Query 007822
Match_columns 588
No_of_seqs 253 out of 509
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 7E-112 2E-116 928.7 63.5 567 1-577 1-571 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 3.1E-80 6.8E-85 698.7 13.9 450 37-510 2-469 (619)
3 PF03999 MAP65_ASE1: Microtubu 99.9 1.4E-24 3.1E-29 246.0 11.0 400 15-497 34-460 (619)
4 KOG4302 Microtubule-associated 99.9 1.2E-19 2.6E-24 201.1 47.9 351 75-451 21-386 (660)
5 PF06160 EzrA: Septation ring 94.3 12 0.00027 42.7 26.0 69 15-86 57-126 (560)
6 PRK04778 septation ring format 94.2 13 0.00029 42.5 27.9 66 18-86 64-130 (569)
7 PF12128 DUF3584: Protein of u 92.7 35 0.00075 42.8 31.1 46 222-267 765-813 (1201)
8 PRK02224 chromosome segregatio 92.6 29 0.00063 41.8 31.0 32 162-193 258-289 (880)
9 PF15070 GOLGA2L5: Putative go 91.3 33 0.00072 39.7 25.2 209 35-274 11-227 (617)
10 KOG4674 Uncharacterized conser 90.6 63 0.0014 41.6 32.7 135 38-200 635-776 (1822)
11 KOG4643 Uncharacterized coiled 90.5 47 0.001 40.0 34.2 77 107-197 260-336 (1195)
12 KOG0933 Structural maintenance 90.4 37 0.00081 40.8 21.1 73 225-315 903-975 (1174)
13 PHA02562 46 endonuclease subun 89.5 42 0.00091 38.0 28.3 96 34-142 149-244 (562)
14 KOG0250 DNA repair protein RAD 89.4 59 0.0013 39.5 22.2 40 157-196 332-371 (1074)
15 TIGR03185 DNA_S_dndD DNA sulfu 88.5 55 0.0012 38.1 29.4 40 298-337 480-519 (650)
16 KOG0933 Structural maintenance 88.3 67 0.0015 38.8 31.2 50 297-354 905-954 (1174)
17 TIGR03185 DNA_S_dndD DNA sulfu 87.2 66 0.0014 37.5 36.8 243 100-389 205-455 (650)
18 KOG4674 Uncharacterized conser 87.0 1.1E+02 0.0023 39.7 33.9 263 20-336 545-821 (1822)
19 KOG0161 Myosin class II heavy 86.8 1.2E+02 0.0025 39.9 32.7 325 39-397 1041-1368(1930)
20 KOG0612 Rho-associated, coiled 86.3 95 0.0021 38.4 31.5 37 47-83 494-530 (1317)
21 PHA02562 46 endonuclease subun 85.3 16 0.00036 41.3 14.6 19 228-246 386-404 (562)
22 PRK11637 AmiB activator; Provi 85.0 66 0.0014 35.4 20.4 42 101-142 44-85 (428)
23 TIGR00634 recN DNA repair prot 83.9 40 0.00087 38.5 16.8 123 52-202 264-394 (563)
24 KOG1029 Endocytic adaptor prot 82.6 50 0.0011 38.7 16.2 68 59-141 435-502 (1118)
25 KOG0996 Structural maintenance 80.9 1.5E+02 0.0033 36.6 32.3 98 226-333 933-1032(1293)
26 KOG0161 Myosin class II heavy 80.5 2E+02 0.0044 37.8 32.7 148 53-203 1195-1342(1930)
27 KOG0964 Structural maintenance 79.6 1.5E+02 0.0033 35.9 20.6 301 160-492 676-1001(1200)
28 PF08317 Spc7: Spc7 kinetochor 79.0 92 0.002 33.0 16.4 85 105-205 210-298 (325)
29 PRK11637 AmiB activator; Provi 78.7 1.1E+02 0.0024 33.7 18.4 27 230-256 200-226 (428)
30 COG1340 Uncharacterized archae 77.1 1E+02 0.0022 32.4 22.4 121 55-183 21-152 (294)
31 TIGR00606 rad50 rad50. This fa 76.8 2.2E+02 0.0048 36.2 37.8 209 161-395 527-742 (1311)
32 PF12128 DUF3584: Protein of u 76.5 2.2E+02 0.0047 35.9 30.9 44 157-200 766-812 (1201)
33 PF03915 AIP3: Actin interacti 74.9 1.4E+02 0.0031 33.0 18.7 171 161-391 150-321 (424)
34 TIGR03007 pepcterm_ChnLen poly 74.0 1.5E+02 0.0033 33.0 22.3 143 55-200 205-348 (498)
35 PLN03188 kinesin-12 family pro 73.5 2.5E+02 0.0054 35.2 22.6 32 230-261 969-1005(1320)
36 COG5185 HEC1 Protein involved 72.0 1.7E+02 0.0037 32.6 22.4 41 299-339 534-577 (622)
37 KOG0971 Microtubule-associated 71.7 2E+02 0.0043 34.7 17.1 147 64-252 899-1050(1243)
38 PRK09039 hypothetical protein; 71.6 1.5E+02 0.0032 31.8 18.7 134 99-242 111-252 (343)
39 PF10146 zf-C4H2: Zinc finger- 71.4 1.2E+02 0.0026 30.7 14.5 103 51-202 5-108 (230)
40 COG4026 Uncharacterized protei 70.8 56 0.0012 32.7 11.0 46 227-272 169-214 (290)
41 PF11995 DUF3490: Domain of un 70.5 65 0.0014 30.5 10.9 99 252-356 3-123 (161)
42 PF08317 Spc7: Spc7 kinetochor 70.5 1.5E+02 0.0033 31.4 22.2 83 61-143 75-163 (325)
43 TIGR00634 recN DNA repair prot 70.4 2E+02 0.0044 32.9 24.2 75 295-388 298-372 (563)
44 TIGR02169 SMC_prok_A chromosom 69.3 2.9E+02 0.0062 34.1 33.1 36 163-198 799-834 (1164)
45 PF06705 SF-assemblin: SF-asse 68.2 1.4E+02 0.0031 30.2 16.2 42 159-200 198-239 (247)
46 cd07664 BAR_SNX2 The Bin/Amphi 68.0 1.4E+02 0.0031 30.2 18.3 38 299-336 185-229 (234)
47 TIGR02168 SMC_prok_B chromosom 65.1 3.4E+02 0.0073 33.4 32.0 12 300-311 910-921 (1179)
48 KOG2129 Uncharacterized conser 64.5 2.2E+02 0.0048 31.2 20.5 46 228-279 179-224 (552)
49 PF05557 MAD: Mitotic checkpoi 63.0 37 0.0008 40.1 9.8 37 159-195 500-536 (722)
50 PF10498 IFT57: Intra-flagella 62.2 2.1E+02 0.0045 31.0 14.4 76 52-138 218-293 (359)
51 PF13543 KSR1-SAM: SAM like do 60.6 88 0.0019 28.8 9.6 113 158-280 9-126 (129)
52 PRK10869 recombination and rep 60.3 3.1E+02 0.0067 31.4 25.4 34 104-137 164-197 (553)
53 COG5293 Predicted ATPase [Gene 58.6 2.9E+02 0.0062 30.8 14.4 57 19-82 299-356 (591)
54 PF09789 DUF2353: Uncharacteri 57.9 2.6E+02 0.0056 29.8 25.3 261 50-334 26-317 (319)
55 cd09234 V_HD-PTP_like Protein- 56.7 2.7E+02 0.0059 29.6 27.6 114 75-194 107-220 (337)
56 smart00806 AIP3 Actin interact 55.2 3.3E+02 0.0071 30.1 27.3 172 161-391 154-325 (426)
57 PF15066 CAGE1: Cancer-associa 55.1 2.1E+02 0.0045 31.8 12.8 67 237-317 406-472 (527)
58 COG3883 Uncharacterized protei 54.7 2.2E+02 0.0047 29.5 12.4 145 102-261 29-181 (265)
59 PF11995 DUF3490: Domain of un 54.4 11 0.00024 35.6 2.7 24 323-346 3-26 (161)
60 PF06705 SF-assemblin: SF-asse 54.2 2.5E+02 0.0054 28.4 19.4 82 160-260 151-233 (247)
61 PF07106 TBPIP: Tat binding pr 53.3 1.4E+02 0.003 28.4 10.3 87 158-279 68-154 (169)
62 smart00787 Spc7 Spc7 kinetocho 52.4 3.1E+02 0.0068 29.0 22.6 84 60-143 69-158 (312)
63 PF08606 Prp19: Prp19/Pso4-lik 52.2 1.2E+02 0.0026 24.9 8.0 65 13-79 3-68 (70)
64 PF13870 DUF4201: Domain of un 52.0 2.2E+02 0.0048 27.2 19.6 77 109-200 4-80 (177)
65 PF11629 Mst1_SARAH: C termina 49.2 24 0.00052 26.8 3.3 25 365-389 22-47 (49)
66 KOG1029 Endocytic adaptor prot 48.8 5.4E+02 0.012 30.7 18.6 69 116-200 435-503 (1118)
67 PF13949 ALIX_LYPXL_bnd: ALIX 48.3 3.2E+02 0.007 28.0 20.0 68 186-258 104-171 (296)
68 COG0497 RecN ATPase involved i 48.3 3.8E+02 0.0083 30.7 14.1 134 52-213 260-401 (557)
69 PRK03918 chromosome segregatio 47.9 5.7E+02 0.012 30.7 35.9 26 358-383 448-473 (880)
70 PF10239 DUF2465: Protein of u 47.3 3.8E+02 0.0082 28.5 19.5 133 18-183 62-209 (318)
71 KOG0976 Rho/Rac1-interacting s 47.1 5.8E+02 0.013 30.6 31.5 86 49-142 87-172 (1265)
72 PF04949 Transcrip_act: Transc 46.8 1.5E+02 0.0033 27.8 8.8 32 53-84 90-121 (159)
73 cd09237 V_ScBro1_like Protein- 46.8 3.9E+02 0.0085 28.6 31.9 197 48-259 7-229 (356)
74 smart00787 Spc7 Spc7 kinetocho 45.5 4E+02 0.0086 28.3 20.2 21 222-242 265-285 (312)
75 PF12252 SidE: Dot/Icm substra 44.8 7E+02 0.015 30.9 19.7 38 221-266 1232-1269(1439)
76 KOG3091 Nuclear pore complex, 43.8 5.2E+02 0.011 29.1 14.7 69 47-119 355-426 (508)
77 KOG0994 Extracellular matrix g 42.9 7.8E+02 0.017 30.9 22.8 39 228-266 1591-1629(1758)
78 PF11172 DUF2959: Protein of u 42.0 3.6E+02 0.0078 26.7 23.0 179 14-249 5-184 (201)
79 KOG0977 Nuclear envelope prote 41.8 5.9E+02 0.013 29.2 22.8 91 106-200 94-186 (546)
80 COG1196 Smc Chromosome segrega 41.7 8.2E+02 0.018 30.8 35.0 25 434-458 1067-1093(1163)
81 PF08614 ATG16: Autophagy prot 40.4 69 0.0015 31.3 6.1 83 101-199 71-153 (194)
82 cd09234 V_HD-PTP_like Protein- 40.0 4.9E+02 0.011 27.7 32.2 193 48-259 7-219 (337)
83 PF15070 GOLGA2L5: Putative go 39.9 6.7E+02 0.014 29.3 25.3 80 101-187 26-105 (617)
84 KOG1666 V-SNARE [Intracellular 38.6 1.2E+02 0.0026 30.3 7.3 69 48-119 19-87 (220)
85 PF00038 Filament: Intermediat 38.4 4.7E+02 0.01 27.1 29.3 36 361-402 261-296 (312)
86 COG4026 Uncharacterized protei 37.9 4.4E+02 0.0095 26.6 11.7 43 99-141 130-172 (290)
87 cd09237 V_ScBro1_like Protein- 37.6 5.4E+02 0.012 27.5 27.4 125 68-194 94-230 (356)
88 PRK05771 V-type ATP synthase s 37.3 5.1E+02 0.011 30.2 13.6 142 227-389 92-242 (646)
89 KOG0018 Structural maintenance 37.2 9E+02 0.02 30.0 27.9 305 27-395 649-962 (1141)
90 COG1340 Uncharacterized archae 37.2 5.2E+02 0.011 27.2 20.1 159 53-261 68-233 (294)
91 KOG0977 Nuclear envelope prote 37.0 6.9E+02 0.015 28.6 20.2 33 54-86 99-131 (546)
92 PRK09039 hypothetical protein; 35.8 5.8E+02 0.012 27.3 19.1 105 63-198 48-152 (343)
93 KOG4398 Predicted coiled-coil 35.5 1.9E+02 0.0042 30.0 8.3 82 231-322 8-89 (359)
94 PF05667 DUF812: Protein of un 34.8 7.8E+02 0.017 28.6 15.8 205 228-459 328-535 (594)
95 KOG0921 Dosage compensation co 34.2 69 0.0015 38.5 5.6 25 498-524 1155-1179(1282)
96 KOG4196 bZIP transcription fac 34.1 1.1E+02 0.0023 28.2 5.7 67 13-85 27-105 (135)
97 PF04108 APG17: Autophagy prot 34.0 6.7E+02 0.014 27.5 31.1 323 14-364 26-403 (412)
98 TIGR02168 SMC_prok_B chromosom 33.3 9.9E+02 0.022 29.3 31.9 18 433-450 969-986 (1179)
99 KOG2220 Predicted signal trans 33.0 9E+02 0.02 28.7 17.7 35 159-193 534-568 (714)
100 PF10147 CR6_interact: Growth 32.6 5.3E+02 0.011 25.9 12.4 51 420-470 119-187 (217)
101 PF10398 DUF2443: Protein of u 32.3 2.9E+02 0.0064 22.9 7.4 52 322-380 12-68 (79)
102 PRK05771 V-type ATP synthase s 32.1 8.7E+02 0.019 28.3 14.8 32 226-257 213-244 (646)
103 cd00890 Prefoldin Prefoldin is 31.3 3.7E+02 0.008 23.7 9.6 38 227-264 86-123 (129)
104 COG1579 Zn-ribbon protein, pos 31.3 5.8E+02 0.013 26.0 18.7 128 51-200 42-173 (239)
105 KOG0995 Centromere-associated 31.3 8.6E+02 0.019 28.0 24.5 70 66-140 233-309 (581)
106 cd07627 BAR_Vps5p The Bin/Amph 31.1 5.3E+02 0.011 25.5 16.1 36 301-336 171-213 (216)
107 PF12252 SidE: Dot/Icm substra 30.6 1.1E+03 0.025 29.2 29.0 154 225-396 1176-1343(1439)
108 PF09730 BicD: Microtubule-ass 30.5 9.9E+02 0.021 28.4 27.3 146 251-434 547-697 (717)
109 PF10168 Nup88: Nuclear pore c 29.3 1E+03 0.022 28.3 25.8 36 222-257 679-714 (717)
110 TIGR02338 gimC_beta prefoldin, 28.3 4.1E+02 0.0089 23.3 8.9 33 228-260 74-106 (110)
111 PF13949 ALIX_LYPXL_bnd: ALIX 28.2 6.6E+02 0.014 25.7 26.2 127 57-190 39-169 (296)
112 PF06248 Zw10: Centromere/kine 27.8 5.9E+02 0.013 29.3 12.0 38 440-477 343-382 (593)
113 KOG2398 Predicted proline-seri 27.7 1E+03 0.022 27.7 15.8 160 226-404 7-186 (611)
114 PF15066 CAGE1: Cancer-associa 27.2 9.3E+02 0.02 27.0 15.4 92 101-194 394-503 (527)
115 cd09236 V_AnPalA_UmRIM20_like 27.1 8E+02 0.017 26.3 33.8 201 48-259 7-223 (353)
116 KOG4460 Nuclear pore complex, 26.7 1E+03 0.022 27.3 22.5 125 112-256 613-737 (741)
117 PF10174 Cast: RIM-binding pro 26.6 1.2E+03 0.026 28.1 38.3 137 109-274 133-270 (775)
118 PRK13798 putative OHCU decarbo 26.6 4.3E+02 0.0093 25.3 8.9 54 430-483 89-146 (166)
119 PF02994 Transposase_22: L1 tr 25.8 1.2E+02 0.0026 32.8 5.6 38 228-265 151-188 (370)
120 TIGR03180 UraD_2 OHCU decarbox 25.7 5.8E+02 0.013 24.2 9.8 54 430-483 84-141 (158)
121 PRK13799 unknown domain/N-carb 25.4 4.5E+02 0.0098 30.3 10.4 103 380-483 42-156 (591)
122 PF07058 Myosin_HC-like: Myosi 25.1 5.4E+02 0.012 27.2 9.6 84 39-144 42-134 (351)
123 PF00038 Filament: Intermediat 25.0 7.8E+02 0.017 25.4 22.5 42 160-201 214-255 (312)
124 PF02183 HALZ: Homeobox associ 25.0 2.9E+02 0.0064 20.5 6.5 43 43-86 2-44 (45)
125 PF10186 Atg14: UV radiation r 24.8 7.4E+02 0.016 25.1 13.9 40 103-142 69-108 (302)
126 TIGR02044 CueR Cu(I)-responsiv 24.7 5E+02 0.011 23.2 8.7 61 333-396 53-113 (127)
127 KOG0250 DNA repair protein RAD 24.7 1.4E+03 0.031 28.4 23.0 21 68-88 155-175 (1074)
128 cd01109 HTH_YyaN Helix-Turn-He 24.7 4.7E+02 0.01 22.8 8.5 59 334-395 54-112 (113)
129 PF10146 zf-C4H2: Zinc finger- 24.5 7.4E+02 0.016 25.0 16.0 34 161-194 31-64 (230)
130 PF05597 Phasin: Poly(hydroxya 24.4 2.4E+02 0.0051 26.1 6.3 16 227-242 108-123 (132)
131 PF05667 DUF812: Protein of un 23.9 1.2E+03 0.026 27.1 16.1 145 100-256 422-575 (594)
132 PF07058 Myosin_HC-like: Myosi 23.6 9E+02 0.019 25.7 19.5 100 297-403 13-116 (351)
133 PF09726 Macoilin: Transmembra 23.6 1.3E+03 0.028 27.4 28.1 33 161-193 417-449 (697)
134 PF07957 DUF3294: Protein of u 23.5 2.1E+02 0.0045 28.7 6.1 39 226-264 2-40 (216)
135 PRK09737 EcoKI restriction-mod 23.2 97 0.0021 33.8 4.3 86 268-380 371-457 (461)
136 KOG1854 Mitochondrial inner me 23.1 1.2E+03 0.027 27.1 21.3 40 229-268 446-487 (657)
137 PRK14127 cell division protein 23.1 5.4E+02 0.012 23.0 8.7 49 30-86 21-69 (109)
138 PHA03418 hypothetical E4 prote 23.1 1.7E+02 0.0036 29.4 5.4 40 227-269 191-230 (230)
139 PF05008 V-SNARE: Vesicle tran 23.0 1.1E+02 0.0023 25.0 3.5 18 101-118 58-75 (79)
140 KOG0995 Centromere-associated 22.7 1.2E+03 0.026 26.8 31.6 42 227-268 452-493 (581)
141 PF10267 Tmemb_cc2: Predicted 22.7 9.6E+02 0.021 26.4 11.6 109 225-375 209-318 (395)
142 PF07426 Dynactin_p22: Dynacti 22.4 7.1E+02 0.015 24.0 16.8 114 69-206 6-120 (174)
143 TIGR02231 conserved hypothetic 22.3 7.3E+02 0.016 28.0 11.3 88 54-142 78-169 (525)
144 PF09738 DUF2051: Double stran 22.3 9.4E+02 0.02 25.4 14.6 41 221-261 197-245 (302)
145 TIGR03164 UHCUDC OHCU decarbox 22.1 6.7E+02 0.015 23.7 10.1 61 423-483 77-141 (157)
146 PF09349 OHCU_decarbox: OHCU d 21.6 4.2E+02 0.0092 24.9 7.8 100 384-483 39-144 (159)
147 PF01496 V_ATPase_I: V-type AT 21.4 1.9E+02 0.004 34.5 6.5 209 180-412 31-278 (759)
148 cd07610 FCH_F-BAR The Extended 21.3 7E+02 0.015 23.5 12.2 37 231-267 86-122 (191)
149 PHA03419 E4 protein; Provision 20.9 2.3E+02 0.005 27.8 5.7 42 225-269 159-200 (200)
150 KOG4603 TBP-1 interacting prot 20.8 7.8E+02 0.017 23.9 10.8 72 156-256 73-144 (201)
151 PF10212 TTKRSYEDQ: Predicted 20.7 8.3E+02 0.018 27.8 10.7 73 47-131 442-514 (518)
152 PF06818 Fez1: Fez1; InterPro 20.6 8.5E+02 0.018 24.2 10.0 151 106-260 12-163 (202)
153 COG4942 Membrane-bound metallo 20.4 1.2E+03 0.026 25.9 21.7 180 39-259 38-220 (420)
154 PF10498 IFT57: Intra-flagella 20.4 1.1E+03 0.024 25.5 12.1 84 50-144 230-320 (359)
155 KOG3341 RNA polymerase II tran 20.3 2.6E+02 0.0057 28.0 6.0 46 102-147 34-79 (249)
156 PF11944 DUF3461: Protein of u 20.3 3E+02 0.0065 25.1 5.9 50 13-63 73-122 (125)
157 PF04111 APG6: Autophagy prote 20.0 4.5E+02 0.0097 27.8 8.3 36 51-86 47-82 (314)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=7.3e-112 Score=928.74 Aligned_cols=567 Identities=53% Similarity=0.781 Sum_probs=514.0
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 1 MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL 80 (588)
Q Consensus 1 ~~~~~~~~~~~~~~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L 80 (588)
|+.++...+....+||++++.+|+.|||+||+++++|++++..|++||+++|+++|+++...+++|+++|++++++++.|
T Consensus 1 ~~~~~~~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l 80 (660)
T KOG4302|consen 1 TVMMDSEVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDL 80 (660)
T ss_pred CCccccchhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCC
Q 007822 81 LSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLT 160 (588)
Q Consensus 81 ~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS 160 (588)
|++||++++.+. .+++..+||++++..|.+.++.|+++|++|+++|.+++.||+.||.+|||...... ++.+|+.|||
T Consensus 81 ~s~l~~~~~~~~-~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~-~~~~D~~dls 158 (660)
T KOG4302|consen 81 CSALGEPSIIGE-ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPS-FLIADESDLS 158 (660)
T ss_pred HHHhCCcccccc-cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCc-ccccCccccc
Confidence 999999887641 24578889999999999999999999999999999999999999999999821111 3566889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 007822 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (588)
Q Consensus 161 ~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L 240 (588)
+++|++|+.+|.+|++||..|+++|.+++.+|+.||.+||++|..+|.++||+|.+..+.++++||++||++|..++..|
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l 238 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKL 238 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE 320 (588)
Q Consensus 241 ~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mke 320 (588)
+++|.+|++++++|+.+|.+|||+|++|++||..|.+++ ++|++.++++|.++|.+++.||.||++||+++||+
T Consensus 239 ~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKe 312 (660)
T KOG4302|consen 239 KEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKE 312 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH
Q 007822 321 IAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESW 400 (588)
Q Consensus 321 li~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ee~~ 400 (588)
||+++|.||++||+.+||+.+......+++.++++|..|+.++|+.++.+|.++|+++.+||+|+++|++|+++|+++.|
T Consensus 313 li~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~ 392 (660)
T KOG4302|consen 313 LIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESW 392 (660)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999433334446678899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCchhhhccccchhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCceEEcCccHHHHHHHHHHHHHHHHHH
Q 007822 401 LEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVETLVAKTRAWEEDHGISFTYDGVPLLAMLDEYAMLRQEREEE 480 (588)
Q Consensus 401 Le~~~~D~nR~~~~RG~~~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l~e~~~~r~eKE~e 480 (588)
|++|++|.|||+++||||++|+||||+|++|+|||+|++.|+.++.+||.++|+||+|||++|++|+++|..||++||++
T Consensus 393 lee~n~D~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~ 472 (660)
T KOG4302|consen 393 LEEYNRDSNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQE 472 (660)
T ss_pred HhcccchhhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCccCCCCCC--CCC-CCCCCCCccccccCCCCCCCccccCccccC-
Q 007822 481 KRRMRESKKFHEQQSSEQESIFGSRPSPARPAGPKKVVGPRTN--GGV-NGTPSRRLSLNAHQNGSRSTTKEGKRESTG- 556 (588)
Q Consensus 481 k~~~R~~kk~~~~~~~e~e~~~gs~psp~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 556 (588)
|+|+|++|+.++|+.++++..|||+|||.+|+|.||..|+++| ++. .+|..|+.|.|.....+.+.....+ -++
T Consensus 473 k~r~rd~kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~~~t~~~~~~~~~ps~~~~s~~~~~~s~~~~~~~~s--~r~~ 550 (660)
T KOG4302|consen 473 KARQRDQKKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRGRSTPPNGSLSKTPSKRPLSGGNSAASTQNRTTPLS--PRRL 550 (660)
T ss_pred HHhcccccccccccCccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCccCcCCCCCCCCCcccCCCCCC--cccc
Confidence 9999999999999999999999999999999999999998875 444 4444444444333222222211111 122
Q ss_pred CCCCCCCCcccccccCCcccc
Q 007822 557 SIRPAAPVNYVAISKEDSASH 577 (588)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~ 577 (588)
+..+++|.||++..+.++.++
T Consensus 551 ~~~st~p~n~~~~~~~~~l~s 571 (660)
T KOG4302|consen 551 RASSTTPANKVARQKIESLNS 571 (660)
T ss_pred cCCCCCCchhhhccccccccc
Confidence 456778999999999988653
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=3.1e-80 Score=698.72 Aligned_cols=450 Identities=39% Similarity=0.574 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCcCC----CCCCCCCCCC
Q 007822 37 RDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE-----------KSIAG----LGIPEKTSGT 101 (588)
Q Consensus 37 r~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge-----------~~~~~----~~~~~~~~~t 101 (588)
++.|+.+++++|+++|..++++++..++.|++.|+.+++|++.|++++|. .++.. .+.....++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (619)
T PF03999_consen 2 CDLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc
Confidence 35688899999999999999999999999999999999999999544443 22211 0123356789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 007822 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLT-LKKLDEYQAQLQELQKEKSD 180 (588)
Q Consensus 102 L~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS-~~~L~~l~~~L~~Lq~Ek~~ 180 (588)
|++++..|.+.++.|++++.+|+.+|.+|+.+++.||.+||..+.... ...++..+++ .++|+.|+.+|+.|++|++.
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~-~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~ 160 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN-PFDIDESDLPSLEELEELRQHLQRLQEEKER 160 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc-cccCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987664332 1334555555 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcc-cccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 181 RLHKVLEFVSTVHDLCGVLGMDFF-STVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (588)
Q Consensus 181 R~~kv~~l~~~I~~L~~~Lgid~~-~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~ 259 (588)
|+++|.+++..|+.||.+||++|. ..+.....++. .++..++||+++|++|...++.|+++|.+|.+++++|+.+|.
T Consensus 161 R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~--~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~ 238 (619)
T PF03999_consen 161 RLEEVRELREEIISLMEELGIDPERTSFEKDLLSYS--EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIE 238 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccchhhccccc--cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 44432222211 345689999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 007822 260 DLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIE 339 (588)
Q Consensus 260 ~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~ 339 (588)
.||++|++|++||+.|... ++++|.++|+++++||+||++||+++|++||.++|.+|++|||+|||+
T Consensus 239 ~LW~~L~~~~ee~~~F~~~-------------~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s 305 (619)
T PF03999_consen 239 ELWNRLDVPEEEREAFLEE-------------NSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYS 305 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHhhc-------------cCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999654 367899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCCchhhhccccchh
Q 007822 340 IDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHL 419 (588)
Q Consensus 340 ~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ee~~Le~~~~D~nR~~~~RG~~~ 419 (588)
+++|.+|..++ . +.++|+||+.||.||++|+++|+++|+||++|++|.++|+++.|||+|++|||||+ |||||
T Consensus 306 ~eer~~F~~~~---~--d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~-~RGg~- 378 (619)
T PF03999_consen 306 EEERQAFTPFY---I--DSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLN-NRGGH- 378 (619)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG--------
T ss_pred HHHHHHHHHHh---c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc-ccccH-
Confidence 99998875332 2 25679999999999999999999999999999999999999999999999999999 99995
Q ss_pred hchHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHcCCceEEcCccHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhh
Q 007822 420 NLKRAEKARILVNK-IPALVETLVAKTRAWEEDHGISFTYDGVPLLAMLDEYAMLRQEREEEKRRMRESKKFHEQQSSEQ 498 (588)
Q Consensus 420 ~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l~e~~~~r~eKE~ek~~~R~~kk~~~~~~~e~ 498 (588)
||+|||.|++|+| ||+|++.|+.+|.+||.++|+||+|||++|+++|++|......++++|.+.|++|+.+.+..+++
T Consensus 379 -LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~ 457 (619)
T PF03999_consen 379 -LLKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTEQ 457 (619)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCcccc
Confidence 8999999999998 99999999999999999999999999999999998666666666777777788888888889999
Q ss_pred hcccCCCCCCCC
Q 007822 499 ESIFGSRPSPAR 510 (588)
Q Consensus 499 e~~~gs~psp~~ 510 (588)
+++|||+|+|.+
T Consensus 458 ~~~~~s~~s~~~ 469 (619)
T PF03999_consen 458 EMPYGSKPSPAP 469 (619)
T ss_dssp HHHC--------
T ss_pred CCCCCCccccCC
Confidence 999999877654
No 3
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.91 E-value=1.4e-24 Score=246.04 Aligned_cols=400 Identities=22% Similarity=0.307 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHhHhCCCHHHHHHHH-------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 15 TCSSLLHKLQEIWDEVGENDEERDKML-------------LQIEK-----ECLDVYKRKVEQAAKSRAQLLQALSDAKIE 76 (588)
Q Consensus 15 ~c~~ll~eL~~IWdeIG~~e~er~~~l-------------~~le~-----e~~~v~~~~V~e~~~~r~~L~q~I~~~~~E 76 (588)
....+-.++..|+.++|+..+.-...| .+... +++..++..+++....+...+++|..+..+
T Consensus 34 ~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~ 113 (619)
T PF03999_consen 34 SIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQEQ 113 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888777777644322221 12211 244456778889999999999999999999
Q ss_pred HHHHHHHhCCCCcCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC-CCCC--CC
Q 007822 77 LASLLSALGEKSIAGL-GIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS-LGDQ--AP 152 (588)
Q Consensus 77 l~~L~~eLge~~~~~~-~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~-~~~~--~~ 152 (588)
+..||..||..+.... ...+..++|-.+++..|+.+++.|+.+|..|+.+|..+..+|..+|.+|+..|. .... ..
T Consensus 114 ~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~ 193 (619)
T PF03999_consen 114 LEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLL 193 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhcc
Confidence 9999999998654310 012344555558999999999999999999999999999999999999999885 2211 11
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHH
Q 007822 153 S----VDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISND 228 (588)
Q Consensus 153 ~----v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~ 228 (588)
+ ....+||.+.|+.|...+..|+.+|..|..++..+...|..||+.|+++.+..- .+...+.++|.+
T Consensus 194 ~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~---------~F~~~~~~ls~~ 264 (619)
T PF03999_consen 194 SYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEERE---------AFLEENSGLSLD 264 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH---------HHhhccCcchHH
Confidence 1 224579999999999999999999999999999999999999999998744321 111346789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHH
Q 007822 229 TLARLAKTVLALKEDKKQRLHK-LQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEV 307 (588)
Q Consensus 229 ~L~~L~~~l~~L~e~K~~R~~k-i~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev 307 (588)
+|+.|..++++|+++|.++++. |.+.+.+|.+||+.|.+++++|..|..++. ..++.++++.++.||
T Consensus 265 ~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~------------d~~~E~lL~~hE~Ei 332 (619)
T PF03999_consen 265 TIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI------------DSYTEELLELHEEEI 332 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc------------ccchHHHHHHHHHHH
Confidence 9999999999999999999999 699999999999999999999999998875 346689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007822 308 ERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDK 387 (588)
Q Consensus 308 ~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~ 387 (588)
.||++....+ +. |++.-.+++.+|..... .++.+ .+ -.-+..-| ..||..-+..-.-.+.....-+.|..+
T Consensus 333 ~~Lk~~~~~~-k~-Il~~v~k~~~l~~~~~~-Le~~~-~D-~~Rl~~RG----g~LLkEEk~rk~i~k~lPkle~~L~~~ 403 (619)
T PF03999_consen 333 ERLKEEYESR-KP-ILELVEKWESLWEEMEE-LEESS-KD-PSRLNNRG----GHLLKEEKERKRIQKKLPKLEEELKKK 403 (619)
T ss_dssp --HHHHHHHH-HH-HHHHHHHHHHHHHHHHH-HHHHH-H--CCGG----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHHH-HHHHh-cC-hhhhcccc----cHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999986 44 55777889999986621 11110 01 00111222 336666666666677888888888888
Q ss_pred HHHHHHHhHHHHHHHHHcCCchhhhccccchhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCceEEcCccHHHHH
Q 007822 388 VEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVETLVAKTRAWEEDHGISFTYDGVPLLAML 467 (588)
Q Consensus 388 vekw~~l~~ee~~Le~~~~D~nR~~~~RG~~~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l 467 (588)
|..|+. ++ ..| |. --|- .++ +.|. ++.
T Consensus 404 l~~wE~---------e~-g~p--Fl-v~G~--~~l----------------e~l~----------------------e~~ 430 (619)
T PF03999_consen 404 LEEWEE---------EH-GKP--FL-VDGE--RYL----------------EYLE----------------------EYE 430 (619)
T ss_dssp HHHHHH---------HH-TS----E-ETTE--EHH----------------HHHH-------------------------
T ss_pred HHHHHH---------Hc-CCe--EE-EcCc--cHH----------------HHHH----------------------HHH
Confidence 998822 11 223 33 2243 111 1111 566
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhhhhhh
Q 007822 468 DEYAMLRQEREEEKRRMRESKKFHEQQSSE 497 (588)
Q Consensus 468 ~e~~~~r~eKE~ek~~~R~~kk~~~~~~~e 497 (588)
++|..++++|+..+.+.+.+.+.+.+..+-
T Consensus 431 ~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~ 460 (619)
T PF03999_consen 431 EQWERKREEKERSKQQKKLQNQKQTEQEMP 460 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhccccccCCCCCCCccccCCC
Confidence 789999999999888766666655554333
No 4
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.90 E-value=1.2e-19 Score=201.06 Aligned_cols=351 Identities=17% Similarity=0.265 Sum_probs=258.4
Q ss_pred HHHHHHHHHhCCCCcCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q 007822 75 IELASLLSALGEKSIAGLGIPEKTSGTIK-EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPS 153 (588)
Q Consensus 75 ~El~~L~~eLge~~~~~~~~~~~~~~tL~-eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~ 153 (588)
.+|+.||+++|++...+ +....-|. +.+..++..+++....+..-.+++...++++..||..|+..+..+.. .
T Consensus 21 ~eL~~IW~~igE~~~e~----d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~--~ 94 (660)
T KOG4302|consen 21 NELQKIWDEIGESETER----DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEI--S 94 (660)
T ss_pred HHHHHHHHHhCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc--c
Confidence 34999999999987542 11111122 22667888999999999999999999999999999999998765431 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHH
Q 007822 154 VDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARL 233 (588)
Q Consensus 154 v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L 233 (588)
......-.+.|..+...+..|.+.|.+|..+|.++..+|..||..||..+.. +++ ...+..+||+.-|+.|
T Consensus 95 ~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~----~~~-----~~~D~~dlsl~kLeel 165 (660)
T KOG4302|consen 95 DKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDL----PSF-----LIADESDLSLEKLEEL 165 (660)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC----Ccc-----cccCcccccHHHHHHH
Confidence 0122345689999999999999999999999999999999999999977211 111 1245788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCC--CCCChHHHHHHHHHHHHHHH
Q 007822 234 AKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTV--PGALALDLIEQAEVEVERLD 311 (588)
Q Consensus 234 ~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~--~~~lS~~~I~~~e~Ev~RLe 311 (588)
+..+..|+++|..|++++..+...|..||..||++ |..+...++++...-.. ..++|.++|+.+..-|+.|.
T Consensus 166 r~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 166 REHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 55444445555544432 57899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHh--hhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007822 312 QLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMT--LIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVE 389 (588)
Q Consensus 312 ~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~--~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~ve 389 (588)
..|.+++.. +...+..+.+||+.|..+++++..|.++.. +... ..-+.|++...+.|+.+|.+...++ |=++|.
T Consensus 240 ~~k~qr~~k-l~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~-~~ls~d~I~~ve~Ev~Rl~qlK~s~--mKeli~ 315 (660)
T KOG4302|consen 240 EEKKQRLQK-LQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEP-NSLSLDIIEQVEKEVDRLEQLKASN--MKELIE 315 (660)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhcc-ccccHHHHHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 999999999 579999999999999999999988865331 1122 2567999999999999999998887 666666
Q ss_pred HHHHHhHHHHH-HHHHcCC--ch-hhh-----ccccchhhchHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Q 007822 390 KWMSACEEESW-LEDYNRD--EN-RYN-----ASRGAHLNLKRAEKARILVNK-IPALVETLVAKTRAWEED 451 (588)
Q Consensus 390 kw~~l~~ee~~-Le~~~~D--~n-R~~-----~~RG~~~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e 451 (588)
+-..=+ ++.| +--|+-+ .. ||. .+...+..|+-.--..+.-.| ---+-+.+..++..|+..
T Consensus 316 k~r~El-eel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa 386 (660)
T KOG4302|consen 316 KKRSEL-EELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESA 386 (660)
T ss_pred HHHHHH-HHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544433 2344 2233331 11 121 133444445544111111111 233445666677777654
No 5
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.33 E-value=12 Score=42.73 Aligned_cols=69 Identities=17% Similarity=0.329 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 15 TCSSLLHKLQEIWDEVGEN-DEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 15 ~c~~ll~eL~~IWdeIG~~-e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
-+...+.+++.=|++|--. =.+.+.++.+++.. +..-.+-.++.....+.+.|..+..++..|..+|..
T Consensus 57 qt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~---~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 57 QTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY---ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999998633 34556677777752 334467778888888888888888888888877765
No 6
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.17 E-value=13 Score=42.51 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 18 SLLHKLQEIWDEVGE-NDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 18 ~ll~eL~~IWdeIG~-~e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
..+.+++.=|++|-- .=.+-+..+..++.. .+ +-.+-.++.....+.+.|...+..+..|..+|..
T Consensus 64 ~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~-~~--~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~ 130 (569)
T PRK04778 64 EKFEEWRQKWDEIVTNSLPDIEEQLFEAEEL-ND--KFRFRKAKHEINEIESLLDLIEEDIEQILEELQE 130 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-Hh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999543 333455666666642 22 2356677777777777777777777777776654
No 7
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.68 E-value=35 Score=42.82 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=35.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC
Q 007822 222 SKSISNDTLARLAKTVLALKEDKKQ---RLHKLQELATQLIDLWNLMDT 267 (588)
Q Consensus 222 ~~~lS~~~L~~L~~~l~~L~e~K~~---R~~ki~~l~~~l~~LW~~L~~ 267 (588)
+.++.+.+|..|+..+..|+..-.. +...+.++..-+..+|..++-
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~ 813 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDE 813 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 5778889999999999988755433 334588999999999998663
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=92.64 E-value=29 Score=41.78 Aligned_cols=32 Identities=9% Similarity=0.348 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (588)
Q Consensus 162 ~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~ 193 (588)
..+..+...+..++..+..-..++.++...+.
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~ 289 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLE 289 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444444333333
No 9
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.32 E-value=33 Score=39.70 Aligned_cols=209 Identities=18% Similarity=0.257 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHH
Q 007822 35 EERDKMLLQIEKECLD------VYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAA 108 (588)
Q Consensus 35 ~er~~~l~~le~e~~~------v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~ 108 (588)
.+||....+|..+... -+...|....+.+......|..++..|..|-..+..++.+ ....+|.- ....
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-----~~pa~pse-~E~~ 84 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-----EPPAGPSE-VEQQ 84 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-----cccccchH-HHHH
Confidence 3555555555443211 1223455556777777888888889999988888887643 22333332 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 109 IAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEF 188 (588)
Q Consensus 109 l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l 188 (588)
+...++.|+++++.-..++......-+.| +.|.. --.++|.++...+..++....+|...+..+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~L-s~L~~---------------EqEerL~ELE~~le~~~e~~~D~~kLLe~l 148 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQL-SRLNQ---------------EQEERLAELEEELERLQEQQEDRQKLLEQL 148 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55667777666555444444332222222 22210 035667777777777777666665544433
Q ss_pred HHHHHHHHHHhCC--CcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007822 189 VSTVHDLCGVLGM--DFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMD 266 (588)
Q Consensus 189 ~~~I~~L~~~Lgi--d~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~ 266 (588)
-+....+...+.- .+...+.++... -..||+++++ |...++.-+-.+++-.+++.++..++..+=+.+.
T Consensus 149 qsdk~t~SRAlsQN~eLK~QL~Elq~~--------Fv~ltne~~e-lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le 219 (617)
T PF15070_consen 149 QSDKATASRALSQNRELKEQLAELQDA--------FVKLTNENME-LTSALQSEQHVKKELQKKLGELQEKLHNLKEKLE 219 (617)
T ss_pred cccchHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHhhhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222221 111111111100 1234444432 2222333333344444455566666666666666
Q ss_pred CCHHHHHh
Q 007822 267 TPSEERRL 274 (588)
Q Consensus 267 ~p~eEr~~ 274 (588)
.-.++-..
T Consensus 220 ~K~qE~~~ 227 (617)
T PF15070_consen 220 LKSQEAQS 227 (617)
T ss_pred hhhHHHHH
Confidence 65544333
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.57 E-value=63 Score=41.62 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 007822 38 DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLW 117 (588)
Q Consensus 38 ~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr 117 (588)
+..+.+|+.. |...-.+.......+...+..++.++..|...|+--.... .=-++++..+...++.++
T Consensus 635 e~~l~qLe~~----le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~--------~fA~ekle~L~~~ie~~K 702 (1822)
T KOG4674|consen 635 EKRLRQLENE----LESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL--------NLAKEKLENLEKNLELTK 702 (1822)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 5566666643 3334445555666677888888888888888887633211 012345666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 118 KQKEERVKEFSDVQSQIQ-------KICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVS 190 (588)
Q Consensus 118 ~~K~eR~~ef~~l~~qI~-------~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~ 190 (588)
.+...-...+..+...|. .+..+|.. +...+..+...+..|..|+.-+......+..
T Consensus 703 ~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~----------------a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~ 766 (1822)
T KOG4674|consen 703 EEVETLEERNKNLQSTISKQEQTVHTLSQELLS----------------ANEKLEKLEAELSNLKQEKLLLKETEERLSQ 766 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666643344444444333 33333332 5678889999999999999999999999998
Q ss_pred HHHHHHHHhC
Q 007822 191 TVHDLCGVLG 200 (588)
Q Consensus 191 ~I~~L~~~Lg 200 (588)
....|+....
T Consensus 767 e~~~l~~e~~ 776 (1822)
T KOG4674|consen 767 ELEKLSAEQE 776 (1822)
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 11
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.52 E-value=47 Score=40.02 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 107 AAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVL 186 (588)
Q Consensus 107 ~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~ 186 (588)
..|..++++|+.--.--+.++.-+..||+.+-+.=.+.. -...+=.|+..++.|+.+.+-=..+..
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t--------------leseiiqlkqkl~dm~~erdtdr~kte 325 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT--------------LESEIIQLKQKLDDMRSERDTDRHKTE 325 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC--------------hHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 447888999988777778888899999999866543311 122333455555555555555555555
Q ss_pred HHHHHHHHHHH
Q 007822 187 EFVSTVHDLCG 197 (588)
Q Consensus 187 ~l~~~I~~L~~ 197 (588)
++..++..|..
T Consensus 326 eL~eEnstLq~ 336 (1195)
T KOG4643|consen 326 ELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 12
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.42 E-value=37 Score=40.81 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHH
Q 007822 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAE 304 (588)
Q Consensus 225 lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e 304 (588)
.....+..|...+.+++.+++...+++..+..+..-+ .+|...|......+. +...+...+.
T Consensus 903 ~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi-------~~ek~~fgk~gt~yD-----------f~~~~p~~ar 964 (1174)
T KOG0933|consen 903 DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWI-------GDEKRLFGKKGTDYD-----------FESYDPHEAR 964 (1174)
T ss_pred cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccch-------hHHHHhhcCCCCccc-----------cccCCHhHHH
Confidence 3456678899999999999988888888777765422 277888877654321 2233445666
Q ss_pred HHHHHHHHHHH
Q 007822 305 VEVERLDQLKA 315 (588)
Q Consensus 305 ~Ev~RLe~lK~ 315 (588)
.++.+|+..+.
T Consensus 965 e~l~~Lq~k~~ 975 (1174)
T KOG0933|consen 965 EELKKLQEKKE 975 (1174)
T ss_pred HHHHHhhHHHH
Confidence 66666655443
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.51 E-value=42 Score=37.98 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Q 007822 34 DEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPAL 113 (588)
Q Consensus 34 e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~l 113 (588)
..+|.+++..+.. +++|..+-.........+.+.++.+..++..+-..+..-.. .+.+.-+.....+
T Consensus 149 ~~er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~-----------~i~~~~~~~~~~i 215 (562)
T PHA02562 149 APARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-----------NIEEQRKKNGENI 215 (562)
T ss_pred hHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHH
Confidence 3456666655543 34555554444444445555566666666655555432110 1111122223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 114 EQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 114 e~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
+.++.+.+.-..+...+..++..+-.+|.
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655553
No 14
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.41 E-value=59 Score=39.55 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 157 SDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLC 196 (588)
Q Consensus 157 ~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~ 196 (588)
.+...++++.++..+..+..++++=..++....+.|..+-
T Consensus 332 ~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 332 VDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777766666655554444444444444433
No 15
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.54 E-value=55 Score=38.11 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007822 298 DLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAH 337 (588)
Q Consensus 298 ~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~ 337 (588)
..+..++.=...|..++.......+.....++.+++..+.
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555566666666666666666666666666653
No 16
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.33 E-value=67 Score=38.81 Aligned_cols=50 Identities=30% Similarity=0.037 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhc
Q 007822 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLID 354 (588)
Q Consensus 297 ~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~ 354 (588)
...+..++.||.+++.-++..-++ |.++..+.+.| .++++-|-.-...||
T Consensus 905 ~l~~kkle~e~~~~~~e~~~~~k~-v~~l~~k~~wi-------~~ek~~fgk~gt~yD 954 (1174)
T KOG0933|consen 905 ELERKKLEHEVTKLESEKANARKE-VEKLLKKHEWI-------GDEKRLFGKKGTDYD 954 (1174)
T ss_pred cchHHHHHhHHHHhhhhHHHHHHH-HHHHHHhccch-------hHHHHhhcCCCCccc
Confidence 567899999999999998876554 44555544432 245555554444454
No 17
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.18 E-value=66 Score=37.47 Aligned_cols=243 Identities=12% Similarity=0.141 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007822 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (588)
Q Consensus 100 ~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~ 179 (588)
..+..++..+...+..+..+.+.-..++..+..++..+-..+........ ....-..+..+.+...+..++.++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~-----~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR-----SEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888887777777777777777766666655542210000 0001244556677788888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 007822 180 DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQ-ELATQL 258 (588)
Q Consensus 180 ~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~-~l~~~l 258 (588)
++.+.+..+.+ . .-++.|....|..+...+.....-+ +.+.+. .+....
T Consensus 280 e~~~~l~~l~~-------~---------------------~~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~ 329 (650)
T TIGR03185 280 ANRAQLRELAA-------D---------------------PLPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERD 329 (650)
T ss_pred HHHHHHHHHhc-------c---------------------cCCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 77775443321 1 1245667778888888777765333 333233 344666
Q ss_pred HHHHHhc---CCCHHHHHhHHHhhh-cccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 007822 259 IDLWNLM---DTPSEERRLFDHVTC-NISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEI---AFKRQGELEE 331 (588)
Q Consensus 259 ~~LW~~L---~~p~eEr~~F~~~~~-~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkel---i~k~r~eLee 331 (588)
..|+..+ ..+.+..+....... ...+...+...+-.++...+..+..-++.+..-....+..+ +.+...+|.+
T Consensus 330 ~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~ 409 (650)
T TIGR03185 330 KELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAE 409 (650)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666 555444433333221 11112222333445666666666655555442112223333 3455666777
Q ss_pred HHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007822 332 IFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVE 389 (588)
Q Consensus 332 lw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~ve 389 (588)
+=+++.-.++.. ... .-.+-++.++.+|..++..+.....-++...
T Consensus 410 l~~~l~~~~~~e-~i~-----------~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~ 455 (650)
T TIGR03185 410 VDKKISTIPSEE-QIA-----------QLLEELGEAQNELFRSEAEIEELLRQLETLK 455 (650)
T ss_pred HHHHHhcCCChH-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665443321 011 1123355556666666655555544444333
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.95 E-value=1.1e+02 Score=39.67 Aligned_cols=263 Identities=19% Similarity=0.231 Sum_probs=152.5
Q ss_pred HHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc--CCC---
Q 007822 20 LHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE--KSI--AGL--- 92 (588)
Q Consensus 20 l~eL~~IWdeIG~~e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge--~~~--~~~--- 92 (588)
|.-+..+=+.+--.+..-+.++....++-++-....|++..+......+.|..+..+.+.+-.-+-. +.. ..+
T Consensus 545 L~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~ 624 (1822)
T KOG4674|consen 545 LNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSA 624 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchh
Confidence 3344444444444444446666666666666677777777777777777777777776666322221 110 000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 007822 93 GIPEKTSGTIKEQLAAIAPALEQLWKQKEERVK----EFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQ 168 (588)
Q Consensus 93 ~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~----ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~ 168 (588)
+...+.++++..++..+...++.++.++.+++. +|..++.++..|...++-... ...++.++++-|+
T Consensus 625 ~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~---------~~~fA~ekle~L~ 695 (1822)
T KOG4674|consen 625 LDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKN---------ELNLAKEKLENLE 695 (1822)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHH
Confidence 112233344466777778888888887777664 566777777777777764321 3357889999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHH
Q 007822 169 AQLQELQKEKS---DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKK 245 (588)
Q Consensus 169 ~~L~~Lq~Ek~---~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~ 245 (588)
..+..+..+.. .|...+..++..-.+....+.- ....++.-+.+|...+..|..++.
T Consensus 696 ~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~--------------------eL~~a~~k~~~le~ev~~LKqE~~ 755 (1822)
T KOG4674|consen 696 KNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQ--------------------ELLSANEKLEKLEAELSNLKQEKL 755 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999988887 5555444444333333222221 112246778888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 246 QRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKR 325 (588)
Q Consensus 246 ~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~ 325 (588)
-+...-..|......|..... ... +....+.....+.++.+.-.+..+..=|..+
T Consensus 756 ll~~t~~rL~~e~~~l~~e~~-------~L~------------------~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL 810 (1822)
T KOG4674|consen 756 LLKETEERLSQELEKLSAEQE-------SLQ------------------LLLDNLQTQKNELEESEMATKDKCESRIKEL 810 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554444444444433211 000 1133455555555555555555555555555
Q ss_pred HHHHHHHHHHc
Q 007822 326 QGELEEIFARA 336 (588)
Q Consensus 326 r~eLeelw~~~ 336 (588)
..+|..+-..+
T Consensus 811 ~~el~~lk~kl 821 (1822)
T KOG4674|consen 811 ERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHH
Confidence 56666655554
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.82 E-value=1.2e+02 Score=39.89 Aligned_cols=325 Identities=19% Similarity=0.207 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHH---HHHHHHHHHHHH
Q 007822 39 KMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIK---EQLAAIAPALEQ 115 (588)
Q Consensus 39 ~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~---eql~~l~~~le~ 115 (588)
+....++.++ .....-+++.+..+..+...++....|+..|-..++...... ..-...+. .+++.|...++.
T Consensus 1041 k~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~----~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1041 KAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV----AQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556665 455667777888888888889888888888888888743221 00011122 223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 116 LWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (588)
Q Consensus 116 Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L 195 (588)
-+...+.--+++.++...+..+-.+|........ -...+...+=.++...-..|+.+-.....++..+......-
T Consensus 1116 er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~-----~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~ 1190 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEELKEELEEQGGTTA-----AQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADS 1190 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333345566666666666665554321000 00012333344555555566666666666666666666665
Q ss_pred HHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhH
Q 007822 196 CGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLF 275 (588)
Q Consensus 196 ~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F 275 (588)
...|+...++. ...|-.+. ....--..-++.|...+..+...+.....++..+-..+.+|=.+++.-...+..|
T Consensus 1191 ~~el~~qle~l-~~~k~~le-----kek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l 1264 (1930)
T KOG0161|consen 1191 LAELQEQLEQL-QKDKAKLE-----KEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDL 1264 (1930)
T ss_pred HHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555322211 00010000 0000001223445555555656666666566666666666666666655555554
Q ss_pred HHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcC
Q 007822 276 DHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDS 355 (588)
Q Consensus 276 ~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s 355 (588)
......+.. ..+.=...++..+..+.-+...+.. ....|+++=+.+.-....+.+......-.
T Consensus 1265 ~~q~~~l~~-------E~~~l~~~lee~e~~~~~~~r~~~~--------~~~qle~~k~qle~e~r~k~~l~~~l~~l-- 1327 (1930)
T KOG0161|consen 1265 TAKRSRLQN-------ENEELSRQLEEAEAKLSALSRDKQA--------LESQLEELKRQLEEETREKSALENALRQL-- 1327 (1930)
T ss_pred HHHHHHhhh-------hHHHHhhHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 443322111 0111122333333344333333333 33344444332222222222221111111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHH
Q 007822 356 GNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEE 397 (588)
Q Consensus 356 ~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e 397 (588)
..+-..|.+.+|.+.....+....-+..-..+.+|..-.++
T Consensus 1328 -~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~ 1368 (1930)
T KOG0161|consen 1328 -EHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEE 1368 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345666666666666666665555555666666554443
No 20
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.26 E-value=95 Score=38.35 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 47 ECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSA 83 (588)
Q Consensus 47 e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~e 83 (588)
+=...+.+++.+++..+..+...+.+.+.++..+-..
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677899999999999999999988888888433
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.27 E-value=16 Score=41.27 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007822 228 DTLARLAKTVLALKEDKKQ 246 (588)
Q Consensus 228 ~~L~~L~~~l~~L~e~K~~ 246 (588)
..++.+...+..+..++..
T Consensus 386 ~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 386 DELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666543
No 22
>PRK11637 AmiB activator; Provisional
Probab=84.96 E-value=66 Score=35.39 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 101 tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
.+.++++.+...++.+.++..+-..+...+..++..+-..|.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~ 85 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS 85 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666555555555555444455555555555444443
No 23
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.88 E-value=40 Score=38.55 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (588)
Q Consensus 52 ~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~ 131 (588)
|+..+.+...........+.++..++....+.|...|. .+..+...+..+...+..--..+.++.
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~---------------~L~ele~RL~~l~~LkrKyg~s~e~l~ 328 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPE---------------RLNEIEERLAQIKRLKRKYGASVEEVL 328 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666666666777777777777777776643332 345555555555554444445666666
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhCCC
Q 007822 132 SQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS--------DRLHKVLEFVSTVHDLCGVLGMD 202 (588)
Q Consensus 132 ~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~--------~R~~kv~~l~~~I~~L~~~Lgid 202 (588)
.....+-.+|..-.. +...++.++..+..++++.. .|.+....+...|...+..||++
T Consensus 329 ~~~~~l~~eL~~l~~-------------~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 329 EYAEKIKEELDQLDD-------------SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 777777666664221 23345555555555554443 45666778889999999999986
No 24
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=50 Score=38.67 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 59 AAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKIC 138 (588)
Q Consensus 59 ~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~ 138 (588)
.+..+.+|.+.+..+...+..|..-|++--. +-++-++ .++.+++..+-++-++..++.+|+.+-
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~--------~~tt~kt-------~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV--------DITTQKT-------EIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee--------ccchHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777766665332 2234444 444455555555555555555555554
Q ss_pred hHh
Q 007822 139 GEI 141 (588)
Q Consensus 139 ~eL 141 (588)
..|
T Consensus 500 ~kl 502 (1118)
T KOG1029|consen 500 EKL 502 (1118)
T ss_pred HHH
Confidence 443
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.89 E-value=1.5e+02 Score=36.58 Aligned_cols=98 Identities=22% Similarity=0.221 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHH
Q 007822 226 SNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEV 305 (588)
Q Consensus 226 S~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~ 305 (588)
|+.++.+++..+..|+.+...-..++..|...+..+=.++.--..+-..+......+.. -..++...++.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~----------~~~~~k~~~e~ 1002 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK----------ELRDLKSELEN 1002 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667777777777766666666666666666666555554433333334333332221 12344445555
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 007822 306 EVERLDQLKASR--MKEIAFKRQGELEEIF 333 (588)
Q Consensus 306 Ev~RLe~lK~~~--mkeli~k~r~eLeelw 333 (588)
.-+...+||+.+ |+..+++.+.+|.++=
T Consensus 1003 i~k~~~~lk~~rId~~~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 1003 IKKSENELKAERIDIENKLEAINGELNEIE 1032 (1293)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 555555555544 4445556666665543
No 26
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.49 E-value=2e+02 Score=37.79 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (588)
Q Consensus 53 ~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~ 132 (588)
...+++....++.+...-..++.++..++.+++.-..... ..+.....+-.++..+...+.++.....+-..+-..+..
T Consensus 1195 ~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~-~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1195 QEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKK-DLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3477778888888888888899999999998886433210 011222233345555555555555443333333333333
Q ss_pred HHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 007822 133 QIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDF 203 (588)
Q Consensus 133 qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~ 203 (588)
+...+...+........ ......---..+|+.++.++..-...+....+.+..+...+..|-..|..+.
T Consensus 1274 E~~~l~~~lee~e~~~~--~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLS--ALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred hHHHHhhHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222110000 0000000124567777888888888888888888888888888888887653
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.60 E-value=1.5e+02 Score=35.86 Aligned_cols=301 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHH
Q 007822 160 TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLA 239 (588)
Q Consensus 160 S~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~ 239 (588)
+..++.+|+..|..++.+..++-+++..+++.++.+-+..+ .|......+...+....+ .+.....++..-...+..
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~-~~~~~~~~l~~e~~~~k~--e~~~v~~s~~~k~~~Le~ 752 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRN-AFKREHEKLKRELNTIKG--EKSRVQESLEPKGKELEE 752 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 240 LKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMK 319 (588)
Q Consensus 240 L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mk 319 (588)
+......-......+-+.+..=-. ...+.++++.....+-.|. .++...-......++ ++..|...=-
T Consensus 753 i~~~l~~~~~~~~~~e~el~sel~-sqLt~ee~e~l~kLn~eI~----------~l~~kl~~~~~er~~-~~~rk~~le~ 820 (1200)
T KOG0964|consen 753 IKTSLHKLESQSNYFESELGSELF-SQLTPEELERLSKLNKEIN----------KLSVKLRALREERID-IETRKTALEA 820 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHH-hhcCHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHH
Q 007822 320 EIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAK-------EEAHSRKEILDKVEKWM 392 (588)
Q Consensus 320 eli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lk-------e~~~~~k~Il~~vekw~ 392 (588)
.+..++...+.++ ...+....+.....-.....+.. +.+...|+.-+..++ ..-+.-++|....++|.
T Consensus 821 ~l~~kL~~r~~~l--~~ei~~~~d~~~~~el~~~~~el---~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~ 895 (1200)
T KOG0964|consen 821 NLNTKLYKRVNEL--EQEIGDLNDSSRRSELELEKSEL---ESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK 895 (1200)
T ss_pred HHHHHHHhhhhHH--HHHhhhcccccchhhhhHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHcCCchhhhccccchhhchHHHHHHHH----------------hhh--hHHHHHHHHHHHHHHHHHcCC
Q 007822 393 SACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARIL----------------VNK--IPALVETLVAKTRAWEEDHGI 454 (588)
Q Consensus 393 ~l~~ee~~Le~~~~D~nR~~~~RG~~~~LlreEK~Rk~----------------i~K--lPkl~~~L~~~l~~wE~e~g~ 454 (588)
.+..+..-..++.+---+.. +|-+.+.=+|+|=.-+. ++. |-+....+-..+..|..-+.+
T Consensus 896 ~lek~~~~~~~~dKe~Ek~~-~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKk 974 (1200)
T KOG0964|consen 896 NLEKEKKDNINFDKELEKLV-RRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKK 974 (1200)
T ss_pred HHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHH
Q ss_pred ceEEcCccHHHHHHHHHHHHHHHHHHHHHhHHhhhhhh
Q 007822 455 SFTYDGVPLLAMLDEYAMLRQEREEEKRRMRESKKFHE 492 (588)
Q Consensus 455 ~Fl~dG~~ll~~l~e~~~~r~eKE~ek~~~R~~kk~~~ 492 (588)
.| ++|...-.+||.-++|+-++++.++
T Consensus 975 Al-----------dQf~nfseQre~L~~R~eELd~s~~ 1001 (1200)
T KOG0964|consen 975 AL-----------DQFVNFSEQRESLKKRQEELDRSKD 1001 (1200)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHhccchh
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.03 E-value=92 Score=33.01 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---
Q 007822 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDR--- 181 (588)
Q Consensus 105 ql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R--- 181 (588)
.+..++..|..+...-+.+.+++.+++.+...+-..+.. ...+..++...|..+++.....
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~----------------~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE----------------LEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555555555555555555555555555555444431 2345556666777777666533
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCccc
Q 007822 182 -LHKVLEFVSTVHDLCGVLGMDFFS 205 (588)
Q Consensus 182 -~~kv~~l~~~I~~L~~~Lgid~~~ 205 (588)
...|..+...+..|....|+.+..
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 345778888888888888876544
No 29
>PRK11637 AmiB activator; Provisional
Probab=78.69 E-value=1.1e+02 Score=33.67 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 230 LARLAKTVLALKEDKKQRLHKLQELAT 256 (588)
Q Consensus 230 L~~L~~~l~~L~e~K~~R~~ki~~l~~ 256 (588)
+..+......|+..+.++...+..|..
T Consensus 200 ~~e~~~~k~~L~~~k~e~~~~l~~L~~ 226 (428)
T PRK11637 200 LYEQQAQQQKLEQARNERKKTLTGLES 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454444444444444433
No 30
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.07 E-value=1e+02 Score=32.35 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (588)
Q Consensus 55 ~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI 134 (588)
-+++.+..|..+.+.+....++-..+-....+-. ....++.++.+.|...+.+++.++.+-...+..+...+
T Consensus 21 ~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~--------e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 21 EIEELKEKRDELRKEASELAEKRDELNAKVRELR--------EKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544443333332222211 12245667777777778888777777777777777777
Q ss_pred HHHHhHhcCCCCCC-CC----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 135 QKICGEIAGNLSLG-DQ----------APSVDESDLTLKKLDEYQAQLQELQKEKSDRLH 183 (588)
Q Consensus 135 ~~l~~eL~~~~~~~-~~----------~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~ 183 (588)
..+...+++....+ +. ....-..+||++.=..+-..|..|++++..+..
T Consensus 93 ~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k 152 (294)
T COG1340 93 RELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655331000 00 000012366777767777777777777766653
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.82 E-value=2.2e+02 Score=36.19 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHH
Q 007822 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD-LCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLA 239 (588)
Q Consensus 161 ~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~-L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~ 239 (588)
..........+.-+++++..+...+..+...... +...+| +|... | .+ ...+..+...+..
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~-----~-----------~l-~~~~~~~~~el~~ 588 (1311)
T TIGR00606 527 LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YFPNK-----K-----------QL-EDWLHSKSKEINQ 588 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCc-----H-----------HH-HHHHHHHHHHHHH
Confidence 3344455666777777777777766666555432 333344 33110 1 11 3445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHH----
Q 007822 240 LKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKA---- 315 (588)
Q Consensus 240 L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~---- 315 (588)
+++......+.+..+-.++..+=..+.--..+.+.+..... +..++..| .+.|..++.++.....-..
T Consensus 589 ~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-------~~~~~~~~-~~~L~~~~~~l~~~~~~~~~~~~ 660 (1311)
T TIGR00606 589 TRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-------DVCGSQDE-ESDLERLKEEIEKSSKQRAMLAG 660 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCchhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444433444444443333333333333332322211 00111222 3356666665555441111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007822 316 --SRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMS 393 (588)
Q Consensus 316 --~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~ 393 (588)
..++.+|.....+=...|..|+-+.........|..-+.+.....-+.++..+..+..+++.+..-..+-..|+.|..
T Consensus 661 ~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~ 740 (1311)
T TIGR00606 661 ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIID 740 (1311)
T ss_pred HHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 122333322211112256666544333222223333233221112345667777777777777777777777777766
Q ss_pred Hh
Q 007822 394 AC 395 (588)
Q Consensus 394 l~ 395 (588)
+.
T Consensus 741 l~ 742 (1311)
T TIGR00606 741 LK 742 (1311)
T ss_pred HH
Confidence 65
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=76.49 E-value=2.2e+02 Score=35.93 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Q 007822 157 SDLTLKKLDEYQAQLQELQKEK---SDRLHKVLEFVSTVHDLCGVLG 200 (588)
Q Consensus 157 ~dlS~~~L~~l~~~L~~Lq~Ek---~~R~~kv~~l~~~I~~L~~~Lg 200 (588)
.++....|..|+..+..|+++. ..+...|.++..-+...|..+.
T Consensus 766 ~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 766 KGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3557788999999999888776 5677888888888888887654
No 33
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=74.93 E-value=1.4e+02 Score=33.01 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCC-CHHHHHHHHHHHHH
Q 007822 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSI-SNDTLARLAKTVLA 239 (588)
Q Consensus 161 ~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~l-S~~~L~~L~~~l~~ 239 (588)
...+..|+..|..|..-+..-...+...+..|..-... |.. .++.. .+.+=..+..-...
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~----~k~---------------~s~~~~~~~~R~~~~~~k~~ 210 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKK----VKS---------------ASTNASGDSNRAYMESGKKK 210 (424)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------------hhccccccchhHHHHHHHHH
Confidence 56777777777777777766666444333333322111 111 01111 23445556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 240 LKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMK 319 (588)
Q Consensus 240 L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mk 319 (588)
|...-..-..++.+|...|..|=. ...+ .++. .+..-++.+..++.++..-= +.|+
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRk----------DV~~--RgvR-----------p~~~qle~v~kdi~~a~~~L-~~m~ 266 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRK----------DVVQ--RGVR-----------PSPKQLETVAKDISRASKEL-KKMK 266 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--H----------------HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--cCCc-----------CCHHHHHHHHHHHHHHHHHH-HHHH
Confidence 777777777777777777776643 2322 2333 23677888888888776543 4589
Q ss_pred HHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007822 320 EIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKW 391 (588)
Q Consensus 320 eli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw 391 (588)
.+|...+--|..+|..- .+.+ +.-.+.|...|.-+..|++-+..-..+|..|+++
T Consensus 267 ~~i~~~kp~WkKiWE~E---------L~~V--------~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 267 EYIKTEKPIWKKIWESE---------LQKV--------CEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 2222 1225678888888999999999999999999986
No 34
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.96 E-value=1.5e+02 Score=33.00 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGE-KSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (588)
Q Consensus 55 ~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge-~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~q 133 (588)
.+.+.+........++...++.+..|...++. ++... ........++..++..+..++..++..+.+..-.+.+++.+
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL-AGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC-cccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 34445555555566666667777777777775 22211 01122345788999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007822 134 IQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (588)
Q Consensus 134 I~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lg 200 (588)
|..+-..+............ .... ...-+..+...+..++.+...-..++..+...+..+-..++
T Consensus 284 i~~l~~~l~~~~~~~~~~~~-~~~~-~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNGGPE-RGEI-ANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHhhccccccCcc-cccc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877543211000000 0111 12224566666777776666666666666666666655444
No 35
>PLN03188 kinesin-12 family protein; Provisional
Probab=73.46 E-value=2.5e+02 Score=35.20 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 007822 230 LARLAKTVLALK-----EDKKQRLHKLQELATQLIDL 261 (588)
Q Consensus 230 L~~L~~~l~~L~-----e~K~~R~~ki~~l~~~l~~L 261 (588)
|.+++.++..++ .+|.-.++.|++|+.+|+-+
T Consensus 969 ~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~ 1005 (1320)
T PLN03188 969 LKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYY 1005 (1320)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh
Confidence 334444444432 45556667788888877766
No 36
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=72.01 E-value=1.7e+02 Score=32.61 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCC
Q 007822 299 LIEQAEVEVERLDQLKASR---MKEIAFKRQGELEEIFARAHIE 339 (588)
Q Consensus 299 ~I~~~e~Ev~RLe~lK~~~---mkeli~k~r~eLeelw~~~~~~ 339 (588)
-++.++.|+..|.-+-... ...+|.+.+-+++++-..|.+-
T Consensus 534 E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~ 577 (622)
T COG5185 534 EIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRK 577 (622)
T ss_pred HHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 4677777777776554433 3456777777777777666543
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.68 E-value=2e+02 Score=34.68 Aligned_cols=147 Identities=21% Similarity=0.268 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcC--CCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 64 AQLLQALSDAKIELASLLSALGEKSIA--GLGIPEKTSGTIKEQLAAIAPALE---QLWKQKEERVKEFSDVQSQIQKIC 138 (588)
Q Consensus 64 ~~L~q~I~~~~~El~~L~~eLge~~~~--~~~~~~~~~~tL~eql~~l~~~le---~Lr~~K~eR~~ef~~l~~qI~~l~ 138 (588)
.-+.++++.+-.-++.|..++..+.+. + .+..+.||.++-..++.+++ .|.-.-++|-.++++|+.....=-
T Consensus 899 ~~lr~sleq~nstl~ll~~~~~~~Ey~~~~---~ps~~~pl~~RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkq 975 (1243)
T KOG0971|consen 899 ECLRQSLEQLNSTLNLLATAMQEGEYDAER---PPSKPPPLELRAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQ 975 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccc---CCCCCCcHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhH
Confidence 345556666666667777777777765 4 35557889888888877755 466667788888887776544332
Q ss_pred hHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCC
Q 007822 139 GEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDST 218 (588)
Q Consensus 139 ~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~ 218 (588)
.++.. -.=+++-....|..+.+....|++++.+-+++...+...=...|
T Consensus 976 eelSe----------------~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~ef--------------- 1024 (1243)
T KOG0971|consen 976 EELSE----------------AQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEF--------------- 1024 (1243)
T ss_pred HHHHH----------------HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 22221 12345566778888888899999988877776665544433332
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 219 GVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQ 252 (588)
Q Consensus 219 ~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~ 252 (588)
.++|+.|+..++.|+.+|..-.++++
T Consensus 1025 --------eetmdaLq~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 1025 --------EETMDALQADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred --------HHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 47899999999999999876666554
No 38
>PRK09039 hypothetical protein; Validated
Probab=71.63 E-value=1.5e+02 Score=31.81 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 007822 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK 178 (588)
Q Consensus 99 ~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek 178 (588)
..++..++..+...|...+....+-..++..|..+|..|-..|+.-..-. +-+..+..+.+.+++.|+.+.
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L---------~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL---------DASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999888888888888888877766432111 224555566667777766666
Q ss_pred HHHHH----HHHHHHHHHH-HHHHHhCCCcccccc-c--ccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHH
Q 007822 179 SDRLH----KVLEFVSTVH-DLCGVLGMDFFSTVT-E--VHPSLNDSTGVQSKSISNDTLARLAKTVLALKE 242 (588)
Q Consensus 179 ~~R~~----kv~~l~~~I~-~L~~~Lgid~~~~v~-e--vhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e 242 (588)
..-+. .+..+.+.+. .|...+|-...-.+. + +-++ .-.+...+..|++.....|......|..
T Consensus 182 ~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~-~vlF~~gsa~L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 182 NVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFVFQS-EVLFPTGSAELNPEGQAEIAKLAAALIE 252 (343)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEEecC-CceeCCCCcccCHHHHHHHHHHHHHHHH
Confidence 55553 3334444442 223455532111110 0 0011 0012234567777777666665555433
No 39
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.39 E-value=1.2e+02 Score=30.68 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 51 VYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (588)
Q Consensus 51 v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l 130 (588)
=++.++.+..+.+.+|++.++.++.+-. .+..+....+.|..+|...+.++..+
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~--------------------------~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEK--------------------------CLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888887666532 34566777888888888888888888
Q ss_pred HHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC
Q 007822 131 QSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV-LGMD 202 (588)
Q Consensus 131 ~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~-Lgid 202 (588)
...|..|=+.|.. +....+..+..+..+..|+..-.. .|..+-.. +|++
T Consensus 59 ~~DIn~lE~iIkq----------------a~~er~~~~~~i~r~~eey~~Lk~-------~in~~R~e~lgl~ 108 (230)
T PF10146_consen 59 NQDINTLENIIKQ----------------AESERNKRQEKIQRLYEEYKPLKD-------EINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHcCCC
Confidence 8888877555542 233444455555666555554444 44444444 7875
No 40
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.77 E-value=56 Score=32.68 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007822 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEER 272 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr 272 (588)
++.|..|.....+|+++...+.-++.+|..+..+|-..+..|++++
T Consensus 169 ~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 4678888899999999988888889999999999988888887763
No 41
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=70.52 E-value=65 Score=30.52 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhHHHhhhcc-----------------cccccC-----CCCCCCChHHHHHHHHHHHHH
Q 007822 252 QELATQLIDLWNLMDTPSEERRLFDHVTCNI-----------------SAYVDG-----VTVPGALALDLIEQAEVEVER 309 (588)
Q Consensus 252 ~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i-----------------~~s~~e-----~~~~~~lS~~~I~~~e~Ev~R 309 (588)
+..+.+|.+||+.|++|--.|..|--.+.|= +.+... ..++...-..++.++..|-+-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~~ 82 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRREREM 82 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHHH
Confidence 4567899999999999998888774433321 000000 011222224466666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCC
Q 007822 310 LDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSG 356 (588)
Q Consensus 310 Le~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~ 356 (588)
|-..-..++ ...|.++++-+.+++.+.++...++...+=++
T Consensus 83 L~k~m~~rl------s~eere~ly~kWgI~l~sK~RrlQL~~~LWt~ 123 (161)
T PF11995_consen 83 LAKQMQKRL------SREEREELYKKWGIPLDSKQRRLQLANRLWTD 123 (161)
T ss_pred HHHHHHHhC------CHHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Confidence 533322222 24678899999999999877666666555443
No 42
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.46 E-value=1.5e+02 Score=31.41 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CcCCC--CCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 007822 61 KSRAQLLQALSDAKIELASLLSALGEK--SIAGL--GIPEKTSGTIKEQLAAIAPA--LEQLWKQKEERVKEFSDVQSQI 134 (588)
Q Consensus 61 ~~r~~L~q~I~~~~~El~~L~~eLge~--~~~~~--~~~~~~~~tL~eql~~l~~~--le~Lr~~K~eR~~ef~~l~~qI 134 (588)
-....|...|.+.+.-+..+-.++... |...- ...+..-..+..|+..++.. ++.-..-|+=|++-+..++..+
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L 154 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGL 154 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777666652 21100 01223334566777777665 5566667788888888888888
Q ss_pred HHHHhHhcC
Q 007822 135 QKICGEIAG 143 (588)
Q Consensus 135 ~~l~~eL~~ 143 (588)
..-...|-.
T Consensus 155 ~~~~~~L~~ 163 (325)
T PF08317_consen 155 EENLELLQE 163 (325)
T ss_pred HHHHHHHHH
Confidence 877776653
No 43
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.44 E-value=2e+02 Score=32.87 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHH
Q 007822 295 LALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKA 374 (588)
Q Consensus 295 lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~l 374 (588)
+....++.++..+..++.+++.+-.. +.+....++++=..+ ..+ ...++-++.++.++..+
T Consensus 298 ~dp~~L~ele~RL~~l~~LkrKyg~s-~e~l~~~~~~l~~eL--------------~~l----~~~~~~le~L~~el~~l 358 (563)
T TIGR00634 298 FDPERLNEIEERLAQIKRLKRKYGAS-VEEVLEYAEKIKEEL--------------DQL----DDSDESLEALEEEVDKL 358 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH--------------HHH----hCCHHHHHHHHHHHHHH
Confidence 44667888888888888888765322 112222222211111 111 23355677788888888
Q ss_pred HHHHHhhhHHHHHH
Q 007822 375 KEEAHSRKEILDKV 388 (588)
Q Consensus 375 ke~~~~~k~Il~~v 388 (588)
++.|.....-+...
T Consensus 359 ~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 359 EEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776654444433
No 44
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=69.31 E-value=2.9e+02 Score=34.15 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 163 KLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV 198 (588)
Q Consensus 163 ~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~ 198 (588)
.+..++..+..++.+...-...+..+...+..+-..
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e 834 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444444444444333
No 45
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=68.23 E-value=1.4e+02 Score=30.21 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007822 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (588)
Q Consensus 159 lS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lg 200 (588)
+-.--+++|...-..|..|...|...=.+++..|.++...|.
T Consensus 198 f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ 239 (247)
T PF06705_consen 198 FQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQ 239 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344445566666667777777777776667777766666553
No 46
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=68.01 E-value=1.4e+02 Score=30.19 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHc
Q 007822 299 LIEQAEVEVERLDQLKASRMKEIAFK-------RQGELEEIFARA 336 (588)
Q Consensus 299 ~I~~~e~Ev~RLe~lK~~~mkeli~k-------~r~eLeelw~~~ 336 (588)
.-+....||.|.+.-|..-|+..+.. ...++.++|...
T Consensus 185 Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f 229 (234)
T cd07664 185 ISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567889999988888776666544 567889999865
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=65.15 E-value=3.4e+02 Score=33.43 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 007822 300 IEQAEVEVERLD 311 (588)
Q Consensus 300 I~~~e~Ev~RLe 311 (588)
+..+..++.+++
T Consensus 910 ~~~l~~~l~~l~ 921 (1179)
T TIGR02168 910 RSELRRELEELR 921 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 48
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.54 E-value=2.2e+02 Score=31.18 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhh
Q 007822 228 DTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVT 279 (588)
Q Consensus 228 ~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~ 279 (588)
.||+.|+-..-+|+.--.+- --.-...||.+|+-=..|.+..+...
T Consensus 179 ~~leQLRre~V~lentlEQE------qEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQE------QEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred hhHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666655544443322222 22234567777776555555554443
No 49
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=63.01 E-value=37 Score=40.11 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (588)
Q Consensus 159 lS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L 195 (588)
.+.++++.|+..+..|+.+...=...+..+-..|..+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999998877777666666666654
No 50
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.18 E-value=2.1e+02 Score=31.01 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (588)
Q Consensus 52 ~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~ 131 (588)
|+.-++++...+..+-..+.+....|..|-.+++-.-- -+..+.+.|..+++.+..++.....++.+++
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~le-----------kI~sREk~iN~qle~l~~eYr~~~~~ls~~~ 286 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLE-----------KIESREKYINNQLEPLIQEYRSAQDELSEVQ 286 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55567777777777777777777777777766664221 1122344555555555555555555555555
Q ss_pred HHHHHHH
Q 007822 132 SQIQKIC 138 (588)
Q Consensus 132 ~qI~~l~ 138 (588)
.+.....
T Consensus 287 ~~y~~~s 293 (359)
T PF10498_consen 287 EKYKQAS 293 (359)
T ss_pred HHHHHHh
Confidence 5544443
No 51
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=60.65 E-value=88 Score=28.78 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccccccccCCCCCCCCCccCCCCHHHHHH
Q 007822 158 DLTLKKLDEYQAQL----QELQKEKSDRLHKVLEFVSTVHDLCGVLGMD-FFSTVTEVHPSLNDSTGVQSKSISNDTLAR 232 (588)
Q Consensus 158 dlS~~~L~~l~~~L----~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid-~~~~v~evhpsl~d~~~~~~~~lS~~~L~~ 232 (588)
|+|.++|+.++.+. +-.|.|......|+..+.+.....-..+..+ ....+ .-+|+|.+-- .-++|++++|..
T Consensus 9 disa~~L~glRtqc~~s~eltqqeIr~lE~KLvK~fSkQL~~K~k~~~~~~~~~l-~~yP~l~~WL--~vVgl~~~~i~~ 85 (129)
T PF13543_consen 9 DISAEQLEGLRTQCATSSELTQQEIRTLEGKLVKYFSKQLQCKAKVAERERAAEL-NSYPSLRQWL--RVVGLRPESIQA 85 (129)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCchhc-ccCCcHHHHh--hhcCCCHHHHHH
Confidence 45666666666654 3345555566666666666554444444322 11112 1346654311 247899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhh
Q 007822 233 LAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTC 280 (588)
Q Consensus 233 L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~ 280 (588)
+-..+..|.........++.+ +-+.++...||+..|.....
T Consensus 86 i~~~~~tLe~Llemsd~el~~-------~l~~~g~~~EE~rRL~~Al~ 126 (129)
T PF13543_consen 86 ILSKVLTLEALLEMSDEELKE-------ILNRCGAREEECRRLCRALS 126 (129)
T ss_pred HHHhhcCHHHHHhCCHHHHHH-------HHHHhCCCHHHHHHHHHHHH
Confidence 977777777766655555443 44447888888888877653
No 52
>PRK10869 recombination and repair protein; Provisional
Probab=60.29 E-value=3.1e+02 Score=31.41 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 104 EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (588)
Q Consensus 104 eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l 137 (588)
+.+..+...+++++....++.+++.-+..|+..|
T Consensus 164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777776
No 53
>COG5293 Predicted ATPase [General function prediction only]
Probab=58.60 E-value=2.9e+02 Score=30.82 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=34.7
Q ss_pred HHHHHHHHHhHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 19 LLHKLQEIWDEVGEN-DEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLS 82 (588)
Q Consensus 19 ll~eL~~IWdeIG~~-e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~ 82 (588)
.+.+.+.++++||.- +.+-.+ .+ .|+..+|+.++++ ..+-+..+|+..+..|..+-.
T Consensus 299 ~pd~i~~~ye~vg~~fpg~Vkk---~~-e~v~~F~r~~~e~---R~~yl~~ei~~i~~dLk~~n~ 356 (591)
T COG5293 299 CPDEIQVLYEEVGVLFPGQVKK---DF-EHVIAFNRAITEE---RHDYLQEEIAEIEGDLKEVNA 356 (591)
T ss_pred ChHHHHHHHHHhhhcChHHHHH---hH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999885 222222 22 3567889988874 344455555555555444433
No 54
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.89 E-value=2.6e+02 Score=29.76 Aligned_cols=261 Identities=19% Similarity=0.225 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (588)
Q Consensus 50 ~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~ 129 (588)
+-|+.|+++.......+.....+.. .-+..-|.+.++ +.....+|-+.+...+.+...|..+-..-.+.+.+
T Consensus 26 DqyKlMAEqLqer~q~LKkk~~el~----~~~~~~~d~~~~----~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 26 DQYKLMAEQLQERYQALKKKYRELI----QEAAGFGDPSIP----PEKENKNLAQLLSESREQNKKLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hhhcccCCccCC----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666555555555332 223444445554 34456677666666555555555554444445555
Q ss_pred HHHHHHHHHhHhcCCCC---CCCCCCCCCCC-CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007822 130 VQSQIQKICGEIAGNLS---LGDQAPSVDES-DL------TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL 199 (588)
Q Consensus 130 l~~qI~~l~~eL~~~~~---~~~~~~~v~~~-dl------S~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~L 199 (588)
++..|.-+...+..... .+.......+. ++ ...+...|+..++.+-.||.+=...-..|...++.|-.+|
T Consensus 98 ~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 98 AQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444443332110 00000000110 10 2233334444444445566666666666777777776666
Q ss_pred CCCcccccccccCCCCCCCCCccCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---hcC-----
Q 007822 200 GMDFFSTVTEVHPSLNDSTGVQSKSISNDTL----ARLAKTVLALKEDKKQRLHKLQELATQLID-LWN---LMD----- 266 (588)
Q Consensus 200 gid~~~~v~evhpsl~d~~~~~~~~lS~~~L----~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~-LW~---~L~----- 266 (588)
..- + . +..+.-+.-+.| ..|+..+..+++++.--...+..+..-+.. -=+ +++
T Consensus 178 n~~----L-------~---g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~ 243 (319)
T PF09789_consen 178 NYI----L-------N---GDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGIIKLGNSASS 243 (319)
T ss_pred HHH----h-------C---CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCC
Confidence 421 1 0 001111111111 136666666666666555555555554442 000 122
Q ss_pred -----CCHHHHHhHHHhhh---cccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 267 -----TPSEERRLFDHVTC---NISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFA 334 (588)
Q Consensus 267 -----~p~eEr~~F~~~~~---~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~ 334 (588)
++..+.+.|..... .+.++...+.+=.+|+...++.+..----|...|..| .+.-..-.||+.=|.
T Consensus 244 ~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hqr~tN--kILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 244 NLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQRKTN--KILGNRVAELEKKLK 317 (319)
T ss_pred cccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 12334344332211 2233333344334445555555555555555555554 333344455555443
No 55
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=56.71 E-value=2.7e+02 Score=29.61 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCC
Q 007822 75 IELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSV 154 (588)
Q Consensus 75 ~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v 154 (588)
.+-..+....|..+. +..-..+|...+..++..++.-..-=..-...|.....-+.-||.....-....+. +..
T Consensus 107 ~ed~~~R~k~G~~~~-----S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs-~~~ 180 (337)
T cd09234 107 LQEKEFQEAVGKRGS-----SIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPS-PSL 180 (337)
T ss_pred hHHHHHHHHcCCCCC-----chhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCC-ccc
Confidence 334445556665321 22235678888999999888877754444444444444444444321100001110 011
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 155 DESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD 194 (588)
Q Consensus 155 ~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~ 194 (588)
.+.+.....+..|+..+..++.-+.+|...+.++...++.
T Consensus 181 ~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~ 220 (337)
T cd09234 181 LDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHE 220 (337)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1112245678889999999999999999988888776553
No 56
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=55.19 E-value=3.3e+02 Score=30.11 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 007822 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (588)
Q Consensus 161 ~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L 240 (588)
...|..|+..|..|+.-++.-...+...+..|..=...+. .. ++. .+ .+.+=..+..-..+|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k----~~------~~~-----~~---~~s~R~y~e~~k~kL 215 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFK----SS------SLS-----AS---GSSNRAYVESSKKKL 215 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh------hhc-----cC---CCcchHHHHHhHHHH
Confidence 4778888888888888888888755555554444333322 10 000 00 122333444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE 320 (588)
Q Consensus 241 ~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mke 320 (588)
.++-..-+.++++|..-|..|-. .. +..++.|+ ..-++.+..++..+..- -..|.+
T Consensus 216 ~~~Sd~lltkVDDLQD~vE~LRk----------DV--~~RgVRp~-----------~~qLe~v~kdi~~a~ke-L~~m~~ 271 (426)
T smart00806 216 SEDSDSLLTKVDDLQDIIEALRK----------DV--AQRGVRPS-----------KKQLETVQKELETARKE-LKKMEE 271 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HH--HHcCCCCC-----------HHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55555555566666555554432 22 23444443 55666666666666543 234788
Q ss_pred HHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007822 321 IAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKW 391 (588)
Q Consensus 321 li~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw 391 (588)
+|..-+--|..+|..= -+.+ +.--+.|...|.-+..|++-...-.+.|.+|+.+
T Consensus 272 ~i~~eKP~WkKiWE~E---------L~~V--------cEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 272 YIDIEKPIWKKIWEAE---------LDKV--------CEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHhhcChHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888731 1111 1124557778888888999999999999999987
No 57
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=55.09 E-value=2.1e+02 Score=31.84 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 007822 237 VLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKAS 316 (588)
Q Consensus 237 l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~ 316 (588)
++.-..+|...+-++..+...-..|=.+--+-..++..|.+..-.+ ..++.+-+.||+||+.+|-.
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm--------------dk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM--------------DKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHhhhhHHHHHHHHHHHHH
Confidence 3333344444444556666666666666666677778777765332 56888999999999999875
Q ss_pred H
Q 007822 317 R 317 (588)
Q Consensus 317 ~ 317 (588)
.
T Consensus 472 l 472 (527)
T PF15066_consen 472 L 472 (527)
T ss_pred H
Confidence 3
No 58
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.74 E-value=2.2e+02 Score=29.48 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007822 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDR 181 (588)
Q Consensus 102 L~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R 181 (588)
+-..+..=...+.++.+.+..-..++..+..+|..+...+...-. +.+=+...|..|+..|..+.....+|
T Consensus 29 ~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~---------~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK---------EIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333466666777788888888888888888888888887764321 22347889999999999999999999
Q ss_pred HHHHHHHHHHHHH------HHHHh-C-CCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 182 LHKVLEFVSTVHD------LCGVL-G-MDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQE 253 (588)
Q Consensus 182 ~~kv~~l~~~I~~------L~~~L-g-id~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~ 253 (588)
.+.+..-...++. +++++ + -+|.+.|..+.. - ..-.+-....|..+......|++.+.....+++.
T Consensus 100 ~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtA-----i-~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~ 173 (265)
T COG3883 100 QELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTA-----I-SVIVDADKKILEQQKEDKKSLEEKQAALEDKLET 173 (265)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHH-----H-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9977766655543 12221 1 123332211100 0 0001122455666666666676666666665554
Q ss_pred HHHHHHHH
Q 007822 254 LATQLIDL 261 (588)
Q Consensus 254 l~~~l~~L 261 (588)
+..-..+|
T Consensus 174 l~al~~e~ 181 (265)
T COG3883 174 LVALQNEL 181 (265)
T ss_pred HHHHHHHH
Confidence 44444443
No 59
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=54.42 E-value=11 Score=35.59 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCCcchHHHH
Q 007822 323 FKRQGELEEIFARAHIEIDPVAAR 346 (588)
Q Consensus 323 ~k~r~eLeelw~~~~~~~e~r~~~ 346 (588)
.+.|.+|-+||+.|++|.-.|+.|
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyF 26 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYF 26 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhh
Confidence 567899999999999999999876
No 60
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=54.22 E-value=2.5e+02 Score=28.42 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHH
Q 007822 160 TLKKLDEYQAQL-QELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVL 238 (588)
Q Consensus 160 S~~~L~~l~~~L-~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~ 238 (588)
..++|++....+ ..+..|+..|...+.++.+.+..++..=... .-.+..-+++.|.....
T Consensus 151 i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~-------------------~e~f~~~v~~Ei~~lk~ 211 (247)
T PF06705_consen 151 ILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG-------------------DEQFQNFVLEEIAALKN 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHHHHH
Confidence 344555444443 4678999999999999999999887632211 12334567888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007822 239 ALKEDKKQRLHKLQELATQLID 260 (588)
Q Consensus 239 ~L~e~K~~R~~ki~~l~~~l~~ 260 (588)
.|..+...|...=+++...|..
T Consensus 212 ~l~~e~~~R~~~Dd~Iv~aln~ 233 (247)
T PF06705_consen 212 ALALESQEREQSDDDIVQALNH 233 (247)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999998874444444443
No 61
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.28 E-value=1.4e+02 Score=28.37 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHH
Q 007822 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTV 237 (588)
Q Consensus 158 dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l 237 (588)
++|.+.+..+...+..|+.+...-...+..+..++..|...+- .+.|...+
T Consensus 68 ~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----------------------------~~el~~~i 118 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-----------------------------NEELREEI 118 (169)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhh
Q 007822 238 LALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVT 279 (588)
Q Consensus 238 ~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~ 279 (588)
..|+.+......++..+...-.. ++++++......+
T Consensus 119 ~~l~~e~~~l~~kL~~l~~~~~~------vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLRSGSKP------VSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHH
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=52.36 E-value=3.1e+02 Score=29.02 Aligned_cols=84 Identities=11% Similarity=0.010 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC--CC--CCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 007822 60 AKSRAQLLQALSDAKIELASLLSALGEKSIA--GL--GIPEKTSGTIKEQLAAIAPA--LEQLWKQKEERVKEFSDVQSQ 133 (588)
Q Consensus 60 ~~~r~~L~q~I~~~~~El~~L~~eLge~~~~--~~--~~~~~~~~tL~eql~~l~~~--le~Lr~~K~eR~~ef~~l~~q 133 (588)
.-....|.+-|.+.+..+..+-.+.-..+.+ .. ..++..-..+..|+..++.+ ++.-..-++=|++-+..++..
T Consensus 69 ~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~ 148 (312)
T smart00787 69 QFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEG 148 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888877752211 00 01233345566777777665 666777788899999988888
Q ss_pred HHHHHhHhcC
Q 007822 134 IQKICGEIAG 143 (588)
Q Consensus 134 I~~l~~eL~~ 143 (588)
+..-...|-.
T Consensus 149 L~~~~~~l~~ 158 (312)
T smart00787 149 LDENLEGLKE 158 (312)
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 63
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=52.17 E-value=1.2e+02 Score=24.85 Aligned_cols=65 Identities=31% Similarity=0.373 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 13 ETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECL-DVYKRKVEQAAKSRAQLLQALSDAKIELAS 79 (588)
Q Consensus 13 ~~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le~e~~-~v~~~~V~e~~~~r~~L~q~I~~~~~El~~ 79 (588)
-++..++|.-||.=||.|-.....-.+.+.+..+++- .+|+ -|-+-.-.++++++-.+++..++.
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq--~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQ--HDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhHHHHHHHHHh
Confidence 4667789999999999998877655555555554433 3343 345555556666666666555554
No 64
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.03 E-value=2.2e+02 Score=27.17 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 109 IAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEF 188 (588)
Q Consensus 109 l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l 188 (588)
.+..++.+|-.......++..+..++... ++||+ +++.-..+.++.....|.+..++|-..+..+
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~k-e~lge--------------~L~~iDFeqLkien~~l~~kIeERn~eL~~L 68 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQK-EELGE--------------GLHLIDFEQLKIENQQLNEKIEERNKELLKL 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776666666666666666655 44443 4567778889999999999999999988888
Q ss_pred HHHHHHHHHHhC
Q 007822 189 VSTVHDLCGVLG 200 (588)
Q Consensus 189 ~~~I~~L~~~Lg 200 (588)
...+..-...|.
T Consensus 69 k~~~~~~v~~L~ 80 (177)
T PF13870_consen 69 KKKIGKTVQILT 80 (177)
T ss_pred HHHHHHHHHHHH
Confidence 777665554443
No 65
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=49.25 E-value=24 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHH
Q 007822 365 ADMDNQIAKAKEEA-HSRKEILDKVE 389 (588)
Q Consensus 365 ~~~E~eI~~lke~~-~~~k~Il~~ve 389 (588)
..||.||..++..| ..|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 46899999988776 56899999886
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.78 E-value=5.4e+02 Score=30.72 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 116 LWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (588)
Q Consensus 116 Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L 195 (588)
+..++..+..++..|..+++.|...|+..-. +++ .-+..|+.+.+..+.+...+..+...|+.+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~-----------~~t-----t~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV-----------DIT-----TQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee-----------ccc-----hHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888888888888887774321 112 122344455555555555555555555555
Q ss_pred HHHhC
Q 007822 196 CGVLG 200 (588)
Q Consensus 196 ~~~Lg 200 (588)
-..|+
T Consensus 499 q~kl~ 503 (1118)
T KOG1029|consen 499 QEKLQ 503 (1118)
T ss_pred HHHHH
Confidence 55554
No 67
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=48.29 E-value=3.2e+02 Score=27.99 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 186 LEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQL 258 (588)
Q Consensus 186 ~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l 258 (588)
......+......|+.+.... ....|+..... . +-....+..|+..+.+++.++.+|...+..+...+
T Consensus 104 ~~~~~~~~~~l~~L~~~~~~L-~~~lp~~~~~~---~-~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 104 RSKLESIEENLELLSGPIEEL-EASLPSSSPSD---S-PQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHHHTSSHHHH-HHHS--B---S---S-GSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCChhhH-HhhCCCCCccc---c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666554332 22234433111 1 22378999999999999999999988877776533
No 68
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.26 E-value=3.8e+02 Score=30.74 Aligned_cols=134 Identities=21% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (588)
Q Consensus 52 ~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~ 131 (588)
|+..+.+.....+.-.-++.++..++..++..|...|. .|..+...+..++.-+..=-..+.++.
T Consensus 260 ~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~---------------~L~~ve~Rl~~L~~l~RKY~~~~~~l~ 324 (557)
T COG0497 260 YDGKLSELAELLEEALYELEEASEELRAYLDELEFDPN---------------RLEEVEERLFALKSLARKYGVTIEDLL 324 (557)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhCCCc
Q 007822 132 SQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK--------SDRLHKVLEFVSTVHDLCGVLGMDF 203 (588)
Q Consensus 132 ~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek--------~~R~~kv~~l~~~I~~L~~~Lgid~ 203 (588)
.-..++-.+|..-.. +...++.|+..+..++.++ ..|.+....+...|..-+..|+|.-
T Consensus 325 ~~~~~~~~el~~L~~-------------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~ 391 (557)
T COG0497 325 EYLDKIKEELAQLDN-------------SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEK 391 (557)
T ss_pred HHHHHHHHHHHHhhh-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q ss_pred ccccccccCC
Q 007822 204 FSTVTEVHPS 213 (588)
Q Consensus 204 ~~~v~evhps 213 (588)
.....+++|.
T Consensus 392 a~F~ve~~~~ 401 (557)
T COG0497 392 ARFTVELKPL 401 (557)
T ss_pred ceEEEEeccC
No 69
>PRK03918 chromosome segregation protein; Provisional
Probab=47.87 E-value=5.7e+02 Score=30.71 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhH
Q 007822 358 VEPAELLADMDNQIAKAKEEAHSRKE 383 (588)
Q Consensus 358 ~~~e~lL~~~E~eI~~lke~~~~~k~ 383 (588)
.+..+++..++.+|..+...+..-+.
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~l~~ 473 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEE 473 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766654443
No 70
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=47.27 E-value=3.8e+02 Score=28.51 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhHhCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 007822 18 SLLHKLQEIWDEVGENDEER-----DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQA----------LSDAKIELASLLS 82 (588)
Q Consensus 18 ~ll~eL~~IWdeIG~~e~er-----~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~----------I~~~~~El~~L~~ 82 (588)
+++-+|..+-.|+|.|...= ...+.. ...|+-++.=.+.|....|--..+. -.....++..+|.
T Consensus 62 ~f~~Els~~L~El~CPy~~L~~G~~~~rl~~-~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~~i~~ 140 (318)
T PF10239_consen 62 SFLLELSGFLKELGCPYSALTSGDISDRLQS-KEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELKAICQ 140 (318)
T ss_pred HHHHHHHHHHHhcCCCcHHHcCCcchhhhcC-HHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHHHHHH
Confidence 47888888888999885411 000100 1122233333333332222211111 2344568999999
Q ss_pred HhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHH
Q 007822 83 ALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLK 162 (588)
Q Consensus 83 eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~ 162 (588)
+||.+..+ .+.+..+.++.|.++++++-. .+... +.+. |.+ ...||.+
T Consensus 141 ~L~l~~p~-------~~i~~~~lf~~i~~ki~~~L~---------------------~lp~~-~~~~--PLl-~~~L~~~ 188 (318)
T PF10239_consen 141 ALGLPKPP-------PNITASQLFSKIEAKIEELLS---------------------KLPPG-HMGK--PLL-KKSLTDE 188 (318)
T ss_pred HhCCCCCC-------CCCCHHHHHHHHHHHHHHHHH---------------------hcCcc-ccCC--CCc-CCCCCHH
Confidence 99997653 345666666666665554432 23221 1122 222 5579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007822 163 KLDEYQAQLQELQKEKSDRLH 183 (588)
Q Consensus 163 ~L~~l~~~L~~Lq~Ek~~R~~ 183 (588)
+.+.+...-+.|..||.-|..
T Consensus 189 Qw~~Le~i~~~L~~EY~~RR~ 209 (318)
T PF10239_consen 189 QWEKLEKINQALSKEYECRRQ 209 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=47.12 E-value=5.8e+02 Score=30.59 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFS 128 (588)
Q Consensus 49 ~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~ 128 (588)
...|++-|...+..+..+..+|..++..+..+-.++.--... -.-+-++++.-...+|+++.+...-.+++.
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~t--------i~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDT--------IQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 478999998888888888888876666655554433221000 011233455555566666666666666666
Q ss_pred HHHHHHHHHHhHhc
Q 007822 129 DVQSQIQKICGEIA 142 (588)
Q Consensus 129 ~l~~qI~~l~~eL~ 142 (588)
.-...|..+.+.|.
T Consensus 159 Ak~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 159 AKAHDIFMIGEDLH 172 (1265)
T ss_pred hhhHHHHHHHHHHh
Confidence 66666666666654
No 72
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=46.83 E-value=1.5e+02 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007822 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (588)
Q Consensus 53 ~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eL 84 (588)
+.+||..+....-|-+.....+.|......+.
T Consensus 90 RkkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 90 RKKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 73
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=46.78 E-value=3.9e+02 Score=28.57 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC---CC----------CCCCCCCHHHHHHHHHHHHH
Q 007822 48 CLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGL---GI----------PEKTSGTIKEQLAAIAPALE 114 (588)
Q Consensus 48 ~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~---~~----------~~~~~~tL~eql~~l~~~le 114 (588)
...+|.+..++.-. .. ...+..+-.++...+..|++|..... +. ......++...+..|.....
T Consensus 7 a~S~YsE~ka~lvr--~e-~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~~ 83 (356)
T cd09237 7 KESLYSEEKAKLLR--AE-VERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQSA 83 (356)
T ss_pred HHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHHH
Confidence 44677766554422 22 46777888899999999999743210 00 00111122223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 115 QLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTL---KKLDEYQAQLQELQKEKSDRLHKVLEFVST 191 (588)
Q Consensus 115 ~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~---~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~ 191 (588)
.......+-...+..=...+..+-..+|.. ..-. +...++. .++..|+..|..-..- =.++......
T Consensus 84 ~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~-Wtr~-----~S~~~~~~l~~~~~k~~~~L~~A~~S----D~~l~~~~~~ 153 (356)
T cd09237 84 SWVNEIDSSYNDLDEEMKEIEKMRKKILAK-WTQS-----PSSSLTASLREDLVKLKKSLVEASAS----DEKLFSLVDP 153 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc-----cchhhhHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHH
Confidence 333333333444444444445555555541 1111 1112222 3333333333322221 2234455555
Q ss_pred HHHHHHHhCCCccccccccc--C-------CCCCCCCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 192 VHDLCGVLGMDFFSTVTEVH--P-------SLNDSTGVQSK-SISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (588)
Q Consensus 192 I~~L~~~Lgid~~~~v~evh--p-------sl~d~~~~~~~-~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~ 259 (588)
+......|+-+... +.... | ++.|....+.. .+ ...+..|+..+.+|+.+|.+|...+++|+.+++
T Consensus 154 ~~~~l~lL~~~~~~-l~~~~~~p~~~~~~~slld~d~~~~~~~~-~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 154 VKEDIALLLNGGSL-WEELFGFSSSGSPEPSLLDLDDSQNEQTV-LKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHHHcCChHH-HHHHhcCCCCCCCCCcccCCCcccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666543221 11111 2 22221110000 11 356889999999999999999999999988765
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.52 E-value=4e+02 Score=28.25 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=13.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 007822 222 SKSISNDTLARLAKTVLALKE 242 (588)
Q Consensus 222 ~~~lS~~~L~~L~~~l~~L~e 242 (588)
+.+.|..=+..|...++.|+.
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 456667667777776666644
No 75
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=44.84 E-value=7e+02 Score=30.92 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=21.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007822 221 QSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMD 266 (588)
Q Consensus 221 ~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~ 266 (588)
++.++ +-|++|+..++....-- +..|...+....+.|.
T Consensus 1232 ePLDl--SDlDkLk~~LQ~iNQ~L------V~~LIn~iR~slnqme 1269 (1439)
T PF12252_consen 1232 EPLDL--SDLDKLKGQLQKINQNL------VKALINTIRVSLNQME 1269 (1439)
T ss_pred Cccch--hhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Confidence 34555 44888887777664322 3444555555555555
No 76
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.80 E-value=5.2e+02 Score=29.11 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC--CCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 007822 47 ECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSA-LG--EKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (588)
Q Consensus 47 e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~e-Lg--e~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~ 119 (588)
..++.+-+.|.++.+.-+.-.-.|+.++..+..|... |. ..... ..+.+.+|.--++.|+.+|+.|..+
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqei----lr~~G~~L~~~EE~Lr~Kldtll~~ 426 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEI----LRKRGYALTPDEEELRAKLDTLLAQ 426 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCcCCccHHHHHHHHHHHHHH
Confidence 4566666777777776666667777777766666432 11 11111 1223344444455566666666554
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.88 E-value=7.8e+02 Score=30.91 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007822 228 DTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMD 266 (588)
Q Consensus 228 ~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~ 266 (588)
..|.--+..+.+.+++-..-...+.....++.+||.+|.
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666667788888888888775
No 78
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=42.04 E-value=3.6e+02 Score=26.74 Aligned_cols=179 Identities=18% Similarity=0.240 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Q 007822 14 TTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLG 93 (588)
Q Consensus 14 ~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~ 93 (588)
+.|.++ .=.-|..||+..-+. .-..|+.++..-..-.+++....+.+..+.
T Consensus 5 ~gCqsa---YY~amEkvG~hKRdi--------------lvdrVe~Ardsq~eaqeQF~sALe~f~sl~------------ 55 (201)
T PF11172_consen 5 TGCQSA---YYSAMEKVGVHKRDI--------------LVDRVEDARDSQQEAQEQFKSALEQFKSLV------------ 55 (201)
T ss_pred HHhHHH---HHHHHHHhCCchhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 456664 345677888875322 233566665555555556665555555543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 007822 94 IPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNL-SLGDQAPSVDESDLTLKKLDEYQAQLQ 172 (588)
Q Consensus 94 ~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~-~~~~~~~~v~~~dlS~~~L~~l~~~L~ 172 (588)
...++.|....+.|...++..+..-.+=..-+..+...-..+.++-.... .|.+ +. =.--|..+|...+.+..
T Consensus 56 --~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~--~s--LR~~S~~kL~~tr~~Y~ 129 (201)
T PF11172_consen 56 --NFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSN--AS--LRRASEQKLAETRRRYA 129 (201)
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HH--HHHHHHHHHHHHHHHHH
Confidence 34678999999999999998887654444444444444444443322111 0111 00 00126677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 173 ELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLH 249 (588)
Q Consensus 173 ~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ 249 (588)
.|-+-...=..++.-+...+++..-.|. .+|....|..|+.++..++..-...+.
T Consensus 130 ~L~~aM~~Ae~km~PVL~~~~D~vL~LK----------------------HNLNA~AI~sL~~e~~~~~~di~~Li~ 184 (201)
T PF11172_consen 130 QLIKAMRRAESKMQPVLAAFRDQVLYLK----------------------HNLNAQAIASLQGEFSSIESDISQLIK 184 (201)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHh----------------------ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666666666655555 245567888888888777655544433
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=41.79 E-value=5.9e+02 Score=29.18 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 106 LAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS--LGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLH 183 (588)
Q Consensus 106 l~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~--~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~ 183 (588)
+...+..|++-.+.+..-..++..+..++..+-..+..... .+.. .+.+--...|..++..+..+...+..=..
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r----e~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAR----EKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666554432210 0000 01111234455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhC
Q 007822 184 KVLEFVSTVHDLCGVLG 200 (588)
Q Consensus 184 kv~~l~~~I~~L~~~Lg 200 (588)
.+..+..++..|+..|+
T Consensus 170 e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 55556666666666555
No 80
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.70 E-value=8.2e+02 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=13.5
Q ss_pred hHHHHHHHHH--HHHHHHHHcCCceEE
Q 007822 434 IPALVETLVA--KTRAWEEDHGISFTY 458 (588)
Q Consensus 434 lPkl~~~L~~--~l~~wE~e~g~~Fl~ 458 (588)
|-+=+..|.+ .|.+--.-...||.+
T Consensus 1067 LSGGEKsLtAlAllFAi~~~~PaPf~v 1093 (1163)
T COG1196 1067 LSGGEKSLTALALLFAIQKYRPAPFYV 1093 (1163)
T ss_pred cCCcHHHHHHHHHHHHHHhhCCCCeee
Confidence 3344445443 344445556778876
No 81
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.41 E-value=69 Score=31.27 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007822 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (588)
Q Consensus 101 tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~ 180 (588)
++-+.+..++..|.++.+.+.+-..++..+..+++.+-..+. --...|..+...+..|+.+...
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~----------------~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS----------------EKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHH----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655555554444444422221 1456778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007822 181 RLHKVLEFVSTVHDLCGVL 199 (588)
Q Consensus 181 R~~kv~~l~~~I~~L~~~L 199 (588)
+-..+.+....+..+-+++
T Consensus 135 l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8777777766666665544
No 82
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=39.96 E-value=4.9e+02 Score=27.68 Aligned_cols=193 Identities=16% Similarity=0.219 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--CCCCCHHHHHHHHHHH---HHHHHHHHHH
Q 007822 48 CLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPE--KTSGTIKEQLAAIAPA---LEQLWKQKEE 122 (588)
Q Consensus 48 ~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~--~~~~tL~eql~~l~~~---le~Lr~~K~e 122 (588)
...+|.++.++.-+. ....+..+-.++...++.|+.|........+ .-+.+|.+.-..+... ++.+..-
T Consensus 7 a~S~Y~E~ka~lvr~---~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~--- 80 (337)
T cd09234 7 ASSLYSEEKAKLLRE---VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEA--- 80 (337)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHH---
Confidence 457787776655433 3677788888999999999998752110011 1234566665555432 1111111
Q ss_pred HHHHHHHHHHHHHHHHhHh----cCC--------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 007822 123 RVKEFSDVQSQIQKICGEI----AGN--------LSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD---RLHKVLE 187 (588)
Q Consensus 123 R~~ef~~l~~qI~~l~~eL----~~~--------~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~---R~~kv~~ 187 (588)
+..+.++...+..+..+. ... ..++.. .+|..-...|+..+..++.-... -=..|..
T Consensus 81 -~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~-------~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~ 152 (337)
T cd09234 81 -MGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKR-------GSSIAHVTELKRELKKYKEAHEKASQSNTELHK 152 (337)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCC-------CCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 222222222222222211 100 012210 11222233344444433332211 2223334
Q ss_pred HHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 188 FVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (588)
Q Consensus 188 l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~ 259 (588)
...........|..+... +..-.|+..... .+-....+..|+..+.+|+.++.+|...+++|+.+++
T Consensus 153 ~~~~~~~~l~lL~~~~~~-l~~~iPs~~~~~----~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 153 AMNLHIANLKLLAGPLDE-LQKKLPSPSLLD----RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHcCcHHH-HHhhCCCccccC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444455566544322 222345422111 1234567999999999999999999999998887655
No 83
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.90 E-value=6.7e+02 Score=29.26 Aligned_cols=80 Identities=11% Similarity=0.209 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007822 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (588)
Q Consensus 101 tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~ 180 (588)
.+.++...+...+..|+++|..-+..+..|..+|..|-..+...+.... ...+|... ..|+..+..|+++++.
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~------pa~pse~E-~~Lq~E~~~L~kElE~ 98 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP------PAGPSEVE-QQLQAEAEHLRKELES 98 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc------cccchHHH-HHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999888876552111 12445444 3455556666665544
Q ss_pred HHHHHHH
Q 007822 181 RLHKVLE 187 (588)
Q Consensus 181 R~~kv~~ 187 (588)
=..++..
T Consensus 99 L~~qlqa 105 (617)
T PF15070_consen 99 LEEQLQA 105 (617)
T ss_pred HHHHHHH
Confidence 4443333
No 84
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.63 E-value=1.2e+02 Score=30.26 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 007822 48 CLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (588)
Q Consensus 48 ~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~ 119 (588)
+...+.+....-...|.+++++|.....|...|...+++.+-.. ++.-..++..++..++..+..++.+
T Consensus 19 it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l---p~~~Rs~~~~KlR~yksdl~~l~~e 87 (220)
T KOG1666|consen 19 ITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVREL---PPNFRSSYLSKLREYKSDLKKLKRE 87 (220)
T ss_pred HHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444567888899999999999999999988754322 2334567777788877777776654
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=38.37 E-value=4.7e+02 Score=27.06 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHH
Q 007822 361 AELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLE 402 (588)
Q Consensus 361 e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ee~~Le 402 (588)
...+..+|.+|..++.. |-..+..+..+++-...|+
T Consensus 261 ~~~i~~le~el~~l~~~------~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 261 QAEIAELEEELAELREE------MARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHH------HHHHHHHHHHHHHHHHhHH
Confidence 34455666666665554 3344445555555444443
No 86
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.95 E-value=4.4e+02 Score=26.59 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 007822 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (588)
Q Consensus 99 ~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL 141 (588)
-+-|++.+..++..++++.++|.+-++++..++.+.......|
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888889999999999999988888888777666554433
No 87
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=37.59 E-value=5.4e+02 Score=27.52 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc---C-
Q 007822 68 QALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA---G- 143 (588)
Q Consensus 68 q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~---~- 143 (588)
..+..-..+...+...+|.. ..+ +....-+.+|.+.+..|+..|+.-..-=..=...|......|.-||.-.. .
T Consensus 94 ~~L~~E~~ed~~~R~k~g~~-Wtr-~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~ 171 (356)
T cd09237 94 NDLDEEMKEIEKMRKKILAK-WTQ-SPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWEEL 171 (356)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccc-ccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 34444445666677777762 221 00233456889999999999888776655555566666665555544111 0
Q ss_pred --CCCCCCCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 144 --NLSLGDQAPSVDESDL------TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD 194 (588)
Q Consensus 144 --~~~~~~~~~~v~~~dl------S~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~ 194 (588)
.|....+.+...+.|. -...+..|+..+..|+.-+.+|...+.++...++.
T Consensus 172 ~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~ 230 (356)
T cd09237 172 FGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHN 230 (356)
T ss_pred hcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111010111112111 14578899999999999999999988888777654
No 88
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=37.32 E-value=5.1e+02 Score=30.17 Aligned_cols=142 Identities=18% Similarity=0.304 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHH
Q 007822 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL--WNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAE 304 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~L--W~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e 304 (588)
...++.+.+.+..|.+.+.+-.++++.+...+..| |.-+++|.+.-.....+...+ +.++.+..+...
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld~~l~~~~~~~~~~~~~----------G~i~~~~~~~~~ 161 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFV----------GTVPEDKLEELK 161 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHhCCCCcEEEEE----------EEecchhhhhHH
Confidence 44667777777778777777777777776666654 999999876543322221111 223333333210
Q ss_pred HHHHHHHH--HHHHHHHH----HH-HHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHH
Q 007822 305 VEVERLDQ--LKASRMKE----IA-FKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEE 377 (588)
Q Consensus 305 ~Ev~RLe~--lK~~~mke----li-~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~ 377 (588)
.+...... .....=.. +. .+...++.++++.++++.-. +.. ...+.+.++.++.++..++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~----------~p~-~~~p~~~l~~l~~~l~~l~~~ 230 (646)
T PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLE----------LEE-EGTPSELIREIKEELEEIEKE 230 (646)
T ss_pred hhccCceEEEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEec----------CCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000000 00 12335566666666555431 111 246789999999999988887
Q ss_pred HHhhhHHHHHHH
Q 007822 378 AHSRKEILDKVE 389 (588)
Q Consensus 378 ~~~~k~Il~~ve 389 (588)
.+.-+.-+..+.
T Consensus 231 ~~~~~~~l~~~~ 242 (646)
T PRK05771 231 RESLLEELKELA 242 (646)
T ss_pred HHHHHHHHHHHH
Confidence 776555554443
No 89
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.20 E-value=9e+02 Score=29.98 Aligned_cols=305 Identities=15% Similarity=0.288 Sum_probs=136.3
Q ss_pred HhHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHH
Q 007822 27 WDEVGEND--EERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKE 104 (588)
Q Consensus 27 WdeIG~~e--~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~e 104 (588)
||+=-+.. .-|++.+.+|. ++.. -+..+.+.+.....|-..|+-+..++..+-..|...... -.-+-.
T Consensus 649 wdek~~~~L~~~k~rl~eel~-ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~E--------l~~~~~ 718 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELK-EIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELE--------LQRTES 718 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 77654442 23455444444 3333 223455555566666666666666665555333321110 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHK 184 (588)
Q Consensus 105 ql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~k 184 (588)
.+..+.|.+-++.++-..|-....+|+.++..+-+.+-..... .+ .++ +.+|..+-- +.+...+
T Consensus 719 ~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~-----~i---gv~---ir~Yee~~~--~~~~a~k--- 782 (1141)
T KOG0018|consen 719 EIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCR-----RI---GVR---IREYEEREL--QQEFAKK--- 782 (1141)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hc---Cee---eehHHHHHH--HHHHHHH---
Confidence 2334444555555555555555556666555554444321110 00 111 222222211 3333333
Q ss_pred HHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007822 185 VLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNL 264 (588)
Q Consensus 185 v~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~ 264 (588)
..++-+.+..|-..|. |.+. . =++..+.+++..+..++.+-..-.+.-..+...|.+. ..
T Consensus 783 ~~ef~~q~~~l~~~l~--fe~~-~----------------d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~ 842 (1141)
T KOG0018|consen 783 RLEFENQKAKLENQLD--FEKQ-K----------------DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EE 842 (1141)
T ss_pred HHHHHHHHHHHhhhhh--heec-c----------------cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HH
Confidence 3356666666655554 3332 0 0234555555555555544333333333333333333 22
Q ss_pred cCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch--
Q 007822 265 MDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDP-- 342 (588)
Q Consensus 265 L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~-- 342 (588)
|.- -+.+.|......+.. ....+..+-.++..|..-- ..+...|++...|...|-..|-++.=.
T Consensus 843 ~e~--k~k~~~~~~~~e~~e-----------~~k~~~~~~~~~tkl~~~i-~~~es~ie~~~~er~~lL~~ckl~~I~vP 908 (1141)
T KOG0018|consen 843 LEK--KNKSKFEKKEDEINE-----------VKKILRRLVKELTKLDKEI-TSIESKIERKESERHNLLSKCKLEDIEVP 908 (1141)
T ss_pred HHH--HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 222 113444433221110 0122222222332222221 225666788888888888888665421
Q ss_pred -HH-HHHHhHhh--hc-CCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 007822 343 -VA-AREKIMTL--ID-SGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSAC 395 (588)
Q Consensus 343 -r~-~~~~~~~~--i~-s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~ 395 (588)
.. ....+... |+ +| -+.++. +...|....+......|-+..+++...+-
T Consensus 909 l~~gs~~d~~~~ieidy~~--L~~~y~--L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~ 962 (1141)
T KOG0018|consen 909 LSSGSMDDIVIGIEIDYSG--LPREYK--LQQKLEEKQSVLNRIAPNLKALERLDEVR 962 (1141)
T ss_pred ccCCCccccceeccccccc--ccHHHH--HHHHHHHHHHHHHHhCcchHHHhhhhhHH
Confidence 00 00000000 11 11 234444 77777778888888888888888875554
No 90
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.17 E-value=5.2e+02 Score=27.19 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 007822 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK-------EERVK 125 (588)
Q Consensus 53 ~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K-------~eR~~ 125 (588)
...|.+....|..+-..+..+..++..+....+.... .++++......| ..|+.+.... .+.++
T Consensus 68 neev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~--------~~~~~~~ler~i-~~Le~~~~T~~L~~e~E~~lvq 138 (294)
T COG1340 68 NEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNL--------GGRSIKSLEREI-ERLEKKQQTSVLTPEEERELVQ 138 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------cCCCHHHHHHHH-HHHHHHHHhcCCChHHHHHHHH
Confidence 3456666666666666666666777777666665431 223333221111 1122111111 12233
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 007822 126 EFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFS 205 (588)
Q Consensus 126 ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~ 205 (588)
.+.++..+++..-..+. ....+.++...+..+.++-++=..+|..+.+.+..+...|---|
T Consensus 139 ~I~~L~k~le~~~k~~e-----------------~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~-- 199 (294)
T COG1340 139 KIKELRKELEDAKKALE-----------------ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLF-- 199 (294)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33333333333322222 23455666677777777777666667677776666655543221
Q ss_pred ccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 206 TVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (588)
Q Consensus 206 ~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~L 261 (588)
.-.+.+....+.|.++-.+...++..+...+..+
T Consensus 200 ----------------------~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 200 ----------------------EEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2345555666666555555555555554444433
No 91
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.03 E-value=6.9e+02 Score=28.63 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 54 ~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
+.|+++...++.+...|..++.|+..+..-+-.
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 477888888888888888888888877654443
No 92
>PRK09039 hypothetical protein; Validated
Probab=35.85 E-value=5.8e+02 Score=27.34 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 63 RAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 63 r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
...+-++++.++.+|+.|-..|+..-. ....|-+.+..++..++.++..+.. +..... ...
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~--------~~~~l~~~l~~l~~~l~~a~~~r~~-------Le~~~~----~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ--------GNQDLQDSVANLRASLSAAEAERSR-------LQALLA----ELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHh----hhh
Confidence 344556666666777777666666432 3345666677777777766655432 222222 111
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 143 GNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV 198 (588)
Q Consensus 143 ~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~ 198 (588)
. ....-..++..+...|...+.+.++-..+|.-+..+|..|-..
T Consensus 109 ~------------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 109 G------------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred h------------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0 1123467778888888888888888888888888888777554
No 93
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.54 E-value=1.9e+02 Score=29.97 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHH
Q 007822 231 ARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERL 310 (588)
Q Consensus 231 ~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RL 310 (588)
+.|+.++-+=.++...+.+-+-...+..+.|..++..-.|-++....++.... ++-...-..+..-++||
T Consensus 8 ~~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~sr~~~~~ekke~i~r~n~k~~----------d~v~~~~~~~~~~~erl 77 (359)
T KOG4398|consen 8 EQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG----------DLVEKKTIDLRSHYERL 77 (359)
T ss_pred HHHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----------hHHHHHHHHHHHHHHHH
Confidence 33444443334444444444444444555555555555555555555554321 22222223355668899
Q ss_pred HHHHHHHHHHHH
Q 007822 311 DQLKASRMKEIA 322 (588)
Q Consensus 311 e~lK~~~mkeli 322 (588)
..|+.++|.+|+
T Consensus 78 ~~lr~shi~el~ 89 (359)
T KOG4398|consen 78 ANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=34.82 E-value=7.8e+02 Score=28.57 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHH
Q 007822 228 DTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEV 307 (588)
Q Consensus 228 ~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev 307 (588)
.-+..|+..++.|......-...+..+...+..++.....-..+...-..... +. .=+.+.+...+.=|
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~----------~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LK----------KKTVELLPDAEENI 396 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHhcCcHHHH
Confidence 34555666666666665555555666666666666555433333222211111 00 00122233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007822 308 ERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDK 387 (588)
Q Consensus 308 ~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~ 387 (588)
..|+.+-...... ..+|..-|...-.+..+.... .-....+ --......+..+|......+.|..-
T Consensus 397 ~kL~~~v~~s~~r-----l~~L~~qWe~~R~pL~~e~r~--lk~~~~~-------~~~e~~~~~~~ik~~r~~~k~~~~e 462 (594)
T PF05667_consen 397 AKLQALVEASEQR-----LVELAQQWEKHRAPLIEEYRR--LKEKASN-------RESESKQKLQEIKELREEIKEIEEE 462 (594)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHH--HHHHHhh-------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444333 355666777654444322111 1011110 0111223445566666666777777
Q ss_pred HHHHHHHhHH-HHHHHHHcCCchh--hhccccchhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCceEEc
Q 007822 388 VEKWMSACEE-ESWLEDYNRDENR--YNASRGAHLNLKRAEKARILVNKIPALVETLVAKTRAWEEDHGISFTYD 459 (588)
Q Consensus 388 vekw~~l~~e-e~~Le~~~~D~nR--~~~~RG~~~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~d 459 (588)
+..|...... ...++.-.+|.|| |. .|= +-+-..-.|.+.-|.|+-.=+..|...|..-...-.+.|.|-
T Consensus 463 ~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt-~RI-lEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLPKDVNRSAYT-RRI-LEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHH-HHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 7777544332 2347888899988 55 332 344556678888888876667777777777777777888763
No 95
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=34.17 E-value=69 Score=38.47 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=16.8
Q ss_pred hhcccCCCCCCCCCCCCCccCCCCCCC
Q 007822 498 QESIFGSRPSPARPAGPKKVVGPRTNG 524 (588)
Q Consensus 498 ~e~~~gs~psp~~~~~~~~~~~~~~~~ 524 (588)
+-+.||-.|-|+| -+|=..|++.|.
T Consensus 1155 ~StrygDGp~PPK--maryDnG~~~n~ 1179 (1282)
T KOG0921|consen 1155 DSTRYGDGPGPPK--MARYDNGPSNNN 1179 (1282)
T ss_pred ccccccCCCCCcc--cccccCCCccCc
Confidence 4578888898876 445556666553
No 96
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.12 E-value=1.1e+02 Score=28.16 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 13 ETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKR------------KVEQAAKSRAQLLQALSDAKIELASL 80 (588)
Q Consensus 13 ~~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le~e~~~v~~~------------~V~e~~~~r~~L~q~I~~~~~El~~L 80 (588)
+....-.+.+|+. .-.|.+.++-.+ |.|.-..+-++ .=.+.++.+..|.++|..+..|.+.+
T Consensus 27 d~LvsmSVReLNr--~LrG~~reEVvr----lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 27 DELVSMSVRELNR--HLRGLSREEVVR----LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHhhHHHHHH--HhcCCCHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666888888 566888765322 11222222121 23456677778888888888887777
Q ss_pred HHHhC
Q 007822 81 LSALG 85 (588)
Q Consensus 81 ~~eLg 85 (588)
+.++.
T Consensus 101 ~~E~d 105 (135)
T KOG4196|consen 101 RRELD 105 (135)
T ss_pred HHHHH
Confidence 75543
No 97
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=34.04 E-value=6.7e+02 Score=27.54 Aligned_cols=323 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Q 007822 14 TTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLG 93 (588)
Q Consensus 14 ~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~ 93 (588)
++....+.+...+=-.+|+=-..-...+.-|...+.......-+-....-..+...+....++|...+..|...+.+..+
T Consensus 26 ~~ar~~l~~~~~~~~k~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~ 105 (412)
T PF04108_consen 26 TSARQSLEESVPLSAKTGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFF 105 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccc
Q ss_pred CCCCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh------------cCCCCCCCCC
Q 007822 94 IPEKTSG----------TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI------------AGNLSLGDQA 151 (588)
Q Consensus 94 ~~~~~~~----------tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL------------~~~~~~~~~~ 151 (588)
.++.... ++-.....|...+.++...+..-=..+..+...+..+...| ......+..
T Consensus 106 ~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 184 (412)
T PF04108_consen 106 RPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSS- 184 (412)
T ss_pred cCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCC-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC-----------------ccccccccc
Q 007822 152 PSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL---GMD-----------------FFSTVTEVH 211 (588)
Q Consensus 152 ~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~L---gid-----------------~~~~v~evh 211 (588)
....+|..-+..+-..+..|+.+..+=++-+..+-..|....... .++ ....+.+++
T Consensus 185 ---~~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~ 261 (412)
T PF04108_consen 185 ---PSSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQ 261 (412)
T ss_pred ---CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHH
Q ss_pred CCCCCCCCCccC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHhHHHh
Q 007822 212 PSLNDSTGVQSK---------SISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSE----ERRLFDHV 278 (588)
Q Consensus 212 psl~d~~~~~~~---------~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~e----Er~~F~~~ 278 (588)
..+..-...... .........+...+..|..-+. ++...-.....+...|.....+.. +-..+...
T Consensus 262 ~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~ 340 (412)
T PF04108_consen 262 ERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE-RLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEF 340 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCC
Q 007822 279 TCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNV 358 (588)
Q Consensus 279 ~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~ 358 (588)
+.++ ......+=.||.|=... ..+|+.++.....+|..+.+ +++..+..|. -+-|+.
T Consensus 341 Y~~F--------------~~aY~~LL~Ev~RRr~~-~~k~~~i~~~~~eeL~~l~e------eE~~~Re~F~--~e~Gdy 397 (412)
T PF04108_consen 341 YEGF--------------LSAYDSLLLEVERRRAV-RDKMKKIIREANEELDKLRE------EEQRRREAFL--KEYGDY 397 (412)
T ss_pred HHHH--------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHccCc
Q ss_pred ChHHHH
Q 007822 359 EPAELL 364 (588)
Q Consensus 359 ~~e~lL 364 (588)
-|++++
T Consensus 398 LP~diw 403 (412)
T PF04108_consen 398 LPEDIW 403 (412)
T ss_pred CChhhC
No 98
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=33.29 E-value=9.9e+02 Score=29.32 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 007822 433 KIPALVETLVAKTRAWEE 450 (588)
Q Consensus 433 KlPkl~~~L~~~l~~wE~ 450 (588)
.+-.-++.|...+.+|+.
T Consensus 969 ~l~~~i~~lg~aiee~~~ 986 (1179)
T TIGR02168 969 EARRRLKRLENKIKELGP 986 (1179)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344445555556666553
No 99
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=32.95 E-value=9e+02 Score=28.74 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (588)
Q Consensus 159 lS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~ 193 (588)
-+.+.+..++.++..++..+.+|..-..++...|.
T Consensus 534 ~~~~~~~~~k~~l~~~~e~k~~r~~L~~~l~~~i~ 568 (714)
T KOG2220|consen 534 NSDEIVRQLKGYLDDLEELKAEREKLEGDLKVDIF 568 (714)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35678899999999999999999998888877777
No 100
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=32.55 E-value=5.3e+02 Score=25.92 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.1
Q ss_pred hchHHHHHHHHhhhhHHHHHHHHHHHHHHHH------------------HcCCceEEcCccHHHHHHHH
Q 007822 420 NLKRAEKARILVNKIPALVETLVAKTRAWEE------------------DHGISFTYDGVPLLAMLDEY 470 (588)
Q Consensus 420 ~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~------------------e~g~~Fl~dG~~ll~~l~e~ 470 (588)
++-|+...=+.+.|+|+++.++..++..=+. .+|...-....+|.+||++-
T Consensus 119 ~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~~k 187 (217)
T PF10147_consen 119 RLAREKEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQEK 187 (217)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHHHH
Confidence 3445666666777788888888776654332 25655555677899999863
No 101
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=32.27 E-value=2.9e+02 Score=22.87 Aligned_cols=52 Identities=27% Similarity=0.359 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCC-----ChHHHHHHHHHHHHHHHHHHHh
Q 007822 322 AFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNV-----EPAELLADMDNQIAKAKEEAHS 380 (588)
Q Consensus 322 i~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~-----~~e~lL~~~E~eI~~lke~~~~ 380 (588)
|+..+.||+-+-+...+|-.. .+ .|..|.. -+...+++++.+|.+||+...+
T Consensus 12 IE~~~~eIe~LL~~AkiSl~D-----yI--miKRGS~DmPe~l~~~~~~QideeV~~LKe~Ida 68 (79)
T PF10398_consen 12 IENAQEEIEILLKIAKISLVD-----YI--MIKRGSQDMPEHLNMAFLAQIDEEVEKLKEHIDA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHT--HHH-----HH--HHHTTSS---TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHH-----HH--HhcccCCcCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999888653 11 2444433 3578999999999999987543
No 102
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.13 E-value=8.7e+02 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 226 SNDTLARLAKTVLALKEDKKQRLHKLQELATQ 257 (588)
Q Consensus 226 S~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~ 257 (588)
-.+.+..|+..+.+++.+.+.-.+++.++...
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~ 244 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKK 244 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887777766666555543
No 103
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.34 E-value=3.7e+02 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007822 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNL 264 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~ 264 (588)
++.++.|...+..|+.....-.+.+..+..++..+=..
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666555443
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.31 E-value=5.8e+02 Score=26.02 Aligned_cols=128 Identities=14% Similarity=0.191 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 51 VYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (588)
Q Consensus 51 v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l 130 (588)
-.++.+...+.....+-.++..++.+++.+..-+...... -..++=..++++|...+..+..+...-..++.++
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k------l~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK------LSAVKDERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666655554443221 1334445578888888888888888888888888
Q ss_pred HHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhC
Q 007822 131 QSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLE----FVSTVHDLCGVLG 200 (588)
Q Consensus 131 ~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~----l~~~I~~L~~~Lg 200 (588)
...+..+.+++.. -.+++..+...+..++...+..+..+.+ +.+.+..|...|.
T Consensus 116 ~~~~~~l~~~i~~----------------l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 116 MEEIEKLEKEIED----------------LKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888777653 2334445555555555555555544443 4444444444444
No 105
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.30 E-value=8.6e+02 Score=27.96 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 66 LLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQ-------LAAIAPALEQLWKQKEERVKEFSDVQSQIQKIC 138 (588)
Q Consensus 66 L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eq-------l~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~ 138 (588)
+-..|+.+++....|..-|.+--- .+..--+|.+. .+.+...+..|..++..+-+.+..+..+|..--
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek-----~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kE 307 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREK-----DPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKE 307 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344556666665555555553111 12223344444 334556677777777766666666666555443
Q ss_pred hH
Q 007822 139 GE 140 (588)
Q Consensus 139 ~e 140 (588)
.+
T Consensus 308 eE 309 (581)
T KOG0995|consen 308 EE 309 (581)
T ss_pred HH
Confidence 33
No 106
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=31.08 E-value=5.3e+02 Score=25.46 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHc
Q 007822 301 EQAEVEVERLDQLKASRMKEIAFK-------RQGELEEIFARA 336 (588)
Q Consensus 301 ~~~e~Ev~RLe~lK~~~mkeli~k-------~r~eLeelw~~~ 336 (588)
+.+..||.|.+.-|..-|+..+.. ...++.++|..+
T Consensus 171 ~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 171 ELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888887777666665433 456788889865
No 107
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=30.55 E-value=1.1e+03 Score=29.21 Aligned_cols=154 Identities=12% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHH
Q 007822 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAE 304 (588)
Q Consensus 225 lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e 304 (588)
|.+..+....+.+..|+.++-+++- ++...+..+-+.|..-+--|+.=...+ ++| ++|.. ..-|+.+.
T Consensus 1176 L~dAyl~eitKqIsaLe~e~PKnlt---dvK~missf~d~laeiE~LrnErIKkH---GaS----kePLD--lSDlDkLk 1243 (1439)
T PF12252_consen 1176 LYDAYLVEITKQISALEKEKPKNLT---DVKSMISSFNDRLAEIEFLRNERIKKH---GAS----KEPLD--LSDLDKLK 1243 (1439)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCchh---hHHHHHHHHHhhhhHHHHHHHHHhhcc---CCC----CCccc--hhhHHHHH
Confidence 3456677777778888766665554 444555555555543221222222222 223 34544 46788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHH---HHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 007822 305 VEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVA---AREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSR 381 (588)
Q Consensus 305 ~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~---~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~ 381 (588)
..|+++.+ ...+.+|...|.-|..+=-+.+ ..++.. .|+.+..+.. ..|.++.-+....+|.++++++-..
T Consensus 1244 ~~LQ~iNQ---~LV~~LIn~iR~slnqme~~tf-~~q~~eiq~n~~ll~~L~~--tlD~S~~a~Kqk~di~kl~~~lv~k 1317 (1439)
T PF12252_consen 1244 GQLQKINQ---NLVKALINTIRVSLNQMEVKTF-EEQEKEIQQNLQLLDKLEK--TLDDSDTAQKQKEDIVKLNDFLVEK 1317 (1439)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 86666554 4566778788887777654443 222222 2222222222 2577888889999999999887655
Q ss_pred h----HHHHH-------HHHHHHHhH
Q 007822 382 K----EILDK-------VEKWMSACE 396 (588)
Q Consensus 382 k----~Il~~-------vekw~~l~~ 396 (588)
+ .++.+ |.+...+|+
T Consensus 1318 QKAYP~M~QlQ~ksealI~qLRelC~ 1343 (1439)
T PF12252_consen 1318 QKAYPAMVQLQFKSEALIIQLRELCE 1343 (1439)
T ss_pred hhhchHHHHHhhhhHHHHHHHHHHHH
Confidence 4 34444 556666665
No 108
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.47 E-value=9.9e+02 Score=28.43 Aligned_cols=146 Identities=15% Similarity=0.201 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 251 LQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELE 330 (588)
Q Consensus 251 i~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLe 330 (588)
+..++.+|..||.-.+.+.+- .+..+... .-+..+....+.+..||-+|. .|+.-+|..|.
T Consensus 547 ~~~irdQikhL~~av~~t~e~--srq~~~~~---------~~~~~~d~d~e~l~eqilKLK--------SLLSTKREQIa 607 (717)
T PF09730_consen 547 VAIIRDQIKHLQRAVDRTTEL--SRQRVASR---------SSASEADKDKEELQEQILKLK--------SLLSTKREQIA 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--Hhhhcccc---------ccCCcccccHHHhHHHHHHHH--------HHHHHHHHHHH
Confidence 456677777777766644332 11111100 012234566777777776654 45666677777
Q ss_pred HHHHHcCCCcchHHHHHHhHhh----hcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH-HHHHc
Q 007822 331 EIFARAHIEIDPVAAREKIMTL----IDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESW-LEDYN 405 (588)
Q Consensus 331 elw~~~~~~~e~r~~~~~~~~~----i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ee~~-Le~~~ 405 (588)
-|-..+----. ..+-..+. |++.-.-..+....+..|++.||+.++....+-.....+ |+|..- |++..
T Consensus 608 TLRTVLKANKq---TAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~R---CdEYvtQldemq 681 (717)
T PF09730_consen 608 TLRTVLKANKQ---TAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAAR---CDEYVTQLDEMQ 681 (717)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 77665521111 11211222 222223457889999999999999998888777777666 766544 66654
Q ss_pred CCchhhhccccchhhchHHHHHHHHhhhh
Q 007822 406 RDENRYNASRGAHLNLKRAEKARILVNKI 434 (588)
Q Consensus 406 ~D~nR~~~~RG~~~~LlreEK~Rk~i~Kl 434 (588)
+ +|--+|-+.|.+|-|
T Consensus 682 r-------------qL~aAEdEKKTLNsL 697 (717)
T PF09730_consen 682 R-------------QLAAAEDEKKTLNSL 697 (717)
T ss_pred H-------------HHHHhHHHHHHHHHH
Confidence 3 566677777777773
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.31 E-value=1e+03 Score=28.28 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=25.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 222 SKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQ 257 (588)
Q Consensus 222 ~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~ 257 (588)
+..|+..-...+++.+.+.-++-.+-+++++.+...
T Consensus 679 s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 679 SIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888887766666666666655544
No 110
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.31 E-value=4.1e+02 Score=23.31 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 228 DTLARLAKTVLALKEDKKQRLHKLQELATQLID 260 (588)
Q Consensus 228 ~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~ 260 (588)
+.++.+...+..|+.....-.+++.++...|.+
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444454444443
No 111
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=28.24 E-value=6.6e+02 Score=25.66 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 57 EQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQK 136 (588)
Q Consensus 57 ~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~ 136 (588)
.+.....+.+...+..-..+-..+....|. ...+. ....-..++...+..++..|+....--..=...|.....-|.-
T Consensus 39 ~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~-~W~r~-~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~ 116 (296)
T PF13949_consen 39 QEVRSILDEIEEMLDEEEREDEQLRAKYGE-RWTRP-PSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLEL 116 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-TCGSS--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCC-CcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344444455555555666677777766 22110 0111234677777777777777666655545555554444444
Q ss_pred HHhH---hcC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 137 ICGE---IAG-NLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVS 190 (588)
Q Consensus 137 l~~e---L~~-~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~ 190 (588)
||.- |.. -|.... ...+-..+.+..++..+..+..-+.+|...+..+..
T Consensus 117 L~~~~~~L~~~lp~~~~-----~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 117 LSGPIEELEASLPSSSP-----SDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HTSSHHHHHHHS--B--------SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCChhhHHhhCCCCCc-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4331 110 011000 112223677888888888888888888886666665
No 112
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.81 E-value=5.9e+02 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcC-CceEEcC-ccHHHHHHHHHHHHHHH
Q 007822 440 TLVAKTRAWEEDHG-ISFTYDG-VPLLAMLDEYAMLRQER 477 (588)
Q Consensus 440 ~L~~~l~~wE~e~g-~~Fl~dG-~~ll~~l~e~~~~r~eK 477 (588)
.+...+.++|+.-- --|.-.| .+|.++.++...|...|
T Consensus 343 ~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~~~i~~~f~~k 382 (593)
T PF06248_consen 343 EVLESVEEFEEALKELGFLSSDNTELSEFVDNIETHFANK 382 (593)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCchHHHHHHHhHHHHHHHH
Confidence 45557777777643 3333333 55777888777776655
No 113
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.74 E-value=1e+03 Score=27.74 Aligned_cols=160 Identities=20% Similarity=0.171 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHH-
Q 007822 226 SNDTLARLAKTVLALKEDKKQRLHKLQELAT------QLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALD- 298 (588)
Q Consensus 226 S~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~------~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~- 298 (588)
+..-|..+-.+...+++.+.+++.++..... .+..+|+.++...+.... .+. .++..
T Consensus 7 ~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ma~--~h~--------------~l~~~l 70 (611)
T KOG2398|consen 7 STKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEAMAK--SHL--------------ELSREL 70 (611)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHH--HHH--------------HHHHHH
Confidence 4456777778888888999888887654433 788899988876654321 111 01111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHH
Q 007822 299 --LIEQAEVEVERLDQLKASRMKEIAFKRQGE------LEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQ 370 (588)
Q Consensus 299 --~I~~~e~Ev~RLe~lK~~~mkeli~k~r~e------Leelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~e 370 (588)
.|...+.......+.++....+.|.+.... -..+.-.|-........+..-......+ .--=+..++.-
T Consensus 71 ~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~k---~~~~~~k~~~~ 147 (611)
T KOG2398|consen 71 QDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRCQEKESLKEKEK---RKKELAKAELK 147 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---hhhHHHHHHHH
Confidence 111111111111122222112222111110 0111111111111111122111111111 13336788888
Q ss_pred HHHHHHHHHhhhHHHHHH-----HHHHHHhHHHHHHHHH
Q 007822 371 IAKAKEEAHSRKEILDKV-----EKWMSACEEESWLEDY 404 (588)
Q Consensus 371 I~~lke~~~~~k~Il~~v-----ekw~~l~~ee~~Le~~ 404 (588)
|+++.+.|..+.+-+++| ++|..+|..-.-+|++
T Consensus 148 i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~ 186 (611)
T KOG2398|consen 148 IKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEES 186 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4677777766666654
No 114
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=27.17 E-value=9.3e+02 Score=27.03 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhcCCCCCCCCCCCC-CCCCCC-----HHHHHHHH--
Q 007822 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI----CGEIAGNLSLGDQAPSV-DESDLT-----LKKLDEYQ-- 168 (588)
Q Consensus 101 tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l----~~eL~~~~~~~~~~~~v-~~~dlS-----~~~L~~l~-- 168 (588)
.|.+-++....+|.+-|.+|+.-.-+|+.++..-..| ..+|-....+.. .+. -+..|| .++|..++
T Consensus 394 nLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvs--qclEmdk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 394 NLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVS--QCLEMDKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH--HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3555577778888888888887777777666543332 222322211000 000 011122 22333333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 169 ------AQLQELQKEKSDRLHKVLEFVSTVHD 194 (588)
Q Consensus 169 ------~~L~~Lq~Ek~~R~~kv~~l~~~I~~ 194 (588)
.-|+.|+.||..|.+.|..+..+.+.
T Consensus 472 lEkat~SALdlLkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 472 LEKATTSALDLLKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888776655443
No 115
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=27.14 E-value=8e+02 Score=26.26 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC-CCCCCCCCHHHHHHHHH---------HHHHHHH
Q 007822 48 CLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLG-IPEKTSGTIKEQLAAIA---------PALEQLW 117 (588)
Q Consensus 48 ~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~-~~~~~~~tL~eql~~l~---------~~le~Lr 117 (588)
...+|++..++. .+..+...|..+-.++...+..|++|.....+ .+..-+.+|.+.-..|+ ..+.+|.
T Consensus 7 a~s~Y~erk~~l--Vr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~ 84 (353)
T cd09236 7 AISIYDDRKDRL--VNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDVA 84 (353)
T ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456777665543 33445677788888999999999997543110 01223345665444433 3333333
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 007822 118 KQK---EERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD---RLHKVLEFVST 191 (588)
Q Consensus 118 ~~K---~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~---R~~kv~~l~~~ 191 (588)
+.+ .+-+.+...+......=|..+-. .++...+.- .+|..--..|...+..++.-... -=..|......
T Consensus 85 ~l~~~~~~~L~e~~~~L~~E~~ed~~~R~--k~g~~~Wtr---~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~ 159 (353)
T cd09236 85 RLAASDRAILEEAMDILDDEASEDESLRR--KFGTDRWTR---PDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDE 159 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HcCCCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 332 22222222222222222222221 122100111 22332222333333333332211 11234444555
Q ss_pred HHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 192 VHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (588)
Q Consensus 192 I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~ 259 (588)
+......|.-+... +....|+...... +..+ ...+..|+..+.+|..++.+|...+++|+.++.
T Consensus 160 ~~~~l~lL~~~~~~-l~~~~Ps~~~~~~--~~~~-~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 160 WEDLIQILTGDERD-LENFVPSSRRPSI--PPEL-ERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHcCCHHH-HHHhCCCCCCCCC--Cchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666544333 2233455321111 1122 467999999999999999999999999987665
No 116
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.69 E-value=1e+03 Score=27.35 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 112 ALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVST 191 (588)
Q Consensus 112 ~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~ 191 (588)
.++++....++|..+...-+.-+.+-|..|-..+...-+.....+.|.+.+ +..+-..++.|+.-.+.-..++.....-
T Consensus 613 ~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~E-lq~~~~~~~~L~~~iET~~~~~~KQ~~H 691 (741)
T KOG4460|consen 613 SLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKE-LQLIPDQLRHLGNAIETVTMKKDKQQQH 691 (741)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777888887788888888877665542211001112222211 1222223333332222222222221111
Q ss_pred HHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 192 VHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELAT 256 (588)
Q Consensus 192 I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~ 256 (588)
+-+-...|. -....+++.-...++..+.+|-.+-....++++....
T Consensus 692 ~~~v~~al~-------------------K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 692 MEKVLSALP-------------------KPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHHhhcc-------------------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1245566666777778888887777777777665544
No 117
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.63 E-value=1.2e+03 Score=28.09 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 109 IAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEF 188 (588)
Q Consensus 109 l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l 188 (588)
++..++.+...-+.-...+......|..|...|.+...... ...+...-..++.++..++..|+..+..+-.....+
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~---~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE---AEEEDNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444455555666666666643221110 001122345578888888888888887777766556
Q ss_pred HHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Q 007822 189 VSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRL-HKLQELATQLIDLWNLMDT 267 (588)
Q Consensus 189 ~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~-~ki~~l~~~l~~LW~~L~~ 267 (588)
...+|.-+ .+..+.. .-..|+..|+.= +-+...+ ..+.++-..|..|=..+++
T Consensus 210 r~~l~~~~---~~~~~~a----------------------~t~alq~~ie~K-d~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 210 REQLHRRL---QMERDDA----------------------ETEALQTVIEEK-DTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred hHHHHHHh---hcCCCch----------------------hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554433 2111111 111333333322 2222222 2366788888888888888
Q ss_pred CHHHHHh
Q 007822 268 PSEERRL 274 (588)
Q Consensus 268 p~eEr~~ 274 (588)
+..+|+.
T Consensus 264 ~~~~r~~ 270 (775)
T PF10174_consen 264 SEADRDR 270 (775)
T ss_pred cccchHH
Confidence 8776553
No 118
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=26.61 E-value=4.3e+02 Score=25.28 Aligned_cols=54 Identities=30% Similarity=0.368 Sum_probs=41.0
Q ss_pred Hhhh-hHHHHHHHHHHHHHHHHHcCCceEE--cCccHHHHHHH-HHHHHHHHHHHHHH
Q 007822 430 LVNK-IPALVETLVAKTRAWEEDHGISFTY--DGVPLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 430 ~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
-++. =|...+.|...=.+|++.+|-||.+ .|..--++|.. ...+....++|...
T Consensus 89 gl~~l~~~~~~~l~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~ 146 (166)
T PRK13798 89 GVADADEAVMAALAAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERKV 146 (166)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHHH
Confidence 4555 3677789999999999999999998 78888888885 44445556666543
No 119
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=25.76 E-value=1.2e+02 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007822 228 DTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLM 265 (588)
Q Consensus 228 ~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L 265 (588)
+.|..|...+..+...-....+.+..+..+|.+||+..
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555565555555555566778888999999863
No 120
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=25.71 E-value=5.8e+02 Score=24.16 Aligned_cols=54 Identities=28% Similarity=0.259 Sum_probs=41.8
Q ss_pred Hhhh-hHHHHHHHHHHHHHHHHHcCCceEE--cCccHHHHHHH-HHHHHHHHHHHHHH
Q 007822 430 LVNK-IPALVETLVAKTRAWEEDHGISFTY--DGVPLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 430 ~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
-++. =|...+.|...=.+|++.+|-||.+ .|..--++|.. ...+....|+|.+.
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~ 141 (158)
T TIGR03180 84 GVDGADEETRAALLEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPNDPEQELTI 141 (158)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 5556 3677889999999999999999998 78888888886 44555566666554
No 121
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=25.39 E-value=4.5e+02 Score=30.30 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHcCCch---hhhccccchhhchHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHcCCc
Q 007822 380 SRKEILDKVEKWMSACEEESWLEDYNRDEN---RYNASRGAHLNLKRAEKARILVNK-IPALVETLVAKTRAWEEDHGIS 455 (588)
Q Consensus 380 ~~k~Il~~vekw~~l~~ee~~Le~~~~D~n---R~~~~RG~~~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~ 455 (588)
+...+++.+.....-+.++.|++--.--|. |-. .+|.....-+.|....-++. =|...+.|...=.+|++.+|-|
T Consensus 42 ~~~~l~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~-~~~~~~~~S~~EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~ 120 (591)
T PRK13799 42 SIAAIKQALAGVLDAADRAAKLDLIRAHPELAGKAA-EAGELTAESTGEQAKAGLNLCTPEEFAAIQKLNADYGKKFGFP 120 (591)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccCcc-cccccchhhHhHHHhhhcccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 334444444444445555666665554442 111 22222234456777778888 5888899999999999999999
Q ss_pred eEE--cCc-----cHHHHHHH-HHHHHHHHHHHHHH
Q 007822 456 FTY--DGV-----PLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 456 Fl~--dG~-----~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
|++ .|. .--++|.. ...+....|+|.+.
T Consensus 121 fii~~~g~~~~~~~~~~il~~l~~Rl~n~~e~E~~~ 156 (591)
T PRK13799 121 FILAVKGARGAGLAKAEIIATFERRLHNHPDDELGE 156 (591)
T ss_pred EEEEEcCcccCCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 998 564 35666664 44445556666554
No 122
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=25.11 E-value=5.4e+02 Score=27.22 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=54.4
Q ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHH
Q 007822 39 KMLLQIEKECL---------DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAI 109 (588)
Q Consensus 39 ~~l~~le~e~~---------~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l 109 (588)
.++.+||+.++ ..|+++|.+.+..+..|-.+++..+--.........-.=-+ ...+-+|.+++|..-
T Consensus 42 qTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD----~nDkvMPVKqWLEER 117 (351)
T PF07058_consen 42 QTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKD----ENDKVMPVKQWLEER 117 (351)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc----cCCccccHHHHHHHH
Confidence 34556665443 46888999999999998888887777666665533322111 345678888876541
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC
Q 007822 110 APALEQLWKQKEERVKEFSDVQSQIQKICGEIAGN 144 (588)
Q Consensus 110 ~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~ 144 (588)
.-++.+++.|++-|+..
T Consensus 118 ------------------R~lQgEmQ~LrDKLAia 134 (351)
T PF07058_consen 118 ------------------RFLQGEMQQLRDKLAIA 134 (351)
T ss_pred ------------------HHHHHHHHHHHHHHHHH
Confidence 12667777777777654
No 123
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.03 E-value=7.8e+02 Score=25.42 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 160 TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGM 201 (588)
Q Consensus 160 S~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgi 201 (588)
....+..++..++.|+.+...=..+...+-..|..+...++.
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 456667777777777777777666667777777777666664
No 124
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.95 E-value=2.9e+02 Score=20.52 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 43 QIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 43 ~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
|||..| ++++.-.+.....-+.|.++.+.+++++..|-..|+.
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 355543 4566777888888888999999999999888776653
No 125
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.82 E-value=7.4e+02 Score=25.09 Aligned_cols=40 Identities=15% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 103 ~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
..++..++..++.++++-....+.+..++..+..-...|.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444
No 126
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=24.70 E-value=5e+02 Score=23.24 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=40.7
Q ss_pred HHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Q 007822 333 FARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACE 396 (588)
Q Consensus 333 w~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ 396 (588)
+..++|+.++-. .++...+++.....++.+.+..++..+++....-..+.+.++.+...|.
T Consensus 53 lr~~G~sL~eI~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (127)
T TIGR02044 53 ARQVGFSLEECK---ELLNLWNDPNRTSADVKARTLEKVAEIERKISELQSMRDQLEALAQACP 113 (127)
T ss_pred HHHCCCCHHHHH---HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445888887633 2334444444455677777888888888888888888888887755443
No 127
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.67 E-value=1.4e+03 Score=28.36 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 007822 68 QALSDAKIELASLLSALGEKS 88 (588)
Q Consensus 68 q~I~~~~~El~~L~~eLge~~ 88 (588)
..|..-+++|..+|.-+|.++
T Consensus 155 rvVStKk~dl~~vv~~f~I~v 175 (1074)
T KOG0250|consen 155 RVVSTKKEDLDTVVDHFNIQV 175 (1074)
T ss_pred ccccccHHHHHHHHHHhCcCC
Confidence 456677788888888888754
No 128
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.67 E-value=4.7e+02 Score=22.82 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=39.3
Q ss_pred HHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 007822 334 ARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSAC 395 (588)
Q Consensus 334 ~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~ 395 (588)
..+++|.++=. .++.....+.....+..+.++.++..+.+....-+..++.++.+...|
T Consensus 54 r~~G~sL~eI~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (113)
T cd01109 54 RNTGMSIKDIK---EYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLDYKIDYY 112 (113)
T ss_pred HHcCCCHHHHH---HHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677776532 223333333333467788888899999988888888888888775543
No 129
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.53 E-value=7.4e+02 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD 194 (588)
Q Consensus 161 ~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~ 194 (588)
...|.+|....+.|..|+....+.+..+-..|..
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888887777755544444333
No 130
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.36 E-value=2.4e+02 Score=26.09 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 007822 227 NDTLARLAKTVLALKE 242 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e 242 (588)
..-|+.|...++.|..
T Consensus 108 ~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 108 RKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556555555543
No 131
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.89 E-value=1.2e+03 Score=27.13 Aligned_cols=145 Identities=17% Similarity=0.274 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCC-----CCCCCCCCCCCC----HHHHHHHHHH
Q 007822 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLG-----DQAPSVDESDLT----LKKLDEYQAQ 170 (588)
Q Consensus 100 ~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~-----~~~~~v~~~dlS----~~~L~~l~~~ 170 (588)
.||.+.+..++.....-..+....+.++..+..+++.+..++....... +. -.. ..+++ ..++-++-.-
T Consensus 422 ~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~-e~~-~k~~~Rs~Yt~RIlEIv~N 499 (594)
T PF05667_consen 422 APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKEL-EKL-PKDVNRSAYTRRILEIVKN 499 (594)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC-CCCCCHHHHHHHHHHHHHh
Confidence 4666666666666555555555667777777777777766665321100 00 000 01121 4566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 171 LQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHK 250 (588)
Q Consensus 171 L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~k 250 (588)
+...+.+...=+.-...+..+|..+-..|.-.|.-+-.-| +.|+ + .+.+..+.-+.+..|.+.-.+-+..
T Consensus 500 I~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli---frdA-----K--kDe~~rkaYK~La~lh~~c~~Li~~ 569 (594)
T PF05667_consen 500 IRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI---FRDA-----K--KDEAARKAYKLLASLHENCSQLIET 569 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHh-----h--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777788888888888888885443221000 0111 1 3445555555555555555555555
Q ss_pred HHHHHH
Q 007822 251 LQELAT 256 (588)
Q Consensus 251 i~~l~~ 256 (588)
+.+.+.
T Consensus 570 v~~tG~ 575 (594)
T PF05667_consen 570 VEETGT 575 (594)
T ss_pred HHHhhH
Confidence 544433
No 132
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=23.64 E-value=9e+02 Score=25.65 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHH
Q 007822 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKE 376 (588)
Q Consensus 297 ~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke 376 (588)
..-|+.|++|-.=|+.+-.+++-+ |+++-..|.+|=....-+-..-.+.. .|..-...--+--..+|.|++++|-
T Consensus 13 ~kQiEIcqEENkiLdK~hRQKV~E-VEKLsqTi~ELEEaiLagGaaaNavr----dYqrq~~elneEkrtLeRELARaKV 87 (351)
T PF07058_consen 13 MKQIEICQEENKILDKMHRQKVLE-VEKLSQTIRELEEAILAGGAAANAVR----DYQRQVQELNEEKRTLERELARAKV 87 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346788888888888888888777 46776666666555444333222111 1110000011224456777777776
Q ss_pred HHHhhhHHHHHHHHHHHHhHH----HHHHHH
Q 007822 377 EAHSRKEILDKVEKWMSACEE----ESWLED 403 (588)
Q Consensus 377 ~~~~~k~Il~~vekw~~l~~e----e~~Le~ 403 (588)
.+..-.. --...|+..-+. ..|||+
T Consensus 88 ~aNRVA~--vvANEWKD~nDkvMPVKqWLEE 116 (351)
T PF07058_consen 88 SANRVAT--VVANEWKDENDKVMPVKQWLEE 116 (351)
T ss_pred hhhhhhh--hhcccccccCCccccHHHHHHH
Confidence 5543333 233467444221 347776
No 133
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.55 E-value=1.3e+03 Score=27.42 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (588)
Q Consensus 161 ~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~ 193 (588)
.+.+..|...+..|+.+.....+.=.++++.|.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 455567777777777776655554455555554
No 134
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=23.54 E-value=2.1e+02 Score=28.67 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007822 226 SNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNL 264 (588)
Q Consensus 226 S~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~ 264 (588)
|+.||+.|.+.+..|+..-++.-.-|...+.++.+||-.
T Consensus 2 s~etle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv~ 40 (216)
T PF07957_consen 2 SDETLEELKKQVDELQALVKKQSKLISKTGQQVLELQVK 40 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999888888899999999999964
No 135
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=23.22 E-value=97 Score=33.80 Aligned_cols=86 Identities=26% Similarity=0.309 Sum_probs=50.8
Q ss_pred CHHHHHhHHHhhhcccccccCCCCCCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHH
Q 007822 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQ-AEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAR 346 (588)
Q Consensus 268 p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~-~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~ 346 (588)
|.+||+.|......+.+ ..+.|+. ++..++.|+++|++.|.+++ .-+|..=|...+-
T Consensus 371 pl~EQ~kI~~~l~~l~~-----------~~d~i~~~~~~~l~~L~~lKqslLqk~f---tG~l~~~~~~~~~-------- 428 (461)
T PRK09737 371 PLEEQAEIVRRVEQLFA-----------YADTIEKQVNNALARVNNLTQSILAKAF---RGELTAQWRAENP-------- 428 (461)
T ss_pred CHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCccccccchhCc--------
Confidence 46889999876542211 0234444 47788999999999999887 3444444422211
Q ss_pred HHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Q 007822 347 EKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHS 380 (588)
Q Consensus 347 ~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~ 380 (588)
..+ +++.-.+.||+.+-+|-+..-..-.+
T Consensus 429 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
T PRK09737 429 ----SLI-SGENSAAALLEKIKAERAASGGKKAS 457 (461)
T ss_pred ----ccc-CCcChHHHHHHHHHHHHhhccCCCcc
Confidence 011 23345688898888776554433333
No 136
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=23.13 E-value=1.2e+03 Score=27.11 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcCCC
Q 007822 229 TLARLAKTVLALKEDKK-QRLH-KLQELATQLIDLWNLMDTP 268 (588)
Q Consensus 229 ~L~~L~~~l~~L~e~K~-~R~~-ki~~l~~~l~~LW~~L~~p 268 (588)
.|.+|+..-+.|++--. .+.. +-+.+|..|+.||.-|...
T Consensus 446 aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g 487 (657)
T KOG1854|consen 446 ALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKG 487 (657)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc
Confidence 44455555555543222 1111 3578999999999999887
No 137
>PRK14127 cell division protein GpsB; Provisional
Probab=23.12 E-value=5.4e+02 Score=22.95 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=28.9
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 30 VGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 30 IG~~e~er~~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
-||+.++-+..|.++-+..-.++ .....|...++.++.++..+-..+..
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~--------~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQ--------KEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 39999988887766654433322 23344555555555666655555554
No 138
>PHA03418 hypothetical E4 protein; Provisional
Probab=23.09 E-value=1.7e+02 Score=29.39 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 007822 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPS 269 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~ 269 (588)
..-|..++..+.+.+....+. ++++...|..+|.+|+||+
T Consensus 191 ~~LL~~VA~lL~kWE~~f~qL---V~~I~~DL~dYW~kL~tPQ 230 (230)
T PHA03418 191 HGLLGTVACLLGTWEESFRQL---VEDIQEDLDDYWRKLGIPQ 230 (230)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCC
Confidence 457888888888888887765 5667788999999999984
No 139
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=22.95 E-value=1.1e+02 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 007822 101 TIKEQLAAIAPALEQLWK 118 (588)
Q Consensus 101 tL~eql~~l~~~le~Lr~ 118 (588)
.+..++..++..+..|++
T Consensus 58 ~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 58 QYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.72 E-value=1.2e+03 Score=26.82 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007822 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTP 268 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p 268 (588)
.++|+.+...+..++.+-.....+++..+..-.++|..++.-
T Consensus 452 ~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E 493 (581)
T KOG0995|consen 452 ASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKE 493 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666777777777888876643
No 141
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.71 E-value=9.6e+02 Score=26.35 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHH
Q 007822 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWN-LMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQA 303 (588)
Q Consensus 225 lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~-~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~ 303 (588)
-....+..+..++..+++........++.|...+..=.. .+..=+|||- =.+.+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~-------------------------R~erL 263 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERY-------------------------RYERL 263 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------------------HHHHH
Confidence 345566666666666666655555556655554331111 1111111111 13445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHH
Q 007822 304 EVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAK 375 (588)
Q Consensus 304 e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lk 375 (588)
|+.|+-+.++..- + |..++.+|..++.+|-|--.+|. -|-.|.++.+-..|.+++
T Consensus 264 EeqlNd~~elHq~---E-i~~LKqeLa~~EEK~~Yqs~eRa-------------Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 264 EEQLNDLTELHQN---E-IYNLKQELASMEEKMAYQSYERA-------------RDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH---H-HHHHHHHHHhHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHH
Confidence 6666666655443 2 34567888888888876665542 244788888888888887
No 142
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=22.36 E-value=7.1e+02 Score=24.01 Aligned_cols=114 Identities=19% Similarity=0.245 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHh-CCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 007822 69 ALSDAKIELASLLSAL-GEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSL 147 (588)
Q Consensus 69 ~I~~~~~El~~L~~eL-ge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~ 147 (588)
.|+.+++.|+.|-..+ |..... ...+-++.+.|..+...|..... +.+|++ .+..++..|+.-|. |.+
T Consensus 6 ~l~~Le~Ri~~LE~~v~G~~~~~-----~~~~~~v~~~L~~~~~~L~~~~s-~re~i~---~l~k~~~eL~~YLD--P~~ 74 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYGENGSK-----EGQPEKVIDSLLSVQSALNSAAS-KRERIK---ELFKRIEELNKYLD--PNF 74 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCCccc-----cCCchHHHHHHHHHHHHHHHHHc-ccHHHH---HHHHHHHHHHHHcC--chh
Confidence 4566666777776665 664432 12334566777777777766643 333444 46666777766554 222
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q 007822 148 GDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFST 206 (588)
Q Consensus 148 ~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~ 206 (588)
.+ ....+..-+++-+-. ....+.....+...|++|-.+|+-+..+.
T Consensus 75 ~e-----~~~l~~~~K~~~ILa--------~e~~i~~~~~~Leki~~L~pvL~se~i~~ 120 (174)
T PF07426_consen 75 IE-----EIQLPDSAKLQIILA--------EEDEIKSTAELLEKIKSLEPVLDSESIRN 120 (174)
T ss_pred hh-----hcccchHHHHHHHHH--------ccHHHHHHHHHHHHHHHhhhhcCcHHHhh
Confidence 22 111222234433322 23445556788889999988888654443
No 143
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.33 E-value=7.3e+02 Score=27.98 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC---CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGL---GIP-EKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (588)
Q Consensus 54 ~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~---~~~-~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~ 129 (588)
..+.+++...+.+...++.+++++ .++..++....... +.. ......+.+.+..+..++.+++....+--.++.+
T Consensus 78 ~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
T TIGR02231 78 KQIRELEAELRDLEDRGDALKALA-KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRE 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666655 33444443211000 000 1112236677778888888888888888888888
Q ss_pred HHHHHHHHHhHhc
Q 007822 130 VQSQIQKICGEIA 142 (588)
Q Consensus 130 l~~qI~~l~~eL~ 142 (588)
+..+|..+-.+|.
T Consensus 157 ~~~~l~~l~~~l~ 169 (525)
T TIGR02231 157 LEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
No 144
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.29 E-value=9.4e+02 Score=25.39 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=31.2
Q ss_pred ccCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 221 QSKSISNDTLARLAKT--------VLALKEDKKQRLHKLQELATQLIDL 261 (588)
Q Consensus 221 ~~~~lS~~~L~~L~~~--------l~~L~e~K~~R~~ki~~l~~~l~~L 261 (588)
....+|.++...|... +.+|-++|...+.+|..|..+|.+.
T Consensus 197 ~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 197 KRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred cccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888777665 8888888888888888888777643
No 145
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=22.13 E-value=6.7e+02 Score=23.66 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhh-HHHHHHHHHHHHHHHHHcCCceEE--cCccHHHHHHH-HHHHHHHHHHHHHH
Q 007822 423 RAEKARILVNKI-PALVETLVAKTRAWEEDHGISFTY--DGVPLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 423 reEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
+.|-...-+..+ |...+.|...=.+|++.+|-||.+ +|..--++|.. +..+....++|.+.
T Consensus 77 ~~EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~ 141 (157)
T TIGR03164 77 TSEQASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNNDRETEFAR 141 (157)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 334444446664 778889999999999999999998 78888888886 44445555666544
No 146
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=21.56 E-value=4.2e+02 Score=24.94 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHcCCchhhhc--cccchhhchHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHcCCceEE--
Q 007822 384 ILDKVEKWMSACEEESWLEDYNRDENRYNA--SRGAHLNLKRAEKARILVNKI-PALVETLVAKTRAWEEDHGISFTY-- 458 (588)
Q Consensus 384 Il~~vekw~~l~~ee~~Le~~~~D~nR~~~--~RG~~~~LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~-- 458 (588)
++..+..-..-+.++.|++--.--|.==.. ..|.-......|....-+..+ |...+.|...=.+|++.+|-||++
T Consensus 39 L~~a~~~~~~~~~~~~~~~~l~aHP~lg~~~~~~~~~s~~S~~EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGf~Fvi~~ 118 (159)
T PF09349_consen 39 LIAAADEAVRSLSEEDKLEALRAHPRLGERAARAGNLSAASASEQASAGLDSLDEEELAELAALNQAYEEKFGFPFVICA 118 (159)
T ss_dssp HHHHHHHHHHCS-HHHHHHHHHTS--TTSHHHHHCCCHHHHHHHTHHCCTTSTHHHHHHHHHHHHHHHHHHHSS-----G
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhCcccccccccccccchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCceEeec
Confidence 333333333344456666665555431110 001111333445555555563 778899999999999999999998
Q ss_pred cCccHHHHHHH-HHHHHHHHHHHHHH
Q 007822 459 DGVPLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 459 dG~~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
.|..--++|.. ...+....+.|.+.
T Consensus 119 ~g~s~~~Il~~l~~Rl~n~~~~E~~~ 144 (159)
T PF09349_consen 119 RGRSAAEILAALERRLNNDPEEELRI 144 (159)
T ss_dssp TT--HHHHHHHHHHHTTS-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888875 33334455555443
No 147
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=21.40 E-value=1.9e+02 Score=34.47 Aligned_cols=209 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 180 DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (588)
Q Consensus 180 ~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~ 259 (588)
.|.+.+..-...+.+-...++....... ..........++.++..+.+++++-.+-.+..+.+..++.
T Consensus 31 ~r~de~erkL~~le~~I~k~~~~~~~~~------------~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~ 98 (759)
T PF01496_consen 31 RRCDEMERKLRFLEEEIKKLKIPLPEKN------------DKPDAPKPKEIDELEEELEELEEELRELNENLEKLEEELN 98 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccccc------------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCCHHHHHhHHHh-------hhcccccccCCC---------CCCCChHHHHHHHHHHHHHHHHH----HHHHHH
Q 007822 260 DLWNLMDTPSEERRLFDHV-------TCNISAYVDGVT---------VPGALALDLIEQAEVEVERLDQL----KASRMK 319 (588)
Q Consensus 260 ~LW~~L~~p~eEr~~F~~~-------~~~i~~s~~e~~---------~~~~lS~~~I~~~e~Ev~RLe~l----K~~~mk 319 (588)
+|.+....=.+.+..+... ..++....+.+. --|.++.+.++.++..+.|...- +...+.
T Consensus 99 ~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie 178 (759)
T PF01496_consen 99 ELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIE 178 (759)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHTT-----S----
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeee
Q ss_pred HHH------------------HHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 007822 320 EIA------------------FKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSR 381 (588)
Q Consensus 320 eli------------------~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~ 381 (588)
+.. .+...++.++|+..++..-. +......+.+.+..++.+|..+++....-
T Consensus 179 ~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~----------~p~~~~~p~e~~~~l~~~i~~l~~~~~~~ 248 (759)
T PF01496_consen 179 EILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYD----------LPEDEGTPEEAIKELEEEIEELEKELEEL 248 (759)
T ss_dssp --EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B--------------GGGGG-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecC----------CCCccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHH-HHHHHHHHhHHHHHHHHHcCCchhhh
Q 007822 382 KEILD-KVEKWMSACEEESWLEDYNRDENRYN 412 (588)
Q Consensus 382 k~Il~-~vekw~~l~~ee~~Le~~~~D~nR~~ 412 (588)
+.-+. ..++|..... .|.+...+.-.+|.
T Consensus 249 ~~~l~~~~~~~~~~l~--~~~~~l~~~~~~~~ 278 (759)
T PF01496_consen 249 EEELKKLLEKYAEELE--AWYEYLRKEKEIYE 278 (759)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
No 148
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=21.26 E-value=7e+02 Score=23.49 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007822 231 ARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDT 267 (588)
Q Consensus 231 ~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~ 267 (588)
+-+.......+..+..-...+..+...+..+|..+.-
T Consensus 86 ~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k 122 (191)
T cd07610 86 EPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433343444555677888888888887754
No 149
>PHA03419 E4 protein; Provisional
Probab=20.94 E-value=2.3e+02 Score=27.82 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 007822 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPS 269 (588)
Q Consensus 225 lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~ 269 (588)
..+.-|..++..+.+.+....+. ++++...|..+|.+|+||+
T Consensus 159 ~~e~LL~~vA~~L~kWE~~f~qL---V~~I~~DL~~YW~kL~tPQ 200 (200)
T PHA03419 159 DQEGLLPGVALRLQKWEQQFDQL---VDNIVVDLRDYWQRLRTPQ 200 (200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCC
Confidence 34567888888888888887765 5667788999999999984
No 150
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.81 E-value=7.8e+02 Score=23.88 Aligned_cols=72 Identities=10% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHH
Q 007822 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAK 235 (588)
Q Consensus 156 ~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~ 235 (588)
+..+|.+.|..|...+..|+..+..-.+.+...-.+|..|.+.|- +..++.
T Consensus 73 F~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----------------------------~eemQe 123 (201)
T KOG4603|consen 73 FDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----------------------------TEEMQE 123 (201)
T ss_pred hcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------hHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007822 236 TVLALKEDKKQRLHKLQELAT 256 (588)
Q Consensus 236 ~l~~L~e~K~~R~~ki~~l~~ 256 (588)
.++.|..+-....+++..+.+
T Consensus 124 ~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 124 EIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 151
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.70 E-value=8.3e+02 Score=27.76 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 47 ECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKE 126 (588)
Q Consensus 47 e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~e 126 (588)
+|..+++ .++.+++.+..+..++......+..|-++|--.. .+=.+|+..+..+|-.|..+......+
T Consensus 442 Ec~aL~~-rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr-----------~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRALQK-RLESAEKEKESLEEELKEANQNISRLQDELETTR-----------RNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444 4677777777788888888888888877776532 223457777777777777665555555
Q ss_pred HHHHH
Q 007822 127 FSDVQ 131 (588)
Q Consensus 127 f~~l~ 131 (588)
|..++
T Consensus 510 I~~LK 514 (518)
T PF10212_consen 510 IQTLK 514 (518)
T ss_pred HHHHh
Confidence 55443
No 152
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.59 E-value=8.5e+02 Score=24.22 Aligned_cols=151 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 106 LAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKV 185 (588)
Q Consensus 106 l~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv 185 (588)
++-|+.+|.+...+-..+..++..|+.++...-+.+........ ..-+...--.-.|+.....|+....+..--..++
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~--~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ--ELQDSLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 186 LEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSIS-NDTLARLAKTVLALKEDKKQRLHKLQELATQLID 260 (588)
Q Consensus 186 ~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS-~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~ 260 (588)
..+-..+..|-..+... .....-...+..+........+ .+++..|...+++|..+-..-....+..+.....
T Consensus 90 ~~le~El~~Lr~~l~~~--~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 90 GQLEAELAELREELACA--GRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred hhhHHHHHHHHHHHHhh--ccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 153
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.44 E-value=1.2e+03 Score=25.87 Aligned_cols=180 Identities=18% Similarity=0.216 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 007822 39 KMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWK 118 (588)
Q Consensus 39 ~~l~~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~ 118 (588)
+.+.++.+++ .-....+.+.....+.|...|++.+.++..|-.+|-..... -.-+...++.+...++.+..
T Consensus 38 ~~l~q~q~ei-~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~--------l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEI-AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD--------LKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHhhHHHHHHHHHHHHH
Confidence 3444454443 33567888899999999999999999999999888765432 12345567788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 119 QKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKK---LDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (588)
Q Consensus 119 ~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~---L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L 195 (588)
++.+|...+..+..-+ -..|..|.. .+ .++.+. -..+..++..+..+..++...+......|...
T Consensus 109 q~r~qr~~La~~L~A~----~r~g~~p~~-----~l---l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 109 QEREQRRRLAEQLAAL----QRSGRNPPP-----AL---LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHHHHHHHHHHHHHHH----HhccCCCCc-----hh---hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 7755444444333322 223333311 00 122222 23455566666666666666444443333333
Q ss_pred HHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 196 CGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (588)
Q Consensus 196 ~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~ 259 (588)
-..+.-.-.+ ....+........+|.....++.+....+-..+.
T Consensus 177 ~~~iaaeq~~--------------------l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~ 220 (420)
T COG4942 177 RAEIAAEQAE--------------------LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220 (420)
T ss_pred HHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211000 1334455555555555555555555555554444
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.41 E-value=1.1e+03 Score=25.49 Aligned_cols=84 Identities=11% Similarity=0.220 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HH
Q 007822 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK-------EE 122 (588)
Q Consensus 50 ~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K-------~e 122 (588)
..+...+.+++..-.+|.++|......|..--.-|+..- .++.+.+......|.+.+.++ .+
T Consensus 230 ~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~ql-----------e~l~~eYr~~~~~ls~~~~~y~~~s~~V~~ 298 (359)
T PF10498_consen 230 KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQL-----------EPLIQEYRSAQDELSEVQEKYKQASEGVSE 298 (359)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445556677777777777777777777766655555422 134444444444444444444 55
Q ss_pred HHHHHHHHHHHHHHHHhHhcCC
Q 007822 123 RVKEFSDVQSQIQKICGEIAGN 144 (588)
Q Consensus 123 R~~ef~~l~~qI~~l~~eL~~~ 144 (588)
|.+++..+..+++.+-.+|...
T Consensus 299 ~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 299 RTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555543
No 155
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=20.33 E-value=2.6e+02 Score=28.04 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 007822 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSL 147 (588)
Q Consensus 102 L~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~ 147 (588)
+..|+..+...|+++-++..+-+++=.+...+.+.+|..||.+|..
T Consensus 34 ~~~Ql~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPla 79 (249)
T KOG3341|consen 34 MSKQLEVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPLA 79 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCccc
Confidence 4456777777788887777777888888999999999999999853
No 156
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=20.30 E-value=3e+02 Score=25.10 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 13 ETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSR 63 (588)
Q Consensus 13 ~~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le~e~~~v~~~~V~e~~~~r 63 (588)
..+-..++.||.+|-..--...+-+.+.|..|. |+-.|...+++|.+...
T Consensus 73 s~~L~~vieELdqi~~~~~~~~d~K~kiL~dL~-HLE~Vv~~KIaEIe~dl 122 (125)
T PF11944_consen 73 SPNLRYVIEELDQITGREQAEVDLKQKILDDLR-HLEKVVNSKIAEIERDL 122 (125)
T ss_pred cHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 355667889999998744333444566666665 67788888887766543
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.03 E-value=4.5e+02 Score=27.81 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 51 VYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 51 v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
.+...+...+.....+.+++..++.+-+.+..+|..
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666655543
Done!