Query 007823
Match_columns 588
No_of_seqs 120 out of 171
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 11:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007823.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007823hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 66.4 30 0.0022 28.4 11.6 32 221-252 72-103 (144)
2 d2efla1 a.238.1.4 (A:1-288) Fo 56.9 64 0.0046 28.5 30.9 21 120-140 3-23 (288)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 54.8 35 0.0025 28.0 9.8 29 233-261 51-79 (144)
4 d2efka1 a.238.1.4 (A:10-288) C 36.6 1.3E+02 0.0094 26.1 21.3 160 12-173 90-249 (279)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 26.8 1.1E+02 0.0079 22.2 8.2 33 9-41 1-33 (72)
6 d1yvia1 a.24.10.2 (A:2-143) Hi 21.8 1.8E+02 0.013 23.1 12.5 31 182-212 71-102 (142)
7 d2ysca1 b.72.1.1 (A:8-33) Amyl 19.5 12 0.00089 21.7 0.2 7 525-531 19-25 (26)
8 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 10.2 3.9E+02 0.028 21.2 15.9 31 124-154 86-116 (196)
9 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 9.7 1.3E+02 0.0093 21.2 3.5 21 28-48 30-50 (67)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 9.2 4.1E+02 0.03 20.8 8.5 39 287-325 83-127 (129)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=66.42 E-value=30 Score=28.43 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007823 221 EAREAASIYENLQTTLSTQQGEMAIFAREMRQ 252 (588)
Q Consensus 221 l~~e~~sv~~dlq~~L~~Qk~~l~~~~~ql~~ 252 (588)
+..++..+-..|...+.+-+..|.....++++
T Consensus 72 l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~ 103 (144)
T d1gs9a_ 72 LSKELQAAQARLGADMEDVRGRLVQYRGEVQA 103 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444433333333
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.88 E-value=64 Score=28.49 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 007823 120 FQVELAQQIGSLCDIVDLSTC 140 (588)
Q Consensus 120 f~~~l~~~~~~l~~~v~~~~~ 140 (588)
|+..|.+.++.|..++.....
T Consensus 3 ~~~~l~d~~~~l~~~~~~~~~ 23 (288)
T d2efla1 3 WGTELWDQFDNLEKHTQWGID 23 (288)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHH
Confidence 444455555555555555544
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=54.79 E-value=35 Score=28.00 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 233 QTTLSTQQGEMAIFAREMRQRFQVTIERT 261 (588)
Q Consensus 233 q~~L~~Qk~~l~~~~~ql~~~~~~~~~~~ 261 (588)
..++...+..|.-+..+++..+...++..
T Consensus 51 ~~~~~~l~~~l~p~~~e~~~~l~~~~e~l 79 (144)
T d1gs9a_ 51 KAYKSELEEQLTPVAEETRARLSKELQAA 79 (144)
T ss_dssp HHHHHHHTTSCCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333333444455555444444433
No 4
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.61 E-value=1.3e+02 Score=26.12 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007823 12 LEELQDKYDCQVRQCSDLTTKLELTESNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAENALTHQACTLRGNLEK 91 (588)
Q Consensus 12 ~~~~~~~~~~~~~~~~dlk~ele~t~~~L~~T~~~L~~Te~~L~~tk~~l~Ee~~l~~~~~~tE~~L~~~A~~L~~~l~~ 91 (588)
+..+..+........-.+..+.......|......|...+..+..+...++.-.-........=..--.....+...+..
T Consensus 90 ~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~ 169 (279)
T d2efka1 90 CLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHL 169 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Q ss_pred hhchhHHHhHhhhhhHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007823 92 ALQDNVLLFQKIGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKV 171 (588)
Q Consensus 92 s~~Dv~gLh~Kl~Rk~~le~~Nr~~~~~f~~~l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~sfv~~~~~a~~~l~~~i 171 (588)
+..++...+..+. ..|...|...-.-|...|-..++.+..........-...+..+.....++..........+...+
T Consensus 170 ~~~~~~~~~~~y~--~~l~~~n~~~~~~~~~~~p~~l~~lq~~e~~r~~~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (279)
T d2efka1 170 RSHMAEESKNEYA--AQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAA 247 (279)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred HH
Q 007823 172 TA 173 (588)
Q Consensus 172 ~~ 173 (588)
..
T Consensus 248 ~~ 249 (279)
T d2efka1 248 NA 249 (279)
T ss_dssp HH
T ss_pred HH
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.80 E-value=1.1e+02 Score=22.19 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHhHH
Q 007823 9 QKQLEELQDKYDCQVRQCSDLTTKLELTESNLD 41 (588)
Q Consensus 9 ~k~~~~~~~~~~~~~~~~~dlk~ele~t~~~L~ 41 (588)
+|.++.|++..++...+..+.+.++...+.+..
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k 33 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAK 33 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888777777777777765544
No 6
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=21.84 E-value=1.8e+02 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHhhhHH
Q 007823 182 MEAVQNVVRLHKACSNA-NLEEISAFASSNSE 212 (588)
Q Consensus 182 le~i~~l~~~~k~~~~~-~le~lss~~~~~~~ 212 (588)
...+..++..+|..++. |+..+...+..+-.
T Consensus 71 ~~~~~~~aH~LKGss~~lGa~~l~~~~~~lE~ 102 (142)
T d1yvia1 71 FDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQ 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhhccHHHHHHHHHHHHH
Confidence 56777788888876644 34444444444333
No 7
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.53 E-value=12 Score=21.66 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=5.3
Q ss_pred ccCCCCC
Q 007823 525 YEHTGTT 531 (588)
Q Consensus 525 d~PTGtT 531 (588)
-+|||+|
T Consensus 19 HiPtGtT 25 (26)
T d2ysca1 19 HVPSGST 25 (26)
T ss_dssp ESSSCCE
T ss_pred eccCCcc
Confidence 4788887
No 8
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.23 E-value=3.9e+02 Score=21.25 Aligned_cols=31 Identities=0% Similarity=-0.052 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007823 124 LAQQIGSLCDIVDLSTCQQNEHLKHVEKLCH 154 (588)
Q Consensus 124 l~~~~~~l~~~v~~~~~qQ~~~l~~~~~~~~ 154 (588)
+......+...+..|...|......+...+.
T Consensus 86 ~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~ 116 (196)
T d1fioa_ 86 AENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666777777766666666554
No 9
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.71 E-value=1.3e+02 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHhHHHHHHHHH
Q 007823 28 DLTTKLELTESNLDQTIKLLN 48 (588)
Q Consensus 28 dlk~ele~t~~~L~~T~~~L~ 48 (588)
|...+|+.|+..|...+.+|.
T Consensus 30 diE~eLerCk~~irrLeqel~ 50 (67)
T d1k1fa_ 30 DIEQELERAKASIRRLEQEVN 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777666655555543
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.19 E-value=4.1e+02 Score=20.82 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=26.0
Q ss_pred HHhhHHhhhhHHHHHHHHHHhh------HHHHHHHHHHHHHHHHH
Q 007823 287 VQADENQMKSIADFQKAYEDQT------KSDTEKLIADVTSLVSS 325 (588)
Q Consensus 287 ~~~~~~~~~~L~~~~~~~e~~a------~~e~~~Ll~~I~~Ll~~ 325 (588)
+.+-+.+.+.|..|+++.++.. -.+.+.|+++|.++|.+
T Consensus 83 ~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~ 127 (129)
T d1ykhb1 83 DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 127 (129)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888877766544 44555677788777764
Done!