BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007823
(588 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23826|K125_TOBAC 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1
SV=1
Length = 1006
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/588 (61%), Positives = 453/588 (77%)
Query: 1 MGVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYA 60
MGV +E HQKQ EELQ ++D QV+QCSDLT KL++T+ L+QT KLL TEEQL++ QY
Sbjct: 418 MGVSIENHQKQFEELQSRHDSQVQQCSDLTCKLDVTQKQLNQTSKLLAYTEEQLRQSQYT 477
Query: 61 LKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENF 120
LKE+DFIISEQKKAENAL HQAC LR +LEK++Q+N LFQKI REDKL+ DNRS+V NF
Sbjct: 478 LKERDFIISEQKKAENALAHQACVLRADLEKSIQENASLFQKIAREDKLSTDNRSLVNNF 537
Query: 121 QVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCS 180
Q ELA+Q+GSL + S C+Q EHL+ VEK CH+ L H+KAV+DLK+K+ +S ALY S
Sbjct: 538 QAELAKQLGSLSSTLATSVCRQTEHLQCVEKFCHNFLDSHDKAVLDLKRKINSSMALYIS 597
Query: 181 HMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQ 240
H EA+QNVVRLHKA SNA LEE+S ASSNS S KEFL +EA EA S+++ LQ+TLST Q
Sbjct: 598 HFEAMQNVVRLHKATSNATLEEVSTLASSNSISTKEFLDAEAVEANSMFDELQSTLSTHQ 657
Query: 241 GEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADF 300
GEMA FARE+RQRF + E +I+ F KLL+ESK LE +A DE Q SIA+F
Sbjct: 658 GEMAHFARELRQRFNDSTEHLTNISAIIQRFFDKLLDESKRLEKHATTVDEIQTNSIAEF 717
Query: 301 QKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVE 360
+KAYE+Q+KSD EKLIADVTSLVS+HMRRQ ELV ARLVD RE ++ FLDGH SS+E
Sbjct: 718 EKAYEEQSKSDAEKLIADVTSLVSNHMRRQKELVGARLVDLRETVSGNRTFLDGHVSSME 777
Query: 361 GITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESV 420
GITTDAKRKWQ F MQA+ + K+ AD S+AKHCRME L+Q+CV++ E+A W+ T+E V
Sbjct: 778 GITTDAKRKWQDFYMQAEGETKENADFSAAKHCRMESLMQKCVSTAETALKRWQSTHELV 837
Query: 421 NEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQA 480
N+M ++HV +M S+ RN +NEQH + D+ R + EE+V ++SED ++ I S S +E+
Sbjct: 838 NDMGNQHVLTMHSVVRNICDNNEQHVTDFDSTRESAEEDVKRNSEDIIKSIDSLSGEERG 897
Query: 481 SIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEHTGTTPTRCESEVP 540
SI+ VLD AH +T+++ ++ H QS SI++ A ETFQQ+YMDYE TG TP R E +VP
Sbjct: 898 SISGVLDTTSAHSETLDVLKKDHCMQSTSIEQIALETFQQKYMDYEPTGATPIRSEPDVP 957
Query: 541 SKGTIESLRAMPMETLLEEFRENNSYESFDVKELKPSLIPRSPLSQIN 588
SK TIESLRAMPME LLEEFRENNS+ESF VKE+KPSLIPRSP SQIN
Sbjct: 958 SKVTIESLRAMPMEVLLEEFRENNSFESFQVKEVKPSLIPRSPFSQIN 1005
>sp|P82266|K125_ARATH Probable 125 kDa kinesin-related protein OS=Arabidopsis thaliana
GN=At2g36200 PE=2 SV=2
Length = 1009
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/588 (60%), Positives = 465/588 (79%)
Query: 1 MGVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYA 60
MG Q+E +QKQLEELQDKY QVR+CSDLTTKL++TE NL QT K+L +T E+LKK QYA
Sbjct: 422 MGGQIENYQKQLEELQDKYVGQVRECSDLTTKLDITEKNLSQTCKVLASTNEELKKSQYA 481
Query: 61 LKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENF 120
+KEKDFIISEQKK+EN L QAC L+ NLEKA +DN L QKIGREDKL+ADNR VV+N+
Sbjct: 482 MKEKDFIISEQKKSENVLVQQACILQSNLEKATKDNSSLHQKIGREDKLSADNRKVVDNY 541
Query: 121 QVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCS 180
QVEL++QI +L + V QQN HL+ V KL S L H KA++++KKKV ASR LY S
Sbjct: 542 QVELSEQISNLFNRVASCLSQQNVHLQGVNKLSQSRLEAHNKAILEMKKKVKASRDLYSS 601
Query: 181 HMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQ 240
H+EAVQNVVRLHKA +NA LEE+SA +S++ SI EFLAS +S+++ LQ+ LS+ Q
Sbjct: 602 HLEAVQNVVRLHKANANACLEEVSALTTSSACSIDEFLASGDETTSSLFDELQSALSSHQ 661
Query: 241 GEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADF 300
GEMA+FARE+RQRF T+E+T++++EYT+ F QKL+EESK+ E A +A+++Q+ SI DF
Sbjct: 662 GEMALFARELRQRFHTTMEQTQEMSEYTSTFFQKLMEESKNAETRAAEANDSQINSIIDF 721
Query: 301 QKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVE 360
QK YE Q+KSDT+KLIAD+T+LVSSH+RRQ ELV++RL +F++ S+K FLD H S+V
Sbjct: 722 QKTYEAQSKSDTDKLIADLTNLVSSHIRRQHELVDSRLHNFKDAVSSNKTFLDEHVSAVN 781
Query: 361 GITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESV 420
+T DAKRKW+ F+MQA+N+A++GAD S+AKHCRMELLLQ+ V ESAF H K T+ES+
Sbjct: 782 NLTKDAKRKWETFSMQAENEAREGADFSAAKHCRMELLLQQSVGHAESAFKHCKITHESL 841
Query: 421 NEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQA 480
EM SK V+ + SL R+A SNEQHD EVD+AR A E++V K+S+D +Q I SE E+A
Sbjct: 842 KEMTSKQVTDVSSLVRSACDSNEQHDAEVDSARTAAEKDVTKNSDDIIQQIERMSEDEKA 901
Query: 481 SIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEHTGTTPTRCESEVP 540
S++++L++V++HEKT+ F++ Q+ I++KAQETFQQ+YM+YE TG TPT+ E E+P
Sbjct: 902 SVSKILENVRSHEKTLESFQQDQCCQARCIEDKAQETFQQQYMEYEPTGATPTKNEPEIP 961
Query: 541 SKGTIESLRAMPMETLLEEFRENNSYESFDVKELKPSLIPRSPLSQIN 588
+K TIESLRAMP+ETL+EEFRENNSYESF KE KP + RSPLSQ+N
Sbjct: 962 TKATIESLRAMPIETLVEEFRENNSYESFATKETKPQQLTRSPLSQVN 1009
>sp|Q92614|MY18A_HUMAN Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A PE=1 SV=3
Length = 2054
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 278 ESKSLENYAVQAD-ENQMKSIADFQKAYEDQTKSD-TEKLIADVTSLVSSHMRRQTEL-- 333
ES N ++QAD + K I D Q A ED+ +SD E LI + +V+ + +R+ +L
Sbjct: 1909 ESLEAANQSLQADLKLAFKRIGDLQAAIEDEMESDENEDLINSLQDMVTKYQKRKNKLEG 1968
Query: 334 ---VEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRK-------WQAFAMQADNDAKD 383
V++ L D R + V S +L + + + D K W++ A +D D
Sbjct: 1969 DSDVDSELED-RVDGVKS--WLSKNKGPSKAASDDGSLKSSSPTSYWKSLAPDRSDDEHD 2025
Query: 384 GADHSS 389
D++S
Sbjct: 2026 PLDNTS 2031
>sp|O26640|RAD50_METTH DNA double-strand break repair Rad50 ATPase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rad50 PE=3 SV=1
Length = 837
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 42/252 (16%)
Query: 207 ASSNSESIKEFLASEAREAASIYENLQTTLS-TQQGEMAIFAREMRQRFQVTIERTKDIA 265
A+SNS S+K + E ++Y L+ S QQGE+ I + + ++ E ++
Sbjct: 61 ATSNSGSVKLTFTVDG-EEYTVYRELKRGSSGVQQGELYIRKQGVVKKLSAK-ELKAEVL 118
Query: 266 EYTNGFLQKLLEESKS-LENYAVQADENQMKSIAD---------FQKAYEDQTKSDTEKL 315
E G+ + L ++S + YAV + QMKSI + +KA+ D EK
Sbjct: 119 EIL-GYREPLNPRARSRIYRYAVFTPQEQMKSIIEAPKNDRLERLRKAF------DLEKY 171
Query: 316 --IADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAF 373
AD +LVS +RR++E +E R D L+ +EG+ + + K ++
Sbjct: 172 SRAADNANLVSRRIRRESESLEDRSYD-----------LEDKKRELEGLLGEKE-KLESE 219
Query: 374 AMQADNDAKDGADHSSAK-HCRMELLLQECVNSGESAFGHWKRTYESV-NEMESKHVSSM 431
Q D+D +G + AK ME+L +E N ESA +R ES+ NE+E+ SS
Sbjct: 220 KKQLDSDI-EGIEAEIAKLKSEMEVLQREK-NRIESA----EREIESLQNEIETLRSSSE 273
Query: 432 ISLTRNASYSNE 443
+ RN S E
Sbjct: 274 RLMERNRSIEEE 285
>sp|P34562|YNP9_CAEEL GRIP and coiled-coil domain-containing protein T05G5.9
OS=Caenorhabditis elegans GN=T05G5.9 PE=4 SV=3
Length = 660
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 37 ESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDN 96
ES +DQ + L + E L K Q + E D ++ KK +N + ++EK ++N
Sbjct: 134 ESKVDQLNRALRDKTEALIKAQEVITENDLEVNNMKKEKN-------NTKSSIEKLTEEN 186
Query: 97 VLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHS 155
L + + E +AD F+ L + C IV+LS Q NE L K+ S
Sbjct: 187 TRLTKALQDEKIKSAD-------FEARLR---SAECRIVELSDQQGNEKLGLARKMAES 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,846,931
Number of Sequences: 539616
Number of extensions: 7104146
Number of successful extensions: 27223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 724
Number of HSP's that attempted gapping in prelim test: 25539
Number of HSP's gapped (non-prelim): 2052
length of query: 588
length of database: 191,569,459
effective HSP length: 123
effective length of query: 465
effective length of database: 125,196,691
effective search space: 58216461315
effective search space used: 58216461315
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)