Query 007823
Match_columns 588
No_of_seqs 120 out of 171
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 7.4E-52 1.6E-56 466.7 52.5 587 1-588 453-1040(1041)
2 PF13931 Microtub_bind: Kinesi 99.3 5.2E-13 1.1E-17 121.8 3.5 42 521-566 1-42 (143)
3 KOG0243 Kinesin-like protein [ 99.3 1E-05 2.2E-10 94.1 57.8 227 314-566 718-956 (1041)
4 KOG0994 Extracellular matrix g 96.9 1.5 3.3E-05 52.3 49.4 43 413-456 1656-1698(1758)
5 PF00038 Filament: Intermediat 96.1 2.2 4.8E-05 44.6 31.1 59 131-192 167-225 (312)
6 KOG0161 Myosin class II heavy 95.8 9.3 0.0002 49.2 62.9 36 10-45 908-943 (1930)
7 KOG0161 Myosin class II heavy 95.8 9.6 0.00021 49.1 64.5 54 207-261 1268-1321(1930)
8 KOG0994 Extracellular matrix g 95.6 7.6 0.00016 46.8 44.7 33 160-194 1279-1311(1758)
9 PF01442 Apolipoprotein: Apoli 95.2 3.1 6.7E-05 39.6 26.8 20 120-139 43-62 (202)
10 COG1196 Smc Chromosome segrega 94.3 19 0.00041 44.9 48.5 56 7-62 671-726 (1163)
11 KOG0977 Nuclear envelope prote 94.2 12 0.00027 42.1 31.2 98 11-108 93-190 (546)
12 TIGR00606 rad50 rad50. This fa 93.2 31 0.00067 43.6 55.0 22 413-435 1110-1131(1311)
13 KOG0250 DNA repair protein RAD 92.1 34 0.00074 41.4 39.9 177 29-257 212-388 (1074)
14 PF07464 ApoLp-III: Apolipopho 91.7 3.5 7.6E-05 39.0 12.2 133 111-243 3-148 (155)
15 TIGR02169 SMC_prok_A chromosom 91.5 43 0.00093 41.3 48.7 36 11-46 675-710 (1164)
16 PRK11637 AmiB activator; Provi 91.1 28 0.0006 38.3 28.0 56 7-62 51-106 (428)
17 TIGR02168 SMC_prok_B chromosom 89.9 57 0.0012 40.1 48.2 9 11-19 678-686 (1179)
18 KOG4674 Uncharacterized conser 89.9 71 0.0015 41.1 60.1 102 88-193 760-868 (1822)
19 KOG0996 Structural maintenance 89.8 57 0.0012 39.9 42.5 84 9-92 506-589 (1293)
20 PF13949 ALIX_LYPXL_bnd: ALIX 89.6 27 0.00059 36.0 28.4 44 116-160 191-234 (296)
21 PF05667 DUF812: Protein of un 89.2 48 0.001 38.2 33.8 77 16-93 320-396 (594)
22 PRK13895 conjugal transfer pro 88.1 22 0.00047 33.0 15.0 77 132-208 34-116 (144)
23 KOG4674 Uncharacterized conser 87.7 98 0.0021 40.0 62.4 147 218-373 701-860 (1822)
24 PRK04863 mukB cell division pr 87.3 1E+02 0.0022 39.6 41.5 69 218-286 556-633 (1486)
25 PF04394 DUF536: Protein of un 83.0 4.1 9E-05 30.3 5.5 41 3-43 3-43 (45)
26 PF07888 CALCOCO1: Calcium bin 82.7 93 0.002 35.3 43.1 13 167-179 288-300 (546)
27 TIGR00606 rad50 rad50. This fa 82.2 1.5E+02 0.0033 37.5 60.1 15 508-522 1125-1139(1311)
28 PRK11637 AmiB activator; Provi 81.6 88 0.0019 34.4 28.6 14 10-23 47-60 (428)
29 PF06705 SF-assemblin: SF-asse 79.3 75 0.0016 32.2 33.7 112 183-301 70-181 (247)
30 KOG0976 Rho/Rac1-interacting s 78.4 1.5E+02 0.0032 35.1 46.5 95 2-103 98-203 (1265)
31 PF14915 CCDC144C: CCDC144C pr 77.5 97 0.0021 32.4 39.3 195 65-259 41-246 (305)
32 PF05667 DUF812: Protein of un 75.7 1.6E+02 0.0035 34.0 31.0 94 5-102 323-416 (594)
33 PRK10361 DNA recombination pro 75.5 1.4E+02 0.0031 33.4 23.4 35 160-194 163-197 (475)
34 TIGR03185 DNA_S_dndD DNA sulfu 75.4 1.7E+02 0.0037 34.1 37.8 73 27-102 205-277 (650)
35 PF04156 IncA: IncA protein; 74.9 82 0.0018 30.3 15.3 99 4-102 82-180 (191)
36 PF13870 DUF4201: Domain of un 74.8 81 0.0018 30.2 14.1 100 4-103 57-161 (177)
37 TIGR02169 SMC_prok_A chromosom 74.4 2.2E+02 0.0049 35.1 48.4 34 7-40 678-711 (1164)
38 TIGR03185 DNA_S_dndD DNA sulfu 73.4 1.9E+02 0.0041 33.7 36.9 39 214-252 378-416 (650)
39 PF04108 APG17: Autophagy prot 72.5 1.6E+02 0.0034 32.4 41.8 61 458-530 342-402 (412)
40 TIGR02168 SMC_prok_B chromosom 72.1 2.5E+02 0.0054 34.6 48.3 39 6-44 680-718 (1179)
41 PF11657 Activator-TraM: Trans 70.2 96 0.0021 29.0 15.3 75 133-207 35-115 (144)
42 PF07464 ApoLp-III: Apolipopho 70.0 84 0.0018 29.8 11.8 26 143-168 26-51 (155)
43 PF14915 CCDC144C: CCDC144C pr 69.1 1.5E+02 0.0033 30.9 18.0 45 23-67 157-201 (305)
44 PF00038 Filament: Intermediat 68.4 1.5E+02 0.0033 30.7 36.9 36 11-46 5-40 (312)
45 PF12128 DUF3584: Protein of u 67.3 3.4E+02 0.0073 34.2 67.4 108 67-174 300-414 (1201)
46 cd07626 BAR_SNX9_like The Bin/ 67.1 1.4E+02 0.0029 29.6 20.9 31 116-146 8-38 (199)
47 cd09238 V_Alix_like_1 Protein- 64.9 2E+02 0.0043 30.7 21.0 44 115-159 237-280 (339)
48 PF14643 DUF4455: Domain of un 64.2 2.4E+02 0.0053 31.5 49.3 287 76-377 108-434 (473)
49 PF10168 Nup88: Nuclear pore c 63.3 3.1E+02 0.0068 32.5 20.1 76 154-234 550-625 (717)
50 PF05384 DegS: Sensor protein 62.3 1.5E+02 0.0032 28.3 18.1 73 4-76 7-88 (159)
51 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.2 1.3E+02 0.0028 27.4 14.2 60 4-63 32-91 (132)
52 PRK02224 chromosome segregatio 60.9 3.6E+02 0.0079 32.4 64.6 12 508-519 737-748 (880)
53 PF14643 DUF4455: Domain of un 60.3 2.8E+02 0.0062 31.0 46.9 49 115-163 11-59 (473)
54 smart00806 AIP3 Actin interact 59.6 2.8E+02 0.006 30.6 25.1 115 160-275 153-276 (426)
55 KOG1899 LAR transmembrane tyro 59.5 2.4E+02 0.0051 32.6 14.3 47 73-119 228-277 (861)
56 PF07889 DUF1664: Protein of u 57.2 1.3E+02 0.0028 27.5 10.1 15 85-99 94-108 (126)
57 PF00015 MCPsignal: Methyl-acc 56.5 1.9E+02 0.0041 27.7 23.7 57 95-151 44-100 (213)
58 PF10456 BAR_3_WASP_bdg: WASP- 55.2 2.4E+02 0.0052 28.6 19.8 137 115-254 44-233 (237)
59 PF04108 APG17: Autophagy prot 54.7 3.3E+02 0.0071 29.9 33.3 42 13-54 62-103 (412)
60 PF00261 Tropomyosin: Tropomyo 54.5 2.4E+02 0.0052 28.3 26.1 102 8-109 20-124 (237)
61 KOG0999 Microtubule-associated 53.5 3.9E+02 0.0084 30.4 45.3 199 1-206 6-241 (772)
62 KOG0804 Cytoplasmic Zn-finger 52.4 2.3E+02 0.005 31.3 12.5 51 11-61 348-398 (493)
63 PF05911 DUF869: Plant protein 51.5 4.8E+02 0.01 31.2 16.1 118 8-125 594-711 (769)
64 PF06730 FAM92: FAM92 protein; 50.8 2.7E+02 0.0059 27.9 23.3 109 139-247 9-128 (219)
65 PF04740 LXG: LXG domain of WX 49.7 2.5E+02 0.0054 27.1 21.9 52 78-129 8-60 (204)
66 KOG1962 B-cell receptor-associ 48.6 1.1E+02 0.0023 30.6 8.8 65 29-107 149-213 (216)
67 COG4913 Uncharacterized protei 46.1 5.7E+02 0.012 30.3 25.8 109 227-346 776-884 (1104)
68 KOG0946 ER-Golgi vesicle-tethe 46.1 6E+02 0.013 30.4 23.7 35 81-115 766-800 (970)
69 cd07598 BAR_FAM92 The Bin/Amph 46.0 3.1E+02 0.0068 27.2 25.7 63 142-204 5-67 (211)
70 PRK15048 methyl-accepting chem 45.9 4.9E+02 0.011 29.4 34.7 32 293-325 390-421 (553)
71 PF09730 BicD: Microtubule-ass 45.0 6E+02 0.013 30.2 38.9 364 4-440 266-703 (717)
72 PF06008 Laminin_I: Laminin Do 43.3 3.7E+02 0.0081 27.3 30.0 34 220-253 171-204 (264)
73 KOG4302 Microtubule-associated 43.2 6.1E+02 0.013 29.7 27.9 48 160-207 158-205 (660)
74 PF08614 ATG16: Autophagy prot 42.4 3.3E+02 0.0071 26.4 12.3 109 13-131 81-192 (194)
75 PF13949 ALIX_LYPXL_bnd: ALIX 42.2 4E+02 0.0086 27.3 24.3 22 225-246 202-223 (296)
76 PRK10884 SH3 domain-containing 42.1 1.5E+02 0.0032 29.4 8.7 16 6-21 96-111 (206)
77 PF06008 Laminin_I: Laminin Do 41.0 4E+02 0.0088 27.1 30.9 81 218-308 125-205 (264)
78 PF10186 Atg14: UV radiation r 40.9 4E+02 0.0088 27.0 15.2 105 4-108 35-147 (302)
79 PRK04863 mukB cell division pr 39.7 9.7E+02 0.021 31.1 45.6 37 155-191 442-478 (1486)
80 PF01540 Lipoprotein_7: Adhesi 39.5 4.5E+02 0.0097 27.1 26.2 117 59-193 118-234 (353)
81 KOG4673 Transcription factor T 38.4 7.2E+02 0.016 29.2 46.4 142 201-343 463-619 (961)
82 PF09738 DUF2051: Double stran 38.2 5E+02 0.011 27.3 13.1 62 5-66 79-140 (302)
83 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.2 3.1E+02 0.0067 24.9 17.7 59 83-141 62-120 (132)
84 PF10498 IFT57: Intra-flagella 36.9 5.7E+02 0.012 27.6 15.4 75 115-193 216-290 (359)
85 PRK04778 septation ring format 36.7 7E+02 0.015 28.6 51.1 29 197-225 274-302 (569)
86 TIGR01069 mutS2 MutS2 family p 36.4 7.6E+02 0.016 29.6 15.0 92 11-105 498-590 (771)
87 PF14644 DUF4456: Domain of un 36.4 4.3E+02 0.0093 26.0 19.2 48 130-180 22-69 (208)
88 PF09738 DUF2051: Double stran 36.1 2.6E+02 0.0056 29.5 9.8 59 5-70 114-172 (302)
89 PF03904 DUF334: Domain of unk 35.8 4.7E+02 0.01 26.3 16.9 45 25-69 44-90 (230)
90 COG4942 Membrane-bound metallo 35.7 6.4E+02 0.014 27.8 31.7 56 7-62 42-97 (420)
91 PRK10626 hypothetical protein; 35.6 4.9E+02 0.011 26.5 18.6 19 139-157 66-84 (239)
92 TIGR00634 recN DNA repair prot 35.4 7.2E+02 0.016 28.4 27.0 27 190-216 314-340 (563)
93 PF11172 DUF2959: Protein of u 34.5 4.7E+02 0.01 25.9 17.0 18 270-287 170-187 (201)
94 PF05791 Bacillus_HBL: Bacillu 33.4 4.5E+02 0.0097 25.4 16.9 68 177-252 107-174 (184)
95 cd07648 F-BAR_FCHO The F-BAR ( 33.3 5.2E+02 0.011 26.1 21.3 123 78-206 72-194 (261)
96 PF04156 IncA: IncA protein; 33.2 4.4E+02 0.0095 25.2 13.1 34 25-58 89-122 (191)
97 smart00283 MA Methyl-accepting 33.1 4.7E+02 0.01 25.5 34.4 10 105-114 105-114 (262)
98 PF04111 APG6: Autophagy prote 33.0 6E+02 0.013 26.8 12.1 104 1-104 14-123 (314)
99 COG4477 EzrA Negative regulato 32.2 8.1E+02 0.017 27.9 35.2 26 79-104 73-98 (570)
100 PF05701 WEMBL: Weak chloropla 32.2 7.9E+02 0.017 27.8 48.1 26 84-109 59-84 (522)
101 PLN02939 transferase, transfer 31.9 1.1E+03 0.023 29.2 21.4 56 24-79 226-281 (977)
102 cd07596 BAR_SNX The Bin/Amphip 31.9 4.6E+02 0.01 25.0 26.7 94 120-214 12-109 (218)
103 cd09235 V_Alix Middle V-domain 31.5 6.6E+02 0.014 26.7 25.8 42 118-159 239-280 (339)
104 PF14735 HAUS4: HAUS augmin-li 31.3 5.7E+02 0.012 25.9 21.2 154 73-231 44-217 (238)
105 KOG4403 Cell surface glycoprot 31.2 7.6E+02 0.016 27.3 18.1 112 62-193 309-421 (575)
106 COG4026 Uncharacterized protei 31.2 4.4E+02 0.0096 26.5 9.8 35 24-58 128-162 (290)
107 PF07851 TMPIT: TMPIT-like pro 30.7 4.1E+02 0.0088 28.4 10.2 98 2-103 3-101 (330)
108 KOG1937 Uncharacterized conser 30.0 8.1E+02 0.018 27.3 29.2 76 32-111 294-369 (521)
109 PRK15048 methyl-accepting chem 29.1 8.7E+02 0.019 27.3 51.0 19 316-335 359-377 (553)
110 KOG4460 Nuclear pore complex, 28.9 9.2E+02 0.02 27.6 13.8 101 76-198 584-687 (741)
111 cd07619 BAR_Rich2 The Bin/Amph 28.9 6.4E+02 0.014 25.8 20.7 34 294-327 203-236 (248)
112 PF08581 Tup_N: Tup N-terminal 28.7 3.5E+02 0.0076 22.6 9.5 62 5-66 6-67 (79)
113 PF02520 DUF148: Domain of unk 28.2 4.1E+02 0.0088 23.2 8.5 27 225-251 70-96 (113)
114 KOG2189 Vacuolar H+-ATPase V0 27.5 4.8E+02 0.01 31.0 10.7 80 104-183 180-282 (829)
115 PRK08032 fliD flagellar cappin 27.5 8.9E+02 0.019 26.9 14.0 33 200-232 359-397 (462)
116 cd08915 V_Alix_like Protein-in 27.4 7.6E+02 0.016 26.1 28.7 44 116-160 241-284 (342)
117 KOG4403 Cell surface glycoprot 27.3 8.9E+02 0.019 26.8 13.5 17 63-79 348-364 (575)
118 PF03915 AIP3: Actin interacti 27.1 8.9E+02 0.019 26.8 18.5 121 161-282 150-279 (424)
119 cd09236 V_AnPalA_UmRIM20_like 26.9 8E+02 0.017 26.2 25.1 39 119-158 255-293 (353)
120 TIGR01834 PHA_synth_III_E poly 26.8 7.9E+02 0.017 26.1 17.8 38 215-252 277-314 (320)
121 COG1579 Zn-ribbon protein, pos 26.7 6.9E+02 0.015 25.4 21.7 71 5-78 12-82 (239)
122 KOG0933 Structural maintenance 26.7 1.3E+03 0.028 28.5 41.1 33 343-375 1004-1037(1174)
123 PF11932 DUF3450: Protein of u 26.5 6.8E+02 0.015 25.2 16.3 102 87-193 14-115 (251)
124 KOG0977 Nuclear envelope prote 26.4 1E+03 0.022 27.3 34.2 55 458-512 313-367 (546)
125 KOG4331 Polytopic membrane pro 26.4 1.2E+03 0.026 28.1 19.6 211 18-252 173-397 (865)
126 PF15030 DUF4527: Protein of u 26.2 7.1E+02 0.015 25.4 11.0 58 14-71 41-98 (277)
127 PF04803 Cor1: Cor1/Xlr/Xmr co 25.8 5.2E+02 0.011 23.7 16.2 50 387-436 3-53 (130)
128 PF08172 CASP_C: CASP C termin 25.5 7.2E+02 0.016 25.3 10.8 98 5-105 1-132 (248)
129 PF04201 TPD52: Tumour protein 24.8 6.2E+02 0.013 24.2 10.0 34 28-61 33-66 (162)
130 PRK10884 SH3 domain-containing 24.7 6.9E+02 0.015 24.7 11.0 31 78-108 137-167 (206)
131 PF12001 DUF3496: Domain of un 24.5 3.2E+02 0.0069 24.5 6.9 38 10-47 29-66 (111)
132 PF05701 WEMBL: Weak chloropla 24.5 1.1E+03 0.023 26.8 56.1 60 3-62 34-93 (522)
133 PF05478 Prominin: Prominin; 23.9 1.3E+03 0.028 27.7 23.8 27 114-142 139-165 (806)
134 PF06160 EzrA: Septation ring 23.7 1.1E+03 0.025 26.9 54.7 56 84-139 126-181 (560)
135 PF15463 ECM11: Extracellular 23.2 5.9E+02 0.013 23.4 9.0 73 107-179 64-136 (139)
136 KOG0976 Rho/Rac1-interacting s 22.7 1.4E+03 0.03 27.5 53.3 89 12-103 83-171 (1265)
137 PRK04778 septation ring format 22.6 1.2E+03 0.026 26.7 48.5 72 86-157 111-185 (569)
138 COG4026 Uncharacterized protei 22.4 8.1E+02 0.018 24.7 11.1 44 12-55 137-180 (290)
139 KOG2010 Double stranded RNA bi 21.8 7.5E+02 0.016 26.3 9.9 79 7-89 116-198 (405)
140 cd07666 BAR_SNX7 The Bin/Amphi 21.8 8.6E+02 0.019 24.8 27.1 51 193-243 105-155 (243)
141 KOG0979 Structural maintenance 21.6 1.6E+03 0.034 27.8 31.7 37 44-80 663-699 (1072)
142 PF10456 BAR_3_WASP_bdg: WASP- 21.3 8.7E+02 0.019 24.6 22.7 102 143-247 47-162 (237)
143 cd07594 BAR_Endophilin_B The B 21.0 8.6E+02 0.019 24.5 17.7 25 291-315 198-225 (229)
144 PRK07739 flgK flagellar hook-a 20.9 8.8E+02 0.019 27.3 11.4 61 93-163 70-131 (507)
145 KOG0995 Centromere-associated 20.8 1.3E+03 0.028 26.5 39.1 57 234-290 510-566 (581)
146 TIGR00996 Mtu_fam_mce virulenc 20.5 9.1E+02 0.02 24.6 18.3 10 95-104 131-140 (291)
147 PF06705 SF-assemblin: SF-asse 20.2 8.9E+02 0.019 24.3 33.4 38 66-103 71-108 (247)
148 PLN03094 Substrate binding sub 20.2 1.1E+03 0.024 25.5 16.5 20 79-100 233-252 (370)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-52 Score=466.72 Aligned_cols=587 Identities=27% Similarity=0.371 Sum_probs=571.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007823 1 MGVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTH 80 (588)
Q Consensus 1 me~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~ 80 (588)
||.+|+..+++|.+++++|-.+.....+|+++++.++..|..+...|+.+++.+.+++..|++++||++.+.++|..|..
T Consensus 453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~ 532 (1041)
T KOG0243|consen 453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVD 532 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 007823 81 QACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIH 160 (588)
Q Consensus 81 ~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~ 160 (588)
+|+.|+..++.++.|+++||.||||+.++++.|+.+.+.|+.++...++.+..+|+...++|..+|..|...+.+|++.+
T Consensus 533 ~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~ 612 (1041)
T KOG0243|consen 533 RATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAK 612 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007823 161 EKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQ 240 (588)
Q Consensus 161 ~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk 240 (588)
..+...++.++...++.|++++++++.+...++..+.+.++.|.+...++.++++.++......+..++++++..|..|+
T Consensus 613 ~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~ 692 (1041)
T KOG0243|consen 613 SKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQ 692 (1041)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 007823 241 GEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVT 320 (588)
Q Consensus 241 ~~l~~~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~~L~~~~~~~~~~~~~~L~~~~~~~e~~a~~e~~~Ll~~I~ 320 (588)
+.+..+++|.+..+......++.++..+..||+++..++..+++.....+......+.+|++.|+. .+.+.++++++|.
T Consensus 693 ~~~~l~~~qe~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 771 (1041)
T KOG0243|consen 693 EILSLFANQELQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES-IAEDEKQLVEDIK 771 (1041)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh-hHHHHHHHHHHHH
Confidence 999999999898899999999999999999999999999999999999999999999999999999 7778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHhhccccccccchhhhhhhHHHHHHH
Q 007823 321 SLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQ 400 (588)
Q Consensus 321 ~Ll~~~~~~q~~~l~~~~~~l~~~~~~~~~~l~~~~ss~q~~~~~~k~~~~~~~~~~e~~~~e~~~~~~~~~~~mE~~lq 400 (588)
.++.++.+++.+++..++..++.........+...++.++.+...++..|..+..+++.++.+...+++.+++.|+..++
T Consensus 772 e~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 851 (1041)
T KOG0243|consen 772 ELLSSHDQRNNELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLK 851 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhhccchhhHhhhhhhhhhHHHHHhhHHHHHHHHHhhHHHHHH
Q 007823 401 ECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQA 480 (588)
Q Consensus 401 ~~~~~~~~sv~~~~~~~~ql~~l~~~q~~~ld~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 480 (588)
.|...+...+.+|+.+..++.++...+++.++.+++.+.+++..+..++.++.......++....+|.+.++.....+..
T Consensus 852 ~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~~i~t~~~~~~~~~~~ 931 (1041)
T KOG0243|consen 852 ELLENAESQVDECKEAIESLKSLESNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSIVTPHSILLKLDDD 931 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHhhHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcccCCCCCCcccc-cccCCccchhhccCCcHHHHHHH
Q 007823 481 SIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEHTGTTPTRCE-SEVPSKGTIESLRAMPMETLLEE 559 (588)
Q Consensus 481 ~~~~~~~~~~~~~~~L~~l~~~~~~~l~~i~~~~~~~l~~~l~~d~PTGtTP~Kr~-~~yPs~lsi~~~rT~p~e~LL~~ 559 (588)
........+..+...+..|..++..+...|..+++.|+..+|.+|.|++.||.+.. ++.|+..+|++++++|.+.++++
T Consensus 932 ~~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~~sp~~~s~~~~~s~~~v~~~~~~~~e~~~~~ 1011 (1041)
T KOG0243|consen 932 VLPETLVIISPSLELLGELFQDLEHKDRDIENNSGETSLDDYVVDEPSTSSPTKLSRINIPSIGSVESLTTPFSEGTLRE 1011 (1041)
T ss_pred ccccchHhhcccHHHHHHhhccccchhhhhhhccccccchhhcccccCCCCccccccCCCCCcccccccccCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHhcCCCCcccccccCCCCCCCCCCCCCC
Q 007823 560 FRENNSYESFDVKELKPSLIPRSPLSQIN 588 (588)
Q Consensus 560 fr~~~~~~~~~~~~~~~~~~~r~pl~~~n 588 (588)
++..+.++....+.-++....|+||..+|
T Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~n 1040 (1041)
T KOG0243|consen 1012 SRLNNELEVFKTGEIKGVSNGRPPLSAQN 1040 (1041)
T ss_pred cccccchhhhccccccCCCCCCCchhhcc
Confidence 99999887766666666889999999987
No 2
>PF13931 Microtub_bind: Kinesin-associated microtubule-binding
Probab=99.34 E-value=5.2e-13 Score=121.78 Aligned_cols=42 Identities=38% Similarity=0.506 Sum_probs=40.2
Q ss_pred hhhcccCCCCCCcccccccCCccchhhccCCcHHHHHHHHHhcCCC
Q 007823 521 RYMDYEHTGTTPTRCESEVPSKGTIESLRAMPMETLLEEFRENNSY 566 (588)
Q Consensus 521 ~l~~d~PTGtTP~Kr~~~yPs~lsi~~~rT~p~e~LL~~fr~~~~~ 566 (588)
+|++|+|||+||+||.|.||+.| +||.||+.||++||..+.+
T Consensus 1 dl~~~~pTG~TP~rk~y~YP~~L----~~T~ph~~ll~~~r~~~~~ 42 (143)
T PF13931_consen 1 DLKEYVPTGTTPQRKEYQYPRTL----PRTEPHERLLRRLREEQEE 42 (143)
T ss_pred CCccccCCCCCCCcccccCCCcc----CCCCcHHHHHHHHHhccch
Confidence 58999999999999999999999 9999999999999998875
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.26 E-value=1e-05 Score=94.10 Aligned_cols=227 Identities=12% Similarity=0.085 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHhhccccccccchhhhhhh
Q 007823 314 KLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHC 393 (588)
Q Consensus 314 ~Ll~~I~~Ll~~~~~~q~~~l~~~~~~l~~~~~~~~~~l~~~~ss~q~~~~~~k~~~~~~~~~~e~~~~e~~~~~~~~~~ 393 (588)
.++.-+-.=+......-++++..+...+...+....+.+.......++.-.++++-...+..+.
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~---------------- 781 (1041)
T KOG0243|consen 718 ELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRN---------------- 781 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3333333334555556677777778888888887777777644344444444444444444332
Q ss_pred HHHHHHHHHhhhhhhhhH-HHHHHHHHHHHhh---hHhHHHHHHHHHHhhhccchhhHhhhhhhhhhHHHHHhhHHHHHH
Q 007823 394 RMELLLQECVNSGESAFG-HWKRTYESVNEME---SKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQ 469 (588)
Q Consensus 394 ~mE~~lq~~~~~~~~sv~-~~~~~~~ql~~l~---~~q~~~ld~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~ 469 (588)
-+.+..-+.|...++. ........+..|. ..-....+++.. ++..++........... ...+.....+..
T Consensus 782 --~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~---~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~ 855 (1041)
T KOG0243|consen 782 --NELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGK---QNENHHNEVLSAIEEKQ-QAMKSVLKELLE 855 (1041)
T ss_pred --HHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHH---HHHhhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1334444444555552 2444443333332 111111111111 22222222222222222 333444444444
Q ss_pred HHHhhHHHHHHHHHHHHhhHHHhHHHHHHHHHHh--------hhhHHHHHHHHHHHHHhhhhcccCCCCCCcccccccCC
Q 007823 470 LIASASEQEQASIAEVLDDVKAHEKTINLFRESH--------SAQSASIKEKAQETFQQRYMDYEHTGTTPTRCESEVPS 541 (588)
Q Consensus 470 ~i~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~--------~~~l~~i~~~~~~~l~~~l~~d~PTGtTP~Kr~~~yPs 541 (588)
.+..+.+..+.....+.+....+...+..+-.+. .+-+..+......|......-+.|+|.+|....+.||.
T Consensus 856 ~~~~~~~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~ 935 (1041)
T KOG0243|consen 856 NAESQVDECKEAIESLKSLESNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSIVTPHSILLKLDDDVLPE 935 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhcccccccccccccccccccccc
Confidence 4444444333344444444333333333321111 12333333445566668888999999999999999999
Q ss_pred ccchhhccCCcHHHHHHHHHhcCCC
Q 007823 542 KGTIESLRAMPMETLLEEFRENNSY 566 (588)
Q Consensus 542 ~lsi~~~rT~p~e~LL~~fr~~~~~ 566 (588)
.+ .++.|+..++..++++..|
T Consensus 936 t~----~~~~~~~~~~~~l~~~~~~ 956 (1041)
T KOG0243|consen 936 TL----VIISPSLELLGELFQDLEH 956 (1041)
T ss_pred ch----HhhcccHHHHHHhhccccc
Confidence 99 9999999999999885543
No 4
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.92 E-value=1.5 Score=52.28 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHhhhccchhhHhhhhhhhhh
Q 007823 413 WKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVAT 456 (588)
Q Consensus 413 ~~~~~~ql~~l~~~q~~~ld~~v~~~~~~~~~~~~~~~s~~~~~ 456 (588)
--.+++-+..|+ ...+.++.++++..+-+..-+.+...+..-+
T Consensus 1656 A~~a~q~~~~lq-~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA 1698 (1758)
T KOG0994|consen 1656 ALSAEQGLEILQ-KYYELVDRLLEKRMEGSQAARERAEQLRTEA 1698 (1758)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 555666667777 7778888888766555555555555555544
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.11 E-value=2.2 Score=44.62 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=26.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007823 131 LCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLH 192 (588)
Q Consensus 131 l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~ 192 (588)
|...|.....+....+......+..+...+ +.++..+..........+-+++..++..+
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k---~~~l~~~~~~~~~~~~~~~~E~~~~r~~~ 225 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSK---LEELRQQSEKSSEELESAKEELKELRRQI 225 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccc---cccccccccccccccchhHhHHHHHHhhh
Confidence 333334444444445555555555443322 33344444444444444444444444444
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.80 E-value=9.3 Score=49.22 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHH
Q 007823 10 KQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIK 45 (588)
Q Consensus 10 k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~ 45 (588)
+++.++.+.++..+....++..+....+..+...+.
T Consensus 908 ~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~ 943 (1930)
T KOG0161|consen 908 KELKELKERLEEEEEKNAELERKKRKLEQEVQELKE 943 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333333333333
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.76 E-value=9.6 Score=49.09 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=33.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 207 ASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERT 261 (588)
Q Consensus 207 ~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~ 261 (588)
.......+.+ +.....++...+..+.+........+..+++++.+..++-...+
T Consensus 1268 ~~~l~~E~~~-l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~ 1321 (1930)
T KOG0161|consen 1268 RSRLQNENEE-LSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALE 1321 (1930)
T ss_pred HHHhhhhHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444 44455556667777777777777777777777777666544433
No 8
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.59 E-value=7.6 Score=46.77 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007823 160 HEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKA 194 (588)
Q Consensus 160 ~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~ 194 (588)
......+|+.++.++|+ +.++.++..++....+
T Consensus 1279 l~~~~keL~e~~~~ik~--sdi~GA~~~~r~a~~~ 1311 (1758)
T KOG0994|consen 1279 LLTTYKELREQLEKIKE--SDILGAFNSTRHAYEQ 1311 (1758)
T ss_pred HHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHH
Confidence 45566667777766654 3344455555544443
No 9
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=95.15 E-value=3.1 Score=39.59 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 007823 120 FQVELAQQIGSLCDIVDLST 139 (588)
Q Consensus 120 f~~~l~~~~~~l~~~v~~~~ 139 (588)
+...+......+...+..+.
T Consensus 43 l~~~~~~~~~~l~~~~~~~~ 62 (202)
T PF01442_consen 43 LESELEELSDRLEERLDEVK 62 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.35 E-value=19 Score=44.93 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007823 7 THQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALK 62 (588)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~ 62 (588)
....++..+...+..-......++..+......+.+.+..+...+..+...+..+.
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666665555554444
No 11
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.16 E-value=12 Score=42.12 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 11 QLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLE 90 (588)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~ 90 (588)
++-.+..+.+........+..+...++..+++.+..+++.+..+..++..+.+....+...+.-=..+-..-..|-..+.
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555555555555555555554444444433333333333334444444
Q ss_pred HhhchhHHHhHhhhhhHh
Q 007823 91 KALQDNVLLFQKIGREDK 108 (588)
Q Consensus 91 ~s~~Dv~gLh~Kl~Rk~~ 108 (588)
.-...+++|+.-|.|=++
T Consensus 173 ~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 173 RLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHhhhhHHHHHHHHH
Confidence 444555555555555444
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.21 E-value=31 Score=43.63 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHH
Q 007823 413 WKRTYESVNEMESKHVSSMISLT 435 (588)
Q Consensus 413 ~~~~~~ql~~l~~~q~~~ld~~v 435 (588)
+.++.-.+.+|+ ....+||.-+
T Consensus 1110 ~~~~~~~~~d~~-~~~~~~~~~~ 1131 (1311)
T TIGR00606 1110 MRTTELVNKDLD-IYYKTLDQAI 1131 (1311)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 334444445555 4444444444
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.10 E-value=34 Score=41.40 Aligned_cols=177 Identities=11% Similarity=0.146 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHh
Q 007823 29 LTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDK 108 (588)
Q Consensus 29 lk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~ 108 (588)
...-+-.+-..|+.++..+...++.+..-+..++|++-++.+...+|. +.++.
T Consensus 212 i~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~-------------------------~~~~l-- 264 (1074)
T KOG0250|consen 212 ITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLED-------------------------LKENL-- 264 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHH--
Confidence 334444455555666666666666666666666665555554433332 22222
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007823 109 LNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNV 188 (588)
Q Consensus 109 le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l 188 (588)
...=...++.+.......+......+......+...-..+...... +..-.....+.++++...++.-+.--++++.+
T Consensus 265 -~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k-~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~ 342 (1074)
T KOG0250|consen 265 -EQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGK-IEEARQKLTEIEAKIGELKDEVDAQDEEIEEA 342 (1074)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2222345555666666666666666555544444333333332222 01111111333444444444433333333333
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007823 189 VRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVT 257 (588)
Q Consensus 189 ~~~~k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~ 257 (588)
+.+++. +..-..+++.-+.+.++.+..-+..+..+..++.......
T Consensus 343 r~~~~~-----------------------~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 343 RKDLDD-----------------------LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 4444455666667777777777777777776666555444
No 14
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=91.66 E-value=3.5 Score=38.96 Aligned_cols=133 Identities=10% Similarity=0.095 Sum_probs=64.5
Q ss_pred HhhHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 007823 111 ADNRSVVENFQVELAQQIG---------SLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSH 181 (588)
Q Consensus 111 ~~Nr~~~~~f~~~l~~~~~---------~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~ 181 (588)
.+-+.....|+.++...++ .|......|..+-.....+|.+.+..--...+.+..+++..|....+.+...
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~ 82 (155)
T PF07464_consen 3 QHAQEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKA 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-
T ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555552 3333333444444444444444444433456677777777777766666554
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHH-HH---HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007823 182 MEAVQNVVRLHKACSNANLEEISAFASSNSESI-KE---FLASEAREAASIYENLQTTLSTQQGEM 243 (588)
Q Consensus 182 le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v-~~---f~~sl~~e~~sv~~dlq~~L~~Qk~~l 243 (588)
--++..=+..+..++.+++..+-..++.....| .+ --..|..-++.++++.++.+......|
T Consensus 83 ~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l 148 (155)
T PF07464_consen 83 NPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQL 148 (155)
T ss_dssp SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444334444444444444444444444444 11 234455555666666666665444433
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.51 E-value=43 Score=41.31 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHH
Q 007823 11 QLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKL 46 (588)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~ 46 (588)
++.++...+..-...+.++...+...+..+......
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~ 710 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333333333333333333333
No 16
>PRK11637 AmiB activator; Provisional
Probab=91.08 E-value=28 Score=38.33 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007823 7 THQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALK 62 (588)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~ 62 (588)
..++++.+.+......+....++.++++.....|..+...+..++..+..+...+.
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~ 106 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID 106 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333333344444444444444444444444444443333
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.94 E-value=57 Score=40.12 Aligned_cols=9 Identities=44% Similarity=0.837 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 007823 11 QLEELQDKY 19 (588)
Q Consensus 11 ~~~~~~~~~ 19 (588)
+++.++...
T Consensus 678 e~~~l~~~~ 686 (1179)
T TIGR02168 678 EIEELEEKI 686 (1179)
T ss_pred HHHHHHHHH
Confidence 333333333
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.86 E-value=71 Score=41.13 Aligned_cols=102 Identities=13% Similarity=-0.013 Sum_probs=62.6
Q ss_pred HHHHhhchhHHHhHhhhhhHhhhH----hh---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 007823 88 NLEKALQDNVLLFQKIGREDKLNA----DN---RSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIH 160 (588)
Q Consensus 88 ~l~~s~~Dv~gLh~Kl~Rk~~le~----~N---r~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~ 160 (588)
+=..-+.|...|+....|-..+.. .+ ...-..-+..+...+..+.+.|..... .++.....+..|-..+
T Consensus 760 t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~----klq~~~~~~r~l~~~~ 835 (1822)
T KOG4674|consen 760 TEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKK----KLQEKSSDLRELTNSL 835 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Confidence 334455667777766655543222 11 112222233344445555555544443 4677777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 161 EKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 161 ~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
+.-..++..++..+...+.+.+.++..+.....
T Consensus 836 ~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 836 EKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877765554
No 19
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.77 E-value=57 Score=39.90 Aligned_cols=84 Identities=25% Similarity=0.361 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 9 QKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGN 88 (588)
Q Consensus 9 ~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~ 88 (588)
+-+++-|..+...-+..+.++++.|..-...+.+-+..|..++.+|...+..+++..--+....+++..|..+-..++.-
T Consensus 506 esel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 506 ESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777888888899999999999999999999999999999999888888888888888665555555444
Q ss_pred HHHh
Q 007823 89 LEKA 92 (588)
Q Consensus 89 l~~s 92 (588)
+++.
T Consensus 586 veE~ 589 (1293)
T KOG0996|consen 586 VEEA 589 (1293)
T ss_pred HHHH
Confidence 4443
No 20
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=89.63 E-value=27 Score=36.00 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 007823 116 VVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIH 160 (588)
Q Consensus 116 ~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~ 160 (588)
-..-|..+|.. +..+...|......|...+..+......|+...
T Consensus 191 ~~~lf~~eL~k-~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~ 234 (296)
T PF13949_consen 191 FEALFEEELKK-FDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR 234 (296)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666 777788888888888888888888888887554
No 21
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.21 E-value=48 Score=38.21 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007823 16 QDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKAL 93 (588)
Q Consensus 16 ~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~ 93 (588)
...+...++....|+++++.....+....+.+......+++....+.+...-...+ ..+-.|...+..|+...++-+
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l-e~~~~l~~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL-EEELKLKKKTVELLPDAEENI 396 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHH
Confidence 34455555566666666666666666666666666666666665555444433332 344555566666655554444
No 22
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=88.12 E-value=22 Score=32.95 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=60.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhhhhHHHHHH
Q 007823 132 CDIVDLSTCQQNEHLKHVEKLCHSLL-----GIHEKAVIDLKKKVTASRALYCSHME-AVQNVVRLHKACSNANLEEISA 205 (588)
Q Consensus 132 ~~~v~~~~~qQ~~~l~~~~~~~~sfv-----~~~~~a~~~l~~~i~~~kd~~~s~le-~i~~l~~~~k~~~~~~le~lss 205 (588)
+..+.+....|+.+|..+.+.+++-. +++.++..-|...+..+|+.|+.++. ..+..++.++..++..+.++..
T Consensus 34 erLlees~kAQq~mL~~FkeelE~iasrW~~dak~KAEkiLnaaLaaSKeam~~~m~e~~~~~~~~i~~~i~~~~~e~~~ 113 (144)
T PRK13895 34 DRLMQDSAKAQQEMLDQFKEELESIASRWGDDAKEKAERILNAALAASKEAMAKGMQEGAKAAAEAVRREISASLAELAA 113 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888766 67888888899999999999999985 5777778888777666666665
Q ss_pred HHh
Q 007823 206 FAS 208 (588)
Q Consensus 206 ~~~ 208 (588)
.+.
T Consensus 114 ~~~ 116 (144)
T PRK13895 114 PVR 116 (144)
T ss_pred HHH
Confidence 543
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.72 E-value=98 Score=39.99 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHH-------HHHHHHHHHHHHHHHHhhhHHH
Q 007823 218 LASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTI------ERTK-------DIAEYTNGFLQKLLEESKSLEN 284 (588)
Q Consensus 218 ~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~------~~~~-------~~s~~l~~fl~~l~~~~~~L~~ 284 (588)
|..-.......+..++.+|..|+..+..+..++..+....- ...+ ...+.+..-+++|+..-.+|.-
T Consensus 701 ~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~ 780 (1822)
T KOG4674|consen 701 TKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQL 780 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556688889999999999999998888887665422 2222 3334455555556666566655
Q ss_pred HHHHhhHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 007823 285 YAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITT 364 (588)
Q Consensus 285 ~~~~~~~~~~~~L~~~~~~~e~~a~~e~~~Ll~~I~~Ll~~~~~~q~~~l~~~~~~l~~~~~~~~~~l~~~~ss~q~~~~ 364 (588)
.+...| .+...-++.-...++.+=++|-.|..+ +++...-+...++.+++........|..++..++....
T Consensus 781 ~l~~lQ--------t~~~~~e~s~~~~k~~~e~~i~eL~~e-l~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~ 851 (1822)
T KOG4674|consen 781 LLDNLQ--------TQKNELEESEMATKDKCESRIKELERE-LQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES 851 (1822)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 544333 233333333344455555677776655 56666668889999999888888888888887777777
Q ss_pred hHHHHHHHH
Q 007823 365 DAKRKWQAF 373 (588)
Q Consensus 365 ~~k~~~~~~ 373 (588)
.+..-.+..
T Consensus 852 ~~~~~~~~l 860 (1822)
T KOG4674|consen 852 ELKSLLTSL 860 (1822)
T ss_pred HHHHHHHHH
Confidence 666555543
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.26 E-value=1e+02 Score=39.61 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007823 218 LASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTI---------ERTKDIAEYTNGFLQKLLEESKSLENYA 286 (588)
Q Consensus 218 ~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~---------~~~~~~s~~l~~fl~~l~~~~~~L~~~~ 286 (588)
|..+..+....++++...+++..+.-..+++++++-..+.- -.+...-..|.+.+.....+...++..|
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~m 633 (1486)
T PRK04863 556 LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYM 633 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHH
Confidence 55555555555655555554444444445544444333322 2233444445555554444445544443
No 25
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=83.05 E-value=4.1 Score=30.27 Aligned_cols=41 Identities=37% Similarity=0.379 Sum_probs=36.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHH
Q 007823 3 VQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQT 43 (588)
Q Consensus 3 ~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T 43 (588)
..|+.++++|.++..++|.++++-....++++..+..|++.
T Consensus 3 ~Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E~ 43 (45)
T PF04394_consen 3 EQLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELEEY 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999999988887763
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.68 E-value=93 Score=35.34 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 007823 167 LKKKVTASRALYC 179 (588)
Q Consensus 167 l~~~i~~~kd~~~ 179 (588)
|+.++..+.+.+.
T Consensus 288 LkeqLr~~qe~lq 300 (546)
T PF07888_consen 288 LKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.18 E-value=1.5e+02 Score=37.53 Aligned_cols=15 Identities=0% Similarity=0.102 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhh
Q 007823 508 ASIKEKAQETFQQRY 522 (588)
Q Consensus 508 ~~i~~~~~~~l~~~l 522 (588)
..|...+-.|+...+
T Consensus 1125 ~~~~~~~~~~~~~~~ 1139 (1311)
T TIGR00606 1125 KTLDQAIMKFHSMKM 1139 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555443
No 28
>PRK11637 AmiB activator; Provisional
Probab=81.65 E-value=88 Score=34.37 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 007823 10 KQLEELQDKYDCQV 23 (588)
Q Consensus 10 k~~~~~~~~~~~~~ 23 (588)
++++.++......+
T Consensus 47 ~~l~~l~~qi~~~~ 60 (428)
T PRK11637 47 DQLKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333433333333
No 29
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.34 E-value=75 Score=32.16 Aligned_cols=112 Identities=11% Similarity=0.158 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 183 EAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 262 (588)
Q Consensus 183 e~i~~l~~~~k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~ 262 (588)
..+..+.+.+...+..-.+.++..+..+...+..+...+..+-.....++..........+..|...+. .....-.
T Consensus 70 ~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~----~Er~~R~ 145 (247)
T PF06705_consen 70 EQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFE----NERNERE 145 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 334444444444444444455555544444444444444444433333333333333333333222222 2111111
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHhhhhHHHHH
Q 007823 263 DIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQ 301 (588)
Q Consensus 263 ~~s~~l~~fl~~l~~~~~~L~~~~~~~~~~~~~~L~~~~ 301 (588)
.. =...+..|.+....+...++.-.......+..+.
T Consensus 146 er---E~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~ 181 (247)
T PF06705_consen 146 ER---EENILKRLEEEENRLQEKIEKEKNTRESKLSELR 181 (247)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1234555556666666655544433444444443
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.36 E-value=1.5e+02 Score=35.05 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=40.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HH
Q 007823 2 GVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFII-----------SE 70 (588)
Q Consensus 2 e~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~-----------~~ 70 (588)
|.++.-++.||..||-... .+..++...+....-.++-|.+++..|..++.++.+.+--. .+
T Consensus 98 Eddlk~~~sQiriLQn~c~-------~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~ 170 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCL-------RLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED 170 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4445555556655554332 22333333333333333344444444444444443333222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhh
Q 007823 71 QKKAENALTHQACTLRGNLEKALQDNVLLFQKI 103 (588)
Q Consensus 71 ~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl 103 (588)
+...=..|++--.++-.-+.........|+.|+
T Consensus 171 L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~ 203 (1265)
T KOG0976|consen 171 LHDKNEELNEFNMEFQTKLAEANREKKALEEKL 203 (1265)
T ss_pred HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444445555555554
No 31
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=77.47 E-value=97 Score=32.37 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007823 65 DFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNE 144 (588)
Q Consensus 65 ~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~ 144 (588)
+.|.....-.|+.|+..+..--.-|..-+.....|.+||+..+.--..=..=+.+|+.+|+..+.+.+.++..-....-.
T Consensus 41 ~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlela 120 (305)
T PF14915_consen 41 DDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELA 120 (305)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH
Confidence 34666677778888888888777777778888999999865443222223346778888888888777766653333222
Q ss_pred HH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--hhhHHHHHHHHhhhHHHHHH
Q 007823 145 HL------KHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACS--NANLEEISAFASSNSESIKE 216 (588)
Q Consensus 145 ~l------~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~--~~~le~lss~~~~~~~~v~~ 216 (588)
+. -.+...|.+-++..-..-.-|..++.++..-.++.-..++.++.++..+. -.+++.=-+.+......++.
T Consensus 121 fqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~ 200 (305)
T PF14915_consen 121 FQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEH 200 (305)
T ss_pred HHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23555566555555555666777888887778887778888888887664 22333222222333334444
Q ss_pred HHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 217 FLASEAR---EAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIE 259 (588)
Q Consensus 217 f~~sl~~---e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~ 259 (588)
.|..-.. .+-+=-+.+..-|...+.+-..+++|+..+..+...
T Consensus 201 m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 201 MYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 111222444566666677777788888888777443
No 32
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.75 E-value=1.6e+02 Score=34.03 Aligned_cols=94 Identities=27% Similarity=0.296 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACT 84 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~ 84 (588)
.+..++++++|++..+.-......+..+++.++..+......++..+.....-...++=++-+..-+...|+.+ ..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni----~k 398 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI----AK 398 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HH
Confidence 34556777777777777666666667777777766666666666655555544444433333333345555555 34
Q ss_pred HHHHHHHhhchhHHHhHh
Q 007823 85 LRGNLEKALQDNVLLFQK 102 (588)
Q Consensus 85 L~~~l~~s~~Dv~gLh~K 102 (588)
|-..++.+..=+-.|..+
T Consensus 399 L~~~v~~s~~rl~~L~~q 416 (594)
T PF05667_consen 399 LQALVEASEQRLVELAQQ 416 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555444
No 33
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.50 E-value=1.4e+02 Score=33.36 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007823 160 HEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKA 194 (588)
Q Consensus 160 ~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~ 194 (588)
..+....|+.+|..+.+.-...-.+-.++...++.
T Consensus 163 ~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 163 EAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445567777777777766677777777777765
No 34
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.37 E-value=1.7e+02 Score=34.12 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=32.2
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHh
Q 007823 27 SDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQK 102 (588)
Q Consensus 27 ~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~K 102 (588)
.++.++++..+..+.+....+...+..+...+..+++ +...+...+..+...|+.+...-+.--..+.+|-..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~---a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e 277 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEE---AQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAA 277 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433322 333444444445555555555444444444444444
No 35
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.95 E-value=82 Score=30.29 Aligned_cols=99 Identities=27% Similarity=0.341 Sum_probs=52.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007823 4 QLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQAC 83 (588)
Q Consensus 4 ~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~ 83 (588)
++...+.++..+...++..+..+.++..++...+..+....+.+...+..+...+..+++-.--+....+....+-..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666666666666666666666665555433333333333344444444
Q ss_pred HHHHHHHHhhchhHHHhHh
Q 007823 84 TLRGNLEKALQDNVLLFQK 102 (588)
Q Consensus 84 ~L~~~l~~s~~Dv~gLh~K 102 (588)
.+...+.....+-..|-.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333
No 36
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=74.75 E-value=81 Score=30.15 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007823 4 QLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQAC 83 (588)
Q Consensus 4 ~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~ 83 (588)
.|+.+.+++.+++..+-...+.+.-.++++......+...+..|...+..+...+..+..-..-+..+...=..|..+++
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57778888888888888888888888888888888888888888888888887777776555555555555555555554
Q ss_pred -----HHHHHHHHhhchhHHHhHhh
Q 007823 84 -----TLRGNLEKALQDNVLLFQKI 103 (588)
Q Consensus 84 -----~L~~~l~~s~~Dv~gLh~Kl 103 (588)
.|+.+++.++..+..|-..|
T Consensus 137 ~~~~P~ll~Dy~~~~~~~~~l~~~i 161 (177)
T PF13870_consen 137 LLGVPALLRDYDKTKEEVEELRKEI 161 (177)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666654
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=74.35 E-value=2.2e+02 Score=35.06 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhH
Q 007823 7 THQKQLEELQDKYDCQVRQCSDLTTKLELTESNL 40 (588)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L 40 (588)
....+++.++..+..-......+..++...+..+
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~ 711 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333333333333333333333
No 38
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.43 E-value=1.9e+02 Score=33.74 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007823 214 IKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQ 252 (588)
Q Consensus 214 v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~ 252 (588)
+.+++..+......-+..+...+.....+++.+.+++..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555455566666677777777777777776654
No 39
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=72.54 E-value=1.6e+02 Score=32.43 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=39.6
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcccCCCC
Q 007823 458 EEVAKSSEDALQLIASASEQEQASIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEHTGT 530 (588)
Q Consensus 458 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~l~~i~~~~~~~l~~~l~~d~PTGt 530 (588)
..+..+|..++--+..... ....+...+....+.|..|.+.= ...+.-+..+|-+|.|+--
T Consensus 342 ~~F~~aY~~LL~Ev~RRr~----~~~k~~~i~~~~~eeL~~l~eeE--------~~~Re~F~~e~GdyLP~di 402 (412)
T PF04108_consen 342 EGFLSAYDSLLLEVERRRA----VRDKMKKIIREANEELDKLREEE--------QRRREAFLKEYGDYLPEDI 402 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHccCcCChhh
Confidence 6678889999988886666 55666666666666666654321 1223334466888988743
No 40
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=72.14 E-value=2.5e+02 Score=34.59 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHH
Q 007823 6 ETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTI 44 (588)
Q Consensus 6 e~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~ 44 (588)
+..+++++++...+..-......+..+++..+..+....
T Consensus 680 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 718 (1179)
T TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333333333333333333333
No 41
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=70.21 E-value=96 Score=29.03 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhhhHHHHHHH
Q 007823 133 DIVDLSTCQQNEHLKHVEKLCHSLL-----GIHEKAVIDLKKKVTASRALYCSHM-EAVQNVVRLHKACSNANLEEISAF 206 (588)
Q Consensus 133 ~~v~~~~~qQ~~~l~~~~~~~~sfv-----~~~~~a~~~l~~~i~~~kd~~~s~l-e~i~~l~~~~k~~~~~~le~lss~ 206 (588)
..+..+...|+.++....+.++... +++.++..-|...+..+++.|+..+ +..+.....++..+...+..+...
T Consensus 35 ~ll~~~~~aq~~~l~~fk~elE~~~~~w~~dak~kAEkiL~aal~~ske~m~~~l~e~~~~~~~avk~~i~~~~~~~~~~ 114 (144)
T PF11657_consen 35 RLLEDSAKAQQEQLDQFKEELEEIASRWGEDAKEKAEKILNAALAASKEAMNKILQESAQEIVEAVKSEIDNSLAEVNDL 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665543 5677777778888888888888877 446677777777666666665443
Q ss_pred H
Q 007823 207 A 207 (588)
Q Consensus 207 ~ 207 (588)
+
T Consensus 115 ~ 115 (144)
T PF11657_consen 115 V 115 (144)
T ss_pred H
Confidence 3
No 42
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=69.97 E-value=84 Score=29.77 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007823 143 NEHLKHVEKLCHSLLGIHEKAVIDLK 168 (588)
Q Consensus 143 ~~~l~~~~~~~~sfv~~~~~a~~~l~ 168 (588)
.+.+..|.+..++|+.........|.
T Consensus 26 ~Ev~~aik~~sd~~~~~l~~~~~~l~ 51 (155)
T PF07464_consen 26 QEVVKAIKEQSDSVAQQLQNVSSSLQ 51 (155)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333
No 43
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=69.07 E-value=1.5e+02 Score=30.94 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007823 23 VRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFI 67 (588)
Q Consensus 23 ~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l 67 (588)
+..|..|+.+|..|+..|-+..=.|+.+..+|.+|...++|=++.
T Consensus 157 esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m 201 (305)
T PF14915_consen 157 ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHM 201 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777777777777777777777777777664443
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.41 E-value=1.5e+02 Score=30.71 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHH
Q 007823 11 QLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKL 46 (588)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~ 46 (588)
++..|-.+|-.-+...--|..++......+......
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 555666666666555555556665555555544443
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=67.27 E-value=3.4e+02 Score=34.23 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHh-------hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007823 67 IISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDK-------LNADNRSVVENFQVELAQQIGSLCDIVDLST 139 (588)
Q Consensus 67 l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~-------le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~ 139 (588)
+...+...-..|...-..+...+......++.++.+-.+=.+ ....+...|..=...+......|...+....
T Consensus 300 l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~ 379 (1201)
T PF12128_consen 300 LEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIE 379 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555332221 1233444555555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007823 140 CQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTAS 174 (588)
Q Consensus 140 ~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~ 174 (588)
.+-....+.+...+..+...+..-...++......
T Consensus 380 ~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~ 414 (1201)
T PF12128_consen 380 SKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAER 414 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655444444444444443
No 46
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=67.08 E-value=1.4e+02 Score=29.56 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007823 116 VVENFQVELAQQIGSLCDIVDLSTCQQNEHL 146 (588)
Q Consensus 116 ~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l 146 (588)
....|...|.+.+..|...+..+...+....
T Consensus 8 ~f~~f~~~md~svk~l~~~~~~~~kk~~~~~ 38 (199)
T cd07626 8 AFKKFVKSMDDSVKNLINIAQEQAKKHQGPY 38 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5678999999999999999999998885555
No 47
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=64.89 E-value=2e+02 Score=30.69 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 007823 115 SVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGI 159 (588)
Q Consensus 115 ~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~ 159 (588)
.....|..+|.. +..+...|......|...+..+......|...
T Consensus 237 ~~e~lF~~eL~k-f~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~ 280 (339)
T cd09238 237 SYDALFKEELKK-YDSVREAVSKNISSQDDLLSRLRALNEKFSQI 280 (339)
T ss_pred hhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345558888865 99999999999999999999999999999753
No 48
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=64.19 E-value=2.4e+02 Score=31.49 Aligned_cols=287 Identities=12% Similarity=0.105 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------
Q 007823 76 NALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLK-------- 147 (588)
Q Consensus 76 ~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~-------- 147 (588)
..|......|..++--.-+||..|..|- ....|..+..+-+.--.=....+...+......+.....
T Consensus 108 ~~l~~~~~~L~~ia~~~~~dv~rli~~e-----a~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l 182 (473)
T PF14643_consen 108 KVLRKYVEILEKIAHLLPPDVERLIEKE-----AMEINQALLGNRRAYADLFANLMEAELQRELSYRRRWQDRVDDWRAL 182 (473)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666777778888888772 233344444333322222233333333333332222111
Q ss_pred HHHHHHHHHH---h--------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHhhhhHHHHHHHH
Q 007823 148 HVEKLCHSLL---G--------IHEKAVIDLKKKVTASRALYCSHMEAVQNV---------VRLHKACSNANLEEISAFA 207 (588)
Q Consensus 148 ~~~~~~~sfv---~--------~~~~a~~~l~~~i~~~kd~~~s~le~i~~l---------~~~~k~~~~~~le~lss~~ 207 (588)
.....++.|. . ........++.....+..-...+|..+..+ +..+..++....+.+....
T Consensus 183 ~~~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~ 262 (473)
T PF14643_consen 183 RHERAIQEFREFMASEEFQNPPERKQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYH 262 (473)
T ss_pred hHHHHHHHHHHHhCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223332 1 122234444444444433333344433322 3444444444555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 007823 208 SSNSESIKEFLASEAREAASIYENLQTTLSTQQ----GEM-AIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESK-- 280 (588)
Q Consensus 208 ~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk----~~l-~~~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~-- 280 (588)
..+...|...|.....++.+.++.+...|..-+ +++ ..++...-..........+.--+.|..||+.+..+..
T Consensus 263 ~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~ 342 (473)
T PF14643_consen 263 QQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQ 342 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544577777778777777777665522 111 1112222111111111222222233333332222211
Q ss_pred --hH---HHHHHHhhHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 007823 281 --SL---ENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGH 355 (588)
Q Consensus 281 --~L---~~~~~~~~~~~~~~L~~~~~~~e~~a~~e~~~Ll~~I~~Ll~~~~~~q~~~l~~~~~~l~~~~~~~~~~l~~~ 355 (588)
+| -.-+.+.-+.+...+.....+.... |.+...-.....+.+..-|...++.||.... ...|...
T Consensus 343 ~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~--------l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~--ee~L~~~ 412 (473)
T PF14643_consen 343 SEDLFKFFQEAAQLWDEHRKKLSKQEEELEKR--------LEQCREKHDQENQEKEAKLDIALDRLRQASS--EEKLKEH 412 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 11 1111112222223333333222222 3333333445566677777777777776644 3456666
Q ss_pred hhhhhhhhhhHHHHHHHHHHhh
Q 007823 356 ASSVEGITTDAKRKWQAFAMQA 377 (588)
Q Consensus 356 ~ss~q~~~~~~k~~~~~~~~~~ 377 (588)
....-+.=..++.....|....
T Consensus 413 l~~~~~~Ld~Ie~~Y~~fh~~~ 434 (473)
T PF14643_consen 413 LEKALDLLDQIEEEYEDFHKKQ 434 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 49
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.33 E-value=3.1e+02 Score=32.47 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 154 HSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQ 233 (588)
Q Consensus 154 ~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq 233 (588)
+.|+.....+..++..++..++..+...+..+..+.+..+ .+...-+.+. .++-...+ -++.|...++.++..+.
T Consensus 550 eeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~-~l~~~ae~La---eR~e~a~d-~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 550 EEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERK-SLRESAEKLA---ERYEEAKD-KQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3567777888889999999999999999999888888754 3332222222 22222112 27777777777776554
Q ss_pred H
Q 007823 234 T 234 (588)
Q Consensus 234 ~ 234 (588)
.
T Consensus 625 ~ 625 (717)
T PF10168_consen 625 S 625 (717)
T ss_pred c
Confidence 4
No 50
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=62.32 E-value=1.5e+02 Score=28.29 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=56.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHH
Q 007823 4 QLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKE---------KDFIISEQKKA 74 (588)
Q Consensus 4 ~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~E---------e~~l~~~~~~t 74 (588)
.|++.+.=-+++-.-++..-..+..++++|+..+..+.++-..-..++...+.++..|.| ++-|+.+|.++
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A 86 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEA 86 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 344555545555666667777888999999999999999999999999999999999975 33466666555
Q ss_pred HH
Q 007823 75 EN 76 (588)
Q Consensus 75 E~ 76 (588)
..
T Consensus 87 ~~ 88 (159)
T PF05384_consen 87 HE 88 (159)
T ss_pred HH
Confidence 44
No 51
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.22 E-value=1.3e+02 Score=27.38 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 007823 4 QLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKE 63 (588)
Q Consensus 4 ~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~E 63 (588)
+|+...+...+.+..|..+..+-.+.-+.|...+..+...+..+..++.....++..|.+
T Consensus 32 dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~ 91 (132)
T PF07926_consen 32 DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777778888888776666666777777777777777777777666666666643
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=60.92 E-value=3.6e+02 Score=32.41 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 007823 508 ASIKEKAQETFQ 519 (588)
Q Consensus 508 ~~i~~~~~~~l~ 519 (588)
..|...+..+|.
T Consensus 737 ~~~~~~~~~~~~ 748 (880)
T PRK02224 737 ETLERMLNETFD 748 (880)
T ss_pred HHHHHHHHHHHH
Confidence 444555555555
No 53
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=60.30 E-value=2.8e+02 Score=30.97 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007823 115 SVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKA 163 (588)
Q Consensus 115 ~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a 163 (588)
.++..|...+...-..++..|..-...=...|...-..+...+...+..
T Consensus 11 ~~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d 59 (473)
T PF14643_consen 11 KALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDD 59 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCc
Confidence 5778888888888888888887776666666666666666655444443
No 54
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.58 E-value=2.8e+02 Score=30.60 Aligned_cols=115 Identities=11% Similarity=0.148 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 007823 160 HEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEE-ISAFASSNSESIKEFLASEAREA---ASIYENLQTT 235 (588)
Q Consensus 160 ~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~-lss~~~~~~~~v~~f~~sl~~e~---~sv~~dlq~~ 235 (588)
+...+..|+..+..+|-+|++....++....++..+++..-.. ++.+.++.-.-|+.-..-|..+. -+-++|||..
T Consensus 153 ~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 153 QRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778999999999999999999999998888887765441 22222222233333333444444 4446888999
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 236 LSTQQGEMAI-----FAREMRQRFQVTIERTKDIAEYTNGFLQKL 275 (588)
Q Consensus 236 L~~Qk~~l~~-----~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l 275 (588)
+...+.+++. ..+|++ +..+.+..+..--+.|..|+...
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe-~v~kdi~~a~keL~~m~~~i~~e 276 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLE-TVQKELETARKELKKMEEYIDIE 276 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 9888888876 555555 44556666666666777887733
No 55
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=59.55 E-value=2.4e+02 Score=32.56 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHH
Q 007823 73 KAENALTHQAC---TLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVEN 119 (588)
Q Consensus 73 ~tE~~L~~~A~---~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~ 119 (588)
.-|.+|..... .|..-+..--.|+-+||.++-|+-..+..-....++
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~ 277 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDN 277 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHH
Confidence 33444444443 456666677788999999998888877665554444
No 56
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=57.17 E-value=1.3e+02 Score=27.52 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=5.6
Q ss_pred HHHHHHHhhchhHHH
Q 007823 85 LRGNLEKALQDNVLL 99 (588)
Q Consensus 85 L~~~l~~s~~Dv~gL 99 (588)
+..++...-.||..+
T Consensus 94 v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 94 VREDVSQIGDDVDSV 108 (126)
T ss_pred HHhhHHHHHHHHHHH
Confidence 333333333333333
No 57
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=56.48 E-value=1.9e+02 Score=27.70 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=30.9
Q ss_pred hhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 95 DNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEK 151 (588)
Q Consensus 95 Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~ 151 (588)
++-++-..|..+..+-+.|...=..=...--..|..|-+-|..+..+=......+..
T Consensus 44 ~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir~LA~~t~~~~~~I~~ 100 (213)
T PF00015_consen 44 EILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIRKLAEQTSESAKEISE 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 333444557778888888887766543333444555555554444443333333333
No 58
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=55.24 E-value=2.4e+02 Score=28.60 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHH-------hhHHHHHHHHHHHHHHH-----
Q 007823 115 SVVENFQVELAQQIGSLCDIVDLSTCQQNEHLK--------HVEKLCHSLL-------GIHEKAVIDLKKKVTAS----- 174 (588)
Q Consensus 115 ~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~--------~~~~~~~sfv-------~~~~~a~~~l~~~i~~~----- 174 (588)
..+..|...|.+.+..|......+...+..-.. +....-+.|- .....|+...=.-....
T Consensus 44 e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l~~ 123 (237)
T PF10456_consen 44 ESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDLFA 123 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999998888888776643322 2222222222 11111111111111111
Q ss_pred -------------HHHHHhHHHHHHHHHHHHHHHhh----------------hhHHHHHHHHhhhHHHH-HH---HHHHH
Q 007823 175 -------------RALYCSHMEAVQNVVRLHKACSN----------------ANLEEISAFASSNSESI-KE---FLASE 221 (588)
Q Consensus 175 -------------kd~~~s~le~i~~l~~~~k~~~~----------------~~le~lss~~~~~~~~v-~~---f~~sl 221 (588)
=.+|...|..+-.+...++..+. ..+++|..-|.-++.+| .+ |....
T Consensus 124 ~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~~e~K~~~~~~~~v~~R~d~is~a~lAEm~hfh~~r 203 (237)
T PF10456_consen 124 EQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVKECEKLSDEGKMSQQEAEEVQRRCDVISYAVLAEMNHFHQER 203 (237)
T ss_dssp TSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355566666666666665543 34677788888888777 44 78888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 222 AREAASIYENLQTTLSTQQGEMAIFAREMRQRF 254 (588)
Q Consensus 222 ~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~ 254 (588)
..|+++++ +.+|..|=.--.....+++++.
T Consensus 204 ~~Df~~~m---~~yL~~Qi~Fyq~i~~kLe~a~ 233 (237)
T PF10456_consen 204 VEDFKSMM---KTYLQQQIAFYQQIAEKLEQAL 233 (237)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 7788666554444555555443
No 59
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=54.74 E-value=3.3e+02 Score=29.93 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 007823 13 EELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQL 54 (588)
Q Consensus 13 ~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L 54 (588)
..+...|+.-+..|.++-++|+.....|+.|=+.|..|...+
T Consensus 62 ~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~ 103 (412)
T PF04108_consen 62 SSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPP 103 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCc
Confidence 334445555555555555555555555555555555544444
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.47 E-value=2.4e+02 Score=28.33 Aligned_cols=102 Identities=14% Similarity=0.229 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--
Q 007823 8 HQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTL-- 85 (588)
Q Consensus 8 ~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L-- 85 (588)
..+.+......+..-...+..|...+......|+.+...|..+...|..+...+.|-+--++.+..-.....+....|
T Consensus 20 ~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~ 99 (237)
T PF00261_consen 20 AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQ 99 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444554555666666666666677777777777777777777777776655655555544444444433
Q ss_pred -HHHHHHhhchhHHHhHhhhhhHhh
Q 007823 86 -RGNLEKALQDNVLLFQKIGREDKL 109 (588)
Q Consensus 86 -~~~l~~s~~Dv~gLh~Kl~Rk~~l 109 (588)
+..+.....|+..-|.-+.||-.+
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~ 124 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKV 124 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666667776544
No 61
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.47 E-value=3.9e+02 Score=30.45 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=106.6
Q ss_pred CccchhhHHHHHHHHHHHHHHH--------------HHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------
Q 007823 1 MGVQLETHQKQLEELQDKYDCQ--------------VRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQY------- 59 (588)
Q Consensus 1 me~~le~~~k~~~~~~~~~~~~--------------~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~------- 59 (588)
||-.++..+.+++.|++.|+.. .....+|+.+++..+..++.++..|+.|+.-|.+...
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~ 85 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR 85 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456677777888888888765 2334566666666666666666666666666554432
Q ss_pred -HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHh---hHHHHHHHHHHHHHHHHHHHHHH
Q 007823 60 -ALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNAD---NRSVVENFQVELAQQIGSLCDIV 135 (588)
Q Consensus 60 -~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~---Nr~~~~~f~~~l~~~~~~l~~~v 135 (588)
-+.-++-|+..-..-|.-+...--.|-+.|...-..+..-..-++|-.++.+. |..++. ..=..|.+-|
T Consensus 86 ~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E-------~qR~rlr~el 158 (772)
T KOG0999|consen 86 DGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVE-------DQRRRLRDEL 158 (772)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH-------HHHHHHHHHH
Confidence 23344555655566666666665555555555555555544445554444332 222222 2223344455
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH------hh------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Q 007823 136 DLSTCQQNEHLKHVEKLCHSLL------GI------HEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEI 203 (588)
Q Consensus 136 ~~~~~qQ~~~l~~~~~~~~sfv------~~------~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~l 203 (588)
.++--.-..+|+.|++.=+.-+ +. ..+....=-+++..--.++++.+++.-.+...-.......|+.+
T Consensus 159 Ke~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTl 238 (772)
T KOG0999|consen 159 KEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETL 238 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556665555433222 11 11122222233333346788888777777666666666666555
Q ss_pred HHH
Q 007823 204 SAF 206 (588)
Q Consensus 204 ss~ 206 (588)
...
T Consensus 239 q~E 241 (772)
T KOG0999|consen 239 QQE 241 (772)
T ss_pred HhH
Confidence 443
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.45 E-value=2.3e+02 Score=31.33 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007823 11 QLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYAL 61 (588)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l 61 (588)
|++..+.-|+...+..-.++.++..++..-..-...|.++...+++....|
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 63
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=51.46 E-value=4.8e+02 Score=31.23 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 8 HQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRG 87 (588)
Q Consensus 8 ~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~ 87 (588)
...+++.+...=..-.-.+.....+++.++..|.+....|...+..|..++..-..=+.=+.+....-+.|..+...+-.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHH
Q 007823 88 NLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELA 125 (588)
Q Consensus 88 ~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~ 125 (588)
.+.....=|+.|-..|.-.+.....+-.-+..+..++.
T Consensus 674 E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~ 711 (769)
T PF05911_consen 674 EAEELQSKISSLEEELEKERALSEELEAKCRELEEELE 711 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
No 64
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=50.81 E-value=2.7e+02 Score=27.89 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhh---------
Q 007823 139 TCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASS--------- 209 (588)
Q Consensus 139 ~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~~~--------- 209 (588)
...|..+++.--..++.|+..+.........+..+++|-.......+...+++-.-....+|..++..++.
T Consensus 9 rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v 88 (219)
T PF06730_consen 9 RDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEV 88 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666666677777778888888888888877777777765554444455544443333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007823 210 --NSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFA 247 (588)
Q Consensus 210 --~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~ 247 (588)
+-..|-+=|..-+..+|..-++|.........++...+
T Consensus 89 ~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~ 128 (219)
T PF06730_consen 89 ERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLK 128 (219)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333111666666777888888888888888877655
No 65
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.70 E-value=2.5e+02 Score=27.12 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhH-hhHHHHHHHHHHHHHHHH
Q 007823 78 LTHQACTLRGNLEKALQDNVLLFQKIGREDKLNA-DNRSVVENFQVELAQQIG 129 (588)
Q Consensus 78 L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~-~Nr~~~~~f~~~l~~~~~ 129 (588)
|..++..+.+.+..-......|...|..=...+. .--.+++.-+.-+.+...
T Consensus 8 l~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~ 60 (204)
T PF04740_consen 8 LHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHI 60 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHH
Confidence 4555566666666666666666665554433333 334455555555555333
No 66
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.59 E-value=1.1e+02 Score=30.61 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=45.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhH
Q 007823 29 LTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGRED 107 (588)
Q Consensus 29 lk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~ 107 (588)
+..++..+..+++..++.|+.+...|..+.... ..|..|+.++....+.-..|-+.|.+.|+++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~--------------~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKV--------------DALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 455566666666666666666666666665443 34667788888888888899999988887654
No 67
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.11 E-value=5.7e+02 Score=30.28 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=65.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHhhhhHHHHHHHHHH
Q 007823 227 SIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYED 306 (588)
Q Consensus 227 sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~~L~~~~~~~~~~~~~~L~~~~~~~e~ 306 (588)
.+-++|++.|++-...|-+++.++--++......=.+....|..-++.|-+-+..| +.-+..-|-+|.+.|.+
T Consensus 776 ~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL-------~~L~~D~Lpef~arF~~ 848 (1104)
T COG4913 776 EHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARL-------QTLTEDALPEFLARFQE 848 (1104)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHH-------HhhhhhhHHHHHHHHHH
Confidence 56677788888888888778877777776665554455555555566555555555 44455566667666665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007823 307 QTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAV 346 (588)
Q Consensus 307 ~a~~e~~~Ll~~I~~Ll~~~~~~q~~~l~~~~~~l~~~~~ 346 (588)
.--.--.. .|+. |.+++.+-...+.+||..|+.++.
T Consensus 849 llN~~S~~---~v~q-~~~~L~~er~~IeERIe~IN~SL~ 884 (1104)
T COG4913 849 LLNRSSDD---GVTQ-LLSHLDHERALIEERIEAINDSLR 884 (1104)
T ss_pred Hhhhcccc---hHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 42211111 3333 233455555666777777776654
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.06 E-value=6e+02 Score=30.45 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHH
Q 007823 81 QACTLRGNLEKALQDNVLLFQKIGREDKLNADNRS 115 (588)
Q Consensus 81 ~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~ 115 (588)
-+..+.++...+..--+.+-+-+.|+..+-..|++
T Consensus 766 ~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~ 800 (970)
T KOG0946|consen 766 DIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN 800 (970)
T ss_pred HHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh
Confidence 33444555554544455555556666666666655
No 69
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.99 E-value=3.1e+02 Score=27.21 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q 007823 142 QNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEIS 204 (588)
Q Consensus 142 Q~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~ls 204 (588)
|..++...-+.++.++.....+...+-.+...+++-....-.++..+.+.=......+|..++
T Consensus 5 ~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 5 QTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 333333444444444444444444444555555544444444444444333333333333333
No 70
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=45.89 E-value=4.9e+02 Score=29.37 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007823 293 QMKSIADFQKAYEDQTKSDTEKLIADVTSLVSS 325 (588)
Q Consensus 293 ~~~~L~~~~~~~e~~a~~e~~~Ll~~I~~Ll~~ 325 (588)
+.+++.--..+-+..|. .-.+....|..+|..
T Consensus 390 ~GrGFAVVA~EVr~LA~-~t~~st~~I~~~i~~ 421 (553)
T PRK15048 390 QGRGFAVVAGEVRNLAS-RSAQAAKEIKALIED 421 (553)
T ss_pred CCCCChhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44455444444444443 334445567666654
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.04 E-value=6e+02 Score=30.15 Aligned_cols=364 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------
Q 007823 4 QLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAE-------- 75 (588)
Q Consensus 4 ~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE-------- 75 (588)
+|...++|+.-+...=..=...+.++...|+.++..|.+-...+..+...+...+.-...++.........+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~ 345 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGD 345 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccc
Q ss_pred ---------HHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007823 76 ---------NALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHL 146 (588)
Q Consensus 76 ---------~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l 146 (588)
+.|-..-.....-+..--.++..|.+|+..-..=....+..|..-...+...+..++.....- ++.+
T Consensus 346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~----qeri 421 (717)
T PF09730_consen 346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRED----QERI 421 (717)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007823 147 KHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAA 226 (588)
Q Consensus 147 ~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~ 226 (588)
..|+..+.. -.....+...++..+.|.+.++.+.|..+-.-|...-|.+.+-+ |.++|.....-..
T Consensus 422 ~~LE~ELr~----l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRV----------mLD~yr~~r~~~~ 487 (717)
T PF09730_consen 422 SELEKELRA----LSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRV----------MLDYYRQGRQTRR 487 (717)
T ss_pred HHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccH----------HHHHHHhhhhhhc
Q ss_pred -------------------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 227 -------------------------------------------SIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKD 263 (588)
Q Consensus 227 -------------------------------------------sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~~ 263 (588)
+.+.|+..-...-...++-++.|++. +++++.+.-.
T Consensus 488 ~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~~~s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikh-L~~av~~t~e 566 (717)
T PF09730_consen 488 ESSSVEERGLSSPILTDRGASSREMITSESGESSPSPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKH-LQRAVDRTTE 566 (717)
T ss_pred cCCCcccccccCcccccccccccccccCCCCCCCCCCCCCCCCCccchhccCCcchhhHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 007823 264 IAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVE-------- 335 (588)
Q Consensus 264 ~s~~l~~fl~~l~~~~~~L~~~~~~~~~~~~~~L~~~~~~~e~~a~~e~~~Ll~~I~~Ll~~~~~~q~~~l~-------- 335 (588)
.+..-.. .. ..-..+..+...|+++|-. |.+.+..+..-++
T Consensus 567 ~srq~~~-~~-----------------------------~~~~~~d~d~e~l~eqilK-LKSLLSTKREQIaTLRTVLKA 615 (717)
T PF09730_consen 567 LSRQRVA-SR-----------------------------SSASEADKDKEELQEQILK-LKSLLSTKREQIATLRTVLKA 615 (717)
T ss_pred HHhhhcc-cc-----------------------------ccCCcccccHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHhhhhhhh
Q 007823 336 ------ARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESA 409 (588)
Q Consensus 336 ------~~~~~l~~~~~~~~~~l~~~~ss~q~~~~~~k~~~~~~~~~~e~~~~e~~~~~~~~~~~mE~~lq~~~~~~~~s 409 (588)
.++.+|+..+......+-..|...-.-=+.+|++..+|..-- .+.-. +|+.=
T Consensus 616 NKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlR-------------------amFa~---RCdEY 673 (717)
T PF09730_consen 616 NKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLR-------------------AMFAA---RCDEY 673 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHH---HHHHH
Q ss_pred hHHHHHHHHHHHHhhhHhHHHHHHHHHHhhh
Q 007823 410 FGHWKRTYESVNEMESKHVSSMISLTRNASY 440 (588)
Q Consensus 410 v~~~~~~~~ql~~l~~~q~~~ld~~v~~~~~ 440 (588)
|.++.-.+.++..-. .....|+++++-|++
T Consensus 674 vtQldemqrqL~aAE-dEKKTLNsLLRmAIQ 703 (717)
T PF09730_consen 674 VTQLDEMQRQLAAAE-DEKKTLNSLLRMAIQ 703 (717)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
No 72
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.34 E-value=3.7e+02 Score=27.32 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007823 220 SEAREAASIYENLQTTLSTQQGEMAIFAREMRQR 253 (588)
Q Consensus 220 sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~ 253 (588)
....+-..+...|...|+.+...|..++..++++
T Consensus 171 ~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA 204 (264)
T PF06008_consen 171 KPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEA 204 (264)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443
No 73
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.18 E-value=6.1e+02 Score=29.74 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007823 160 HEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFA 207 (588)
Q Consensus 160 ~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~ 207 (588)
-.+.+.+++.++..+++.+..-++.+..+..+++.-++.-.-..+..+
T Consensus 158 sl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 158 SLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTV 205 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch
Confidence 447888999999999999999999998888888755443333333333
No 74
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.44 E-value=3.3e+02 Score=26.43 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=46.7
Q ss_pred HHHHHHHHHH---HHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 13 EELQDKYDCQ---VRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNL 89 (588)
Q Consensus 13 ~~~~~~~~~~---~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l 89 (588)
+++.++|... .+...++..++...+..+......|...+..+...+..+..-+..+....++=+.|.+--..|--.
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~- 159 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ- 159 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455555553 455666667777777777777777777777776666666665555555544444333322222111
Q ss_pred HHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHH
Q 007823 90 EKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSL 131 (588)
Q Consensus 90 ~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l 131 (588)
.+-| =+|.++++..|+.++..+-..+..-.+.|
T Consensus 160 ------~~~~---e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 160 ------LNML---EEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp ------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 25667899999999998887777665554
No 75
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=42.19 E-value=4e+02 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 007823 225 AASIYENLQTTLSTQQGEMAIF 246 (588)
Q Consensus 225 ~~sv~~dlq~~L~~Qk~~l~~~ 246 (588)
+......|...+..|...+..+
T Consensus 202 ~~~~~~~i~~~~~~Q~~ll~~i 223 (296)
T PF13949_consen 202 FDPLQNRIQQNLSKQEELLQEI 223 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666555543
No 76
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.15 E-value=1.5e+02 Score=29.43 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 007823 6 ETHQKQLEELQDKYDC 21 (588)
Q Consensus 6 e~~~k~~~~~~~~~~~ 21 (588)
...++|+.+++.....
T Consensus 96 p~le~el~~l~~~l~~ 111 (206)
T PRK10884 96 PDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 77
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.03 E-value=4e+02 Score=27.07 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHhhhhH
Q 007823 218 LASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSI 297 (588)
Q Consensus 218 ~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~~L~~~~~~~~~~~~~~L 297 (588)
+..+-.++..++++|++.= | ..++..+...+..|...-..+..+|.........|-..+...=.....+|
T Consensus 125 l~~~l~ea~~mL~emr~r~---------f-~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL 194 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMRKRD---------F-TPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKL 194 (264)
T ss_pred HHHHHHHHHHHHHHHHhcc---------c-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5556666777776664431 1 12334444555556666667777777777777777555555555566667
Q ss_pred HHHHHHHHHhh
Q 007823 298 ADFQKAYEDQT 308 (588)
Q Consensus 298 ~~~~~~~e~~a 308 (588)
.+++....+..
T Consensus 195 ~Dl~~~l~eA~ 205 (264)
T PF06008_consen 195 QDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHH
Confidence 77766665554
No 78
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.94 E-value=4e+02 Score=27.04 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHH--------HHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 4 QLETHQKQLEELQD--------KYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAE 75 (588)
Q Consensus 4 ~le~~~k~~~~~~~--------~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE 75 (588)
+.+....+++++=+ ...........++..+...+..++..+..+......+...+..+..+.-.+.++....
T Consensus 35 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~ 114 (302)
T PF10186_consen 35 ENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLV 114 (302)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHh
Q 007823 76 NALTHQACTLRGNLEKALQDNVLLFQKIGREDK 108 (588)
Q Consensus 76 ~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~ 108 (588)
+........+...+...-..+..|...+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 115 ESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.70 E-value=9.7e+02 Score=31.09 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007823 155 SLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRL 191 (588)
Q Consensus 155 sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~ 191 (588)
+++..|..-..++..++..++..|...-.+++.+...
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444444444443333
No 80
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=39.52 E-value=4.5e+02 Score=27.15 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007823 59 YALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLS 138 (588)
Q Consensus 59 ~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~ 138 (588)
..|.|+..-|..-..-=.+|..-+..|-.|+..+.. ||+.|=+++..=+.-..+|...|.. -.+.|..|
T Consensus 118 k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa-------~lEKKFqI~~~FKekLesfa~~L~~----KS~eI~tF 186 (353)
T PF01540_consen 118 KKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIA-------KLEKKFQIDKDFKEKLESFADLLNK----KSREIDTF 186 (353)
T ss_pred HHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHH-------HHHHhcCCcHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 345677666666666666788888888888887764 4555555554433334444433333 24567778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 139 TCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 139 ~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
...++..-...-..++||-.--. ....+++..+..+.+++++=...+.
T Consensus 187 ttv~s~k~eF~L~ELESFKEinT-------twfNgmksEWA~V~~AwkneLsEIN 234 (353)
T PF01540_consen 187 TTVQSTKEEFVLNELESFKEINT-------TWFNGMKSEWARVQEAWKNELSEIN 234 (353)
T ss_pred HhhccchhhhhHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666532111 1223555566666666555444444
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.37 E-value=7.2e+02 Score=29.21 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=61.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 201 EEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFARE------MRQRFQVTIERTKDIAEYTNGFLQK 274 (588)
Q Consensus 201 e~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~q------l~~~~~~~~~~~~~~s~~l~~fl~~ 274 (588)
+.||...-..++-|.. |..-..++..+....-+.|.....+...+.+- .+...+-.+....++.+.-.+.+..
T Consensus 463 EkLSK~ql~qs~iIkK-LRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~ 541 (961)
T KOG4673|consen 463 EKLSKKQLAQSAIIKK-LRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSN 541 (961)
T ss_pred HHhHHHHHHHHHHHHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455444444444444 33334444444444444444444444443322 2222223333444444444444444
Q ss_pred HHHHhhhHHHHHHHhhHHhhhhHHHHHHHHHHh---hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 007823 275 LLEESKSLENYAVQADENQMKSIADFQKAYEDQ---TKSDTEKLIADVTSLVS------SHMRRQTELVEARLVDFRE 343 (588)
Q Consensus 275 l~~~~~~L~~~~~~~~~~~~~~L~~~~~~~e~~---a~~e~~~Ll~~I~~Ll~------~~~~~q~~~l~~~~~~l~~ 343 (588)
....+..|+.-.-.-|...+.--.+++++.+-. +..+++.|+-++..|=- ..++++..++..-+..|+.
T Consensus 542 sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~Lqr 619 (961)
T KOG4673|consen 542 SRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQR 619 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333222333333333666665543 23334445555554322 2334445555555555443
No 82
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=38.16 E-value=5e+02 Score=27.34 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDF 66 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~ 66 (588)
+....-.+.+|.+.|..---....|.++--...=..+-.++.|++.++.|...++.+.|+.-
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~ 140 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIR 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777788877655555566555555556666677777777777777777766533
No 83
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.15 E-value=3.1e+02 Score=24.90 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007823 83 CTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQ 141 (588)
Q Consensus 83 ~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~q 141 (588)
..|+..+...-..+..|-...+-=...-..++..|..=...+...+..+..++.+...|
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777777777777778889999999999999999999999998743
No 84
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.94 E-value=5.7e+02 Score=27.61 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 115 SVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 115 ~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
.=|...-.+|....+.|...+ ..=..+|..+...+..-+..-..-..-+..++..+-..|.+....+..+.+..+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~----~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~ 290 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESAL----PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYK 290 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333 233344455555555554444444444555555555555555544444444443
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.68 E-value=7e+02 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007823 197 NANLEEISAFASSNSESIKEFLASEAREA 225 (588)
Q Consensus 197 ~~~le~lss~~~~~~~~v~~f~~sl~~e~ 225 (588)
+-.++.+...+..+...|+.+|..+-.+.
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~lekE~ 302 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDILEREV 302 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555443
No 86
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.38 E-value=7.6e+02 Score=29.57 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 11 QLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKD-FIISEQKKAENALTHQACTLRGNL 89 (588)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~-~l~~~~~~tE~~L~~~A~~L~~~l 89 (588)
-++.-++.+......+.++-.+|+.-+..+++....++.....+...+..|+++. .+.....+-...+...|..++.
T Consensus 498 ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~-- 575 (771)
T TIGR01069 498 IIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALK-- 575 (771)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445556666666677777777777777777777777777777777777776533 2333333333334444444443
Q ss_pred HHhhchhHHHhHhhhh
Q 007823 90 EKALQDNVLLFQKIGR 105 (588)
Q Consensus 90 ~~s~~Dv~gLh~Kl~R 105 (588)
++-..+..+..+|..
T Consensus 576 -~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 576 -ALKKEVESIIRELKE 590 (771)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 334456666666654
No 87
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=36.38 E-value=4.3e+02 Score=26.02 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=25.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 007823 130 SLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCS 180 (588)
Q Consensus 130 ~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s 180 (588)
.+..++..+.+.-.+.+..+....++| +..+..+++.++..+-+++..
T Consensus 22 ~i~~t~e~~~d~~~~~l~~~~~qa~~y---~~~~~~elR~qv~~l~~~l~~ 69 (208)
T PF14644_consen 22 MIPETFEQCADNLVQKLQSYQEQADEY---HNSCLQELRNQVERLEELLPK 69 (208)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666665 334555666666555444333
No 88
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.10 E-value=2.6e+02 Score=29.46 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISE 70 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~ 70 (588)
+++....++++++.|-..++.|-+. ...|+.-+.....+...+...+..|.+.+-+|..
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK-------~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREK-------IRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444333 3334444455555555555555556666666644
No 89
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.84 E-value=4.7e+02 Score=26.34 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=29.9
Q ss_pred HhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHH
Q 007823 25 QCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKE--KDFIIS 69 (588)
Q Consensus 25 ~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~E--e~~l~~ 69 (588)
...+|+.+.+-+=+.|.+....+...+++++..+..|+| ++|.-.
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777777777777777777766 555444
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.71 E-value=6.4e+02 Score=27.84 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007823 7 THQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALK 62 (588)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~ 62 (588)
..+++|.++......+...+..|.+++...+..+..+.+.|-.|...|.+.+..+.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 33344444444444444444444444444444444444444444444444443333
No 91
>PRK10626 hypothetical protein; Provisional
Probab=35.58 E-value=4.9e+02 Score=26.47 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007823 139 TCQQNEHLKHVEKLCHSLL 157 (588)
Q Consensus 139 ~~qQ~~~l~~~~~~~~sfv 157 (588)
-..|++.+..|+..+..+|
T Consensus 66 ~~~Qqq~~~~Yq~~lr~~l 84 (239)
T PRK10626 66 NAAQRQQAKDYQAALRQDL 84 (239)
T ss_pred CHHHHHHHHHHHHHHHHHC
Confidence 3566777777777776665
No 92
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.41 E-value=7.2e+02 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=15.1
Q ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHH
Q 007823 190 RLHKACSNANLEEISAFASSNSESIKE 216 (588)
Q Consensus 190 ~~~k~~~~~~le~lss~~~~~~~~v~~ 216 (588)
..++.+.+.+++++..........+..
T Consensus 314 ~~LkrKyg~s~e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 314 KRLKRKYGASVEEVLEYAEKIKEELDQ 340 (563)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 334556666666666555555555543
No 93
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.53 E-value=4.7e+02 Score=25.88 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 007823 270 GFLQKLLEESKSLENYAV 287 (588)
Q Consensus 270 ~fl~~l~~~~~~L~~~~~ 287 (588)
+-|..|..+...|+.-|+
T Consensus 170 ~e~~~~~~di~~Li~~m~ 187 (201)
T PF11172_consen 170 GEFSSIESDISQLIKEME 187 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 94
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=33.43 E-value=4.5e+02 Score=25.36 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=32.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007823 177 LYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQ 252 (588)
Q Consensus 177 ~~~s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~ 252 (588)
.+..++..++.-+...+..+.....+|......+..++.. |++....++..|....+.+..++.++..
T Consensus 107 ~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~--------l~~~~~~l~~~l~~~~g~I~~L~~~I~~ 174 (184)
T PF05791_consen 107 DLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRN--------LKTDVDELQSILAGENGDIPQLQKQIEN 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433 3444455566666666666666655543
No 95
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.34 E-value=5.2e+02 Score=26.12 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 78 LTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLL 157 (588)
Q Consensus 78 L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv 157 (588)
+...-..|...|..-+.++..+...+.++.+.-...-.....-...+...+..|...=..|...+.+.-. +....
T Consensus 72 ~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~-~~~~~---- 146 (261)
T cd07648 72 LSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELER-LRREN---- 146 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcc----
Confidence 3333344444554555666666655544433222211111122223333444444444444433333221 11110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007823 158 GIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAF 206 (588)
Q Consensus 158 ~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~ 206 (588)
.-.+-+..+..++.++++.|.+.++.+..++..+......+|+.+-..
T Consensus 147 -~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~l 194 (261)
T cd07648 147 -ASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEI 194 (261)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344567777788888888888888888888776666555554433
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.20 E-value=4.4e+02 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=14.8
Q ss_pred HhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 25 QCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQ 58 (588)
Q Consensus 25 ~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk 58 (588)
....+.++++..+..+.+....|...+..+....
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444444444444444444444444444443
No 97
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=33.10 E-value=4.7e+02 Score=25.51 Aligned_cols=10 Identities=30% Similarity=0.162 Sum_probs=4.1
Q ss_pred hhHhhhHhhH
Q 007823 105 REDKLNADNR 114 (588)
Q Consensus 105 Rk~~le~~Nr 114 (588)
+...+-..|.
T Consensus 105 ~~~~~la~na 114 (262)
T smart00283 105 DQTNLLALNA 114 (262)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.99 E-value=6e+02 Score=26.83 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHHHHHHHHHHH------HHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007823 1 MGVQLETHQKQLEELQDKYDCQV------RQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKA 74 (588)
Q Consensus 1 me~~le~~~k~~~~~~~~~~~~~------~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~t 74 (588)
|+..++.-.++.+........-. ....++.++++..+..-......|..++.........+.+-+--...+...
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp ----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHhHhhh
Q 007823 75 ENALTHQACTLRGNLEKALQDNVLLFQKIG 104 (588)
Q Consensus 75 E~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~ 104 (588)
|......=..+.-.+..-..+..+|-..++
T Consensus 94 E~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 94 EEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 99
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=32.19 E-value=8.1e+02 Score=27.93 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHhHhhh
Q 007823 79 THQACTLRGNLEKALQDNVLLFQKIG 104 (588)
Q Consensus 79 ~~~A~~L~~~l~~s~~Dv~gLh~Kl~ 104 (588)
.+.-+.....+++-.-|+.+|-+|..
T Consensus 73 ~di~~~~fadvEE~lfeAE~~~dkfr 98 (570)
T COG4477 73 DDIVTNSFADVEEHLFEAEALADKFR 98 (570)
T ss_pred HHHHHhhcccHHHHHHHHHHhhhhhh
Confidence 33444555555555556666666543
No 100
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=32.15 E-value=7.9e+02 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=18.4
Q ss_pred HHHHHHHHhhchhHHHhHhhhhhHhh
Q 007823 84 TLRGNLEKALQDNVLLFQKIGREDKL 109 (588)
Q Consensus 84 ~L~~~l~~s~~Dv~gLh~Kl~Rk~~l 109 (588)
..++.|+.+..=|..|..||++-..-
T Consensus 59 ~~l~ELe~akr~veel~~kLe~~~~~ 84 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLEKAQAE 84 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777788888888765543
No 101
>PLN02939 transferase, transferring glycosyl groups
Probab=31.91 E-value=1.1e+03 Score=29.21 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=27.5
Q ss_pred HHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007823 24 RQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALT 79 (588)
Q Consensus 24 ~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~ 79 (588)
..|..|+.++--.+.+++-.+..|....+.=...-.--+|...+-+.+..-|.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555555543222222222222455555555555555553
No 102
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.87 E-value=4.6e+02 Score=25.02 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007823 120 FQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVI----DLKKKVTASRALYCSHMEAVQNVVRLHKAC 195 (588)
Q Consensus 120 f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~----~l~~~i~~~kd~~~s~le~i~~l~~~~k~~ 195 (588)
|-..|...+..+...+...+..+.+.-..+...-..| ........ .|..-+..+-+.+..........+......
T Consensus 12 ~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~-~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (218)
T cd07596 12 YILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKAL-IKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQELVK 90 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666655555555444333333 22222221 245555555555555555555555555555
Q ss_pred hhhhHHHHHHHHhhhHHHH
Q 007823 196 SNANLEEISAFASSNSESI 214 (588)
Q Consensus 196 ~~~~le~lss~~~~~~~~v 214 (588)
++..+......+.++-..+
T Consensus 91 ~~e~L~~y~~~~~s~k~~l 109 (218)
T cd07596 91 LLEPLKEYLRYCQAVKETL 109 (218)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 6666665555555554444
No 103
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=31.53 E-value=6.6e+02 Score=26.69 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 007823 118 ENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGI 159 (588)
Q Consensus 118 ~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~ 159 (588)
.-|..+|...++.+...|......|...+..+......|+..
T Consensus 239 ~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~ 280 (339)
T cd09235 239 AISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKE 280 (339)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778877899999999999999999999999999999743
No 104
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=31.35 E-value=5.7e+02 Score=25.95 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhchhHHH-hHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007823 73 KAENALTHQACTLRGNLE-KALQDNVLL-FQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVE 150 (588)
Q Consensus 73 ~tE~~L~~~A~~L~~~l~-~s~~Dv~gL-h~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~ 150 (588)
.-|++|...+..|++-.+ .+-.|-.+| ++|+-|=..+-..=+..+..-...+.+....+..-...+...-.+.+.-|.
T Consensus 44 eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~ 123 (238)
T PF14735_consen 44 EIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQ 123 (238)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999997 333444444 888766666655555666666677777777777777777777777777777
Q ss_pred HHHHHHH----hhHHHHHHH-HHHHHHH----HH--------HHHH-hHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 007823 151 KLCHSLL----GIHEKAVID-LKKKVTA----SR--------ALYC-SHMEAVQNVVRLHKACSNANLEEISAFASSNSE 212 (588)
Q Consensus 151 ~~~~sfv----~~~~~a~~~-l~~~i~~----~k--------d~~~-s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~ 212 (588)
..+..|- +..+++..+ |..+... ++ +.|. ..+.+++.++..+.......-.++. ..-.
T Consensus 124 ~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~----~a~~ 199 (238)
T PF14735_consen 124 KLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRKIRDHLEEAIEELEQELQ----KARQ 199 (238)
T ss_pred HHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 7666654 222222222 2222221 12 2222 2456666666666544333333333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007823 213 SIKEFLASEAREAASIYEN 231 (588)
Q Consensus 213 ~v~~f~~sl~~e~~sv~~d 231 (588)
.+.. |.++|.+|+.+...
T Consensus 200 ~L~~-Ye~lg~~F~~ivre 217 (238)
T PF14735_consen 200 RLES-YEGLGPEFEEIVRE 217 (238)
T ss_pred HHHH-HhcccHhHHHHHHH
Confidence 3344 88999997777643
No 105
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.21 E-value=7.6e+02 Score=27.33 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Q 007823 62 KEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQ-VELAQQIGSLCDIVDLSTC 140 (588)
Q Consensus 62 ~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~-~~l~~~~~~l~~~v~~~~~ 140 (588)
+|-+.||-++.++|..|-...+ -.--..|..=|.+--.++..|-+...+-. .+|...-+
T Consensus 309 kelE~lR~~L~kAEkele~nS~---------wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake----------- 368 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSS---------WSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKE----------- 368 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------
Confidence 5778888888888888865411 11112233334444444433322222111 11211111
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 141 QQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 141 qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
.....-+.=.+.++.|...+..+..++..+|-.+|.-+..+-.++.+-..-++
T Consensus 369 ~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWq 421 (575)
T KOG4403|consen 369 MAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQ 421 (575)
T ss_pred HHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223345567788888888888888888888877777666665444443
No 106
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.17 E-value=4.4e+02 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 24 RQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQ 58 (588)
Q Consensus 24 ~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk 58 (588)
..++|+|..++.|+..|+++...=+.+-..|....
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666554444443333333
No 107
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.74 E-value=4.1e+02 Score=28.41 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=69.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Q 007823 2 GVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKE-KDFIISEQKKAENALTH 80 (588)
Q Consensus 2 e~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~E-e~~l~~~~~~tE~~L~~ 80 (588)
+.+.+..++++.++++....-.+...++.+-...|...+..-+..|.+....|+..+..... +.-.++ +-++.+ .
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~---~L~~~I-k 78 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIE---KLEEDI-K 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHH---HHHHHH-H
Confidence 35677888999999999988888888999999999999999999999999999988754332 222222 223332 3
Q ss_pred HHHHHHHHHHHhhchhHHHhHhh
Q 007823 81 QACTLRGNLEKALQDNVLLFQKI 103 (588)
Q Consensus 81 ~A~~L~~~l~~s~~Dv~gLh~Kl 103 (588)
.+...+.+.+....--+|+|=+|
T Consensus 79 ~r~~~l~DmEa~LPkkNGlyL~l 101 (330)
T PF07851_consen 79 ERRCQLFDMEAFLPKKNGLYLRL 101 (330)
T ss_pred HHHhhHHHHHhhCCCCCCcccce
Confidence 34445556666666667887773
No 108
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.97 E-value=8.1e+02 Score=27.29 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhH
Q 007823 32 KLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNA 111 (588)
Q Consensus 32 ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~ 111 (588)
-|.+....|.++.....+.......++..|.++........+.++ ..+.. +.-+++.-.|+-++-.-+.|+..+-.
T Consensus 294 yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e---~e~~e-~~~IqeleqdL~a~~eei~~~eel~~ 369 (521)
T KOG1937|consen 294 YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLE---TEDEE-IRRIQELEQDLEAVDEEIESNEELAE 369 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc---chHHH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444455555555555555555566555554443333322221 12233 44455555555555555555555443
No 109
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=29.11 E-value=8.7e+02 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007823 316 IADVTSLVSSHMRRQTELVE 335 (588)
Q Consensus 316 l~~I~~Ll~~~~~~q~~~l~ 335 (588)
+.+|..+|.+ ++.|++||+
T Consensus 359 I~~i~~~I~~-Ia~QTNLLA 377 (553)
T PRK15048 359 IADIISVIDG-IAFQTNILA 377 (553)
T ss_pred HHHHHHHHHH-HHHHHHHHH
Confidence 5566666665 889999998
No 110
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.93 E-value=9.2e+02 Score=27.60 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007823 76 NALTHQACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHS 155 (588)
Q Consensus 76 ~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~s 155 (588)
..+...+..|..--+.-.+|+.-+-.|+ +-+..+..-|..++.+-...|....+.|...++.
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer------------------~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREER------------------KSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3455566666666666555555554442 2344555667788888888999999999999988
Q ss_pred HHhh---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 007823 156 LLGI---HEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNA 198 (588)
Q Consensus 156 fv~~---~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~ 198 (588)
|-++ ...|..+-++.+. ..+-.+.++++-.+++++++..
T Consensus 646 ~~~~lp~l~~AErdFk~Elq----~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 646 FHSELPVLSDAERDFKKELQ----LIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred ccccCCcchhHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHH
Confidence 8755 3445566666554 3444555666666666655544
No 111
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.91 E-value=6.4e+02 Score=25.78 Aligned_cols=34 Identities=6% Similarity=0.257 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007823 294 MKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHM 327 (588)
Q Consensus 294 ~~~L~~~~~~~e~~a~~e~~~Ll~~I~~Ll~~~~ 327 (588)
...|.+-|.+|.+++..--+.++..|.+++.+..
T Consensus 203 l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~~ 236 (248)
T cd07619 203 FQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAWV 236 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444445889999988888888888877766543
No 112
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.70 E-value=3.5e+02 Score=22.62 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDF 66 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~ 66 (588)
|+.-..+|+.+...+..-.....+.+.++..--..++.-++.+-+.+....+.|..++||--
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~ 67 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555555778888888888888999999999999999999999977643
No 113
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=28.20 E-value=4.1e+02 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 225 AASIYENLQTTLSTQQGEMAIFAREMR 251 (588)
Q Consensus 225 ~~sv~~dlq~~L~~Qk~~l~~~~~ql~ 251 (588)
..+|+++.--...++...+..+..+.-
T Consensus 70 l~~I~~n~~lT~~q~~~~I~~l~~~~~ 96 (113)
T PF02520_consen 70 LSAILDNKSLTRQQQQEAIDALRKQYP 96 (113)
T ss_pred HHHHHcCcccCHHHHHHHHHHHHHHCC
Confidence 334444444455555555554444443
No 114
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=27.54 E-value=4.8e+02 Score=31.02 Aligned_cols=80 Identities=9% Similarity=0.164 Sum_probs=50.5
Q ss_pred hhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHH----------hhH
Q 007823 104 GREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTC-------------QQNEHLKHVEKLCHSLL----------GIH 160 (588)
Q Consensus 104 ~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~-------------qQ~~~l~~~~~~~~sfv----------~~~ 160 (588)
=++.++....|-+|...+..+-=+..+++..|..-.. +=.+..+.+..-++.|- ...
T Consensus 180 I~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~Geql~~kIkKIcd~f~a~~yp~p~~~~er 259 (829)
T KOG2189|consen 180 INREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQGEQLKQKIKKICDGFGATLYPCPESPEER 259 (829)
T ss_pred echhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEeecHHHHHHHHHHHhccCcEeecCCCChHHH
Confidence 4678889999999999998888888888887744332 12334445555556665 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 007823 161 EKAVIDLKKKVTASRALYCSHME 183 (588)
Q Consensus 161 ~~a~~~l~~~i~~~kd~~~s~le 183 (588)
.+...+++.+++.++........
T Consensus 260 ~~~~~~v~~ri~DL~~Vl~~t~~ 282 (829)
T KOG2189|consen 260 KEMLLEVNTRISDLQTVLDQTED 282 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 44566666666655444443333
No 115
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.46 E-value=8.9e+02 Score=26.95 Aligned_cols=33 Identities=6% Similarity=0.159 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHHHH
Q 007823 200 LEEISAFASSNSESIKEFLA------SEAREAASIYENL 232 (588)
Q Consensus 200 le~lss~~~~~~~~v~~f~~------sl~~e~~sv~~dl 232 (588)
-..+..+.+..+.+|..||. +++..+...++.+
T Consensus 359 ~~kl~~al~~np~~V~~lF~~~~~~~G~~~~l~~~l~~~ 397 (462)
T PRK08032 359 DDKLTKALKEDPAGVKALFVGDGKKTGITTQIATNLKSW 397 (462)
T ss_pred HHHHHHHHHHCHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 34577888888888888763 5666666666553
No 116
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=27.36 E-value=7.6e+02 Score=26.08 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 007823 116 VVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIH 160 (588)
Q Consensus 116 ~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~ 160 (588)
...-|..+| ..+..+...|......|...+..+......|....
T Consensus 241 ~e~lf~~eL-~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~ 284 (342)
T cd08915 241 FEDLFEEHL-KKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVK 284 (342)
T ss_pred hHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677788 44889999999999999999999999999986544
No 117
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.28 E-value=8.9e+02 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007823 63 EKDFIISEQKKAENALT 79 (588)
Q Consensus 63 Ee~~l~~~~~~tE~~L~ 79 (588)
|-.|.-+.-+..|++|.
T Consensus 348 E~q~~~kkrqnaekql~ 364 (575)
T KOG4403|consen 348 EVQYYNKKRQNAEKQLK 364 (575)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 44566666666777664
No 118
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.12 E-value=8.9e+02 Score=26.82 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHh--hhHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 007823 161 EKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFAS--SNSESIKEF---LASEAREAASIYENLQTT 235 (588)
Q Consensus 161 ~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~~--~~~~~v~~f---~~sl~~e~~sv~~dlq~~ 235 (588)
...+.+|+..+..++-+|.+....++....++..++....+ .+..+. ..-.-|+.- |..-....-+=++|||..
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~ 228 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDL 228 (424)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888888888888888877777754333 443333 222222222 333333344446777888
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007823 236 LSTQQGEMAI----FAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSL 282 (588)
Q Consensus 236 L~~Qk~~l~~----~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~~L 282 (588)
+...+.++.. -.-.+-+.....+..+..--..|..|+.++.-..++.
T Consensus 229 VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKi 279 (424)
T PF03915_consen 229 VEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKI 279 (424)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 8777777754 2222333444455555555556666776555554433
No 119
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=26.86 E-value=8e+02 Score=26.20 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 007823 119 NFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLG 158 (588)
Q Consensus 119 ~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~ 158 (588)
-|..+|.. +..+...|......|...+..+......|+.
T Consensus 255 lf~~eL~k-f~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~ 293 (353)
T cd09236 255 LFDKRLAK-YDKDLDAVSEEAQEQEEILQQIEVANKAFLQ 293 (353)
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667744 8899999999999999999999999999864
No 120
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.77 E-value=7.9e+02 Score=26.13 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007823 215 KEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQ 252 (588)
Q Consensus 215 ~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~ 252 (588)
+..+.+|+.--.+=++++++.|.+.+.++..+++++++
T Consensus 277 e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 277 EALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666677777777777777766666554
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.74 E-value=6.9e+02 Score=25.42 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENAL 78 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L 78 (588)
|...+++++.+..+-......+...+.+++.....+..+...+++.+.....-...+.+ ++.....+|.+|
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~---~r~r~~~~e~kl 82 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQE---IRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44555666666666555555555556666666666666666666655555555544444 455555555555
No 122
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.66 E-value=1.3e+03 Score=28.54 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=19.4
Q ss_pred HHhhhhhhhhhhhhhhhhhhhh-hHHHHHHHHHH
Q 007823 343 ENAVSSKLFLDGHASSVEGITT-DAKRKWQAFAM 375 (588)
Q Consensus 343 ~~~~~~~~~l~~~~ss~q~~~~-~~k~~~~~~~~ 375 (588)
..+......+...++.++..+. .+...|..-..
T Consensus 1004 ~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~ 1037 (1174)
T KOG0933|consen 1004 EIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNK 1037 (1174)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445556666777777665 45666776433
No 123
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.48 E-value=6.8e+02 Score=25.23 Aligned_cols=102 Identities=7% Similarity=0.027 Sum_probs=57.6
Q ss_pred HHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007823 87 GNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVID 166 (588)
Q Consensus 87 ~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~ 166 (588)
.....+..+++.+.+-....-........-.+.+..+-......+. .. ..+-..++.+..+++.++++..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~----~l-~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 14 SSAAAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYR----QL-EREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334556666666665555555555555555544333333332 22 334556666777788888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 167 LKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 167 l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
|..++...........--+....+.++
T Consensus 89 L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 89 LEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777665554444444444444333
No 124
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=26.43 E-value=1e+03 Score=27.27 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHHHhHHHHHHHHHHhhhhHHHHHH
Q 007823 458 EEVAKSSEDALQLIASASEQEQASIAEVLDDVKAHEKTINLFRESHSAQSASIKE 512 (588)
Q Consensus 458 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~l~~i~~ 512 (588)
.++++.+..+...|.+..-...+....|...+..-...+..+.+...+-+.+++.
T Consensus 313 selE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 313 SELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred ccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444454454444444444433
No 125
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=26.38 E-value=1.2e+03 Score=28.07 Aligned_cols=211 Identities=11% Similarity=0.112 Sum_probs=110.9
Q ss_pred HHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 007823 18 KYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNV 97 (588)
Q Consensus 18 ~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~ 97 (588)
.|...+.--..+++-++.-+...+++.+.|.++...+. .+++..|..+|.+...++...-..+...+.|-.
T Consensus 173 ~fvtnk~v~~~i~~s~~~m~~~~~dl~t~lrdv~~~l~---------~lli~dy~~~e~qv~~qLn~i~~~i~~~l~~~s 243 (865)
T KOG4331|consen 173 AFVTNKPVMLRIKNSLEDMRRLATDLRTYLRDVPRDLM---------VLLIADYTHSECQVFYQLNEIGMLIGGCLHDDS 243 (865)
T ss_pred HHHHhhHHHHhhhccHHHHHHHHHHHHHHHhccHHHHH---------HHHHHHhccchhHHHHHhhcccchhcchhhhcc
Confidence 34445555556666666667777777777766666554 358888999998888887765444433333333
Q ss_pred HHhHh--hhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007823 98 LLFQK--IGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASR 175 (588)
Q Consensus 98 gLh~K--l~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~k 175 (588)
+=+.= +++=.++- ... .++...++.|.+.+....+++++--..+.++... ++..+..-....+
T Consensus 244 ~s~vi~~l~~v~~~~-------~el-~~~~~ave~m~~~L~~~~s~~~~~~~~lr~~~~~-------sL~~llq~~~c~~ 308 (865)
T KOG4331|consen 244 ESNVIPVLDYVLSAA-------QEL-REMSEAVENMNDTLDSLGSQLNDGASKLRERVNA-------SLKVLLQVVLCQK 308 (865)
T ss_pred ccchHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHH-------HHHHHHHhHHhHH
Confidence 32221 33322222 111 1333445556666666666666666666655554 2333333333344
Q ss_pred HHHHhHHHHHHHHHHHH----HHHhhhhHHHHHHHHhhhHHHH-H---HHHHH----HHHHHHHHHHHHHHhHHHHHHHH
Q 007823 176 ALYCSHMEAVQNVVRLH----KACSNANLEEISAFASSNSESI-K---EFLAS----EAREAASIYENLQTTLSTQQGEM 243 (588)
Q Consensus 176 d~~~s~le~i~~l~~~~----k~~~~~~le~lss~~~~~~~~v-~---~f~~s----l~~e~~sv~~dlq~~L~~Qk~~l 243 (588)
.+|++.+.-+..++-+. .-.+.+.+.++...+.+-...+ . ..|.. ...+-..+..++.+.|..+.+.+
T Consensus 309 ~~ca~~~~~l~sl~~~~~~~qlp~vd~~~~gm~~V~~sei~~~~q~~~s~~n~l~~kvq~q~s~vv~~~~r~l~q~~~~l 388 (865)
T KOG4331|consen 309 KDCASAVKTLPSLRSTPFFDQLPNVDAFLSGMPNVVTSEILQSVQRGNSLFNVLPDKVQYQTSGVVDDVMRDLPQIPGDL 388 (865)
T ss_pred HhhHHHHHhhhhhccChhhhhCCCchHHHhccccchHHHHHHHHHhhhhhhhhhhHHHhhcccccchHHHHHHHhCCchH
Confidence 56666666666555443 1122333333433333322222 1 12222 23344456666677777777777
Q ss_pred HHHHHHHHH
Q 007823 244 AIFAREMRQ 252 (588)
Q Consensus 244 ~~~~~ql~~ 252 (588)
..+++-+..
T Consensus 389 ~~~a~~l~~ 397 (865)
T KOG4331|consen 389 DGLAEKLPS 397 (865)
T ss_pred HHHHhhccH
Confidence 666655544
No 126
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=26.20 E-value=7.1e+02 Score=25.39 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007823 14 ELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQ 71 (588)
Q Consensus 14 ~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~ 71 (588)
+||--.+....+...|+.++++.++.-.++.=...=.+..+.-....-.|+.+||..+
T Consensus 41 eLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l 98 (277)
T PF15030_consen 41 ELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL 98 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555444444444444444444444455555555443
No 127
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=25.76 E-value=5.2e+02 Score=23.69 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=40.4
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHhhhHhHHHHHHHHH
Q 007823 387 HSSAKHCRMELLLQECVNSGESAFGH-WKRTYESVNEMESKHVSSMISLTR 436 (588)
Q Consensus 387 ~~~~~~~~mE~~lq~~~~~~~~sv~~-~~~~~~ql~~l~~~q~~~ld~~v~ 436 (588)
++.+++-+||..+-.|.+.+..=+.+ |+.-+.+-..+.......+.+++.
T Consensus 3 ~l~~KrKr~e~~~k~s~k~~~~Kie~vwk~q~~~Rqkl~~~ys~q~~~l~~ 53 (130)
T PF04803_consen 3 ALQAKRKRLETFTKASLKSSNQKIEHVWKTQQEQRQKLNEEYSQQFSTLFQ 53 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999988887777766 999998888888777777777765
No 128
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.48 E-value=7.2e+02 Score=25.35 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHH------H----------------H---------HHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLN------N----------------T---------EEQ 53 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~------~----------------T---------e~~ 53 (588)
|+..++++.++...+..+.++...|+.+|.............-. - | ..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 45566777777777777777777777777665543222111000 0 0 000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhchhHHHhHhhhh
Q 007823 54 LKKCQYALKEKDFIISEQKKAENALT---HQACTLRGNLEKALQDNVLLFQKIGR 105 (588)
Q Consensus 54 L~~tk~~l~Ee~~l~~~~~~tE~~L~---~~A~~L~~~l~~s~~Dv~gLh~Kl~R 105 (588)
|- .--..++-.+..-...|+.|. .....|...++.--.|.-.||.||+=
T Consensus 81 Lp---IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 81 LP---IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011345556666666666654 44568889999999999999999864
No 129
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.79 E-value=6.2e+02 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007823 28 DLTTKLELTESNLDQTIKLLNNTEEQLKKCQYAL 61 (588)
Q Consensus 28 dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l 61 (588)
.|+.+|-+.+....-.+.+|..-+......|+.|
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445555555555555555555555555555444
No 130
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.74 E-value=6.9e+02 Score=24.73 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhchhHHHhHhhhhhHh
Q 007823 78 LTHQACTLRGNLEKALQDNVLLFQKIGREDK 108 (588)
Q Consensus 78 L~~~A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~ 108 (588)
|-..=..|...+..+...+..|-.++++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566677777777777777777665544
No 131
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=24.49 E-value=3.2e+02 Score=24.47 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHH
Q 007823 10 KQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLL 47 (588)
Q Consensus 10 k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L 47 (588)
.++++.+++|..+.+.-.-|.++|..|...|.+....|
T Consensus 29 ~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkL 66 (111)
T PF12001_consen 29 TELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKL 66 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35555555555555554445555554444444444433
No 132
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=24.46 E-value=1.1e+03 Score=26.82 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007823 3 VQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALK 62 (588)
Q Consensus 3 ~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~ 62 (588)
.+|..-++++.++++....-.....+.-++|+.|+...++.+..|+.....-..+....+
T Consensus 34 ~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e 93 (522)
T PF05701_consen 34 TELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSE 93 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345566666777766666666666677777777777777777777766655455444433
No 133
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.94 E-value=1.3e+03 Score=27.68 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007823 114 RSVVENFQVELAQQIGSLCDIVDLSTCQQ 142 (588)
Q Consensus 114 r~~~~~f~~~l~~~~~~l~~~v~~~~~qQ 142 (588)
|.....|= +--.+-.+-+.|-.|+.-|
T Consensus 139 R~~l~~~L--~~~~~~il~g~i~aF~~n~ 165 (806)
T PF05478_consen 139 RGCLGILL--LLLTLIILFGVICAFVANQ 165 (806)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 44444432 2333445556666666543
No 134
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.75 E-value=1.1e+03 Score=26.87 Aligned_cols=56 Identities=16% Similarity=-0.027 Sum_probs=30.1
Q ss_pred HHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007823 84 TLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLST 139 (588)
Q Consensus 84 ~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~ 139 (588)
.|+..=...-..|..|..+.+.-++--..|+.....+-..+...+..++.....|.
T Consensus 126 ~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~ 181 (560)
T PF06160_consen 126 ELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFE 181 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555555555555554
No 135
>PF15463 ECM11: Extracellular mutant protein 11
Probab=23.18 E-value=5.9e+02 Score=23.38 Aligned_cols=73 Identities=8% Similarity=-0.066 Sum_probs=52.0
Q ss_pred HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007823 107 DKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYC 179 (588)
Q Consensus 107 ~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~ 179 (588)
.-...-.-.=|...+..+.+.+..|-.++..-+..=......++..+...-.........+..++.++|..-.
T Consensus 64 ~~fs~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~G~ 136 (139)
T PF15463_consen 64 EFFSNLSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEGGK 136 (139)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555567888898888888888888888877777777777777776666655666666777766665433
No 136
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.67 E-value=1.4e+03 Score=27.55 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 12 LEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEK 91 (588)
Q Consensus 12 ~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~ 91 (588)
.-.....|-.-..+..|-+++++.-=..|...-..|+.-+..|..|...+.+. ++.+--.- +.+...+..|...|..
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d--~ke~etel-E~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDD--KKENEIEI-ENLNSRLHKLEDELSA 159 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HhhHHHHHHHHHHHhh
Confidence 33445555555545444445554444444444445555455555555544321 11111111 2345566666666666
Q ss_pred hhchhHHHhHhh
Q 007823 92 ALQDNVLLFQKI 103 (588)
Q Consensus 92 s~~Dv~gLh~Kl 103 (588)
-..||-..++-|
T Consensus 160 k~~eIf~~~~~L 171 (1265)
T KOG0976|consen 160 KAHDIFMIGEDL 171 (1265)
T ss_pred hhHHHHHHHHHH
Confidence 666665555443
No 137
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.61 E-value=1.2e+03 Score=26.70 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=38.1
Q ss_pred HHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 86 RGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCD---IVDLSTCQQNEHLKHVEKLCHSLL 157 (588)
Q Consensus 86 ~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~---~v~~~~~qQ~~~l~~~~~~~~sfv 157 (588)
-+.++.+-.++..+..-|+-=...+..||..+...+....+.=..|-. ........=.+.|..++..+..|.
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~ 185 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFV 185 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666667777777776665433332222211 122223344556666666666666
No 138
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.35 E-value=8.1e+02 Score=24.69 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 12 LEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLK 55 (588)
Q Consensus 12 ~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~ 55 (588)
++++++.|+..+.....|-++|+..+..+++-++.|...+..+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555544444433
No 139
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=21.83 E-value=7.5e+02 Score=26.32 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007823 7 THQKQLEELQDKYDCQVRQCSDLTTKLELTESN----LDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQA 82 (588)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~----L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A 82 (588)
.++--+-+|++.|..---. -.+|+.-+.+ .+-.++.|++.+..|....+..+|+.-=+++...+-..|...-
T Consensus 116 ~~Dskv~EveekykkaMvs----naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~ 191 (405)
T KOG2010|consen 116 LRDSKVSEVEEKYKKAMVS----NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKM 191 (405)
T ss_pred HhhhhhHHHHHHHHHHHHH----HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777654333 3333333333 3567889999999999999999888877777777777777766
Q ss_pred HHHHHHH
Q 007823 83 CTLRGNL 89 (588)
Q Consensus 83 ~~L~~~l 89 (588)
.+|...+
T Consensus 192 ~elKe~l 198 (405)
T KOG2010|consen 192 EELKEGL 198 (405)
T ss_pred HHHHHHH
Confidence 6665544
No 140
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.77 E-value=8.6e+02 Score=24.76 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=36.8
Q ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007823 193 KACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEM 243 (588)
Q Consensus 193 k~~~~~~le~lss~~~~~~~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk~~l 243 (588)
....+..|++++..+..++.++.+....+...+-..+.|....+.+.|.-+
T Consensus 105 E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vl 155 (243)
T cd07666 105 EEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVI 155 (243)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334778888888888888888866566666677777777777776666644
No 141
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.61 E-value=1.6e+03 Score=27.76 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007823 44 IKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTH 80 (588)
Q Consensus 44 ~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~ 80 (588)
.+.|+.+...+..-++...+..-.+..++.-+..|-.
T Consensus 663 ~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~ 699 (1072)
T KOG0979|consen 663 RKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN 699 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444433
No 142
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=21.33 E-value=8.7e+02 Score=24.63 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHH---HH-H-
Q 007823 143 NEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESI---KE-F- 217 (588)
Q Consensus 143 ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v---~~-f- 217 (588)
..+...|.+.+..+.+. +..-.++.....|..|-.+-.++..+...+.-.-......|..++....... .+ |
T Consensus 47 ~~F~k~Md~sv~~l~~~---~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l~~ 123 (237)
T PF10456_consen 47 KKFTKSMDDSVKQLSSV---ANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDLFA 123 (237)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443222 2222344445557777777777777776655443333344444444433332 22 1
Q ss_pred ---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007823 218 ---------LASEAREAASIYENLQTTLSTQQGEMAIFA 247 (588)
Q Consensus 218 ---------~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~ 247 (588)
+--.-.+.+.++...-..|+.||+.+..++
T Consensus 124 ~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~k 162 (237)
T PF10456_consen 124 EQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVK 162 (237)
T ss_dssp TSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCT
T ss_pred hccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHH
Confidence 222234456666666777788888777543
No 143
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=21.00 E-value=8.6e+02 Score=24.49 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=12.8
Q ss_pred HHhhhhHHHH---HHHHHHhhHHHHHHH
Q 007823 291 ENQMKSIADF---QKAYEDQTKSDTEKL 315 (588)
Q Consensus 291 ~~~~~~L~~~---~~~~e~~a~~e~~~L 315 (588)
.++.+.|.+| |.+|-++++.--..|
T Consensus 198 ~~~~~~L~~lv~AQl~Yh~q~~e~L~~l 225 (229)
T cd07594 198 ANHLRCLRDFVEAQMTYYAQCYQYMDDL 225 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 556666655444443
No 144
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.86 E-value=8.8e+02 Score=27.35 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=30.5
Q ss_pred hchhHHHhHh-hhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007823 93 LQDNVLLFQK-IGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKA 163 (588)
Q Consensus 93 ~~Dv~gLh~K-l~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a 163 (588)
+.+|.+.++. |+++-.-......-|.. ..+.+..|+..+.+--. ..+...+.+|.+++...
T Consensus 70 v~~i~r~~D~fl~~q~r~~~s~~~~~~~----~~~~l~~le~~f~~~~~------~gl~~~l~~ff~a~~~l 131 (507)
T PRK07739 70 AGSVERIRDQFLDIQYRRENNKLGYWET----KADALSQMEDIMNEPSD------TGLNKVLDQFWNSLQEL 131 (507)
T ss_pred eeEEEehHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHhCCCCc------chHHHHHHHHHHHHHHH
Confidence 5567777777 55554444443333333 33444444444433211 24566666666665543
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.77 E-value=1.3e+03 Score=26.49 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 007823 234 TTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQAD 290 (588)
Q Consensus 234 ~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~~L~~~~~~~~ 290 (588)
+.+..--+.+......+........+--+.+...+..+++.+...-..++.+++..-
T Consensus 510 ~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k 566 (581)
T KOG0995|consen 510 TSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLK 566 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666666666667777777788766666666655555433
No 146
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=20.54 E-value=9.1e+02 Score=24.59 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=4.5
Q ss_pred hhHHHhHhhh
Q 007823 95 DNVLLFQKIG 104 (588)
Q Consensus 95 Dv~gLh~Kl~ 104 (588)
+++.|++++.
T Consensus 131 ~l~~ll~~~~ 140 (291)
T TIGR00996 131 EIDDLLGSLT 140 (291)
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 147
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.22 E-value=8.9e+02 Score=24.32 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHhh
Q 007823 66 FIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQKI 103 (588)
Q Consensus 66 ~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~Kl 103 (588)
.|-.-+..-+..+......+-..++.-..++..|+..|
T Consensus 71 ~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i 108 (247)
T PF06705_consen 71 QINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEI 108 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666777777777777777777765
No 148
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=20.17 E-value=1.1e+03 Score=25.51 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHh
Q 007823 79 THQACTLRGNLEKALQDNVLLF 100 (588)
Q Consensus 79 ~~~A~~L~~~l~~s~~Dv~gLh 100 (588)
..+-..|...++.. +++.|.
T Consensus 233 ~~~ltrL~~~~~~~--~v~~l~ 252 (370)
T PLN03094 233 VGICTRLAREMEAI--GVAKMY 252 (370)
T ss_pred HHHHHHHHHHhhhc--chhHHH
Confidence 33444444444443 444443
Done!