BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007822
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NRX|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
Prc1, A Conserved Non-Motor Microtubule Binding Protein
pdb|3NRX|B Chain B, Insights Into Anti-Parallel Microtubule Crosslinking By
Prc1, A Conserved Non-Motor Microtubule Binding Protein
Length = 130
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 382 KEILDKVEKWMSACEEESW-----LEDYNRDENRYNASRGAHLNLKRAEKARILVNK-IP 435
KE+ + V+KW EE+W E D NR+ +RG NL + EK R + K +P
Sbjct: 13 KELFEGVQKW-----EETWRLFLEFERKASDPNRF-TNRGG--NLLKEEKQRAKLQKMLP 64
Query: 436 ALVETLVAKTRAWEEDHGISFTYDGVPLLAMLDE 469
L E L A+ WE++H +F +G + + E
Sbjct: 65 KLEEELKARIELWEQEHSKAFMVNGQKFMEYVAE 98
>pdb|3NRY|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
Prc1, A Conserved Microtubule Binding Protein
Length = 130
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 382 KEILDKVEKWMSACEEESW-----LEDYNRDENRYNASRGAHLNLKRAEKARILVNK-IP 435
KE+ + V+KW EE+W E D NR+ +RG NL + EK R + K +P
Sbjct: 13 KELFEGVQKW-----EETWRLFLEFERKASDPNRF-TNRGG--NLLKEEKQRAKLQKXLP 64
Query: 436 ALVETLVAKTRAWEEDHGISFTYDGVPLLAMLDE 469
L E L A+ WE++H +F +G + E
Sbjct: 65 KLEEELKARIELWEQEHSKAFXVNGQKFXEYVAE 98
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 169 AQLQELQKE--KSD----RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQS 222
+ QEL+ E KS+ RLH +F++T+ L G+ G D F ++V+ L
Sbjct: 130 PRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL------YC 183
Query: 223 KSISNDTLARLA 234
+S+ N TL A
Sbjct: 184 ESVHNFTLPSWA 195
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 169 AQLQELQKE--KSD----RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQS 222
+ QEL+ E KS+ RLH +F++T+ L G+ G D F ++V+ L
Sbjct: 130 PRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL------YC 183
Query: 223 KSISNDTLARLA 234
+S+ N TL A
Sbjct: 184 ESVHNFTLPSWA 195
>pdb|2ZME|A Chain A, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 258
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMD 202
K+LD ++ L+E + + K EF D+C +G+D
Sbjct: 38 KQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD 78
>pdb|3CUQ|A Chain A, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 234
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMD 202
K+LD ++ L+E + + K EF D+C +G+D
Sbjct: 14 KQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,654,971
Number of Sequences: 62578
Number of extensions: 610536
Number of successful extensions: 1556
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1546
Number of HSP's gapped (non-prelim): 23
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)