Query 007823
Match_columns 588
No_of_seqs 120 out of 171
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s84_A Apolipoprotein A-IV; fo 96.0 1.5 5.1E-05 43.9 27.1 34 337-373 239-272 (273)
2 3s84_A Apolipoprotein A-IV; fo 92.2 10 0.00035 37.8 28.2 10 95-104 23-32 (273)
3 2a01_A Apolipoprotein A-I; fou 90.9 9.5 0.00033 37.2 17.0 29 233-261 109-137 (243)
4 3o0z_A RHO-associated protein 88.9 14 0.00048 34.0 22.0 112 5-119 8-126 (168)
5 3r2p_A Apolipoprotein A-I; amp 86.0 22 0.00074 33.1 15.6 102 147-262 10-117 (185)
6 2a01_A Apolipoprotein A-I; fou 86.0 5.3 0.00018 39.1 11.3 19 196-214 97-115 (243)
7 3zx6_A HAMP, methyl-accepting 85.2 35 0.0012 34.7 34.2 19 316-335 148-166 (341)
8 3ghg_A Fibrinogen alpha chain; 84.3 14 0.00046 39.9 13.9 74 96-173 87-160 (562)
9 3ol1_A Vimentin; structural ge 78.4 13 0.00045 32.2 9.6 68 2-72 40-107 (119)
10 2v71_A Nuclear distribution pr 76.9 49 0.0017 31.0 14.7 99 25-129 43-144 (189)
11 1gs9_A Apolipoprotein E, APOE4 76.8 18 0.00063 33.1 10.7 17 145-161 25-41 (165)
12 1c1g_A Tropomyosin; contractIl 76.8 50 0.0017 31.0 43.0 41 9-49 5-45 (284)
13 1i84_S Smooth muscle myosin he 73.5 3.7 0.00013 49.4 6.4 44 5-48 859-902 (1184)
14 3r2p_A Apolipoprotein A-I; amp 72.4 25 0.00084 32.7 10.6 28 235-262 134-161 (185)
15 2lem_A Apolipoprotein A-I; lip 71.5 18 0.00061 34.6 9.6 25 190-214 90-114 (216)
16 2lem_A Apolipoprotein A-I; lip 69.8 77 0.0026 30.1 14.0 45 218-262 71-115 (216)
17 1nfn_A Apolipoprotein E3; lipi 69.1 60 0.0021 30.3 12.5 22 235-256 129-150 (191)
18 1nfn_A Apolipoprotein E3; lipi 68.9 69 0.0024 29.9 12.9 25 79-103 27-51 (191)
19 1c1g_A Tropomyosin; contractIl 67.2 82 0.0028 29.4 43.4 41 15-55 4-44 (284)
20 3swk_A Vimentin; cytoskeleton, 64.4 14 0.00047 30.2 6.0 56 2-57 20-75 (86)
21 2l7b_A Apolipoprotein E, APO-E 61.8 26 0.00089 35.4 8.9 46 217-262 97-142 (307)
22 1deq_A Fibrinogen (alpha chain 57.3 1.8E+02 0.0061 30.1 14.0 44 96-139 90-133 (390)
23 3na7_A HP0958; flagellar bioge 56.5 1.5E+02 0.005 28.7 22.5 22 201-222 164-185 (256)
24 4h22_A Leucine-rich repeat fli 56.3 21 0.00073 30.0 5.8 57 12-68 32-88 (103)
25 3ghg_A Fibrinogen alpha chain; 55.2 1.9E+02 0.0066 31.1 14.3 99 82-198 48-146 (562)
26 2ch7_A Methyl-accepting chemot 51.2 1.8E+02 0.0062 28.3 37.5 9 327-335 136-144 (309)
27 1eq1_A Apolp-III, apolipophori 51.0 30 0.001 30.5 6.1 50 108-157 11-65 (166)
28 3r6n_A Desmoplakin; spectrin r 51.0 2.5E+02 0.0085 29.7 22.7 39 503-541 254-294 (450)
29 1ic2_A Tropomyosin alpha chain 50.9 62 0.0021 25.7 7.8 17 34-50 51-67 (81)
30 1deq_A Fibrinogen (alpha chain 50.4 1.9E+02 0.0063 30.0 12.8 35 159-193 110-144 (390)
31 3zcc_A HAMP, osmolarity sensor 50.1 83 0.0028 24.9 8.8 31 221-251 42-72 (114)
32 3hnw_A Uncharacterized protein 49.0 91 0.0031 27.6 9.2 31 25-55 90-120 (138)
33 3oja_B Anopheles plasmodium-re 48.2 2.5E+02 0.0084 30.2 14.8 24 8-31 461-484 (597)
34 3qh9_A Liprin-beta-2; coiled-c 47.6 1.1E+02 0.0037 24.6 8.8 75 7-106 6-80 (81)
35 3zrx_A AF1503 protein, osmolar 46.5 1E+02 0.0035 24.2 8.8 31 221-251 42-72 (115)
36 4h22_A Leucine-rich repeat fli 42.8 1.5E+02 0.0051 24.9 10.2 55 35-89 27-81 (103)
37 1gs9_A Apolipoprotein E, APOE4 42.8 1.2E+02 0.0041 27.6 9.3 15 117-131 26-40 (165)
38 2l7b_A Apolipoprotein E, APO-E 42.4 89 0.003 31.5 9.1 24 80-103 36-59 (307)
39 2xs1_A Programmed cell death 6 42.2 4E+02 0.014 29.7 25.3 41 119-159 605-645 (704)
40 3htk_A Structural maintenance 42.1 1E+02 0.0035 22.7 8.6 48 11-58 6-53 (60)
41 1p68_A De novo designed protei 34.9 82 0.0028 24.9 5.7 76 180-255 7-94 (102)
42 2v66_B Nuclear distribution pr 33.5 2.2E+02 0.0076 24.2 10.1 14 10-23 17-30 (111)
43 2dfs_A Myosin-5A; myosin-V, in 31.8 7E+02 0.024 29.4 17.2 24 151-174 1019-1042(1080)
44 3c98_B Syntaxin-1A; protein co 31.8 2.9E+02 0.0099 26.0 10.9 16 87-102 57-72 (279)
45 3oja_B Anopheles plasmodium-re 31.7 1.9E+02 0.0064 31.2 10.4 6 183-188 572-577 (597)
46 1m1j_A Fibrinogen alpha subuni 31.2 5E+02 0.017 27.5 14.7 105 67-175 52-163 (491)
47 2dfs_A Myosin-5A; myosin-V, in 28.6 7.9E+02 0.027 29.0 17.7 11 11-21 929-939 (1080)
48 3u1c_A Tropomyosin alpha-1 cha 27.6 2.6E+02 0.0089 23.1 12.2 11 11-21 17-27 (101)
49 1m1j_C Fibrinogen gamma chain; 26.2 5.7E+02 0.02 26.6 14.8 12 225-236 103-114 (409)
50 2nrj_A HBL B protein; enteroto 25.9 5.3E+02 0.018 26.1 16.1 31 503-534 316-346 (346)
51 3zcc_A HAMP, osmolarity sensor 25.0 2.4E+02 0.0083 21.9 9.6 6 130-135 48-53 (114)
52 3ghg_B Fibrinogen beta chain; 24.8 6.4E+02 0.022 26.7 14.1 21 160-180 107-127 (461)
53 3vkg_A Dynein heavy chain, cyt 23.4 1.5E+03 0.05 30.4 28.9 20 301-320 2317-2336(3245)
54 3vkg_A Dynein heavy chain, cyt 22.8 1.5E+03 0.051 30.3 30.4 73 121-193 1861-1937(3245)
55 3ghg_C Fibrinogen gamma chain; 22.7 5E+02 0.017 27.1 11.0 105 135-240 25-132 (411)
56 3htk_A Structural maintenance 22.7 2.3E+02 0.0078 20.7 7.8 41 8-48 10-50 (60)
57 1f5n_A Interferon-induced guan 22.5 7.8E+02 0.027 26.8 27.0 32 306-337 533-564 (592)
58 2jqq_A Conserved oligomeric go 20.6 2.5E+02 0.0085 26.2 7.2 109 239-356 52-161 (204)
59 3na7_A HP0958; flagellar bioge 20.1 5.7E+02 0.02 24.4 18.8 73 5-80 13-85 (256)
60 3zx6_A HAMP, methyl-accepting 20.0 6.5E+02 0.022 25.0 37.5 32 293-325 179-210 (341)
No 1
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=95.99 E-value=1.5 Score=43.92 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q 007823 337 RLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAF 373 (588)
Q Consensus 337 ~~~~l~~~~~~~~~~l~~~~ss~q~~~~~~k~~~~~~ 373 (588)
.+..||.........++.+ +.-+.++++++.++|
T Consensus 239 ~~e~l~~~l~~~~~~~~~~---~~~~~~d~~~~~~~~ 272 (273)
T 3s84_A 239 QMEQLRQKLGPHAGDVEGH---LSFLEKDLRDKVNSF 272 (273)
T ss_dssp HHHHHHHHHSCC-------------------------
T ss_pred HHHHHHHHhCcchhhHHhh---hhHHHHHHHHHhhcc
Confidence 3445555544333333333 333444555555544
No 2
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=92.20 E-value=10 Score=37.80 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=4.1
Q ss_pred hhHHHhHhhh
Q 007823 95 DNVLLFQKIG 104 (588)
Q Consensus 95 Dv~gLh~Kl~ 104 (588)
|+..|+.||.
T Consensus 23 ~~eel~~~L~ 32 (273)
T 3s84_A 23 ELEELRARLL 32 (273)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHhcC
Confidence 3444444443
No 3
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=90.88 E-value=9.5 Score=37.23 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 233 QTTLSTQQGEMAIFAREMRQRFQVTIERT 261 (588)
Q Consensus 233 q~~L~~Qk~~l~~~~~ql~~~~~~~~~~~ 261 (588)
.+++.+-+..|.-+..+++..+...++..
T Consensus 109 ~~~~eelr~~L~P~~eel~~~~~~~~eel 137 (243)
T 2a01_A 109 QEEMELYRQKVEPLRAELQEGARQKLHEL 137 (243)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444444444455544444444333
No 4
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.87 E-value=14 Score=33.97 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLEL---TESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQ 81 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~---t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~ 81 (588)
+-..+||+++++++|.....--..++|..-. +...++.....|.+.=..|...+..|..+-+-+.+....|..-..+
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q 87 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH 87 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999998888888875544 4566777777777888888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhHHHhHhhhhhH----hhhHhhHHHHHH
Q 007823 82 ACTLRGNLEKALQDNVLLFQKIGRED----KLNADNRSVVEN 119 (588)
Q Consensus 82 A~~L~~~l~~s~~Dv~gLh~Kl~Rk~----~le~~Nr~~~~~ 119 (588)
+..++..++. -|.+|+..|+|-. ++...|+.+.+.
T Consensus 88 ~se~~~elq~---ri~~L~~El~~~k~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 88 DSEMIGDLQA---RITSLQEEVKHLKHNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 6788888887654 455556555444
No 5
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=86.05 E-value=22 Score=33.05 Aligned_cols=102 Identities=11% Similarity=0.209 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HH----HHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHH
Q 007823 147 KHVEKLCHSLLGIHEKAVIDLKKKVTASR--AL----YCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLAS 220 (588)
Q Consensus 147 ~~~~~~~~sfv~~~~~a~~~l~~~i~~~k--d~----~~s~le~i~~l~~~~k~~~~~~le~lss~~~~~~~~v~~f~~s 220 (588)
..+...|..||+.......+.-.++.++. .. +...++.+..-...++..++-.. .+|...
T Consensus 10 e~v~~~~w~Y~~~l~~~a~~~ve~l~~seL~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~--------------~e~~~~ 75 (185)
T 3r2p_A 10 DRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVT--------------QEFWDN 75 (185)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHSHHHHHTTCCCCTTCSCSSCHHHHHHHHHCSCC--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--------------HHHHHH
Confidence 44556666777666665555555554432 11 11122222222233332222222 223334
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 221 EAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 262 (588)
Q Consensus 221 l~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~ 262 (588)
+..+...+-..|.+++.+-+..+.-+..+++......++..+
T Consensus 76 l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr 117 (185)
T 3r2p_A 76 LEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYR 117 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444444455555666666666666666666666655555444
No 6
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=85.98 E-value=5.3 Score=39.07 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHhhhHHHH
Q 007823 196 SNANLEEISAFASSNSESI 214 (588)
Q Consensus 196 ~~~~le~lss~~~~~~~~v 214 (588)
+.--.+++...+..+..++
T Consensus 97 l~Py~~el~~~~~~~~eel 115 (243)
T 2a01_A 97 VQPYLDDFQKKWQEEMELY 115 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3334444444444444444
No 7
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=85.23 E-value=35 Score=34.72 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007823 316 IADVTSLVSSHMRRQTELVE 335 (588)
Q Consensus 316 l~~I~~Ll~~~~~~q~~~l~ 335 (588)
|..|..+|.. ++.|++||+
T Consensus 148 I~~i~~~I~~-IA~QTNLLA 166 (341)
T 3zx6_A 148 IADIISVIDG-IAFQTNILA 166 (341)
T ss_dssp HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHH
Confidence 4445554544 788999976
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.34 E-value=14 Score=39.87 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=47.8
Q ss_pred hHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007823 96 NVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTA 173 (588)
Q Consensus 96 v~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~ 173 (588)
+..+++.|..+-.....|.++...+..+|...+..|...|..-+ ..|+.|+..+.+-+..-.+...++..+|..
T Consensus 87 ~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl----snIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV----QHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777778888888888888888888888887765 344555554544444444444444444433
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.39 E-value=13 Score=32.20 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=46.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007823 2 GVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQK 72 (588)
Q Consensus 2 e~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~ 72 (588)
+.+|...+-.+++|+..|+.+.........++...++.++++.=.-.+++..+...+ +|=.|+.+.|.
T Consensus 40 ~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~---eEl~FLKk~he 107 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ---EEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345667777888888999988888888888888888887766544444444443333 34467777775
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.89 E-value=49 Score=30.99 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=50.9
Q ss_pred HhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHhHh--
Q 007823 25 QCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEKALQDNVLLFQK-- 102 (588)
Q Consensus 25 ~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~s~~Dv~gLh~K-- 102 (588)
+=..|.++|+.+.+.+...+..+..+...+...|..+.. ....+..+-..|-.....|....+.-...|-.|=.+
T Consensus 43 LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 43 LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555666666666666666666665555554432 344444455666666666665555555544444444
Q ss_pred -hhhhHhhhHhhHHHHHHHHHHHHHHHH
Q 007823 103 -IGREDKLNADNRSVVENFQVELAQQIG 129 (588)
Q Consensus 103 -l~Rk~~le~~Nr~~~~~f~~~l~~~~~ 129 (588)
|+|+..+- .....-|...++..++
T Consensus 120 dlEr~~R~~---~~SleD~e~kln~aiE 144 (189)
T 2v71_A 120 DLERAKRAT---IMSLEDFEQRLNQAIE 144 (189)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHH
Confidence 44443332 2333444445555544
No 11
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=76.84 E-value=18 Score=33.14 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhHH
Q 007823 145 HLKHVEKLCHSLLGIHE 161 (588)
Q Consensus 145 ~l~~~~~~~~sfv~~~~ 161 (588)
.+..+...|-.|++.-.
T Consensus 25 ~le~v~~~~w~Y~~q~~ 41 (165)
T 1gs9_A 25 RWELALGRFWDYLRWVQ 41 (165)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555654443
No 12
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=76.81 E-value=50 Score=30.97 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHH
Q 007823 9 QKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNN 49 (588)
Q Consensus 9 ~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~ 49 (588)
.|.+..+...|+.-......+..++...+..+......+..
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 45 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVS 45 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333333333333333333333
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.47 E-value=3.7 Score=49.37 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLN 48 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~ 48 (588)
++..++++.+++...........++..++...+..+...+..|.
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444444444444444444433333
No 14
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=72.35 E-value=25 Score=32.67 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 235 TLSTQQGEMAIFAREMRQRFQVTIERTK 262 (588)
Q Consensus 235 ~L~~Qk~~l~~~~~ql~~~~~~~~~~~~ 262 (588)
++.+.+..|.-+...++..+...++..+
T Consensus 134 ~~e~Lr~~L~p~~e~lr~~l~~~~e~lk 161 (185)
T 3r2p_A 134 KLHELQEKLSPLGEEMRDRARAHVDALR 161 (185)
T ss_dssp HHTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445544444444443
No 15
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=71.47 E-value=18 Score=34.58 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=11.7
Q ss_pred HHHHHHhhhhHHHHHHHHhhhHHHH
Q 007823 190 RLHKACSNANLEEISAFASSNSESI 214 (588)
Q Consensus 190 ~~~k~~~~~~le~lss~~~~~~~~v 214 (588)
+.++.++....+++..-+..+...+
T Consensus 90 ee~r~~l~py~~el~~~~~~~~e~l 114 (216)
T 2lem_A 90 EEVKQKVQPYLDEFQKKWKEDVELY 114 (216)
T ss_dssp HHHHHHTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHH
Confidence 3444444444445544444444444
No 16
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=69.83 E-value=77 Score=30.06 Aligned_cols=45 Identities=9% Similarity=0.254 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 218 LASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 262 (588)
Q Consensus 218 ~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~ 262 (588)
...+..+...+-..|.+.+.+-+..+.-.+.+++..+...++..+
T Consensus 71 ~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr 115 (216)
T 2lem_A 71 WDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYR 115 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHH
Confidence 334444444455555666666666666555566655555554444
No 17
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=69.11 E-value=60 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007823 235 TLSTQQGEMAIFAREMRQRFQV 256 (588)
Q Consensus 235 ~L~~Qk~~l~~~~~ql~~~~~~ 256 (588)
++.+-+..|.=+..+++..+..
T Consensus 129 ~~Eelr~~L~Py~eelr~kl~~ 150 (191)
T 1nfn_A 129 STEELRVRLASHLRKLRKRLLR 150 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 3334444443333344433333
No 18
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=68.94 E-value=69 Score=29.88 Aligned_cols=25 Identities=4% Similarity=-0.114 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhchhHHHhHhh
Q 007823 79 THQACTLRGNLEKALQDNVLLFQKI 103 (588)
Q Consensus 79 ~~~A~~L~~~l~~s~~Dv~gLh~Kl 103 (588)
-.+...+-..++........+...|
T Consensus 27 e~v~~~~~~y~~~l~~~a~~~~eqL 51 (191)
T 1nfn_A 27 ELALGRFWDYLRWVQTLSEQVQEEL 51 (191)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555
No 19
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.24 E-value=82 Score=29.39 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 15 LQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLK 55 (588)
Q Consensus 15 ~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~ 55 (588)
|+..|..-...+..+..+++.....+......+...+..+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.40 E-value=14 Score=30.22 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=42.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007823 2 GVQLETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKC 57 (588)
Q Consensus 2 e~~le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~t 57 (588)
+.++....-.+++|+..|+.+.........+.-..++.++.+.=.=.+++..+...
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999999988888888888887765555555444443
No 21
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=61.76 E-value=26 Score=35.43 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 217 FLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 262 (588)
Q Consensus 217 f~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~~~~~~~~~~~ 262 (588)
|...+..+...+-..|.+.+.+-+..|.-.+.+++..+...++..+
T Consensus 97 ~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr 142 (307)
T 2l7b_A 97 TRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELR 142 (307)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666666555554444333
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.32 E-value=1.8e+02 Score=30.06 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=26.2
Q ss_pred hHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007823 96 NVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLST 139 (588)
Q Consensus 96 v~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~ 139 (588)
|.-+.+.+.-+-+....|-.++..|...|..+...|..+|..-+
T Consensus 90 ~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 90 TKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555666666777777777666666666665543
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.51 E-value=1.5e+02 Score=28.75 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=10.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 007823 201 EEISAFASSNSESIKEFLASEA 222 (588)
Q Consensus 201 e~lss~~~~~~~~v~~f~~sl~ 222 (588)
......+..+...+-.+|..+.
T Consensus 164 ~~r~~l~~~i~~~lL~~Yerir 185 (256)
T 3na7_A 164 KKKEDLVEKTEPKIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444555544455443
No 24
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.28 E-value=21 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007823 12 LEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFII 68 (588)
Q Consensus 12 ~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~ 68 (588)
++=|....+.....+..++.++......++..+.....+...+...+..|++++-||
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444443
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.15 E-value=1.9e+02 Score=31.13 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Q 007823 82 ACTLRGNLEKALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHE 161 (588)
Q Consensus 82 A~~L~~~l~~s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~ 161 (588)
+|.|..++.+.=.|+...-.||.. .|+...++-...|+. +....+.|..+ |.+.. ..-+.+.
T Consensus 48 GCrLQglLdkqErDltkrINELKn--qLEdlsKnsKdseqy-~k~~~E~Lr~r-------q~q~~--------dNdNtyn 109 (562)
T 3ghg_A 48 GCRMKGLIDEVNQDFTNRINKLKN--SLFEYQKNNKDSHSL-TTNIMEILRGD-------FSSAN--------NRDNTYN 109 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHTHHHHHHHHHHHH-HHHHHHTTSSH-------HHHHH--------HHHHHHH
T ss_pred ccchhhhHHhhcCcHHHHHHHHHH--HHHHHHhhchhHHHH-HHHHHHHHHHH-------HHhhh--------ccchhHH
Confidence 688888888888888888888763 344443333333321 12222222222 22211 1223445
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 007823 162 KAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNA 198 (588)
Q Consensus 162 ~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~ 198 (588)
+...+|+.+|.-+|...++.+.-|+.|+..|...+..
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566899999999999999998888888877755443
No 26
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=51.25 E-value=1.8e+02 Score=28.27 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 007823 327 MRRQTELVE 335 (588)
Q Consensus 327 ~~~q~~~l~ 335 (588)
+..|.++|+
T Consensus 136 Ia~qtnllA 144 (309)
T 2ch7_A 136 IAEQTNLLA 144 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334555444
No 27
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=50.98 E-value=30 Score=30.48 Aligned_cols=50 Identities=4% Similarity=0.121 Sum_probs=29.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 108 KLNADNRSVVENFQVELAQQIG-----SLCDIVDLSTCQQNEHLKHVEKLCHSLL 157 (588)
Q Consensus 108 ~le~~Nr~~~~~f~~~l~~~~~-----~l~~~v~~~~~qQ~~~l~~~~~~~~sfv 157 (588)
+++.|-..-.-.|..+++.... .+...+..+..---++|..+++.+++-+
T Consensus 11 DiEKHAaEfqKTfSeQfNsl~nSKntQ~~nKA~KdGsDsvLqqls~~s~slq~al 65 (166)
T 1eq1_A 11 EMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAI 65 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554432 4556666666666667777777776665
No 28
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=50.97 E-value=2.5e+02 Score=29.74 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhhc--ccCCCCCCcccccccCC
Q 007823 503 HSAQSASIKEKAQETFQQRYMD--YEHTGTTPTRCESEVPS 541 (588)
Q Consensus 503 ~~~~l~~i~~~~~~~l~~~l~~--d~PTGtTP~Kr~~~yPs 541 (588)
....+..|...+..++.-...- +-|+|..|-+--|+|-.
T Consensus 254 ~~~~I~~L~~qA~~l~~l~~r~~~~~~~~~~~V~alcdy~~ 294 (450)
T 3r6n_A 254 YKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQ 294 (450)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGSTTCCCSSCCEEEESSCEEE
T ss_pred HHHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccccC
Confidence 3445555666777665433332 34677777777777753
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.86 E-value=62 Score=25.75 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=6.0
Q ss_pred HHHHHhHHHHHHHHHHH
Q 007823 34 ELTESNLDQTIKLLNNT 50 (588)
Q Consensus 34 e~t~~~L~~T~~~L~~T 50 (588)
..++.+|+.+...|..+
T Consensus 51 q~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 51 KGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.40 E-value=1.9e+02 Score=29.95 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 159 IHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 159 ~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
...+-..+|+.+|.-+|.-.+..+..|+.|+..|+
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~ 144 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVR 144 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444555666666555555555555555554444
No 31
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=50.09 E-value=83 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 221 EAREAASIYENLQTTLSTQQGEMAIFAREMR 251 (588)
Q Consensus 221 l~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~ 251 (588)
++..+..+.+.+...+...+.-+..+..+++
T Consensus 42 l~~~~n~m~~~l~~~~~~~~~~~~~~shel~ 72 (114)
T 3zcc_A 42 LAKSIERLRRSLKQLADDGTLLMAGVSHDLR 72 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHc
Confidence 4444444444444444444444444444444
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.96 E-value=91 Score=27.57 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=12.0
Q ss_pred HhHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 25 QCSDLTTKLELTESNLDQTIKLLNNTEEQLK 55 (588)
Q Consensus 25 ~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~ 55 (588)
...+||.+|..++..++..+..+.+++..+.
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333333333333
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.19 E-value=2.5e+02 Score=30.21 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhH
Q 007823 8 HQKQLEELQDKYDCQVRQCSDLTT 31 (588)
Q Consensus 8 ~~k~~~~~~~~~~~~~~~~~dlk~ 31 (588)
.+.++..+++......+....+..
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~ 484 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHA 484 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333333
No 34
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.62 E-value=1.1e+02 Score=24.58 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 7 THQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLR 86 (588)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~ 86 (588)
++++.-.++-+.|.. -.+|-.++...+-.+.+..+.=.+.+..|+.||..| ..|.
T Consensus 6 ~~Ekd~~~~ee~~~~----~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El---------------------~~Lq 60 (81)
T 3qh9_A 6 GMEKEQREQEEKQRK----AEELLQELRHLKIKVEELENERNQYEWKLKATKAEV---------------------AQLQ 60 (81)
T ss_dssp --------CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
T ss_pred HHhhhhhhhHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---------------------HHHH
Confidence 344444444444433 346677777888888888888888888888888332 2333
Q ss_pred HHHHHhhchhHHHhHhhhhh
Q 007823 87 GNLEKALQDNVLLFQKIGRE 106 (588)
Q Consensus 87 ~~l~~s~~Dv~gLh~Kl~Rk 106 (588)
.-|..-=.++..||++|-|+
T Consensus 61 ~qLe~kd~ei~rL~~~l~~~ 80 (81)
T 3qh9_A 61 EQVALKDAEIERLHSQLSRT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhhHHHHHHHHHHHhhc
Confidence 44444445677777776543
No 35
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=46.45 E-value=1e+02 Score=24.20 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 221 EAREAASIYENLQTTLSTQQGEMAIFAREMR 251 (588)
Q Consensus 221 l~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~ 251 (588)
++..+..+.+.+...+...+..+..+..+++
T Consensus 42 l~~~~n~m~~~l~~~~~~~~~~~~~~shel~ 72 (115)
T 3zrx_A 42 LAKSIERLRRSLKQLADDRTLLMAGVSHDLR 72 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333333333
No 36
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.83 E-value=1.5e+02 Score=24.88 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=38.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 35 LTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNL 89 (588)
Q Consensus 35 ~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l 89 (588)
...=..+-.++.|++.++.+...++.+.|+.--+..+..+-..|...-..|...+
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456678888889999999999998887777666666666666555555444
No 37
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=42.81 E-value=1.2e+02 Score=27.58 Aligned_cols=15 Identities=7% Similarity=-0.239 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 007823 117 VENFQVELAQQIGSL 131 (588)
Q Consensus 117 ~~~f~~~l~~~~~~l 131 (588)
|...++.|.+-+..+
T Consensus 26 le~v~~~~w~Y~~q~ 40 (165)
T 1gs9_A 26 WELALGRFWDYLRWV 40 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444433
No 38
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=42.40 E-value=89 Score=31.48 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhchhHHHhHhh
Q 007823 80 HQACTLRGNLEKALQDNVLLFQKI 103 (588)
Q Consensus 80 ~~A~~L~~~l~~s~~Dv~gLh~Kl 103 (588)
.+...+-..++........+...|
T Consensus 36 ~v~~~fwdY~~~~~~~a~~~~eql 59 (307)
T 2l7b_A 36 LALGRFWDYLRWVQTLSEQVQEEL 59 (307)
T ss_dssp HHHHHHHHHHHHTCCCSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 39
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=42.21 E-value=4e+02 Score=29.70 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 007823 119 NFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGI 159 (588)
Q Consensus 119 ~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~ 159 (588)
-|..+|...++.+...|......|...+..+......|...
T Consensus 605 lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~ 645 (704)
T 2xs1_A 605 LSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 645 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888899999999999999999999999999999754
No 40
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.10 E-value=1e+02 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007823 11 QLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQ 58 (588)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk 58 (588)
++..+++.++.....+..++..++.++..|......|.........-+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665555566666666666666666666666555555444
No 41
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=34.92 E-value=82 Score=24.86 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhhHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007823 180 SHMEAVQNVVRLHKACSNA---NLEEISAFASSNSESIKEF---------LASEAREAASIYENLQTTLSTQQGEMAIFA 247 (588)
Q Consensus 180 s~le~i~~l~~~~k~~~~~---~le~lss~~~~~~~~v~~f---------~~sl~~e~~sv~~dlq~~L~~Qk~~l~~~~ 247 (588)
..++.++.+...+....-. .+-++....+....+|-+| +.-+..+|..++++|-.+|.--+..+..+.
T Consensus 7 dlledlqevlknlhknwhggkdnlhdvdnhlqnviedihdfmqgggsggklqemmkefqqvldelnnhlqggkhtvhhie 86 (102)
T 1p68_A 7 DLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKHTVHHIE 86 (102)
T ss_dssp HHHHHHHHHHHHHHTTSSSCSTTTHHHHHHHHHHHHHHHTTTTTSSTTTHHHHTHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCccchhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhccCchhHHHHH
Confidence 3445555544444433322 2334444444445555555 778889999999999999977777776666
Q ss_pred HHHHHHHH
Q 007823 248 REMRQRFQ 255 (588)
Q Consensus 248 ~ql~~~~~ 255 (588)
+.+.+.|.
T Consensus 87 qnikeifh 94 (102)
T 1p68_A 87 QNIKEIFH 94 (102)
T ss_dssp HHHTTHHH
T ss_pred HhHHHHHH
Confidence 66555543
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.53 E-value=2.2e+02 Score=24.17 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 007823 10 KQLEELQDKYDCQV 23 (588)
Q Consensus 10 k~~~~~~~~~~~~~ 23 (588)
-+++.++..|...+
T Consensus 17 ~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 17 YEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555543
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.84 E-value=7e+02 Score=29.42 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=10.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Q 007823 151 KLCHSLLGIHEKAVIDLKKKVTAS 174 (588)
Q Consensus 151 ~~~~sfv~~~~~a~~~l~~~i~~~ 174 (588)
++++.-++...+....|+.++..+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455444433
No 44
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=31.83 E-value=2.9e+02 Score=25.98 Aligned_cols=16 Identities=0% Similarity=0.050 Sum_probs=7.7
Q ss_pred HHHHHhhchhHHHhHh
Q 007823 87 GNLEKALQDNVLLFQK 102 (588)
Q Consensus 87 ~~l~~s~~Dv~gLh~K 102 (588)
..+...+.++..+|.+
T Consensus 57 ~~i~~~v~el~~~~~~ 72 (279)
T 3c98_B 57 DKIAENVEEVKRKHSA 72 (279)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455555554
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.66 E-value=1.9e+02 Score=31.17 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007823 183 EAVQNV 188 (588)
Q Consensus 183 e~i~~l 188 (588)
.+++.+
T Consensus 572 ~~~~~l 577 (597)
T 3oja_B 572 QKVKQL 577 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 46
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.23 E-value=5e+02 Score=27.50 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------hchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007823 67 IISEQKKAENALTHQACTLRGNLEKA-------LQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLST 139 (588)
Q Consensus 67 l~~~~~~tE~~L~~~A~~L~~~l~~s-------~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~ 139 (588)
|...+.++|.-+...-..|.+.|..- -..+..+.+.+.-+-+....|-+++..+...|.....-|..+|..-+
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007823 140 CQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASR 175 (588)
Q Consensus 140 ~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~k 175 (588)
+.|..|..-+.+-+..-.+...++..++...+
T Consensus 132 ----~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr 163 (491)
T 1m1j_A 132 ----NRIKALQNSIQEQVVEMKRLEVDIDIKIRACK 163 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.60 E-value=7.9e+02 Score=28.98 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 007823 11 QLEELQDKYDC 21 (588)
Q Consensus 11 ~~~~~~~~~~~ 21 (588)
++.+|+...+.
T Consensus 929 kl~eLq~rL~~ 939 (1080)
T 2dfs_A 929 KIMQLQRKIDE 939 (1080)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.60 E-value=2.6e+02 Score=23.08 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 007823 11 QLEELQDKYDC 21 (588)
Q Consensus 11 ~~~~~~~~~~~ 21 (588)
+.+...+.++.
T Consensus 17 e~e~a~drae~ 27 (101)
T 3u1c_A 17 DKENALDRAEQ 27 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 49
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.19 E-value=5.7e+02 Score=26.60 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhH
Q 007823 225 AASIYENLQTTL 236 (588)
Q Consensus 225 ~~sv~~dlq~~L 236 (588)
....+..|+..|
T Consensus 103 ~~~~i~~l~~~~ 114 (409)
T 1m1j_C 103 HENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 50
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=25.88 E-value=5.3e+02 Score=26.07 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 007823 503 HSAQSASIKEKAQETFQQRYMDYEHTGTTPTR 534 (588)
Q Consensus 503 ~~~~l~~i~~~~~~~l~~~l~~d~PTGtTP~K 534 (588)
...+...|...+.++ .++++...|+--||+|
T Consensus 316 a~~~W~~l~~~a~~l-~~~~~~~~~~~~~~~~ 346 (346)
T 2nrj_A 316 AKDSWKTLRTDAVTL-KEGIKELKVETVTPQK 346 (346)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTCCEEC-----
T ss_pred HHhHHHHHHHHHHHH-HHhhhhhccccCCCCC
Confidence 344556666677776 4567767777778876
No 51
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=24.98 E-value=2.4e+02 Score=21.88 Aligned_cols=6 Identities=17% Similarity=0.074 Sum_probs=2.1
Q ss_pred HHHHHH
Q 007823 130 SLCDIV 135 (588)
Q Consensus 130 ~l~~~v 135 (588)
.+...+
T Consensus 48 ~m~~~l 53 (114)
T 3zcc_A 48 RLRRSL 53 (114)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 52
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.77 E-value=6.4e+02 Score=26.68 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007823 160 HEKAVIDLKKKVTASRALYCS 180 (588)
Q Consensus 160 ~~~a~~~l~~~i~~~kd~~~s 180 (588)
......+...-+..+++.|..
T Consensus 107 isn~Ts~a~~~v~~ik~s~~~ 127 (461)
T 3ghg_B 107 VSQTSSSSFQYMYLLKDLWQK 127 (461)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhcc
Confidence 333344444444444444333
No 53
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.37 E-value=1.5e+03 Score=30.38 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=9.7
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 007823 301 QKAYEDQTKSDTEKLIADVT 320 (588)
Q Consensus 301 ~~~~e~~a~~e~~~Ll~~I~ 320 (588)
-+.++-.-+.++.+|+.+++
T Consensus 2317 v~~ErPeLE~~r~~Li~~~~ 2336 (3245)
T 3vkg_A 2317 LKTERPDTHKKRSDLLKIQG 2336 (3245)
T ss_dssp HHHHCHHHHHHHHHHHHTTH
T ss_pred HHHhCccHHHHHHHHHHHHH
Confidence 44444444555555555443
No 54
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.78 E-value=1.5e+03 Score=30.28 Aligned_cols=73 Identities=1% Similarity=-0.012 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007823 121 QVELAQQIGSLCDIVDLSTCQQNEHLK----HVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 193 (588)
Q Consensus 121 ~~~l~~~~~~l~~~v~~~~~qQ~~~l~----~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k 193 (588)
+..+...+..++.+|......--+.+. .-=..+=+|+..+.....+=++.+...++-|..||+-+......|.
T Consensus 1861 ~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~ 1937 (3245)
T 3vkg_A 1861 RDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVK 1937 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666554322111000 0011222344445555555555555566677778877776654443
No 55
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.71 E-value=5e+02 Score=27.09 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH---HHHHhhhH
Q 007823 135 VDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEI---SAFASSNS 211 (588)
Q Consensus 135 v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i~~~kd~~~s~le~i~~l~~~~k~~~~~~le~l---ss~~~~~~ 211 (588)
|+.|...|+.-...--..|+.-|........+...-+..+++.|..--.....-.+.+-+.+..+++++ ...+..+.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007823 212 ESIKEFLASEAREAASIYENLQTTLSTQQ 240 (588)
Q Consensus 212 ~~v~~f~~sl~~e~~sv~~dlq~~L~~Qk 240 (588)
..|.. |..+..-..+.+..|...+..+.
T Consensus 105 ~~i~~-l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 105 SSIRY-LQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 56
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.67 E-value=2.3e+02 Score=20.70 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHH
Q 007823 8 HQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLN 48 (588)
Q Consensus 8 ~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~ 48 (588)
.+..+++..+.|......+..++..+.....+|....+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 57
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.50 E-value=7.8e+02 Score=26.84 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=25.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 306 DQTKSDTEKLIADVTSLVSSHMRRQTELVEAR 337 (588)
Q Consensus 306 ~~a~~e~~~Ll~~I~~Ll~~~~~~q~~~l~~~ 337 (588)
+.-+.++.+++.....+|+.-+..|..++..-
T Consensus 533 ~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g 564 (592)
T 1f5n_A 533 EKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888999899999888753
No 58
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.55 E-value=2.5e+02 Score=26.23 Aligned_cols=109 Identities=19% Similarity=0.134 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHhhhhHHHHHHHHHHhhHHHHHHH-HH
Q 007823 239 QQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKL-IA 317 (588)
Q Consensus 239 Qk~~l~~~~~ql~~~~~~~~~~~~~~s~~l~~fl~~l~~~~~~L~~~~~~~~~~~~~~L~~~~~~~e~~a~~e~~~L-l~ 317 (588)
=+.+++.|..|+++-..+.+.+.++.-....+++.+|.+-...|.+|.. |.+.-.=.++...+-+..- .+
T Consensus 52 v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~h~~---------Lse~l~l~kqLs~sLh~mC~~~ 122 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRNHSQ---------LTEALSLGKRLSKSLHEMCGIE 122 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSSSSH---------HHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHhCCC
Confidence 3467888999999999999999998888888999999888888866643 2222222222222222110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 007823 318 DVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHA 356 (588)
Q Consensus 318 ~I~~Ll~~~~~~q~~~l~~~~~~l~~~~~~~~~~l~~~~ 356 (588)
.|-..|-+-+..|--.+-.+++.+-+.+.....++=.++
T Consensus 123 pld~eLc~~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~ 161 (204)
T 2jqq_A 123 PLEEEICSGLIEQLYKLITASRRILESCADSNSPYIHHL 161 (204)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 111223333555666666677777777777666655443
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.15 E-value=5.7e+02 Score=24.38 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007823 5 LETHQKQLEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTH 80 (588)
Q Consensus 5 le~~~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~ 80 (588)
|...+.+++.+...-..-...+.++..++...+..+...+..+.+.+..++.....+.+ +.....+.+..|..
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~---~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD---TNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHc
Confidence 44555566666655555566677777777777777777777777777777777766665 44444444455543
No 60
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=20.03 E-value=6.5e+02 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007823 293 QMKSIADFQKAYEDQTKSDTEKLIADVTSLVSS 325 (588)
Q Consensus 293 ~~~~L~~~~~~~e~~a~~e~~~Ll~~I~~Ll~~ 325 (588)
+.+++.--..+-+..+.+-. .....|..+|..
T Consensus 179 ~GrGFAVVAdEVRkLAe~t~-~at~~I~~~i~~ 210 (341)
T 3zx6_A 179 QGRGFAVVAGEVRNLAQRSA-QAAREIKSLIED 210 (341)
T ss_dssp TSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55666666666666554333 334566666643
Done!