)
Q Consensus 475 sL~~y~~~~p~a~~-i~~~eil~~dcDILIPcA~~n~It-----~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI 548 (588)
....+ .+..+. -.++||+|-|+....-. .-+...| ..-.+|++..-.|....-.+.-+++|+
T Consensus 171 ---------~~~~~~~~~~~~-~~~~DivInaTp~g~~~~~~~~~~~~~~l--~~~~~v~DivY~P~~T~ll~~A~~~G~ 238 (278)
T PRK00258 171 ---------GKAELDLELQEE-LADFDLIINATSAGMSGELPLPPLPLSLL--RPGTIVYDMIYGPLPTPFLAWAKAQGA 238 (278)
T ss_pred ---------cceeecccchhc-cccCCEEEECCcCCCCCCCCCCCCCHHHc--CCCCEEEEeecCCCCCHHHHHHHHCcC
Confidence 00111 010111 14789999988765432 1122333 245788999888854455566677887
Q ss_pred eEecc
Q 007820 549 LIAPA 553 (588)
Q Consensus 549 ~viPD 553 (588)
.++.+
T Consensus 239 ~~~~G 243 (278)
T PRK00258 239 RTIDG 243 (278)
T ss_pred eecCC
Confidence 66643
No 75
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.95 E-value=0.021 Score=52.27 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=69.1
Q ss_pred cEEEEecc-chHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CC
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~e 493 (588)
.||+|.|+ |++|+.+++.+.+ .+..++++.|++..- -.|-|+.++ ... .. .+....+. ++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~---~~~----~~--------~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGEL---AGI----GP--------LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHH---CTS----ST---------SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhh---hCc----CC--------cccccchhHHH
Confidence 48999999 9999999999988 789999999985511 134454332 100 00 01111222 22
Q ss_pred ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHH----CCceEecc
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK----ANVLIAPA 553 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~----rGI~viPD 553 (588)
++.. +||+|-++.... ..++++..++.+..+|++=.- .+++..+.|++ -++++.|-
T Consensus 64 ~~~~-~DVvIDfT~p~~-~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 64 LLEE-ADVVIDFTNPDA-VYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp HTTH--SEEEEES-HHH-HHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SS
T ss_pred hccc-CCEEEEcCChHH-hHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCC
Confidence 3444 999999985433 345677777789999986433 25555555554 45566553
No 76
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.95 E-value=0.19 Score=51.55 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
-++|.+.+++. .+...++++++|.|.|.+|+.++..|.+.|++ |.|.+. +.+++..+.+.....+
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~-v~v~~R----------~~~~~~~la~~~~~~~ 164 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCN-VIIANR----------TVSKAEELAERFQRYG 164 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeC----------CHHHHHHHHHHHhhcC
Confidence 46677666543 34567789999999999999999999999986 556665 2233322222111111
Q ss_pred ChhhhhhccCCceEeCCCCccccccceeecCCCcCc---cchh--hHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCce
Q 007820 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNE---IDQS--DAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (588)
Q Consensus 475 sL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~---It~e--nA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~ 549 (588)
....++.++....++||+|-|+.-.. +... +...+ . .-.+|++-.-.|....-.+..+++|+.
T Consensus 165 ----------~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l-~-~~~~v~D~~y~p~~T~ll~~A~~~G~~ 232 (270)
T TIGR00507 165 ----------EIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKL-K-EGMVVYDMVYNPGETPFLAEAKSLGTK 232 (270)
T ss_pred ----------ceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHc-C-CCCEEEEeccCCCCCHHHHHHHHCCCe
Confidence 11112222222247999999887542 2110 12223 2 335888888776433466667888877
Q ss_pred Eec
Q 007820 550 IAP 552 (588)
Q Consensus 550 viP 552 (588)
++.
T Consensus 233 ~vd 235 (270)
T TIGR00507 233 TID 235 (270)
T ss_pred eeC
Confidence 654
No 77
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.94 E-value=0.039 Score=59.09 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=72.1
Q ss_pred cEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------ccCC--ce
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~p~--a~ 487 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|.+..-.. .+.+ ..
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 4899999999999999987654 6899999874 255666667766555555432110 0111 11
Q ss_pred Ee---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 488 ~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
.. ++++ .| +..+||++.|+.. ..+.+.|...++.|||.|.=.|-
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCCCEEEEeCCC
Confidence 22 2222 46 4699999999854 47888888888889988876653
No 78
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.89 E-value=0.066 Score=56.65 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=63.4
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~ 491 (588)
.+|.|+||.|.|+|++|+.+|+.|...|.+|+++ |... ++..+ ...-++.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~~~~-----------~~~~~l~-------------- 192 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----ASVCR-----------EGYTPFE-------------- 192 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----ccccc-----------cccCCHH--------------
Confidence 4689999999999999999999999999998875 3311 00000 0000111
Q ss_pred CCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCce
Q 007820 492 AKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL 549 (588)
Q Consensus 492 ~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI~ 549 (588)
+++ ..|||++-|.. .+.|+.+.-.++ +.+| +++--|=++ +..+|- +.|++..|.
T Consensus 193 -ell-~~sDiv~l~~Plt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 193 -EVL-KQADIVTLHCPLTETTQNLINAETLALM-KPTA-FLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred -HHH-HhCCEEEEcCCCChHHhcccCHHHHHhC-CCCe-EEEECCCccccCHHHHHHHHHcCCcc
Confidence 111 25787776543 466777776666 3344 555555665 455554 666655543
No 79
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.88 E-value=0.041 Score=60.27 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=71.0
Q ss_pred cEEEEeccchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh-------ccCC-
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~-------~~p~- 485 (588)
.+|+|.|||-||+.+.+.|.+. ...|++|-|. .|++.+..|+.+-...|++..-.+ .+.+
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~---------~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk 131 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT---------GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGK 131 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC---------CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCE
Confidence 5999999999999999999876 3588888764 245566666665444444321110 0111
Q ss_pred -ceEeC---CCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 486 -SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 486 -a~~i~---~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
..... +++ .| +..+||++.|+.. ..+.+.|...++.|||.|.=.|-
T Consensus 132 ~I~v~~~~dp~~~~w~~~gvDiVie~TG~-f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 132 VIKVVSDRNPLNLPWGELGIDLVIEGTGV-FVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred EEEEEEcCCcccccccccCCCEEEECcch-hhhHHHHHHHHHCCCEEEEeCCC
Confidence 11222 222 46 4799999999854 47888888888889998877663
No 80
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.86 E-value=0.027 Score=61.52 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=81.9
Q ss_pred cEEEEeccchHHHHHHHHHHHCC-CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC--
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK-- 493 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~G-AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e-- 493 (588)
++|+|.|.|+||+.+|.+|.+.| .. |.|+|. +.+++.++.... .+.++ +..++-..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdR----------s~~~~~~i~~~~--~~~v~--------~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADR----------SKEKCARIAELI--GGKVE--------ALQVDAADVD 60 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeC----------CHHHHHHHHhhc--cccce--------eEEecccChH
Confidence 58999999999999999999999 56 678887 233433232211 11121 11122111
Q ss_pred -c--cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccccccccCceeeecc
Q 007820 494 -P--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELE 567 (588)
Q Consensus 494 -i--l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~laNAGGVivS~~E 567 (588)
+ +-.+.|++|-|+... ++..-++..++.|..+|-=.-+-+..-+-++...++||+++|+. --+-|++..+..
T Consensus 61 al~~li~~~d~VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~ 135 (389)
T COG1748 61 ALVALIKDFDLVINAAPPF-VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAA 135 (389)
T ss_pred HHHHHHhcCCEEEEeCCch-hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHH
Confidence 1 123559999999765 45566666677788876554444454566788899999999985 445566655443
No 81
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.85 E-value=0.039 Score=58.07 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccch-HHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGN-VG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..||+.. +++.+.++.|++|+|.|-++ ||.-+|.+|...||. |++++++. + |+
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vtv~hs~T----~---~l---------- 201 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNAT-VSVCHVFT----D---DL---------- 201 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCE-EEEEeccC----C---CH----------
Confidence 46898887655 45568899999999999998 999999999999998 57777621 0 11
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.++ ...+||+|-|+. .+.|+.+. ++.++-+|=-|-|.
T Consensus 202 ------~~~----------------~~~ADIvv~AvG~p~~i~~~~----vk~gavVIDvGin~ 239 (287)
T PRK14176 202 ------KKY----------------TLDADILVVATGVKHLIKADM----VKEGAVIFDVGITK 239 (287)
T ss_pred ------HHH----------------HhhCCEEEEccCCccccCHHH----cCCCcEEEEecccc
Confidence 111 136788887665 36666553 34577776666663
No 82
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.81 E-value=0.042 Score=58.99 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=71.0
Q ss_pred cEEEEeccchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------ccCC--
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR-- 485 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~p~-- 485 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|++..-.. .+.+
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 4899999999999999987754 5789999764 256666667766555555421110 0111
Q ss_pred ceEe---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 486 a~~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
.... ++++ .| +..+|+++.|+. ...+.+.|...++.||+.|.=.|
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG-~f~s~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTG-VFVTKEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccc-hhhhHHHHHHHhhCCcEEEEeCC
Confidence 1111 1222 47 469999999985 45788888887788999988776
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.80 E-value=0.078 Score=55.77 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=64.9
Q ss_pred HHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhc
Q 007820 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT 482 (588)
Q Consensus 403 i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~ 482 (588)
++.+...++ ++.|++|+|.|+|.+|..+++.|...|++.|.|+|. +.++...+.. .
T Consensus 166 v~~a~~~~~-~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r----------~~~ra~~la~---~---------- 221 (311)
T cd05213 166 VELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR----------TYERAEELAK---E---------- 221 (311)
T ss_pred HHHHHHHhC-CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC----------CHHHHHHHHH---H----------
Confidence 444444344 389999999999999999999999988877888877 2233211211 1
Q ss_pred cCCceEeCCCCcc--ccccceeecCCCcCccchhhHHhhhhc---CCeEEEecCCCC-CCHH
Q 007820 483 YARSKYYDEAKPW--NERCDVAFPCASQNEIDQSDAINLVNS---GCRILVEGSNMP-CTPE 538 (588)
Q Consensus 483 ~p~a~~i~~~eil--~~dcDILIPcA~~n~It~enA~~l~~~---~akiVvEgAN~P-~T~e 538 (588)
+ ++..++.+++. -.++||+|-|+..... .+....+.+. +-++|+.-||-+ +.|+
T Consensus 222 ~-g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 222 L-GGNAVPLDELLELLNEADVVISATGAPHY-AKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred c-CCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 1 11111111111 1368999999876655 2222222211 346888888643 4444
No 84
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.76 E-value=0.051 Score=58.37 Aligned_cols=107 Identities=16% Similarity=0.265 Sum_probs=72.0
Q ss_pred cEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhh-hhh-------ccCC--
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD-YSK-------TYAR-- 485 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~-y~~-------~~p~-- 485 (588)
.||+|.|||.+|+..++.+.+ .+..+|+|.|.. .|.+.+..|+++-...|++.. -.. .+.+
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~--------~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~ 77 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF--------ITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 77 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC--------CCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEE
Confidence 599999999999999998876 478999998862 245566566655444555532 000 0111
Q ss_pred ceEeC---CCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 486 SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 486 a~~i~---~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
..... +++ .| +..+||++.|+. ...+.+.|...++.||+.|.=.|.
T Consensus 78 i~v~~~~~p~~~~w~~~gvDiVie~tG-~~~s~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 78 VTVFGIRNPEDIPWGEAGADFVVESTG-VFTDKDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred EEEEEcCCcccCcccccCCCEEEEccc-chhhHHHHHHHHHCCCEEEEeCCC
Confidence 11111 112 36 468999999985 458888888888899988876654
No 85
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.74 E-value=0.06 Score=52.07 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=38.5
Q ss_pred CCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccc-hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 390 LRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 390 ~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfG-NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.-..+|..|++..+ +..+.+++||+|+|.|-+ .||.-++.+|.+.||. |+++++
T Consensus 14 ~~~PcTp~aii~lL----~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~ 68 (160)
T PF02882_consen 14 GFVPCTPLAIIELL----EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHS 68 (160)
T ss_dssp SS--HHHHHHHHHH----HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-T
T ss_pred CCcCCCHHHHHHHH----HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccC
Confidence 34457888876554 456889999999999976 5999999999999999 577776
No 86
>PLN03139 formate dehydrogenase; Provisional
Probab=95.68 E-value=0.046 Score=59.67 Aligned_cols=110 Identities=16% Similarity=0.292 Sum_probs=66.7
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~ 490 (588)
+.+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|. ...+.+.. . . -++.+.+
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~-------~~~~~~~~---~----~-----------~g~~~~~ 247 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDR-------LKMDPELE---K----E-----------TGAKFEE 247 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECC-------CCcchhhH---h----h-----------cCceecC
Confidence 4579999999999999999999999999999764 444 22222110 0 0 0122221
Q ss_pred C-CCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCce
Q 007820 491 E-AKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL 549 (588)
Q Consensus 491 ~-~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI~ 549 (588)
. ++++ ..|||++-|.. .+.|+.+....+ +.++ +++.-|=++ +..+|. +.|++.-|.
T Consensus 248 ~l~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 248 DLDAML-PKCDVVVINTPLTEKTRGMFNKERIAKM-KKGV-LIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred CHHHHH-hhCCEEEEeCCCCHHHHHHhCHHHHhhC-CCCe-EEEECCCCchhhHHHHHHHHHcCCce
Confidence 1 2222 46898887655 355655555554 3344 666666665 555554 666665553
No 87
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.64 E-value=0.075 Score=57.03 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=71.7
Q ss_pred cEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------ccCC--ce
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~p~--a~ 487 (588)
.+|+|.|||.+|+.+.+.+.+. ...++++-|. ..|.+.+..|+++-...|++..-.. .+.+ .+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~--------~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP--------AGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 5899999999999999997764 5788888763 2466666667766555555422110 1111 11
Q ss_pred Ee---CCCC-ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 488 YY---DEAK-PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 488 ~i---~~~e-il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
.. ++++ .|. .+|+++.|+.. ..+.+-|...++.||+.|.=.|-
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCCCEEEEECCC
Confidence 22 2222 477 99999999854 57888888888899988876554
No 88
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.63 E-value=0.056 Score=58.53 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhcc
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~ 473 (588)
-||.+.+-++..+ .+.-+.||.++|-|||-||+..|..|..+||+ |.|.+. || +.+|+.+++
T Consensus 190 GtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~-ViVtEv-----DP----I~AleA~Md----- 251 (420)
T COG0499 190 GTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR-VIVTEV-----DP----IRALEAAMD----- 251 (420)
T ss_pred ccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCe-EEEEec-----Cc----hHHHHHhhc-----
Confidence 3666666555544 34558999999999999999999999999999 567765 43 223322221
Q ss_pred CChhhhhhccCCceEeCCCCccccccceeecCCC-cCccchhhHHhhhhcCCeEEEec--CCCCCCHHHHH
Q 007820 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEG--SNMPCTPEAVD 541 (588)
Q Consensus 474 gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvEg--AN~P~T~eA~~ 541 (588)
|.+..+-++. ....||||-|+. .++|+.+....+ +.+| ||+.. .|+-+..++.+
T Consensus 252 -----------Gf~V~~m~~A-a~~gDifiT~TGnkdVi~~eh~~~M-kDga-Il~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 252 -----------GFRVMTMEEA-AKTGDIFVTATGNKDVIRKEHFEKM-KDGA-ILANAGHFDVEIDVAGLE 308 (420)
T ss_pred -----------CcEEEEhHHh-hhcCCEEEEccCCcCccCHHHHHhc-cCCe-EEecccccceeccHHHHH
Confidence 2222221111 235699999876 489999998887 3344 33322 34445555533
No 89
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=95.62 E-value=0.052 Score=58.05 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=69.4
Q ss_pred EEEEeccchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhh-------hccCCc-
Q 007820 418 RCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS-------KTYARS- 486 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~---GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~-------~~~p~a- 486 (588)
||+|-|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-...|.+..-. -.+.+-
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~ 71 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKF 71 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeE
Confidence 689999999999999998765 5789999864 35666666666554445432111 011111
Q ss_pred --eEe---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 487 --KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 487 --~~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
... ++++ .| +..+|+++.|+.. ..+.+.|...++.|||.|.=.|
T Consensus 72 ~i~v~~~~dp~~~~w~~~gvDiVle~tG~-~~s~~~a~~hl~~Gak~V~iSa 122 (327)
T TIGR01534 72 VIVVASERDPSDLPWKALGVDIVIECTGK-FRDKEKLEGHLEAGAKKVLISA 122 (327)
T ss_pred EEEEEecCCcccCchhhcCCCEEEEccch-hhcHHHHHHHhhCCCEEEEeCC
Confidence 112 2222 46 4689999999854 4788888888888998886654
No 90
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.60 E-value=0.053 Score=58.27 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=71.6
Q ss_pred cEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccC-----Cce---
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----RSK--- 487 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p-----~a~--- 487 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. ..|.+.+..|+++-...|++..-...-. +.+
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~--------~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDP--------FMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCC--------CCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 5899999999999999987754 6899999774 1355555556555444454421110000 111
Q ss_pred Ee---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 488 ~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
.. ++.+ +| +..+|+++.|+.. ..+.+.|...++.||+.|.=.|.
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSap 123 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSAP 123 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCCC
Confidence 11 1222 47 5799999999854 48888888888899999988873
No 91
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.58 E-value=0.018 Score=53.53 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=57.3
Q ss_pred CcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCcc
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil 495 (588)
..||.|+|.|+||.++++.|.+.|..|++|... ++ +... ....+ .+.....+..++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr-----s~-----~sa~----------~a~~~---~~~~~~~~~~~~- 65 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR-----SP-----ASAE----------RAAAF---IGAGAILDLEEI- 65 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC-----HH------HHH----------HHHC-----TT-----TTGG-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC-----Cc-----cccc----------ccccc---cccccccccccc-
Confidence 469999999999999999999999999888765 11 1110 01111 122223333333
Q ss_pred ccccceeecCCCcCccchhhHHhhhhc----CCeEEEecCCCCCCHHHHHHHHHCCceE
Q 007820 496 NERCDVAFPCASQNEIDQSDAINLVNS----GCRILVEGSNMPCTPEAVDVLKKANVLI 550 (588)
Q Consensus 496 ~~dcDILIPcA~~n~It~enA~~l~~~----~akiVvEgAN~P~T~eA~~iL~~rGI~v 550 (588)
..++||++-|..-+.|. +-++.|.+. .=++|+=-+ +-.+.+.-+-++++|..+
T Consensus 66 ~~~aDlv~iavpDdaI~-~va~~La~~~~~~~g~iVvHtS-Ga~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 66 LRDADLVFIAVPDDAIA-EVAEQLAQYGAWRPGQIVVHTS-GALGSDVLAPARERGAIV 122 (127)
T ss_dssp GCC-SEEEE-S-CCHHH-HHHHHHHCC--S-TT-EEEES--SS--GGGGHHHHHTT-EE
T ss_pred cccCCEEEEEechHHHH-HHHHHHHHhccCCCCcEEEECC-CCChHHhhhhHHHCCCeE
Confidence 34899999998888774 445666432 224444321 223344445566666654
No 92
>PRK07574 formate dehydrogenase; Provisional
Probab=95.52 E-value=0.057 Score=58.91 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=67.4
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC-
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD- 490 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~- 490 (588)
.+|.|++|.|.|+|++|+.+|+.|...|.+|++. |. ...+.+.. . . .++++..
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~-dr-------~~~~~~~~---~----------~-----~g~~~~~~ 241 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT-DR-------HRLPEEVE---Q----------E-----LGLTYHVS 241 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------CCCchhhH---h----------h-----cCceecCC
Confidence 4689999999999999999999999999997643 43 22221110 0 0 0122111
Q ss_pred CCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHH-HHHHHHCCce
Q 007820 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL 549 (588)
Q Consensus 491 ~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGI~ 549 (588)
.+++ -..|||++-|.. ++.|+++....+ +.++ +++.-|-++ +..+| .+.|++..|.
T Consensus 242 l~el-l~~aDvV~l~lPlt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 242 FDSL-VSVCDVVTIHCPLHPETEHLFDADVLSRM-KRGS-YLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHH-hhcCCEEEEcCCCCHHHHHHhCHHHHhcC-CCCc-EEEECCCCchhhHHHHHHHHHhCCcc
Confidence 1222 247899887765 466666666665 4454 666677776 44444 3677766554
No 93
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.50 E-value=0.24 Score=51.56 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHHhC--CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc
Q 007820 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g--~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~ 472 (588)
-++|.+.+++. .+ .+++|++|+|.|.|.+|+.++..|.++|++-|.|.++ +.++...|.+....
T Consensus 106 D~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------t~~ka~~La~~~~~ 171 (282)
T TIGR01809 106 DWDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------NPDKLSRLVDLGVQ 171 (282)
T ss_pred CHHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhhh
Confidence 36677766653 34 2588999999999999999999999999877888876 23443333332111
Q ss_pred cCChhhhhhccCCceEeCC-CCc--cccccceeecCCCcCc-cchhhHHhh----h---hcCCeEEEecCCCCCCHHHHH
Q 007820 473 QRSLRDYSKTYARSKYYDE-AKP--WNERCDVAFPCASQNE-IDQSDAINL----V---NSGCRILVEGSNMPCTPEAVD 541 (588)
Q Consensus 473 ~gsL~~y~~~~p~a~~i~~-~ei--l~~dcDILIPcA~~n~-It~enA~~l----~---~~~akiVvEgAN~P~T~eA~~ 541 (588)
... ...++. +++ ...++||+|-|+.-+. ++.+..... . ..+..+|.+....|....-.+
T Consensus 172 ~~~----------~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~ 241 (282)
T TIGR01809 172 VGV----------ITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVA 241 (282)
T ss_pred cCc----------ceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHH
Confidence 111 111111 111 1147899999876433 333221110 0 013467888887774433444
Q ss_pred HHHHCCceEe
Q 007820 542 VLKKANVLIA 551 (588)
Q Consensus 542 iL~~rGI~vi 551 (588)
.-+++|..++
T Consensus 242 ~A~~~G~~~~ 251 (282)
T TIGR01809 242 IVSAAGWRVI 251 (282)
T ss_pred HHHHCCCEEE
Confidence 4455555544
No 94
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.46 E-value=0.076 Score=57.23 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=72.2
Q ss_pred cEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh------ccCC--ce
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~------~~p~--a~ 487 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|.+..-.. .+.+ ..
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 4899999999999999987754 5789999764 366677667766555555421110 0111 11
Q ss_pred Ee---CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 488 ~i---~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
.. ++++ .| +..+|+++.|+.. ..+.+.|...++.||+.|.=.|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcCCeEEEeCC
Confidence 22 2333 47 4699999999854 4788888888888999988775
No 95
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.42 E-value=0.05 Score=52.79 Aligned_cols=54 Identities=33% Similarity=0.281 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-|++-.+..++..++..|.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R 60 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GR 60 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence 4777778888888888899999999999996 999999999999999886544 44
No 96
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.41 E-value=0.1 Score=54.90 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..|++.. |++.+.+++||+|+|.| +..||.-+|.+|.+.||. |++++++- + |+
T Consensus 139 ~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vt~chs~T----~---~l---------- 196 (284)
T PRK14177 139 LPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNAT-VTLCHSKT----Q---NL---------- 196 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC----C---CH----------
Confidence 46799888764 55668899999999999 677999999999999998 67887621 0 11
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.++ ...+||+|-|+.. +.|+.+.. +.+|-+|=-|-|-
T Consensus 197 ------~~~----------------~~~ADIvIsAvGk~~~i~~~~i----k~gavVIDvGin~ 234 (284)
T PRK14177 197 ------PSI----------------VRQADIIVGAVGKPEFIKADWI----SEGAVLLDAGYNP 234 (284)
T ss_pred ------HHH----------------HhhCCEEEEeCCCcCccCHHHc----CCCCEEEEecCcc
Confidence 111 1367888877664 66665553 4588777667664
No 97
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.069 Score=55.95 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=43.8
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccch-HHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGN-VG~~aAe~L~e~GAKVVaVSDs 448 (588)
...|-+|++..++ +.+.+++|++|+|.|.|+ ||..+|..|.+.|+. |+|+++
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 3577777766554 568899999999999998 999999999999995 788876
No 98
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.33 E-value=0.071 Score=58.83 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=69.2
Q ss_pred cEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh-------ccCC--c
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR--S 486 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~-------~~p~--a 486 (588)
.||.|-|||-+|+.+++.+.+ .+..||+|-|.. .|.+.+..|+++-...|.+..-.+ .+.+ .
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 689999987642 355666666666555555432111 0111 1
Q ss_pred eEe---CCC-Cccc-cccceeecCCCcCccchhhHHhhhhcCC-eEEEec
Q 007820 487 KYY---DEA-KPWN-ERCDVAFPCASQNEIDQSDAINLVNSGC-RILVEG 530 (588)
Q Consensus 487 ~~i---~~~-eil~-~dcDILIPcA~~n~It~enA~~l~~~~a-kiVvEg 530 (588)
... +++ ..|. ..+||++.|+.. ..+.+.|...++.|| |+|+.+
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGAkkVVIda 206 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGAKKVVISA 206 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCCCEEEECC
Confidence 112 222 2464 589999999854 478888887778888 444443
No 99
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.29 E-value=0.087 Score=55.44 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=42.9
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchH-HHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI-AMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNV-G~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..|++. +|++.+.+++||+|+|.|.|++ |.-+|.+|.+.|+.| +++.+
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV-t~~hs 190 (285)
T PRK14189 138 RPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATV-TICHS 190 (285)
T ss_pred cCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEE-EEecC
Confidence 4688888765 4566789999999999999887 999999999999995 55554
No 100
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.043 Score=57.67 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=44.1
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccch-HHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGN-VG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..|++..+ ++.+.+++|++|+|.|.|+ ||..+|.+|.+.|++ |+++++
T Consensus 138 ~PcTp~ai~~ll----~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s 190 (286)
T PRK14175 138 VPCTPLGIMEIL----KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHS 190 (286)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeC
Confidence 468988876554 5568899999999999999 999999999999999 567766
No 101
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.13 E-value=0.088 Score=54.93 Aligned_cols=130 Identities=17% Similarity=0.105 Sum_probs=78.4
Q ss_pred cEEEEeccchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC-CC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~-~~ 492 (588)
.||.|.|+|++|+.+++.|... +..+++|.|+ ++ ++...+. + ....++ -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-----~~-----~~~~~~~----------~------~~~~~~~l~ 56 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-----AA-----DLPPALA----------G------RVALLDGLP 56 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-----CH-----HHHHHhh----------c------cCcccCCHH
Confidence 6899999999999999998653 3678888877 22 1111010 0 011222 23
Q ss_pred CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHH----HHC-CceEeccc-------cc--cc
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKA-NVLIAPAM-------AA--GA 558 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~r-GI~viPD~-------la--NA 558 (588)
+++..++|++++||....+ .+-+..+++.++.+|+-.-=.-..++-.+.| ++. +-+|+|.= +. ..
T Consensus 57 ~ll~~~~DlVVE~A~~~av-~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~aa~~ 135 (267)
T PRK13301 57 GLLAWRPDLVVEAAGQQAI-AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVAG 135 (267)
T ss_pred HHhhcCCCEEEECCCHHHH-HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHHHhhc
Confidence 4556789999999988776 4556777788888888653333333333333 333 35777732 22 23
Q ss_pred cCceeeecccccccc
Q 007820 559 GGVVAGELELNQECN 573 (588)
Q Consensus 559 GGVivS~~E~~qN~~ 573 (588)
||+...-+...++..
T Consensus 136 ~~~~~v~~~t~K~P~ 150 (267)
T PRK13301 136 RDDAEVVYESRKPVA 150 (267)
T ss_pred cCceEEEEEEecChh
Confidence 555554455555444
No 102
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.13 E-value=0.12 Score=58.38 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~ 490 (588)
|.+|.||||.|.|+|++|+.+|+.|...|.+|++. |. . .+.+.. . ++ +.++.+
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~-------~-~~~~~~---~----------~~-----g~~~~~ 185 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DP-------Y-ISPERA---E----------QL-----GVELVD 185 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------C-CChhHH---H----------hc-----CCEEcC
Confidence 45799999999999999999999999999997654 33 2 111110 0 00 122221
Q ss_pred C-CCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCce
Q 007820 491 E-AKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL 549 (588)
Q Consensus 491 ~-~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI~ 549 (588)
. ++++ ..||+++-|.. .+.|+.+.-..+ +.+| +++.-|=++ +..+|- +.|++..|.
T Consensus 186 ~l~ell-~~aDvV~l~lPlt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 186 DLDELL-ARADFITVHTPLTPETRGLIGAEELAKM-KKGV-IIVNCARGGIIDEAALYEALEEGHVR 249 (525)
T ss_pred CHHHHH-hhCCEEEEccCCChhhccCcCHHHHhcC-CCCe-EEEEcCCCceeCHHHHHHHHHcCCee
Confidence 1 2222 37888876544 566776666554 4455 555555555 555554 677766664
No 103
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=95.09 E-value=0.093 Score=58.19 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=71.7
Q ss_pred cEEEEeccchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh-------ccCC-
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~-------~~p~- 485 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-...|++..-.+ .+.+
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk 146 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGK 146 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCE
Confidence 6999999999999999987643 5789999774 355666666665555555432111 0111
Q ss_pred -ceEeCC----CCcc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 486 -SKYYDE----AKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 486 -a~~i~~----~eil-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
...... +-.| +..+||+|.|+. ...+.+.|...++.|||.|.=.|
T Consensus 147 ~I~V~~~~dp~~l~W~~~gVDiViE~TG-~f~s~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 147 PIKVVSNRDPLKLPWAELGIDIVIEGTG-VFVDGPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred EEEEEEcCCchhCChhhcCCCEEEEccC-hhhhHHHHHHHHhCCCEEEEECC
Confidence 111111 2246 479999999984 45788888888889999998775
No 104
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.08 E-value=0.52 Score=49.44 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCC
Q 007820 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (588)
Q Consensus 396 G~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gs 475 (588)
|+|.+.+++ ..+.+++|++|+|.|.|..++.++-.|...|++-|.|.++ +++. .++...|.+....
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR-----t~~~--~~ka~~la~~~~~--- 173 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR-----RDEF--FDKALAFAQRVNE--- 173 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC-----CccH--HHHHHHHHHHhhh---
Confidence 667666665 4567899999999999999999999999999877888887 3321 2233333321111
Q ss_pred hhhhhhccC-CceEeCCCC---cc--ccccceeecCCCcCccc---h---hhHHhhhhcCCeEEEecCCCCCCHHHHHHH
Q 007820 476 LRDYSKTYA-RSKYYDEAK---PW--NERCDVAFPCASQNEID---Q---SDAINLVNSGCRILVEGSNMPCTPEAVDVL 543 (588)
Q Consensus 476 L~~y~~~~p-~a~~i~~~e---il--~~dcDILIPcA~~n~It---~---enA~~l~~~~akiVvEgAN~P~T~eA~~iL 543 (588)
.++ .....+.++ +. ..++||+|-|+.-+.-. . .+...+ ..-.+|.+-.-.|..-.-.+.-
T Consensus 174 ------~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l--~~~~~v~D~vY~P~~T~ll~~A 245 (288)
T PRK12749 174 ------NTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLL--HPGLLVTECVYNPHMTKLLQQA 245 (288)
T ss_pred ------ccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHC--CCCCEEEEecCCCccCHHHHHH
Confidence 010 011111111 11 13689999887644321 1 111222 1356788888888544445555
Q ss_pred HHCCceEec
Q 007820 544 KKANVLIAP 552 (588)
Q Consensus 544 ~~rGI~viP 552 (588)
+++|..+++
T Consensus 246 ~~~G~~~~~ 254 (288)
T PRK12749 246 QQAGCKTID 254 (288)
T ss_pred HHCCCeEEC
Confidence 666665554
No 105
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.12 Score=54.56 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=43.6
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+ ++|++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++.+
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vt~chs 192 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCT-VTTVHS 192 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCE-EEEeCC
Confidence 357888876 4556678999999999999 567899999999999999 577776
No 106
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.97 E-value=0.33 Score=54.31 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
-|+|.+.+++ ..+.++++++++|.|.|.+|+.++..|.+.|+.| .+.+. +.+++..+.+.. ..
T Consensus 315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V-~i~~R----------~~~~~~~la~~~--~~ 377 (477)
T PRK09310 315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAEL-LIFNR----------TKAHAEALASRC--QG 377 (477)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEE-EEEeC----------CHHHHHHHHHHh--cc
Confidence 4677766664 4567889999999999999999999999999975 45554 223332222110 00
Q ss_pred ChhhhhhccCCceEeCCCCcc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceEec
Q 007820 475 SLRDYSKTYARSKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAP 552 (588)
Q Consensus 475 sL~~y~~~~p~a~~i~~~eil-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~viP 552 (588)
. .++.+++- ..++||+|-|..-+..-. ..+ . .+|.+-.-+| .|+ -.+..+++|+.++
T Consensus 378 ~------------~~~~~~~~~l~~~DiVInatP~g~~~~---~~l---~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~- 436 (477)
T PRK09310 378 K------------AFPLESLPELHRIDIIINCLPPSVTIP---KAF---P-PCVVDINTLPKHSP-YTQYARSQGSSII- 436 (477)
T ss_pred c------------eechhHhcccCCCCEEEEcCCCCCcch---hHH---h-hhEEeccCCCCCCH-HHHHHHHCcCEEE-
Confidence 0 01101110 137899998876553211 123 2 4888988777 454 4456667665554
Q ss_pred cccccccCceeeecccc--cc-cccCCCCHHHHHhhhc
Q 007820 553 AMAAGAGGVVAGELELN--QE-CNMVHWSPEDFESKLQ 587 (588)
Q Consensus 553 D~laNAGGVivS~~E~~--qN-~~~~~ws~eeV~~~L~ 587 (588)
.++||+ |- .+-..|+..+..++|+
T Consensus 437 -----------~G~~Ml~~Qa~~~f~lw~g~~~~~~~~ 463 (477)
T PRK09310 437 -----------YGYEMFAEQALLQFRLWFPTLLFKHLE 463 (477)
T ss_pred -----------CcHHHHHHHHHHHHHHHcCCcccHHHH
Confidence 455654 22 2223477666666654
No 107
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.96 E-value=0.063 Score=47.31 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=70.8
Q ss_pred cEEEEeccchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~--GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~e 493 (588)
.||+|+|+|+.|+.-...+.+. +.++++|+|. +.+..... .+. + +...+++ ++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------~~~~~~~~---~~~----------~-~~~~~~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------DPERAEAF---AEK----------Y-GIPVYTDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------SHHHHHHH---HHH----------T-TSEEESSHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------CHHHHHHH---HHH----------h-cccchhHHHH
Confidence 3899999999999888777665 6799999987 23332111 111 1 2222332 34
Q ss_pred ccc-cccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHH---HHHHHCCceEe
Q 007820 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV---DVLKKANVLIA 551 (588)
Q Consensus 494 il~-~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~---~iL~~rGI~vi 551 (588)
+++ .++|+++=|+. +..+.+.+..+++.+..+++|=-=.....++. +..+++|+.+.
T Consensus 57 ll~~~~~D~V~I~tp-~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 57 LLADEDVDAVIIATP-PSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHTTESEEEEESS-GGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHhhcCCEEEEecC-CcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 554 57999998775 45688888888899999999942222223343 44467776654
No 108
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.91 E-value=0.18 Score=53.48 Aligned_cols=52 Identities=25% Similarity=0.269 Sum_probs=43.7
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+
T Consensus 147 ~PcTp~avi~lL----~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT-Vtvchs 199 (299)
T PLN02516 147 LPCTPKGCLELL----SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT-VTVVHS 199 (299)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 468998876554 4568899999999999 567899999999999998 678776
No 109
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.91 E-value=0.078 Score=64.36 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=78.7
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCC-Ce------------EEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhh
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYG-AI------------PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS 480 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~G-AK------------VVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~ 480 (588)
.+.++|+|.|.|.||+..|+.|.+.. +. +|+|+|. + .+++..+.+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-----~-----~~~a~~la~------------ 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-----Y-----LKDAKETVE------------ 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-----C-----HHHHHHHHH------------
Confidence 34679999999999999999998753 33 5788887 2 223221211
Q ss_pred hccCCc---eE-eCC-CCccc--cccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEecc
Q 007820 481 KTYARS---KY-YDE-AKPWN--ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPA 553 (588)
Q Consensus 481 ~~~p~a---~~-i~~-~eil~--~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD 553 (588)
.+|++ .. +++ +++.. .++|++|-|+.. ..+.+.|..-++.|+.+|+|.-..+.+.+.++..+++|+.++|+
T Consensus 625 -~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e 702 (1042)
T PLN02819 625 -GIENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCE 702 (1042)
T ss_pred -hcCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 11221 11 222 33433 479999988765 57888888888899999999833333344456778899998886
Q ss_pred cc
Q 007820 554 MA 555 (588)
Q Consensus 554 ~l 555 (588)
.-
T Consensus 703 ~G 704 (1042)
T PLN02819 703 MG 704 (1042)
T ss_pred Cc
Confidence 53
No 110
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.65 Score=48.90 Aligned_cols=133 Identities=15% Similarity=0.098 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCC
Q 007820 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (588)
Q Consensus 396 G~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gs 475 (588)
|+|++..+++.. .+.+.+|++|+|.|.|-.+++++..|.+.|++=|.|.++ +.++...|.+.....+.
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------TRERAEELADLFGELGA 175 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------CHHHHHHHHHHhhhccc
Confidence 566655544321 125678999999999999999999999999865677766 34444444433222211
Q ss_pred hhhhhhccCCceEeCCCCcccc-ccceeecCCCcCccchh-----hHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCce
Q 007820 476 LRDYSKTYARSKYYDEAKPWNE-RCDVAFPCASQNEIDQS-----DAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (588)
Q Consensus 476 L~~y~~~~p~a~~i~~~eil~~-dcDILIPcA~~n~It~e-----nA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~ 549 (588)
........++-.. ++||+|-|+.-+.-..+ ++..| .+..+|.+---+|..-.-.+.-+++|..
T Consensus 176 ---------~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l--~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 176 ---------AVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELL--PKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred ---------ccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhc--CcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 0011111111122 69999998765433321 12333 3788999999998544455666777766
Q ss_pred Ee
Q 007820 550 IA 551 (588)
Q Consensus 550 vi 551 (588)
++
T Consensus 245 ~i 246 (283)
T COG0169 245 TI 246 (283)
T ss_pred EE
Confidence 44
No 111
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.84 E-value=0.23 Score=52.37 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=83.8
Q ss_pred cCCcccc-cCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCC
Q 007820 379 TGPRIFW-SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDED 456 (588)
Q Consensus 379 TGKp~~~-GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~Iydpd 456 (588)
||.|+.+ -|.....--||=.-..+++.+ . ....++|.|.|.|..|+..++.+.. .+.+-|.|.+.
T Consensus 92 tG~p~ai~d~~~lT~~RTaa~sala~~~L----a-~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------- 158 (314)
T PRK06141 92 TGEPLALVDGTELTARRTAAASALAASYL----A-RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------- 158 (314)
T ss_pred CCCEEEEEcCcchhcchhHHHHHHHHHHh----C-CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC--------
Confidence 5555543 233322233443333344433 2 2367899999999999999986665 56555667665
Q ss_pred CCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CCccccccceeecCCCcC--ccchhhHHhhhhcCCeEEEecCCC
Q 007820 457 GFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 457 GLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~eil~~dcDILIPcA~~n--~It~enA~~l~~~~akiVvEgAN~ 533 (588)
+.++...+.+.....+ ......+. ++. -.+|||++-|+... .++.+ . ++.++-|.+=|++.
T Consensus 159 --s~~~a~~~a~~~~~~g---------~~~~~~~~~~~a-v~~aDIVi~aT~s~~pvl~~~---~-l~~g~~i~~ig~~~ 222 (314)
T PRK06141 159 --DPAKAEALAAELRAQG---------FDAEVVTDLEAA-VRQADIISCATLSTEPLVRGE---W-LKPGTHLDLVGNFT 222 (314)
T ss_pred --CHHHHHHHHHHHHhcC---------CceEEeCCHHHH-HhcCCEEEEeeCCCCCEecHH---H-cCCCCEEEeeCCCC
Confidence 2334332332111111 01222211 111 14899997666543 23332 2 35688888999999
Q ss_pred CCCHHHHHHHHHCCceEecc
Q 007820 534 PCTPEAVDVLKKANVLIAPA 553 (588)
Q Consensus 534 P~T~eA~~iL~~rGI~viPD 553 (588)
|...|....+.+++..|+=|
T Consensus 223 ~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 223 PDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred cccccCCHHHHhcCcEEEcC
Confidence 99999888788888777644
No 112
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.83 E-value=0.046 Score=60.10 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=67.4
Q ss_pred CcEEEEeccchHHHHHHHHHHHC----------CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCC
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR 485 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~----------GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~ 485 (588)
-.+|+|.|+|+||+.+++.|.+. +.+|++|+|++..-. .+++. ++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~~-----------------------~~ 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVDL-----------------------PG 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCCC-----------------------cc
Confidence 36899999999999999888653 468999999842211 11110 11
Q ss_pred ceEeC-CCCcc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCC-CCHHH---HHHHHHCCceEe
Q 007820 486 SKYYD-EAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA---VDVLKKANVLIA 551 (588)
Q Consensus 486 a~~i~-~~eil-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA---~~iL~~rGI~vi 551 (588)
..+.+ .++++ +.+.||++.|........+-+...++.|..+|++ |-+ ...++ .+..+++|+.+.
T Consensus 58 ~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 58 ILLTTDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred cceeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEE
Confidence 11111 13344 4579999999866555566665666788888875 322 22222 344467787554
No 113
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.80 E-value=0.086 Score=58.04 Aligned_cols=50 Identities=10% Similarity=0.222 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 399 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 399 V~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|.+++-...+..-.++.|++|+|.|.|.+|..+++.|.+.|++-|.|+..
T Consensus 164 v~~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 164 VAFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred HHHHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 33333333333334689999999999999999999999999887889887
No 114
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.77 E-value=0.17 Score=53.86 Aligned_cols=109 Identities=12% Similarity=0.215 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~-e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i 489 (588)
+.+|.|+||.|.|+|++|+.+|+.|. ..|.+|++ .|... +.+.. . .+ +.++.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~-~~~~~--------~~~~~---~----------~~-----~~~~~ 192 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY-NARRH--------HKEAE---E----------RF-----NARYC 192 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE-ECCCC--------chhhH---H----------hc-----CcEec
Confidence 45799999999999999999999997 89999764 34310 00000 0 00 12222
Q ss_pred CCCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCce
Q 007820 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL 549 (588)
Q Consensus 490 ~~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI~ 549 (588)
+-+++ -..|||++-+.. .+.|+.+.-.++ +.+| +++--|-++ +..+|- +.|++.-|.
T Consensus 193 ~l~el-l~~sDvv~lh~plt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 193 DLDTL-LQESDFVCIILPLTDETHHLFGAEQFAKM-KSSA-IFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred CHHHH-HHhCCEEEEeCCCChHHhhccCHHHHhcC-CCCe-EEEECCCccccCHHHHHHHHHcCCee
Confidence 11222 247788876544 356666666665 3343 666677777 444443 666665553
No 115
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.77 E-value=0.17 Score=54.87 Aligned_cols=95 Identities=25% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHH
Q 007820 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (588)
Q Consensus 391 r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~ 469 (588)
-..+|..||+ ++|++.+.+++||+|+|+| +.-||.-+|.+|.+.+|. |+++.++- + |+
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT-VTicHs~T----~---nl--------- 268 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT----K---NP--------- 268 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe-EEEeCCCC----C---CH---------
Confidence 3468988875 4556678999999999999 577999999999999998 57776521 0 11
Q ss_pred hhccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 470 k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.++ ...+||+|-|+.. +.|+.+.. +.+|-+|==|-|-
T Consensus 269 -------~~~----------------~r~ADIVIsAvGkp~~i~~d~v----K~GAvVIDVGIn~ 306 (364)
T PLN02616 269 -------EEI----------------TREADIIISAVGQPNMVRGSWI----KPGAVVIDVGINP 306 (364)
T ss_pred -------HHH----------------HhhCCEEEEcCCCcCcCCHHHc----CCCCEEEeccccc
Confidence 111 1367888887764 66666553 4477666555553
No 116
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.74 E-value=0.14 Score=53.69 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=66.3
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..|++.. |++.+.+++||+|+|.| +..||.-++.+|.+.||. |++++++. -|+
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~At-Vt~chs~T-------~~l---------- 195 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENAT-VTICHSKT-------KNL---------- 195 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCCCC-------CCH----------
Confidence 45788887654 55668899999999999 677999999999999998 67887621 122
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.++ ...+||+|-|+.. +.|+.+.. +.+|-+|=-|-|-
T Consensus 196 ------~~~----------------~~~ADIvIsAvGkp~~i~~~~i----k~gavVIDvGin~ 233 (278)
T PRK14172 196 ------KEV----------------CKKADILVVAIGRPKFIDEEYV----KEGAIVIDVGTSS 233 (278)
T ss_pred ------HHH----------------HhhCCEEEEcCCCcCccCHHHc----CCCcEEEEeeccc
Confidence 111 1367888887764 66666653 4476666555554
No 117
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.70 E-value=0.21 Score=54.75 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
++.|++|+|.|+|.+|..+++.|...|+.-|.|.+. +.++...+.. ..+ ...++.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r----------s~~ra~~la~---~~g-----------~~~i~~~ 232 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR----------TYERAEDLAK---ELG-----------GEAVKFE 232 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC----------CHHHHHHHHH---HcC-----------CeEeeHH
Confidence 589999999999999999999999999655667766 2222211111 101 1111111
Q ss_pred Ccc--ccccceeecCCC--cCccchhhHHhhhhc--CCeEEEecCCCC-CCHHH
Q 007820 493 KPW--NERCDVAFPCAS--QNEIDQSDAINLVNS--GCRILVEGSNMP-CTPEA 539 (588)
Q Consensus 493 eil--~~dcDILIPcA~--~n~It~enA~~l~~~--~akiVvEgAN~P-~T~eA 539 (588)
++. -..+||+|-|+. ...|+.+........ +..+|+.-|+-. +.|+.
T Consensus 233 ~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 233 DLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 111 137999999954 566787776654322 234888888532 55544
No 118
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.67 E-value=0.22 Score=50.81 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+.++|+|.|.|.||+++|+.|.+.|..=+.+.|.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 57889999999999999999999999866777775
No 119
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.67 E-value=0.033 Score=49.24 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=30.5
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++|++|+|.|.|+||..-++.|.+.||+|.-||..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 689999999999999999999999999998777655
No 120
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.66 E-value=0.12 Score=58.55 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~ 490 (588)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |. .. +.+.. . . .+.++.+
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~-------~~-~~~~~---~----------~-----~g~~~~~ 187 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY-DP-------YI-SPERA---A----------Q-----LGVELVS 187 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------CC-ChhHH---H----------h-----cCCEEEc
Confidence 45789999999999999999999999999997654 32 21 11110 0 0 0222222
Q ss_pred CCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHHH-HHHHHCCc
Q 007820 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANV 548 (588)
Q Consensus 491 ~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGI 548 (588)
-++++ ..||+++-|.. .+.|+.+....+ +.++ +++.-|-++ +..+|- +.|++.-|
T Consensus 188 l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~m-k~ga-~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 188 LDELL-ARADFITLHTPLTPETRGLIGAEELAKM-KPGV-RIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred HHHHH-hhCCEEEEccCCChHhhcCcCHHHHhcC-CCCe-EEEECCCCceeCHHHHHHHHhcCCe
Confidence 22233 36788866544 356666655554 4455 444555554 555554 66665554
No 121
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=94.63 E-value=0.15 Score=54.68 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=65.5
Q ss_pred CcEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
..||+|.|+||+|+..++.+.+. +..+|+|.|.+ + .+++ . . .+..| .......
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-----~----~~~~---~---~---~~~v~--------~~~d~~e 56 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-----G----AETL---D---T---ETPVY--------AVADDEK 56 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-----c----HHHH---h---h---cCCcc--------ccCCHHH
Confidence 46999999999999999988765 78999999983 2 1121 1 0 01111 1111122
Q ss_pred cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHH
Q 007820 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLK 544 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~ 544 (588)
+..++|+++-|+ .+..+.+.+..+++.+.-+|.+--.-..-|+..+.|.
T Consensus 57 ~l~~iDVViIct-Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld 105 (324)
T TIGR01921 57 HLDDVDVLILCM-GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMD 105 (324)
T ss_pred hccCCCEEEEcC-CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHH
Confidence 336799999995 4556788888888888999998431112345554443
No 122
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.60 E-value=0.14 Score=50.77 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 5788999999999999999999999998667888864
No 123
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.24 Score=52.16 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=43.6
Q ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 391 r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-..+|..|++.. |++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+
T Consensus 135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vtichs 188 (282)
T PRK14169 135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDAT-VTIAHS 188 (282)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEECC
Confidence 356898887655 45568899999999999 567899999999999998 567765
No 124
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.57 E-value=0.33 Score=50.65 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=66.9
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~ 496 (588)
++|.|.|+|++|..+|+.|.+.|..|+ +.|. +.+++..+.+ . +. ..+ . +..++.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr----------~~~~~~~l~~---~-g~-~~~----~-----s~~~~~~ 55 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDH----------DQDAVKAMKE---D-RT-TGV----A-----NLRELSQ 55 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHHH---c-CC-ccc----C-----CHHHHHh
Confidence 379999999999999999999999864 4555 3334322221 1 10 000 0 0111111
Q ss_pred --cccceeecCCCcCccchhhHHhhhh--cCCeEEEecCCC--CCCHHHHHHHHHCCceEec
Q 007820 497 --ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM--PCTPEAVDVLKKANVLIAP 552 (588)
Q Consensus 497 --~dcDILIPcA~~n~It~enA~~l~~--~~akiVvEgAN~--P~T~eA~~iL~~rGI~viP 552 (588)
..+|+++-|.... ...+-.+.|.. ..=++|+...|. ..|.+..+.+.++|+.|+-
T Consensus 56 ~~~~~dvIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 56 RLSAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred hcCCCCEEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 3579988776655 33333333321 122688888887 3667777889999998874
No 125
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.50 E-value=0.17 Score=53.22 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=66.2
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..||+.. |++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.++. -|+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vtichs~T-------~~l---------- 194 (284)
T PRK14170 137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENAT-VTIAHSRT-------KDL---------- 194 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC-------CCH----------
Confidence 46888877654 45678999999999999 566899999999999998 57776621 111
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.++ ...+||+|-|+.. +.|+.+.. +.+|-+|=-|-|-
T Consensus 195 ------~~~----------------~~~ADIvI~AvG~~~~i~~~~v----k~GavVIDvGin~ 232 (284)
T PRK14170 195 ------PQV----------------AKEADILVVATGLAKFVKKDYI----KPGAIVIDVGMDR 232 (284)
T ss_pred ------HHH----------------HhhCCEEEEecCCcCccCHHHc----CCCCEEEEccCcc
Confidence 111 1367888887764 66666553 4477666666664
No 126
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.49 E-value=0.2 Score=53.12 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=42.6
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..|++. +|++.+.+++||+|+|.| +.-||.-+|.+|.+.||. |+++.+
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at-Vtv~hs 190 (297)
T PRK14186 138 RSCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT-VTIAHS 190 (297)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 3588887765 456668999999999999 567899999999999998 566665
No 127
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.47 E-value=0.11 Score=53.42 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=68.0
Q ss_pred cEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CCc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~ei 494 (588)
+||+|.|+|++|+..++.|.+. +..+++|++. +.. .++. ... +. .+....++ +++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~-----~~~---~~~~---~~~------~~------~~~~~~~d~~~l 58 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP-----EHS---IDAV---RRA------LG------EAVRVVSSVDAL 58 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc-----CCC---HHHH---hhh------hc------cCCeeeCCHHHh
Confidence 4899999999999999998875 6788888754 111 1111 000 00 01122222 233
Q ss_pred cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCC----HHHHHHHHHCCce-Eec
Q 007820 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT----PEAVDVLKKANVL-IAP 552 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T----~eA~~iL~~rGI~-viP 552 (588)
..++|+++.|+... ...+.+...++.|+.+|++-.=.... ++-.+..+++|+. ++|
T Consensus 59 -~~~~DvVve~t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~ 119 (265)
T PRK13303 59 -PQRPDLVVECAGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLL 119 (265)
T ss_pred -ccCCCEEEECCCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56799999999876 44788888889999999963211111 2233455667754 443
No 128
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.47 E-value=0.77 Score=48.11 Aligned_cols=132 Identities=16% Similarity=0.046 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
-|+|.+.+++. .+.++++++|+|.|.|-+|++++-.|.+.|++-|.|.++ +.++...|.+....
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------~~~ka~~La~~~~~-- 173 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------DTSRAQALADVINN-- 173 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------CHHHHHHHHHHHhh--
Confidence 36777777653 334678999999999999999999999999987888876 23443333332110
Q ss_pred ChhhhhhccCC--ceEeCCCCc--cccccceeecCCCcCccch----hhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHC
Q 007820 475 SLRDYSKTYAR--SKYYDEAKP--WNERCDVAFPCASQNEIDQ----SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKA 546 (588)
Q Consensus 475 sL~~y~~~~p~--a~~i~~~ei--l~~dcDILIPcA~~n~It~----enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~r 546 (588)
.++. ....+...+ ....+||+|-|+.-+.-.. -+...+ ....+|.+-.-.|....-.+.-+++
T Consensus 174 -------~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l--~~~~~v~D~vY~P~~T~ll~~A~~~ 244 (283)
T PRK14027 174 -------AVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCL--TKDHWVGDVVYMPIETELLKAARAL 244 (283)
T ss_pred -------ccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHc--CCCcEEEEcccCCCCCHHHHHHHHC
Confidence 1111 011110000 1136899998876432111 111223 2456888888888544445555666
Q ss_pred CceEe
Q 007820 547 NVLIA 551 (588)
Q Consensus 547 GI~vi 551 (588)
|..++
T Consensus 245 G~~~~ 249 (283)
T PRK14027 245 GCETL 249 (283)
T ss_pred CCEEE
Confidence 65544
No 129
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.44 E-value=0.28 Score=50.71 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=71.9
Q ss_pred cEEEEec-cchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CC
Q 007820 417 LRCVVSG-SGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (588)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~e 493 (588)
.||+|.| +|.+|+.+++.+.+ .+..++++.|+...- ..|-|..++ . + ... .+....++ ++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~--~~~~~~~~~---~------~-~~~-----~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSS--LQGTDAGEL---A------G-IGK-----VGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--ccCCCHHHh---c------C-cCc-----CCceeeCCHHH
Confidence 4899999 79999999998876 689999999942210 013333221 0 0 000 01222222 12
Q ss_pred ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHH----HHCC--ceEeccc
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKAN--VLIAPAM 554 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~rG--I~viPD~ 554 (588)
+ ..++|++|-|+ ......+.+...++.++.+|+|=- ..|++..+.| +++| +++.|-+
T Consensus 65 l-~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 65 V-ETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT--GFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred h-cCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 2 35689999998 445567788888888999999875 4565544333 4434 4554543
No 130
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.42 E-value=0.15 Score=52.55 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=61.4
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCcccc
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNE 497 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~ 497 (588)
+|.|.|+|++|+.+|..|.+.|..|+ +.|. + .+++..+.. .+ ....+...-.-.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr-------~---~~~~~~~~~----~g-----------~~~~~~~~~~~~ 54 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTI-------G---PEVADELLA----AG-----------AVTAETARQVTE 54 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcC-------C---HHHHHHHHH----CC-----------CcccCCHHHHHh
Confidence 48899999999999999999999864 5454 2 233321211 11 111111111224
Q ss_pred ccceeecCCCcCccchhhH---Hhhhh--cCCeEEEecCCC-CC-CHHHHHHHHHCCceEec
Q 007820 498 RCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSNM-PC-TPEAVDVLKKANVLIAP 552 (588)
Q Consensus 498 dcDILIPcA~~n~It~enA---~~l~~--~~akiVvEgAN~-P~-T~eA~~iL~~rGI~viP 552 (588)
+||++|-|........... ..+.. ..-++|+.-++. |. +.+..+.+.++|+.++-
T Consensus 55 ~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 55 QADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred cCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 8999999876542221111 11111 133577766554 32 23456778889987765
No 131
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.41 E-value=0.19 Score=52.86 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=66.1
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.++- + |
T Consensus 137 ~PcTp~avi~lL----~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vt~chs~T----~---n----------- 193 (282)
T PRK14166 137 LPCTPLGVMKLL----KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHIKT----K---D----------- 193 (282)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC----C---C-----------
Confidence 468988886654 4568899999999999 567899999999999999 56777621 1 1
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
+.++ ...+||+|-|+.. +.|+.+. ++.+|-+|=-|-|-
T Consensus 194 -----l~~~----------------~~~ADIvIsAvGkp~~i~~~~----vk~GavVIDvGin~ 232 (282)
T PRK14166 194 -----LSLY----------------TRQADLIIVAAGCVNLLRSDM----VKEGVIVVDVGINR 232 (282)
T ss_pred -----HHHH----------------HhhCCEEEEcCCCcCccCHHH----cCCCCEEEEecccc
Confidence 1111 1367888888764 6666654 34477666666553
No 132
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.39 E-value=0.21 Score=52.70 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 391 r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-..+|..||+.. |++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+
T Consensus 134 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vtichs 187 (287)
T PRK14173 134 LEPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDAT-VTLAHS 187 (287)
T ss_pred CCCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEeCC
Confidence 346898887655 45678999999999999 677999999999999998 567765
No 133
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.33 E-value=0.14 Score=46.21 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=59.2
Q ss_pred EEEEec-cchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCC-CCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 418 RCVVSG-SGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDE-DGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 418 rVaIQG-fGNVG~~aAe~L~e~-GAKVVaVSDs~G~Iydp-dGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
||+|.| .|.||+.++++|.+. ...++.+..+ .+ .|..+... . .....+ .+....+ ...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~-----~~~~g~~~~~~------~---~~~~~~----~~~~~~~-~~~ 61 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS-----SRSAGKPLSEV------F---PHPKGF----EDLSVED-ADP 61 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES-----TTTTTSBHHHT------T---GGGTTT----EEEBEEE-TSG
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee-----ccccCCeeehh------c---cccccc----cceeEee-cch
Confidence 799999 999999999999884 4677777776 33 56554332 0 011111 1111111 111
Q ss_pred c-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC
Q 007820 495 W-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 495 l-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
- -.++||+|-|. ......+.++.+++.+|++|==++..
T Consensus 62 ~~~~~~Dvvf~a~-~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 62 EELSDVDVVFLAL-PHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHTTESEEEE-S-CHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred hHhhcCCEEEecC-chhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 1 15999999986 45556777788888888776555444
No 134
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.33 E-value=0.3 Score=53.59 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=63.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
++.|++|+|.|.|.+|+.+++.|...|+.-|.|++. +.+++..+.. ..+ +..++.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r----------~~~ra~~la~---~~g-----------~~~~~~~ 234 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR----------TLERAEELAE---EFG-----------GEAIPLD 234 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC----------CHHHHHHHHH---HcC-----------CcEeeHH
Confidence 689999999999999999999999999865677766 2223211211 111 1111111
Q ss_pred Ccc--ccccceeecCCC--cCccchhhHHhhhh---cCCeEEEecCCCC-CCHH
Q 007820 493 KPW--NERCDVAFPCAS--QNEIDQSDAINLVN---SGCRILVEGSNMP-CTPE 538 (588)
Q Consensus 493 eil--~~dcDILIPcA~--~n~It~enA~~l~~---~~akiVvEgAN~P-~T~e 538 (588)
++. -.++||+|-|+. ...++.+......+ .+-.+|+.-|+-. +.|+
T Consensus 235 ~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 235 ELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred HHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 111 137899999865 35677776655422 2346888888643 4443
No 135
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.24 E-value=0.3 Score=54.69 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=69.8
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe-CCCCcc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPW 495 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i-~~~eil 495 (588)
.+|.|.|.|++|..+|+.|.+.|.+| .+-|. +.++...+.+.....+. ..+.. +.+++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V-~v~dr----------~~~~~~~l~~~~~~~g~---------~i~~~~s~~e~v 61 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKI-SVYNR----------TYEKTEEFVKKAKEGNT---------RVKGYHTLEELV 61 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeE-EEEeC----------CHHHHHHHHHhhhhcCC---------cceecCCHHHHH
Confidence 37999999999999999999999984 55555 33443333321111110 00011 112233
Q ss_pred c--cccceeecCCCcCccchhhHHhhhh--cCCeEEEecCCC-C-CCHHHHHHHHHCCceEe
Q 007820 496 N--ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIA 551 (588)
Q Consensus 496 ~--~dcDILIPcA~~n~It~enA~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGI~vi 551 (588)
. .++|+++-|.+......+....|.. ..-++|+.+.|. | .|.+-.+.+.++||.|+
T Consensus 62 ~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl 123 (470)
T PTZ00142 62 NSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL 123 (470)
T ss_pred hcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 2 2578777775544444333333322 234789999997 3 56667789999999997
No 136
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.23 E-value=0.07 Score=51.91 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=45.8
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHH--HHHHHHHHhhccCChhh--hhhccCCceEeCCCC
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM--KISFLRDIKSQQRSLRD--YSKTYARSKYYDEAK 493 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie--~L~~L~~~k~~~gsL~~--y~~~~p~a~~i~~~e 493 (588)
+|+|.|.|.+|...|..+...|.. |.+.|. |++.++.. .+...+......+.+.. ........++.++-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~-----~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDR-----SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLE 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-S-----SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEEC-----ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHH
Confidence 689999999999999999999999 466666 44433221 11111111112233221 000111233333333
Q ss_pred ccccccceeecCCCcCc
Q 007820 494 PWNERCDVAFPCASQNE 510 (588)
Q Consensus 494 il~~dcDILIPcA~~n~ 510 (588)
-+. +||++|.|..++.
T Consensus 75 ~~~-~adlViEai~E~l 90 (180)
T PF02737_consen 75 EAV-DADLVIEAIPEDL 90 (180)
T ss_dssp GGC-TESEEEE-S-SSH
T ss_pred HHh-hhheehhhccccH
Confidence 333 9999999998865
No 137
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.29 Score=51.60 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=43.3
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHH--CCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA--YGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e--~GAKVVaVSDs 448 (588)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+ .+|. |+++.+
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at-Vtvchs 192 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT-VTLCHT 192 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCE-EEEeCC
Confidence 468988887655 4668899999999999 67799999999998 7888 578776
No 138
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.22 Score=52.36 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..|++..+ ++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+.- + |.
T Consensus 138 ~PcTp~aii~lL----~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AT-Vt~chs~T----~---dl---------- 195 (282)
T PRK14180 138 ESCTPKGIMTML----REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRFT----T---DL---------- 195 (282)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEEcCCC----C---CH----------
Confidence 467988886654 4568899999999999 577999999999999998 56776521 1 11
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
.++ ...+||+|-|+.. +.|+.+.. +.+|-+|=-|-|-
T Consensus 196 ------~~~----------------~k~ADIvIsAvGkp~~i~~~~v----k~gavVIDvGin~ 233 (282)
T PRK14180 196 ------KSH----------------TTKADILIVAVGKPNFITADMV----KEGAVVIDVGINH 233 (282)
T ss_pred ------HHH----------------hhhcCEEEEccCCcCcCCHHHc----CCCcEEEEecccc
Confidence 111 1377999888764 66666543 4477777666664
No 139
>PRK11579 putative oxidoreductase; Provisional
Probab=94.20 E-value=0.34 Score=51.27 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=70.1
Q ss_pred cEEEEeccchHHH-HHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC-CCC
Q 007820 417 LRCVVSGSGKIAM-HVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EAK 493 (588)
Q Consensus 417 krVaIQGfGNVG~-~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~-~~e 493 (588)
.||+|+|+|.+|. +.+..+.. .++++++|+|. |+ ++. . . . +++....+ -++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~-----~~-----~~~---~---~------~----~~~~~~~~~~~e 58 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS-----DA-----TKV---K---A------D----WPTVTVVSEPQH 58 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC-----CH-----HHH---H---h------h----CCCCceeCCHHH
Confidence 5899999999997 45666655 47999999987 22 221 1 1 1 12222222 244
Q ss_pred cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHH---HHHCCceEecc
Q 007820 494 PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDV---LKKANVLIAPA 553 (588)
Q Consensus 494 il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~i---L~~rGI~viPD 553 (588)
++ +.++|+++=|+ .+..+.+.+...++.|..++||=-=..+..||+++ .+++|+.+...
T Consensus 59 ll~~~~vD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~ 121 (346)
T PRK11579 59 LFNDPNIDLIVIPT-PNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVF 121 (346)
T ss_pred HhcCCCCCEEEEcC-CcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 55 35789998775 55678888888888899999974222233445443 36778776543
No 140
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.16 Score=53.93 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=43.4
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccc-hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfG-NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..|++.. |++.+.+++||+|+|.|-| .||..+|..|.+.|+. |+++++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~ 191 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHS 191 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECC
Confidence 35788887655 4556889999999999996 9999999999999999 466655
No 141
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.20 E-value=0.16 Score=43.27 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=51.4
Q ss_pred EEEEeccchHHHHHHHHHHHCC---CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe--CCC
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYG---AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEA 492 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~G---AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i--~~~ 492 (588)
||.|.|+||+|..+++.|.+.| .+|.-+++. +.+++..+. .+ ++ .... +..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------~~~~~~~~~---~~----------~~-~~~~~~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------SPEKAAELA---KE----------YG-VQATADDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------SHHHHHHHH---HH----------CT-TEEESEEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------cHHHHHHHH---Hh----------hc-cccccCChH
Confidence 6889999999999999999999 887656565 333432221 11 21 2222 222
Q ss_pred CccccccceeecCCCcCccchhhHHhh-hhcCCeEEEecCC
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINL-VNSGCRILVEGSN 532 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l-~~~~akiVvEgAN 532 (588)
+... .+||+|-|-....+.. -+..+ ....-++|+--+|
T Consensus 57 ~~~~-~advvilav~p~~~~~-v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 57 EAAQ-EADVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHH-HTSEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEEST
T ss_pred Hhhc-cCCEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCC
Confidence 3333 8999999987665543 22222 1125556655444
No 142
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.18 E-value=0.26 Score=55.14 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=67.7
Q ss_pred EEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC-ChhhhhhccCCceEeCCCCccc-
Q 007820 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPWN- 496 (588)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g-sL~~y~~~~p~a~~i~~~eil~- 496 (588)
|.|.|.|++|..+|+.|.+.|.+| .+.|. +.++...+.+.. ..+ .+.. +. +..++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V-~v~dr----------t~~~~~~l~~~~-~~g~~~~~-------~~--s~~e~v~~ 60 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTV-SVYNR----------TPEKTDEFLAEH-AKGKKIVG-------AY--SIEEFVQS 60 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeE-EEEeC----------CHHHHHHHHhhc-cCCCCcee-------cC--CHHHHHhh
Confidence 789999999999999999999985 45554 233432222210 001 0110 00 1112221
Q ss_pred -cccceeecCCCcCccchhhHHhhhh--cCCeEEEecCCC-C-CCHHHHHHHHHCCceEec
Q 007820 497 -ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIAP 552 (588)
Q Consensus 497 -~dcDILIPcA~~n~It~enA~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGI~viP 552 (588)
.+||+++-|........+....|.. ..=++|+++.|. | .|.+..+.|.++||.|+-
T Consensus 61 l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd 121 (467)
T TIGR00873 61 LERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG 121 (467)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc
Confidence 2578887776654444444344432 234799999995 4 556666789999999884
No 143
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.18 E-value=0.76 Score=47.95 Aligned_cols=135 Identities=14% Similarity=0.143 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCC
Q 007820 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (588)
Q Consensus 396 G~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gs 475 (588)
++|.+.+++ ..+.++++++++|.|.|..|+.++..|.+.|++-|.|.+. +++. .+++..+.+....
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R-----~~~~--~~~a~~l~~~l~~--- 175 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI-----KDDF--YERAEQTAEKIKQ--- 175 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC-----CchH--HHHHHHHHHHHhh---
Confidence 667666654 3455789999999999999999999999999986677776 2210 1222222221111
Q ss_pred hhhhhhccCCce--E--eCCC-Cc--cccccceeecCCCcCccc---hh---hHHhhhhcCCeEEEecCCCCCCHHHHHH
Q 007820 476 LRDYSKTYARSK--Y--YDEA-KP--WNERCDVAFPCASQNEID---QS---DAINLVNSGCRILVEGSNMPCTPEAVDV 542 (588)
Q Consensus 476 L~~y~~~~p~a~--~--i~~~-ei--l~~dcDILIPcA~~n~It---~e---nA~~l~~~~akiVvEgAN~P~T~eA~~i 542 (588)
.++... . ++.. .+ .-..+||+|-|+.-+.-. .. +...| .+-.+|.+-.-.|..-.-.+.
T Consensus 176 ------~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l--~~~~~v~D~vY~P~~T~ll~~ 247 (289)
T PRK12548 176 ------EVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVF--RKDLVVADTVYNPKKTKLLED 247 (289)
T ss_pred ------cCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhc--CCCCEEEEecCCCCCCHHHHH
Confidence 011111 1 1111 11 113579999877543221 11 12223 245688899888854444455
Q ss_pred HHHCCceEec
Q 007820 543 LKKANVLIAP 552 (588)
Q Consensus 543 L~~rGI~viP 552 (588)
-+++|..++.
T Consensus 248 A~~~G~~~~~ 257 (289)
T PRK12548 248 AEAAGCKTVG 257 (289)
T ss_pred HHHCCCeeeC
Confidence 5666665543
No 144
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.12 Score=54.46 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=44.2
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccch-HHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGN-VG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+.. +++.+.+++||+|+|.|-++ ||.-+|.+|.+.||. |+++++
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs 191 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHR 191 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEEC
Confidence 46898887654 55668899999999999999 999999999999998 577776
No 145
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.06 E-value=0.24 Score=52.31 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=43.2
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+. +|++.+.+++||+|+|.| +.-||.-++.+|.+.||. |+++.|
T Consensus 139 ~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~AT-Vtichs 191 (288)
T PRK14171 139 IPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCS-VTICHS 191 (288)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 4688888654 455668899999999999 567899999999999998 578876
No 146
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.98 E-value=0.35 Score=54.73 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
...+.+|+|.|.|.+|..++..+..+|++ |.+.|.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~ 196 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDT 196 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35689999999999999999999999997 666776
No 147
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=93.97 E-value=0.085 Score=56.08 Aligned_cols=118 Identities=26% Similarity=0.309 Sum_probs=72.3
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCC---CeeeCCCCCCHH
Q 007820 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAK---GYLVDEDGFDYM 461 (588)
Q Consensus 386 GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~---G~IydpdGLDie 461 (588)
=|++|-+..|+| ++ |.+.|..-.|.+|+|++ .|.||+-+.++..-+|++||+++-+. -.+.++-|+|.
T Consensus 128 LgvLGmpG~TAY---~g----Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~- 199 (340)
T COG2130 128 LGVLGMPGLTAY---FG----LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDA- 199 (340)
T ss_pred HhhcCCchHHHH---HH----HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCce-
Confidence 355665555544 33 44567777899999999 59999998888778999999999771 01111122221
Q ss_pred HHHHHHHHhhccCChhh-hhhccCCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 462 KISFLRDIKSQQRSLRD-YSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 462 ~L~~L~~~k~~~gsL~~-y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
..++|.. ++.. ..+..| --.||++.+--+++.+. +-.+++.+|+|++.|+
T Consensus 200 ----~idyk~~--d~~~~L~~a~P------------~GIDvyfeNVGg~v~DA--v~~~ln~~aRi~~CG~ 250 (340)
T COG2130 200 ----GIDYKAE--DFAQALKEACP------------KGIDVYFENVGGEVLDA--VLPLLNLFARIPVCGA 250 (340)
T ss_pred ----eeecCcc--cHHHHHHHHCC------------CCeEEEEEcCCchHHHH--HHHhhccccceeeeee
Confidence 0111111 0100 000111 25699999998877654 3344577999999998
No 148
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.94 E-value=0.25 Score=50.49 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=33.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5788999999999999999999999998778888864
No 149
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.29 Score=51.48 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=43.1
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+.+|. |+++.+
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~At-Vtichs 189 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHAT-VTIAHS 189 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 46898887655 45668899999999999 567899999999999998 577766
No 150
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=93.92 E-value=0.17 Score=54.43 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=60.7
Q ss_pred EEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhh---hhccCCce-EeC--C
Q 007820 419 CVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDY---SKTYARSK-YYD--E 491 (588)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y---~~~~p~a~-~i~--~ 491 (588)
|+|.|||.+|+.+++.+.+ .+.++|+|+|. +|+ ....+..... ..+...+ ...+.+.. .+. .
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~-----~~~-----~~a~lA~~lg-yds~~~~~~~~~~~~~~~l~v~g~~ 69 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT-----SPD-----FEAYRAKELG-IPVYAASEEFIPRFEEAGIEVAGTL 69 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC-----ChH-----HHHHHHHHhC-CCEEeecCCcceEeccCceEecCCH
Confidence 6899999999999998764 56899999986 332 2212222111 0010000 00000000 111 1
Q ss_pred CCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 492 ~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
++++ .+||++++|+ ....+.++++...+.++|.|.-||=
T Consensus 70 eeLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 70 EDLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred HHHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECCC
Confidence 2333 4799999997 5667788888888888888887753
No 151
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.91 E-value=0.13 Score=54.44 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=88.6
Q ss_pred CCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-C
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~ 492 (588)
+..+|+|+|.|++|...+.++.+ .+..+++|+|. |++- +.+ .. ..+.| +.. +.++ +
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi-----d~es---~gl---a~-A~~~G-i~~---------~~~~ie 60 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI-----DPES---DGL---AR-ARRLG-VAT---------SAEGID 60 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC-----Chhh---HHH---HH-HHHcC-CCc---------ccCCHH
Confidence 45789999999999987766665 57899999987 4431 111 11 11111 110 0111 2
Q ss_pred Cccc----cccceeecCCCcCccchhhHHhhhhcCCeEEEecC--CCC-----CCHHHHHHHHHCCceEeccccccccCc
Q 007820 493 KPWN----ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS--NMP-----CTPEAVDVLKKANVLIAPAMAAGAGGV 561 (588)
Q Consensus 493 eil~----~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA--N~P-----~T~eA~~iL~~rGI~viPD~laNAGGV 561 (588)
.++. .++|+++-|+ .+..+.+.+.++.+.|+.+|.+-. ++| ++.+...-....++...|+-..+.-=+
T Consensus 61 ~LL~~~~~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~ 139 (302)
T PRK08300 61 GLLAMPEFDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVA 139 (302)
T ss_pred HHHhCcCCCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHH
Confidence 2332 4789999877 556889999999999999999853 566 333333222345777777665544332
Q ss_pred e------eeecccc---cccccCCCCHHHHHh
Q 007820 562 V------AGELELN---QECNMVHWSPEDFES 584 (588)
Q Consensus 562 i------vS~~E~~---qN~~~~~ws~eeV~~ 584 (588)
+ +.|-|.+ |..+--.|+..-+|+
T Consensus 140 Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE 171 (302)
T PRK08300 140 AVSRVAPVHYAEIVASIASKSAGPGTRANIDE 171 (302)
T ss_pred HhcccCcCceeeeeeeehhhccCCcccccHHH
Confidence 2 3566766 444445576555554
No 152
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.81 E-value=0.22 Score=51.91 Aligned_cols=108 Identities=12% Similarity=0.145 Sum_probs=62.9
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCcccc
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNE 497 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~ 497 (588)
+|.|.|.|++|..+|..|.+.|..| .+.|. +.+++..+.+ . ++...+...-...
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V-~v~d~----------~~~~~~~~~~---~------------g~~~~~s~~~~~~ 56 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQL-QVFDV----------NPQAVDALVD---K------------GATPAASPAQAAA 56 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeE-EEEcC----------CHHHHHHHHH---c------------CCcccCCHHHHHh
Confidence 7999999999999999999999885 45554 2233221211 1 1111111111234
Q ss_pred ccceeecCCCcCccchhhH---Hhhhh--cCCeEEEecCCC-C-CCHHHHHHHHHCCceEe
Q 007820 498 RCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIA 551 (588)
Q Consensus 498 dcDILIPcA~~n~It~enA---~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGI~vi 551 (588)
+||++|-|-.......+-. ..+.. ..-++|+.-+.. | .+.+..+.+.++|+.|+
T Consensus 57 ~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 57 GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 7899998876653211110 11111 133566666665 4 45666788999998876
No 153
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.72 E-value=0.38 Score=51.58 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=62.8
Q ss_pred cEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc--cCChhhhhhccC--CceEeCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ--QRSLRDYSKTYA--RSKYYDE 491 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~--~gsL~~y~~~~p--~a~~i~~ 491 (588)
.||+|.|||.+|+.+++.+.+ .+..+++|+|++ + +....+.....- .+.+......+. +......
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~-----~-----~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~ 71 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK-----P-----DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGT 71 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC-----h-----HHHHHHHHhcCCCccccCccccccccCCceEEcCC
Confidence 489999999999999998875 578999999862 2 111111211100 000000000010 1111111
Q ss_pred -CCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 492 -AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 492 -~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
++++ .++|+++-|+ ....+.+++...++.|+++|.-|..
T Consensus 72 ~~el~-~~vDVVIdaT-~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 72 IEDLL-EKADIVVDAT-PGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhHhh-ccCCEEEECC-CchhhHHHHHHHHHCCCEEEEcCCC
Confidence 2233 4799999997 5567888888888889999998753
No 154
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.68 E-value=0.7 Score=51.81 Aligned_cols=74 Identities=23% Similarity=0.174 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHh-C--CCCCCcEEEEeccchHHHHHHHHHHHC-----CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHH
Q 007820 398 GLVFFAQLILADM-N--KELKGLRCVVSGSGKIAMHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (588)
Q Consensus 398 GV~~~i~~~l~~~-g--~~l~GkrVaIQGfGNVG~~aAe~L~e~-----GAKVVaVSDs~G~IydpdGLDie~L~~L~~~ 469 (588)
.+-.|+++-|... + ...+.++|+|-|||-+|+.+++.|.+. +.++|+|.+..+.+ -|++.+..|+++
T Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-----~d~~~~ayLLky 180 (477)
T PRK08289 106 DVEAFVAEELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-----GDLEKRASLLRR 180 (477)
T ss_pred cHHHHHHHHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-----CCHHHHHHHhhh
Confidence 3445666555542 2 236688999999999999999998864 57899998764422 367777777776
Q ss_pred hhccCCh
Q 007820 470 KSQQRSL 476 (588)
Q Consensus 470 k~~~gsL 476 (588)
-...|.+
T Consensus 181 DSvhG~f 187 (477)
T PRK08289 181 DSVHGPF 187 (477)
T ss_pred hcCCCCC
Confidence 5555654
No 155
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.65 E-value=0.4 Score=49.97 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=65.2
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe-CCCCccc
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWN 496 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i-~~~eil~ 496 (588)
+|.|+|+|++|+..|+.|.+.|..|+ +.|. +.+++..+. + . ++... +.+++..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr----------~~~~~~~~~---~-~-----------g~~~~~s~~~~~~ 55 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDV----------NQEAVDVAG---K-L-----------GITARHSLEELVS 55 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEEC----------CHHHHHHHH---H-C-----------CCeecCCHHHHHH
Confidence 79999999999999999999999864 5665 223332121 1 1 11111 1122222
Q ss_pred -c-ccceeecCCCcCccchhhHHhhhh--cCCeEEEecCCC-C-CCHHHHHHHHHCCceEec
Q 007820 497 -E-RCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIAP 552 (588)
Q Consensus 497 -~-dcDILIPcA~~n~It~enA~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGI~viP 552 (588)
. .+|+++-|-.......+-...+.. ..=++|+.-++. | .+.+..+.+.++|+.|+-
T Consensus 56 ~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 56 KLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred hCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 1 278888877655333333333321 122577777665 5 456667888999998874
No 156
>PLN00203 glutamyl-tRNA reductase
Probab=93.63 E-value=0.52 Score=53.51 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=72.1
Q ss_pred HHHH-HHHHHHHHhCC-CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCC
Q 007820 398 GLVF-FAQLILADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (588)
Q Consensus 398 GV~~-~i~~~l~~~g~-~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gs 475 (588)
+|.+ +++.+.+.++. ++.+++|+|.|.|.+|..+++.|...|++-|.|.+. +.++...+.. ..+.
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR----------s~era~~La~---~~~g 312 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR----------SEERVAALRE---EFPD 312 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC----------CHHHHHHHHH---HhCC
Confidence 3443 34444455554 699999999999999999999999999865677765 2233222221 1000
Q ss_pred hhhhhhccCCceEeCCCCcc--ccccceeecCC--CcCccchhhHHhhhhc-----CCeEEEecCCCC-CCHH
Q 007820 476 LRDYSKTYARSKYYDEAKPW--NERCDVAFPCA--SQNEIDQSDAINLVNS-----GCRILVEGSNMP-CTPE 538 (588)
Q Consensus 476 L~~y~~~~p~a~~i~~~eil--~~dcDILIPcA--~~n~It~enA~~l~~~-----~akiVvEgAN~P-~T~e 538 (588)
. ...+.+-+++. -.++||+|-|+ ..-.|+.+..+.+... +-++++.-|.-. +.|+
T Consensus 313 ~--------~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~ 377 (519)
T PLN00203 313 V--------EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGAC 377 (519)
T ss_pred C--------ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccc
Confidence 0 01111112221 24899999875 4567888887776432 235888877654 4443
No 157
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.61 E-value=0.21 Score=50.10 Aligned_cols=142 Identities=19% Similarity=0.146 Sum_probs=87.4
Q ss_pred CCccHHHHHHHHHHHH-----HHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHH
Q 007820 392 TEATGYGLVFFAQLIL-----ADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l-----~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~ 465 (588)
..+|..||+..++..= ...+.+++||+|+|.| +..||.-+|.+|.+.||. |+++|++|..+-..+-..
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~At-Vti~~~~~~~~~~~~~~~----- 106 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQVFTRGESI----- 106 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEEecCccccccccccc-----
Confidence 4689999987766430 0114589999999999 567899999999999999 579998887764433211
Q ss_pred HHHHhhccCChhhhhhccCCceEeCCCCcc--ccccceeecCCCc-Cc-cchhhHHhhhhcCCeEEEecCCCCCCHHHHH
Q 007820 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQ-NE-IDQSDAINLVNSGCRILVEGSNMPCTPEAVD 541 (588)
Q Consensus 466 L~~~k~~~gsL~~y~~~~p~a~~i~~~eil--~~dcDILIPcA~~-n~-It~enA~~l~~~~akiVvEgAN~P~T~eA~~ 541 (588)
. +.... .+..+ ..+. ...+||+|-|... +. |+.+.. +.+|-+|==|-|.-.. +.
T Consensus 107 -~-hs~t~------------~~~~~-~~l~~~~~~ADIVIsAvG~~~~~i~~d~i----k~GavVIDVGi~~dvd---~~ 164 (197)
T cd01079 107 -R-HEKHH------------VTDEE-AMTLDCLSQSDVVITGVPSPNYKVPTELL----KDGAICINFASIKNFE---PS 164 (197)
T ss_pred -c-ccccc------------ccchh-hHHHHHhhhCCEEEEccCCCCCccCHHHc----CCCcEEEEcCCCcCcc---Hh
Confidence 0 00000 00000 0011 2488999998875 44 676653 4488777667675332 22
Q ss_pred HHHHCCceEeccccccccCceeeec
Q 007820 542 VLKKANVLIAPAMAAGAGGVVAGEL 566 (588)
Q Consensus 542 iL~~rGI~viPD~laNAGGVivS~~ 566 (588)
+..... .+.|- -|-++++.+
T Consensus 165 v~~~as-~iTPv----VGpvTva~L 184 (197)
T cd01079 165 VKEKAS-IYVPS----IGKVTIAML 184 (197)
T ss_pred HHhhcC-EeCCC----cCHHHHHHH
Confidence 333333 56773 777777654
No 158
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.60 E-value=0.24 Score=52.40 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 391 r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
-..+|..||+.. |++.+.+++||+|+|.| +|.||..+|..|.+.|+.| ++++
T Consensus 137 ~~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tV-tv~~ 189 (296)
T PRK14188 137 LVPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATV-TIAH 189 (296)
T ss_pred CcCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEE-EEEC
Confidence 346898888655 45568899999999999 9999999999999999995 5554
No 159
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.60 E-value=0.27 Score=50.19 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=32.4
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.|++++|+|.|.|-+|..+|+.|...|..-+.+.|.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 467889999999999999999999999877888775
No 160
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.58 E-value=0.71 Score=50.02 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+.+++|+|.|+|.+|..+++.|..+|++ |.+.|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEEC
Confidence 5778999999999999999999999998 566665
No 161
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.53 E-value=0.36 Score=51.21 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~----GAKVVaVSDs 448 (588)
..+|..|++.. |++.+.+++||+|+|.| +..||.-+|.+|.+. +|. |+++.+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNAT-VTVCHS 193 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCE-EEEeCC
Confidence 35788887654 55668899999999999 577899999999988 777 677766
No 162
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=93.52 E-value=0.28 Score=51.57 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEecc-chHHHHHHHHHHHCCCeEE
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPV 443 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVV 443 (588)
-|.|-.+--+...++++|.+++..+|+|.|+ |.+|..+|+.|..++.+..
T Consensus 145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ 195 (351)
T COG5322 145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKE 195 (351)
T ss_pred cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEE
Confidence 5888888888888888999999999999997 9999999999998877643
No 163
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.49 E-value=0.34 Score=51.04 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccc-hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfG-NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+. +|++.+.+++||+|+|.|-+ .||.-+|.+|.+.||.| +++.+
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtV-ti~hs 189 (281)
T PRK14183 137 VPCTPLGVME----LLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATV-DICHI 189 (281)
T ss_pred CCCcHHHHHH----HHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE-EEeCC
Confidence 4688888754 55666889999999999976 89999999999999984 67776
No 164
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.39 E-value=0.34 Score=52.32 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=66.8
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHh
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k 470 (588)
..+|..||+..+ ++.+.+++||+|+|+| +..||.-+|.+|.+.||+ |+++.++- + |
T Consensus 194 ~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT-VTicHs~T----~---n----------- 250 (345)
T PLN02897 194 VSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT-VSTVHAFT----K---D----------- 250 (345)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE-EEEEcCCC----C---C-----------
Confidence 468988886554 5668899999999999 567899999999999998 46776511 1 1
Q ss_pred hccCChhhhhhccCCceEeCCCCccccccceeecCCCc-CccchhhHHhhhhcCCeEEEecCCC
Q 007820 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 471 ~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
+.++ ...+||+|-|+.. +.++.+.. +.+|-+|=-|-|-
T Consensus 251 -----l~~~----------------~~~ADIvIsAvGkp~~v~~d~v----k~GavVIDVGin~ 289 (345)
T PLN02897 251 -----PEQI----------------TRKADIVIAAAGIPNLVRGSWL----KPGAVVIDVGTTP 289 (345)
T ss_pred -----HHHH----------------HhhCCEEEEccCCcCccCHHHc----CCCCEEEEccccc
Confidence 1111 1377999988764 66666553 4587666666664
No 165
>PRK08618 ornithine cyclodeaminase; Validated
Probab=93.37 E-value=0.68 Score=49.05 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCcEEEEeccchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccC-CceEeCC-
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-RSKYYDE- 491 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~-e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p-~a~~i~~- 491 (588)
..++++|.|.|..|+..+..+. ..+.+-|.|.|. + .++...+.+.... .++ ....+++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r-----~-----~~~a~~~~~~~~~---------~~~~~~~~~~~~ 186 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR-----T-----FEKAYAFAQEIQS---------KFNTEIYVVNSA 186 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC-----C-----HHHHHHHHHHHHH---------hcCCcEEEeCCH
Confidence 5679999999999998887765 468888888877 2 2333222221111 111 1112222
Q ss_pred CCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCC
Q 007820 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN 547 (588)
Q Consensus 492 ~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rG 547 (588)
++.. .++||++-|+.... ..-. ..++.++.+++=|++.|.-.|....+.++.
T Consensus 187 ~~~~-~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a 238 (325)
T PRK08618 187 DEAI-EEADIIVTVTNAKT--PVFS-EKLKKGVHINAVGSFMPDMQELPSEAIARA 238 (325)
T ss_pred HHHH-hcCCEEEEccCCCC--cchH-HhcCCCcEEEecCCCCcccccCCHHHHhhC
Confidence 1222 48999998776542 2222 334779999999999996666544444443
No 166
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.37 E-value=0.11 Score=49.71 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
.+|+|++|+|.|-|+||...++.|.+.|+.|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4799999999999999999999999999997655
No 167
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.35 E-value=1 Score=51.22 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHHHHHH------hCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHH
Q 007820 394 ATGYGLVFFAQLILAD------MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLR 467 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~------~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~ 467 (588)
--++|++.+++..+.. .+.++++++|+|.|.|.+|+.++..|.+.|++| .|.+. +.++...+.
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V-~i~nR----------~~e~a~~la 419 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARV-VIANR----------TYERAKELA 419 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEE-EEEcC----------CHHHHHHHH
Confidence 3468888888754422 245789999999999999999999999999974 56665 233433232
Q ss_pred HHhhccCChhhhhhccCCceEeCC-CCccccccceeecCCCcCccc---hh--hHHhhhhcCCeEEEecCCCCCCHHHHH
Q 007820 468 DIKSQQRSLRDYSKTYARSKYYDE-AKPWNERCDVAFPCASQNEID---QS--DAINLVNSGCRILVEGSNMPCTPEAVD 541 (588)
Q Consensus 468 ~~k~~~gsL~~y~~~~p~a~~i~~-~eil~~dcDILIPcA~~n~It---~e--nA~~l~~~~akiVvEgAN~P~T~eA~~ 541 (588)
+.. .... ..++. .+.+..++||+|-|+.-+.-. .. +...| ....+|.+-.-+|..-.-.+
T Consensus 420 ~~l--~~~~----------~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l--~~~~~v~D~vY~P~~T~ll~ 485 (529)
T PLN02520 420 DAV--GGQA----------LTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHAL--KHYSLVFDAVYTPKITRLLR 485 (529)
T ss_pred HHh--CCce----------eeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhC--CCCCEEEEeccCCCcCHHHH
Confidence 211 0000 00110 112234679998766543321 11 11222 24568888888885433444
Q ss_pred HHHHCCceEe
Q 007820 542 VLKKANVLIA 551 (588)
Q Consensus 542 iL~~rGI~vi 551 (588)
.-+++|..++
T Consensus 486 ~A~~~G~~~~ 495 (529)
T PLN02520 486 EAEESGAIIV 495 (529)
T ss_pred HHHHCCCeEe
Confidence 4455554443
No 168
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.32 E-value=0.2 Score=45.99 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.5
Q ss_pred CcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+||+|.|.|.||..+|+.|...|..-+.+.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 579999999999999999999999977888875
No 169
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.30 E-value=0.56 Score=52.95 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=68.4
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccc-
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN- 496 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~- 496 (588)
+|.++|.|++|..+|+-|.+.|.+ |+|.|. +.++...+.+.....|. ..+ ..+ -+.+++..
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NR----------t~~k~~~l~~~~~~~Ga-~~~----~~a--~s~~e~v~~ 69 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFP-ISVYNR----------TTSKVDETVERAKKEGN-LPL----YGF--KDPEDFVLS 69 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCe-EEEECC----------CHHHHHHHHHhhhhcCC-ccc----ccC--CCHHHHHhc
Confidence 699999999999999999999998 456665 23343323321110010 000 000 01112221
Q ss_pred -cccceeecCCCcCccchhhHHhhhh--cCCeEEEecCCC-C-CCHHHHHHHHHCCceEe
Q 007820 497 -ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIA 551 (588)
Q Consensus 497 -~dcDILIPcA~~n~It~enA~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGI~vi 551 (588)
..||++|-|-.......+-...|+. ..=++|+++.|. | .|.+..+.++++|+.|+
T Consensus 70 l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 70 IQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1488888775544333222222222 245799999997 4 66777788999999987
No 170
>PRK08223 hypothetical protein; Validated
Probab=93.29 E-value=0.5 Score=49.88 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.|+..+|+|.|.|-+|..+|+.|...|..-+.+.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 468889999999999999999999999877888875
No 171
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.27 E-value=0.21 Score=52.57 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=43.8
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccc-hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfG-NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+.. |++.+.+++||+|+|.|-| .||.-+|.+|.+.||. |+++++
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt-Vtv~hs 189 (285)
T PRK14191 137 VPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGAS-VSVCHI 189 (285)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCE-EEEEeC
Confidence 46898887654 5566889999999999988 8999999999999999 567665
No 172
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=93.27 E-value=0.17 Score=54.80 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=62.3
Q ss_pred cEEEEeccchHHHHHHHHHHHC-----CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhh----------
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK---------- 481 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-----GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~---------- 481 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|..+ |++.+..|+++-...|++..-..
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~--------~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~ 75 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMST--------NAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKT 75 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCC--------ChhheeeeeeeecCCCCcCCceeeccccccccc
Confidence 5899999999999999998764 479999998411 23333334433333343221000
Q ss_pred -c---cCC--ceEe----CCCC-cc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 482 -T---YAR--SKYY----DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 482 -~---~p~--a~~i----~~~e-il-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
. ..+ ...+ ++.+ +| +..+|++++|+.. -.+.+.|...++.|||=|+=.|
T Consensus 76 ~~~l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~-f~t~~~a~~Hl~~GAKkViiSA 136 (361)
T PTZ00434 76 DDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGL-FTDKLAAEGHLKGGAKKVVISA 136 (361)
T ss_pred CCEEEECCEEEEEEEecCChhhCchhhcCCCEEEeCcee-eccHHHHhhhhhcCCCEEEECC
Confidence 0 001 1112 1222 47 5789999998743 4566777666677776554433
No 173
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.22 E-value=0.52 Score=49.00 Aligned_cols=122 Identities=18% Similarity=0.295 Sum_probs=76.8
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc-cCChhhhhhccCCceEeCCCCcc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ-QRSLRDYSKTYARSKYYDEAKPW 495 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~-~gsL~~y~~~~p~a~~i~~~eil 495 (588)
+++-++|.|.+|..+++.|...|..||+- |. |.+..+.+...-.. -.++.++....+ ++..+|
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~y-D~----------n~~av~~~~~~ga~~a~sl~el~~~L~-----~pr~vW 64 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGY-DV----------NQTAVEELKDEGATGAASLDELVAKLS-----APRIVW 64 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEE-cC----------CHHHHHHHHhcCCccccCHHHHHHhcC-----CCcEEE
Confidence 35678999999999999999999997743 32 33333222211100 123444432221 222234
Q ss_pred ccccceeecCC-CcCccchhhHHhhhhcCCeEEEecCCCCC--CHHHHHHHHHCCceEeccccccccCcee
Q 007820 496 NERCDVAFPCA-SQNEIDQSDAINLVNSGCRILVEGSNMPC--TPEAVDVLKKANVLIAPAMAAGAGGVVA 563 (588)
Q Consensus 496 ~~dcDILIPcA-~~n~It~enA~~l~~~~akiVvEgAN~P~--T~eA~~iL~~rGI~viPD~laNAGGViv 563 (588)
+.+|++ +.+.+-.+-+..| ..--+|++|.|.-. +..-.+.|.++||.++- +--+|||.-
T Consensus 65 -----lMvPag~it~~vi~~la~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G 126 (300)
T COG1023 65 -----LMVPAGDITDAVIDDLAPLL--SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWG 126 (300)
T ss_pred -----EEccCCCchHHHHHHHHhhc--CCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchh
Confidence 578887 5555545556666 46679999999764 44455789999999984 567888763
No 174
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.21 E-value=0.4 Score=48.16 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|-+|..+|+.|...|..-+.+.|.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4788999999999999999999999998778888763
No 175
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.14 E-value=0.14 Score=54.27 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.++.|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999999999999999999999987664
No 176
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.13 E-value=0.12 Score=51.36 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.1
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++|++|+|.|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 36899999999999999999999999999975443
No 177
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.13 E-value=0.53 Score=49.57 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=70.5
Q ss_pred CCCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
...+++.|.|.|..|+..++.+.. .+.+-|.|.+. +.++...+.+.-... ......-+.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------~~~~a~~~a~~~~~~---------~~~~~~~~~~ 183 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------TAASAAAFCAHARAL---------GPTAEPLDGE 183 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHHHHHhc---------CCeeEECCHH
Confidence 467899999999999999999875 67676777776 233332222211110 0111111111
Q ss_pred CccccccceeecCCCc--CccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEec
Q 007820 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 552 (588)
Q Consensus 493 eil~~dcDILIPcA~~--n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viP 552 (588)
+.. .++||++-|+.. -.++. . ++.++-+++=|++.|-..|.+..+..+--+|+-
T Consensus 184 ~av-~~aDiVitaT~s~~Pl~~~----~-~~~g~hi~~iGs~~p~~~El~~~~~~~a~v~vD 239 (304)
T PRK07340 184 AIP-EAVDLVVTATTSRTPVYPE----A-ARAGRLVVAVGAFTPDMAELAPRTVRGSRLYVD 239 (304)
T ss_pred HHh-hcCCEEEEccCCCCceeCc----c-CCCCCEEEecCCCCCCcccCCHHHHhhCeEEEc
Confidence 222 499999988765 33433 1 356999999999999887766545444434443
No 178
>PRK07680 late competence protein ComER; Validated
Probab=92.98 E-value=0.36 Score=49.44 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=64.1
Q ss_pred EEEEeccchHHHHHHHHHHHCCC---eEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GA---KVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
+|.|.|.|++|..+++.|.+.|. ..|.+.|. + .+.+..+. + .+++.....+..-
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r-----~-----~~~~~~~~---~----------~~~g~~~~~~~~~ 58 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR-----T-----PAKAYHIK---E----------RYPGIHVAKTIEE 58 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC-----C-----HHHHHHHH---H----------HcCCeEEECCHHH
Confidence 69999999999999999999884 23566665 2 22221111 1 1123332222111
Q ss_pred cccccceeecCCCcCccchhhHHhhhh--cCCeEEEecCCCCCCHHHHHHHHHCCceEecccc
Q 007820 495 WNERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA~~l~~--~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~l 555 (588)
+..+||++|-|.....+ .+-.+.|.. ..-++|+--+|+-...+..+.+..+.+.++|...
T Consensus 59 ~~~~aDiVilav~p~~~-~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~~ 120 (273)
T PRK07680 59 VISQSDLIFICVKPLDI-YPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSIT 120 (273)
T ss_pred HHHhCCEEEEecCHHHH-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCChH
Confidence 23489999998865443 222333321 1235777777654333344555555678888643
No 179
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.94 E-value=0.53 Score=48.52 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CCcc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPW 495 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~eil 495 (588)
++|.|.|+|++|..+|+.|.+.|.+|+ +.|. + .+.+..+. .. +....+. +++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~-------~---~~~~~~~~---~~------------g~~~~~~~~e~- 55 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDR-------N---PEAVAEVI---AA------------GAETASTAKAV- 55 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcC-------C---HHHHHHHH---HC------------CCeecCCHHHH-
Confidence 589999999999999999999998864 4454 2 22221111 11 1111111 112
Q ss_pred ccccceeecCCCcCccchhh-------HHhhhhcCCeEEEecCCC-CC-CHHHHHHHHHCCceEec
Q 007820 496 NERCDVAFPCASQNEIDQSD-------AINLVNSGCRILVEGSNM-PC-TPEAVDVLKKANVLIAP 552 (588)
Q Consensus 496 ~~dcDILIPcA~~n~It~en-------A~~l~~~~akiVvEgAN~-P~-T~eA~~iL~~rGI~viP 552 (588)
-.+||++|-|.......... ...+ . .=++|+.-.+. |. +.+..+.+.++|+.++.
T Consensus 56 ~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~-~-~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 56 AEQCDVIITMLPNSPHVKEVALGENGIIEGA-K-PGTVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred HhcCCEEEEeCCCHHHHHHHHcCcchHhhcC-C-CCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 24799999987643321111 1111 1 23566665554 32 33455677888887644
No 180
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.88 E-value=0.14 Score=56.08 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+.+|.||||.|.|+|++|+.+|+.+...|.+|++..
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 347899999999999999999999999999987653
No 181
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.84 E-value=0.16 Score=54.26 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=63.3
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~ 491 (588)
.+|.|++|.|.|+|++|+.+|+.|...|.+|++. |.+ ++ .. .. + .++.++
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~-----~~-----~~---~~----------~------~~~~~~ 191 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAY-----PN-----KD---LD----------F------LTYKDS 191 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCC-----hh-----Hh---hh----------h------hhccCC
Confidence 4689999999999999999999999999997655 331 11 10 00 0 000000
Q ss_pred CCccccccceeecCCCcC-----ccchhhHHhhhhcCCeEEEecCCCC-CCHHH-HHHHHHCCce
Q 007820 492 AKPWNERCDVAFPCASQN-----EIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL 549 (588)
Q Consensus 492 ~eil~~dcDILIPcA~~n-----~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGI~ 549 (588)
-+-+-..||+++-|...+ .++.+....+ +.++ +++..|=++ +..+| .+.|.+..|.
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~m-k~ga-vlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHV-KKGA-ILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcC-CCCc-EEEEcCCccccCHHHHHHHHHcCCee
Confidence 001123778887776543 4444444443 3344 777777777 44444 3666666553
No 182
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.84 E-value=0.61 Score=48.70 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|++.+|+|.|.|-||.++|+.|.+.|..=++|.|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4688899999999999999999999996557888763
No 183
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.79 E-value=0.56 Score=49.55 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=42.4
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~----GAKVVaVSDs 448 (588)
..+|..||+.. |++.+.+++||+|+|.| +..||.-+|.+|.+. +|. |+++.+
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~At-Vtvchs 189 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNAT-VTLLHS 189 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCE-EEEeCC
Confidence 35798888655 45668899999999999 567899999999998 677 567765
No 184
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.75 E-value=1.9 Score=44.91 Aligned_cols=124 Identities=9% Similarity=0.080 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~g 474 (588)
-++|.+.+++. .+.+ .+++|+|.|.|-.|+.++-.|.+.|++-|.|.++ + .++...|.+.. +
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR-----~-----~~~a~~la~~~---~ 167 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR-----N-----EKTGKALAELY---G 167 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC-----C-----HHHHHHHHHHh---C
Confidence 36677666653 3444 3579999999999999999999999977888877 2 23332232211 0
Q ss_pred ChhhhhhccCCceEeCCCCccccccceeecCCCcCccchh-------hHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCC
Q 007820 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQS-------DAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN 547 (588)
Q Consensus 475 sL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~n~It~e-------nA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rG 547 (588)
..+ . +.+-...+||+|-|+.-+..... +...| .+..+|.+-.-.|....-.+.-+++|
T Consensus 168 -----------~~~-~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l--~~~~~v~D~vY~P~~T~ll~~A~~~G 232 (272)
T PRK12550 168 -----------YEW-R-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEI--DAASVVFDVVALPAETPLIRYARARG 232 (272)
T ss_pred -----------Ccc-h-hhcccccCCEEEECCccccCCCCccccCCCCHHHc--CCCCEEEEeecCCccCHHHHHHHHCc
Confidence 000 0 01112458999998764332111 11222 24568888888885444455556666
Q ss_pred ceEe
Q 007820 548 VLIA 551 (588)
Q Consensus 548 I~vi 551 (588)
..++
T Consensus 233 ~~~i 236 (272)
T PRK12550 233 KTVI 236 (272)
T ss_pred CeEe
Confidence 6554
No 185
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.71 E-value=0.37 Score=52.10 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=33.4
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|++++|+|.|.|-+|..+++.|...|..-+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5789999999999999999999999998778888864
No 186
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.66 E-value=0.35 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHH--HHCCCeEEEEEcC
Q 007820 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (588)
Q Consensus 395 TG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L--~e~GAKVVaVSDs 448 (588)
-||-|-+-.+++.+.+|.+ +-..|+|+|.||.|++++.+- .+.|.+|+++-|.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv 118 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV 118 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecC
Confidence 4677777777777777754 335799999999999998643 4689999999998
No 187
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.63 E-value=0.16 Score=50.74 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=30.5
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++|+|.|.|.||..-++.|.+.|++|+-|+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 6899999999999999999999999999965443
No 188
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.59 E-value=0.44 Score=47.14 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|.|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4678899999999999999999999999878888753
No 189
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.55 E-value=0.62 Score=49.36 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=42.1
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~----GAKVVaVSDs 448 (588)
..+|..||+.. |++.+.+++||+|+|.| +.-||.-+|.+|.+. +|. |+++.+
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (293)
T PRK14185 137 VSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCT-VTVCHS 193 (293)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCE-EEEecC
Confidence 46898887654 55668899999999999 567899999999988 577 577765
No 190
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.48 E-value=0.65 Score=42.83 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.5
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+|+|.|.|.+|..+|+.|...|..=+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999866777765
No 191
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.41 E-value=0.39 Score=51.91 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=66.1
Q ss_pred hCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe
Q 007820 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (588)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i 489 (588)
+|.++-|||++|.|+|.+|+-+|..+.-.|.+||+- || +.+.++ .+ .| +.+.+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~--------dp--i~~~~~---~~---------a~-----gvq~v 192 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGY--------DP--ITPMAL---AE---------AF-----GVQLV 192 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEee--------cC--CCchHH---HH---------hc-----cceee
Confidence 467899999999999999999999999999998743 33 233222 11 11 34445
Q ss_pred CCCCcccccccee---ecC--CCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHH
Q 007820 490 DEAKPWNERCDVA---FPC--ASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV 540 (588)
Q Consensus 490 ~~~eil~~dcDIL---IPc--A~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~ 540 (588)
+-+++|. .||.+ +|. ++++.++.+.-.++ +-|++||=-+--+-+...|-
T Consensus 193 sl~Eil~-~ADFitlH~PLtP~T~~lin~~tfA~m-KkGVriIN~aRGGvVDe~AL 246 (406)
T KOG0068|consen 193 SLEEILP-KADFITLHVPLTPSTEKLLNDETFAKM-KKGVRIINVARGGVVDEPAL 246 (406)
T ss_pred eHHHHHh-hcCEEEEccCCCcchhhccCHHHHHHh-hCCcEEEEecCCceechHHH
Confidence 5455553 33433 333 55799999887776 55888765443344554443
No 192
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.30 E-value=0.42 Score=50.40 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=43.5
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..||+.. |++.+.+++||+|+|.|- |.||.-+|..|.+.|+.| +++.+
T Consensus 138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatV-tv~~s 190 (284)
T PRK14179 138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATV-TLTHS 190 (284)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEE-EEECC
Confidence 46898887654 456788999999999998 999999999999999985 55544
No 193
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.29 E-value=2 Score=45.01 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
..|.+|+|.|.|.||..++.++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 478999999999999999999999999977654
No 194
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.24 E-value=0.66 Score=49.24 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=42.4
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~----GAKVVaVSDs 448 (588)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+. +|. |+++.+
T Consensus 141 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~at-Vtv~hs 197 (297)
T PRK14168 141 LPCTPAGIQEML----VRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANAT-VTIVHT 197 (297)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCE-EEEecC
Confidence 458988876554 4568999999999999 677999999999988 677 577765
No 195
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.23 E-value=1.4 Score=49.99 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+.+.+|+|.|+|.+|..++..+..+|++ |.+.|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35578999999999999999999999999 556665
No 196
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.22 E-value=0.62 Score=38.83 Aligned_cols=47 Identities=30% Similarity=0.424 Sum_probs=37.3
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHH
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLR 467 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~ 467 (588)
||+|+|.|.+|.-+|..|.+.|.+| .+.+....+. ..+|.+....+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~v-tli~~~~~~~--~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEV-TLIERSDRLL--PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEE-EEEESSSSSS--TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEE-EEEeccchhh--hhcCHHHHHHHH
Confidence 6899999999999999999999994 7777777666 567766543333
No 197
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.20 E-value=0.68 Score=50.54 Aligned_cols=128 Identities=11% Similarity=0.191 Sum_probs=70.4
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhc--cCChhhhhhccCCceEe-CC-C
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ--QRSLRDYSKTYARSKYY-DE-A 492 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~--~gsL~~y~~~~p~a~~i-~~-~ 492 (588)
++|+|.|.|.||..+|..|. .|..|+ +.|. |.+++..+.+-... ...+.++.... ..... +. .
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~----------d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~ 67 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDI----------LPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDK 67 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEEC----------CHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecch
Confidence 37999999999999997776 588854 5554 33333222210000 00111111000 11111 11 1
Q ss_pred CccccccceeecCCCcCc------cchhh-------HHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceEeccccccc
Q 007820 493 KPWNERCDVAFPCASQNE------IDQSD-------AINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAAGA 558 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~------It~en-------A~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~viPD~laNA 558 (588)
.-...+||++|-|-.+.. .+-.. ...+ +.+.-+|.+..=-| +|.+..+.+.+.|+.+.|.++...
T Consensus 68 ~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G 146 (388)
T PRK15057 68 NEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG 146 (388)
T ss_pred hhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence 112358999999877651 11111 1222 34666667776666 556666778888999999987643
No 198
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.16 E-value=0.71 Score=49.40 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=69.6
Q ss_pred hCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe
Q 007820 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (588)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i 489 (588)
++.++.|||+.|.|+|.+|+.+|+.+.-.|.+|+ . ||+..- .+.. + . -+++++
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y-------~~~~~~-~~~~------~-------~-----~~~~y~ 192 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-Y-------YDRSPN-PEAE------K-------E-----LGARYV 192 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-E-------ECCCCC-hHHH------h-------h-----cCceec
Confidence 4678999999999999999999999998899964 3 344433 1110 0 0 024445
Q ss_pred CCCCccccccceeecCCC-----cCccchhhHHhhhhcCCeEEEecCCCC-CCHHH-HHHHHHCCce
Q 007820 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL 549 (588)
Q Consensus 490 ~~~eil~~dcDILIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGI~ 549 (588)
+-+++ -..+||++-... .+.||.+.-.++ +.+ -+++--|=++ +..+| .+.|++.-|.
T Consensus 193 ~l~el-l~~sDii~l~~Plt~~T~hLin~~~l~~m-k~g-a~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 193 DLDEL-LAESDIISLHCPLTPETRHLINAEELAKM-KPG-AILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred cHHHH-HHhCCEEEEeCCCChHHhhhcCHHHHHhC-CCC-eEEEECCCccccCHHHHHHHHHhCCcc
Confidence 42222 347788865433 366777776666 223 4666666676 44444 5777777654
No 199
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.07 E-value=0.73 Score=47.44 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=62.7
Q ss_pred cEEEEeccchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~--GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
++|.|+|+|+.|..+++++.+- .++.++|.|+ + .++. +++....+ .-...+-++.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~-----~-----~ek~---~~~~~~~~----------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR-----D-----EEKA---KELEASVG----------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC-----C-----HHHH---HHHHhhcC----------CCccccHHHH
Confidence 3789999999999999987743 5899999988 2 2332 11111111 1111111333
Q ss_pred cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHH
Q 007820 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL 543 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL 543 (588)
. .+.|++++||.++.+-+ -+.++.++++.+|+=.--.-..++-.+.|
T Consensus 58 ~-~~~DlvVEaAS~~Av~e-~~~~~L~~g~d~iV~SVGALad~~l~erl 104 (255)
T COG1712 58 I-AEVDLVVEAASPEAVRE-YVPKILKAGIDVIVMSVGALADEGLRERL 104 (255)
T ss_pred h-hccceeeeeCCHHHHHH-HhHHHHhcCCCEEEEechhccChHHHHHH
Confidence 3 68899999999887744 44555577777776443333455554444
No 200
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.07 E-value=0.64 Score=51.17 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=62.2
Q ss_pred CCCcEEEEecc----------chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhcc
Q 007820 414 LKGLRCVVSGS----------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTY 483 (588)
Q Consensus 414 l~GkrVaIQGf----------GNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~ 483 (588)
++||+|+|-|. -.....+++.|.+.|++|+ +|||....-.. ..+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~--------aYDP~a~~~~~------------------~~~ 361 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI--------AYDPVAMENAF------------------RNF 361 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE--------EECchhhHHHH------------------hcC
Confidence 99999999996 4667889999999999985 57887542211 012
Q ss_pred CCceEeCCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC
Q 007820 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (588)
Q Consensus 484 p~a~~i~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (588)
|+.++.+..+-.-..||+++-+.--+++-.-+-..+ -.+.++|..|-|.
T Consensus 362 ~~~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~-~m~~~~v~DgRni 410 (414)
T COG1004 362 PDVELESDAEEALKGADAIVINTEWDEFRDLDFEKL-LMKTPVVIDGRNI 410 (414)
T ss_pred CCceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh-hccCCEEEecccc
Confidence 334444433333457899998876555544433332 2388899998885
No 201
>PLN02306 hydroxypyruvate reductase
Probab=92.03 E-value=0.2 Score=54.72 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHH-HCCCeEEEE
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSV 445 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~-e~GAKVVaV 445 (588)
|.++.|+||.|.|+|++|+.+|+.|. ..|.+|++.
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 45799999999999999999999985 789997654
No 202
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.03 E-value=0.13 Score=55.05 Aligned_cols=118 Identities=22% Similarity=0.264 Sum_probs=67.3
Q ss_pred EEEeccchHHHHHHHHHHHCCCe-EEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC---Cc
Q 007820 419 CVVSGSGKIAMHVLEKLIAYGAI-PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA---KP 494 (588)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GAK-VVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~---ei 494 (588)
|.|.|+|.||+.+++.|.+.+-. =|.|.|. +.+++..+.+.. ....+. ...++-. ++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------~~~~~~~~~~~~-~~~~~~--------~~~~d~~~~~~l 61 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------NPEKAERLAEKL-LGDRVE--------AVQVDVNDPESL 61 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------SHHHHHHHHT---TTTTEE--------EEE--TTTHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------CHHHHHHHHhhc-ccccee--------EEEEecCCHHHH
Confidence 68999999999999999988753 4778887 444543222110 111111 1111111 11
Q ss_pred --cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHH---HHHHHHHCCceEecccccccc
Q 007820 495 --WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPE---AVDVLKKANVLIAPAMAAGAG 559 (588)
Q Consensus 495 --l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~e---A~~iL~~rGI~viPD~laNAG 559 (588)
+-.+|||+|-|+... .+..-++..++.++.+|= -+. .+.+ -++..+++|+.++++.=.+.|
T Consensus 62 ~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 234899999999765 666677777778999887 111 1222 236667899999987755554
No 203
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.00 E-value=0.35 Score=50.09 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e 493 (588)
.+|.+|+|.|.|.||..++.++...|+++|.++|. ++ +++ ...+. ... ++..+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~-----~~-----~rl---~~a~~-~~~-------------i~~~~ 195 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET-----NP-----RRR---DGATG-YEV-------------LDPEK 195 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CH-----HHH---Hhhhh-ccc-------------cChhh
Confidence 46889999999999999999999999997777765 22 222 11111 000 11111
Q ss_pred ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
.....+|++|.|+.... +.+.+-.++..+.++|.=|.
T Consensus 196 ~~~~g~Dvvid~~G~~~-~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 196 DPRRDYRAIYDASGDPS-LIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ccCCCCCEEEECCCCHH-HHHHHHHhhhcCcEEEEEee
Confidence 01236899999876432 33455556667788876554
No 204
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.98 E-value=0.69 Score=49.66 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=33.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|.+|..+|+.|.+.|..-|.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5788999999999999999999999998667888763
No 205
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.92 E-value=0.65 Score=46.51 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=33.2
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5788999999999999999999999998777888864
No 206
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.85 E-value=0.25 Score=47.26 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=27.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+...+|+|.|.|+||..+++.|..+|++++.+-
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 4566899999999999999999999999965443
No 207
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.81 E-value=0.81 Score=49.73 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=33.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+..+|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678899999999999999999999998778888864
No 208
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.72 E-value=0.43 Score=50.28 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=42.9
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..|++. +|++.+.+++||+|+|.| +.-||.-+|.+|.+.||. |+++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~at-Vt~chs 190 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENAT-VTYCHS 190 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEeC
Confidence 3578887754 556678999999999999 678999999999999998 466665
No 209
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=91.67 E-value=1.1 Score=48.57 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=53.9
Q ss_pred cEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhh-hhh---c---cCC---
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD-YSK---T---YAR--- 485 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~-y~~---~---~p~--- 485 (588)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. ..|.+.+..|+++-...|++.. -.. . ..+
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~--------~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~ 74 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA--------SVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQK 74 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeE
Confidence 5899999999999999987754 5899999873 2366677677776655565521 000 0 011
Q ss_pred ceEe---CCCC-cc-ccccceeecCCCc
Q 007820 486 SKYY---DEAK-PW-NERCDVAFPCASQ 508 (588)
Q Consensus 486 a~~i---~~~e-il-~~dcDILIPcA~~ 508 (588)
.... ++++ .| +..+|++|.|+..
T Consensus 75 i~~~~~~dp~~~~w~~~gvDiVie~TG~ 102 (342)
T PTZ00353 75 IRVSAKHDLVEIAWRDYGVQYVVECTGL 102 (342)
T ss_pred EEEEecCCcccCcccccCCCEEEEcccc
Confidence 1111 1111 46 4689999999854
No 210
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.29 E-value=0.77 Score=46.37 Aligned_cols=113 Identities=19% Similarity=0.344 Sum_probs=64.7
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe--C--CC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--D--EA 492 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i--~--~~ 492 (588)
++++|.|.|.||+.+|+.|.+.|.-|+.|- . |.+.+ .+.... . + ....+ + ..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id-~----------d~~~~---~~~~~~-----~----~-~~~~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLID-R----------DEERV---EEFLAD-----E----L-DTHVVIGDATDE 56 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEE-c----------CHHHH---HHHhhh-----h----c-ceEEEEecCCCH
Confidence 589999999999999999999999976553 3 22222 110000 0 0 11111 1 11
Q ss_pred Ccc----ccccceeecCCCcCccchhhHHhhhh-cCCeEEEecCCCCCCHHHHHHHHHCC--ceEeccccc
Q 007820 493 KPW----NERCDVAFPCASQNEIDQSDAINLVN-SGCRILVEGSNMPCTPEAVDVLKKAN--VLIAPAMAA 556 (588)
Q Consensus 493 eil----~~dcDILIPcA~~n~It~enA~~l~~-~~akiVvEgAN~P~T~eA~~iL~~rG--I~viPD~la 556 (588)
+.| -.++|+++=+...+++|.--+....+ .+.+-|+-=++ +++..++|.+-| ..+.|...+
T Consensus 57 ~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 57 DVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred HHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 222 24899999888877776543332222 24444443333 345567777777 455665543
No 211
>PRK10206 putative oxidoreductase; Provisional
Probab=91.25 E-value=0.46 Score=50.66 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=63.4
Q ss_pred cEEEEeccchHHH-HHHHHH-HH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeC-CC
Q 007820 417 LRCVVSGSGKIAM-HVLEKL-IA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (588)
Q Consensus 417 krVaIQGfGNVG~-~aAe~L-~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~-~~ 492 (588)
.||+|+|+|+.+. .-+..+ .. .++.+++|+|. +++ ..+ .. + .|+...+.+ -+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~-----~~~---~~~---~~---~----------~~~~~~~~~~~~ 57 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR-----HAK---PEE---QA---P----------IYSHIHFTSDLD 57 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC-----Chh---HHH---HH---H----------hcCCCcccCCHH
Confidence 4899999999775 223433 33 47899999997 321 111 01 1 122222222 24
Q ss_pred Ccc-ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHH---HHHCCceEe
Q 007820 493 KPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDV---LKKANVLIA 551 (588)
Q Consensus 493 eil-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~i---L~~rGI~vi 551 (588)
+++ +.++|+++=|+ .+..+.+.+...++.|..++||=-=..+..|++++ .+++|+.+.
T Consensus 58 ell~~~~iD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 58 EVLNDPDVKLVVVCT-HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred HHhcCCCCCEEEEeC-CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 455 35788887755 56677788877777888888874222233444433 456665544
No 212
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.20 E-value=1 Score=54.81 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|++|+|+|.|..|..+|..|.+.|++| +|.|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~V-tv~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNV-TAIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeE-EEEcc
Confidence 57999999999999999999999999995 56664
No 213
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=91.17 E-value=1.5 Score=45.48 Aligned_cols=112 Identities=24% Similarity=0.287 Sum_probs=70.0
Q ss_pred CcEEEEeccchHHH-HHHHHHHHCC--CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe-CC
Q 007820 416 GLRCVVSGSGKIAM-HVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DE 491 (588)
Q Consensus 416 GkrVaIQGfGNVG~-~aAe~L~e~G--AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i-~~ 491 (588)
-.||+|+|.|+.+. +.+..+.+.+ +.+++|+|+ | .+++..+. +.|+-.... +-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~-----~-----~~~a~~~a-------------~~~~~~~~~~~~ 59 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR-----D-----PERAEAFA-------------EEFGIAKAYTDL 59 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC-----C-----HHHHHHHH-------------HHcCCCcccCCH
Confidence 36899999997774 4666677665 589999988 3 33322111 112111122 23
Q ss_pred CCcccc-ccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHH---HHHHHCCceEe
Q 007820 492 AKPWNE-RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV---DVLKKANVLIA 551 (588)
Q Consensus 492 ~eil~~-dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~---~iL~~rGI~vi 551 (588)
++++.. ++|+++=|+ .+..+.+.+.+-++.|..++||=-=..+..|+. +.-+++|+.+.
T Consensus 60 ~~ll~~~~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 60 EELLADPDIDAVYIAT-PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred HHHhcCCCCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 455643 488888765 567788888888888999999964333445555 33356665544
No 214
>PRK14851 hypothetical protein; Provisional
Probab=91.06 E-value=1.3 Score=52.06 Aligned_cols=124 Identities=8% Similarity=0.112 Sum_probs=68.9
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
.|++++|+|.|.|-||..+|+.|...|..-+.+.|.+= +++.-|+..-+ ... ..-|. +.++.. .+
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~---~~~-~dvG~--------~Kv~v~-~~ 104 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFG---ARV-PSFGR--------PKLAVM-KE 104 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcC---cCh-hhCCC--------HHHHHH-HH
Confidence 46789999999999999999999999987778887521 12222221100 000 00000 001100 01
Q ss_pred CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCH---HHHHHHHHCCceEecc
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP---EAVDVLKKANVLIAPA 553 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~---eA~~iL~~rGI~viPD 553 (588)
.+.++..++-|-+ ...-|+.+|+..+++ ++.+|+++..++... ...+...++||.++=.
T Consensus 105 ~l~~inP~~~I~~-~~~~i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~ 166 (679)
T PRK14851 105 QALSINPFLEITP-FPAGINADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITA 166 (679)
T ss_pred HHHHhCCCCeEEE-EecCCChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 1222222333332 233467778777655 899999999876322 1224456778877743
No 215
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.96 E-value=1.2 Score=49.04 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.1
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.||..+|..|.+.|..|++ .|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeC
Confidence 6899999999999999999999999654 454
No 216
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.93 E-value=0.75 Score=49.62 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=29.4
Q ss_pred hCCCCCCcEEEEeccchHHHHHHHHHHHCCCeE
Q 007820 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIP 442 (588)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKV 442 (588)
++.++.||||.|.|+|..|+.+|+.|...|..+
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i 188 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVI 188 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcccee
Confidence 467899999999999999999999999999443
No 217
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.60 E-value=1.2 Score=44.05 Aligned_cols=37 Identities=16% Similarity=0.479 Sum_probs=32.9
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+..+|.|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 16 ~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 16 KLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3677899999999999999999999999878888864
No 218
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.53 E-value=0.56 Score=49.44 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=44.0
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccch-HHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGN-VG~~aAe~L~e~GAKVVaVSDs 448 (588)
...|-.|++. +|++.+.++.|++++|+|-+| ||.-++.+|...+++ |+|+.+
T Consensus 136 ~PCTp~gi~~----ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naT-VtvcHs 188 (283)
T COG0190 136 LPCTPAGIMT----LLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANAT-VTVCHS 188 (283)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCE-EEEEcC
Confidence 4688888764 456678899999999999766 899999999999999 688877
No 219
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.45 E-value=1.4 Score=47.55 Aligned_cols=90 Identities=13% Similarity=0.236 Sum_probs=60.1
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCce-EeCC--
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSK-YYDE-- 491 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~-~i~~-- 491 (588)
.|++|+|.|+|-+|..+++++..+|++|++++-+ .++++..+++ ++. ++..
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~-----------~~K~e~a~~l---------------GAd~~i~~~~ 219 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS-----------EEKLELAKKL---------------GADHVINSSD 219 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC-----------hHHHHHHHHh---------------CCcEEEEcCC
Confidence 5899999999999999999999999999888754 2233211111 111 1111
Q ss_pred CCc---cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 492 AKP---WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 492 ~ei---l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
++. +...+|+.+-++. ..|-+++-++++.+-++|.=|.=
T Consensus 220 ~~~~~~~~~~~d~ii~tv~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 220 SDALEAVKEIADAIIDTVG--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred chhhHHhHhhCcEEEECCC--hhhHHHHHHHHhcCCEEEEECCC
Confidence 111 1112899998887 66777777777777777776654
No 220
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=90.43 E-value=7.7 Score=44.27 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCccHHHHHHHH
Q 007820 324 DNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFA 403 (588)
Q Consensus 324 ~~El~R~~r~f~~eL~r~IGp~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~i 403 (588)
..|.-.|...||....+-.||++=|-=.|+++--.-. +.+.|+.-.. ++ .+--.-||-=++.++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfr--lL~kYr~~~c----~F----------NDDIQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFR--LLEKYRNKYC----MF----------NDDIQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHH--HHHHhccccc----ee----------cccccchhHHHHHHH
Confidence 3455678899999999888999999999998732211 3344443211 11 122234665666777
Q ss_pred HHHHHHhCCCCCCcEEEEeccchHHHHHHHHHH----HCCC------eEEEEEcCCCeeeCCC--CCCHHHHHHHHHHhh
Q 007820 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLI----AYGA------IPVSVSDAKGYLVDED--GFDYMKISFLRDIKS 471 (588)
Q Consensus 404 ~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~----e~GA------KVVaVSDs~G~Iydpd--GLDie~L~~L~~~k~ 471 (588)
-.+++..+..|+.-++++.|.|..|..+|+++. +.|. |=+-+.|++|-|...- .|+..+.
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~-------- 369 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKK-------- 369 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhc--------
Confidence 888888899999999999999999999998764 3452 3356777777665432 3443321
Q ss_pred ccCChhhhhhccCCceEeCCCC-ccccccceeecCCC-cCccchhhHHhhhhcCCeEEEecCCCC
Q 007820 472 QQRSLRDYSKTYARSKYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNMP 534 (588)
Q Consensus 472 ~~gsL~~y~~~~p~a~~i~~~e-il~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvEgAN~P 534 (588)
.|++..+..+ +-.+ +-.++-.|||-|+. .+..|++-.+.+.++..+=|+=+=-+|
T Consensus 370 ------~fAk~~~~~~--~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNP 426 (582)
T KOG1257|consen 370 ------PFAKDHEEIK--DLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNP 426 (582)
T ss_pred ------cccccChHHH--HHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCC
Confidence 1111000000 0011 12467788888766 477888888877776665555444445
No 221
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.36 E-value=1.9 Score=45.33 Aligned_cols=126 Identities=16% Similarity=0.079 Sum_probs=66.6
Q ss_pred CcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccC-CceEeCCCCc
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-RSKYYDEAKP 494 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p-~a~~i~~~ei 494 (588)
.++|+|.|.|++|..+|..|.+.|..| .+.++ +.+.+..+.........+... ..+ .....+..+-
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V-~~~~r----------~~~~~~~i~~~~~~~~~~~g~--~~~~~~~~~~~~~e 70 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPV-RLWAR----------RPEFAAALAAERENREYLPGV--ALPAELYPTADPEE 70 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeE-EEEeC----------CHHHHHHHHHhCcccccCCCC--cCCCCeEEeCCHHH
Confidence 358999999999999999999999885 44444 222322233211110001010 001 1222211111
Q ss_pred cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCC--C---CHHHHHHHHH---CCc--eEecccccc
Q 007820 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP--C---TPEAVDVLKK---ANV--LIAPAMAAG 557 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P--~---T~eA~~iL~~---rGI--~viPD~laN 557 (588)
...+||++|-|.....+ .+..+.+ +.++ +|+.-+|+- . +....+++.+ +++ +..|..+..
T Consensus 71 ~~~~aD~Vi~~v~~~~~-~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 71 ALAGADFAVVAVPSKAL-RETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred HHcCCCEEEEECchHHH-HHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 12489999998877754 3333444 2233 666678842 2 3344556655 565 345555444
No 222
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.32 E-value=3.7 Score=43.94 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=60.3
Q ss_pred CcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe-CC-C-
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DE-A- 492 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i-~~-~- 492 (588)
+.+|+|.|.|.+|..++..+...|+..|.++|. + .++|+ ..++.. ++..+ .. +
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~-----~-----~~Rl~---~A~~~~-----------g~~~~~~~~~~ 224 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR-----S-----PERLE---LAKEAG-----------GADVVVNPSED 224 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----C-----HHHHH---HHHHhC-----------CCeEeecCccc
Confidence 339999999999999999999999988888887 3 33432 112111 11111 11 1
Q ss_pred ----Ccc----ccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCC
Q 007820 493 ----KPW----NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC 535 (588)
Q Consensus 493 ----eil----~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~ 535 (588)
.++ ...+|++|.|+- ...+-+.|-.++..+-+++.=|--.+-
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G-~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVG-SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCC-CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 111 136999999987 444456666666677777766665543
No 223
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.26 E-value=0.8 Score=48.23 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=43.5
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccc-hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfG-NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+|..|++.. |++.+.+++|++|+|.|-+ .||..+|.+|...|+. |+++.+
T Consensus 132 ~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~at-Vtv~hs 184 (279)
T PRK14178 132 APCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADAT-VTICHS 184 (279)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCe-eEEEec
Confidence 46898888655 4556889999999999988 8999999999999998 466665
No 224
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.26 E-value=0.9 Score=47.98 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=64.6
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHH-HHHHHHHhhccCChhhhhhccCCceEeCCCCcc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMK-ISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~-L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil 495 (588)
.+|+++|+|++|+..|..|.+.|.. |.+.|. +.++ ...+.+ . +++..+...-.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r----------~~~ka~~~~~~---~------------Ga~~a~s~~ea 54 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNR----------TPEKAAELLAA---A------------GATVAASPAEA 54 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeC----------ChhhhhHHHHH---c------------CCcccCCHHHH
Confidence 4799999999999999999999988 567766 2333 211111 1 22222211112
Q ss_pred ccccceeecCCCc-----Cccchhh--HHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceEec
Q 007820 496 NERCDVAFPCASQ-----NEIDQSD--AINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAP 552 (588)
Q Consensus 496 ~~dcDILIPcA~~-----n~It~en--A~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~viP 552 (588)
...|||+|-|-.- .++.+++ +..+ +.++-+|--....| .+.+..+.++++|+.++=
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~-~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGL-KPGAIVIDMSTISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcC-CCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 3588988877442 3333211 1111 12444444444456 567778899999998874
No 225
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.23 E-value=0.39 Score=51.63 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.|+|+||+|+|+|++|...|+.|...|.+|+...
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~ 46 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGV 46 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEE
Confidence 5899999999999999999999999999976543
No 226
>PRK14982 acyl-ACP reductase; Provisional
Probab=90.04 E-value=0.82 Score=49.34 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEecc-chHHHHHHHHHHH-CCCeEEEEEcC
Q 007820 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDA 448 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~GkrVaIQGf-GNVG~~aAe~L~e-~GAKVVaVSDs 448 (588)
.|.+-....++.+.+.++.+++|++|+|.|. |.+|+.+|+.|.+ .|.+-+.+.++
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 3666666677878888888999999999998 8999999999975 46543555554
No 227
>PRK14852 hypothetical protein; Provisional
Probab=89.63 E-value=1.9 Score=52.41 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=70.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
.|+..+|+|.|.|-||..+|+.|...|..-+.+.|-+= ++..-|+..-+ . +..+. .-+.++. ..+
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~--Ve~SNLNRQ~l---~-------~~~dI--G~~Kaev-aa~ 393 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA--YSPVNLNRQYG---A-------SIASF--GRGKLDV-MTE 393 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE--ecccccccccC---C-------ChhhC--CChHHHH-HHH
Confidence 57889999999999999999999999987788887521 11111211000 0 00000 0000000 001
Q ss_pred CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHH---HHHHHHCCceEecc
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEA---VDVLKKANVLIAPA 553 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA---~~iL~~rGI~viPD 553 (588)
.+.++..+|=|-+-.+ -|+.+|+..+++ ++-+|+++..++.+... .....++||.++=.
T Consensus 394 ~l~~INP~v~I~~~~~-~I~~en~~~fl~-~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~a 455 (989)
T PRK14852 394 RALSVNPFLDIRSFPE-GVAAETIDAFLK-DVDLLVDGIDFFALDIRRRLFNRALELGIPVITA 455 (989)
T ss_pred HHHHHCCCCeEEEEec-CCCHHHHHHHhh-CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence 1222233333333222 357788888764 89999999988755322 23347888877743
No 228
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=89.61 E-value=1 Score=47.53 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=60.9
Q ss_pred cEEEEeccchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CCc
Q 007820 417 LRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~-e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~ei 494 (588)
.+|+|.|.|++|...+..+. ..+..+++|+|. ||+-- .+ . ..+..| + ..+.++ +.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~-----d~es~---~l---a-~A~~~G-i---------~~~~~~~e~l 59 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI-----DPESD---GL---A-RARELG-V---------KTSAEGVDGL 59 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC-----CcccH---HH---H-HHHHCC-C---------CEEECCHHHH
Confidence 48999999999997765555 467899999987 55420 11 0 011111 0 011222 223
Q ss_pred c-ccccceeecCCCcCccchhhHHhhhhcCCeEEEec--CCCC
Q 007820 495 W-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEG--SNMP 534 (588)
Q Consensus 495 l-~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEg--AN~P 534 (588)
+ +.++|+++-|+ .+..+.+.+....+.|+.+|+|- +++|
T Consensus 60 l~~~dIDaV~iaT-p~~~H~e~a~~al~aGk~VIdekPa~~~p 101 (285)
T TIGR03215 60 LANPDIDIVFDAT-SAKAHARHARLLAELGKIVIDLTPAAIGP 101 (285)
T ss_pred hcCCCCCEEEECC-CcHHHHHHHHHHHHcCCEEEECCccccCC
Confidence 3 24789999887 45588888888888999998874 4444
No 229
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.52 E-value=1.1 Score=48.25 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678899999999999999999999998778888864
No 230
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=89.31 E-value=0.53 Score=47.43 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++|++|+|.|.|.||.-=+++|.+.|++|+.+|+.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3789999999999999999999999999999888876
No 231
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.18 E-value=1.5 Score=47.84 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=31.7
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+..+|+|.|.|-+|..+|+.|...|..-+.+.|.
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 57789999999999999999999999877888875
No 232
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.12 E-value=0.74 Score=45.76 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHH--HHCCCeEEEEEcC
Q 007820 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (588)
Q Consensus 396 G~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L--~e~GAKVVaVSDs 448 (588)
||=|.+.++.+-+.++.. ..++|+|.|+|++|..+++.+ ...|.+++++.|.
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 577777666666666655 567999999999999999864 3578999999987
No 233
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.10 E-value=0.48 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHH-HHCCCeEEE
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKL-IAYGAIPVS 444 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L-~e~GAKVVa 444 (588)
+.+|.|++|.|.|+|++|+.+|+.| ...|.+|++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~ 175 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA 175 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999999 557888764
No 234
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=89.04 E-value=0.59 Score=49.71 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+|++|+|+|+||+|...|+.|.+.|..|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57999999999999999999999999876544443
No 235
>PRK06046 alanine dehydrogenase; Validated
Probab=88.97 E-value=3.1 Score=44.20 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=68.8
Q ss_pred CCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccC-CceEeCC-
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-RSKYYDE- 491 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p-~a~~i~~- 491 (588)
.-++|.|.|.|..|++.++.|.. .+.+.|.|.|. ++ +....+.+...+ .++ ..+..++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r-----~~-----~~~~~~~~~~~~---------~~~~~v~~~~~~ 188 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR-----TK-----SSAEKFVERMSS---------VVGCDVTVAEDI 188 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC-----CH-----HHHHHHHHHHHh---------hcCceEEEeCCH
Confidence 34699999999999999988864 57888888887 22 332222221110 011 1222222
Q ss_pred CCccccccceeecCCCcCc--cchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEe
Q 007820 492 AKPWNERCDVAFPCASQNE--IDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (588)
Q Consensus 492 ~eil~~dcDILIPcA~~n~--It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~vi 551 (588)
++.+. +||++-|+.... ++.+ .| +.++.|.+=|++.|-..|.+..+.++.-+|+
T Consensus 189 ~~~l~--aDiVv~aTps~~P~~~~~---~l-~~g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 189 EEACD--CDILVTTTPSRKPVVKAE---WI-KEGTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred HHHhh--CCEEEEecCCCCcEecHH---Hc-CCCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 23343 999998776432 3333 22 5699999999999977776655555554444
No 236
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=88.95 E-value=1.3 Score=45.77 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=58.3
Q ss_pred EeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccc
Q 007820 421 VSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCD 500 (588)
Q Consensus 421 IQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcD 500 (588)
|.|+|++|..+|+.|.+.|.+| .+.|. +.+++..+.+ . ++...+...-.-.+||
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V-~v~dr----------~~~~~~~l~~----~-----------g~~~~~s~~~~~~~ad 54 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPV-RVFDL----------FPDAVEEAVA----A-----------GAQAAASPAEAAEGAD 54 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeE-EEEeC----------CHHHHHHHHH----c-----------CCeecCCHHHHHhcCC
Confidence 4799999999999999999985 45554 2233222221 1 1111111111224789
Q ss_pred eeecCCCcCccchhhH---Hhhh---hcCCeEEEecCCC-C-CCHHHHHHHHHCCceEecc
Q 007820 501 VAFPCASQNEIDQSDA---INLV---NSGCRILVEGSNM-P-CTPEAVDVLKKANVLIAPA 553 (588)
Q Consensus 501 ILIPcA~~n~It~enA---~~l~---~~~akiVvEgAN~-P-~T~eA~~iL~~rGI~viPD 553 (588)
|+|-|-.......+-. ..+. ..+ ++|+.-... | ++.+..+.+.++|+.|+--
T Consensus 55 vVil~vp~~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 55 RVITMLPAGQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred EEEEeCCChHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 9988766533222111 1121 223 455555543 4 3455567888899988754
No 237
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.84 E-value=0.54 Score=50.43 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=33.8
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|++++|+|.|.|.+|.++|+.|.+.|..-++|.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5788999999999999999999999998778888874
No 238
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.73 E-value=1.1 Score=48.11 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=29.9
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
...-+|+|.|.|-||..+|+...-+||+ |+|-|.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~ 199 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDL 199 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe-eEEEec
Confidence 4556899999999999999999999999 578775
No 239
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.64 E-value=2.5 Score=43.67 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.0
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeC
Confidence 479999999999999999999999854 5565
No 240
>PLN02688 pyrroline-5-carboxylate reductase
Probab=88.61 E-value=2.7 Score=42.60 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred cEEEEeccchHHHHHHHHHHHCCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGA 440 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GA 440 (588)
++|.|+|+|++|..+++.|.+.|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 479999999999999999999886
No 241
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.59 E-value=2.9 Score=47.04 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCC--CeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~G--AKVVaVSDs 448 (588)
++|+|.|.|.||..+|-.|.+.| .+|+++ |.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D~ 34 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-DI 34 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-EC
Confidence 57999999999999999999985 777766 53
No 242
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.49 E-value=1.5 Score=47.84 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=29.0
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+.++|.|.|+|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~-V~g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVY-VIGVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCE-EEEEeC
Confidence 457899999999999999999999998 566776
No 243
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.44 E-value=1.6 Score=42.40 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.6
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
+|+|.|.|.+|..+|+.|.+.|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998767888863
No 244
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=88.43 E-value=4.4 Score=36.83 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=57.2
Q ss_pred cEEEEec----cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 417 LRCVVSG----SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 417 krVaIQG----fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
|+|+|.| -++.|..+.+.|.+.|.+|+.|.-..+.|. |+ . .|++..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~---G~------------------~----~y~sl~----- 50 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL---GI------------------K----CYPSLA----- 50 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET---TE------------------E-----BSSGG-----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC---cE------------------E----eecccc-----
Confidence 6899999 599999999999999999888743322221 11 1 122211
Q ss_pred CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEe-cc
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA-PA 553 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~vi-PD 553 (588)
++ -.++|+++-|.....+ .+-.+.+.+.+++.|.=-+- -.++++.+.+++.|+.++ |.
T Consensus 51 e~-p~~iDlavv~~~~~~~-~~~v~~~~~~g~~~v~~~~g-~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 51 EI-PEPIDLAVVCVPPDKV-PEIVDEAAALGVKAVWLQPG-AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp GC-SST-SEEEE-S-HHHH-HHHHHHHHHHT-SEEEE-TT-S--HHHHHHHHHTT-EEEESS
T ss_pred CC-CCCCCEEEEEcCHHHH-HHHHHHHHHcCCCEEEEEcc-hHHHHHHHHHHHcCCEEEeCC
Confidence 11 2477877777654333 22233333335554432221 566888999999999988 64
No 245
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=88.16 E-value=0.5 Score=51.21 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.-++|+|.||||.|+..|+.|.+.|..+++.+-+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRs 84 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS 84 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcc
Confidence 3468999999999999999999999997766544
No 246
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.14 E-value=5.8 Score=40.35 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.1
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCe-EEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAK-VVaVSDs 448 (588)
..|.+|+|.|.|.||..++..+..+|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3789999999999999999999999997 5544 54
No 247
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.12 E-value=0.7 Score=49.66 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVa 444 (588)
.|+|++|+|+|+|++|...|+.|.+.|.+|+.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999999998654
No 248
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.10 E-value=2.3 Score=43.15 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=58.1
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeE--EEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-CC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIP--VSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKV--VaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~e 493 (588)
++|.|.|+|++|+.+++.|.+.|..+ +.++|+ +.+++..+.. .+++.+..++ .+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r----------~~~~~~~l~~-------------~~~~~~~~~~~~~ 57 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR----------NAQIAARLAE-------------RFPKVRIAKDNQA 57 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC----------CHHHHHHHHH-------------HcCCceEeCCHHH
Confidence 37999999999999999999887532 344543 2333211111 1222222222 22
Q ss_pred ccccccceeecCCCcCccchhhHHhhh-hcCCeEEEecCCCCCCHHHHHHHHHC---CceEecc
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLV-NSGCRILVEGSNMPCTPEAVDVLKKA---NVLIAPA 553 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~-~~~akiVvEgAN~P~T~eA~~iL~~r---GI~viPD 553 (588)
+ -.+|||+|-|.....+ .+-...+. ..+ ++|+-=+ .+++.+..+.+.+. -+.++|-
T Consensus 58 ~-~~~aDvVilav~p~~~-~~vl~~l~~~~~-~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~ 117 (258)
T PRK06476 58 V-VDRSDVVFLAVRPQIA-EEVLRALRFRPG-QTVISVI-AATDRAALLEWIGHDVKLVRAIPL 117 (258)
T ss_pred H-HHhCCEEEEEeCHHHH-HHHHHHhccCCC-CEEEEEC-CCCCHHHHHHHhCCCCCEEEECCC
Confidence 2 2478999988875433 22222221 123 3444433 56666555444443 2445664
No 249
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=88.02 E-value=1.6 Score=46.67 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=60.4
Q ss_pred cEEEEecc-chHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
++|+|.|. |.||+.+++.|.+. +.+++++++. ...|-...+ . .+.+... ....+-+.++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-----~~~g~~l~~------~---~~~~~~~----~~~~~~~~~~~ 64 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-----SSAGKPLSD------V---HPHLRGL----VDLVLEPLDPE 64 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-----cccCcchHH------h---Ccccccc----cCceeecCCHH
Confidence 68999996 99999999999876 7899998884 222211111 0 0001100 01111111111
Q ss_pred cccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCC
Q 007820 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT 536 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T 536 (588)
...++|+++-|. .+....+.+..+.+.++.+|=-++.....
T Consensus 65 ~~~~vD~Vf~al-P~~~~~~~v~~a~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLAL-PHGVSMDLAPQLLEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECC-CcHHHHHHHHHHHhCCCEEEECCcccCCC
Confidence 224799998866 45677888888777777776655555443
No 250
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.80 E-value=2.2 Score=47.92 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.0
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|+|.|++|...|..|...|..| .+.|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V-~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDV-AVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 48999999999999999999999985 56665
No 251
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.74 E-value=8.7 Score=39.74 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCe-EEEEE
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVS 446 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAK-VVaVS 446 (588)
..|.+|+|.|.|.||..+++.+...|++ |+++.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~ 195 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVD 195 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 3589999999999999999999999999 76643
No 252
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.52 E-value=1.1 Score=46.38 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.2
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|++|..+|..|...|..| .+.|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V-~l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDV-LLNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeE-EEEeC
Confidence 58999999999999999999999985 45565
No 253
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.52 E-value=2.9 Score=47.41 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=60.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~ 496 (588)
-+++|.|+|++|+.+|+.|.+.|..++ +.|. |.++++.+ ++. + ..-+ +.++ ++.+.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~----------d~~~~~~~---~~~-g-~~~i---~GD~---~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET----------SRTRVDEL---RER-G-IRAV---LGNA---ANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHH---HHC-C-CeEE---EcCC---CCHHHHH
Confidence 378999999999999999999998864 4555 23333212 211 1 0000 0011 1122231
Q ss_pred ----cccceeecCCCcCccch---hhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceE
Q 007820 497 ----ERCDVAFPCASQNEIDQ---SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLI 550 (588)
Q Consensus 497 ----~dcDILIPcA~~n~It~---enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~v 550 (588)
.+||.++=+...+.-+. ..+.+. ...+++|+-.. +++..+.|++.|+-+
T Consensus 476 ~a~i~~a~~viv~~~~~~~~~~iv~~~~~~-~~~~~iiar~~----~~~~~~~l~~~Gad~ 531 (558)
T PRK10669 476 LAHLDCARWLLLTIPNGYEAGEIVASAREK-RPDIEIIARAH----YDDEVAYITERGANQ 531 (558)
T ss_pred hcCccccCEEEEEcCChHHHHHHHHHHHHH-CCCCeEEEEEC----CHHHHHHHHHcCCCE
Confidence 37887665554432221 222332 34678888643 467888899888644
No 254
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.49 E-value=0.98 Score=51.03 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=27.6
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|+|.|.+|...|..|...|..| .+.|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V-~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTV-LLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 58999999999999999999999985 56676
No 255
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.36 E-value=0.93 Score=50.03 Aligned_cols=40 Identities=33% Similarity=0.528 Sum_probs=34.2
Q ss_pred HHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 408 ~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+.+.++++++|+|.|.|.+|..+|+.|.+.|.+ |.++|.
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~ 47 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDD 47 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 3456678899999999999999999999999999 566764
No 256
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=87.18 E-value=1.1 Score=46.84 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=64.9
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCcccc
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNE 497 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~ 497 (588)
+|.|+|.|++|..+|+.|.+.|..| .|.|. ++. .++ +.. . ++...+...-...
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v-~v~~~-----~~~---~~~---~~~----~-----------g~~~~~s~~~~~~ 54 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQL-HVTTI-----GPV---ADE---LLS----L-----------GAVSVETARQVTE 54 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeE-EEEeC-----CHh---HHH---HHH----c-----------CCeecCCHHHHHh
Confidence 6999999999999999999999875 46665 221 111 111 1 1221111111224
Q ss_pred ccceeecCCCcCc-----cchhh--HHhhhhcCCeEEEecCC-CC-CCHHHHHHHHHCCceEeccccccccCce
Q 007820 498 RCDVAFPCASQNE-----IDQSD--AINLVNSGCRILVEGSN-MP-CTPEAVDVLKKANVLIAPAMAAGAGGVV 562 (588)
Q Consensus 498 dcDILIPcA~~n~-----It~en--A~~l~~~~akiVvEgAN-~P-~T~eA~~iL~~rGI~viPD~laNAGGVi 562 (588)
.||++|-|-.... +..++ +..+ ..-++|++-.. .| ++.+..+.+.++|+.|+-.- -+||..
T Consensus 55 ~advVi~~v~~~~~v~~v~~~~~g~~~~~--~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~ 124 (292)
T PRK15059 55 ASDIIFIMVPDTPQVEEVLFGENGCTKAS--LKGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEI 124 (292)
T ss_pred cCCEEEEeCCChHHHHHHHcCCcchhccC--CCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHH
Confidence 8899987765331 11111 1111 12356666554 45 45566788899999887532 355554
No 257
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.13 E-value=1.1 Score=46.85 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.2
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|...|..|...|.. |.+-|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~ 36 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFET 36 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEEC
Confidence 3899999999999999999999998 556665
No 258
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=87.11 E-value=4.7 Score=42.94 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC-C
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~-~ 492 (588)
.-+++.|.|.|+.|++-++.|.. ...+-|.|.|. +.++...+.+... .+ .......++ +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------~~~~~~~~~~~~~------~~---g~~v~~~~~~~ 187 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------TPSTREKFALRAS------DY---EVPVRAATDPR 187 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------CHHHHHHHHHHHH------hh---CCcEEEeCCHH
Confidence 35799999999999987777654 23444666665 3333322222111 11 001222222 2
Q ss_pred CccccccceeecCCCcC--ccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEeccc
Q 007820 493 KPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (588)
Q Consensus 493 eil~~dcDILIPcA~~n--~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~ 554 (588)
+.. .+|||++-|+... .++.+ . ++.++.+++=|++.|-..|.+..+.++.- ++-|-
T Consensus 188 eav-~~aDiVitaT~s~~P~~~~~---~-l~~g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~ 245 (325)
T TIGR02371 188 EAV-EGCDILVTTTPSRKPVVKAD---W-VSEGTHINAIGADAPGKQELDPEILKNAK-IFVDD 245 (325)
T ss_pred HHh-ccCCEEEEecCCCCcEecHH---H-cCCCCEEEecCCCCcccccCCHHHHhcCc-EEECC
Confidence 222 5899999877543 23333 2 36699999999999977776655444443 33454
No 259
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.06 E-value=1.3 Score=46.86 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=42.1
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHH----CCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e----~GAKVVaVSDs 448 (588)
..+|..||+. +|++.+.+++||+|+|.| +..||.-++.+|.+ .+|.| +++.+
T Consensus 137 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtV-t~~hs 193 (286)
T PRK14184 137 RPCTPAGVMT----LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATV-TVCHS 193 (286)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEE-EEEeC
Confidence 4578888765 455678999999999999 57789999999998 78884 66665
No 260
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.67 E-value=1 Score=49.10 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++|++|.|.|.|..|..+|+.|.+.|++| .++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V-~~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANV-TVNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEE-EEEcC
Confidence 468999999999999999999999999994 66775
No 261
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.67 E-value=1.1 Score=43.63 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.+++++|+|.| .|.+|.++++.|.+.|++|+.++-
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999 699999999999999999776643
No 262
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=86.67 E-value=1.8 Score=46.56 Aligned_cols=127 Identities=16% Similarity=0.225 Sum_probs=75.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
=+.||-++|-|+|+||...|..|.-.|++| .|.+. || | -+|...++ +| +...-+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~V-ivTEi-----DP--I--~ALQAaMe---------G~-------~V~tm~ 264 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARV-IVTEI-----DP--I--CALQAAME---------GY-------EVTTLE 264 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEE-EEecc-----Cc--h--HHHHHHhh---------cc-------EeeeHH
Confidence 478999999999999999999999999985 56654 33 2 23321111 22 211111
Q ss_pred CccccccceeecCCC-cCccchhhHHhhhhcCCeEEEe-----------cCCCC------CCHHHHHHHHHCC---ceEe
Q 007820 493 KPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVE-----------GSNMP------CTPEAVDVLKKAN---VLIA 551 (588)
Q Consensus 493 eil~~dcDILIPcA~-~n~It~enA~~l~~~~akiVvE-----------gAN~P------~T~eA~~iL~~rG---I~vi 551 (588)
+ -..++|||+-++. .++|+.+--+++ ++.| |||. +-|-| +-|..+++....| |+.+
T Consensus 265 e-a~~e~difVTtTGc~dii~~~H~~~m-k~d~-IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLA 341 (434)
T KOG1370|consen 265 E-AIREVDIFVTTTGCKDIITGEHFDQM-KNDA-IVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLA 341 (434)
T ss_pred H-hhhcCCEEEEccCCcchhhHHHHHhC-cCCc-EEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEe
Confidence 1 1247799998765 488888888877 2333 3331 22222 1234445555555 4556
Q ss_pred ccccccccCce-eeeccc
Q 007820 552 PAMAAGAGGVV-AGELEL 568 (588)
Q Consensus 552 PD~laNAGGVi-vS~~E~ 568 (588)
-+-+.|-|=.+ .+.|-+
T Consensus 342 eGRLvNL~CatghpSFvm 359 (434)
T KOG1370|consen 342 EGRLVNLGCATGHPSFVM 359 (434)
T ss_pred cCceeecccccCCCceEE
Confidence 67777776555 333433
No 263
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=86.66 E-value=2.1 Score=45.80 Aligned_cols=122 Identities=22% Similarity=0.213 Sum_probs=71.8
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHH
Q 007820 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (588)
Q Consensus 386 GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~ 464 (588)
=|.+|-+.-|+|--++ + ....-+|+||.|+| +|.||+-+-++..-+|.+||+++-|+- +..
T Consensus 131 lg~lGm~glTAy~Gf~---e----i~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E-----------Kv~ 192 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFY---E----ICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE-----------KVD 192 (343)
T ss_pred hhccCCchhHHHHHHH---H----hcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh-----------hhh
Confidence 3556666677765443 3 33445789999999 599999999988889999999998821 211
Q ss_pred HHHHHhhccCChhhhhhccCCceEeCC--CCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCC
Q 007820 465 FLRDIKSQQRSLRDYSKTYARSKYYDE--AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 465 ~L~~~k~~~gsL~~y~~~~p~a~~i~~--~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (588)
.| +.+.|--..| .|..-..++. ...+..-.||++.--.++.++.-- .. .+...+|++.|+=
T Consensus 193 ll---~~~~G~d~af--NYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl-~n-M~~~gri~~CG~I 255 (343)
T KOG1196|consen 193 LL---KTKFGFDDAF--NYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVL-LN-MNLHGRIAVCGMI 255 (343)
T ss_pred hh---HhccCCccce--eccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHH-Hh-hhhccceEeeeee
Confidence 11 1221111111 0100000000 012345679999987777665432 22 2568899999873
No 264
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.62 E-value=0.99 Score=49.17 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++|+|.|.|.+|..+|+.|.+.|+.| .++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V-~~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKV-ILTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 578999999999999999999999999995 56666
No 265
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.51 E-value=1.8 Score=45.90 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=41.7
Q ss_pred CCccHHHHHHHHHHHHHHhCCCCCCcEEEEec-cchHHHHHHHHHHH----CCCeEEEEEcC
Q 007820 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (588)
Q Consensus 392 ~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQG-fGNVG~~aAe~L~e----~GAKVVaVSDs 448 (588)
..+|..|++ ++|+..+.+++||+|+|.| +..||.-+|.+|.+ .|+. |+++.+
T Consensus 139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at-Vt~~hs 195 (295)
T PRK14174 139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT-VTICHS 195 (295)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE-EEEEeC
Confidence 468988874 5566678899999999999 56789999999987 6787 466655
No 266
>PRK07877 hypothetical protein; Provisional
Probab=86.47 E-value=0.64 Score=54.80 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=70.5
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCC-eEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GA-KVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~ 491 (588)
.|+.++|+|.|.| ||+++|..|...|. --+.+.|. |=++..-|.++. +.. ..+. -+.++. ..
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~-------D~ve~sNLnRq~-~~~--~diG-----~~Kv~~-a~ 166 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF-------DTLELSNLNRVP-AGV--FDLG-----VNKAVV-AA 166 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC-------CEEccccccccc-CCh--hhcc-----cHHHHH-HH
Confidence 5788999999999 99999999999994 44667765 222222221110 000 0000 000100 00
Q ss_pred CCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHH-HHHHHHHCCceEeccccccccCce
Q 007820 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPE-AVDVLKKANVLIAPAMAAGAGGVV 562 (588)
Q Consensus 492 ~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~e-A~~iL~~rGI~viPD~laNAGGVi 562 (588)
..+..+.-+|=|-+ ...-|+.+|+..+++ ++.+|+++..+.-+.- ..+.-.++||.++= .+.++|.+
T Consensus 167 ~~l~~inp~i~v~~-~~~~i~~~n~~~~l~-~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~--~~~~~g~~ 234 (722)
T PRK07877 167 RRIAELDPYLPVEV-FTDGLTEDNVDAFLD-GLDVVVEECDSLDVKVLLREAARARRIPVLM--ATSDRGLL 234 (722)
T ss_pred HHHHHHCCCCEEEE-EeccCCHHHHHHHhc-CCCEEEECCCCHHHHHHHHHHHHHcCCCEEE--EcCCCCCc
Confidence 11222333333332 234467788887754 6888888887653322 23445677888773 34455655
No 267
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.39 E-value=1.1 Score=50.66 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|+|.|.+|..+|..|...|..| .+.|.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V-~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQV-LLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 57999999999999999999999985 46665
No 268
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.18 E-value=3.3 Score=47.96 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=65.3
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccc
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~ 496 (588)
.+|+|.|||.+|+.+++.|.+.|..++ +.|. |.+.++.+. +. |. .-| |.++ +..+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~---~~-g~-~v~---~GDa---t~~~~L~ 458 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH----------DPDHIETLR---KF-GM-KVF---YGDA---TRMDLLE 458 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHH---hc-CC-eEE---EEeC---CCHHHHH
Confidence 589999999999999999999999865 4466 333432222 11 10 000 1111 1122331
Q ss_pred ----cccceeecCCCcCccchhh---HHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEe
Q 007820 497 ----ERCDVAFPCASQNEIDQSD---AINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (588)
Q Consensus 497 ----~dcDILIPcA~~n~It~en---A~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~vi 551 (588)
.++|.+|-|.-..+.|... |+++ ....++|+-.. +++....|++.|+.++
T Consensus 459 ~agi~~A~~vvv~~~d~~~n~~i~~~ar~~-~p~~~iiaRa~----d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQTSLQLVELVKEH-FPHLQIIARAR----DVDHYIRLRQAGVEKP 515 (621)
T ss_pred hcCCCcCCEEEEEeCCHHHHHHHHHHHHHh-CCCCeEEEEEC----CHHHHHHHHHCCCCEE
Confidence 3788888777654555433 3332 24678888553 4567788999998654
No 269
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.13 E-value=3.3 Score=47.69 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=67.9
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCcc-
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW- 495 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil- 495 (588)
.+|+|.|+|.+|+.+++.|.+.|..+ .+.|. | .+.++.+ ++ .|. .-+ |.++ +..++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~v-vvID~-----d-----~~~v~~~---~~-~g~-~v~---~GDa---t~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRI-TVLER-----D-----ISAVNLM---RK-YGY-KVY---YGDA---TQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCE-EEEEC-----C-----HHHHHHH---Hh-CCC-eEE---EeeC---CCHHHHH
Confidence 47999999999999999999999985 45565 3 3333212 11 111 000 1111 112233
Q ss_pred ---ccccceeecCCCcCccchhhHHhhh--hcCCeEEEecCCCCCCHHHHHHHHHCCceE-ecccc
Q 007820 496 ---NERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVLI-APAMA 555 (588)
Q Consensus 496 ---~~dcDILIPcA~~n~It~enA~~l~--~~~akiVvEgAN~P~T~eA~~iL~~rGI~v-iPD~l 555 (588)
-.+||++|=|.-..+.|...+..+. ...+++|+-+. +++..+.|++.|+.. +|...
T Consensus 459 ~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 459 AAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred hcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHH
Confidence 2488988877655444433322221 34678888664 467788999999864 46544
No 270
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.12 E-value=1.4 Score=45.72 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.9
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|++|..+|..|...|..| .+.|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V-~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDV-WLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeE-EEEeC
Confidence 58999999999999999999999885 45565
No 271
>PRK08328 hypothetical protein; Provisional
Probab=86.10 E-value=0.94 Score=45.87 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.|++++|+|.|.|-+|..+|+.|...|..-+.+.|.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467889999999999999999999999877777765
No 272
>PLN02712 arogenate dehydrogenase
Probab=86.07 E-value=1.2 Score=52.20 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=31.9
Q ss_pred hCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
.+.++++++|+|+|+|++|+.+|+.|.+.|..|+++
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~ 398 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAY 398 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEE
Confidence 466889999999999999999999999999887644
No 273
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=86.06 E-value=1.1 Score=43.90 Aligned_cols=34 Identities=26% Similarity=0.136 Sum_probs=27.4
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|++|+|+|.|||+-|..-|.-|.+.|..| .|...
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V-~Vglr 35 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNV-IVGLR 35 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EE-EEEE-
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCE-EEEec
Confidence 58999999999999999999999999985 45544
No 274
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.86 E-value=2.9 Score=43.04 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.9
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|..+|..|...|..|+ +.|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeC
Confidence 479999999999999999999999854 4565
No 275
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=85.86 E-value=2 Score=46.17 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=61.0
Q ss_pred cEEEEecc-chHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceE--eCCC
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY--YDEA 492 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~--i~~~ 492 (588)
++|+|.|. |-||+.+++.|.+. +.+++++.+++. ..|-.+... ...+... .+..+ .+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~----sagk~~~~~---------~~~l~~~----~~~~~~~~~~~ 63 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE----SAGKPVSEV---------HPHLRGL----VDLNLEPIDEE 63 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch----hcCCChHHh---------Ccccccc----CCceeecCCHH
Confidence 47999998 99999999999876 788887866521 122111110 0001000 01111 1112
Q ss_pred CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCC
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT 536 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T 536 (588)
++. .+||++|-|. .+....+-+..+.+.++++|-=++..-..
T Consensus 64 ~~~-~~~DvVf~al-P~~~s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 64 EIA-EDADVVFLAL-PHGVSAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred Hhh-cCCCEEEECC-CchHHHHHHHHHHhCCCEEEeCChhhhcC
Confidence 222 3799999877 55677888888878888887666654443
No 276
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=85.75 E-value=3.9 Score=41.58 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.9
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
++++|.|.||+|..+|+.|...|..|+-.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~ig 30 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIG 30 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEe
Confidence 58999999999999999999999996533
No 277
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.69 E-value=1.1 Score=44.59 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
.|+.++|+|.|.|-+|+.+|+.|.+.|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5788999999999999999999999998667888864
No 278
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.62 E-value=6.2 Score=41.46 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=51.9
Q ss_pred CCcEEEEeccchHHHHHHHHHHH-CC-CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIA-YG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e-~G-AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
.|.+|+|.|.|.||..++..+.. .| ++|+ ++|. ++ ++++.++. -+ +.+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~~-----~~-----~k~~~a~~----~~-----------~~~~~~~ 216 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLV-VFGK-----HQ-----EKLDLFSF----AD-----------ETYLIDD 216 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEeC-----cH-----hHHHHHhh----cC-----------ceeehhh
Confidence 58899999999999999998876 55 4554 4444 22 23321111 01 1110000
Q ss_pred CccccccceeecCCCc--CccchhhHHhhhhcCCeEEEec
Q 007820 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEG 530 (588)
Q Consensus 493 eil~~dcDILIPcA~~--n~It~enA~~l~~~~akiVvEg 530 (588)
..-...+|++|.|+.. +.-+-+.+-++++.+.++|.=|
T Consensus 217 ~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 217 IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred hhhccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 0001248999998864 2234455666667778877554
No 279
>PLN02858 fructose-bisphosphate aldolase
Probab=85.54 E-value=3 Score=52.74 Aligned_cols=111 Identities=7% Similarity=0.049 Sum_probs=65.6
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
..++|.++|+|++|...|+-|.+.|+.| .+-|. +.++...+.+ . ++...+.-.-
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v-~v~dr----------~~~~~~~l~~---~------------Ga~~~~s~~e 56 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKV-QAFEI----------STPLMEKFCE---L------------GGHRCDSPAE 56 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeE-EEEcC----------CHHHHHHHHH---c------------CCeecCCHHH
Confidence 3568999999999999999999999985 45554 2333322221 1 2322221111
Q ss_pred cccccceeecCCCcCccchhhH---Hhhhh---cCCeEEEe-cCCCC-CCHHHHHHHHHCC--ceEec
Q 007820 495 WNERCDVAFPCASQNEIDQSDA---INLVN---SGCRILVE-GSNMP-CTPEAVDVLKKAN--VLIAP 552 (588)
Q Consensus 495 l~~dcDILIPcA~~n~It~enA---~~l~~---~~akiVvE-gAN~P-~T~eA~~iL~~rG--I~viP 552 (588)
+...||++|-|-.......+-. ..+.. .+ ++|++ +...| ++.+..+.+.++| +.|+=
T Consensus 57 ~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lD 123 (1378)
T PLN02858 57 AAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVD 123 (1378)
T ss_pred HHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 2347899998866543322211 11211 23 35554 44556 5567778899999 87763
No 280
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.51 E-value=1.3 Score=43.42 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++||+++|.|. |.+|.++|+.|.+.|+.|+.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999996 8999999999999999977664
No 281
>PRK05717 oxidoreductase; Validated
Probab=85.38 E-value=1.4 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
+.+++||+|+|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 3578999999998 5999999999999999997654
No 282
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=85.26 E-value=4.7 Score=45.23 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++.+++|+|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~-v~v~D~ 38 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAE-VTVSDD 38 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCe-EEEEcC
Confidence 35589999999999999999999999999 578886
No 283
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.13 E-value=1.4 Score=43.62 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+.+++|++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 4578999999998 58999999999999999976553
No 284
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.07 E-value=1.6 Score=42.60 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999997 8999999999999999976554
No 285
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.03 E-value=1.2 Score=49.60 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+.|++|+|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcC
Confidence 5789999999999999999999999999 467886
No 286
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.75 E-value=3.1 Score=43.08 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=65.6
Q ss_pred cEEEEeccchHHHHHHHHHHHCC----CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~G----AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ 492 (588)
.+|.|.|+|++|..+++.|.+.| .+|+.++.+ + .+++..+. . . +++.+...+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~------~----~~~~~~l~---~------~----~~~~~~~~~~ 58 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS------K----NEHFNQLY---D------K----YPTVELADNE 58 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC------c----HHHHHHHH---H------H----cCCeEEeCCH
Confidence 37999999999999999999988 465544432 1 11221111 1 1 1222221211
Q ss_pred CccccccceeecCCCcCccchhhHHhhh---hcCCeEEEecCCCCCCHHHHHHHHHCC-ceEecccccccc
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNMPCTPEAVDVLKKAN-VLIAPAMAAGAG 559 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~---~~~akiVvEgAN~P~T~eA~~iL~~rG-I~viPD~laNAG 559 (588)
.-+..+||++|-|.....+. +-+..+. ..++ +|+--+|+-...+-.+.|-... |.++|-..+-.|
T Consensus 59 ~e~~~~aDvVilavpp~~~~-~vl~~l~~~l~~~~-~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g 127 (277)
T PRK06928 59 AEIFTKCDHSFICVPPLAVL-PLLKDCAPVLTPDR-HVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVG 127 (277)
T ss_pred HHHHhhCCEEEEecCHHHHH-HHHHHHHhhcCCCC-EEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHh
Confidence 11234899999887654432 3333331 2343 5666778766556666664323 467887665544
No 287
>PLN02858 fructose-bisphosphate aldolase
Probab=84.64 E-value=3.3 Score=52.32 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=66.4
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCc
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~ei 494 (588)
..++|.+.|+|++|..+|+.|...|..| .+.|. +.+++..+.. . ++...+...-
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V-~v~dr----------~~~~~~~l~~---~------------Ga~~~~s~~e 376 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSV-CGYDV----------YKPTLVRFEN---A------------GGLAGNSPAE 376 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEE-EEEeC----------CHHHHHHHHH---c------------CCeecCCHHH
Confidence 3578999999999999999999999985 45454 2233221111 0 2222211111
Q ss_pred cccccceeecCCCc-----Cccchh--hHHhhhhcCCeEEEecCCCC-CCHHHHHHHHH--CCceEeccccccccCce
Q 007820 495 WNERCDVAFPCASQ-----NEIDQS--DAINLVNSGCRILVEGSNMP-CTPEAVDVLKK--ANVLIAPAMAAGAGGVV 562 (588)
Q Consensus 495 l~~dcDILIPcA~~-----n~It~e--nA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~--rGI~viPD~laNAGGVi 562 (588)
+...|||+|-|-.. .++.++ -...+ ..+.-+|-.....| ++.+..+.+.+ +|+.|+=.-+ +||..
T Consensus 377 ~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l-~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPV--sGg~~ 451 (1378)
T PLN02858 377 VAKDVDVLVIMVANEVQAENVLFGDLGAVSAL-PAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPV--SGGVK 451 (1378)
T ss_pred HHhcCCEEEEecCChHHHHHHHhchhhHHhcC-CCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccC--CCChh
Confidence 23479999977653 222111 11222 23434444444456 45566677888 8988763333 44443
No 288
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.64 E-value=11 Score=40.85 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++..++++|.|+|.+|+.+++.|.+.|..|+ +.|.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~ 262 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIER 262 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 4567899999999999999999999999864 4455
No 289
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.55 E-value=1.6 Score=42.08 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=29.4
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.++|++++|.|. |-+|+.+++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 478999999985 9999999999999999965553
No 290
>PRK06841 short chain dehydrogenase; Provisional
Probab=84.52 E-value=1.7 Score=42.89 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++|+|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 58899999999 59999999999999999976554
No 291
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.51 E-value=1.6 Score=43.16 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=30.4
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++||+++|.|. |.+|..+|+.|.+.|++|+ +.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 578999999985 9999999999999999975 4454
No 292
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=84.29 E-value=7.4 Score=40.54 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.0
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|.+|+|.|.|.||..+++.+..+|+++|.+.|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 46889999999999999999999999986555554
No 293
>PRK06153 hypothetical protein; Provisional
Probab=84.25 E-value=0.67 Score=50.89 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.|++++|+|.|.|-+|+++++.|.+.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 467889999999999999999999999866777765
No 294
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=84.14 E-value=3 Score=45.11 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=68.5
Q ss_pred CcEEEEeccchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~--GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e 493 (588)
-.||+|.|.| .|..-++.+.+. ++++++|+|. |.++...+.+ +.+ + | .+-+-++
T Consensus 3 ~~rVgViG~~-~G~~h~~al~~~~~~~eLvaV~d~----------~~erA~~~A~---~~g-i-------~--~y~~~ee 58 (343)
T TIGR01761 3 VQSVVVCGTR-FGQFYLAAFAAAPERFELAGILAQ----------GSERSRALAH---RLG-V-------P--LYCEVEE 58 (343)
T ss_pred CcEEEEEeHH-HHHHHHHHHHhCCCCcEEEEEEcC----------CHHHHHHHHH---HhC-C-------C--ccCCHHH
Confidence 4689999994 688777777764 5899999998 3333321221 111 1 1 1111233
Q ss_pred cc-cccccee-ecCCCcCccchhhHHhhhhcCCeEEEecCCCCCC-HHHHHHH---HHCCceEe
Q 007820 494 PW-NERCDVA-FPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT-PEAVDVL---KKANVLIA 551 (588)
Q Consensus 494 il-~~dcDIL-IPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T-~eA~~iL---~~rGI~vi 551 (588)
++ +.++|++ +|.++.|..+.+.|...++.|..+++|= |++ .||.+++ +++|+.+.
T Consensus 59 ll~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK---Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 59 LPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEH---PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC---CCCHHHHHHHHHHHHHcCCEEE
Confidence 44 3455544 4556678888888888888999999995 544 4555443 56777766
No 295
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.12 E-value=1.4 Score=48.67 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.6
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-+.+++|.|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 45 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAK-VTAFDK 45 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCE-EEEECC
Confidence 45689999999999999999999999998 678886
No 296
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.06 E-value=1.5 Score=44.76 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.++|++|+|+|.|.||..=++.|.+.||+|.-||-
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 67799999999999999999999999999766654
No 297
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.02 E-value=17 Score=35.28 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 408 ~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..+..-.+|.+|+|.|.|.+|+.+++.+...|++|++++.+
T Consensus 127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 33333357889999999999999999999999998766543
No 298
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.92 E-value=2 Score=44.50 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=26.7
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|..+|..|.+.|..| .+.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V-~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDV-TIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeE-EEEeC
Confidence 48999999999999999999999885 45554
No 299
>PLN02240 UDP-glucose 4-epimerase
Probab=83.69 E-value=1.8 Score=45.01 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.7
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++|+|.|. |.||+++++.|.+.|++|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578999999985 9999999999999999988775
No 300
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=2.6 Score=45.40 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.9
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++.=|+|+|.|.||++++-.|.+.|..=+-|.|-
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 578889999999999999999999999755666653
No 301
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.45 E-value=17 Score=38.75 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCce--EeCC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSK--YYDE 491 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~--~i~~ 491 (588)
..++++|.|.|..|.+.+..|.. .+.+.|.|.+. +.+++..+.+...+. + +.+ ..++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------~~~~a~~l~~~~~~~---------~-g~~v~~~~d 190 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------DAAKAEAYAADLRAE---------L-GIPVTVARD 190 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------CHHHHHHHHHHHhhc---------c-CceEEEeCC
Confidence 45799999999999998888875 56777888766 334443333221111 1 111 1111
Q ss_pred -CCccccccceeecCCCcC--ccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEecccc
Q 007820 492 -AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (588)
Q Consensus 492 -~eil~~dcDILIPcA~~n--~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~l 555 (588)
++.+ .++||++-|+... .+..+. ++.++.+.+=|++.|.-.|.+..+.++--.|+-|..
T Consensus 191 ~~~al-~~aDiVi~aT~s~~p~i~~~~----l~~g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~ 252 (330)
T PRK08291 191 VHEAV-AGADIIVTTTPSEEPILKAEW----LHPGLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRL 252 (330)
T ss_pred HHHHH-ccCCEEEEeeCCCCcEecHHH----cCCCceEEeeCCCCCCcccCCHHHHhhCCEEEeCCH
Confidence 1122 4789998876543 333332 245788888899988877776555555444444554
No 302
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.28 E-value=3.3 Score=43.02 Aligned_cols=121 Identities=11% Similarity=0.105 Sum_probs=67.7
Q ss_pred cEEEEeccchHHHHHHHHHHHCCC---eEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GA---KVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e 493 (588)
++|.|+|+||+|+.+++-|.+.|. .-|.++|. +.+++..+.+ . + +.+..++..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------~~~~~~~l~~---~----------~-g~~~~~~~~ 58 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------NVSNLKNASD---K----------Y-GITITTNNN 58 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------CHHHHHHHHH---h----------c-CcEEeCCcH
Confidence 479999999999999999998884 12455554 2333321111 1 1 222222221
Q ss_pred ccccccceeecCCCcCccchhhHHhhhh-cCC-eEEEecCCCCCCHHHHHHHHH--CCceEeccccccccCce
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVN-SGC-RILVEGSNMPCTPEAVDVLKK--ANVLIAPAMAAGAGGVV 562 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~-~~a-kiVvEgAN~P~T~eA~~iL~~--rGI~viPD~laNAGGVi 562 (588)
-+-.+|||+|-|-....+. +-...|.. .+- ++|+--+-+-....-.+.|.. +=+.++|-..+-.|-=+
T Consensus 59 e~~~~aDiIiLavkP~~~~-~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~ 130 (272)
T PRK12491 59 EVANSADILILSIKPDLYS-SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGM 130 (272)
T ss_pred HHHhhCCEEEEEeChHHHH-HHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCce
Confidence 1234889999887653332 22233311 122 477777766555555555632 23568888776655433
No 303
>PRK06523 short chain dehydrogenase; Provisional
Probab=83.16 E-value=2 Score=42.57 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.7
Q ss_pred CCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++|++|+|.| .|.+|+.+|+.|.+.|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 468899999999 58999999999999999976654
No 304
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.09 E-value=1.5 Score=42.97 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.2
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
++|+|.|.|-||.-+|-.|++.|.+|+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE
Confidence 58999999999999999999999997765
No 305
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.08 E-value=3.3 Score=43.96 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-.|.+|+|.|.|.||..++..+..+|++|+++.++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999999999999999999998776544
No 306
>PRK04148 hypothetical protein; Provisional
Probab=83.03 E-value=2.2 Score=40.35 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.++++|+++|.| -|..+|+.|.+.|..|++ .|.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi 47 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDI 47 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EEC
Confidence 467899999999 888899999999999654 465
No 307
>PRK06823 ornithine cyclodeaminase; Validated
Probab=82.99 E-value=9.2 Score=40.76 Aligned_cols=149 Identities=15% Similarity=0.046 Sum_probs=82.3
Q ss_pred ccCCccc-c-cCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeC
Q 007820 378 FTGPRIF-W-SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVD 454 (588)
Q Consensus 378 vTGKp~~-~-GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~Iyd 454 (588)
-||.|+. + -|.....--||=.-..+++.+.+ -.-++++|.|.|..|++-++.+... ..+-|-| ||
T Consensus 93 ~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~-----~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v-------~~ 160 (315)
T PRK06823 93 KTGEPQALLLDEGWLTALRTALAGRIVARLLAP-----QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWV-------WG 160 (315)
T ss_pred CCCceEEEEcCCChHHHHHHHHHHHHHHHHhcC-----CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEE-------EC
Confidence 4777876 3 45443323344333444444332 2457999999999999998887763 2333444 44
Q ss_pred CCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceeecCCCc--CccchhhHHhhhhcCCeEEEecCC
Q 007820 455 EDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSN 532 (588)
Q Consensus 455 pdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPcA~~--n~It~enA~~l~~~~akiVvEgAN 532 (588)
.+ .++...+.+..... . ......+..+-.-.+|||++-|+.. -.++.+. ++.++.|++=|++
T Consensus 161 r~---~~~a~~~~~~~~~~----~-----~~v~~~~~~~~av~~ADIV~taT~s~~P~~~~~~----l~~G~hi~~iGs~ 224 (315)
T PRK06823 161 RS---ETALEEYRQYAQAL----G-----FAVNTTLDAAEVAHAANLIVTTTPSREPLLQAED----IQPGTHITAVGAD 224 (315)
T ss_pred CC---HHHHHHHHHHHHhc----C-----CcEEEECCHHHHhcCCCEEEEecCCCCceeCHHH----cCCCcEEEecCCC
Confidence 33 33433233221110 0 1122222211122589999977553 3344433 3569999999999
Q ss_pred CCCCHHHHHHHHHCCceEeccc
Q 007820 533 MPCTPEAVDVLKKANVLIAPAM 554 (588)
Q Consensus 533 ~P~T~eA~~iL~~rGI~viPD~ 554 (588)
.|-..|.+..+.++.-.|+-|.
T Consensus 225 ~p~~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 225 SPGKQELDAELVARADKILVDS 246 (315)
T ss_pred CcccccCCHHHHhhCCEEEECC
Confidence 9988887755555543333354
No 308
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.97 E-value=1.7 Score=48.49 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.0
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
++++++|.|.|+|..|..+|++|.+.|++ |.++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGAR-LRVADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEEcCC
Confidence 46789999999999999999999999998 5678873
No 309
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.96 E-value=1.7 Score=47.80 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|++|.|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~-v~~~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAE-VIAWDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEECC
Confidence 6789999999999999999999999998 678886
No 310
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=82.91 E-value=1.3 Score=46.14 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+..+|+|.|.|-||+++++.|.+-|..=+.+.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 57789999999999999999999999765777765
No 311
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.73 E-value=2.5 Score=40.87 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=31.0
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++++|.| .|.+|+++++.|.+.|++|+.++.+
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 56789999998 4999999999999999998666654
No 312
>PRK06138 short chain dehydrogenase; Provisional
Probab=82.64 E-value=2.1 Score=41.88 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 478999999985 9999999999999999976654
No 313
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.63 E-value=1.4 Score=47.46 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCC-eEEEE
Q 007820 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSV 445 (588)
Q Consensus 389 ~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GA-KVVaV 445 (588)
++-.-.||||.+.= ... =-+|.+|+|-|.|.||..+++-....|| +||+|
T Consensus 173 LgCGvsTG~GAa~~------~Ak-v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 173 LGCGVSTGYGAAWN------TAK-VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred eeccccccchhhhh------hcc-cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 34456899997432 111 2378999999999999999998888886 66665
No 314
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.60 E-value=2.3 Score=41.31 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=29.6
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++|.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 468999999986 8899999999999999977653
No 315
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.56 E-value=3 Score=43.76 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=26.6
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|++|..+|..|.+.|..|. +.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 369999999999999999999998864 5554
No 316
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.53 E-value=2.2 Score=42.01 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
.++|++++|.|. |.+|+++++.|.+.|+.|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 467999999996 999999999999999997654
No 317
>PLN02827 Alcohol dehydrogenase-like
Probab=82.47 E-value=17 Score=38.96 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=29.8
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-..|.+|+|.|.|.||..+++++..+|+++|.++|.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 346899999999999999999999999964555553
No 318
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.46 E-value=7.7 Score=39.31 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCCC--eEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGA--IPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GA--KVVaVSDs 448 (588)
++|+|+|+|++|..++..|.+.|. ..|.+.|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 579999999999999999998882 22455554
No 319
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.42 E-value=2.4 Score=41.32 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++|++++|.|. |.+|+.+|+.|.+.|++|+.+ |+
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~-~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALI-DL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 478999999997 999999999999999996554 44
No 320
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.35 E-value=2.4 Score=41.42 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++++|.|. |.+|+++++.|.+.|++|+.+ ++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~-~r 37 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVT-DR 37 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 478899999995 999999999999999996554 44
No 321
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.33 E-value=2.3 Score=41.71 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=28.6
Q ss_pred CCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
+++++|+|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5788999998 6999999999999999997655
No 322
>PRK07774 short chain dehydrogenase; Provisional
Probab=82.32 E-value=2.3 Score=41.64 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
.+++++++|.|. |-+|.++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999996 999999999999999997655
No 323
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.29 E-value=9.2 Score=40.67 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=67.7
Q ss_pred CCcEEEEeccchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~-e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e 493 (588)
..++++|.|.|..|.+.++.|. ..+.+-|.|.+. +.++...+.+.... .+ +.+...-++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------~~~~a~~~a~~~~~---------~~-g~~v~~~~~ 187 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------DSAKAEALALQLSS---------LL-GIDVTAATD 187 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------CHHHHHHHHHHHHh---------hc-CceEEEeCC
Confidence 5679999999999999999886 467666777766 33333323221111 01 111111122
Q ss_pred cc--ccccceeecCCCcC--ccchhhHHhhhhcCCeEEEecCCCCCCHHHHH-HHHHCCceEeccc
Q 007820 494 PW--NERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVD-VLKKANVLIAPAM 554 (588)
Q Consensus 494 il--~~dcDILIPcA~~n--~It~enA~~l~~~~akiVvEgAN~P~T~eA~~-iL~~rGI~viPD~ 554 (588)
+- -.+|||++-|+... .++.+. ++.++.+..=|++.|.-.|.+. +|.... +|+-|.
T Consensus 188 ~~~av~~aDiVvtaT~s~~p~i~~~~----l~~g~~i~~vg~~~p~~rEld~~~l~~a~-~~vvD~ 248 (326)
T TIGR02992 188 PRAAMSGADIIVTTTPSETPILHAEW----LEPGQHVTAMGSDAEHKNEIDPAVIAKAD-HYVADR 248 (326)
T ss_pred HHHHhccCCEEEEecCCCCcEecHHH----cCCCcEEEeeCCCCCCceecCHHHHhccC-EEEcCC
Confidence 21 14899999887643 333332 3568889988999887666543 344333 344443
No 324
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=82.25 E-value=15 Score=38.77 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=77.6
Q ss_pred CcEEEEecc-chHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC-
Q 007820 416 GLRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA- 492 (588)
Q Consensus 416 GkrVaIQGf-GNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~- 492 (588)
..+|+|.|+ |.+|+.+++.+.+. +..+++..|+.+... .|-|..++. ..+.+ + ..+.++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~--~g~d~ge~~-------g~~~~--------g-v~v~~~~ 63 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS--LGSDAGELA-------GLGLL--------G-VPVTDDL 63 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc--cccchhhhc-------ccccc--------C-ceeecch
Confidence 368999998 99999999999875 489999999866433 233433320 00111 1 123332
Q ss_pred CccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHH----HHCCceEeccccc
Q 007820 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKANVLIAPAMAA 556 (588)
Q Consensus 493 eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~rGI~viPD~la 556 (588)
.....++||+|--+.. +.+.++++...+++.++|++= -.+|++-.+.| ++-+|++.|.+..
T Consensus 64 ~~~~~~~DV~IDFT~P-~~~~~~l~~~~~~~~~lVIGT--TGf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 64 LLVKADADVLIDFTTP-EATLENLEFALEHGKPLVIGT--TGFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred hhcccCCCEEEECCCc-hhhHHHHHHHHHcCCCeEEEC--CCCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 2346799999998765 567788888778888888853 23455544444 3447788887643
No 325
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.99 E-value=3.9 Score=38.67 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.7
Q ss_pred EEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+|+|.|.||.|..+|..|.+.|.. |.+.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEec
Confidence 589999999999999999999977 455544
No 326
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.88 E-value=2.5 Score=41.60 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.++++++++|.|. |.+|.++|+.|.+.|++|+.+.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999985 9999999999999999976553
No 327
>PRK12742 oxidoreductase; Provisional
Probab=81.81 E-value=2.6 Score=40.96 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.++|++|+|.| .|.+|+.+|+.|.+.|++|+.+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 47899999999 49999999999999999976543
No 328
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.77 E-value=2.6 Score=41.88 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++|++++|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVA 38 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 3578999999996 7899999999999999876553
No 329
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.76 E-value=2.4 Score=45.29 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=27.1
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|+|.|.+|...|..+...|..| .+-|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V-~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDV-VAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 58999999999999999999999995 45555
No 330
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=81.75 E-value=2.7 Score=44.97 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=57.8
Q ss_pred cEEEEecc-chHHHHHHHHHHHCC-CeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCC-C
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA-K 493 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e~G-AKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~-e 493 (588)
++|+|.|. |-+|+.+++.|.+.. ..+++++++... .|-+...+ ..+. ..+.+... +......+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~----~g~~~~~~---~~~~-~~~~~~~~---~~~~~~~~~~~~ 69 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRS----AGKRYGEA---VKWI-EPGDMPEY---VRDLPIVEPEPV 69 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhh----cCCcchhh---cccc-ccCCCccc---cceeEEEeCCHH
Confidence 47999994 999999999998866 688888776311 22222111 0000 00000000 0011111111 1
Q ss_pred ccccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
.+ .++|+++.|+..+ ++.+.+..+.+.++++|.=++
T Consensus 70 ~~-~~~DvVf~a~p~~-~s~~~~~~~~~~G~~VIDlsg 105 (341)
T TIGR00978 70 AS-KDVDIVFSALPSE-VAEEVEPKLAEAGKPVFSNAS 105 (341)
T ss_pred Hh-ccCCEEEEeCCHH-HHHHHHHHHHHCCCEEEECCh
Confidence 22 5799988887555 667777777777898887544
No 331
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=81.71 E-value=2.5 Score=44.40 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
+.+.+++||+|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578899999999 599999999999999999887754
No 332
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.70 E-value=2.5 Score=41.40 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 36789999998 699999999999999999876543
No 333
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=81.65 E-value=2.5 Score=42.22 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=31.8
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++||+++|.|. +.+|.++|+.|.+.|++|+.+..+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4689999999985 889999999999999998766544
No 334
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=81.54 E-value=17 Score=40.94 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcC-CCCccCCCCCCCChhHHHHHHHHHhhHhCCCCccccCCcccccCCCCCCCc--cHHHHHHHHHHHHH
Q 007820 332 QSFMNEIHRYLG-PDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEA--TGYGLVFFAQLILA 408 (588)
Q Consensus 332 r~f~~eL~r~IG-p~~DVpApDiGt~~reM~~i~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eA--TG~GV~~~i~~~l~ 408 (588)
.+.+..|.+-.| |...+|-| ++.+..+-...+-..+. |++ ++. --++-+ ..+++
T Consensus 250 s~aa~~Le~~~gvp~~~~P~P---iGi~~Td~fLr~Ia~~~--------G~~---------pe~l~~Er~rl---~dal~ 306 (457)
T CHL00073 250 SRTATTLMRRRKCKLIGAPFP---IGPDGTRAWIEKICSVF--------GIE---------PQGLEEREEQI---WESLK 306 (457)
T ss_pred HHHHHHHHHHhCCceeecCCc---CcHHHHHHHHHHHHHHh--------CcC---------HHHHHHHHHHH---HHHHH
Confidence 566666665556 66667777 44555554343433332 221 111 111111 12233
Q ss_pred HhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 409 DMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 409 ~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+...-|+||||++.|=..-..+++++|.++|.+||.++..
T Consensus 307 d~~~~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~ 346 (457)
T CHL00073 307 DYLDLVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIP 346 (457)
T ss_pred HHHHHHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeC
Confidence 3334579999999998789999999999999999999665
No 335
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.53 E-value=2.6 Score=41.94 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.| .|-+|..+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 46889999998 59999999999999999976554
No 336
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=81.39 E-value=1.8 Score=46.19 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=27.6
Q ss_pred CcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-++|+|.|.|.+|...|..+...|.. |.+.|.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~ 34 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDI 34 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeC
Confidence 46899999999999999999886677 567787
No 337
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.39 E-value=13 Score=38.00 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..-..|.+|+|.|.|.+|+.+++.+...|++|+++.++
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~ 200 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRS 200 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCC
Confidence 33446789999999999999999999999998877665
No 338
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=81.22 E-value=2.7 Score=41.17 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++|+++|.| .|.+|+.+|+.|.+.|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 4688999998 5999999999999999998776543
No 339
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=81.19 E-value=2.3 Score=44.60 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
++|++|+|.|. |-+|+++++.|.+.|++|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 47899999995 9999999999999999988765
No 340
>PLN02740 Alcohol dehydrogenase-like
Probab=81.08 E-value=17 Score=38.86 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCe-EEEE
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSV 445 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAK-VVaV 445 (588)
-.|.+|+|.|.|.||..++..+..+|++ |+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~ 229 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGV 229 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence 4689999999999999999999999995 6554
No 341
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.92 E-value=11 Score=42.01 Aligned_cols=119 Identities=19% Similarity=0.285 Sum_probs=66.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC---------CCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCce
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA---------KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSK 487 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs---------~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~ 487 (588)
.||+|.|+|-||.-+|-.+...|++|+++ |. +|..|=.+ .+.+++ +++.. +.|.| +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~--v~~~v-~~g~l----------r 74 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEV--VKEAV-ESGKL----------R 74 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHH--HHHHH-hcCCc----------e
Confidence 79999999999999999999999999977 22 12222111 111111 11111 11222 1
Q ss_pred EeCCCCccccccceeecCCCcCcc-----c-------hhhHHhhhhcCCeEEEecCCCC-CCHHHHHHH-HHCCceEe
Q 007820 488 YYDEAKPWNERCDVAFPCASQNEI-----D-------QSDAINLVNSGCRILVEGSNMP-CTPEAVDVL-KKANVLIA 551 (588)
Q Consensus 488 ~i~~~eil~~dcDILIPcA~~n~I-----t-------~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL-~~rGI~vi 551 (588)
.-++-+-+. +||++|=|-..-.- + .+......+.|.-+|.|..=-| +|.+-..-| +++.-+..
T Consensus 75 aTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 75 ATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred EecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcc
Confidence 112222233 89998766443211 1 1222223357999999999988 677765544 44343333
No 342
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=80.90 E-value=2.2 Score=45.79 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.3
Q ss_pred EEEEec-cchHHHHHHHHHHHCCCeE
Q 007820 418 RCVVSG-SGKIAMHVLEKLIAYGAIP 442 (588)
Q Consensus 418 rVaIQG-fGNVG~~aAe~L~e~GAKV 442 (588)
+|+|.| .|.||+.++++|.+.+..+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~ 26 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPI 26 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCCh
Confidence 588999 7999999999999877653
No 343
>PRK08703 short chain dehydrogenase; Provisional
Probab=80.85 E-value=2.9 Score=40.95 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 49999999999999999966553
No 344
>PLN02256 arogenate dehydrogenase
Probab=80.77 E-value=3 Score=44.14 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
..++++|+|.|+|++|+.+|+.|.+.|.+|+++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 4477899999999999999999999998876543
No 345
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.63 E-value=2.6 Score=46.15 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++.+++|.|.|.|..|..+|++|.+.|++| .++|.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v-~~~d~ 36 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEV-AAYDA 36 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 367899999999999999999999999995 56775
No 346
>PRK06057 short chain dehydrogenase; Provisional
Probab=80.62 E-value=2.7 Score=41.62 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.6
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
.++|++|+|.|. |.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 478999999997 999999999999999997655
No 347
>PRK08264 short chain dehydrogenase; Validated
Probab=80.56 E-value=2.8 Score=40.78 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCC-eEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGA-IPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GA-KVVaVS 446 (588)
++++++++|.| .|.+|+++|+.|.+.|+ +|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 46789999998 69999999999999999 765444
No 348
>PRK09186 flagellin modification protein A; Provisional
Probab=80.48 E-value=2.7 Score=41.29 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
++|++|+|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999995 899999999999999997666
No 349
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.33 E-value=3.2 Score=40.72 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
+++|++++|.|. |.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 478899999995 99999999999999999876643
No 350
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.18 E-value=2.6 Score=44.11 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=28.9
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++|.|.|.|++|..+|..|.+.|..| .+.|+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V-~~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRV-RVWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEE-EEEeC
Confidence 5689999999999999999999999986 45555
No 351
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.15 E-value=26 Score=37.19 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCe-EEEE
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSV 445 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAK-VVaV 445 (588)
-.|.+|+|.|.|.||..++..+..+|++ |+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~ 222 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAV 222 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence 3588999999999999999999999994 6544
No 352
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.05 E-value=2.8 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 688999999985 789999999999999998765
No 353
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.03 E-value=3 Score=40.53 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~ 36 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVD 36 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 58999999999999999976553
No 354
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.00 E-value=3 Score=41.12 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+ ++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 57899999998 5899999999999999997655 44
No 355
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=79.93 E-value=13 Score=40.37 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.2
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|.+|+|.|.|.+|..++..+..+|+++|.++|.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~ 218 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDL 218 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 46889999999999999999999999997777765
No 356
>PRK07411 hypothetical protein; Validated
Probab=79.92 E-value=2.1 Score=46.77 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.4
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.|+..+|+|.|.|-+|..+|+.|...|..-+.+.|.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 357789999999999999999999999877888885
No 357
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=79.91 E-value=4 Score=44.97 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecc-----------------chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCC
Q 007820 401 FFAQLILADMNKELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDG 457 (588)
Q Consensus 401 ~~i~~~l~~~g~~l~GkrVaIQGf-----------------GNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdG 457 (588)
..+...+. ..+++|++|+|.|- |.+|..+|+.|.+.|++|+.++ ....+-.|.|
T Consensus 175 ~~~~~~~~--~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~-~~~~~~~~~~ 245 (399)
T PRK05579 175 AAAERALS--PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS-GPVNLPTPAG 245 (399)
T ss_pred HHHHHHhh--hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC-CCccccCCCC
Confidence 34444443 25789999999985 8899999999999999976554 3333333444
No 358
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.88 E-value=3.2 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
++++++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 47789999998 5999999999999999997766
No 359
>PRK10637 cysG siroheme synthase; Provisional
Probab=79.87 E-value=2.3 Score=47.37 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+|+|++|+|.|.|+||..=++.|.+.|++|.-||
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 37899999999999999999999999999976665
No 360
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.83 E-value=2.6 Score=46.89 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+.+++|.|.|+|..|..+|++|.+.|++ |.++|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 46 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCD-VVVADD 46 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence 46788999999999999999999999996 678886
No 361
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.78 E-value=3 Score=41.11 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++++++|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 378899999985 9999999999999999965443
No 362
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.71 E-value=2.7 Score=43.75 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
++++++|.|.|. |-+|+++++.|.+.|++|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 678999999995 99999999999999999887653
No 363
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.71 E-value=9 Score=41.81 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
..++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999996 999999999999999998765
No 364
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.71 E-value=2.6 Score=43.09 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=26.3
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|++|..+|..|.+.|..|+ +.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~-~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVT-LVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 479999999999999999999998854 4444
No 365
>PRK08655 prephenate dehydrogenase; Provisional
Probab=79.53 E-value=7.1 Score=43.36 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.0
Q ss_pred cEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.| +|.+|..+|+.|.+.|..| .+.|.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V-~v~~r 32 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEV-IVTGR 32 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEE-EEEEC
Confidence 4799997 8999999999999999885 44454
No 366
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=79.51 E-value=3.3 Score=43.95 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=28.6
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCCe-EEEEEcC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GAK-VVaVSDs 448 (588)
.+++|+|.|.|+||+.+|..|...|.. -+.+.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 568999999999999999999888752 3677776
No 367
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.51 E-value=3.3 Score=41.72 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++||+++|.|. |.+|..+|+.|.+.|++|+. .+.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~-~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVIL-LSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEE-EeC
Confidence 4689999999986 78999999999999999654 454
No 368
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.47 E-value=3.4 Score=41.41 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999995 8999999999999999976654
No 369
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.47 E-value=3.1 Score=41.20 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++|++++|.|. |.+|.++|+.|.+.|++|+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578999999996 899999999999999997554
No 370
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.44 E-value=2.7 Score=46.97 Aligned_cols=34 Identities=38% Similarity=0.615 Sum_probs=30.5
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+.|++|+|.|+|..|..++++|...|++| .++|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v-~~~D~ 43 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARP-TVCDD 43 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEE-EEEcC
Confidence 47899999999999999999999999985 56885
No 371
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.42 E-value=3.1 Score=48.97 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|..+|..+...|.. |.+.|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999998 456676
No 372
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=79.31 E-value=26 Score=37.86 Aligned_cols=151 Identities=16% Similarity=0.083 Sum_probs=81.9
Q ss_pred cCCcccccCCCCCCCccHHHHHHHHHHHHHHhCCCCCCcEEEEeccchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCC
Q 007820 379 TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDG 457 (588)
Q Consensus 379 TGKp~~~GGs~~r~eATG~GV~~~i~~~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e-~GAKVVaVSDs~G~IydpdG 457 (588)
||.|+.+ ..-..-|++=...+---+.+++... .-.+++|+|.|..+.+-++.+.+ .+.+=|-|.+.
T Consensus 97 TG~plal---~d~~~lTa~RTaAasavAa~~LA~~-da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r--------- 163 (330)
T COG2423 97 TGEPLAL---LDATRLTALRTAAASAVAAKYLARK-DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSR--------- 163 (330)
T ss_pred CCCEEEE---ecCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcC---------
Confidence 6666542 2223344443333333333444321 34589999999999999998876 34443555544
Q ss_pred CCHHHHHHHHHHhhccCChhhhhhccCC-ceEeCCCCccccccceeecCCCcCc--cchhhHHhhhhcCCeEEEecCCCC
Q 007820 458 FDYMKISFLRDIKSQQRSLRDYSKTYAR-SKYYDEAKPWNERCDVAFPCASQNE--IDQSDAINLVNSGCRILVEGSNMP 534 (588)
Q Consensus 458 LDie~L~~L~~~k~~~gsL~~y~~~~p~-a~~i~~~eil~~dcDILIPcA~~n~--It~enA~~l~~~~akiVvEgAN~P 534 (588)
+.+..+.+...- .+.++. +..+++.+-.-..|||++-|+.... +..+- ++.++.|.+=|+|-|
T Consensus 164 -~~~~~e~~a~~l---------~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~Pil~~~~----l~~G~hI~aiGad~p 229 (330)
T COG2423 164 -DPEAAEAFAARL---------RKRGGEAVGAADSAEEAVEGADIVVTATPSTEPVLKAEW----LKPGTHINAIGADAP 229 (330)
T ss_pred -CHHHHHHHHHHH---------HhhcCccceeccCHHHHhhcCCEEEEecCCCCCeecHhh----cCCCcEEEecCCCCc
Confidence 223322222111 111211 2223332222347999999987644 43333 356999999999999
Q ss_pred CCHHHHHHHHHCCceEeccccc
Q 007820 535 CTPEAVDVLKKANVLIAPAMAA 556 (588)
Q Consensus 535 ~T~eA~~iL~~rGI~viPD~la 556 (588)
--.|.+..+.+|-=.|+.|...
T Consensus 230 ~k~Eld~e~l~ra~~vvvD~~~ 251 (330)
T COG2423 230 GKRELDPEVLARADRVVVDSLE 251 (330)
T ss_pred ccccCCHHHHHhcCeEEEcCHH
Confidence 7777664444444244445443
No 373
>PRK07589 ornithine cyclodeaminase; Validated
Probab=79.22 E-value=25 Score=38.15 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCcEEEEeccchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~-GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e 493 (588)
.-++++|.|.|..|.+-++.+... ..+=|-|.+. +.++...+.+.-... .+ .....++-+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------~~~~a~~~~~~~~~~----~~-----~v~~~~~~~ 188 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------DPAATAKLARNLAGP----GL-----RIVACRSVA 188 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------CHHHHHHHHHHHHhc----CC-----cEEEeCCHH
Confidence 346899999999999888877653 3333444433 233332222211110 00 122222211
Q ss_pred ccccccceeecCCCcCc----cchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHCCceEecccc
Q 007820 494 PWNERCDVAFPCASQNE----IDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (588)
Q Consensus 494 il~~dcDILIPcA~~n~----It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI~viPD~l 555 (588)
-.-.++||++-|+.... +..+. ++.++.|++=|++.|.-.|.+..+.++.-+|+ |..
T Consensus 189 ~av~~ADIIvtaT~S~~~~Pvl~~~~----lkpG~hV~aIGs~~p~~~Eld~~~l~~a~v~v-D~~ 249 (346)
T PRK07589 189 EAVEGADIITTVTADKTNATILTDDM----VEPGMHINAVGGDCPGKTELHPDILRRARVFV-EYE 249 (346)
T ss_pred HHHhcCCEEEEecCCCCCCceecHHH----cCCCcEEEecCCCCCCcccCCHHHHhcCEEEE-CCH
Confidence 11248999997775322 44433 35699999999999988888755555544455 653
No 374
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.06 E-value=3.5 Score=41.15 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=28.9
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
++++++++|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 468999999985 889999999999999997654
No 375
>PRK07576 short chain dehydrogenase; Provisional
Probab=79.04 E-value=3.4 Score=41.52 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.|. |.+|..+++.|.+.|++|+.+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999986 8999999999999999976653
No 376
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.02 E-value=5.6 Score=41.62 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=29.2
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|.+|+|.|.|.||+.++.++...|++.|.++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 46899999999999999999999999954444544
No 377
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.01 E-value=3 Score=42.79 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
+++|++|+|.|. |.+|.++|+.|.+.|++|+.++.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 678999999985 99999999999999999876653
No 378
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=79.01 E-value=3.1 Score=40.94 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
-+++++|+|.| .|.+|.++++.|.+.|++|+.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLG 43 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEe
Confidence 46899999997 58999999999999999976543
No 379
>PLN02206 UDP-glucuronate decarboxylase
Probab=78.99 E-value=2.9 Score=46.36 Aligned_cols=37 Identities=35% Similarity=0.639 Sum_probs=31.8
Q ss_pred hCCCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 410 MNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 410 ~g~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+|..-+++||+|.| .|-||+++++.|.+.|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 34456789999999 59999999999999999988764
No 380
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.96 E-value=3.8 Score=39.91 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++++|.| .|.+|+++|+.|.+.|++|+.+..+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 56889999998 5999999999999999998765443
No 381
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.90 E-value=3.5 Score=40.73 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=30.1
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++|++++|.|. |.+|+.+|+.|.+.|++|+.+.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999984 8999999999999999976553
No 382
>PRK06398 aldose dehydrogenase; Validated
Probab=78.88 E-value=3.4 Score=41.33 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 57899999999 57899999999999999987654
No 383
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.85 E-value=3.3 Score=48.79 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|..+|..+...|.. |.+.|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeC
Confidence 4799999999999999999999998 456776
No 384
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.83 E-value=2.8 Score=46.25 Aligned_cols=34 Identities=35% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCCcEEEEeccchHHHH-HHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMH-VLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~-aAe~L~e~GAKVVaVSDs 448 (588)
.++++|.|.|.|..|.. +|++|.+.|++ |.++|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence 56789999999999999 69999999999 578887
No 385
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.83 E-value=12 Score=38.25 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceeec
Q 007820 425 GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFP 504 (588)
Q Consensus 425 GNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIP 504 (588)
-..+..+++.|.+.|.+++=|+=. .|+.++. +..++. .|.++|| |++|=
T Consensus 26 ~~~a~~~~~al~~gGi~~iEiT~~-----tp~a~~~-----i~~l~~------~~~~~~p---------------~~~vG 74 (222)
T PRK07114 26 VEVAKKVIKACYDGGARVFEFTNR-----GDFAHEV-----FAELVK------YAAKELP---------------GMILG 74 (222)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCC-----CCcHHHH-----HHHHHH------HHHhhCC---------------CeEEe
Confidence 445667788888889888888755 4554431 111110 1111122 55554
Q ss_pred CCCcCccchhhHHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceEeccccc
Q 007820 505 CASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAA 556 (588)
Q Consensus 505 cA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~viPD~la 556 (588)
+ +.++|.+.++..++.||++|+ .| ++++-.+..+++||.++|+.+.
T Consensus 75 a--GTVl~~e~a~~a~~aGA~FiV----sP~~~~~v~~~~~~~~i~~iPG~~T 121 (222)
T PRK07114 75 V--GSIVDAATAALYIQLGANFIV----TPLFNPDIAKVCNRRKVPYSPGCGS 121 (222)
T ss_pred e--EeCcCHHHHHHHHHcCCCEEE----CCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 4 478899999999999999999 45 6788889999999999998753
No 386
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.81 E-value=3.2 Score=41.16 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=29.1
Q ss_pred CCCCcEEEEecc---chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf---GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++|++|+|.|. |.+|.++|+.|.+.|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 578999999997 479999999999999997655
No 387
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.69 E-value=15 Score=40.84 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=68.3
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhh--ccCChhhhhhccCC---ceEeCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS--QQRSLRDYSKTYAR---SKYYDE 491 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~--~~gsL~~y~~~~p~---a~~i~~ 491 (588)
++|+|.|.|=||...+-.|.+.|..||+| |. |..++..|..-+. ....|.++.++... ..+-++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Di----------d~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DI----------DESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEE-eC----------CHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcC
Confidence 58999999999999999999999997654 53 3333321111000 00012222221111 111111
Q ss_pred CCccccccceeecCCCcC-----ccch----hhHHhhhh--cCCeEEEecCCCC--CCHHHHHHHHHCC------ceEec
Q 007820 492 AKPWNERCDVAFPCASQN-----EIDQ----SDAINLVN--SGCRILVEGSNMP--CTPEAVDVLKKAN------VLIAP 552 (588)
Q Consensus 492 ~eil~~dcDILIPcA~~n-----~It~----enA~~l~~--~~akiVvEgAN~P--~T~eA~~iL~~rG------I~viP 552 (588)
.+.--.++||.+-|-.+. ..+- .-|+.|.+ .+.++|+-=+--| +|.+-.+.+.+.. |..-|
T Consensus 70 ~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NP 149 (414)
T COG1004 70 YEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNP 149 (414)
T ss_pred HHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecCh
Confidence 111123778777665442 2221 12222222 3546777777666 5667777776665 77777
Q ss_pred cccc
Q 007820 553 AMAA 556 (588)
Q Consensus 553 D~la 556 (588)
.|+-
T Consensus 150 EFLR 153 (414)
T COG1004 150 EFLR 153 (414)
T ss_pred HHhc
Confidence 7664
No 388
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=78.65 E-value=2.8 Score=44.99 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=55.6
Q ss_pred cEEEEec-cchHHHHHHHHHHHCC-CeEEEE-EcCCCeeeCCCCCCHHHHHHHHHHhh---ccCChhhhhhccCCceEeC
Q 007820 417 LRCVVSG-SGKIAMHVLEKLIAYG-AIPVSV-SDAKGYLVDEDGFDYMKISFLRDIKS---QQRSLRDYSKTYARSKYYD 490 (588)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~G-AKVVaV-SDs~G~IydpdGLDie~L~~L~~~k~---~~gsL~~y~~~~p~a~~i~ 490 (588)
.+|+|.| .|.+|+.++++|.+.. .+++++ .+. ...|-+...+ ..+.. ..+.+.+. ..+..+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~-----~~~G~~~~~~---~~~~~~~~~~~~~~~~-----~v~~~~ 70 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASE-----RSAGKTYGEA---VRWQLDGPIPEEVADM-----EVVSTD 70 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh-----hhcCCccccc---ccccccccccccccce-----EEEeCC
Confidence 6899998 8999999999998765 488887 332 1122111110 00000 00000000 111112
Q ss_pred CCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecC
Q 007820 491 EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (588)
Q Consensus 491 ~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (588)
.+ .+ .++|+++.|...+ +..+.++.+.+.++++|-=++
T Consensus 71 ~~-~~-~~~DvVf~a~p~~-~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 71 PE-AV-DDVDIVFSALPSD-VAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred HH-Hh-cCCCEEEEeCChh-HHHHHHHHHHHCCCEEEECCc
Confidence 12 23 4899998876554 567777777677898887665
No 389
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.61 E-value=3.4 Score=40.67 Aligned_cols=34 Identities=29% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++++|+|.|. |.+|+++|+.|.+.|++|+.+ ++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~-~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA-AR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE-eC
Confidence 67899999985 899999999999999997544 54
No 390
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.52 E-value=3.6 Score=40.51 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++|+|.| .|.+|.++++.|.+.|++|+.+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 69999999999999999987664
No 391
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=78.35 E-value=13 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
-.|.+|+|.|.|.+|..++..+..+|++|+++.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~ 196 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMT 196 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Confidence 358999999999999999999999999976653
No 392
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=78.33 E-value=3.1 Score=43.79 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
-+++++|+|.|. |-+|+++++.|.+.|.+|+++.-
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999995 99999999999999999887754
No 393
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=78.24 E-value=4 Score=40.57 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.+++|++++|.| .|.+|.++|+.|.+.|++||.++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 358999999998 588999999999999999876544
No 394
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=78.18 E-value=14 Score=39.97 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=62.0
Q ss_pred CcEEEEecc-chHHHHHHHHHHHCCC----eEEEEEc-CCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe
Q 007820 416 GLRCVVSGS-GKIAMHVLEKLIAYGA----IPVSVSD-AKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (588)
Q Consensus 416 GkrVaIQGf-GNVG~~aAe~L~e~GA----KVVaVSD-s~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i 489 (588)
+++|+|.|. |.||+-+.+.|.+... ..+..|. |-|--|-.- ......+. +.+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f-------------~~~~~~v~---------~~~ 58 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEF-------------GGKSIGVP---------EDA 58 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccc-------------cCccccCc---------ccc
Confidence 368999985 9999999999998542 2222333 222221000 00000000 001
Q ss_pred CCCCccccccceeecCCCcCccchhhHHhhhhcCCeEEEecCCC------C-----CCHHHHHHHHHCC-ceEecc
Q 007820 490 DEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM------P-----CTPEAVDVLKKAN-VLIAPA 553 (588)
Q Consensus 490 ~~~eil~~dcDILIPcA~~n~It~enA~~l~~~~akiVvEgAN~------P-----~T~eA~~iL~~rG-I~viPD 553 (588)
.+...|+ ++||++=|+.. ..+.+-++++.+.||-+|=-..+. | +.+++..-.++|| |+..|+
T Consensus 59 ~~~~~~~-~~Divf~~ag~-~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 59 ADEFVFS-DVDIVFFAAGG-SVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred ccccccc-cCCEEEEeCch-HHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 1112233 78888877743 345777777777777666655552 1 4455555555677 666665
No 395
>PRK12746 short chain dehydrogenase; Provisional
Probab=77.91 E-value=4.1 Score=40.06 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
++++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 47789999999 6999999999999999997554
No 396
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=77.87 E-value=3.6 Score=41.08 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=30.9
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
..++++|+|.| .|.+|+.+++.|.+.|++|++++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 46789999999 599999999999999999887764
No 397
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.81 E-value=4 Score=39.97 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|++++|.|. |.+|+++|+.|.+.|++|+.+.++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999985 899999999999999998765443
No 398
>PRK06196 oxidoreductase; Provisional
Probab=77.76 E-value=3.7 Score=42.49 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 411 g~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
..+++|++|+|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34688999999996 8899999999999999977654
No 399
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.74 E-value=3.8 Score=44.30 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=37.3
Q ss_pred HHHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 406 ~l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.|++.|.. .|++|.|.|.|-+|.-+.++...+|.+|++||.+
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCC
Confidence 35666777 9999999999999999999999999999999877
No 400
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=77.70 E-value=3.3 Score=42.38 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+|++|+|.| .|-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 478999999 69999999999999999987665
No 401
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.66 E-value=3.9 Score=40.53 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.| .|.+|.++|+.|.+.|++|+.+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 59999999999999999975543
No 402
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=77.65 E-value=3.8 Score=40.55 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++++++|.|. |.+|+++|+.|.+.|++|+.+ |.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~-~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLV-DR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 578999999985 889999999999999997644 44
No 403
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=77.62 E-value=3.9 Score=40.72 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.| .|.+|..+|+.|.+.|++|+.+.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~ 40 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNAD 40 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 58999999999999999976543
No 404
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=77.58 E-value=3.4 Score=48.89 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=27.5
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|+|.|.|-+|..+|..+...|..| .+.|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V-~l~d~ 366 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKT-VLKDA 366 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcE-EEecC
Confidence 58999999999999999999999985 56776
No 405
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.37 E-value=3.6 Score=41.12 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCCCcEEEEeccc---hHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGfG---NVG~~aAe~L~e~GAKVVaV 445 (588)
.++||+++|.|.+ .+|..+|+.|.+.|++|+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 3789999999975 79999999999999997654
No 406
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.36 E-value=4 Score=40.80 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.|. |-+|.++++.|.+.|++|+.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 478999999985 6799999999999999976553
No 407
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=77.35 E-value=2.8 Score=43.29 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCCC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYGA 440 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GA 440 (588)
+..+|+|.|.|-+|.++++.|.+.|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHH 35 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccc
Confidence 56799999999999999999999863
No 408
>PRK07062 short chain dehydrogenase; Provisional
Probab=77.34 E-value=4 Score=40.61 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++|++++|.|. |.+|.++|+.|.+.|++|+.+ +.
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~-~r 40 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC-GR 40 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-eC
Confidence 4688999999986 789999999999999997644 44
No 409
>PRK09135 pteridine reductase; Provisional
Probab=77.33 E-value=4.2 Score=39.52 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.++++|+|.| .|.+|+++++.|.+.|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4678999998 599999999999999999877753
No 410
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=77.31 E-value=2.2 Score=44.82 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=27.1
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCe-EEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAK-VVaVSDs 448 (588)
++|+|.|.|+||+.+|..|...|.. =|.+.|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4799999999999999999999852 3667776
No 411
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=77.28 E-value=4.2 Score=39.25 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++|+|.| .|.+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 46778999998 59999999999999999965444
No 412
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=77.22 E-value=1.3 Score=49.67 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.3
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVV 443 (588)
.|+||+|+|.|+|..|..-|.-|...|..|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 5899999999999999988888888888754
No 413
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.20 E-value=4.1 Score=40.42 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++|++|+|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 588999999985 899999999999999997654
No 414
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=77.17 E-value=3.7 Score=44.26 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.1
Q ss_pred CCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.+++|.|.| .|-+|+++++.|.+.|++|.|..-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR 38 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR 38 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc
Confidence 678999998 599999999999999999876554
No 415
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=77.15 E-value=7.1 Score=41.31 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 407 l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+...+....|.+|+|.|.|.||..+++.+..+|++|++++++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344444457899999999999999999999999998777654
No 416
>PRK08226 short chain dehydrogenase; Provisional
Probab=77.06 E-value=4.1 Score=40.41 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++++++|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 46789999998 68999999999999999976553
No 417
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=76.99 E-value=5.3 Score=42.66 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=51.7
Q ss_pred CcEEEEec-cchHHHHHHHHHHHCCC---eEEEEEcC--CCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe
Q 007820 416 GLRCVVSG-SGKIAMHVLEKLIAYGA---IPVSVSDA--KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (588)
Q Consensus 416 GkrVaIQG-fGNVG~~aAe~L~e~GA---KVVaVSDs--~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i 489 (588)
+++|+|.| .|.||+.++++|.+.|. ++++++.. .|--+.-.|. .....
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~--------------------------~i~v~ 54 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK--------------------------ELKVE 54 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc--------------------------eeEEe
Confidence 46899999 59999999999999765 34555432 2221110010 01111
Q ss_pred CCC-CccccccceeecCCCcCccchhhHHhhhhcCCeEE
Q 007820 490 DEA-KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRIL 527 (588)
Q Consensus 490 ~~~-eil~~dcDILIPcA~~n~It~enA~~l~~~~akiV 527 (588)
+.+ ..| .++|++|-|+ ....+.+-+.++.+.+|++|
T Consensus 55 d~~~~~~-~~vDvVf~A~-g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 55 DLTTFDF-SGVDIALFSA-GGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred eCCHHHH-cCCCEEEECC-ChHHHHHHHHHHHhCCCEEE
Confidence 111 124 3789988775 55577888888878888665
No 418
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.97 E-value=4 Score=48.01 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.6
Q ss_pred cEEEEeccchHHHHHHHHHH-HCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~-e~GAKVVaVSDs 448 (588)
++|+|.|.|.+|...|..+. ..|.. |.+.|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~ 341 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDI 341 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeC
Confidence 58999999999999999888 77888 556776
No 419
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.97 E-value=4.2 Score=39.45 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
+++++|+|.| .|.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 5688999998 5999999999999999997655
No 420
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=76.91 E-value=4.6 Score=41.62 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|++|.|.| .|-+|+++++.|.+.|++|+++.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4688999999 6999999999999999998877653
No 421
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.80 E-value=3.3 Score=39.41 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=27.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++|+|+|.|+-|.-+|..|.+.|.+| .+.
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V-~~~ 196 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSV-TLV 196 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEE-EEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEE-EEE
Confidence 688999999999999999999999999764 444
No 422
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.77 E-value=4.6 Score=40.00 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.3
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.++||+++|.| .|-+|..+|+.|.+.|++|+.+..
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999998 599999999999999999876543
No 423
>PRK06500 short chain dehydrogenase; Provisional
Probab=76.66 E-value=4.1 Score=39.77 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=29.0
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++|++|+|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 467899999995 999999999999999997654
No 424
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.62 E-value=4.9 Score=39.33 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++|+|.| .|-+|+++++.|.+.|++|+.+.++
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999998 5889999999999999997665543
No 425
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.57 E-value=4.3 Score=40.23 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
.+++|+++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALA 37 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 47899999998 4899999999999999997654
No 426
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.56 E-value=4.4 Score=40.03 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 48999999999999999976553
No 427
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.52 E-value=4.2 Score=39.76 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
|++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 5789999998 5999999999999999997654
No 428
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.52 E-value=4.3 Score=41.30 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++||+++|.| .|.+|+++|+.|.+.|++|+ ++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999998 68999999999999999965 4554
No 429
>PRK06194 hypothetical protein; Provisional
Probab=76.43 E-value=4.3 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++++|.| .|.+|+++|+.|.+.|++|+.+ |.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~-~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLA-DV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE-eC
Confidence 46789999998 5899999999999999997544 44
No 430
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.43 E-value=4.6 Score=41.61 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=30.2
Q ss_pred CCCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 411 g~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
+.++++++++|.|. |.+|.++|+.|.+.|++|+.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~ 70 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV 70 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 34678899999985 999999999999999997654
No 431
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.38 E-value=4.1 Score=40.67 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCCCcEEEEeccc---hHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGfG---NVG~~aAe~L~e~GAKVVaV 445 (588)
.++|++++|.|.. .+|.++|+.|.+.|++||.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 5889999999974 79999999999999997654
No 432
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.36 E-value=3.7 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCCCcEEEEeccc---hHHHHHHHHHHHCCCeEEEEEc
Q 007820 412 KELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 412 ~~l~GkrVaIQGfG---NVG~~aAe~L~e~GAKVVaVSD 447 (588)
.+++||+++|.|.| -+|+++|+.|.+.|++||. .|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv-~~ 41 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILV-GT 41 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEE-Ee
Confidence 57899999999997 7999999999999999754 54
No 433
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=76.31 E-value=3.8 Score=43.89 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=29.1
Q ss_pred CCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++||+|.|. |.||+++++.|.+.|..|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 6689999996 9999999999999999988775
No 434
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.29 E-value=4.1 Score=40.99 Aligned_cols=33 Identities=33% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCCCcEEEEecc---chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf---GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++||+++|.|. +.+|..+|+.|.+.|++|+.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 578999999997 589999999999999997644
No 435
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.28 E-value=7.4 Score=40.75 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=32.7
Q ss_pred HHHhCCCCCCcEEEEeccchHHHHHHHHHHHCCC-eEEEEEc
Q 007820 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSD 447 (588)
Q Consensus 407 l~~~g~~l~GkrVaIQGfGNVG~~aAe~L~e~GA-KVVaVSD 447 (588)
+...+..-.|.+|+|.|.|.||+.+++.+...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3444433478999999999999999999999999 7766643
No 436
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.19 E-value=4.1 Score=35.66 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=58.6
Q ss_pred EEEeccchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEe--CCC--Cc
Q 007820 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEA--KP 494 (588)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i--~~~--ei 494 (588)
|+|.|+|.+|+.+++.|.+.+.+|+ +.|. |.+... ..... + ...+ +.. +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~----------d~~~~~---~~~~~-~-----------~~~i~gd~~~~~~ 54 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDR----------DPERVE---ELREE-G-----------VEVIYGDATDPEV 54 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEES----------SHHHHH---HHHHT-T-----------SEEEES-TTSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEEC----------CcHHHH---HHHhc-c-----------cccccccchhhhH
Confidence 6899999999999999999665755 4444 222321 11111 1 1111 111 12
Q ss_pred cc----cccceeecCCCcCccchhhHHhhh--hcCCeEEEecCCCCCCHHHHHHHHHCCceE
Q 007820 495 WN----ERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVLI 550 (588)
Q Consensus 495 l~----~dcDILIPcA~~n~It~enA~~l~--~~~akiVvEgAN~P~T~eA~~iL~~rGI~v 550 (588)
|. .++|.++=++.....|...+..+- ....++|+..- +++..+.|++.|+-.
T Consensus 55 l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 55 LERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp HHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred HhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 21 478888877766555544433332 24578888764 456678888888743
No 437
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=76.17 E-value=4.2 Score=38.10 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=27.1
Q ss_pred EEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 419 CVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 419 VaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+|.|. |+||+.+++.|.+.|++|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 678885 999999999999999999998865
No 438
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.16 E-value=4.1 Score=40.59 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
+++||+++|.| .+.+|+.+|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57899999998 5899999999999999998765
No 439
>PRK05872 short chain dehydrogenase; Provisional
Probab=76.14 E-value=4.5 Score=41.55 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
.+++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 3688999999984 899999999999999996544
No 440
>PLN02775 Probable dihydrodipicolinate reductase
Probab=76.11 E-value=16 Score=38.73 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred cEEEEecc-chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHH-HHHHHHHHhhccCChhhhhhccCCceEe--CC-
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM-KISFLRDIKSQQRSLRDYSKTYARSKYY--DE- 491 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie-~L~~L~~~k~~~gsL~~y~~~~p~a~~i--~~- 491 (588)
.+|+|.|+ |++|+.+++.+.+.+..+|+..|+. ++|-|.. ++ . +. +.... ++
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~-----~~~~~~~~~~---~----------g~-----~v~~~~~~dl 68 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTG-----PAGVGVTVEV---C----------GV-----EVRLVGPSER 68 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccc-----ccccccccee---c----------cc-----eeeeecCccH
Confidence 58999996 9999999999988999999999873 3343322 11 0 00 01111 00
Q ss_pred CCcc-cc---ccc-eeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHHC---CceEecccc
Q 007820 492 AKPW-NE---RCD-VAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKA---NVLIAPAMA 555 (588)
Q Consensus 492 ~eil-~~---dcD-ILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~r---GI~viPD~l 555 (588)
++.+ +. .+| |+|--+.... ..+++...+++++.+|++=.- .+++-.+.+.+. ++++.|.+.
T Consensus 69 ~~~l~~~~~~~~~~VvIDFT~P~a-~~~~~~~~~~~g~~~VvGTTG--~~~e~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 69 EAVLSSVKAEYPNLIVVDYTLPDA-VNDNAELYCKNGLPFVMGTTG--GDRDRLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred HHHHHHhhccCCCEEEEECCChHH-HHHHHHHHHHCCCCEEEECCC--CCHHHHHHHHhcCCccEEEECccc
Confidence 1122 22 567 7877665443 356777777889999986442 455544444444 677777663
No 441
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=75.89 E-value=6.7 Score=42.34 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCcEEEEec-cchHHHHHHHHHHHCCC
Q 007820 415 KGLRCVVSG-SGKIAMHVLEKLIAYGA 440 (588)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aAe~L~e~GA 440 (588)
...+|+|.| .|.||+.+.++|.+.+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 457899999 59999999999998765
No 442
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=75.83 E-value=7.2 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-.|.+|+|.|.|.||..+++.+..+|++|+++.++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36899999999999999999999999998777544
No 443
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.73 E-value=4.1 Score=41.47 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.8
Q ss_pred CCCCcEEEEeccc---hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGfG---NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.++||+++|.|.+ .+|..+|+.|.+.|++|+. .+.
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~-~~r 41 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAF-TYQ 41 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEE-ecC
Confidence 4789999999987 6999999999999999754 443
No 444
>PRK12359 flavodoxin FldB; Provisional
Probab=75.63 E-value=6.6 Score=38.43 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=35.9
Q ss_pred CCCCCcEEEEeccchH-HH---------HHHHHHHHCCCeEEEEEcCCCeeeCCC
Q 007820 412 KELKGLRCVVSGSGKI-AM---------HVLEKLIAYGAIPVSVSDAKGYLVDED 456 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNV-G~---------~aAe~L~e~GAKVVaVSDs~G~Iydpd 456 (588)
.+|+||+|++-|+|+- |+ .+.+.|.+.|+++|+-...+|+-|+..
T Consensus 75 ~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s 129 (172)
T PRK12359 75 LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSS 129 (172)
T ss_pred CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccc
Confidence 4799999999999995 32 356677779999999998888877643
No 445
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.58 E-value=5.3 Score=38.52 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++.++|+|.| .|.+|+.+++.|.+.|+.|+.++.+
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 35678999998 5999999999999999997665554
No 446
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=75.58 E-value=14 Score=38.94 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=69.2
Q ss_pred EEEEecc-chHHHHHHHHHHHCCCeEEEE-EcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCcc
Q 007820 418 RCVVSGS-GKIAMHVLEKLIAYGAIPVSV-SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (588)
Q Consensus 418 rVaIQGf-GNVG~~aAe~L~e~GAKVVaV-SDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil 495 (588)
+|+|-|+ |++|+.+++.+.+.+..+|+. .|. ...|-|...+ ... .+.-. .|+..+-+-++++
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~-----~~~~~~~~~~---~g~-----~v~v~---~~~~~~~~l~~~~ 65 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGG-----EEEAENEAEV---AGK-----EILLH---GPSEREARIGEVF 65 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccc-----cccccchhhh---ccc-----ceeee---ccccccccHHHHH
Confidence 7899996 999999999998889999886 444 2233343322 100 00000 0111111112234
Q ss_pred ccccc-eeecCCCcCccchhhHHhhhhcCCeEEEecCCCCCCHHHHHHHHH---CCceEecccc
Q 007820 496 NERCD-VAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK---ANVLIAPAMA 555 (588)
Q Consensus 496 ~~dcD-ILIPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~---rGI~viPD~l 555 (588)
+..+| |+|.-+....+ .+|+...+++++.+|++=. ..|++..+.|.+ -++++.|-+.
T Consensus 66 ~~~~d~VvIDFT~P~~~-~~n~~~~~~~gv~~ViGTT--G~~~~~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 66 AKYPELICIDYTHPSAV-NDNAAFYGKHGIPFVMGTT--GGDREALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred hhcCCEEEEECCChHHH-HHHHHHHHHCCCCEEEcCC--CCCHHHHHHHHHhcCCCEEEECccc
Confidence 44588 88887765544 4567777788999888543 345554444433 4677787764
No 447
>PRK12827 short chain dehydrogenase; Provisional
Probab=75.57 E-value=4.7 Score=39.18 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.| .|-+|+++|+.|.+.|+.|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 46789999998 69999999999999999976654
No 448
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=75.28 E-value=4.4 Score=42.77 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEecc---chHHHHHHHHHHHCCCeEEE
Q 007820 411 NKELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (588)
Q Consensus 411 g~~l~GkrVaIQGf---GNVG~~aAe~L~e~GAKVVa 444 (588)
+.+|+||+++|.|. .-.|..+|+.|.+.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45799999999999 66999999999999999876
No 449
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=75.26 E-value=8.8 Score=39.87 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-.|.+|+|.|. |.||..+++++..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999997 999999999999999998776644
No 450
>PLN00198 anthocyanidin reductase; Provisional
Probab=75.21 E-value=4.5 Score=42.05 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++++|+|.| .|-+|+++++.|.+.|++|++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 46789999998 79999999999999999986554
No 451
>PLN02214 cinnamoyl-CoA reductase
Probab=75.18 E-value=4.5 Score=42.65 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.3
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEc
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
+++++|+|.|. |-+|+++++.|.+.|.+|++++-
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57899999996 99999999999999999887653
No 452
>PLN02427 UDP-apiose/xylose synthase
Probab=75.17 E-value=4.6 Score=43.05 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEec-cchHHHHHHHHHHHC-CCeEEEEE
Q 007820 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAY-GAIPVSVS 446 (588)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aAe~L~e~-GAKVVaVS 446 (588)
|+.++.+||+|.| .|-+|+++++.|.+. |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 5667888999999 599999999999998 58888775
No 453
>PRK09242 tropinone reductase; Provisional
Probab=75.16 E-value=4.9 Score=39.75 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.++||+++|.| .|.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 48999999999999999976554
No 454
>PRK07856 short chain dehydrogenase; Provisional
Probab=74.96 E-value=5.5 Score=39.38 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999984 8899999999999999976553
No 455
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.84 E-value=4.8 Score=40.72 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=27.9
Q ss_pred CCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++|+|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4678999996 9999999999999999977654
No 456
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.81 E-value=8.4 Score=40.71 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-.|.+|+|.|. |.||..+++++..+|++|++++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46899999998 999999999999999998776543
No 457
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=74.74 E-value=26 Score=33.81 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCc-EEEEeccchHH---HHHHHHHHHCCCeEEE
Q 007820 394 ATGYGLVFFAQLILADMNKELKGL-RCVVSGSGKIA---MHVLEKLIAYGAIPVS 444 (588)
Q Consensus 394 ATG~GV~~~i~~~l~~~g~~l~Gk-rVaIQGfGNVG---~~aAe~L~e~GAKVVa 444 (588)
..|++++..++..+. ..+.+ -+++.|.||=| ..+|+.|.+.|.+|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 457777776665543 33444 45778998866 5889999999999654
No 458
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.72 E-value=5.2 Score=40.03 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++++++++|.|. |-+|+.+|+.|.+.|++|+. .|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAI-VDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 478999999985 89999999999999999654 454
No 459
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=74.70 E-value=11 Score=37.97 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceeec
Q 007820 425 GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFP 504 (588)
Q Consensus 425 GNVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIP 504 (588)
-..+..+++.|.+.|.+++-|+=. .|+.++. +..+++ .|| |++|=
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~-----t~~a~~~-----i~~l~~----------~~~---------------~~~vG 63 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLR-----TPVALDA-----IRLLRK----------EVP---------------DALIG 63 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC-----CccHHHH-----HHHHHH----------HCC---------------CCEEE
Confidence 445667788888889888877754 3443321 222211 122 34443
Q ss_pred CCCcCccchhhHHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceEecccc
Q 007820 505 CASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMA 555 (588)
Q Consensus 505 cA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~viPD~l 555 (588)
.+.++|.+.++..++.||+.|+- | ++++..+..+++||.++|+..
T Consensus 64 --AGTVl~~~~a~~a~~aGA~Fivs----P~~~~~v~~~~~~~~i~~iPG~~ 109 (204)
T TIGR01182 64 --AGTVLNPEQLRQAVDAGAQFIVS----PGLTPELAKHAQDHGIPIIPGVA 109 (204)
T ss_pred --EEeCCCHHHHHHHHHcCCCEEEC----CCCCHHHHHHHHHcCCcEECCCC
Confidence 35788999999999999999973 4 578888999999999999654
No 460
>PRK06914 short chain dehydrogenase; Provisional
Probab=74.63 E-value=5.1 Score=40.19 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++|.| .|-+|.++|+.|.+.|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 578899988 59999999999999999987764
No 461
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.59 E-value=5.4 Score=38.71 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++.+++++|.|. |.+|+.+|+.|.+.|++|+.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 477899999984 999999999999999998766344
No 462
>PRK09620 hypothetical protein; Provisional
Probab=74.59 E-value=5.2 Score=40.75 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=29.3
Q ss_pred CCCcEEEEecc-----------------chHHHHHHHHHHHCCCeEEEEEc
Q 007820 414 LKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 414 l~GkrVaIQGf-----------------GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
++|++|.|.+- |-+|+++|+.|.+.|+.|+.|..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 47889988843 89999999999999999887764
No 463
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.56 E-value=12 Score=37.65 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCCccccccceeecC
Q 007820 426 KIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPC 505 (588)
Q Consensus 426 NVG~~aAe~L~e~GAKVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~eil~~dcDILIPc 505 (588)
.-+..+++.|.+.|.+++=|+=+ .|+.++. |..++ ++|| |++|=+
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~-----tp~a~~~-----I~~l~----------~~~~---------------~~~vGA 60 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLR-----TPAALDA-----IRAVA----------AEVE---------------EAIVGA 60 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC-----CccHHHH-----HHHHH----------HHCC---------------CCEEee
Confidence 34567788888899888888755 4554321 22211 1121 344443
Q ss_pred CCcCccchhhHHhhhhcCCeEEEecCCCC-CCHHHHHHHHHCCceEeccccc
Q 007820 506 ASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAA 556 (588)
Q Consensus 506 A~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI~viPD~la 556 (588)
+.++|.+.+++.++.||++|+ .| ++++-.+..+++||.++|+.+.
T Consensus 61 --GTVl~~e~a~~ai~aGA~Fiv----SP~~~~~vi~~a~~~~i~~iPG~~T 106 (201)
T PRK06015 61 --GTILNAKQFEDAAKAGSRFIV----SPGTTQELLAAANDSDVPLLPGAAT 106 (201)
T ss_pred --EeCcCHHHHHHHHHcCCCEEE----CCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 578899999999999999999 45 6788889999999999998753
No 464
>PRK07825 short chain dehydrogenase; Provisional
Probab=74.54 E-value=5.6 Score=39.84 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++|++++|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 578899999985 899999999999999996543
No 465
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=74.36 E-value=4.8 Score=40.01 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.2
Q ss_pred cEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|.|.| .|++|+.++..|.+.|..|+ +.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEc
Confidence 4799997 99999999999999998864 4454
No 466
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.18 E-value=5.3 Score=39.48 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++|++++|.| .|.+|.++|+.|.+.|++|+. .++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl-~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIII-NDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEE-EcC
Confidence 57899999998 589999999999999999764 444
No 467
>PRK08017 oxidoreductase; Provisional
Probab=74.18 E-value=4.9 Score=39.50 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=26.8
Q ss_pred cEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
++|+|.|. |.+|+.+|+.|.+.|++|+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 58999997 9999999999999999977654
No 468
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=74.09 E-value=5 Score=40.31 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCCCcEEEEecc---chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf---GNVG~~aAe~L~e~GAKVVaV 445 (588)
+++||+++|.|. +-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 478999999996 479999999999999997543
No 469
>PRK07577 short chain dehydrogenase; Provisional
Probab=74.06 E-value=5.6 Score=38.53 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEc
Q 007820 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSD 447 (588)
++++++|.|. |.+|.++++.|.+.|++|+.+.-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 5788999985 89999999999999999877653
No 470
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.06 E-value=5.4 Score=39.97 Aligned_cols=36 Identities=31% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCCCcEEEEeccc---hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 412 KELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 412 ~~l~GkrVaIQGfG---NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++||+++|.|.+ .+|..+|+.|.+.|++|+ +.+.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r 44 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYL 44 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 36789999999965 699999999999999964 4555
No 471
>PLN02253 xanthoxin dehydrogenase
Probab=73.93 E-value=5.5 Score=40.02 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
.++|++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 57899999998 5899999999999999997654
No 472
>PRK08589 short chain dehydrogenase; Validated
Probab=73.85 E-value=5.7 Score=40.09 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaV 445 (588)
.++||+++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999986 889999999999999997655
No 473
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=73.81 E-value=13 Score=39.06 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+.+++++|.| ++..|..+|+.|.+.|+.+|-|+=+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 46789999999 5999999999999999998877643
No 474
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.79 E-value=4.3 Score=46.13 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|++|+|+|.|.+|..+|..|.++|++| .|.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V-~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAV-TIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeE-EEEec
Confidence 46899999999999999999999999994 56664
No 475
>PRK06198 short chain dehydrogenase; Provisional
Probab=73.74 E-value=5.8 Score=39.17 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.2
Q ss_pred CCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.+++++|+|.|. |.+|..+++.|.+.|++.|.+.++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 478899999984 899999999999999994455555
No 476
>PRK12744 short chain dehydrogenase; Provisional
Probab=73.70 E-value=5.8 Score=39.36 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEc
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSD 447 (588)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 57889999998 689999999999999999776643
No 477
>PRK06114 short chain dehydrogenase; Provisional
Probab=73.63 E-value=5.9 Score=39.29 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+++|++++|.| .|-+|+++|+.|.+.|++|+. .+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~-~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVAL-FDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 57899999998 578999999999999999764 444
No 478
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=73.58 E-value=13 Score=34.36 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCCCccHHHHHHHHHHHHHHh-CCCCCCcEEEEec--------cchHHHHHHHHHHHCCCeEEEEEcCCCe
Q 007820 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGY 451 (588)
Q Consensus 389 ~~r~eATG~GV~~~i~~~l~~~-g~~l~GkrVaIQG--------fGNVG~~aAe~L~e~GAKVVaVSDs~G~ 451 (588)
.++...|-|....+++.+.+.. ...++...|.|.| .|.-...+.+.|.+.|.+|+.|.|..-.
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpi 109 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 109 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 4678899999988888776543 3567888999999 6787889999999999999999997443
No 479
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=73.52 E-value=4.2 Score=42.93 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=32.6
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
|+..+|.|.|.|.+|..+|+.|...|.+-|++.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 577899999999999999999999999888888853
No 480
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.48 E-value=6.2 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.4
Q ss_pred cEEEEec-cchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+|+|.| .+.+|..+|+.|.+.|+++|.+...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r 33 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSR 33 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeee
Confidence 6788888 7999999999999998877766665
No 481
>PRK06182 short chain dehydrogenase; Validated
Probab=73.48 E-value=5.7 Score=39.87 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCcEEEEecc-chHHHHHHHHHHHCCCeEEEEE
Q 007820 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++|.|. |.+|+++|+.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999995 8999999999999999987654
No 482
>PRK07831 short chain dehydrogenase; Provisional
Probab=73.28 E-value=5.6 Score=39.56 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=29.1
Q ss_pred CCCCcEEEEecc-c-hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 413 ELKGLRCVVSGS-G-KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 413 ~l~GkrVaIQGf-G-NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.++|++++|.|. | .+|..+|+.|.+.|++|+ +.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 467899999996 6 699999999999999965 4444
No 483
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=73.28 E-value=14 Score=35.13 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCCCCccHHHHHHHHHHHHHHh-CCCCCCcEEEEec--------cchHHHHHHHHHHHCCCeEEEEEcCCCeeeC
Q 007820 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVD 454 (588)
Q Consensus 389 ~~r~eATG~GV~~~i~~~l~~~-g~~l~GkrVaIQG--------fGNVG~~aAe~L~e~GAKVVaVSDs~G~Iyd 454 (588)
.|+..+|-|....+++.+.+.. ...++...|.|-| .|.-...+.+.|.+.|.+|+.|.|..-.-+|
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN 119 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 119 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 4678899999988888876643 3578889999999 7787888999999999999999997544443
No 484
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.28 E-value=5.7 Score=41.37 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=30.2
Q ss_pred CCCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
.+++|++++|.| .+.+|..+|+.|.+.|++|+.++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 368999999998 47899999999999999976553
No 485
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=73.27 E-value=4.1 Score=47.64 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcCC
Q 007820 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (588)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs~ 449 (588)
..|+..+|+|.|.|-+|..+|+.|...|.+-+++.|.+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 35789999999999999999999999999888999863
No 486
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.23 E-value=6.4 Score=38.44 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
++++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46788999998 58999999999999999976543
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.20 E-value=4.5 Score=43.99 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=26.1
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEE
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaV 445 (588)
++|+|.|+|++|+.+++.|.+.|..|+.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI 29 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999997644
No 488
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=73.09 E-value=4.5 Score=41.70 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=26.3
Q ss_pred cEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++|.|.|.|++|+.+|..|.+.|.+| .+.|.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V-~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTV-YGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEE-EEEEC
Confidence 37999999999999999999999885 44454
No 489
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=73.02 E-value=60 Score=33.41 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCCCcEEEEeccchHHHHHHHHHHHCCC-eEEEE
Q 007820 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aAe~L~e~GA-KVVaV 445 (588)
..+|.+|+|.|.|.||+.+++.+..+|+ +|+++
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~ 198 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAV 198 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence 3468999999999999999999999996 77766
No 490
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=73.00 E-value=13 Score=39.07 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=70.4
Q ss_pred cEEEEeccchHHHHHHHHHHHCCC---eEEEEEcCCCeeeCCCCCCHHHHHHHHHHhhccCChhhhhhccCCceEeCCCC
Q 007820 417 LRCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (588)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GA---KVVaVSDs~G~IydpdGLDie~L~~L~~~k~~~gsL~~y~~~~p~a~~i~~~e 493 (588)
++|.+.|+||+|+.++.-|.+.|. .-|.|+++ +.+++..+. +.|+.. ..++..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------~~e~~~~l~-------------~~~g~~-~~~~~~ 57 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------SEEKRAALA-------------AEYGVV-TTTDNQ 57 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------CHHHHHHHH-------------HHcCCc-ccCcHH
Confidence 479999999999999999999992 45677776 233321111 123222 222333
Q ss_pred ccccccceeecCCCcCccchhhHHhhh-hcCCeEEEecCCCCCCHHHHHHHH-HCCceEeccccccccCcee
Q 007820 494 PWNERCDVAFPCASQNEIDQSDAINLV-NSGCRILVEGSNMPCTPEAVDVLK-KANVLIAPAMAAGAGGVVA 563 (588)
Q Consensus 494 il~~dcDILIPcA~~n~It~enA~~l~-~~~akiVvEgAN~P~T~eA~~iL~-~rGI~viPD~laNAGGViv 563 (588)
.+..++|++|-|--...+ .+....|. ..+-++|+--|=+-....-.+.|- .+=+.++|...+-.|--+.
T Consensus 58 ~~~~~advv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t 128 (266)
T COG0345 58 EAVEEADVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVT 128 (266)
T ss_pred HHHhhCCEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcce
Confidence 456689999987655333 22233331 124556665554444444445553 3335788988776664333
No 491
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.91 E-value=11 Score=37.63 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCcEEEEeccchHHHHHHHHHHHCC
Q 007820 415 KGLRCVVSGSGKIAMHVLEKLIAYG 439 (588)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~G 439 (588)
+.+||.|.|.|++|..++..|.+.|
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~ 27 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTS 27 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC
Confidence 4579999999999999999998876
No 492
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.72 E-value=6 Score=36.30 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.8
Q ss_pred EEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
|+|.|.|++|...|-.|++.|..|..++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999997655543
No 493
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=72.66 E-value=9.2 Score=36.56 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=36.3
Q ss_pred HHHHHHhC-CCCCCcEEEEeccchH---H-------HHHHHHHHHCCCeEEEEEcCCCeeeC
Q 007820 404 QLILADMN-KELKGLRCVVSGSGKI---A-------MHVLEKLIAYGAIPVSVSDAKGYLVD 454 (588)
Q Consensus 404 ~~~l~~~g-~~l~GkrVaIQGfGNV---G-------~~aAe~L~e~GAKVVaVSDs~G~Iyd 454 (588)
+.+++.+. .+++||+|+|.|+|+- + ..+.++|.++|+++|+-...+|+.++
T Consensus 65 ~~fl~~l~~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~ 126 (167)
T TIGR01752 65 EDFLPTLEELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFE 126 (167)
T ss_pred HHHHHHhhcCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccc
Confidence 33444332 4689999999999864 1 24455667789999999988886654
No 494
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=72.62 E-value=6.1 Score=39.13 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=28.8
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaV 445 (588)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 36789999998 5999999999999999997654
No 495
>PLN02686 cinnamoyl-CoA reductase
Probab=72.62 E-value=6 Score=42.34 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 411 g~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
+.+.++++|+|.|. |-+|+++++.|.+.|++|+++++.
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35678999999995 999999999999999998877654
No 496
>PRK08278 short chain dehydrogenase; Provisional
Probab=72.56 E-value=6.5 Score=39.76 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-cchHHHHHHHHHHHCCCeEEEEE
Q 007820 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (588)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aAe~L~e~GAKVVaVS 446 (588)
+++|++++|.| .|-+|+++|+.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 47889999998 58999999999999999976664
No 497
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=72.52 E-value=5 Score=46.52 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.1
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
..|++|+|+|.|..|..+|..|.+.|++ |.|.|.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~ 358 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDR 358 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 3689999999999999999999999999 466664
No 498
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.38 E-value=6.3 Score=39.57 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=30.4
Q ss_pred CCCCCcEEEEecc-chHHHHHHHHHHHCCCeEEEEEcC
Q 007820 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
.++++++++|.|. |.+|+++|+.|.+.|++|+. .+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~-~~r 42 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAI-LDR 42 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 3678999999985 89999999999999999654 444
No 499
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.35 E-value=6.3 Score=40.02 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCCcEEEEeccc---hHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfG---NVG~~aAe~L~e~GAKVVaVSDs 448 (588)
++||+++|.|.+ .+|..+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 789999999986 699999999999999975 4444
No 500
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=72.25 E-value=71 Score=33.80 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=28.8
Q ss_pred CCCcEEEEeccchHHHHHHHHHHHCCCeEEEEEcC
Q 007820 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (588)
Q Consensus 414 l~GkrVaIQGfGNVG~~aAe~L~e~GAKVVaVSDs 448 (588)
-.|.+|+|.|.|.||+.+++.+...|+++|.++|.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~ 219 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDI 219 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35889999999999999999999999964444444
Done!