Query 007822
Match_columns 588
No_of_seqs 253 out of 509
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 100.0 1.2E-38 4E-43 286.9 13.9 126 372-504 3-130 (130)
2 1i84_S Smooth muscle myosin he 72.8 8.7 0.0003 46.2 9.3 8 367-374 1156-1163(1184)
3 1i84_S Smooth muscle myosin he 72.8 15 0.00051 44.2 11.4 37 105-141 907-943 (1184)
4 1go4_E MAD1 (mitotic arrest de 67.1 25 0.00086 29.6 8.2 42 220-261 4-45 (100)
5 3ghg_A Fibrinogen alpha chain; 66.8 5.1 0.00018 43.2 4.8 89 101-195 54-143 (562)
6 3na7_A HP0958; flagellar bioge 61.8 1.2E+02 0.0041 29.4 23.7 111 53-199 17-127 (256)
7 1deq_A Fibrinogen (alpha chain 58.1 42 0.0014 34.8 9.6 45 100-144 56-100 (390)
8 1deq_A Fibrinogen (alpha chain 48.2 2.1E+02 0.007 29.7 12.8 18 265-282 153-170 (390)
9 1zke_A Hypothetical protein HP 48.0 83 0.0028 25.0 7.6 52 322-380 14-70 (83)
10 2lw1_A ABC transporter ATP-bin 47.9 40 0.0014 27.5 6.3 64 61-130 22-85 (89)
11 3gp4_A Transcriptional regulat 47.5 1.5E+02 0.005 26.1 12.1 77 334-415 56-132 (142)
12 1go4_E MAD1 (mitotic arrest de 40.8 1.1E+02 0.0039 25.6 7.9 38 159-196 9-46 (100)
13 3ghg_A Fibrinogen alpha chain; 38.2 1.1E+02 0.0039 32.9 9.4 35 297-332 116-150 (562)
14 1a92_A Delta antigen; leucine 37.9 56 0.0019 23.7 4.7 36 465-502 4-39 (50)
15 1l8d_A DNA double-strand break 36.2 1.8E+02 0.0063 24.0 9.3 86 52-141 15-101 (112)
16 3okq_A BUD site selection prot 35.5 2.4E+02 0.0082 25.1 18.4 126 235-410 14-139 (141)
17 1nfn_A Apolipoprotein E3; lipi 35.4 2.2E+02 0.0075 26.4 10.1 67 54-130 92-158 (191)
18 3oja_B Anopheles plasmodium-re 32.4 4.9E+02 0.017 27.8 15.1 126 162-321 456-581 (597)
19 2v4h_A NF-kappa-B essential mo 32.1 2.4E+02 0.0081 24.0 9.5 71 15-85 35-107 (110)
20 2lw9_A Unconventionnal myosin- 31.8 79 0.0027 22.9 4.7 39 297-335 5-43 (51)
21 3vkg_A Dynein heavy chain, cyt 30.2 2.5E+02 0.0085 37.5 12.3 94 100-195 2010-2103(3245)
22 3onj_A T-snare VTI1; helix, HA 29.5 2.3E+02 0.008 23.2 9.6 16 31-46 26-41 (97)
23 2jo8_A Serine/threonine-protei 27.9 56 0.0019 24.0 3.5 27 363-389 22-49 (51)
24 2w6b_A RHO guanine nucleotide 27.5 1.8E+02 0.006 21.6 6.0 20 420-439 32-52 (56)
25 3vkg_A Dynein heavy chain, cyt 26.8 5.5E+02 0.019 34.3 14.6 94 158-261 2010-2103(3245)
26 3v1a_A Computational design, M 26.2 67 0.0023 23.4 3.6 41 100-142 4-44 (48)
27 1yzm_A FYVE-finger-containing 26.0 83 0.0028 23.1 4.1 40 100-141 5-44 (51)
28 1p9i_A Cortexillin I/GCN4 hybr 24.9 1.1E+02 0.0038 19.3 3.9 28 231-258 2-29 (31)
29 1yf2_A Type I restriction-modi 24.6 76 0.0026 32.1 5.3 41 268-322 377-417 (425)
30 3ra3_B P2F; coiled coil domain 24.0 94 0.0032 19.2 3.4 21 60-80 6-26 (28)
31 2dfs_A Myosin-5A; myosin-V, in 23.7 4.1E+02 0.014 31.4 11.9 24 232-255 1020-1043(1080)
32 3qh9_A Liprin-beta-2; coiled-c 23.5 2.5E+02 0.0086 22.5 6.8 34 52-85 31-64 (81)
33 2zqm_A Prefoldin beta subunit 23.3 3.2E+02 0.011 22.6 8.2 37 227-263 69-105 (117)
34 2yy0_A C-MYC-binding protein; 22.8 1.4E+02 0.0047 22.0 4.9 31 112-142 20-50 (53)
35 4dci_A Uncharacterized protein 22.1 4.3E+02 0.015 23.7 9.8 71 58-137 33-103 (150)
36 2dfs_A Myosin-5A; myosin-V, in 22.1 1E+03 0.035 28.0 16.4 20 229-248 1024-1043(1080)
37 1q08_A Zn(II)-responsive regul 22.1 2.7E+02 0.0094 22.1 7.4 65 329-396 8-73 (99)
38 3na7_A HP0958; flagellar bioge 21.9 5.3E+02 0.018 24.7 20.7 111 53-192 52-162 (256)
39 2wq1_A General control protein 21.6 1.8E+02 0.0063 19.2 5.1 26 61-86 7-32 (33)
40 2yy0_A C-MYC-binding protein; 21.5 1.6E+02 0.0054 21.7 5.0 30 56-85 21-50 (53)
41 1ydx_A Type I restriction enzy 20.9 97 0.0033 31.6 5.2 41 268-322 353-393 (406)
42 1z0k_B FYVE-finger-containing 20.7 1.1E+02 0.0037 23.9 4.1 43 98-142 21-63 (69)
43 3mq9_A Bone marrow stromal ant 20.6 6.7E+02 0.023 25.9 12.0 42 41-82 375-418 (471)
44 3ol1_A Vimentin; structural ge 20.1 4.1E+02 0.014 22.6 11.4 105 9-134 11-117 (119)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=100.00 E-value=1.2e-38 Score=286.90 Aligned_cols=126 Identities=32% Similarity=0.532 Sum_probs=117.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCCchhhhccccchhhchHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 007822 372 AKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNK-IPALVETLVAKTRAWEE 450 (588)
Q Consensus 372 ~~lke~~~~~k~Il~~vekw~~l~~ee~~Le~~~~D~nR~~~~RG~~~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~ 450 (588)
++|+++|.+|++||++|++|..+|.+...||+|++|||||+ |||| +|++|||+|++|+| ||+|++.|+++|.+||.
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~-~Rgg--~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~ 79 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ 79 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh-ccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999 8999 99999999999999 99999999999999999
Q ss_pred HcCCceEEcCccHHHHHH-HHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhcccCC
Q 007822 451 DHGISFTYDGVPLLAMLD-EYAMLRQEREEEKRRMRESKKFHEQQSSEQESIFGS 504 (588)
Q Consensus 451 e~g~~Fl~dG~~ll~~l~-e~~~~r~eKE~ek~~~R~~kk~~~~~~~e~e~~~gs 504 (588)
++|.||+|||++|+++|+ +|+.+|++||+||++ |++||.. ++|+||+|||
T Consensus 80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~~---~~e~e~~~gs 130 (130)
T 3nrx_A 80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNKK---QTETEMLYGS 130 (130)
T ss_dssp HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHCC
T ss_pred HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHhccCC
Confidence 999999999999999998 599999999999999 9999984 8999999998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.78 E-value=8.7 Score=46.23 Aligned_cols=8 Identities=0% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 007822 367 MDNQIAKA 374 (588)
Q Consensus 367 ~E~eI~~l 374 (588)
+..+|..+
T Consensus 1156 L~~~Ieel 1163 (1184)
T 1i84_S 1156 LKTELEDT 1163 (1184)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.77 E-value=15 Score=44.17 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 007822 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (588)
Q Consensus 105 ql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL 141 (588)
.+..+...++.+..++.+-..++.++..++..+-..+
T Consensus 907 ~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444455555555554444433
No 4
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.07 E-value=25 Score=29.63 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=33.7
Q ss_pred CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 220 VQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (588)
Q Consensus 220 ~~~~~lS~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~L 261 (588)
.+++++|.+.+..|+..++.|+.+.....+.+..|-.+|...
T Consensus 4 ~~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 4 EQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999998888899998888765
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.79 E-value=5.1 Score=43.15 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHH
Q 007822 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLD-EYQAQLQELQKEKS 179 (588)
Q Consensus 101 tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~-~l~~~L~~Lq~Ek~ 179 (588)
+|.++...+...|++|+.++++-.+-..+...-...+.+.|....... .+.+-..-++. +|+.+++.|+.+..
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~------~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA------NNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH------HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh------hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999988888888888888888888776532100 00010112222 55555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 007822 180 DRLHKVLEFVSTVHDL 195 (588)
Q Consensus 180 ~R~~kv~~l~~~I~~L 195 (588)
.-+..+..|.+.|.++
T Consensus 128 nQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555444444444443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.85 E-value=1.2e+02 Score=29.43 Aligned_cols=111 Identities=7% Similarity=0.063 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (588)
Q Consensus 53 ~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~ 132 (588)
+..++.....+..+-..|++++.+++.+- ..+..+...++.+.......-.++..+..
T Consensus 17 D~~i~~l~~~~~~lp~el~~le~~~~~l~----------------------~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 17 DKEIDSLEPLIREKRKDLDKALNDKEAKN----------------------KAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665544 46677788888888888888888889999
Q ss_pred HHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007822 133 QIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL 199 (588)
Q Consensus 133 qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~L 199 (588)
.|.+.-..|.... +.+.+..|...+..+..+.......+.++...+..+-..+
T Consensus 75 ri~~~~~~l~~v~--------------~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 75 KIASIQKKMSEIK--------------SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHCS--------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888885321 5678888999999999888888888888888887765554
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.10 E-value=42 Score=34.79 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC
Q 007822 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGN 144 (588)
Q Consensus 100 ~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~ 144 (588)
++|.++...+...+++|+....+-.+...+...-+..+.+.|...
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~ 100 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD 100 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 356777788888888888887776666676666666666666554
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.19 E-value=2.1e+02 Score=29.70 Aligned_cols=18 Identities=6% Similarity=0.074 Sum_probs=8.7
Q ss_pred cCCCHHHHHhHHHhhhcc
Q 007822 265 MDTPSEERRLFDHVTCNI 282 (588)
Q Consensus 265 L~~p~eEr~~F~~~~~~i 282 (588)
|++..+.+..=..+.|++
T Consensus 153 LE~~Id~c~~~C~~sC~~ 170 (390)
T 1deq_A 153 LEVDIDIKIRSCKGSCSR 170 (390)
T ss_pred HHHHHHHHhcccccccch
Confidence 444445554444555544
No 9
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=48.04 E-value=83 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCC-----hHHHHHHHHHHHHHHHHHHHh
Q 007822 322 AFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVE-----PAELLADMDNQIAKAKEEAHS 380 (588)
Q Consensus 322 i~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~-----~e~lL~~~E~eI~~lke~~~~ 380 (588)
|+..+.||+-+-+..++|-.. .+ .|..|..| +...|++++.||.+||+...+
T Consensus 14 IE~~q~eI~~lL~~AkiSl~D-----yI--miKRGS~DmPe~L~~~~~~QideeV~~LKe~Ida 70 (83)
T 1zke_A 14 IEDSQNEIEMLLKLANLSLGD-----FI--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 70 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHH-----HH--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-----Hh--heeccCccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999753 11 24445333 577899999999999987643
No 10
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.95 E-value=40 Score=27.48 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 61 KSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (588)
Q Consensus 61 ~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l 130 (588)
+.-+.|-..|+.+++++..|-..|+.|.|+.. ....-..|..++..+...|+.+ .+|..++..+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~--d~~~~~~l~~~l~~~e~eLe~~----~erWeeLe~~ 85 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQ--PHEQTQKVLADMAAAEQELEQA----FERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS--CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccC--CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 34566788899999999999999999987531 1111223444455555554443 3445555443
No 11
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=47.46 E-value=1.5e+02 Score=26.11 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=43.1
Q ss_pred HHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCCchhhhc
Q 007822 334 ARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNA 413 (588)
Q Consensus 334 ~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ee~~Le~~~~D~nR~~~ 413 (588)
..++++.++-.. ++.....|.....++.+.++.++..+.+....-+.+++.++.....|++ ++.......+.|++
T Consensus 56 r~~G~sL~eIk~---~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~--~~~~~~~~~~~~~~ 130 (142)
T 3gp4_A 56 RRAGLSIEALID---YLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT--HLIPAQEELKDFNV 130 (142)
T ss_dssp HHTTCCHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccCc
Confidence 346666655322 2233333333445666777777777777777777777777766666653 34444455555554
Q ss_pred cc
Q 007822 414 SR 415 (588)
Q Consensus 414 ~R 415 (588)
.|
T Consensus 131 ~~ 132 (142)
T 3gp4_A 131 ER 132 (142)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.81 E-value=1.1e+02 Score=25.61 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLC 196 (588)
Q Consensus 159 lS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~ 196 (588)
+|.+.+..++..++.|+.|...-...+..+-..+-..+
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999887777777777775553
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.17 E-value=1.1e+02 Score=32.91 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEI 332 (588)
Q Consensus 297 ~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeel 332 (588)
...|..++.+|+.-- .....|+..|.+.+.+|..|
T Consensus 116 RRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 455666666666544 33344556666666666554
No 14
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=37.89 E-value=56 Score=23.66 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhccc
Q 007822 465 AMLDEYAMLRQEREEEKRRMRESKKFHEQQSSEQESIF 502 (588)
Q Consensus 465 ~~l~e~~~~r~eKE~ek~~~R~~kk~~~~~~~e~e~~~ 502 (588)
++|++|...|...|+-.+..|.-||.-.. .|.|+.+
T Consensus 4 e~LeqWv~~Rkk~eeler~lrk~kk~iKk--lEdeNPW 39 (50)
T 1a92_A 4 DILEQWVSGRKKLEELERDLRKLKKKIKK--LEEDNPW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCc
Confidence 68899998888877766666655554333 3666554
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.25 E-value=1.8e+02 Score=24.04 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEK-SIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (588)
Q Consensus 52 ~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~-~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l 130 (588)
+...+.+....+..+...|..+...+..+-.. |.+ |.-+ .+-.+.........+...+..+......-..++..+
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCg---s~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCG---RELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTC---CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCC---CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555544221 221 2211 111111112234445555555555544444445555
Q ss_pred HHHHHHHHhHh
Q 007822 131 QSQIQKICGEI 141 (588)
Q Consensus 131 ~~qI~~l~~eL 141 (588)
...+..+-..+
T Consensus 91 ~~~~~~l~~~~ 101 (112)
T 1l8d_A 91 ERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44454444443
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=35.50 E-value=2.4e+02 Score=25.09 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 007822 235 KTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLK 314 (588)
Q Consensus 235 ~~l~~L~e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK 314 (588)
.-..+|...-..-+.++.+|..-|..|= ... +.+++.|+ ...++.+..++..+..-=
T Consensus 14 ~~k~kL~~~sd~LvtkVDDLQD~VE~LR----------kDV--~~RgvrP~-----------~~ql~~v~kdi~~a~~eL 70 (141)
T 3okq_A 14 KSQTELGDLSDTLLSKVDDLQDVIEIMR----------KDV--AERRSQPA-----------KKKLETVSKDLENAQADV 70 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH--HHHCCCCC-----------HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHH--HHcCCCCC-----------HHHHHHHHHHHHHHHHHH
Confidence 3344454555555555666655555442 222 23455543 678888888888776543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007822 315 ASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSA 394 (588)
Q Consensus 315 ~~~mkeli~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l 394 (588)
..|+.+|...+--+..+|..= -+.+ +.--+.|...|.-+..|++-+..-.+.|.+|++.
T Consensus 71 -~~m~~~i~~ekP~WKKiWE~E---------L~~V--------ceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq~--- 129 (141)
T 3okq_A 71 -LKLQEFIDTEKPHWKKTWEAE---------LDKV--------CEEQQFLTLQEELILDLKEDLGKALETFDLIKLC--- 129 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred -HHHHHHHHHcCchhHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 347888888888888888731 1111 1225668888888999999999999999999977
Q ss_pred hHHHHHHHHHcCCchh
Q 007822 395 CEEESWLEDYNRDENR 410 (588)
Q Consensus 395 ~~ee~~Le~~~~D~nR 410 (588)
| ++-.++|+|
T Consensus 130 ~------~eq~k~~~~ 139 (141)
T 3okq_A 130 C------EEQEKNPSR 139 (141)
T ss_dssp C---------------
T ss_pred H------HHHHhcccC
Confidence 3 344577776
No 17
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.35 E-value=2.2e+02 Score=26.41 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (588)
Q Consensus 54 ~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l 130 (588)
+...+....+.++.+.+.+++..|.-...+|..... ..+-+.-..+.|..++|+.+-..++.+|...
T Consensus 92 ~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~----------~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~ 158 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLG----------QSTEELRVRLASHLRKLRKRLLRDADDLQKR 158 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 355566777888888999999998888888865443 2344556788899999999988888876653
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.44 E-value=4.9e+02 Score=27.79 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHHHHHH
Q 007822 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALK 241 (588)
Q Consensus 162 ~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l~~L~ 241 (588)
+.+..++..+..++.+...-...+..+...|......+....+... ...+.+...++.++
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~ 515 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA--------------------RSSDNLNKVFTHLK 515 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS--------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC--------------------CHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 242 EDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEI 321 (588)
Q Consensus 242 e~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkel 321 (588)
+..+....+++.....+.+.=..++-=..++.......... .+.+..+..|...+.+-.++.+.++
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~--------------~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK--------------RAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh--------------hhHHHHHHHHHHHHHHHHHHHHHHh
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.07 E-value=2.4e+02 Score=24.02 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhHhCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007822 15 TCSSLLHKLQEIWDEVGENDEERDKMLL--QIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALG 85 (588)
Q Consensus 15 ~c~~ll~eL~~IWdeIG~~e~er~~~l~--~le~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLg 85 (588)
.|..+|..-+.-.+++......++..+- ++-+.-.++|+.=+.-++..|.++...+..+..++..|...+.
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555666667777777665555544221 1122346899999999999999999999999999999887654
No 20
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=31.80 E-value=79 Score=22.92 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFAR 335 (588)
Q Consensus 297 ~~~I~~~e~Ev~RLe~lK~~~mkeli~k~r~eLeelw~~ 335 (588)
.+-|-.++.|+++|+..|...+..+-...+.+|...-|.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 345778999999999999999999988888888876653
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.19 E-value=2.5e+02 Score=37.46 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007822 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (588)
Q Consensus 100 ~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~ 179 (588)
.|+++.++.+...++..+.+..+-..++.++..++..+-++......-.. ....+......+|+.=...+..|-.|+.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~--~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE--QIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 79999999999998888888888888888888888888766543210000 0001123466778888888888888887
Q ss_pred HHHHHHHHHHHHHHHH
Q 007822 180 DRLHKVLEFVSTVHDL 195 (588)
Q Consensus 180 ~R~~kv~~l~~~I~~L 195 (588)
+=.+.+..+...+..|
T Consensus 2088 RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 6555555554444443
No 22
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=29.50 E-value=2.3e+02 Score=23.18 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHHHH
Q 007822 31 GENDEERDKMLLQIEK 46 (588)
Q Consensus 31 G~~e~er~~~l~~le~ 46 (588)
+.+.++|...+.+++.
T Consensus 26 ~~~ge~Rk~~i~~ie~ 41 (97)
T 3onj_A 26 SQPLSQRNTTLKHVEQ 41 (97)
T ss_dssp GSCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHH
Confidence 3455666666655543
No 23
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.88 E-value=56 Score=24.05 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHH-HhhhHHHHHHH
Q 007822 363 LLADMDNQIAKAKEEA-HSRKEILDKVE 389 (588)
Q Consensus 363 lL~~~E~eI~~lke~~-~~~k~Il~~ve 389 (588)
|=..||.||..+...| ..|+||++.|+
T Consensus 22 Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 22 LDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 3357899999988766 57899999986
No 24
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.48 E-value=1.8e+02 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.5
Q ss_pred hchHHHHHHHHhhh-hHHHHH
Q 007822 420 NLKRAEKARILVNK-IPALVE 439 (588)
Q Consensus 420 ~LlreEK~Rk~i~K-lPkl~~ 439 (588)
.|-.|.|+|+++.+ +|++..
T Consensus 32 ~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 32 SLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 46677799999999 899855
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.78 E-value=5.5e+02 Score=34.31 Aligned_cols=94 Identities=9% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCccCCCCHHHHHHHHHHH
Q 007822 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTV 237 (588)
Q Consensus 158 dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L~~~Lgid~~~~v~evhpsl~d~~~~~~~~lS~~~L~~L~~~l 237 (588)
.|-.++|.+++..+...+.+...-.+++.++-..|..|-..+.. .+.+.. .| ..........|++-...+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~----~~~ek~-~L-----~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT----LIRETE-QI-----KTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HH-----HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HH-----HHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666665555555555555555544431 110000 00 001111235556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 238 LALKEDKKQRLHKLQELATQLIDL 261 (588)
Q Consensus 238 ~~L~e~K~~R~~ki~~l~~~l~~L 261 (588)
..|..+|..=.+.++.+..++..|
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHhc
Confidence 666666655444445444444433
No 26
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=26.24 E-value=67 Score=23.35 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 100 ~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
-||++|...|+..+.+.+ +..|..++..|..-+..|-.++.
T Consensus 4 dPL~EQ~~~I~~~I~qAk--~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 4 SPLAQQIKNIHSFIHQAK--AAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp SHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHH
Confidence 489999999999999876 56788888888888888877764
No 27
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=25.97 E-value=83 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 007822 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (588)
Q Consensus 100 ~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL 141 (588)
-||.+|...|+..+.+.+ +..|+.++..|..-+..|-.++
T Consensus 5 dPL~EQ~~~I~~~I~qAk--~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 5 SPLLQQIHNITSFIRQAK--AAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHH
Confidence 489999999999999886 4567777777777766666554
No 28
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=24.85 E-value=1.1e+02 Score=19.32 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 231 ARLAKTVLALKEDKKQRLHKLQELATQL 258 (588)
Q Consensus 231 ~~L~~~l~~L~e~K~~R~~ki~~l~~~l 258 (588)
+.|...+..|+.+-++...+++++..++
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788887777777777776654
No 29
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=24.61 E-value=76 Score=32.14 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=34.3
Q ss_pred CHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (588)
Q Consensus 268 p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli 322 (588)
|.+||+.|......+ ...|+.++.+++.|+++|...|.+++
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578899998876533 56889999999999999999998876
No 30
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.02 E-value=94 Score=19.21 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007822 60 AKSRAQLLQALSDAKIELASL 80 (588)
Q Consensus 60 ~~~r~~L~q~I~~~~~El~~L 80 (588)
...-++|.|+|+.++-|++.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 344567888888888888765
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.67 E-value=4.1e+02 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 232 RLAKTVLALKEDKKQRLHKLQELA 255 (588)
Q Consensus 232 ~L~~~l~~L~e~K~~R~~ki~~l~ 255 (588)
.|+..+..|+.++....+++.++-
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 32
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.48 E-value=2.5e+02 Score=22.53 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007822 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALG 85 (588)
Q Consensus 52 ~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLg 85 (588)
++-+|.+.++.|-+--..+..-++|++.|-..|.
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556777777776666666666666666654443
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.27 E-value=3.2e+02 Score=22.57 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWN 263 (588)
Q Consensus 227 ~~~L~~L~~~l~~L~e~K~~R~~ki~~l~~~l~~LW~ 263 (588)
++.+..|...+..++..-..-.+++..+..++.+|-.
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555555555555555555544
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.83 E-value=1.4e+02 Score=21.99 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 112 ALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 112 ~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
-++.|+.+..+-..++..|..++..+|..|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555666667777777777665
No 35
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=22.13 E-value=4.3e+02 Score=23.68 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 58 QAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (588)
Q Consensus 58 e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l 137 (588)
+......++-.+++.++-+...+..++.-.... ..+....+++..++.+++.=+ .+|......+..+++.+
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~------~~~p~~~~qi~~iq~q~~~ek---~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVVDQVRRQSAN------PLDPRVQEQVANIQQQVAGKR---SELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCChhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 334455556666677777777777766632211 112345566777777666554 44555555555555555
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.11 E-value=1e+03 Score=28.05 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007822 229 TLARLAKTVLALKEDKKQRL 248 (588)
Q Consensus 229 ~L~~L~~~l~~L~e~K~~R~ 248 (588)
.+..|+++...|+.+.....
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 37
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.09 E-value=2.7e+02 Score=22.15 Aligned_cols=65 Identities=5% Similarity=0.085 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCcchHHHHHHhHhhhcCCCC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Q 007822 329 LEEIFARAHIEIDPVAAREKIMTLIDSGNV-EPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACE 396 (588)
Q Consensus 329 Leelw~~~~~~~e~r~~~~~~~~~i~s~~~-~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ 396 (588)
+-...+.++||.++-..+ +.....+.. ...++.+.++.++..+.+....-+.+.+.++.....|.
T Consensus 8 ~I~~lr~lGfsL~eIk~~---l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 8 FIRHARQLGFSLESIREL---LSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHTTCCHHHHHHH---HHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCHHHHHHH---HHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466689999875433 333333322 34678888888888888888888888888877655443
No 38
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.87 E-value=5.3e+02 Score=24.66 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (588)
Q Consensus 53 ~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~ 132 (588)
+..++..+....++-..|+...+.+...-..|+.-.. + ..+.++...++.+..+....-.++.++..
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~------~-------kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS------E-------RELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS------S-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666643111 1 15677777777777777777777777777
Q ss_pred HHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 133 QIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTV 192 (588)
Q Consensus 133 qI~~l~~eL~~~~~~~~~~~~v~~~dlS~~~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I 192 (588)
++..+-..+.. ....+..++..+...+.+....+..+..-...+
T Consensus 119 ~ie~~~~~l~~----------------~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 119 EIKRKSEKQED----------------LKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666542 345666777777777777766666554444433
No 39
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.57 E-value=1.8e+02 Score=19.24 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 61 KSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 61 ~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
.....|+..+..++.|++.|..-||+
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 34445677777778888888877775
No 40
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.55 E-value=1.6e+02 Score=21.66 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007822 56 VEQAAKSRAQLLQALSDAKIELASLLSALG 85 (588)
Q Consensus 56 V~e~~~~r~~L~q~I~~~~~El~~L~~eLg 85 (588)
|+......+.|.+.+..+.++++.+++.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566677778888888888887765
No 41
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=20.92 E-value=97 Score=31.56 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=33.6
Q ss_pred CHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (588)
Q Consensus 268 p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli 322 (588)
|.+||+.|......+ ...|+..+.+++.|+++|...|.+++
T Consensus 353 pl~eQ~~I~~~l~~i--------------d~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899998876432 56789999999999999999988875
No 42
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.72 E-value=1.1e+02 Score=23.93 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 007822 98 TSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (588)
Q Consensus 98 ~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI~~l~~eL~ 142 (588)
.+-||.+|...|+..+.+.+ +..|..++.-|..-+..|-.++.
T Consensus 21 ~~dPL~EQ~~~I~~yI~qAk--~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 21 DSDPLLQQIHNITSFIRQAK--AAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp CSSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999886 45677787777777777766553
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.64 E-value=6.7e+02 Score=25.87 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 41 LLQIEKECLDVYKRKV--EQAAKSRAQLLQALSDAKIELASLLS 82 (588)
Q Consensus 41 l~~le~e~~~v~~~~V--~e~~~~r~~L~q~I~~~~~El~~L~~ 82 (588)
+.++.+.+..++.+.. .++.+..+.|.+.|.+.++-+..+..
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444455433 35677777788888888888777654
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.05 E-value=4.1e+02 Score=22.60 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=54.6
Q ss_pred CCcchhhHHHHHHHHHHHHhHhCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007822 9 PLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIE--KECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (588)
Q Consensus 9 ~~~~~~~c~~ll~eL~~IWdeIG~~e~er~~~l~~le--~e~~~v~~~~V~e~~~~r~~L~q~I~~~~~El~~L~~eLge 86 (588)
|..........+..|+.-.+.++. ++.++..++. +...+-|+.+.+.+-..|..+-..|..++..+....
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~---e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~----- 82 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTN---DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS----- 82 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH-----
Confidence 333455555556666666665554 3444333332 123445777888877777666555555544443322
Q ss_pred CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 87 KSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (588)
Q Consensus 87 ~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr~~K~eR~~ef~~l~~qI 134 (588)
.. .+-|-.++..|...+.-|++-.++ ++.+++++|
T Consensus 83 --l~--------r~dLE~~iesL~eEl~FLKk~hee---El~eLq~qi 117 (119)
T 3ol1_A 83 --LA--------RLDLERKVESLQEEIAFLKKLHEE---EIQELQAQI 117 (119)
T ss_dssp --HH--------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCC
T ss_pred --HH--------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 11 122444566666666666665543 555555544
Done!