Query 007822
Match_columns 588
No_of_seqs 253 out of 509
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 11:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007822.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007822hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zkea1 a.30.6.1 (A:1-79) Hypo 43.1 45 0.0033 24.4 7.2 52 322-380 12-68 (79)
2 d1yf2a2 d.287.1.2 (A:221-425) 42.0 15 0.0011 30.9 5.3 41 268-322 157-197 (205)
3 d1ydxa2 d.287.1.2 (A:194-374) 36.9 19 0.0014 30.0 5.1 41 268-322 137-177 (181)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 34.6 22 0.0016 29.8 5.2 41 269-323 143-183 (193)
5 d1gm5a1 a.24.21.1 (A:7-105) Re 32.7 10 0.00076 29.6 2.3 48 376-444 45-92 (99)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.3 98 0.0072 24.5 8.9 33 163-195 9-41 (133)
7 d2q37a1 a.288.1.1 (A:6-160) OH 30.8 60 0.0044 27.2 7.3 100 381-483 27-136 (155)
8 d1yf2a1 d.287.1.2 (A:1-220) Bi 29.1 40 0.0029 28.8 6.2 42 268-323 167-208 (220)
9 d1q06a_ a.6.1.3 (A:) Transcrip 24.9 1.5E+02 0.011 23.1 8.7 61 333-396 53-113 (127)
10 d2o70a1 a.288.1.1 (A:2-166) OH 23.6 88 0.0064 26.2 7.2 100 382-482 41-147 (165)
11 d1i4da_ a.238.1.2 (A:) Arfapti 21.6 2E+02 0.014 23.4 11.8 37 360-396 78-115 (200)
12 d2o8ia1 a.288.1.1 (A:1-165) Hy 21.2 1.1E+02 0.0079 25.6 7.3 62 422-483 80-145 (165)
No 1
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=43.06 E-value=45 Score=24.36 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHhHhhhcCCCCC-----hHHHHHHHHHHHHHHHHHHHh
Q 007822 322 AFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVE-----PAELLADMDNQIAKAKEEAHS 380 (588)
Q Consensus 322 i~k~r~eLeelw~~~~~~~e~r~~~~~~~~~i~s~~~~-----~e~lL~~~E~eI~~lke~~~~ 380 (588)
|+..|.||+-+-+...+|-.. .+ .|..|..| ....|++++.||.+||+...+
T Consensus 12 IE~~q~eI~~lL~~AkiS~vD-----yI--mIKRGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 12 IEDSQNEIEMLLKLANLSLGD-----FI--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHTCCHHH-----HH--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhH-----hh--eeecCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999888753 11 24445333 578899999999999998654
No 2
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=42.05 E-value=15 Score=30.94 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=33.5
Q ss_pred CHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (588)
Q Consensus 268 p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli 322 (588)
|.+||+.|......+ ...|+.++..++.|+++|...|..++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888776532 57889999999999999999988876
No 3
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=36.89 E-value=19 Score=30.03 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=34.1
Q ss_pred CHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (588)
Q Consensus 268 p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli 322 (588)
|.++++.|......+ .+.|+..+.+++.|+++|...|++++
T Consensus 137 ~l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899898887543 67899999999999999999988764
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=34.65 E-value=22 Score=29.81 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=34.3
Q ss_pred HHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (588)
Q Consensus 269 ~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~ 323 (588)
.+||+.+......+ ...|+.++.+++.|+++|...|++++.
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67788888776432 678999999999999999999999874
No 5
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=32.73 E-value=10 Score=29.57 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=33.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCCchhhhccccchhhchHHHHHHHHhhhhHHHHHHHHHH
Q 007822 376 EEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVETLVAK 444 (588)
Q Consensus 376 e~~~~~k~Il~~vekw~~l~~ee~~Le~~~~D~nR~~~~RG~~~~LlreEK~Rk~i~KlPkl~~~L~~~ 444 (588)
+....+.+|++++.++-+-+. + =+ + +.+|++++||++.|.|++.++..
T Consensus 45 DpLlen~el~~kLqeF~~Yi~------~------------~~--~-Lp~eR~~kRvk~~~gMIerfR~~ 92 (99)
T d1gm5a1 45 DPLLENKDLEEKLQAFLDYVK------E------------IP--N-LPEARKRYRIQKSLEMIEKLRSW 92 (99)
T ss_dssp CGGGGCHHHHHHHHHHHHHHT------T------------SS--S-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhcCHHHHHHHHHHHHHHH------H------------hc--c-CCHHHHHHHHhccHHHHHHHHHH
Confidence 556667777777776632221 1 11 2 56999999999999999988754
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.34 E-value=98 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 163 KLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (588)
Q Consensus 163 ~L~~l~~~L~~Lq~Ek~~R~~kv~~l~~~I~~L 195 (588)
.++.|+.+++.|+.....-...+.++...+..|
T Consensus 9 ~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L 41 (133)
T d1fxkc_ 9 QLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555555555444443
No 7
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.79 E-value=60 Score=27.22 Aligned_cols=100 Identities=13% Similarity=0.235 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHcCCchhhhccc------cchhhchHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHcC
Q 007822 381 RKEILDKVEKWMSACEEESWLEDYNRDENRYNASR------GAHLNLKRAEKARILVNK-IPALVETLVAKTRAWEEDHG 453 (588)
Q Consensus 381 ~k~Il~~vekw~~l~~ee~~Le~~~~D~nR~~~~R------G~~~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g 453 (588)
...++..+..+...+.+..|++-..--|. +- +| |........|... -+.. =|...+.|...=.+|++.+|
T Consensus 27 ~~~L~~a~~~~~~~~~~~~~l~~l~aHP~-Lg-~~~~~~~~~~lt~~S~~EQs~-al~~~~~~~~~~l~~lN~~Y~~kFG 103 (155)
T d2q37a1 27 QEAIYTARDIWFNQVNVTDWLEAFSAHPQ-IG-NTPSPSINSDFARRSVSEQST-AFATTSASALQELAEWNVLYKKKFG 103 (155)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTSCC-TT-SCCC-------------TTHH-HHTSCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcCcc-cc-ccccccccchhhHHhHHHHHh-hhccCCHHHHHHHHHHHHHHHHHcC
Confidence 34445555555555667778888777665 21 22 1111222334332 4777 68899999999999999999
Q ss_pred CceEE--cCccHHHHHHH-HHHHHHHHHHHHHH
Q 007822 454 ISFTY--DGVPLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 454 ~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
-||.| .|..--+||.. ...+....+.|...
T Consensus 104 fpFIi~v~g~s~~eIL~~l~~Rl~n~~~~E~~~ 136 (155)
T d2q37a1 104 FIFIICASGRTHAEMLHALKERYENRPIVELEI 136 (155)
T ss_dssp SCCCCCCSSCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 99987 88888888885 33344455555443
No 8
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=29.14 E-value=40 Score=28.76 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=34.6
Q ss_pred CHHHHHhHHHhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007822 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (588)
Q Consensus 268 p~eEr~~F~~~~~~i~~s~~e~~~~~~lS~~~I~~~e~Ev~RLe~lK~~~mkeli~ 323 (588)
|.++|+.|......+ .+.|+..+.+++.|+++|...|.+++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677888888876533 568899999999999999999988874
No 9
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=24.93 E-value=1.5e+02 Score=23.12 Aligned_cols=61 Identities=10% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHcCCCcchHHHHHHhHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Q 007822 333 FARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACE 396 (588)
Q Consensus 333 w~~~~~~~e~r~~~~~~~~~i~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ 396 (588)
+..++|+.++-. .++...+.+.....+.....+..+..+++..+..+...+.+..+...|.
T Consensus 53 lr~~G~sl~eI~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~l~~~~~ 113 (127)
T d1q06a_ 53 ARQVGFNLEESG---ELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACP 113 (127)
T ss_dssp HHHTTCCHHHHH---HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHH---HHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566888887643 3344455555566777888888888888777777777777777666553
No 10
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=23.60 E-value=88 Score=26.22 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHcCCch---hhhccccchhhchHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHcCCceE
Q 007822 382 KEILDKVEKWMSACEEESWLEDYNRDEN---RYNASRGAHLNLKRAEKARILVNK-IPALVETLVAKTRAWEEDHGISFT 457 (588)
Q Consensus 382 k~Il~~vekw~~l~~ee~~Le~~~~D~n---R~~~~RG~~~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl 457 (588)
..+.+.+..-...+.++.|++--.--|. +.. ..|....-...|....-+.. =+...+.|...=.+|++.+|-||.
T Consensus 41 ~~L~~a~~~~~~~~~~~~~~~~l~~HP~Lg~~~~-~~~~lt~~s~~eq~~agl~~~~~~e~~~l~~lN~~Y~~kFGfpFI 119 (165)
T d2o70a1 41 ADIEARISEFIHSLPDSGKEGILRCHPDLAGRDL-QSGTLTPESQEEQSQAGMTTLDSAEIVHMYRLNSEYKERFGFPFV 119 (165)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTSCCTTSHHH-HHTCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHcCcchhHHHHHhCchhhhchh-hhhhhhhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHcCCeeE
Confidence 3344444444444456666666555553 111 11111122345666666777 478889999999999999999998
Q ss_pred E--cCccHHHHHHH-HHHHHHHHHHHHH
Q 007822 458 Y--DGVPLLAMLDE-YAMLRQEREEEKR 482 (588)
Q Consensus 458 ~--dG~~ll~~l~e-~~~~r~eKE~ek~ 482 (588)
+ .|..--++|.. ...+....+.|.+
T Consensus 120 i~v~g~s~~~Il~~l~~Rl~n~~~~E~~ 147 (165)
T d2o70a1 120 ICARLNNKADIVRQLSERLKNRRTAELE 147 (165)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred EeeCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 7 89998888886 3344445555544
No 11
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.57 E-value=2e+02 Score=23.38 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhH
Q 007822 360 PAELLADMDNQIAKAKEEAHS-RKEILDKVEKWMSACE 396 (588)
Q Consensus 360 ~e~lL~~~E~eI~~lke~~~~-~k~Il~~vekw~~l~~ 396 (588)
.+.++......+..+..++.. -++|.+.+.+|..++.
T Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~ 115 (200)
T d1i4da_ 78 GETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARL 115 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666677777777777665 4778888888855443
No 12
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.20 E-value=1.1e+02 Score=25.60 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHcCCceEE--cCccHHHHHHH-HHHHHHHHHHHHHH
Q 007822 422 KRAEKARILVNK-IPALVETLVAKTRAWEEDHGISFTY--DGVPLLAMLDE-YAMLRQEREEEKRR 483 (588)
Q Consensus 422 lreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~~ 483 (588)
-..|....-+.. -|...+.|...=.+|++.+|-||.+ .|..--++|.. +..+....+.|...
T Consensus 80 S~~Eq~~agl~~~~~~e~~~l~~lN~~Y~~kFGfpFIi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~ 145 (165)
T d2o8ia1 80 SRNEQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFAT 145 (165)
T ss_dssp --------CTTSCCHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHHH
T ss_pred hhhhhhhccccccCHHHHHHHHHHHHHHHHHcCCeeEEeeCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 345555556666 4777788999999999999999987 89998888886 44444455555443
Done!