Your job contains 1 sequence.
>007824
MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR
NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID
EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH
RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG
LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI
SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT
LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH
YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSES
YSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTE
SSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSCPSFYLQ
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007824
(588 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156309 - symbol:POLH "Y-family DNA polymerase... 1825 3.0e-188 1
ZFIN|ZDB-GENE-060421-4949 - symbol:polh "polymerase (DNA ... 848 1.0e-84 1
UNIPROTKB|F1NAG6 - symbol:POLH "Uncharacterized protein" ... 817 2.0e-81 1
UNIPROTKB|F1NCM3 - symbol:POLH "Uncharacterized protein" ... 817 2.0e-81 1
UNIPROTKB|E2RC81 - symbol:POLH "Uncharacterized protein" ... 808 1.8e-80 1
UNIPROTKB|Q9Y253 - symbol:POLH "DNA polymerase eta" speci... 784 2.2e-80 2
UNIPROTKB|F1RRJ6 - symbol:POLH "Uncharacterized protein" ... 767 2.8e-78 2
RGD|1309893 - symbol:Polh "polymerase (DNA directed), eta... 784 6.2e-78 1
MGI|MGI:1891457 - symbol:Polh "polymerase (DNA directed),... 782 1.0e-77 1
UNIPROTKB|F1MZ79 - symbol:POLH "Uncharacterized protein" ... 749 3.1e-74 1
FB|FBgn0037141 - symbol:DNApol-eta "DNApol-eta" species:7... 727 6.7e-72 1
UNIPROTKB|B4DG64 - symbol:POLH "DNA polymerase eta" speci... 576 1.8e-58 2
WB|WBGene00018721 - symbol:polh-1 species:6239 "Caenorhab... 574 1.1e-55 1
UNIPROTKB|I3LUT8 - symbol:LOC100737500 "Uncharacterized p... 379 8.4e-35 1
ASPGD|ASPL0000072145 - symbol:AN4678 species:162425 "Emer... 303 4.8e-34 2
POMBASE|SPBC16A3.11 - symbol:eso1 "sister chromatid cohes... 371 2.6e-31 1
UNIPROTKB|Q47155 - symbol:dinB species:83333 "Escherichia... 202 6.7e-29 2
UNIPROTKB|Q83EN5 - symbol:dinP "DNA polymerase IV" specie... 198 5.2e-28 2
TIGR_CMR|CBU_0280 - symbol:CBU_0280 "DNA-damage-inducible... 198 5.2e-28 2
UNIPROTKB|Q9UNA4 - symbol:POLI "DNA polymerase iota" spec... 208 4.9e-26 2
ZFIN|ZDB-GENE-050417-376 - symbol:poli "polymerase (DNA d... 191 7.8e-25 2
UNIPROTKB|G5EH81 - symbol:MGCH7_ch7g688 "Sister chromatid... 309 1.5e-24 1
TAIR|locus:2156319 - symbol:REV1 species:3702 "Arabidopsi... 202 1.9e-24 2
TIGR_CMR|CHY_1651 - symbol:CHY_1651 "DNA polymerase IV - ... 190 1.1e-23 2
UNIPROTKB|Q8EHU9 - symbol:dinB "DNA polymerase IV" specie... 181 1.4e-23 2
TIGR_CMR|SO_1114 - symbol:SO_1114 "DNA-damage-inducible p... 181 1.4e-23 2
UNIPROTKB|F1MHR0 - symbol:POLI "Uncharacterized protein" ... 178 3.3e-23 2
UNIPROTKB|Q81M86 - symbol:dinB "DNA polymerase IV" specie... 197 4.0e-23 2
TIGR_CMR|BA_4366 - symbol:BA_4366 "DNA-damage-inducible p... 197 4.0e-23 2
UNIPROTKB|Q9KPS5 - symbol:dinB "DNA polymerase IV" specie... 168 1.3e-21 2
TIGR_CMR|VC_2287 - symbol:VC_2287 "DNA-damage-inducible p... 168 1.3e-21 2
UNIPROTKB|Q71Y46 - symbol:dinB "DNA polymerase IV" specie... 163 1.4e-21 2
UNIPROTKB|F1NCT8 - symbol:POLK "Uncharacterized protein" ... 289 1.6e-21 2
CGD|CAL0002818 - symbol:RAD32 species:5476 "Candida albic... 237 6.1e-21 2
ASPGD|ASPL0000012133 - symbol:AN3909 species:162425 "Emer... 185 6.9e-21 2
UNIPROTKB|G3V8W7 - symbol:Polk "Protein Polk" species:101... 170 8.4e-21 3
TIGR_CMR|CPS_1040 - symbol:CPS_1040 "DNA polymerase IV" s... 177 1.2e-20 2
MGI|MGI:1349767 - symbol:Polk "polymerase (DNA directed),... 170 1.3e-20 2
UNIPROTKB|F1NCT7 - symbol:POLK "Uncharacterized protein" ... 274 2.1e-20 2
UNIPROTKB|F1S2I2 - symbol:POLK "Uncharacterized protein" ... 168 2.5e-20 3
UNIPROTKB|E2RAS5 - symbol:POLK "Uncharacterized protein" ... 171 4.7e-20 3
UNIPROTKB|J9P5L3 - symbol:POLK "Uncharacterized protein" ... 168 9.7e-20 3
TAIR|locus:2031050 - symbol:AT1G49980 species:3702 "Arabi... 168 1.2e-19 2
POMBASE|SPBC1347.01c - symbol:rev1 "deoxycytidyl transfer... 162 1.2e-19 2
UNIPROTKB|D6RAE5 - symbol:POLK "DNA polymerase kappa" spe... 156 2.0e-19 2
UNIPROTKB|Q5Q9G8 - symbol:POLK "Polymerase kappa isoform ... 160 2.6e-19 2
POMBASE|SPCC553.07c - symbol:kpa1 "DinB translesion DNA r... 171 3.2e-19 2
UNIPROTKB|Q9UBT6 - symbol:POLK "DNA polymerase kappa" spe... 160 3.4e-19 2
UNIPROTKB|Q5Q9G5 - symbol:POLK "DNA polymerase kappa" spe... 156 3.6e-19 2
FB|FBgn0037554 - symbol:DNApol-iota "DNApol-iota" species... 173 3.8e-19 2
UNIPROTKB|Q5Q9G7 - symbol:POLK "DNA polymerase kappa" spe... 156 4.5e-19 2
UNIPROTKB|Q74H50 - symbol:dinB "DNA polymerase IV" specie... 157 4.8e-19 2
TIGR_CMR|GSU_0043 - symbol:GSU_0043 "ImpB/MucB/SamB famil... 157 4.8e-19 2
UNIPROTKB|Q74CQ6 - symbol:dinB "DNA polymerase IV" specie... 156 1.2e-18 2
TIGR_CMR|GSU_1616 - symbol:GSU_1616 "ImpB/MucB/SamB famil... 156 1.2e-18 2
UNIPROTKB|Q8AWW1 - symbol:DINB1 "Uncharacterized protein"... 263 1.4e-18 2
UNIPROTKB|A6QNV6 - symbol:POLK "Uncharacterized protein" ... 262 1.5e-18 2
UNIPROTKB|P63987 - symbol:dinB2 "DNA polymerase IV 2" spe... 157 3.3e-17 2
UNIPROTKB|E9PST4 - symbol:Polk "Protein Polk" species:101... 158 5.5e-17 3
UNIPROTKB|D6R9M8 - symbol:POLK "DNA polymerase kappa" spe... 156 6.7e-17 2
UNIPROTKB|J3KTN3 - symbol:POLI "DNA polymerase iota" spec... 138 1.2e-16 2
UNIPROTKB|E9PST3 - symbol:Polk "Protein Polk" species:101... 158 2.5e-16 3
UNIPROTKB|E2RPL9 - symbol:REV1 "Uncharacterized protein" ... 145 3.5e-16 4
ASPGD|ASPL0000030996 - symbol:AN5620 species:162425 "Emer... 227 3.7e-16 2
FB|FBgn0035150 - symbol:Rev1 "Rev1" species:7227 "Drosoph... 147 4.5e-16 3
UNIPROTKB|F1P5H4 - symbol:REV1 "DNA repair protein REV1" ... 140 1.1e-15 3
UNIPROTKB|Q4KWZ7 - symbol:REV1 "DNA repair protein REV1" ... 140 1.1e-15 3
UNIPROTKB|J3KQ09 - symbol:POLI "DNA polymerase iota" spec... 206 2.4e-15 2
UNIPROTKB|Q3ZAI3 - symbol:dinB "DNA polymerase IV" specie... 147 3.3e-15 2
TIGR_CMR|DET_0011 - symbol:DET_0011 "DNA polymerase IV, p... 147 3.3e-15 2
UNIPROTKB|P63985 - symbol:dinB1 "DNA polymerase IV 1" spe... 158 3.3e-15 2
UNIPROTKB|F1STE9 - symbol:REV1 "Uncharacterized protein" ... 143 7.1e-15 3
UNIPROTKB|Q0BZW2 - symbol:dinB "DNA polymerase IV" specie... 137 1.1e-14 2
RGD|1305212 - symbol:Poli "polymerase (DNA directed), iot... 229 1.3e-14 2
MGI|MGI:1347081 - symbol:Poli "polymerase (DNA directed),... 225 3.3e-14 2
UNIPROTKB|F1S1Z7 - symbol:POLI "Uncharacterized protein" ... 187 5.0e-14 2
UNIPROTKB|J3KSW2 - symbol:POLI "DNA polymerase iota" spec... 169 8.4e-14 2
RGD|1306715 - symbol:Rev1 "REV1, polymerase (DNA directed... 138 1.4e-13 3
UNIPROTKB|F1PDA5 - symbol:POLI "Uncharacterized protein" ... 213 3.2e-13 2
CGD|CAL0001748 - symbol:orf19.4412 species:5476 "Candida ... 135 3.4e-13 2
TIGR_CMR|SPO_3280 - symbol:SPO_3280 "DNA polymerase IV, p... 136 5.1e-13 2
WB|WBGene00017696 - symbol:polk-1 species:6239 "Caenorhab... 199 1.8e-12 1
SGD|S000002827 - symbol:RAD30 "DNA polymerase eta, involv... 116 8.4e-12 3
UNIPROTKB|Q5JTF2 - symbol:POLH "DNA polymerase eta" speci... 165 2.5e-11 1
DICTYBASE|DDB_G0287149 - symbol:DDB_G0287149 "UMUC-like D... 116 3.9e-11 3
ZFIN|ZDB-GENE-081105-180 - symbol:si:dkey-57a22.7 "si:dke... 191 2.0e-10 2
UNIPROTKB|J3QR36 - symbol:POLI "DNA polymerase iota" spec... 129 2.5e-10 2
UNIPROTKB|F1N787 - symbol:REV1 "Uncharacterized protein" ... 183 2.7e-10 1
UNIPROTKB|Q9UBZ9 - symbol:REV1 "DNA repair protein REV1" ... 182 1.2e-09 2
MGI|MGI:1929074 - symbol:Rev1 "REV1 homolog (S. cerevisia... 139 1.7e-09 3
UNIPROTKB|F1MAB3 - symbol:Polk "Protein Polk" species:101... 170 4.1e-09 2
UNIPROTKB|J3KRG0 - symbol:POLI "DNA polymerase iota" spec... 97 4.7e-09 2
UNIPROTKB|D4A662 - symbol:Polk "Protein Polk" species:101... 158 1.3e-08 2
ASPGD|ASPL0000039840 - symbol:AN3373 species:162425 "Emer... 158 5.6e-08 1
ZFIN|ZDB-GENE-060526-137 - symbol:polk "polymerase (DNA d... 160 5.7e-08 1
UNIPROTKB|Q81NC2 - symbol:BAS3053 "ImpB/mucB/samB family ... 124 1.6e-06 2
TIGR_CMR|BA_3288 - symbol:BA_3288 "impB/mucB/samB family ... 124 1.6e-06 2
UNIPROTKB|P04152 - symbol:umuC species:83333 "Escherichia... 101 1.8e-06 2
>TAIR|locus:2156309 [details] [associations]
symbol:POLH "Y-family DNA polymerase H" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0042732 "D-xylose metabolic process" evidence=RCA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:CP002688
GO:GO:0003684 GO:GO:0010224 GO:GO:0003887 GO:GO:0042276
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AJ416380 IPI:IPI00537089
RefSeq:NP_568638.2 UniGene:At.19023 SMR:Q8H2D5 IntAct:Q8H2D5
STRING:Q8H2D5 EnsemblPlants:AT5G44740.2 GeneID:834503
KEGG:ath:AT5G44740 TAIR:At5g44740 InParanoid:Q8H2D5 OMA:CPLRYGT
ProtClustDB:CLSN2680435 Genevestigator:Q8H2D5 Uniprot:Q8H2D5
Length = 672
Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
Identities = 362/564 (64%), Positives = 425/564 (75%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360
Query: 361 LTLHXXXXXXXXXXXXXXXXXXXCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLH CP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNK 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSE 479
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE
Sbjct: 421 LETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRSA---DGCVQGNVAMTASASE 477
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP-SCSISKQTSGQWFHSG 538
S STE Q +P + +++ + + + + D SC ++ T
Sbjct: 478 GCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNEATDVSTQSES 537
Query: 539 TESSSSLDQNKPQNRDDSRMRSVP 562
+ + + + N + R +P
Sbjct: 538 NKGTQTKKIGRKMNNSKEKNRGMP 561
>ZFIN|ZDB-GENE-060421-4949 [details] [associations]
symbol:polh "polymerase (DNA directed), eta"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 ZFIN:ZDB-GENE-060421-4949 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AL929536 IPI:IPI00758987 Ensembl:ENSDART00000139589
OMA:MKSLEKH ArrayExpress:F1Q7Z9 Bgee:F1Q7Z9 Uniprot:F1Q7Z9
Length = 749
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 192/470 (40%), Positives = 274/470 (58%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D R++A VD+DCFYVQVEQR +P+L+ P V QY WKGGG+IAV YEAR +GV R
Sbjct: 2 DFGKERVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGR 61
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M D+A+++CP +++ +VP A GKADL+ YR A EV+ +++R ERASIDE Y+DL
Sbjct: 62 NMFADDARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFAVIERASIDEAYMDL 121
Query: 127 TDAAEAMLAETPPESLDEVDEEALKS-HILGLESKDGN-----DSK--ATVKEWL----C 174
T + + L T S+ ++ + LK+ HI G ++ N D++ A +++WL
Sbjct: 122 TASVQERLKNT---SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSS 178
Query: 175 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
++ D LA G LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P
Sbjct: 179 STESSPADLRLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLP 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SSV L +LPI K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG WL+
Sbjct: 239 LSSVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ RGI E V+ R LPKS G K+F G L+T VQ+WL+QL EL ERL D + N
Sbjct: 299 DLCRGIEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVN 358
Query: 355 KRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 413
R+A LT+ C L RY K+ D+ + ++
Sbjct: 359 GRVARQLTV----GVRQAGGQRSGSFSRCCALVRYDAMKMTNDSLTIIKS---------- 404
Query: 414 VKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 461
+ T G+H W +T L +SASK S + + + F D S S+
Sbjct: 405 LNTAGAHQEAWSPALTLLHLSASKFSDAPSSSSAGITGFLSSDAASSPSQ 454
>UNIPROTKB|F1NAG6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AADN02011866 EMBL:AADN02011865 IPI:IPI00596429
Ensembl:ENSGALT00000016798 ArrayExpress:F1NAG6 Uniprot:F1NAG6
Length = 686
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 189/431 (43%), Positives = 251/431 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF++QVEQR P+LRG P AVVQYN+W+GGG+IAV YEAR +GV R M
Sbjct: 7 RVVALVDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWAT 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASI + YLDLT +A
Sbjct: 67 EARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIFKGYLDLTGSAR 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-VKEWLCRCDADH---RDKLLAC 187
E L + L + GL+ D + + ++EWL D+ D LA
Sbjct: 127 ERXXXA--ELLPTTFVQGLPAEP-GLQPADKEELRRRGLQEWLASLSFDNVNCPDLQLAM 183
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV L +P+
Sbjct: 184 GAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPV 243
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RGI E V+
Sbjct: 244 SSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKN 303
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHXXX 367
R LP+S G K+FPG AL T VQHWL QL EL RL D QN R+A L +
Sbjct: 304 RHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQLMV---- 359
Query: 368 XXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 426
C + RY KI D F L Q G+H + W
Sbjct: 360 ---VIRMQGDTRLSRFCAVTRYDAQKIFNDAFALIQ----------NCNMAGAHQAAWSP 406
Query: 427 TALSV--SASK 435
+SV +ASK
Sbjct: 407 PLISVHLAASK 417
>UNIPROTKB|F1NCM3 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 EMBL:AADN02011866
EMBL:AADN02011865 IPI:IPI00818532 Ensembl:ENSGALT00000038044
ArrayExpress:F1NCM3 Uniprot:F1NCM3
Length = 657
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 189/431 (43%), Positives = 251/431 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF++QVEQR P+LRG P AVVQYN+W+GGG+IAV YEAR +GV R M
Sbjct: 7 RVVALVDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWAT 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASI + YLDLT +A
Sbjct: 67 EARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIFKGYLDLTGSAR 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-VKEWLCRCDADH---RDKLLAC 187
E L + L + GL+ D + + ++EWL D+ D LA
Sbjct: 127 ERXXXA--ELLPTTFVQGLPAEP-GLQPADKEELRRRGLQEWLASLSFDNVNCPDLQLAM 183
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV L +P+
Sbjct: 184 GAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPV 243
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RGI E V+
Sbjct: 244 SSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKN 303
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHXXX 367
R LP+S G K+FPG AL T VQHWL QL EL RL D QN R+A L +
Sbjct: 304 RHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQLMV---- 359
Query: 368 XXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 426
C + RY KI D F L Q G+H + W
Sbjct: 360 ---VIRMQGDTRLSRFCAVTRYDAQKIFNDAFALIQ----------NCNMAGAHQAAWSP 406
Query: 427 TALSV--SASK 435
+SV +ASK
Sbjct: 407 PLISVHLAASK 417
>UNIPROTKB|E2RC81 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0006301 "postreplication repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0003887
GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:AAEX03008345 RefSeq:XP_532150.2
Ensembl:ENSCAFT00000003028 GeneID:474915 KEGG:cfa:474915
NextBio:20850851 Uniprot:E2RC81
Length = 712
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 189/460 (41%), Positives = 257/460 (55%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ IL+R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G D K + +WL D+
Sbjct: 127 ERLQNLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNNTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPISKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ C L RY K+ D F + + + G+KT S
Sbjct: 367 AV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKN-----CNTSGIKTDWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTS 460
+T L + A+K +C+ + F D T+
Sbjct: 418 ----PLTMLFLCATKFSAPAPSSCTDITTFLSSDPSSVTN 453
>UNIPROTKB|Q9Y253 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0010225 "response to UV-C" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=TAS] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_216
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0005654 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0006282
GO:GO:0003887 GO:GO:0006290 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CleanEx:HS_POLH KO:K03509 EMBL:AL353602
EMBL:AB024313 EMBL:AF158185 EMBL:AB038008 EMBL:AY388614
EMBL:AL355802 EMBL:BC015742 IPI:IPI00008011 IPI:IPI00552037
RefSeq:NP_006493.1 UniGene:Hs.655467 PDB:2I5O PDB:2LSK PDB:3MR2
PDB:3MR3 PDB:3MR5 PDB:3MR6 PDB:3SI8 PDB:3TQ1 PDB:4DL2 PDB:4DL3
PDB:4DL4 PDB:4DL5 PDB:4DL6 PDB:4DL7 PDB:4ECQ PDB:4ECR PDB:4ECS
PDB:4ECT PDB:4ECU PDB:4ECV PDB:4ECW PDB:4ECX PDB:4ECY PDB:4ECZ
PDB:4ED0 PDB:4ED1 PDB:4ED2 PDB:4ED3 PDB:4ED6 PDB:4ED7 PDB:4ED8
PDB:4EEY PDBsum:2I5O PDBsum:2LSK PDBsum:3MR2 PDBsum:3MR3
PDBsum:3MR5 PDBsum:3MR6 PDBsum:3SI8 PDBsum:3TQ1 PDBsum:4DL2
PDBsum:4DL3 PDBsum:4DL4 PDBsum:4DL5 PDBsum:4DL6 PDBsum:4DL7
PDBsum:4ECQ PDBsum:4ECR PDBsum:4ECS PDBsum:4ECT PDBsum:4ECU
PDBsum:4ECV PDBsum:4ECW PDBsum:4ECX PDBsum:4ECY PDBsum:4ECZ
PDBsum:4ED0 PDBsum:4ED1 PDBsum:4ED2 PDBsum:4ED3 PDBsum:4ED6
PDBsum:4ED7 PDBsum:4ED8 PDBsum:4EEY ProteinModelPortal:Q9Y253
SMR:Q9Y253 IntAct:Q9Y253 MINT:MINT-2789553 STRING:Q9Y253
PhosphoSite:Q9Y253 DMDM:59798441 PRIDE:Q9Y253
Ensembl:ENST00000372226 Ensembl:ENST00000372236 GeneID:5429
KEGG:hsa:5429 UCSC:uc003ovq.4 CTD:5429 GeneCards:GC06P043543
HGNC:HGNC:9181 HPA:HPA006721 HPA:HPA026762 MIM:278750 MIM:603968
neXtProt:NX_Q9Y253 Orphanet:90342 PharmGKB:PA279
HOGENOM:HOG000115605 HOVERGEN:HBG053633 InParanoid:Q9Y253
OMA:SPPLTML OrthoDB:EOG4RBQJ8 PhylomeDB:Q9Y253 SABIO-RK:Q9Y253
BindingDB:Q9Y253 ChEMBL:CHEMBL5542 EvolutionaryTrace:Q9Y253
GenomeRNAi:5429 NextBio:21005 ArrayExpress:Q9Y253 Bgee:Q9Y253
Genevestigator:Q9Y253 GermOnline:ENSG00000170734 InterPro:IPR017061
PIRSF:PIRSF036603 Uniprot:Q9Y253
Length = 713
Score = 784 (281.0 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 174/402 (43%), Positives = 236/402 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQ 402
+ C L RY K+ D F + +
Sbjct: 367 VV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
Score = 42 (19.8 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 537 SGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKS-----ALKDKVHSCPSFY 586
S + SSS D + D S + VP+ S++ + + S A K S SF+
Sbjct: 430 SASAPSSSTDITSFLSSDPSSLPKVPVTSSEAKTQGSGPAVTATKKATTSLESFF 484
>UNIPROTKB|F1RRJ6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509 CTD:5429
OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:CR974460 RefSeq:XP_003356678.1
UniGene:Ssc.83954 Ensembl:ENSSSCT00000001879 GeneID:100153104
KEGG:ssc:100153104 Uniprot:F1RRJ6
Length = 698
Score = 767 (275.1 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
Identities = 176/448 (39%), Positives = 257/448 (57%)
Query: 8 SSGA-RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
S+G R++A +D+DCF+VQVEQR+ P L+ P AVVQY WKGGG+++V YEAR +GV +
Sbjct: 2 SNGQDRVVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTK 61
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
SM D+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE ++DL
Sbjct: 62 SMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAFVDL 121
Query: 127 TDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDAD 179
T A L + P S D + ++ GL + +G K ++ +WL +D
Sbjct: 122 TSAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRKQGLLQWLDSLQSD 181
Query: 180 HRDK---LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
+ L G +IV E+R + ++T CSAGI+HNK+LAKLA ++KP +QT V
Sbjct: 182 NTSSPELQLTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLG 241
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
SV + +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 242 SVPQVFSQMPISKVRHLGGKLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAM 301
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
RGI E V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D N R
Sbjct: 302 CRGIEHEPVRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDR 361
Query: 357 IAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 415
+A L + C L Y K+ +D F A +R + S G++
Sbjct: 362 VATQLAV----SIRVLGDKRLSSLRRCCALTHYDAHKMSQDAF----AAIRNYNTS-GIQ 412
Query: 416 TQGSHYSGWRITALSVSASKIVPVLSGT 443
T+ S +T L + A+K +GT
Sbjct: 413 TEWSP----PLTMLFLCATKFSASSAGT 436
Score = 39 (18.8 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
Identities = 33/143 (23%), Positives = 54/143 (37%)
Query: 450 FNGPDKFGSTSEQLPDNFIDAAPLSPSG---SESYSTLNSTEL-QNELPGEQVWIEHSMA 505
F P K S+ ++LP + D P + + +T +L QN + +E + A
Sbjct: 548 FFPPQKPQSSPKELPTEYPDGGPACENALKLDSAQATPAEVDLAQNSSLTSKSALEEATA 607
Query: 506 DLGQL----EMKANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSV 561
L L ++ L P + + +H E S Q P + S ++V
Sbjct: 608 TLSLLAAEDQVLCEKCGSLVPVWETPEHSD---YHFALELQKSFLQ--PHS---STSQAV 659
Query: 562 PIKSNQQEHK-KSALKDKVHSCP 583
P +S Q + KS L H P
Sbjct: 660 PARSPQSKRNPKSPLASS-HKRP 681
>RGD|1309893 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta" species:10116
"Rattus norvegicus" [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0010225 "response to UV-C" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1309893 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
EMBL:CH473987 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML OrthoDB:EOG4RBQJ8 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 IPI:IPI00194322
RefSeq:NP_001101674.1 UniGene:Rn.53711 Ensembl:ENSRNOT00000026049
GeneID:316235 KEGG:rno:316235 UCSC:RGD:1309893 NextBio:670614
Uniprot:D4ADZ0
Length = 689
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 193/489 (39%), Positives = 270/489 (55%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D+
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWADD 67
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEA 132
AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT+A +
Sbjct: 68 AKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAYIDLTNAVQE 127
Query: 133 MLAETP--PESLDEVDEEALKSHILGLESKDGNDS----KATVKEWLCRCDADHR---DK 183
L + P S D + ++ G +D + K + +WL + D D
Sbjct: 128 RLEKLQGQPVSADLLPSTYIEGLPRGPAVEDTVEKEDIRKQGLLQWLGSLEKDDPTSPDL 187
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 188 RLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFS 247
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+PI+K++ LGGKLG S+ + LGV +GDL +F+E +LQ +G G+WL+ + RGI E
Sbjct: 248 QMPIRKIRSLGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHE 307
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R+A L +
Sbjct: 308 PVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDNGRVATQLVV 367
Query: 364 HXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
C L RY K+ +D F A +R + GV+T+ S
Sbjct: 368 ----SIRVEGDKRLSSLRRCCALTRYDAHKMSQDAF----ATIRN-CNTSGVQTEWSP-- 416
Query: 423 GWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP-----DNFIDAAPLSPSG 477
+T L + A+K C+ + F D ++P + P +P+
Sbjct: 417 --PLTMLFLCATKFSASAPPACTDITVFLSSDS--GCQPKVPAASSGTRTQEPGPAAPTS 472
Query: 478 SESYSTLNS 486
E+ ++L S
Sbjct: 473 KEAATSLES 481
>MGI|MGI:1891457 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta (RAD 30
related)" species:10090 "Mus musculus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0010225 "response to UV-C"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1891457 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 HOGENOM:HOG000115605 HOVERGEN:HBG053633 OMA:SPPLTML
OrthoDB:EOG4RBQJ8 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AB027128 EMBL:AB037184 EMBL:AK036296 IPI:IPI00122040
RefSeq:NP_109640.1 UniGene:Mm.311585 ProteinModelPortal:Q9JJN0
SMR:Q9JJN0 IntAct:Q9JJN0 STRING:Q9JJN0 PhosphoSite:Q9JJN0
PRIDE:Q9JJN0 Ensembl:ENSMUST00000024749 GeneID:80905 KEGG:mmu:80905
UCSC:uc008crx.1 GeneTree:ENSGT00530000062942 InParanoid:Q9JJN0
NextBio:350254 Bgee:Q9JJN0 CleanEx:MM_POLH Genevestigator:Q9JJN0
GermOnline:ENSMUSG00000023953 Uniprot:Q9JJN0
Length = 694
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 192/490 (39%), Positives = 269/490 (54%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVKE----WLCRCDADHR---D 182
L + P S D + ++ G ++ +A K+ WL +D D
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTSPD 186
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 LRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLF 246
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 SQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEH 306
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
+ V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R+A L
Sbjct: 307 DPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDRVATQLV 366
Query: 363 LHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 421
+ C L RY K+ +D F A +R + G++T+ S
Sbjct: 367 V----SIRFQGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQTEWSP- 416
Query: 422 SGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-----AAPLSPS 476
+T L + A+K C+ + F D S ++P + + P P+
Sbjct: 417 ---PLTMLFLCATKFSAAAPPACTDITAFLSSDS--SCQPKVPIASSETRTQGSGPAVPT 471
Query: 477 GSESYSTLNS 486
E+ ++L S
Sbjct: 472 SKEAATSLAS 481
>UNIPROTKB|F1MZ79 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:DAAA02055099 IPI:IPI00691559 Ensembl:ENSBTAT00000007900
Uniprot:F1MZ79
Length = 710
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 161/362 (44%), Positives = 221/362 (61%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCF-VQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE YLDLT A +
Sbjct: 66 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAYLDLTSAVQ 125
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G K + +WL +
Sbjct: 126 ERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSSP 185
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 186 DLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 245
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI
Sbjct: 246 FNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWLYAMCRGIE 305
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 306 HDPVKPRPITKTLGCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQL 365
Query: 362 TL 363
+
Sbjct: 366 VV 367
>FB|FBgn0037141 [details] [associations]
symbol:DNApol-eta "DNApol-eta" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0000724 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HSSP:P96022 InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AY058771
EMBL:AB049433 EMBL:AB036766 IntAct:Q9GNC0 STRING:Q9GNC0
FlyBase:FBgn0037141 InParanoid:Q9GNC0 OrthoDB:EOG4XPNX1
Uniprot:Q9GNC0
Length = 885
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 175/457 (38%), Positives = 247/457 (54%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + + +E + + +G S +K T + + D +
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 196 PAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 255
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ L DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ + GTWL+N
Sbjct: 256 TETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFN 315
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 354
I+RGI E V R KS G K FPG + + ++QHWL +L E+++RL D +E N
Sbjct: 316 ISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENN 375
Query: 355 KRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPLR-YGTAKIQEDTFNLFQAGLREFLGSFG 413
+R H + + LR Y I + +L +A + FL G
Sbjct: 376 RRAKHMVVQYVQDIDGEEVASSRSTA-----LRDYDQESIVRLSLDLIKANTKTFLRP-G 429
Query: 414 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
++ ++ I L +S K V SG + + F
Sbjct: 430 SESALNN----AIKFLGISVGKFETVSSGQNKLQEMF 462
>UNIPROTKB|B4DG64 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0006301
GO:GO:0003887 GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879
EMBL:AL353602 EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181
HOVERGEN:HBG053633 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AK294430 IPI:IPI00646080 SMR:B4DG64 STRING:B4DG64
Ensembl:ENST00000535400 Uniprot:B4DG64
Length = 651
Score = 576 (207.8 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 136/346 (39%), Positives = 191/346 (55%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 128 DAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 180
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 61 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDN 120
Query: 181 R---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 121 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 180
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 181 VPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMC 240
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 241 RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV 300
Query: 358 AHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQ 402
A L + C L RY K+ D F + +
Sbjct: 301 ATQLVV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
Score = 42 (19.8 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 537 SGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKS-----ALKDKVHSCPSFY 586
S + SSS D + D S + VP+ S++ + + S A K S SF+
Sbjct: 368 SASAPSSSTDITSFLSSDPSSLPKVPVTSSEAKTQGSGPAVTATKKATTSLESFF 422
>WB|WBGene00018721 [details] [associations]
symbol:polh-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:FO080224 EMBL:AB244413 PIR:A88395
RefSeq:NP_497480.2 UniGene:Cel.10441 ProteinModelPortal:G5EFY1
SMR:G5EFY1 EnsemblMetazoa:F53A3.2 GeneID:175337
KEGG:cel:CELE_F53A3.2 CTD:175337 WormBase:F53A3.2 OMA:GVGNNKM
NextBio:887718 Uniprot:G5EFY1
Length = 584
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 136/364 (37%), Positives = 209/364 (57%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R+I+ +D+DCFY QVEQR P L G P VVQ++ +G GG++AV YEAR +GVKR M
Sbjct: 3 RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSR-QGIEGGILAVSYEARPFGVKRGMT 61
Query: 70 GDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYL 124
EAK CPQI + VP+ KAD+ YR+A +EV +L E+AS+DE +L
Sbjct: 62 VAEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFL 121
Query: 125 DLTDAAEAMLAETPP-ESLDEVDEEALK----SHIL-GLESKDGNDSKATVK-EWLCRCD 177
DL+ L E E L+E + A+ +H+ G + K+ + V E++
Sbjct: 122 DLSAYTNQKLQELRENEGLEEFLQAAITYLPTTHLATGEDVKENEHLREDVLLEYIENAR 181
Query: 178 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
+ LL + V ++R Q+ +ET+F CSAG+ +NKM+AKL +KP QQT +P+
Sbjct: 182 NCTENLLLLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPWFY 241
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V+ +L PI ++ GGK+G +Q L +T +G+LL+ +L E++ N +L ++A
Sbjct: 242 VREILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFP-NQHEYLRSVA 300
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
G E V+ R S K+FPG ++++V ++ WL+ L +EL++RL +D +NKR
Sbjct: 301 EGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQAENKRT 360
Query: 358 AHTL 361
A L
Sbjct: 361 AENL 364
>UNIPROTKB|I3LUT8 [details] [associations]
symbol:LOC100737500 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 GeneTree:ENSGT00530000062942
EMBL:CU928880 Ensembl:ENSSSCT00000029503 OMA:FRRSEAK Uniprot:I3LUT8
Length = 191
Score = 379 (138.5 bits), Expect = 8.4e-35, P = 8.4e-35
Identities = 77/172 (44%), Positives = 111/172 (64%)
Query: 8 SSGA-RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
S+G R++A +D+DCF+VQVEQR+ P L+ P AVVQY WKGGG+++V YEAR +GV +
Sbjct: 2 SNGQDRVVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTK 61
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
SM D+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE ++DL
Sbjct: 62 SMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAFVDL 121
Query: 127 TDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 176
T+A L + P S D + ++ GL + +G K T C C
Sbjct: 122 TNAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKGTSIASYCFC 173
>ASPGD|ASPL0000072145 [details] [associations]
symbol:AN4678 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0019985 "translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:BN001303
EMBL:AACD01000080 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 OrthoDB:EOG4M0J8V InterPro:IPR017061
PIRSF:PIRSF036603 RefSeq:XP_662282.1 ProteinModelPortal:Q5B452
STRING:Q5B452 EnsemblFungi:CADANIAT00005754 GeneID:2872476
KEGG:ani:AN4678.2 HOGENOM:HOG000173699 OMA:DDPDWDD Uniprot:Q5B452
Length = 674
Score = 303 (111.7 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 86/257 (33%), Positives = 125/257 (48%)
Query: 115 ERASIDEVYLDLTDAAEAMLAETPPESLDEV---DEEALKS--HILGLESKDGNDSKATV 169
E+AS+DEV++DL+ +L + PE ++ D AL LE D D +
Sbjct: 185 EKASVDEVFIDLSPLVFGVLLQRYPEMREKPHGDDRVALLPCPPTTALEW-DTEDCLVDL 243
Query: 170 KEWLCRCD-ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 228
E D D D + G IV +R V +TCSAGIA NKM+AKL S NKP
Sbjct: 244 DENETEVDDPDWDDVAMLIGAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPN 303
Query: 229 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 288
+QT V +++ L K++ LGGKLG + G + +LLK S ++ + +
Sbjct: 304 KQTVVRNRAIQNFLSGFKFTKIRMLGGKLGDQVTAMFGTEQISELLKVSLEQFRAKLNDD 363
Query: 289 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 348
T WL+ I RG EV R KS S KSF P ++ T+ WL+ ++ RL
Sbjct: 364 TAVWLYGIIRGEDKSEVNPRTQIKSMLSAKSFR-P-SINTLDQADKWLHIFAADIYGRLV 421
Query: 349 SD-LEQNKRIAHTLTLH 364
+ + ++KR T+ LH
Sbjct: 422 EEGVLEHKRRPKTIALH 438
Score = 141 (54.7 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 38/96 (39%), Positives = 50/96 (52%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
A P +S R+IAH+DLD FY Q E + R P AV Q++ LIA+ Y AR +G
Sbjct: 36 ASP-ASPLRVIAHIDLDAFYAQCEMVRLGTPRERPLAVQQWDS-----LIAINYPARKFG 89
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVAR-GKADLSSYR 98
+ R + EAK C I L V R G+ +YR
Sbjct: 90 ITRMISAKEAKAKCADIVLQHVATFREGEGGKWAYR 125
Score = 38 (18.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 465 DNFIDAAPLSPSGSESYSTLNS-TEL-QNELPGEQV-WIEHSMADLGQLEMKANT--WNG 519
D+ + P P+ + + T + +L +NE + W + +M ++ T WN
Sbjct: 218 DDRVALLPCPPTTALEWDTEDCLVDLDENETEVDDPDWDDVAMLIGAEIVRSVRTAVWNS 277
Query: 520 LDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNR 553
L +CS + G+ ++ Q +NR
Sbjct: 278 LSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRNR 311
>POMBASE|SPBC16A3.11 [details] [associations]
symbol:eso1 "sister chromatid cohesion protein/DNA
polymerase eta Eso1 fusion protein" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006473
"protein acetylation" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016407 "acetyltransferase activity"
evidence=ISS] [GO:0019985 "translesion synthesis" evidence=IMP]
[GO:0034087 "establishment of mitotic sister chromatid cohesion"
evidence=IMP] [GO:0034182 "regulation of maintenance of mitotic
sister chromatid cohesion" evidence=TAS] [GO:0043596 "nuclear
replication fork" evidence=IC] InterPro:IPR001126
InterPro:IPR015880 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00355
PomBase:SPBC16A3.11 GO:GO:0046872 GO:GO:0003684 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596
GO:GO:0016746 GO:GO:0034087 GO:GO:0006473 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03509 EMBL:AB039861 PIR:T39541 RefSeq:NP_596778.1
ProteinModelPortal:O42917 IntAct:O42917 STRING:O42917
EnsemblFungi:SPBC16A3.11.1 GeneID:2539666 KEGG:spo:SPBC16A3.11
OrthoDB:EOG4M0J8V NextBio:20800820 GO:GO:0034182 Uniprot:O42917
Length = 872
Score = 371 (135.7 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 112/374 (29%), Positives = 183/374 (48%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
A +S R++AH+D D FY QVE + +P AV Q W+G LIAV Y AR
Sbjct: 19 AGTQNSPLRVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQ---WQG--LIAVNYAARAAN 73
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVAR-GKAD---------------LSSYRNAGSEVVSI 107
+ R EAK+ CP++ V + G+++ L YR+ ++++I
Sbjct: 74 ISRHETVTEAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNI 133
Query: 108 LARKGRC-ERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEE-AL-KSHILGLESKDGN 163
+ + ++ASIDE +++LT D +L E P + D AL ++ +L ++ G
Sbjct: 134 IKKHAPVVKKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFGM 193
Query: 164 DSKATVKEWLCR-CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
+ V + + D D L IV E+R + + ++TCSAG++ N ML+KL S
Sbjct: 194 VIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVS 253
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282
NKP +QT + ++++ L SL I ++ LGGK G + N LG ++ D+ S D L
Sbjct: 254 SRNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLI 313
Query: 283 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
+ G G +WN+ GI E+ ++ KS S K+F + +K+ +W +
Sbjct: 314 DKLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASD 372
Query: 343 LSERLCSDLEQNKR 356
L R +LE +R
Sbjct: 373 LRSRFL-ELEGMRR 385
>UNIPROTKB|Q47155 [details] [associations]
symbol:dinB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0009432 "SOS response"
evidence=IEP;IDA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:U70214 GO:GO:0000731
GO:GO:0009432 GO:GO:0003887 EMBL:D38582 GO:GO:0019985 PDB:1OK7
PDB:1UNN PDBsum:1OK7 PDBsum:1UNN KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 EMBL:AF483080
EMBL:AF483081 EMBL:AF483082 EMBL:AF483083 EMBL:AF483084
EMBL:AF483085 EMBL:AF483086 EMBL:AF483087 EMBL:AF483088
EMBL:AF483089 EMBL:AF483090 EMBL:AF483091 EMBL:AF483092
EMBL:AF483093 EMBL:AF483094 EMBL:AF483095 EMBL:AF483096
EMBL:AF483097 EMBL:AF483098 EMBL:AF483099 EMBL:AF483100
EMBL:AF483101 EMBL:AF483102 EMBL:AF483103 EMBL:AF483104
EMBL:AF483105 PIR:H64747 RefSeq:NP_414766.1 RefSeq:YP_488526.1
ProteinModelPortal:Q47155 SMR:Q47155 IntAct:Q47155
EnsemblBacteria:EBESCT00000002588 EnsemblBacteria:EBESCT00000014477
GeneID:12932684 GeneID:944922 KEGG:ecj:Y75_p0222 KEGG:eco:b0231
PATRIC:32115577 EchoBASE:EB2935 EcoGene:EG13141 OMA:MNILNEY
ProtClustDB:PRK02406 BioCyc:EcoCyc:G6115-MONOMER
BioCyc:ECOL316407:JW0221-MONOMER BioCyc:MetaCyc:G6115-MONOMER
EvolutionaryTrace:Q47155 Genevestigator:Q47155 Uniprot:Q47155
Length = 351
Score = 202 (76.2 bits), Expect = 6.7e-29, Sum P(2) = 6.7e-29
Identities = 56/169 (33%), Positives = 85/169 (50%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGVG-KVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
L KS G ++ + HW CE + ERL +LE +R+A
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELE--RRLA 275
Score = 188 (71.2 bits), Expect = 6.7e-29, Sum P(2) = 6.7e-29
Identities = 45/119 (37%), Positives = 67/119 (56%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
A ++CP + L+ P G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLL--P---GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS 112
>UNIPROTKB|Q83EN5 [details] [associations]
symbol:dinP "DNA polymerase IV" species:227377 "Coxiella
burnetii RSA 493" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003887
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 198 (74.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 53/156 (33%), Positives = 77/156 (49%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
+PV S R I HVD+DCFYV +E R PKLR P AV +G + Y AR
Sbjct: 14 LPVRESTSKKLRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGV-ICTANYIAR 72
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASI 119
YGV+ ++ AK++CP L+ +PV ++ YR G ++ + E S+
Sbjct: 73 GYGVQSAISSSYAKKLCPS--LIILPV-----NMEKYRAIGHQIRGLFQEYTHLVEPLSL 125
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHIL 155
DE YLD++D + T E+ E+ +K H L
Sbjct: 126 DEAYLDVSDCKIHQGSAT--RIAQEIREQIVKRHSL 159
Score = 186 (70.5 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 49/157 (31%), Positives = 80/157 (50%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R Q++K T SAG+A NK+LAK+AS NKP + S + +LPI+K+
Sbjct: 145 IAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEKI 204
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K+ + + T DL S + L +S+G + G L+ + RGI V+ +
Sbjct: 205 HGVG-KITAQKMKAMNIHTCSDLQALSREALSKSFG-SFGVTLYELCRGIDPRSVEPNRI 262
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS +F + + T++ + L L +L +RL
Sbjct: 263 RKSVSVEHTFS--QDIATLSECEIELANLFNDLKQRL 297
>TIGR_CMR|CBU_0280 [details] [associations]
symbol:CBU_0280 "DNA-damage-inducible protein P"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 198 (74.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 53/156 (33%), Positives = 77/156 (49%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
+PV S R I HVD+DCFYV +E R PKLR P AV +G + Y AR
Sbjct: 14 LPVRESTSKKLRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGV-ICTANYIAR 72
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASI 119
YGV+ ++ AK++CP L+ +PV ++ YR G ++ + E S+
Sbjct: 73 GYGVQSAISSSYAKKLCPS--LIILPV-----NMEKYRAIGHQIRGLFQEYTHLVEPLSL 125
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHIL 155
DE YLD++D + T E+ E+ +K H L
Sbjct: 126 DEAYLDVSDCKIHQGSAT--RIAQEIREQIVKRHSL 159
Score = 186 (70.5 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 49/157 (31%), Positives = 80/157 (50%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R Q++K T SAG+A NK+LAK+AS NKP + S + +LPI+K+
Sbjct: 145 IAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEKI 204
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K+ + + T DL S + L +S+G + G L+ + RGI V+ +
Sbjct: 205 HGVG-KITAQKMKAMNIHTCSDLQALSREALSKSFG-SFGVTLYELCRGIDPRSVEPNRI 262
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS +F + + T++ + L L +L +RL
Sbjct: 263 RKSVSVEHTFS--QDIATLSECEIELANLFNDLKQRL 297
>UNIPROTKB|Q9UNA4 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005654 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AY094607 EMBL:AC093462
EMBL:AF140501 EMBL:AL136670 EMBL:BC032662 EMBL:AF245438
IPI:IPI00296840 RefSeq:NP_009126.2 UniGene:Hs.438533 PDB:1T3N
PDB:1ZET PDB:2ALZ PDB:2DPI PDB:2DPJ PDB:2FLL PDB:2FLN PDB:2FLP
PDB:2KHU PDB:2KHW PDB:2KTF PDB:2L0F PDB:2L0G PDB:3EPG PDB:3EPI
PDB:3G6V PDB:3G6X PDB:3G6Y PDB:3GV5 PDB:3GV7 PDB:3GV8 PDB:3H40
PDB:3H4B PDB:3H4D PDB:3NGD PDB:3OSN PDB:3Q8P PDB:3Q8Q PDB:3Q8R
PDB:3Q8S PDB:4EBC PDB:4EBD PDB:4EBE PDB:4EYH PDB:4EYI PDB:4FS1
PDB:4FS2 PDBsum:1T3N PDBsum:1ZET PDBsum:2ALZ PDBsum:2DPI
PDBsum:2DPJ PDBsum:2FLL PDBsum:2FLN PDBsum:2FLP PDBsum:2KHU
PDBsum:2KHW PDBsum:2KTF PDBsum:2L0F PDBsum:2L0G PDBsum:3EPG
PDBsum:3EPI PDBsum:3G6V PDBsum:3G6X PDBsum:3G6Y PDBsum:3GV5
PDBsum:3GV7 PDBsum:3GV8 PDBsum:3H40 PDBsum:3H4B PDBsum:3H4D
PDBsum:3NGD PDBsum:3OSN PDBsum:3Q8P PDBsum:3Q8Q PDBsum:3Q8R
PDBsum:3Q8S PDBsum:4EBC PDBsum:4EBD PDBsum:4EBE PDBsum:4EYH
PDBsum:4EYI PDBsum:4FS1 PDBsum:4FS2 ProteinModelPortal:Q9UNA4
SMR:Q9UNA4 IntAct:Q9UNA4 MINT:MINT-1189678 STRING:Q9UNA4
PhosphoSite:Q9UNA4 DMDM:59798440 PaxDb:Q9UNA4 PRIDE:Q9UNA4
DNASU:11201 Ensembl:ENST00000579534 GeneID:11201 KEGG:hsa:11201
UCSC:uc002lfj.4 CTD:11201 GeneCards:GC18P051731 H-InvDB:HIX0014457
HGNC:HGNC:9182 HPA:HPA012000 MIM:605252 neXtProt:NX_Q9UNA4
PharmGKB:PA33502 HOGENOM:HOG000234325 HOVERGEN:HBG053634
InParanoid:Q9UNA4 KO:K03510 OMA:VFYELPE OrthoDB:EOG46T310
ChEMBL:CHEMBL5391 ChiTaRS:POLI EvolutionaryTrace:Q9UNA4
GenomeRNAi:11201 NextBio:42637 Bgee:Q9UNA4 CleanEx:HS_POLI
Genevestigator:Q9UNA4 GermOnline:ENSG00000101751 Uniprot:Q9UNA4
Length = 740
Score = 208 (78.3 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 57/155 (36%), Positives = 83/155 (53%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ ++ YEAR GVK
Sbjct: 48 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ--KYL---VVTCNYEARKLGVK 101
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYL 124
+ M +AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++
Sbjct: 102 KLMNVRDAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFV 155
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLES 159
DLT+ E L + +S DE+ + H+ +S
Sbjct: 156 DLTEMVEKRLQQL--QS-DELSAVTVSGHVYNNQS 187
Score = 169 (64.5 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 55/180 (30%), Positives = 85/180 (47%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 198 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 257
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 258 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 316
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C D R HT+ L
Sbjct: 317 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRL 369
>ZFIN|ZDB-GENE-050417-376 [details] [associations]
symbol:poli "polymerase (DNA directed) iota"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 ZFIN:ZDB-GENE-050417-376
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CTD:11201 HOVERGEN:HBG053634 KO:K03510
EMBL:BC092781 IPI:IPI00481247 RefSeq:NP_001017834.1
UniGene:Dr.78857 ProteinModelPortal:Q568P0 SMR:Q568P0 GeneID:550532
KEGG:dre:550532 InParanoid:Q568P0 NextBio:20879773 Uniprot:Q568P0
Length = 710
Score = 191 (72.3 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 89/308 (28%), Positives = 131/308 (42%)
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PFSS 237
D + LA G +I E+R + T AG+A NK+LAKL SG KP QQTT+ P S+
Sbjct: 172 DEENIRLAVGSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSN 231
Query: 238 VKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+ L+ SL + K+ +G K L+ LG+ V DL + L + +G + N+
Sbjct: 232 AE-LMSSLTGLIKVPGIGYKTREKLK-ALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNL 289
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
A GI V P+S SF + + T+ V + +L L+ER+ D Q
Sbjct: 290 ACGIDDSPVTPAGPPQSLSDEDSF---KKMSTLEEVLKKIEELLINLTERMHKDGRQ--- 343
Query: 357 IAHTLTLHXXXXXXXXXXXXXXXXXXXCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVK 415
HTL L CP+ T KI + L + F K
Sbjct: 344 -PHTLRL--TIRKYTVTNRWFNRESRQCPIPNHTGLKITGGSSEAVPQLLSLSMKLFH-K 399
Query: 416 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSP 475
H + +T L+V S + S SI +F K ST+ Q+P +D+ L
Sbjct: 400 MVDPHQP-FHLTLLNVCFSNLQAKSSSKSSIASFFT--HKSPSTT-QIPSQQVDS-DLCE 454
Query: 476 SGSESYST 483
S + S+ T
Sbjct: 455 SVASSHFT 462
Score = 175 (66.7 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 47/134 (35%), Positives = 66/134 (49%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
R + R+I H DLDCFY QVE + P LR P + Q ++ Y AR GV
Sbjct: 30 RVSLTSQRVILHFDLDCFYAQVEMIRNPALRTKPLGIQQKYI-----IVTSNYVARELGV 84
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVY 123
+ M +A E CPQ+ LV +G+ DL+ YR +V +L ER DE +
Sbjct: 85 NKLMSVTDAVEKCPQLVLV-----KGE-DLTHYREMSYKVTELLMSYCPLVERLGFDENF 138
Query: 124 LDLTDAAEAMLAET 137
+D+T+ E + ET
Sbjct: 139 MDVTEMVEKRIKET 152
>UNIPROTKB|G5EH81 [details] [associations]
symbol:MGCH7_ch7g688 "Sister chromatid cohesion protein
Eso1" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 EMBL:CM000230 EMBL:CM001237
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 RefSeq:XP_003720794.1
EnsemblFungi:MGG_02924T0 GeneID:2682477 KEGG:mgr:MGG_02924
Uniprot:G5EH81
Length = 668
Score = 309 (113.8 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 91/290 (31%), Positives = 141/290 (48%)
Query: 87 VARGKADLSSYRNAGSEVVSILAR---KGRC--ERASIDEVYLDLTDAAEAMLAETPPES 141
+A K L YR +++++ +C E+ASIDEV++DL+ + L E PE
Sbjct: 136 IATDKVSLDPYRLQSRTILALIKECLPPHQCKVEKASIDEVFIDLSANVHSKLIERFPEL 195
Query: 142 LDE---VDEEALKSHILGLESKDGN-DSKATVKEWLCRCD-ADHRDKLLACGVLIVTELR 196
D +A + + + + D D+ + E D D D L I ++R
Sbjct: 196 ASPPPGADAQA-RLPLPPVSALDWQADALIELDETETETDDPDWDDIALLIASEITRDIR 254
Query: 197 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 256
+ ++TCSAG+A NK+L+KL S KP QQT + +V+ L K++ LGGK
Sbjct: 255 QTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGK 314
Query: 257 LGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNIARGISGEEVQARLLPKSHG 315
LG + G +V DLL+ D+L+ G +T W++N RGI EV +R KS
Sbjct: 315 LGDQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSML 374
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S KSF P ++ +V WL ++ RL + + +NKR T+ LH
Sbjct: 375 SAKSFR-P-SIHSVDQANKWLRIFSADIFSRLVEEGVLENKRRPKTMNLH 422
Score = 145 (56.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 43/148 (29%), Positives = 73/148 (49%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I+H+DLD FY Q E + P AV Q W+G LIAV Y AR +G+ R D
Sbjct: 48 RVISHIDLDAFYAQCEMVRLGVDEDRPLAVQQ---WQG--LIAVNYPARKFGISRHCAID 102
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A ++CP++++ V R + +YR G +I ++ S+D L +
Sbjct: 103 DALKLCPELQVQHVATWREGDNTWAYR--GDAAANIAT-----DKVSLDPYRLQ-SRTIL 154
Query: 132 AMLAETPPESLDEVDEEALKSHILGLES 159
A++ E P +V++ ++ + L +
Sbjct: 155 ALIKECLPPHQCKVEKASIDEVFIDLSA 182
>TAIR|locus:2156319 [details] [associations]
symbol:REV1 species:3702 "Arabidopsis thaliana"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0010224 "response to UV-B"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010224 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AB016874 EMBL:AC002342
EMBL:AB187523 EMBL:EF016093 EMBL:EF016094 EMBL:EF016095
EMBL:EF016096 EMBL:EF016097 EMBL:EF016098 EMBL:AY080825
IPI:IPI00517369 IPI:IPI00554422 IPI:IPI00837466 IPI:IPI00891315
RefSeq:NP_001119373.1 RefSeq:NP_199288.4 UniGene:At.30056
ProteinModelPortal:A3EWL3 SMR:A3EWL3 STRING:A3EWL3 PRIDE:A3EWL3
EnsemblPlants:AT5G44750.2 GeneID:834504 KEGG:ath:AT5G44750
TAIR:At5g44750 HOGENOM:HOG000246421 KO:K03515 OMA:TIPYDFD
PhylomeDB:A3EWL3 ProtClustDB:CLSN2681660 Genevestigator:A3EWL3
Uniprot:A3EWL3
Length = 1105
Score = 202 (76.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 53/161 (32%), Positives = 85/161 (52%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
++ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 310 LPKSHGSGKSFPGPR---ALKTVASVQHWLNQLCEELSERL 347
KS G+ ++ G R VQH+L LC+E+S RL
Sbjct: 611 ESKSIGAEVNW-GVRFRDQQDVFILVQHFLQCLCKEVSLRL 650
Score = 165 (63.1 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 48/129 (37%), Positives = 67/129 (51%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I H+DLDCF+V V + + +L P AV + KG I+ Y AR YGVK M
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D ++
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSD 487
Query: 132 A---MLAET 137
+LA T
Sbjct: 488 VETEVLAST 496
Score = 49 (22.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILG-LESKDGNDSKATVKEWLCR 175
+++TD + L++ L E+ EE L++ +LG S S + V + C+
Sbjct: 902 IEMTDLLPSSLSQVDVSVLQELPEE-LRADVLGAFPSHRRQQSSSDVPKETCK 953
>TIGR_CMR|CHY_1651 [details] [associations]
symbol:CHY_1651 "DNA polymerase IV - AMBIGUITY"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HOGENOM:HOG000082710 RefSeq:YP_360472.1
HSSP:P96022 ProteinModelPortal:Q3ABL2 STRING:Q3ABL2 GeneID:3726655
KEGG:chy:CHY_1651 PATRIC:21276423 OMA:GNREIFQ
ProtClustDB:CLSK2464724 BioCyc:CHYD246194:GJCN-1650-MONOMER
Uniprot:Q3ABL2
Length = 391
Score = 190 (71.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 50/139 (35%), Positives = 75/139 (53%)
Query: 177 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
D KL G I +++ ++ +ETE T S G+A NK LAKLAS +NKP V
Sbjct: 110 DVTGSQKLFGPGAEIGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVRED 169
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+V L LP++ + +G K+ L N++G+ TV D + E L++ +G G L+ +
Sbjct: 170 NVLDFLAPLPVEMLWGVGEKMKERL-NDMGIKTVQDFWELPEFFLRKKFGV-LGQNLYYL 227
Query: 297 ARGISGEEVQARLLPKSHG 315
+RGI EV +PKS G
Sbjct: 228 SRGIDFREVIPERVPKSLG 246
Score = 155 (59.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 41/117 (35%), Positives = 60/117 (51%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD+D F+ VEQR P+L+G P +V + G + A YEAR +GV+ +M
Sbjct: 4 RVIIHVDMDAFFAAVEQRDNPELKGKPV-IVGGVPGERGVVAAASYEARKFGVRSAMSLW 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA +CP + +P K Y+ ++ I E S+DE YLD+T
Sbjct: 63 EAARLCPHG--IFIPGNHKK-----YQEVSEKIFRIFREYTPLVEPVSLDEAYLDVT 112
>UNIPROTKB|Q8EHU9 [details] [associations]
symbol:dinB "DNA polymerase IV" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
ProtClustDB:PRK02406 RefSeq:NP_716739.1 HSSP:Q9UHC5
ProteinModelPortal:Q8EHU9 GeneID:1168948 KEGG:son:SO_1114
PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 181 (68.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DC++ VE R P+ RG P AV E + G + YEAR +GV+ +M
Sbjct: 2 RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRE-RRGVISTCNYEARRFGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTD 128
A+++CP +L+ VP G+ + Y++ S++ +I +R E S+DE YLD++D
Sbjct: 61 YAQKLCP--DLILVP---GRMQV--YKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSD 111
Score = 162 (62.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R +L ET T SAG+A K LAK+AS +NKP Q +P V + +L +++
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K+ + LG+ T GD+ + + +L +G G L A+GI +
Sbjct: 181 IPGVG-KVTAEKLSSLGLNTCGDVQTYPKQELITRFG-KFGAVLIERAQGIDDRGLSVSR 238
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G + + + T+ Q + L +ELS RL
Sbjct: 239 ERKSVGVETTLA--QDIYTLEQCQQVMPGLIQELSTRL 274
>TIGR_CMR|SO_1114 [details] [associations]
symbol:SO_1114 "DNA-damage-inducible protein P"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:NP_716739.1 HSSP:Q9UHC5 ProteinModelPortal:Q8EHU9
GeneID:1168948 KEGG:son:SO_1114 PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 181 (68.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DC++ VE R P+ RG P AV E + G + YEAR +GV+ +M
Sbjct: 2 RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRE-RRGVISTCNYEARRFGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTD 128
A+++CP +L+ VP G+ + Y++ S++ +I +R E S+DE YLD++D
Sbjct: 61 YAQKLCP--DLILVP---GRMQV--YKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSD 111
Score = 162 (62.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R +L ET T SAG+A K LAK+AS +NKP Q +P V + +L +++
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K+ + LG+ T GD+ + + +L +G G L A+GI +
Sbjct: 181 IPGVG-KVTAEKLSSLGLNTCGDVQTYPKQELITRFG-KFGAVLIERAQGIDDRGLSVSR 238
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G + + + T+ Q + L +ELS RL
Sbjct: 239 ERKSVGVETTLA--QDIYTLEQCQQVMPGLIQELSTRL 274
>UNIPROTKB|F1MHR0 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:DAAA02057088 IPI:IPI00687719
Ensembl:ENSBTAT00000012034 Uniprot:F1MHR0
Length = 701
Score = 178 (67.7 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 46/115 (40%), Positives = 64/115 (55%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ ++ YEAR GVK+
Sbjct: 36 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ--KYL---VVTCNYEARKLGVKKL 90
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEV 122
M +AKE CPQ+ LV G+ DL+ YR +V ++ + R E+ DE+
Sbjct: 91 MSVRDAKEKCPQLVLVN-----GE-DLTRYREMSYKVTEMVEK--RLEQLQSDEL 137
Score = 173 (66.0 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 181 RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
RD L L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S
Sbjct: 155 RDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPES 214
Query: 238 VKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+ L+ SL IK+M +G K L+ LG+++V DL F L++ G + + +
Sbjct: 215 SQELIHSLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKL 273
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
+ G V P+S SF + + + + +L L R+C D R
Sbjct: 274 SFGEDDSPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVCQD----GR 326
Query: 357 IAHTLTL 363
HT+ L
Sbjct: 327 KPHTIRL 333
>UNIPROTKB|Q81M86 [details] [associations]
symbol:dinB "DNA polymerase IV" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 197 (74.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD++CF+ VE L+G P AV + + G +I YEAR YG++ +M
Sbjct: 10 RVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLW 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 128
EAK +CPQ+ +V+ P + + YR A ++ IL+R + + SIDE YLD+TD
Sbjct: 70 EAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
Score = 143 (55.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I ++ +L E + CS GIA N LAK AS M KP T + + ++ LP+ M
Sbjct: 130 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLPVGAM 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K L N++ + T+ L K +E ++ G + G L A+G+ EV +
Sbjct: 190 HGIGEKTAEKL-NDIHIQTIEQLAKGNEHIIRAKIGKH-GVDLQRRAKGMDDREVDPSQM 247
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ G S + + + L +L + +S+RL
Sbjct: 248 GQHKSVGNSMTFSKDMDEEKELLDMLQRLSKSVSKRL 284
>TIGR_CMR|BA_4366 [details] [associations]
symbol:BA_4366 "DNA-damage-inducible protein P, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 197 (74.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD++CF+ VE L+G P AV + + G +I YEAR YG++ +M
Sbjct: 10 RVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLW 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 128
EAK +CPQ+ +V+ P + + YR A ++ IL+R + + SIDE YLD+TD
Sbjct: 70 EAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
Score = 143 (55.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I ++ +L E + CS GIA N LAK AS M KP T + + ++ LP+ M
Sbjct: 130 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLPVGAM 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K L N++ + T+ L K +E ++ G + G L A+G+ EV +
Sbjct: 190 HGIGEKTAEKL-NDIHIQTIEQLAKGNEHIIRAKIGKH-GVDLQRRAKGMDDREVDPSQM 247
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ G S + + + L +L + +S+RL
Sbjct: 248 GQHKSVGNSMTFSKDMDEEKELLDMLQRLSKSVSKRL 284
>UNIPROTKB|Q9KPS5 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT ProtClustDB:PRK02406
PIR:G82093 RefSeq:NP_231918.1 ProteinModelPortal:Q9KPS5
DNASU:2613209 GeneID:2613209 KEGG:vch:VC2287 PATRIC:20083613
Uniprot:Q9KPS5
Length = 360
Score = 168 (64.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 40/119 (33%), Positives = 68/119 (57%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P R + AV + + +G + Y+AR +GV+ +M
Sbjct: 6 RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGV-ISTCNYQARKFGVRSAMPTA 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+A ++CPQ+ +V P G+ +S Y++ ++ +I R E S+DE YLD++++
Sbjct: 65 QALKLCPQLHVV--P---GR--MSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSES 116
Score = 158 (60.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R + +E T SAG+A K LAK+AS +NKP V V+ ++DSLP++K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K+ ++ G+ D+ + KL +G G LW + GI EV
Sbjct: 185 IPGVG-KVALEKLHQAGLYVGADVRRADYRKLLHQFG-RLGASLWKKSHGIDEREVVTER 242
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQ-LCEELSERL 347
KS G +F + + T + Q L EL RL
Sbjct: 243 ERKSVGVEYTFS--QNISTFQECWQVIEQKLYPELDARL 279
Score = 37 (18.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 408 FLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNF 467
+ GS + Q W+ L+ SA + P+ + N PD +
Sbjct: 119 YQGSATLIAQAIRRDIWQELNLTASAG-VAPI-KFLAKVASDLNKPDGLYVVTPDKVQEM 176
Query: 468 IDAAPL 473
+D+ PL
Sbjct: 177 VDSLPL 182
>TIGR_CMR|VC_2287 [details] [associations]
symbol:VC_2287 "DNA-damage-inducible protein P" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT
ProtClustDB:PRK02406 PIR:G82093 RefSeq:NP_231918.1
ProteinModelPortal:Q9KPS5 DNASU:2613209 GeneID:2613209
KEGG:vch:VC2287 PATRIC:20083613 Uniprot:Q9KPS5
Length = 360
Score = 168 (64.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 40/119 (33%), Positives = 68/119 (57%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P R + AV + + +G + Y+AR +GV+ +M
Sbjct: 6 RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGV-ISTCNYQARKFGVRSAMPTA 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+A ++CPQ+ +V P G+ +S Y++ ++ +I R E S+DE YLD++++
Sbjct: 65 QALKLCPQLHVV--P---GR--MSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSES 116
Score = 158 (60.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R + +E T SAG+A K LAK+AS +NKP V V+ ++DSLP++K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K+ ++ G+ D+ + KL +G G LW + GI EV
Sbjct: 185 IPGVG-KVALEKLHQAGLYVGADVRRADYRKLLHQFG-RLGASLWKKSHGIDEREVVTER 242
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQ-LCEELSERL 347
KS G +F + + T + Q L EL RL
Sbjct: 243 ERKSVGVEYTFS--QNISTFQECWQVIEQKLYPELDARL 279
Score = 37 (18.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 408 FLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNF 467
+ GS + Q W+ L+ SA + P+ + N PD +
Sbjct: 119 YQGSATLIAQAIRRDIWQELNLTASAG-VAPI-KFLAKVASDLNKPDGLYVVTPDKVQEM 176
Query: 468 IDAAPL 473
+D+ PL
Sbjct: 177 VDSLPL 182
>UNIPROTKB|Q71Y46 [details] [associations]
symbol:dinB "DNA polymerase IV" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:YP_014591.1 ProteinModelPortal:Q71Y46 STRING:Q71Y46
GeneID:2798339 KEGG:lmf:LMOf2365_1998 PATRIC:20325291
Uniprot:Q71Y46
Length = 356
Score = 163 (62.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 40/128 (31%), Positives = 66/128 (51%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R I H+D+D FY VEQR P+ RG P ++ + K G + YEAR +GV +M
Sbjct: 4 SRKIIHIDMDAFYASVEQRDHPEFRGKPL-IIGGDPNKRGVVATCSYEARKFGVHSAMPT 62
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+A ++CP + +++ Y +++ I +R E S+DE YLD+T+
Sbjct: 63 RQAAKLCPNGIFIH-------GNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTEN 115
Query: 130 AEAMLAET 137
+ M + T
Sbjct: 116 KKGMKSAT 123
Score = 163 (62.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 52/182 (28%), Positives = 83/182 (45%)
Query: 177 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
D K + ++ E++ + +E T SAG++ NK +AK+AS KPA T V
Sbjct: 111 DVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPE 170
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE-DKLQESYGFNTGTWLWN 295
+ L+ +P+ K +G K+ + LG+ T DL K+SE D ++E + G L+
Sbjct: 171 EAEAFLEQIPVTKFYGVG-KVTAEKLHRLGIETGADLKKWSEWDLIRELH--KHGYHLYR 227
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
RG S V KS G +F L + Q L Q +++ ERL + K
Sbjct: 228 HVRGRSNNIVNPHRDRKSVGKETTFEF-NVLDSRVLEQS-LMQFAKKVEERLIKLQKHGK 285
Query: 356 RI 357
+
Sbjct: 286 TV 287
>UNIPROTKB|F1NCT8 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 IPI:IPI00680917
Ensembl:ENSGALT00000032847 ArrayExpress:F1NCT8 Uniprot:F1NCT8
Length = 862
Score = 289 (106.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 106/369 (28%), Positives = 167/369 (45%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAAEA 132
K++CP + +V P+ + YR EV ILA +DE YL++T+ E
Sbjct: 158 KKLCPHLTIV--PL-----NFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNVTEHLEE 210
Query: 133 MLAETPPESLDEV--DEEALKSHILGLESK--DGNDSKATVKE---WLCRCDADHRDKLL 185
L P + E + I+ S+ DG S + E + D+ RD+ L
Sbjct: 211 RL-NWPEDKRRYFLNTENTTEKRIVKKRSQVNDGYSSSPELFEDGTSVMDDDSGQRDQSL 269
Query: 186 ACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PF-S 236
V+ V E+R ++ ++T+ T SAGIA N MLAK+ S NKP Q + P
Sbjct: 270 KNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQ 329
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LW 294
+V + LPI+K+ +G K+ + LG+ T +L + + S F+ +W
Sbjct: 330 AVLDFIKDLPIRKVPGIG-KVTEKMLKALGIVTCSELY---QQRALLSLLFSEASWRSFL 385
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
+I+ G+ ++ G KS R ++ + + LC+EL L DL++
Sbjct: 386 DISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-LCQELCRELAQDLQKE 438
Query: 355 KRIAHTLTL 363
T+TL
Sbjct: 439 GLKGKTVTL 447
Score = 41 (19.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 537 SGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKD 577
+GT S+S +N N D + + + +E + L D
Sbjct: 680 AGTGQSASTSENSSGNSRDKKFTQIVSEKPHREKQPGDLID 720
>CGD|CAL0002818 [details] [associations]
symbol:RAD32 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 CGD:CAL0002818 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 EMBL:AACQ01000019 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 HOGENOM:HOG000065930 RefSeq:XP_720989.1
ProteinModelPortal:Q5AHD1 STRING:Q5AHD1 GeneID:3637340
KEGG:cal:CaO19.866 Uniprot:Q5AHD1
Length = 640
Score = 237 (88.5 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 82/296 (27%), Positives = 136/296 (45%)
Query: 87 VARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE----S 141
+ + K L YR +++ ++ + E+AS+DE Y+DL L + P+ S
Sbjct: 134 INKHKVSLDPYRRESRKILRVIGKSFDLTEKASVDECYIDLGREIYKRLIDLFPQLSRGS 193
Query: 142 LDEVDEE----ALKSHILGLESKDGNDSKATVKEWLCRCDA-------DHRDKLLACGVL 190
D + L L L K + T KE D D D G
Sbjct: 194 RDNPENSYANLPLIPPTLPLNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDICFIIGSQ 253
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I+ E+R + +E +T SAG+A K +AKLA+G KP QT + S++ L + + +
Sbjct: 254 ILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDV 313
Query: 251 KQLGGKLGTSLQNELGV----TTVGDLLK-FSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+GGKLG S+ N++ V ++ + + FS+ ++E G G ++NI RGI+ E+
Sbjct: 314 TGMGGKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIEL 373
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHT 360
Q+ + KS S K+F + + WL +L RL DL+ +N ++ T
Sbjct: 374 QSTIEVKSMTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLI-DLDSENMELSST 427
Score = 87 (35.7 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IA +DL+ F+ QVEQ + P Q+N +IAV Y +R +G+ R
Sbjct: 49 IALIDLNAFFAQVEQIRLNLTDQDPVVCAQWNS-----VIAVSYASRKFGITRMDTIASC 103
Query: 74 KEVCPQIELVQVPV 87
K CP + + V
Sbjct: 104 KSKCPNVIIAHAAV 117
>ASPGD|ASPL0000012133 [details] [associations]
symbol:AN3909 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017956 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 SMART:SM00384 InterPro:IPR001357 GO:GO:0000287
GO:GO:0003684 GO:GO:0006281 EMBL:BN001302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000064 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 InterPro:IPR025527 Pfam:PF14377 KO:K03515
OrthoDB:EOG49PF6V RefSeq:XP_661513.1 ProteinModelPortal:Q5B6C1
STRING:Q5B6C1 EnsemblFungi:CADANIAT00004788 GeneID:2873330
KEGG:ani:AN3909.2 HOGENOM:HOG000216225 OMA:SAEVNWG Uniprot:Q5B6C1
Length = 1139
Score = 185 (70.2 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 53/167 (31%), Positives = 84/167 (50%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +LR + +ET S GI N + AK+A KPA Q + +V + LP++ +
Sbjct: 477 VAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGELPVQNL 536
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L L+ +LGV V D+ S +KL S G TG L + ARGI EV +
Sbjct: 537 PGVGYSLSAKLE-DLGVKIVKDIRDLSREKLSSSLGPKTGAKLADYARGIDRTEVGNEVT 595
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS + ++ G R + T + ++ LCEEL RL +L + +++
Sbjct: 596 RKSVSAEVNW-GIRFV-TQDQAEDFMRSLCEELHRRLVENLMKGQQL 640
Score = 149 (57.5 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 41/120 (34%), Positives = 57/120 (47%)
Query: 10 GAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
GAR I HVD DCF+ V K P+L G P A+ + G + + Y AR GVK M
Sbjct: 337 GARRYIMHVDFDCFFAAVSTLKHPELEGKPVAIA-HGTGTGSEIASCNYVARASGVKNGM 395
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVV-SILARKGRCERASIDEVYLDLT 127
A + CP + ++ P D +Y A + +IL G + SIDE +D+T
Sbjct: 396 WMKGALQACPDLRVL--PY-----DFPAYEEASRKFYRAILGIDGLVQSVSIDEALVDIT 448
>UNIPROTKB|G3V8W7 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 EMBL:CH473955
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ UniGene:Rn.92419 Ensembl:ENSRNOT00000033952
Uniprot:G3V8W7
Length = 851
Score = 170 (64.9 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q VP S+V + LPI+
Sbjct: 292 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIR 351
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + ++A G+ ++
Sbjct: 352 KVSGIG-KVTEKMLLALGIVTCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL- 406
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
AR G KS R + + + LC+EL L DL++ T+T+
Sbjct: 407 AR-----DGERKSMSVERTFSEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 457
Score = 158 (60.7 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 45/115 (39%), Positives = 58/115 (50%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LATSNYHARRFGVRAAMPGFIA 156
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR EV ILA A S+DE YL++T
Sbjct: 157 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNIT 204
Score = 47 (21.6 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 27/123 (21%), Positives = 49/123 (39%)
Query: 458 STSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKAN-- 515
S E PD+ + PLSP+ +E+ STL+ + E V + + LE + +
Sbjct: 717 SEGEGYPDSQGKSCPLSPA-NETVSTLSREDSAQPCTDEVVTGRALVCPVCNLEQETSDL 775
Query: 516 TWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSAL 575
T + ++K + +S +S+ Q K R R++ K+ + K
Sbjct: 776 TLFNIHVDICLNKGIIQELRNSEV---NSVKQPKGSTRSTDRLQKASGKTKRAGRKTKGS 832
Query: 576 KDK 578
K
Sbjct: 833 TSK 835
>TIGR_CMR|CPS_1040 [details] [associations]
symbol:CPS_1040 "DNA polymerase IV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00278
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 RefSeq:YP_267789.1
HSSP:Q9UNA4 ProteinModelPortal:Q487H6 STRING:Q487H6 GeneID:3521759
KEGG:cps:CPS_1040 PATRIC:21465357 OMA:QSLGMRT
BioCyc:CPSY167879:GI48-1126-MONOMER Uniprot:Q487H6
Length = 352
Score = 177 (67.4 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R P+ + +P AV + L Y+AR +GV+ +M +A
Sbjct: 7 IIHIDMDCFYAAIEMRDFPEYQNIPLAVG--GDGPRSVLCTSNYQARQFGVRSAMPAIKA 64
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
K++CP +++V G+ D+ Y+ + I +R E S+DE YLD+TDA
Sbjct: 65 KQLCPHLKIVH-----GRMDV--YKETSKNIREIFSRYTDLIEPLSLDEAYLDVTDA 114
Score = 138 (53.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 39/124 (31%), Positives = 58/124 (46%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R + E T SAGIA NK LAK+AS NKP Q + V ++ L +KK
Sbjct: 123 LIAERIRADIFNELNLTASAGIAPNKFLAKIASDENKPNGQCVITPDKVANFVEQLSLKK 182
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L N G T D+ + + LQ G + L+ + G+ +++
Sbjct: 183 IPGIGPKTFEKL-NRHGYVTCADVRQSNIRALQNIVGKFANS-LYLKSHGVDNRDLEVSR 240
Query: 310 LPKS 313
KS
Sbjct: 241 QRKS 244
>MGI|MGI:1349767 [details] [associations]
symbol:Polk "polymerase (DNA directed), kappa" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=TAS] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 MGI:MGI:1349767 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
CleanEx:MM_POLK PDB:4FJO PDBsum:4FJO GeneTree:ENSGT00530000062942
HOGENOM:HOG000082711 KO:K03511 CTD:51426 HOVERGEN:HBG101212
OMA:TCTELYQ OrthoDB:EOG4Z8XVV EMBL:AB027563 EMBL:AF163571
EMBL:AB040765 EMBL:BC052820 IPI:IPI00131620 IPI:IPI00462547
RefSeq:NP_036178.1 UniGene:Mm.89926 PDB:2LSJ PDBsum:2LSJ
ProteinModelPortal:Q9QUG2 SMR:Q9QUG2 IntAct:Q9QUG2 STRING:Q9QUG2
PhosphoSite:Q9QUG2 PRIDE:Q9QUG2 Ensembl:ENSMUST00000022172
GeneID:27015 KEGG:mmu:27015 UCSC:uc007rne.1 InParanoid:Q9QUG2
NextBio:304949 Bgee:Q9QUG2 Genevestigator:Q9QUG2
GermOnline:ENSMUSG00000021668 Uniprot:Q9QUG2
Length = 852
Score = 170 (64.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 54/177 (30%), Positives = 89/177 (50%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P S+V + LPI+
Sbjct: 292 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIR 351
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + +IA G+ ++
Sbjct: 352 KVSGIG-KVTEKMLMALGIVTCTELY---QQRALLSLLFSETSWHYFLHIALGLGSTDL- 406
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
AR G KS R ++ + + LC+EL L DL++ T+T+
Sbjct: 407 AR-----DGERKSMSVERTFSEISKTEEQYS-LCQELCAELAHDLQKEGLKGRTVTI 457
Score = 159 (61.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 45/115 (39%), Positives = 58/115 (50%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LATSNYHARRFGVRAAMPGFIA 156
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR EV ILA A S+DE YL++T
Sbjct: 157 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNIT 204
>UNIPROTKB|F1NCT7 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
EMBL:AADN02067159 EMBL:AADN02067160 EMBL:AADN02067161
IPI:IPI00680100 Ensembl:ENSGALT00000032848 ArrayExpress:F1NCT7
Uniprot:F1NCT7
Length = 543
Score = 274 (101.5 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 107/374 (28%), Positives = 168/374 (44%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAAEA 132
K++CP + +V P+ + YR EV ILA +DE YL++T+ E
Sbjct: 158 KKLCPHLTIV--PL-----NFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNVTEHLEE 210
Query: 133 MLAETPPES----LD-EVDEEALKSHILGLESKD----GNDSKATVKE---WLCRCDADH 180
L P + L+ E E + E+K G S + E + D+
Sbjct: 211 RL-NWPEDKRRYFLNTENTTEKIYLQFTEYETKVMPKYGYSSSPELFEDGTSVMDDDSGQ 269
Query: 181 RDKLLACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
RD+ L V+ V E+R ++ ++T+ T SAGIA N MLAK+ S NKP Q +
Sbjct: 270 RDQSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRI 329
Query: 234 -PF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 291
P +V + LPI+K+ +G K+ + LG+ T +L + + S F+ +
Sbjct: 330 SPERQAVLDFIKDLPIRKVPGIG-KVTEKMLKALGIVTCSELY---QQRALLSLLFSEAS 385
Query: 292 W--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 349
W +I+ G+ ++ G KS R ++ + + LC+EL L
Sbjct: 386 WRSFLDISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-LCQELCRELAQ 438
Query: 350 DLEQNKRIAHTLTL 363
DL++ T+TL
Sbjct: 439 DLQKEGLKGKTVTL 452
Score = 38 (18.4 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 504 MADLGQLEMKANTWNGLDPSCSISKQ 529
M L + + W+GL S S SK+
Sbjct: 503 MDSLRKTSQRKAAWSGLTTSQSASKK 528
>UNIPROTKB|F1S2I2 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03511 CTD:51426 OMA:TCTELYQ EMBL:CU466449 RefSeq:XP_003123756.1
Ensembl:ENSSSCT00000015383 GeneID:100518650 KEGG:ssc:100518650
Uniprot:F1S2I2
Length = 878
Score = 168 (64.2 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 54/177 (30%), Positives = 86/177 (48%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPFSSV-KGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P V + LPI+
Sbjct: 300 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQVVMDFIKDLPIR 359
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T DL + + S F+ +W + +I+ G+
Sbjct: 360 KVSGIG-KVTEKMLKALGIITCTDLY---QQRALLSLLFSETSWHYFLHISLGLG----- 410
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ LP+ G KS R + + + LC+EL L DL++ T+TL
Sbjct: 411 STCLPRD-GERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKEGLKGRTVTL 465
Score = 162 (62.1 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 47/119 (39%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+LR P AV N L Y AR +GV+ +M G A
Sbjct: 110 IVHIDMDAFYAAVEMRDNPELRDKPIAVGSRNM-----LSTSNYHARKFGVRGAMPGFIA 164
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR SEV I A A S+DE YL++T E
Sbjct: 165 KRLCPQ--LIIVP-----PNFDKYRAVSSEVKEIFADYDPNFMALSLDEAYLNITKHLE 216
Score = 41 (19.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 472 PLSPSGSESYSTLNSTELQNELPGEQVWIEH 502
P + G ++ S +S E + LP + + +EH
Sbjct: 718 PSNAEGVDASSNKHSEEECSNLPSKSLHMEH 748
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 475 PSGSESYSTLNSTELQNELPGEQV 498
P Y L+N+ PG++V
Sbjct: 222 PEDKRKYFIKTGNSLENDKPGKEV 245
>UNIPROTKB|E2RAS5 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ EMBL:AAEX03002157 Ensembl:ENSCAFT00000014935
Uniprot:E2RAS5
Length = 871
Score = 171 (65.3 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 52/177 (29%), Positives = 84/177 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 301 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPNRQAVMDFIKDLPIR 360
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W +I+ G+
Sbjct: 361 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHHFLHISLGLGS---- 412
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
L G KS R ++ + N LC+EL L DL++ T+T+
Sbjct: 413 THLASSRDGERKSMSVERTFSEISKAEEQYN-LCQELCSELAQDLQKEGLKGRTVTI 468
Score = 153 (58.9 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 44/115 (38%), Positives = 59/115 (51%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 111 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYYARRFGVRAAMPGFIA 165
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR +EV ILA A S+DE YL++T
Sbjct: 166 KRLCPQ--LIIVP-----PNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNIT 213
Score = 44 (20.5 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 528 KQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSCP 583
K++ W H T ++D+ Q ++ + N + + S ++ +CP
Sbjct: 581 KRSERNWSHQDTFKCEAVDKQSLQTSHSFQVLKKKMNENLKTSENSN-NSQIFTCP 635
>UNIPROTKB|J9P5L3 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03511 CTD:51426
EMBL:AAEX03002157 RefSeq:XP_536321.2 Ensembl:ENSCAFT00000046862
GeneID:479180 KEGG:cfa:479180 Uniprot:J9P5L3
Length = 861
Score = 168 (64.2 bits), Expect = 9.7e-20, Sum P(3) = 9.7e-20
Identities = 53/177 (29%), Positives = 86/177 (48%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPNRQAVMDFIKDLPIR 352
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHHFLHISLGLGSTHL- 407
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
AR G KS R ++ + N LC+EL L DL++ T+T+
Sbjct: 408 AR-----DGERKSMSVERTFSEISKAEEQYN-LCQELCSELAQDLQKEGLKGRTVTI 458
Score = 153 (58.9 bits), Expect = 9.7e-20, Sum P(3) = 9.7e-20
Identities = 44/115 (38%), Positives = 59/115 (51%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYYARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR +EV ILA A S+DE YL++T
Sbjct: 158 KRLCPQ--LIIVP-----PNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNIT 205
Score = 44 (20.5 bits), Expect = 9.7e-20, Sum P(3) = 9.7e-20
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 528 KQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSCP 583
K++ W H T ++D+ Q ++ + N + + S ++ +CP
Sbjct: 571 KRSERNWSHQDTFKCEAVDKQSLQTSHSFQVLKKKMNENLKTSENSN-NSQIFTCP 625
>TAIR|locus:2031050 [details] [associations]
symbol:AT1G49980 species:3702 "Arabidopsis thaliana"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IDA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 EMBL:CP002684 GO:GO:0016020 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03511 OMA:VHVDCDA HOGENOM:HOG000082709 EMBL:AY508701
IPI:IPI00540157 RefSeq:NP_175420.3 UniGene:At.43723 HSSP:Q97W02
ProteinModelPortal:Q6JDV7 SMR:Q6JDV7 EnsemblPlants:AT1G49980.1
GeneID:841422 KEGG:ath:AT1G49980 TAIR:At1g49980 InParanoid:Q6JDV7
PhylomeDB:Q6JDV7 ProtClustDB:CLSN2681525 Genevestigator:Q6JDV7
Uniprot:Q6JDV7
Length = 671
Score = 168 (64.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 54/185 (29%), Positives = 92/185 (49%)
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSV 238
R++ L+ G I ELR V ET TCSAG+A N++LAK+ S +NKP Q + S+V
Sbjct: 211 RERGLSGGE-IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTV 269
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
+ LP++K+ +G L++ LG+ T ++++ L + ++ + ++
Sbjct: 270 MTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQ-KGSLLYALFSQSSADFFLSVGL 328
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G+ G P+ S KS R + ++L +EL+E L D+++ A
Sbjct: 329 GLGGTNT-----PQVR-SRKSISSERTFAATGDERLLYSKL-DELAEMLSHDMKKEGLTA 381
Query: 359 HTLTL 363
TLTL
Sbjct: 382 RTLTL 386
Score = 149 (57.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 44/123 (35%), Positives = 65/123 (52%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG---YEARNYGVKRS 67
+RI HVD+D FY VE P ++G P AV GGL + YEAR +GV+ +
Sbjct: 102 SRIWLHVDMDAFYAAVETLSDPSIKGKPMAV--------GGLSMISTANYEARKFGVRAA 153
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASIDEVYLD 125
M G A+++CP +L+ VPV D + Y + S++ + R S+DE YLD
Sbjct: 154 MPGFIARKLCP--DLIFVPV-----DFTKYTHY-SDLTRKVFRNYDPHFIAGSLDEAYLD 205
Query: 126 LTD 128
+T+
Sbjct: 206 ITE 208
>POMBASE|SPBC1347.01c [details] [associations]
symbol:rev1 "deoxycytidyl transferase Rev1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005819 "spindle" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=ISO] [GO:0043504
"mitochondrial DNA repair" evidence=IC] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISO] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 PomBase:SPBC1347.01c Pfam:PF00533 GO:GO:0005739
GO:GO:0005730 GO:GO:0005819 GO:GO:0000287 GO:GO:0003684
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 GO:GO:0043504
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
KO:K03515 RefSeq:NP_596693.2 ProteinModelPortal:O94623
IntAct:O94623 STRING:O94623 EnsemblFungi:SPBC1347.01c.1
GeneID:2539723 KEGG:spo:SPBC1347.01c OMA:FHIDFDC OrthoDB:EOG49PF6V
NextBio:20800875 Uniprot:O94623
Length = 935
Score = 162 (62.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 41/133 (30%), Positives = 62/133 (46%)
Query: 2 PVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARN 61
P+ + S +R + HVD DCF+ V R +LR P AV + K + + YEAR
Sbjct: 267 PIMKDKSKKSRFLLHVDFDCFFASVSTRFSHELRLKPVAVA--HGIKNSEIASCNYEARK 324
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASI 119
+G+K M AK +CP + +V D +Y + E +IL + SI
Sbjct: 325 FGIKNGMYVGTAKNLCPSLRVVDY-------DFGAYESVSREFYTILVNTLHDYIKVISI 377
Query: 120 DEVYLDLTDAAEA 132
DE LD+T + +
Sbjct: 378 DEALLDITSSVSS 390
Score = 159 (61.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R QV ++T S GI N +LA+LA KP ++ +V +L L ++ +
Sbjct: 397 IAESIRSQVREKTNCEVSVGIGPNVLLARLALRKAKPHNVYSLSIENVFDVLSPLSVQDL 456
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
+G L N GV T+G L + + LQE++G N G L+NI+RGI
Sbjct: 457 PGVGSSQAQKLFNLYGVRTIGQLQRIEKFNLQETFGVNYGLHLYNISRGI 506
>UNIPROTKB|D6RAE5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CH471084
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
HOGENOM:HOG000082711 UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424
IPI:IPI00966124 SMR:D6RAE5 Ensembl:ENST00000503479 Uniprot:D6RAE5
Length = 396
Score = 156 (60.0 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 37 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 91
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR EV ILA A S+DE YL++T E
Sbjct: 92 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLE 143
Score = 152 (58.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 227 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 286
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 287 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 342
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
G KS R + + + LC+EL L DL++ +
Sbjct: 343 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKER 384
>UNIPROTKB|Q5Q9G8 [details] [associations]
symbol:POLK "Polymerase kappa isoform 1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 UniGene:Hs.732105 HGNC:HGNC:9183
HOVERGEN:HBG101212 EMBL:AC026424 EMBL:AY769929 IPI:IPI01013677
SMR:Q5Q9G8 STRING:Q5Q9G8 Ensembl:ENST00000380481 Uniprot:Q5Q9G8
Length = 780
Score = 160 (61.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 203 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 262
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 263 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 318
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G KS R + + + LC+EL L DL++ + T+T+
Sbjct: 319 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKERLKGRTVTI 368
Score = 156 (60.0 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 13 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 67
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR EV ILA A S+DE YL++T E
Sbjct: 68 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLE 119
>POMBASE|SPCC553.07c [details] [associations]
symbol:kpa1 "DinB translesion DNA repair polymerase, pol
kappa" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISM]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0019985 "translesion synthesis" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 PomBase:SPCC553.07c
GO:GO:0005829 GO:GO:0007126 GO:GO:0000077 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0000790 GO:GO:0003887 GO:GO:0019985 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:Q9UHC5 KO:K03511
PIR:T41397 RefSeq:NP_587767.2 ProteinModelPortal:O74944
STRING:O74944 EnsemblFungi:SPCC553.07c.1 GeneID:2539547
KEGG:spo:SPCC553.07c OMA:VHVDCDA OrthoDB:EOG441TMM NextBio:20800707
Uniprot:O74944
Length = 547
Score = 171 (65.3 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 45/118 (38%), Positives = 66/118 (55%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
+II HVD D FY +E+ K PKL+ LP AV + L Y AR +GV+ +M
Sbjct: 130 QIIVHVDCDAFYASIEELKNPKLKSLPMAVGK------SVLCTANYVARKFGVRSAMPEF 183
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR--KGRCERASIDEVYLDLT 127
A+++CP +LV +P+ +LS Y E+ ++LA+ C ASIDE Y++LT
Sbjct: 184 IARKICP--DLVVIPL-----NLSEYAIKSKEIQNVLAQYDSNLCP-ASIDEFYMNLT 233
Score = 149 (57.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 45/137 (32%), Positives = 71/137 (51%)
Query: 145 VDEEALKSHILG--LESKDGNDSKATVKEWLCRCDADHRDKLLACGV----LIVTELRMQ 198
+ E A+KS + L D N A++ E+ + R + LA V ++V ++R Q
Sbjct: 199 LSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQ 258
Query: 199 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV--KGLLDSLPIKKMKQLGGK 256
V +ET T S GIA NK+LAK+AS KP Q +PF + ++ LP++++ +G
Sbjct: 259 VHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRV 318
Query: 257 LGTSLQNELGVTTVGDL 273
L L L + T GD+
Sbjct: 319 LEQQLLG-LEIKTCGDI 334
Score = 139 (54.0 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 40/114 (35%), Positives = 60/114 (52%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV--KGLLDSLPI 247
++V ++R QV +ET T S GIA NK+LAK+AS KP Q +PF + ++ LP+
Sbjct: 250 MVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMNDLPV 309
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGD------------LLKFSEDKLQESYGFNT 289
+++ +G L L L + T GD L K ++ L+ SYGF T
Sbjct: 310 REVSGIGRVLEQQLLG-LEIKTCGDIQRNLVILSYIFLPKSFQNLLRCSYGFGT 362
>UNIPROTKB|Q9UBT6 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IMP]
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 EMBL:CH471084 EMBL:AB036934
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 KO:K03511
EMBL:AB027564 EMBL:AF163570 EMBL:AF194973 EMBL:AF315602
EMBL:AF318313 EMBL:AK091659 EMBL:AK314610 EMBL:AY273797
EMBL:BC014955 EMBL:BC050718 EMBL:AB036935 IPI:IPI00033151
IPI:IPI00218100 IPI:IPI00552440 IPI:IPI00552703 RefSeq:NP_057302.1
UniGene:Hs.732105 PDB:1T94 PDB:2OH2 PDB:2W7O PDB:2W7P PDB:3IN5
PDB:3PZP PDBsum:1T94 PDBsum:2OH2 PDBsum:2W7O PDBsum:2W7P
PDBsum:3IN5 PDBsum:3PZP ProteinModelPortal:Q9UBT6 SMR:Q9UBT6
IntAct:Q9UBT6 STRING:Q9UBT6 PhosphoSite:Q9UBT6 DMDM:59798438
PaxDb:Q9UBT6 PRIDE:Q9UBT6 Ensembl:ENST00000241436
Ensembl:ENST00000352007 Ensembl:ENST00000508526
Ensembl:ENST00000510815 Ensembl:ENST00000515295 GeneID:51426
KEGG:hsa:51426 UCSC:uc003kdw.3 UCSC:uc003keb.3 UCSC:uc010izq.3
CTD:51426 GeneCards:GC05P074843 HGNC:HGNC:9183 MIM:605650
neXtProt:NX_Q9UBT6 PharmGKB:PA33503 HOVERGEN:HBG101212
InParanoid:Q9UBT6 OMA:TCTELYQ OrthoDB:EOG4Z8XVV BindingDB:Q9UBT6
ChEMBL:CHEMBL5365 EvolutionaryTrace:Q9UBT6 GenomeRNAi:51426
NextBio:54977 ArrayExpress:Q9UBT6 Bgee:Q9UBT6 Genevestigator:Q9UBT6
Uniprot:Q9UBT6
Length = 870
Score = 160 (61.4 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 408
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G KS R + + + LC+EL L DL++ + T+T+
Sbjct: 409 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKERLKGRTVTI 458
Score = 156 (60.0 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR EV ILA A S+DE YL++T E
Sbjct: 158 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLE 209
>UNIPROTKB|Q5Q9G5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 EMBL:AY769932
IPI:IPI00967663 SMR:Q5Q9G5 STRING:Q5Q9G5 Ensembl:ENST00000504026
UCSC:uc003kee.3 HOVERGEN:HBG056846 Uniprot:Q5Q9G5
Length = 461
Score = 156 (60.0 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR EV ILA A S+DE YL++T E
Sbjct: 158 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLE 209
Score = 152 (58.6 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 408
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
G KS R + + + LC+EL L DL++ +
Sbjct: 409 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKER 450
>FB|FBgn0037554 [details] [associations]
symbol:DNApol-iota "DNApol-iota" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE014297 GO:GO:0003684 GO:GO:0003887 GO:GO:0019985
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 KO:K03510 EMBL:AY051762 EMBL:AB049434
RefSeq:NP_649772.1 RefSeq:NP_731214.1 UniGene:Dm.9926 SMR:Q9VHV1
IntAct:Q9VHV1 MINT:MINT-308720 EnsemblMetazoa:FBtr0081797
EnsemblMetazoa:FBtr0081798 GeneID:40965 KEGG:dme:Dmel_CG7602
UCSC:CG7602-RA CTD:40965 FlyBase:FBgn0037554 InParanoid:Q9VHV1
OMA:CCAGIAY OrthoDB:EOG42RBPH GenomeRNAi:40965 NextBio:821498
Uniprot:Q9VHV1
Length = 737
Score = 173 (66.0 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 53/179 (29%), Positives = 89/179 (49%)
Query: 173 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
L CD +L A G I E+R ++ TC AGIA+NK+LAKL ++P QQT
Sbjct: 150 LSNCDCGCAQRL-AIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTV 208
Query: 233 VPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 291
+ + + + L +K++ +G K L E G+++V L + D +++ +GF T T
Sbjct: 209 LVSTYAEQFMRELGDLKRVTGIGQKTQCLLL-EAGMSSVEQLQQCDMDVMRKKFGFETAT 267
Query: 292 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
L ++A G V+ PK+ G + P +++T V+ L + L E++ D
Sbjct: 268 RLRDLAFGRDTSLVRPSGKPKTIGMEDACK-PISVRT--DVEERFRMLLKRLVEQVAED 323
Score = 140 (54.3 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 39/121 (32%), Positives = 58/121 (47%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR + Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ +CP + LV G+ DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLVN-----GE-DLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 131 E 131
E
Sbjct: 124 E 124
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 142 LDEVDEEALKSHILGLESKD 161
++E+ + L+S LG++ K+
Sbjct: 29 VEEIRDPTLRSKALGIQQKN 48
>UNIPROTKB|Q5Q9G7 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 HOVERGEN:HBG056846
EMBL:AY769930 IPI:IPI00965083 SMR:Q5Q9G7 STRING:Q5Q9G7
Ensembl:ENST00000509126 Uniprot:Q5Q9G7
Length = 489
Score = 156 (60.0 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR EV ILA A S+DE YL++T E
Sbjct: 158 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLE 209
Score = 152 (58.6 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 408
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
G KS R + + + LC+EL L DL++ +
Sbjct: 409 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKER 450
>UNIPROTKB|Q74H50 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 157 (60.3 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 51/154 (33%), Positives = 74/154 (48%)
Query: 196 RMQVLKETEF--TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
R++ L F TCS GIA NK+LAKLAS M KP T + V L++ +PI+ + +
Sbjct: 130 RIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRPEEVTRLMEIIPIQDLCGI 189
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV-QARLLPK 312
G K L N LG+ T G+L +F + L+ ++G G L + +GI V +
Sbjct: 190 GVKTRKQL-NSLGIQTCGELGRFPVEILRRTFGV-IGDRLHLMGKGIDDSPVVPVEEAEE 247
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 346
G S R L + +L QL E + R
Sbjct: 248 VKSVGHSMTLDRDLTARRDILKYLLQLSEMVGRR 281
Score = 148 (57.2 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 43/120 (35%), Positives = 58/120 (48%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRSM 68
R I H+D++ F+ VEQ+ P L+G P AVV G G V YEAR +GVK M
Sbjct: 9 RTILHIDMNAFFASVEQQANPSLQGKPIAVV------GSGRTVVTTASYEARAFGVKTGM 62
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA + CP + LV D Y + +++ I E SIDE +LD+T
Sbjct: 63 NKWEALQACPHLILVV-------GDNRKYTHTSTQINRIFRDFTPEVETFSIDEAFLDVT 115
>TIGR_CMR|GSU_0043 [details] [associations]
symbol:GSU_0043 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 157 (60.3 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 51/154 (33%), Positives = 74/154 (48%)
Query: 196 RMQVLKETEF--TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
R++ L F TCS GIA NK+LAKLAS M KP T + V L++ +PI+ + +
Sbjct: 130 RIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRPEEVTRLMEIIPIQDLCGI 189
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV-QARLLPK 312
G K L N LG+ T G+L +F + L+ ++G G L + +GI V +
Sbjct: 190 GVKTRKQL-NSLGIQTCGELGRFPVEILRRTFGV-IGDRLHLMGKGIDDSPVVPVEEAEE 247
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 346
G S R L + +L QL E + R
Sbjct: 248 VKSVGHSMTLDRDLTARRDILKYLLQLSEMVGRR 281
Score = 148 (57.2 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 43/120 (35%), Positives = 58/120 (48%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRSM 68
R I H+D++ F+ VEQ+ P L+G P AVV G G V YEAR +GVK M
Sbjct: 9 RTILHIDMNAFFASVEQQANPSLQGKPIAVV------GSGRTVVTTASYEARAFGVKTGM 62
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA + CP + LV D Y + +++ I E SIDE +LD+T
Sbjct: 63 NKWEALQACPHLILVV-------GDNRKYTHTSTQINRIFRDFTPEVETFSIDEAFLDVT 115
>UNIPROTKB|Q74CQ6 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 156 (60.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+I E++ ++ TCS GIA NK+LAKLAS M KP T +P +V L+ + PI+
Sbjct: 123 VIAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVASLMKTTPIRS 182
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+ +G L+ LG++T DL FS L +G G L + +GI V
Sbjct: 183 LCGIGPSTEQRLKY-LGISTCNDLGHFSSKILTRHFGA-MGARLKQMGQGIDDSPV 236
Score = 145 (56.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 42/122 (34%), Positives = 59/122 (48%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKR 66
S R I H+D++ F+ VEQ+ P L+G P AV+ G I YEAR +GV
Sbjct: 2 SNHRTILHLDMNAFFASVEQQADPSLQGKPVAVIG----SGARTIITTASYEARAHGVGT 57
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLD 125
M EAK +CP++ LV + + Y + +L + E SIDE +LD
Sbjct: 58 GMTTHEAKRLCPELILV---IGNNR----EYTRISKLIFEMLGQFTPLVEVFSIDEAFLD 110
Query: 126 LT 127
LT
Sbjct: 111 LT 112
>TIGR_CMR|GSU_1616 [details] [associations]
symbol:GSU_1616 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 156 (60.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+I E++ ++ TCS GIA NK+LAKLAS M KP T +P +V L+ + PI+
Sbjct: 123 VIAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVASLMKTTPIRS 182
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+ +G L+ LG++T DL FS L +G G L + +GI V
Sbjct: 183 LCGIGPSTEQRLKY-LGISTCNDLGHFSSKILTRHFGA-MGARLKQMGQGIDDSPV 236
Score = 145 (56.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 42/122 (34%), Positives = 59/122 (48%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKR 66
S R I H+D++ F+ VEQ+ P L+G P AV+ G I YEAR +GV
Sbjct: 2 SNHRTILHLDMNAFFASVEQQADPSLQGKPVAVIG----SGARTIITTASYEARAHGVGT 57
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLD 125
M EAK +CP++ LV + + Y + +L + E SIDE +LD
Sbjct: 58 GMTTHEAKRLCPELILV---IGNNR----EYTRISKLIFEMLGQFTPLVEVFSIDEAFLD 110
Query: 126 LT 127
LT
Sbjct: 111 LT 112
>UNIPROTKB|Q8AWW1 [details] [associations]
symbol:DINB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0019985 "translesion synthesis" evidence=TAS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005654 GO:GO:0003684 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0006297 GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 EMBL:AY118271 IPI:IPI00586140
RefSeq:NP_989514.1 UniGene:Gga.42393 SMR:Q8AWW1 STRING:Q8AWW1
Ensembl:ENSGALT00000024123 GeneID:374003 KEGG:gga:374003
InParanoid:Q8AWW1 NextBio:20813531 Uniprot:Q8AWW1
Length = 867
Score = 263 (97.6 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 102/372 (27%), Positives = 168/372 (45%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 104 IVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 158
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
K++CP + +V + + + + +E G +DE YL++T+ E
Sbjct: 159 KKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMG------LDEAYLNVTEHLEER 212
Query: 134 L--AETP------PESLDEVDEEALKSHILGLESKDGNDSKATVKE---WLCRCDADHRD 182
L E E+ E ++E + +I G + DG S + E + D+ RD
Sbjct: 213 LNWPEDKRRYFLNTENTTEKNKEDI--NIPGTVNIDGYSSSPELFEDGTSVMDDDSGQRD 270
Query: 183 KLLACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-P 234
+ L V+ V E+R ++ ++T+ T SAGIA N MLAK+ S NKP Q + P
Sbjct: 271 QSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISP 330
Query: 235 F-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW- 292
+V + LPI+K+ +G K+ + LG+ T +L + + S F+ +W
Sbjct: 331 ERQAVLDFIKDLPIRKVPGIG-KVTEKMLKALGIVTCSELY---QQRALLSLLFSEASWR 386
Query: 293 -LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 351
+I+ G+ ++ G KS R ++ + + LC+EL L DL
Sbjct: 387 SFLDISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-LCQELCRELAQDL 439
Query: 352 EQNKRIAHTLTL 363
++ T+TL
Sbjct: 440 QKEGLKGKTVTL 451
Score = 41 (19.5 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 537 SGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKD 577
+GT S+S +N N D + + + +E + L D
Sbjct: 683 AGTGQSASTSENSSGNSRDKKFTQIVSEKPHREKQPGDLID 723
>UNIPROTKB|A6QNV6 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ OrthoDB:EOG4Z8XVV
EMBL:DAAA02027742 EMBL:DAAA02027743 EMBL:BC149024 IPI:IPI00867010
RefSeq:NP_001095728.1 UniGene:Bt.38144 SMR:A6QNV6 STRING:A6QNV6
Ensembl:ENSBTAT00000005265 GeneID:541218 KEGG:bta:541218
InParanoid:A6QNV6 NextBio:20879073 Uniprot:A6QNV6
Length = 877
Score = 262 (97.3 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 107/381 (28%), Positives = 171/381 (44%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 110 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 164
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTD---- 128
K +CPQ L+ VP + Y+ EV IL A S+DE YL++T
Sbjct: 165 KRLCPQ--LIIVP-----PNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNITKHLEE 217
Query: 129 --------------AAEAMLAETPPESLDEVDE-EALKSHILGLES-----KDGNDSKAT 168
A ++ + P + ++E+ E E S +L +S GN S+
Sbjct: 218 RKNWPEDKRKYFITAGNSLENDKPGKEVNELSEHEGSISPLLFEDSPPDLQSPGNPSQVN 277
Query: 169 VKEWLCRCDADHRDKLL--ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 226
+E H++ ++ +V E+R ++ ++T T SAGIA N MLAK+ S NK
Sbjct: 278 FEE--PNNPQIHQNSIVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNK 335
Query: 227 P-AQQTTVPF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 284
P Q +P +V + LPI+K+ +G K+ + LG+ T +L + + S
Sbjct: 336 PNGQYQILPNRQAVMDFIKDLPIRKVSGIG-KVTEKMLKALGIITCTELY---QQRALLS 391
Query: 285 YGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
F+ +W +I+ G+ + AR G KS R ++ + + LC+E
Sbjct: 392 LLFSETSWHHFLHISLGLGSTHL-AR-----DGERKSMSVERTFSEISKAEEQYS-LCQE 444
Query: 343 LSERLCSDLEQNKRIAHTLTL 363
L L DL++ T+T+
Sbjct: 445 LCSELAQDLQKKGLKGRTVTI 465
Score = 42 (19.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 474 SPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLD-PSCSISKQTSG 532
SP + + T+N LQ QV + M++ + E K+++ P C +Q S
Sbjct: 585 SPQDTFTCETVNKQSLQTS-QSFQV-LNKKMSENLETEEKSHSCQTFTCPVC-FREQGSV 641
Query: 533 QWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSC 582
+ LD P +S+M S S+ + ++K + D V C
Sbjct: 642 SLEAFNKHVDACLDG--PSISGNSKMSSCSHASSTEVNEKENVCDSVSLC 689
>UNIPROTKB|P63987 [details] [associations]
symbol:dinB2 "DNA polymerase IV 2" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842581 GO:GO:0003887 eggNOG:COG0389
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 PIR:A70649 RefSeq:NP_217572.1 RefSeq:NP_337660.1
RefSeq:YP_006516517.1 ProteinModelPortal:P63987 SMR:P63987
EnsemblBacteria:EBMYCT00000003933 EnsemblBacteria:EBMYCT00000069414
GeneID:13317860 GeneID:887519 GeneID:923303 KEGG:mtc:MT3142
KEGG:mtu:Rv3056 KEGG:mtv:RVBD_3056 PATRIC:18128668
TubercuList:Rv3056 OMA:IIAHIDI ProtClustDB:PRK03352 Uniprot:P63987
Length = 346
Score = 157 (60.3 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E+R +L +T +CS GI+ NK AK+A+G+ KPA + ++ ++ ++ +
Sbjct: 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL- 309
+G K L +LG+ TV L L ++G T WL +A+G EV A+
Sbjct: 188 WGVGPKTTKRLA-KLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+P+S +FP R L + ++ + +L + + + R+A T+
Sbjct: 246 VPRSRSHAVTFP--RDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTV 295
Score = 127 (49.8 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 59/176 (33%), Positives = 77/176 (43%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV--GYE 58
MP A P R I HVDLD F VE + P+L GLP V + + YE
Sbjct: 1 MPTAAP-----RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYE 55
Query: 59 ARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERA 117
AR YGV+ M A CP E +P ++ ++Y A EVV++L G E
Sbjct: 56 ARAYGVRAGMPLRTAARRCP--EATFLP-----SNPAAYNAASEEVVALLRDLGYPVEVW 108
Query: 118 SIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHI--LGLESKDG-NDSKATVK 170
DE YL A+ TP + + EV EE K + GL G +D+K K
Sbjct: 109 GWDEAYL-------AVAPGTPDDPI-EVAEEIRKVILSQTGLSCSIGISDNKQRAK 156
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 157 LESKDGNDSKATVKEWL--CRCDADHRDKLLACGVLI---VTELRMQVLKE 202
L +K G D++ + + W+ R A + L C + VTEL + L E
Sbjct: 230 LLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNE 280
>UNIPROTKB|E9PST4 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 RGD:620058 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 IPI:IPI00777177
Ensembl:ENSRNOT00000061462 ArrayExpress:E9PST4 Uniprot:E9PST4
Length = 771
Score = 158 (60.7 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
Identities = 45/115 (39%), Positives = 58/115 (50%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LATSNYHARRFGVRAAMPGFIA 156
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR EV ILA A S+DE YL++T
Sbjct: 157 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNIT 204
Score = 132 (51.5 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
Identities = 47/158 (29%), Positives = 75/158 (47%)
Query: 210 GIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 267
GIA N MLAK+ S NKP Q VP S+V + LPI+K+ +G K+ + LG+
Sbjct: 231 GIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSGIG-KVTEKMLLALGI 289
Query: 268 TTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRA 325
T +L + + S F+ +W + ++A G+ ++ AR G KS R
Sbjct: 290 VTCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL-AR-----DGERKSMSVERT 340
Query: 326 LKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ + + LC+EL L DL++ T+T+
Sbjct: 341 FSEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 377
Score = 47 (21.6 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
Identities = 27/123 (21%), Positives = 49/123 (39%)
Query: 458 STSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKAN-- 515
S E PD+ + PLSP+ +E+ STL+ + E V + + LE + +
Sbjct: 637 SEGEGYPDSQGKSCPLSPA-NETVSTLSREDSAQPCTDEVVTGRALVCPVCNLEQETSDL 695
Query: 516 TWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSAL 575
T + ++K + +S +S+ Q K R R++ K+ + K
Sbjct: 696 TLFNIHVDICLNKGIIQELRNSEV---NSVKQPKGSTRSTDRLQKASGKTKRAGRKTKGS 752
Query: 576 KDK 578
K
Sbjct: 753 TSK 755
>UNIPROTKB|D6R9M8 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:AC010245 EMBL:AC116341 GO:GO:0003887
InterPro:IPR024728 Pfam:PF11798 HOGENOM:HOG000082711 HGNC:HGNC:9183
EMBL:AC026424 IPI:IPI00967979 ProteinModelPortal:D6R9M8 SMR:D6R9M8
Ensembl:ENST00000514141 UCSC:uc003kea.3 ArrayExpress:D6R9M8
Bgee:D6R9M8 Uniprot:D6R9M8
Length = 427
Score = 156 (60.0 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
K +CPQ L+ VP + YR EV ILA A S+DE YL++T E
Sbjct: 158 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLE 209
Score = 129 (50.5 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDL 273
K+ +G K+ + LG+ T +L
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTEL 376
>UNIPROTKB|J3KTN3 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000583136 Uniprot:J3KTN3
Length = 222
Score = 138 (53.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 38/94 (40%), Positives = 53/94 (56%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 130 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 189
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
L IK++ +G K L+ LG+ +V DL FS
Sbjct: 190 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFS 222
Score = 130 (50.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 42/129 (32%), Positives = 64/129 (49%)
Query: 32 PKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGK 91
P+L+ P V Q ++ ++ YEAR GVK+ M +AKE CPQ+ LV G+
Sbjct: 5 PELKDKPLGVQQ--KYL---VVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN-----GE 54
Query: 92 ADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEAL 150
DL+ YR +V +L ER DE ++DLT+ E L + +S DE+ +
Sbjct: 55 -DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQL--QS-DELSAVTV 110
Query: 151 KSHILGLES 159
H+ +S
Sbjct: 111 SGHVYNNQS 119
>UNIPROTKB|E9PST3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00777918 Ensembl:ENSRNOT00000061463
ArrayExpress:E9PST3 Uniprot:E9PST3
Length = 793
Score = 158 (60.7 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 45/115 (39%), Positives = 58/115 (50%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LATSNYHARRFGVRAAMPGFIA 156
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR EV ILA A S+DE YL++T
Sbjct: 157 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNIT 204
Score = 126 (49.4 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 46/157 (29%), Positives = 74/157 (47%)
Query: 211 IAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVT 268
IA N MLAK+ S NKP Q VP S+V + LPI+K+ +G K+ + LG+
Sbjct: 254 IAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSGIG-KVTEKMLLALGIV 312
Query: 269 TVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRAL 326
T +L + + S F+ +W + ++A G+ ++ AR G KS R
Sbjct: 313 TCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL-AR-----DGERKSMSVERTF 363
Query: 327 KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ + + LC+EL L DL++ T+T+
Sbjct: 364 SEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 399
Score = 47 (21.6 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 27/123 (21%), Positives = 49/123 (39%)
Query: 458 STSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKAN-- 515
S E PD+ + PLSP+ +E+ STL+ + E V + + LE + +
Sbjct: 659 SEGEGYPDSQGKSCPLSPA-NETVSTLSREDSAQPCTDEVVTGRALVCPVCNLEQETSDL 717
Query: 516 TWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSAL 575
T + ++K + +S +S+ Q K R R++ K+ + K
Sbjct: 718 TLFNIHVDICLNKGIIQELRNSEV---NSVKQPKGSTRSTDRLQKASGKTKRAGRKTKGS 774
Query: 576 KDK 578
K
Sbjct: 775 TSK 777
>UNIPROTKB|E2RPL9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 KO:K03515 CTD:51455
OMA:YRFCRGL EMBL:AAEX03007444 RefSeq:XP_538458.3
Ensembl:ENSCAFT00000003562 GeneID:481337 KEGG:cfa:481337
Uniprot:E2RPL9
Length = 1253
Score = 145 (56.1 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 45/163 (27%), Positives = 77/163 (47%)
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
+R ++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 594 VRTEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVG 653
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
+ + L N LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 654 RSMESKL-NSLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSI 712
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
+ ++ G R + + LN L EE+ RL + + KR+
Sbjct: 713 SAEINY-GIRFTQPKEAEAFLLN-LSEEIQRRLEAAHVKGKRL 753
Score = 97 (39.2 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 31/99 (31%), Positives = 46/99 (46%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR- 110
+ + YEAR G+K M +AK++CP ++ V P D +Y+ + LA
Sbjct: 508 IASCSYEARQVGIKNGMFFGQAKQLCPNLQAV--PY-----DFHAYKEVARTMYETLASY 560
Query: 111 KGRCERASIDEVYLDLTDA-AEAMLAETPPESLDEVDEE 148
E S DE +D+T+ AE L TP E + V E
Sbjct: 561 THNIEAVSCDEALVDITEILAETRL--TPDEFANAVRTE 597
Score = 87 (35.7 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAV 41
I HVD+DCF+V V R +P L+G P AV
Sbjct: 419 IMHVDMDCFFVSVGIRNRPDLKGKPVAV 446
Score = 51 (23.0 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 31/142 (21%), Positives = 52/142 (36%)
Query: 442 GTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIE 501
G+ S++ F ST E+ + F+ A L S + T LP +
Sbjct: 848 GSHSVLDLFQVQKAKKSTEEEHKEVFLAAMDLEISSASRNCTF--------LPSFSTHLT 899
Query: 502 HSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRD-DSRMRS 560
S++ + + WNGL S+ + + S S LDQ+ + D R +
Sbjct: 900 SSVSPVTSKAESSGKWNGLHSPISLKSRIN---LSIEVPSPSQLDQSVLEALPPDLREQV 956
Query: 561 VPIKSNQQEHKKSALKDKVHSC 582
+ Q E K+ V+ C
Sbjct: 957 EQVCVQQGELHGDKRKEPVNGC 978
>ASPGD|ASPL0000030996 [details] [associations]
symbol:AN5620 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00278 GO:GO:0003684 GO:GO:0006281
EMBL:AACD01000098 EMBL:BN001305 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 KO:K03510 RefSeq:XP_663224.1
EnsemblFungi:CADANIAT00003450 GeneID:2871907 KEGG:ani:AN5620.2
HOGENOM:HOG000191154 OMA:EAKQICP OrthoDB:EOG41CB4X Uniprot:Q5B1G0
Length = 573
Score = 227 (85.0 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 84/278 (30%), Positives = 127/278 (45%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
A P + RII H D DCFY V + +QP L+ LP AV Q ++ YEAR G
Sbjct: 3 AVPLRNDERIILHFDYDCFYASVFEAEQPILKTLPLAVQQKQI-----VVTCNYEARRRG 57
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--G-RCERASID 120
+++ EAK++CP + ++ G+ DL+ +R+A ++ R G R ER D
Sbjct: 58 LRKLQLIKEAKQICPDVVIIL-----GE-DLTKFRDASKDLYLFFRRSIWGERVERLGFD 111
Query: 121 EVYLDLTDAAEAMLAETPPESLDE----VDE-EALKSHILGLESKDGND--SKATVKEWL 173
E+++D+TD P L +D + + G + + K L
Sbjct: 112 EIFMDVTDMITYNAGLLNPNDLTHSFFHLDSRDPTVGFAFDATAVYGRTYPNDRSGKP-L 170
Query: 174 CRCDAD-HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
D H LLA LR Q+ + +T +AGI+ +K+LAK+ +KP QTT
Sbjct: 171 SEADTQLHLRLLLASH--FAGYLRSQLENQKGYTATAGISTSKLLAKVVGSAHKPNNQTT 228
Query: 233 V--PFSS-------VKGLLDSLPIKKMKQLGGKLGTSL 261
+ P+SS V LDS I+ + +G KL L
Sbjct: 229 LLPPYSSTGDCESNVLRFLDSREIRAIPGIGSKLSRKL 266
Score = 50 (22.7 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 290 GTWLWNIARGISGEEV-QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 348
G +W + G+ G +V +AR P S+ G L T +V+ + L L R+
Sbjct: 312 GVKIWGLLHGVDGTQVGEARDTPTQISIENSY-GH--LDTFEAVRKEMLSLAASLIRRMR 368
Query: 349 SDLEQ 353
DL +
Sbjct: 369 MDLTE 373
>FB|FBgn0035150 [details] [associations]
symbol:Rev1 "Rev1" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0017125 "deoxycytidyl
transferase activity" evidence=ISS;NAS] [GO:0019985 "translesion
synthesis" evidence=NAS] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 EMBL:AE014296 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0010569 GO:GO:0003887 GO:GO:0019985 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GO:GO:0017125 GeneTree:ENSGT00530000062942
KO:K03515 OMA:TIPYDFD CTD:51455 FlyBase:FBgn0035150 EMBL:AB049435
RefSeq:NP_612047.1 UniGene:Dm.2203 SMR:Q9W0P2 IntAct:Q9W0P2
STRING:Q9W0P2 EnsemblMetazoa:FBtr0072557 GeneID:38079
KEGG:dme:Dmel_CG12189 UCSC:CG12189-RA InParanoid:Q9W0P2
GenomeRNAi:38079 NextBio:806885 Uniprot:Q9W0P2
Length = 995
Score = 147 (56.8 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 44/157 (28%), Positives = 81/157 (51%)
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS-VKGLLDSLPIKKM 250
V+ LR +V +T CSAG+A NK+LA++A+ KP Q + S+ + + + + +
Sbjct: 442 VSHLRQEVYSKTGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLL 501
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + L+ + G+ GD+ + +K+++ G G L+ RGI + +
Sbjct: 502 PGVGSSISHKLK-QAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQI 560
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
K+ + +F G R +V Q +L QL EE+++RL
Sbjct: 561 RKTVSAEMNF-GIRFTNSVECEQ-FLCQLSEEVTKRL 595
Score = 101 (40.6 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG 50
R + H+D+DCF+V V R +P+LRGLP AV KGG
Sbjct: 273 RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHS---KGG 308
Score = 85 (35.0 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK 111
+ + YEAR G++ M +A ++CP EL +P D Y+ + +A+
Sbjct: 359 IASCSYEAREKGIRNGMFVGQALKLCP--ELKTIPY-----DFEGYKEVAFTLYDTVAQY 411
Query: 112 G-RCERASIDEVYLDLTDAAEAM 133
E S DE++++LTD A +
Sbjct: 412 TLNIEAVSCDEMFVELTDLAHEL 434
>UNIPROTKB|F1P5H4 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0009411
"response to UV" evidence=IEA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IEA] [GO:0042276 "error-prone
translesion synthesis" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:AADN02017696 EMBL:AADN02017697 IPI:IPI01017381
Ensembl:ENSGALT00000027069 Uniprot:F1P5H4
Length = 1255
Score = 140 (54.3 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +R ++ +T+ T S G+ N +LA++A+ KP Q + V + + +
Sbjct: 601 LANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNL 660
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + L + LG+ T GDL S KLQ+ +G TG L+ RG+ V+
Sbjct: 661 PGVGRSMESKLAS-LGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKE 719
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS + ++ G R + + +L L EE+ RL + + KR+
Sbjct: 720 RKSVSAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEAAGMKGKRL 764
Score = 104 (41.7 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 30/99 (30%), Positives = 47/99 (47%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR- 110
+ + YEAR G+K M +AK++CP ++ V D ++Y+ V ILA
Sbjct: 519 IASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSY-------DFNAYKEVAQTVYEILASY 571
Query: 111 KGRCERASIDEVYLDLTDA-AEAMLAETPPESLDEVDEE 148
E S DE +D+T+ E L TP E + + +E
Sbjct: 572 THNIEAVSCDEALVDITEILTETRL--TPDELANAIRDE 608
Score = 89 (36.4 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAV 41
A+P S I HVD+DCF+V V R +P L+G P AV
Sbjct: 417 AKPQSC----IMHVDMDCFFVSVAIRNRPDLKGKPVAV 450
>UNIPROTKB|Q4KWZ7 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0019985
"translesion synthesis" evidence=TAS] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0002206 "gene conversion of
immunoglobulin genes" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005654 GO:GO:0000287
GO:GO:0003684 GO:GO:0006260 GO:GO:0006302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03515 EMBL:AY675169 IPI:IPI00571721 RefSeq:NP_001025982.2
UniGene:Gga.24037 ProteinModelPortal:Q4KWZ7 SMR:Q4KWZ7
STRING:Q4KWZ7 GeneID:418703 KEGG:gga:418703 CTD:51455
HOGENOM:HOG000154094 HOVERGEN:HBG054140 InParanoid:Q4KWZ7
OrthoDB:EOG4GF3DF NextBio:20821851 GO:GO:0002206 Uniprot:Q4KWZ7
Length = 1255
Score = 140 (54.3 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +R ++ +T+ T S G+ N +LA++A+ KP Q + V + + +
Sbjct: 601 LANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNL 660
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + L + LG+ T GDL S KLQ+ +G TG L+ RG+ V+
Sbjct: 661 PGVGRSMESKLAS-LGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKE 719
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS + ++ G R + + +L L EE+ RL + + KR+
Sbjct: 720 RKSVSAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEAAGMKGKRL 764
Score = 104 (41.7 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 30/99 (30%), Positives = 47/99 (47%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR- 110
+ + YEAR G+K M +AK++CP ++ V D ++Y+ V ILA
Sbjct: 519 IASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSY-------DFNAYKEVAQTVYEILASY 571
Query: 111 KGRCERASIDEVYLDLTDA-AEAMLAETPPESLDEVDEE 148
E S DE +D+T+ E L TP E + + +E
Sbjct: 572 THNIEAVSCDEALVDITEILTETRL--TPDELANAIRDE 608
Score = 89 (36.4 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAV 41
A+P S I HVD+DCF+V V R +P L+G P AV
Sbjct: 417 AKPQSC----IMHVDMDCFFVSVAIRNRPDLKGKPVAV 450
>UNIPROTKB|J3KQ09 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KQ09 Ensembl:ENST00000406285
Uniprot:J3KQ09
Length = 661
Score = 206 (77.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 54/141 (38%), Positives = 76/141 (53%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ ++ YEAR GVK
Sbjct: 48 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ--KYL---VVTCNYEARKLGVK 101
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYL 124
+ M +AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++
Sbjct: 102 KLMNVRDAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFV 155
Query: 125 DLTDAAEAMLAETPPESLDEV 145
DLT+ E L + + L V
Sbjct: 156 DLTEMVEKRLQQLQSDELSAV 176
Score = 67 (28.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 27/111 (24%), Positives = 46/111 (41%)
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+G K L+ LG+ +V DL FS L++ G + + ++ G V P+
Sbjct: 188 IGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQ 246
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
S SF + + ++ + +L L R+C D R HT+ L
Sbjct: 247 SFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRL 290
Score = 39 (18.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL--LKFSED 279
L++L I ++ L L+ ELG++ + L F ED
Sbjct: 196 LEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGED 235
>UNIPROTKB|Q3ZAI3 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HSSP:P96022 RefSeq:YP_180766.1
ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3 GeneID:3229123
KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL ProtClustDB:CLSK836830
BioCyc:DETH243164:GJNF-11-MONOMER Uniprot:Q3ZAI3
Length = 390
Score = 147 (56.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 41/117 (35%), Positives = 59/117 (50%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R + HVDLD F+V VEQ +P+L+ P V E + G + A YEAR +G+ M
Sbjct: 4 RRVMHVDLDAFFVSVEQSLRPELKSKPVIVGGKPE-RRGVVAAASYEARKFGIHSGMPLL 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
AK +CPQ ++ G L YR + + IL+ E +DE YL++T
Sbjct: 63 SAKHLCPQAVFIE-----GNHRL--YREYSEKFMQILSDFSPFLEPMGLDEAYLEVT 112
Score = 121 (47.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 45/170 (26%), Positives = 73/170 (42%)
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
++R ++ E S GIA++K++AK+A+ KP Q VP L L I M +
Sbjct: 127 KIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPAGEEAAFLAPLDISIMPGI 186
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
G K L++ LG+ T+G L L+ G +L N A GI V+ +P
Sbjct: 187 GKKTEYHLKS-LGINTLGRLAGIPATFLKIHLG-TYAPYLLNAAAGIDNRPVE---MP-- 239
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS +T +L LSE++ + L + + A + +
Sbjct: 240 -AEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARVVQI 288
Score = 45 (20.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 211 IAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL----GTSLQNELG 266
+ K L SG N+ QT + + G+LDS + ++ LG + G Q E+
Sbjct: 298 LTRQKHLNHPCSG-NQEIFQTALKL--MNGILDS-DRRSVRLLGVGISDFCGPEKQLEID 353
Query: 267 VTTVG-DLLKFSEDKLQESYGFNT 289
+ L S DK+++ YGF +
Sbjct: 354 PARARLEKLDASLDKIRQKYGFGS 377
>TIGR_CMR|DET_0011 [details] [associations]
symbol:DET_0011 "DNA polymerase IV, putative"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
RefSeq:YP_180766.1 ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3
GeneID:3229123 KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL
ProtClustDB:CLSK836830 BioCyc:DETH243164:GJNF-11-MONOMER
Uniprot:Q3ZAI3
Length = 390
Score = 147 (56.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 41/117 (35%), Positives = 59/117 (50%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R + HVDLD F+V VEQ +P+L+ P V E + G + A YEAR +G+ M
Sbjct: 4 RRVMHVDLDAFFVSVEQSLRPELKSKPVIVGGKPE-RRGVVAAASYEARKFGIHSGMPLL 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
AK +CPQ ++ G L YR + + IL+ E +DE YL++T
Sbjct: 63 SAKHLCPQAVFIE-----GNHRL--YREYSEKFMQILSDFSPFLEPMGLDEAYLEVT 112
Score = 121 (47.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 45/170 (26%), Positives = 73/170 (42%)
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
++R ++ E S GIA++K++AK+A+ KP Q VP L L I M +
Sbjct: 127 KIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPAGEEAAFLAPLDISIMPGI 186
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
G K L++ LG+ T+G L L+ G +L N A GI V+ +P
Sbjct: 187 GKKTEYHLKS-LGINTLGRLAGIPATFLKIHLG-TYAPYLLNAAAGIDNRPVE---MP-- 239
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS +T +L LSE++ + L + + A + +
Sbjct: 240 -AEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARVVQI 288
Score = 45 (20.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 211 IAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL----GTSLQNELG 266
+ K L SG N+ QT + + G+LDS + ++ LG + G Q E+
Sbjct: 298 LTRQKHLNHPCSG-NQEIFQTALKL--MNGILDS-DRRSVRLLGVGISDFCGPEKQLEID 353
Query: 267 VTTVG-DLLKFSEDKLQESYGFNT 289
+ L S DK+++ YGF +
Sbjct: 354 PARARLEKLDASLDKIRQKYGFGS 377
>UNIPROTKB|P63985 [details] [associations]
symbol:dinB1 "DNA polymerase IV 1" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842577 GO:GO:0003887 PIR:F70760
RefSeq:NP_216053.2 RefSeq:NP_336041.2 RefSeq:YP_006514925.1
ProteinModelPortal:P63985 SMR:P63985
EnsemblBacteria:EBMYCT00000000713 EnsemblBacteria:EBMYCT00000071148
GeneID:13320135 GeneID:886414 GeneID:924358 KEGG:mtc:MT1589
KEGG:mtu:Rv1537 KEGG:mtv:RVBD_1537 PATRIC:18125261
TubercuList:Rv1537 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
OMA:LKKADMS ProtClustDB:PRK03348 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 Uniprot:P63985
Length = 468
Score = 158 (60.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 49/169 (28%), Positives = 76/169 (44%)
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
LR +V ET S G K +AK+ASG+ KP V + + LL LP++++ +G
Sbjct: 129 LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLWGIG 188
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
L + LG+ T+G L S+ + G G L +ARGI V R K
Sbjct: 189 PVAEEKL-HRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAKQI 247
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ +F L T+ + ++ + E +RL D R A T+T+
Sbjct: 248 SAESTFAVD--LTTMEQLHEAIDSIAEHAHQRLLRD----GRGARTITV 290
Score = 112 (44.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMR 69
+R + H+D+D F+ VEQ +P LRG P V G G++A YEAR YG + +M
Sbjct: 3 SRWVLHLDMDAFFASVEQLTRPTLRGRPVLVGGLG---GRGVVAGASYEARAYGARSAMP 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
+A+ + +V P RG + R V ++ E+ S DE + +
Sbjct: 60 MHQARRLIGVTAVVLPP--RGVVYGIASRRVFDTVRGLVPV---VEQLSFDEAFAEPPQL 114
Query: 130 AEAM 133
A A+
Sbjct: 115 AGAV 118
>UNIPROTKB|F1STE9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:FP326722 EMBL:CU972417 EMBL:CU694748
Ensembl:ENSSSCT00000008958 Uniprot:F1STE9
Length = 1253
Score = 143 (55.4 bits), Expect = 7.1e-15, Sum P(3) = 7.1e-15
Identities = 44/163 (26%), Positives = 78/163 (47%)
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
+RM++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 593 VRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVG 652
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 653 RSMESKLMS-LGIRTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 711
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
+ ++ G R + + +L L EE+ RL + + KR+
Sbjct: 712 SAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLETAGVKGKRL 752
Score = 94 (38.1 bits), Expect = 7.1e-15, Sum P(3) = 7.1e-15
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR- 110
+ + YEAR G++ M +AK++CP ++ V P D +Y+ + LA
Sbjct: 507 IASCSYEARQVGIRNGMYFGQAKQLCPSLQAV--PY-----DFHAYKEVARTMYETLASY 559
Query: 111 KGRCERASIDEVYLDLTDA-AEAMLAETPPESLDEVDEE 148
E S DE +D+T+ AE L TP E + V E
Sbjct: 560 THNIEAVSCDEALVDITEILAETRL--TPDEFANAVRME 596
Score = 88 (36.0 bits), Expect = 7.1e-15, Sum P(3) = 7.1e-15
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG 56
I HVD+DCF+V V R +P L+G P AV N G + G
Sbjct: 416 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTS-NRGTGRAPLCPG 457
Score = 40 (19.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 221 ASGMNKPAQQTT-VPFSSVKGLLDSLPIKKMKQ 252
++G + PA Q++ P SS +LD L ++K K+
Sbjct: 831 SAGPSHPAVQSSHFPGSS-HSVLDLLQVQKTKK 862
>UNIPROTKB|Q0BZW2 [details] [associations]
symbol:dinB "DNA polymerase IV" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006261 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:YP_760981.1 ProteinModelPortal:Q0BZW2
STRING:Q0BZW2 GeneID:4289730 KEGG:hne:HNE_2286 PATRIC:32217415
OMA:PALCRDC ProtClustDB:PRK02794
BioCyc:HNEP228405:GI69-2308-MONOMER Uniprot:Q0BZW2
Length = 424
Score = 137 (53.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 44/130 (33%), Positives = 61/130 (46%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IAHVD D FY VE+R P L+ P V + G + Y AR YGV+ +M +A
Sbjct: 38 IAHVDCDAFYASVEKRDNPTLKDKPLIV---GGGQRGVVTTCCYIARLYGVRSAMPMFKA 94
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
+ CP + V VP D YR A + + + ++ SIDE YLDL+ +
Sbjct: 95 LKACP--DAVVVP-----PDFRKYREAAKAIRAEMDHLTPLVQQVSIDEAYLDLS-GTDR 146
Query: 133 MLAETPPESL 142
+ P SL
Sbjct: 147 LHGAPPAASL 156
Score = 128 (50.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 40/129 (31%), Positives = 56/129 (43%)
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
+ L V +E T S G++ NK LAK AS ++KP + + L P+ +
Sbjct: 156 LARLAKNVEREVGVTVSVGLSSNKFLAKTASELDKPRGFAIIAPEEAEAFLAPHPVGFLH 215
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G K SL N+ G T+ D+ K L YG TG WL A G +V
Sbjct: 216 GVGPKFAESL-NKDGFYTIEDIQKADLKSLIRRYG-ETGDWLKRCAHGRDNRKVNPHEDR 273
Query: 312 KSHGSGKSF 320
KS S +F
Sbjct: 274 KSVSSETTF 282
>RGD|1305212 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10116
"Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1305212 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:CH473971
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201 KO:K03510
OrthoDB:EOG46T310 IPI:IPI00870858 RefSeq:NP_001099607.1
UniGene:Rn.136855 Ensembl:ENSRNOT00000016189 GeneID:291526
KEGG:rno:291526 NextBio:632673 Uniprot:D4A8I8
Length = 732
Score = 229 (85.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 85/285 (29%), Positives = 130/285 (45%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ +R+I HVDLDCFY QVE P+L+ P V Q ++ ++ YEAR GVK+ M
Sbjct: 45 ASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ--KYL---VVTCNYEARKLGVKKLM 99
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV G+ DLS YR +V +L ER DE ++DLT
Sbjct: 100 NVRDAKEKCPQLVLVN-----GE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 153
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS---KATVKEWLCR--CDADHRD 182
+ E L + P DEV + H+ +S + + S + V + +A H
Sbjct: 154 EMVEKRLQQLPS---DEVPSVTMSGHVYNNQSVNLHSSTHVRLAVGSQIAAEMREAMHNQ 210
Query: 183 K-LLAC-GVL---IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
L C GV ++ +L V K + T + + L +N + + + +
Sbjct: 211 LGLTGCAGVAPNKLLAKLVSGVFKPNQQT----VLLPESCQHLIHSLNHIKEMPGIGYKT 266
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL--LKFSEDK 280
K L + L I + L +L+ ELG++ + L F EDK
Sbjct: 267 AKRL-EVLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDK 310
Score = 163 (62.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 55/180 (30%), Positives = 84/180 (46%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
LA G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 193 LAVGSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 252
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK+M +G K L+ LG+ +V DL F L++ G + + ++ G
Sbjct: 253 LNHIKEMPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKS 311
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 312 PVTPSGPPQSFSEEDTF---KKCSSEVEAKTKIEELLSSLLNRVCHD----GRKPHTIRL 364
Score = 37 (18.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 303 EEVQARLLPKSHGSGKSFP 321
EEVQ L+ + +G FP
Sbjct: 710 EEVQRELMAEWKRAGAEFP 728
>MGI|MGI:1347081 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1347081 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201
HOGENOM:HOG000234325 HOVERGEN:HBG053634 KO:K03510 OrthoDB:EOG46T310
EMBL:AF151691 EMBL:AY515316 EMBL:AY515317 EMBL:BC082278
IPI:IPI00553425 IPI:IPI00985545 RefSeq:NP_001129562.1
UniGene:Mm.244352 PDB:2KWU PDB:2KWV PDB:3AI4 PDBsum:2KWU
PDBsum:2KWV PDBsum:3AI4 ProteinModelPortal:Q6R3M4 SMR:Q6R3M4
IntAct:Q6R3M4 STRING:Q6R3M4 PhosphoSite:Q6R3M4 PRIDE:Q6R3M4
Ensembl:ENSMUST00000043286 Ensembl:ENSMUST00000161542 GeneID:26447
KEGG:mmu:26447 UCSC:uc008foi.2 UCSC:uc008fok.2 InParanoid:Q6R3M4
BindingDB:Q6R3M4 ChEMBL:CHEMBL5159 NextBio:304545 Bgee:Q6R3M4
CleanEx:MM_POLI Genevestigator:Q6R3M4 GermOnline:ENSMUSG00000038425
Uniprot:Q6R3M4
Length = 717
Score = 225 (84.3 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 93/295 (31%), Positives = 137/295 (46%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ ++ YEAR GV++ M
Sbjct: 25 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQ--KYL---VVTCNYEARKLGVRKLM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV G+ DLS YR +V +L ER DE ++DLT
Sbjct: 80 NVRDAKEKCPQLVLVN-----GE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 133
Query: 128 DAAEAMLAETPPESLDEV-------DEEALKSH-ILGLESKDGNDSKATVKE------WL 173
+ E L + P E + V + +++ H I+ G+ A ++E L
Sbjct: 134 EMVEKRLQQLPSEEVPSVTVFGHVYNNQSVNLHNIMHRRLVVGSQIAAEMREAMYNQLGL 193
Query: 174 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN-KPAQQTT 232
C +KLLA V V + Q + E +C + H+ K G+ K A++
Sbjct: 194 TGCAGVAPNKLLAKLVSGVFKPNQQTVLLPE-SCQH-LIHSLNHIKEIPGIGYKTAKRLE 251
Query: 233 V-PFSSVKGLLDSLPIKKM-KQLGGKLGTSLQN-ELG-----VTTVGDLLKFSED 279
V +SV L + PIK + K+LG + +Q G VT G FSE+
Sbjct: 252 VLGINSVHDL-QTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVTPSGPPQSFSEE 305
Score = 153 (58.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 53/180 (29%), Positives = 82/180 (45%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL F L++ G + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 292 PVTPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCQD----GRKPHTVRL 344
Score = 37 (18.1 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 465 DNFIDAAPLSPSGSESYSTLNSTELQN 491
D+ A S G ES+ L S EL +
Sbjct: 648 DSHKQTATASHQGLESHQGLESRELDS 674
>UNIPROTKB|F1S1Z7 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:CU464155 Ensembl:ENSSSCT00000005003 Uniprot:F1S1Z7
Length = 737
Score = 187 (70.9 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 44/100 (44%), Positives = 59/100 (59%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQ-YNEWKGGGLIAVGYEARNYGV 64
P S +R+I HVDLDCFY QVE P+L+G P V Q Y+ ++ YEAR +GV
Sbjct: 57 PAGSSSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYH------VVTCNYEARKFGV 110
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEV 104
K+ M+ +AKE CPQ+ LV G+ DL+ YR +V
Sbjct: 111 KKLMKVRDAKEKCPQLVLVN-----GE-DLTRYRETSYKV 144
Score = 76 (31.8 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 208 SAGIAHNKMLAKLASGM-------NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 260
S G + K+++ L S ++ +TT F + + ++ IK + +G K
Sbjct: 216 SIGDSERKLISNLVSAQVFEVVCNSEVLSRTTTQFFNKQN--NNYDIKSLG-IGYKTAKR 272
Query: 261 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
L+ LG+++V DL FS L++ G + + ++ G V P+S SF
Sbjct: 273 LE-VLGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEEDSF 331
Query: 321 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ + ++ + +L L R+C D R HT+ L
Sbjct: 332 ---KKCSSEVEAKNKIEELLANLLNRVCQD----GRKPHTVRL 367
>UNIPROTKB|J3KSW2 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KSW2 Ensembl:ENST00000579434
Uniprot:J3KSW2
Length = 637
Score = 169 (64.5 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 55/180 (30%), Positives = 85/180 (47%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 95 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 154
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 155 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 213
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C D R HT+ L
Sbjct: 214 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRL 266
Score = 91 (37.1 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 5 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 58
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLES 159
E L + +S DE+ + H+ +S
Sbjct: 59 EKRLQQL--QS-DELSAVTVSGHVYNNQS 84
>RGD|1306715 [details] [associations]
symbol:Rev1 "REV1, polymerase (DNA directed)" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA;ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=IEA;ISO] [GO:0042276
"error-prone translesion synthesis" evidence=IEA;ISO]
InterPro:IPR001126 InterPro:IPR012112 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 InterPro:IPR001357 Pfam:PF00533 RGD:1306715
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH473965 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03515 CTD:51455 OrthoDB:EOG4GF3DF IPI:IPI00951348
RefSeq:NP_001101683.1 UniGene:Rn.94641 Ensembl:ENSRNOT00000067197
GeneID:316344 KEGG:rno:316344 UCSC:RGD:1306715 NextBio:670745
Uniprot:D3ZRU9
Length = 1119
Score = 138 (53.6 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 44/163 (26%), Positives = 77/163 (47%)
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
LRM++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 592 LRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPGVG 651
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 652 RSMESKLAS-LGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 710
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
+ ++ G R + + +L L E+ RL + + KR+
Sbjct: 711 SAEINY-GIRFTQP-REAEAFLLSLSGEIQSRLEAAGMKGKRL 751
Score = 87 (35.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK 111
+ + YEAR G+K M AK++CP ++ V P D + R + LA
Sbjct: 506 IASCSYEARQVGIKNGMFFGHAKQLCPNLQAV--PY-----DFHACREVAQALYETLASY 558
Query: 112 GRC-ERASIDEVYLDLTDAAEAMLAET 137
E S DE +D+TD +LAET
Sbjct: 559 THSIEAVSCDEALIDVTD----ILAET 581
Score = 86 (35.3 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAV 41
+ HVD+DCF+V V R +P L+G P AV
Sbjct: 417 VMHVDMDCFFVSVGIRNRPDLKGKPVAV 444
>UNIPROTKB|F1PDA5 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:AAEX03000145 Ensembl:ENSCAFT00000000242
Uniprot:F1PDA5
Length = 702
Score = 213 (80.0 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 82/284 (28%), Positives = 131/284 (46%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
AR+I HVDLDCFY QVE P+L+G P V Q ++ ++ YEAR GVK+ M
Sbjct: 13 ARVIVHVDLDCFYAQVEMISNPELKGKPLGVQQ--KYL---VVTCNYEARKLGVKKLMNV 67
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDA 129
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 68 RDAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEM 121
Query: 130 AEAMLAETPPESLDEV-------DEEALKSH-ILGLESKDGNDSKATVKEWLCRCDADHR 181
E L + + L + + + + H IL + G+ A ++E + ++
Sbjct: 122 VEKRLQQLQSDELSALTVSGHVYNNQYINLHDILHIRLLVGSQIAAEMREAMY-----NQ 176
Query: 182 DKLLAC-GVL---IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
L C GV ++ +L V K + T + + + L +N + + + +
Sbjct: 177 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVL--LPESSQV--LIQSLNHVKEMPGIGYKT 232
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL--LKFSED 279
K L ++L I + L L+ ELG++ + L F ED
Sbjct: 233 AKRL-EALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGED 275
Score = 179 (68.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 56/180 (31%), Positives = 87/180 (48%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 159 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQS 218
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L +K+M +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 219 LNHVKEMPGIGYKTAKRLE-ALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNS 277
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + V++ + +L L R+C D R HT+ L
Sbjct: 278 PVTPSGPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVCQD----GRKPHTIRL 330
Score = 40 (19.1 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 513 KANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKK 572
K W+ L PS I +G+ + D +K ++ D+ +RS+P +Q+ K+
Sbjct: 443 KETNWDFL-PSGRIESTRTGE------APRDTADFSKEKDSDEFPLRSLPEGIDQEVFKE 495
Score = 37 (18.1 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 26/116 (22%), Positives = 47/116 (40%)
Query: 385 PLRYGTAKIQEDTFNLFQAGLREFL--GSFGVKTQGSHYSGWRITA----LSVSASKIVP 438
PLR I ++ F ++E + G G K QG + A LS ++K
Sbjct: 480 PLRSLPEGIDQEVFKELPVDIQEEILSGKSGEKVQGKGSLNCPLHASRGVLSFFSTK--Q 537
Query: 439 VLSGTCSIMKYFNGPDKFGSTSEQLPDNF-IDAAPLSPSGSE-SYSTLNSTELQNE 492
+ + + + + S S P ++++ SP S+ +YS + LQ+E
Sbjct: 538 MQDSPLNPKDHLSNSKQISSVSSCEPGTSGLNSSSSSPPSSQKNYSHYIDSRLQDE 593
>CGD|CAL0001748 [details] [associations]
symbol:orf19.4412 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 CGD:CAL0001748
Pfam:PF00533 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
EMBL:AACQ01000179 EMBL:AACQ01000178 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03515 RefSeq:XP_711860.1 RefSeq:XP_723600.1
ProteinModelPortal:Q59Q77 STRING:Q59Q77 GeneID:3646519
GeneID:3646539 KEGG:cal:CaO19.11890 KEGG:cal:CaO19.4412
Uniprot:Q59Q77
Length = 1113
Score = 135 (52.6 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 51/168 (30%), Positives = 80/168 (47%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ T +R V K T S G + N +LAKLA KP Q + F ++ L+S+ IK +
Sbjct: 518 LATRIRKDVFKLTNCPVSVGASTNVLLAKLALRKAKPNGQFYL-FDDIEKFLESIYIKDL 576
Query: 251 KQLGGKLGTSLQNELGVTT--VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ-- 306
G + L +E+ + + D++ S+ +L + G TGT L+ ARG+ ++
Sbjct: 577 PGFGRGILEKLNSEIQSSNPQIKDVVTISKQRLVQLLGEKTGTKLFEYARGMDETSIEID 636
Query: 307 -----ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 349
A L KS +F G R TV + +L +L EL +RL S
Sbjct: 637 TNNPEAVLGRKSVSVDVNF-GIR-FDTVEELDDFLMRLSRELYQRLVS 682
Score = 127 (49.8 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 36/134 (26%), Positives = 60/134 (44%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D ++I H+D DCF+ K+P L + + K + + Y AR YGVK
Sbjct: 385 DPGEKKVIMHIDFDCFFATASCLKRPDLDSSKHPIAVSHGGKTSDIASCNYVARKYGVKN 444
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCER---ASIDEVY 123
M +A ++CP +L+ +P + SY SE + L + SIDEV
Sbjct: 445 GMWLMQATKLCP--DLILLPY-----EFESYEKFSSEFYNYLLTSKFFDSIFPVSIDEVL 497
Query: 124 LDLTDAAEAMLAET 137
+D T + ++++
Sbjct: 498 VDATSYCHSGVSDS 511
Score = 48 (22.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 210 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT 269
GI N++ L +N P ++ ++ L+D+ +K KQ+ + N L V
Sbjct: 731 GIIGNEVKV-LYRMVNIPVKELRGISITISKLVDAEGVKSNKQMRLPFKKAESNALSVRD 789
Query: 270 VGDLLKFSEDKLQES 284
+ L K S+ K +S
Sbjct: 790 LKQLQKMSDSKDNKS 804
Score = 37 (18.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGNDSK 166
+E P L +D+E+ +HI L + ++
Sbjct: 10 SEEYPSFLRSLDDESFITHIQDLNKQHSQKNR 41
>TIGR_CMR|SPO_3280 [details] [associations]
symbol:SPO_3280 "DNA polymerase IV, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281 GO:GO:0006261
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:PALCRDC ProtClustDB:PRK02794
RefSeq:YP_168477.1 ProteinModelPortal:Q5LND1 GeneID:3193147
KEGG:sil:SPO3280 PATRIC:23380003 Uniprot:Q5LND1
Length = 420
Score = 136 (52.9 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 42/157 (26%), Positives = 75/157 (47%)
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+++ L ++ E T S G++HNK LAK+AS + KP + + + L P++
Sbjct: 156 VMLARLVKRMKDELGVTGSIGLSHNKFLAKVASDLEKPRGFSVIGRAETAEFLRDKPVRL 215
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G SL+ G+ T DLL++ ++ L +G G LW++ARG V A
Sbjct: 216 IWGIGPAAQESLERA-GIRTFTDLLRWEQEALVARFGA-MGQRLWHLARGEDRRRVSAHD 273
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 346
KS + +F V W ++ E++++R
Sbjct: 274 PIKSISNETTFFEDTGDADVLDGHIW--RMAEKVADR 308
Score = 113 (44.8 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IAH+D D FY VE+R P L P + K G + Y AR GV+ +M +A
Sbjct: 40 IAHMDCDAFYASVEKRDNPDLADKPVII---GGGKRGVVSTACYVARIRGVRSAMPMFQA 96
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLT 127
++CP+ ++ K +S Y ++ +++ E S+DE ++DL+
Sbjct: 97 LKLCPEAVVI-------KPRMSVYAEVSKQIRALMDELTPVVEPLSLDEAFMDLS 144
>WB|WBGene00017696 [details] [associations]
symbol:polk-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0003887 EMBL:FO080222 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 EMBL:FO080380 GeneTree:ENSGT00530000062942
PIR:S44637 RefSeq:NP_001122692.1 RefSeq:NP_001122693.1
UniGene:Cel.10581 ProteinModelPortal:P34409 SMR:P34409
STRING:P34409 EnsemblMetazoa:F22B7.6a GeneID:176209
KEGG:cel:CELE_F22B7.6 UCSC:F22B7.6b.2 CTD:176209 WormBase:F22B7.6a
WormBase:F22B7.6b HOGENOM:HOG000082711 InParanoid:P34409 KO:K03511
OMA:FMLAKIC NextBio:891590 Uniprot:P34409
Length = 596
Score = 199 (75.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 76/275 (27%), Positives = 122/275 (44%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
+D+D ++ VE R P LR +P AV L Y AR +GV+ M G + ++
Sbjct: 88 IDMDAYFAAVEMRDNPALRTVPMAV-----GSSAMLSTSNYLARRFGVRAGMPGFISNKL 142
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + +V P + Y + I S+DE ++DLTD +
Sbjct: 143 CPSLTIV--P-----GNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVAS--- 192
Query: 136 ETPPESLDEVDEEALKSHILG------LESKDGNDSKAT---VKEWLC-RCDADHR---D 182
+++ K H G L D N++ ++E +C +C+ + D
Sbjct: 193 --------NTEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYD 244
Query: 183 KL-LACG-VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSV 238
+ G V E+R +V + T TCSAGIA N MLAK+ S +NKP Q + +++
Sbjct: 245 HVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAI 304
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
L LPI+K+ +G L+ + + TVGD+
Sbjct: 305 MEFLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDM 338
>SGD|S000002827 [details] [associations]
symbol:RAD30 "DNA polymerase eta, involved in translesion
synthesis during post-rep" species:4932 "Saccharomyces cerevisiae"
[GO:0042276 "error-prone translesion synthesis" evidence=IDA;IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=IDA]
[GO:0005657 "replication fork" evidence=IPI] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SGD:S000002827 EMBL:U33007 GO:GO:0005634
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:BK006938 KO:K09043
GO:GO:0005657 GO:GO:0003887 GO:GO:0070987 GO:GO:0042276
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
RefSeq:NP_010707.3 GeneID:852028 KEGG:sce:YDR419W KO:K03509
OrthoDB:EOG4M0J8V PIR:S69702 RefSeq:NP_010711.3 PDB:1JIH PDB:2R8J
PDB:2R8K PDB:2WTF PDB:2XGP PDB:2XGQ PDB:3MFH PDB:3MFI PDB:3OHA
PDB:3OHB PDBsum:1JIH PDBsum:2R8J PDBsum:2R8K PDBsum:2WTF
PDBsum:2XGP PDBsum:2XGQ PDBsum:3MFH PDBsum:3MFI PDBsum:3OHA
PDBsum:3OHB ProteinModelPortal:Q04049 SMR:Q04049 DIP:DIP-6500N
IntAct:Q04049 MINT:MINT-708283 STRING:Q04049 PaxDb:Q04049
EnsemblFungi:YDR419W GeneID:852033 KEGG:sce:YDR423C CYGD:YDR419w
HOGENOM:HOG000065930 OMA:IPIHTAV EvolutionaryTrace:Q04049
NextBio:970255 Genevestigator:Q04049 GermOnline:YDR419W
Uniprot:Q04049
Length = 632
Score = 116 (45.9 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S IAH+D++ F+ QVEQ + + P VQ+N +IAV Y AR YG+ R
Sbjct: 21 SSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNS-----IIAVSYAARKYGISRMD 75
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNA-GSEV 104
EA + C + + V + D Y + GS V
Sbjct: 76 TIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWV 112
Score = 92 (37.4 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
D D +LA G + +R + +T S G++ K + KLAS KP QT V +
Sbjct: 232 DWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCL 291
Query: 239 KGLLD--SLPIKKMKQLGGKLGTSL 261
LD I LGG LG L
Sbjct: 292 LDFLDCGKFEITSFWTLGGVLGKEL 316
Score = 78 (32.5 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 293 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 352
L+ ++RG G + +R + KS S K+ G ++ ++ WL C EL+ R+ DLE
Sbjct: 374 LFKLSRGRYGLPLSSRPVVKSMMSNKNLRG-KSCNSIVDCISWLEVFCAELTSRI-QDLE 431
Query: 353 Q 353
Q
Sbjct: 432 Q 432
Score = 73 (30.8 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 84 QVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVYLDL 126
Q+ V K L YR + + I K C ERASIDEV+LDL
Sbjct: 118 QISVEDHKVSLEPYRRESRKALKIF--KSACDLVERASIDEVFLDL 161
>UNIPROTKB|Q5JTF2 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006301 GO:GO:0003887 GO:GO:0006290 EMBL:AL353602
EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181 HOGENOM:HOG000115605
IPI:IPI00646080 SMR:Q5JTF2 STRING:Q5JTF2 Ensembl:ENST00000443535
Uniprot:Q5JTF2
Length = 72
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 128 DAAEAML 134
A + L
Sbjct: 61 SAVQERL 67
>DICTYBASE|DDB_G0287149 [details] [associations]
symbol:DDB_G0287149 "UMUC-like DNA-repair protein"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 dictyBase:DDB_G0287149
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
EMBL:AAFI02000098 KO:K03511 RefSeq:XP_637357.1
ProteinModelPortal:Q54KS3 EnsemblProtists:DDB0304434 GeneID:8625979
KEGG:ddi:DDB_G0287149 InParanoid:Q54KS3 OMA:YANVEEM Uniprot:Q54KS3
Length = 517
Score = 116 (45.9 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 35/119 (29%), Positives = 58/119 (48%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R H+D+D FY VE+ +L G P AV + L+ Y AR YGV+ + G
Sbjct: 80 SRTFIHIDMDAFYANVEEMDNKELIGHPVAVGSIDM-----LVTSNYAARAYGVRSGLPG 134
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTD 128
A ++CP L+ +P + + YR + +IL + + S+DE +D+T+
Sbjct: 135 LLAMKLCPH--LIILP-----SRMDRYREVSLIIRNILYKFDKNYVSPSLDEGCIDITE 186
Score = 108 (43.1 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 24/88 (27%), Positives = 50/88 (56%)
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
G+ + +L+ + ++T TCS GI+ + +L+K++S +NKP + + + ++ I
Sbjct: 196 GIDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKPNGYFYLDKQYSQEFIKTIQI 255
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLK 275
KK+ +G K+ L LG+ V D+++
Sbjct: 256 KKLPGIG-KVRQELLKTLGLEFVSDIIE 282
Score = 52 (23.4 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 461 EQLPDNFIDAAPLSPSGSESYSTLNSTELQN 491
E++ ++D+ P SPS S S S+ +S+ Q+
Sbjct: 430 EEIDSYYLDSPPSSPSISSSSSSSSSSSKQS 460
Score = 41 (19.5 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 430 SVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID 469
S S+SK P C + K F P+ F SE++ FI+
Sbjct: 453 SSSSSKQSP-----CKLKKTFIYPNNFNEHSEKIWKLFIN 487
Score = 37 (18.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 562 PIKSNQQEHKKSALKDKVHSCPSFY 586
P KS+ + +KK + K +C Y
Sbjct: 309 PNKSSFRINKKKTMISKEKNCKELY 333
>ZFIN|ZDB-GENE-081105-180 [details] [associations]
symbol:si:dkey-57a22.7 "si:dkey-57a22.7"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 ZFIN:ZDB-GENE-081105-180
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03515
HOGENOM:HOG000154094 HOVERGEN:HBG054140 EMBL:CR392332 EMBL:CR536604
IPI:IPI00862463 RefSeq:NP_001116772.1 UniGene:Dr.61598 SMR:B0UY97
Ensembl:ENSDART00000134915 GeneID:570043 KEGG:dre:570043
NextBio:20889959 Uniprot:B0UY97
Length = 1268
Score = 191 (72.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 91/347 (26%), Positives = 147/347 (42%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV--G----YEARNYGVK-- 65
+ HVD+DCF+V V R +P L G P AV N +G G +A G E + Y K
Sbjct: 452 VLHVDMDCFFVSVGIRHRPDLIGKPVAVTS-N--RGPGRVAQRPGANPQLEFQYYQNKQK 508
Query: 66 --RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 123
R + D E+ P + +VP DL++ A S AR+
Sbjct: 509 HYRKEKTDGDLEMTPSPQDGEVPSNGVHEDLAALSMAEIASCSYEARQAGVRNGMFFGRA 568
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
L +++ P E AL + + L S N + E L D
Sbjct: 569 KQLCPDLQSV-----PYDFHAYKEVALAMYEI-LASYTHNIEALSCDEAL----VDATAL 618
Query: 184 LLACGVL---IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
L+ GV + +R + ++T S G++ N +LA++A+ KP Q + V
Sbjct: 619 LVELGVSPDELARSIREDIKEKTGCCASVGMSSNILLARMATRKAKPKGQYLLRSEEVDD 678
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
+ P+ + +G + + L + LGV+T GDL + S +LQ +G TG L+ RG+
Sbjct: 679 FIRDQPVSSLPGVGRSMSSKLTS-LGVSTCGDLQQLSLSQLQREFGPRTGQTLFRFCRGL 737
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
V++ KS + ++ R + V + +LN L E+ +RL
Sbjct: 738 DDRPVRSEKERKSVSAEMNY-NIRFTQ-VEEAESFLNNLSMEVQKRL 782
Score = 43 (20.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 520 LDPSCSISKQTSGQWFHSGTES------SSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKS 573
+DP SK G + H T + + S++ P D S ++++PI +Q +
Sbjct: 943 IDPMPGTSK---GDYHHPHTPNHVRACLNISIEVPSPSQVDPSVLKALPIDIRRQVEETW 999
Query: 574 ALKDKVHSCPSFY 586
+++ S S Y
Sbjct: 1000 RYREEQPSTSSHY 1012
>UNIPROTKB|J3QR36 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000577612 Uniprot:J3QR36
Length = 195
Score = 129 (50.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 37/109 (33%), Positives = 55/109 (50%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK 111
++ YEAR GVK+ M +AKE CPQ+ LV G+ DL+ YR +V +L
Sbjct: 45 VVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEF 98
Query: 112 GRC-ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES 159
ER DE ++DLT+ E L + +S DE+ + H+ +S
Sbjct: 99 SPVVERLGFDENFVDLTEMVEKRLQQL--QS-DELSAVTVSGHVYNNQS 144
Score = 74 (31.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 224
L G I E+R + + T AG+A NK+LAKL SG+
Sbjct: 155 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGV 194
>UNIPROTKB|F1N787 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 GO:GO:0009411 GO:GO:0000287 GO:GO:0003684
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 OMA:YRFCRGL EMBL:DAAA02030163
EMBL:DAAA02030164 EMBL:DAAA02030165 EMBL:DAAA02030166
EMBL:DAAA02030167 EMBL:DAAA02030168 IPI:IPI00731687
Ensembl:ENSBTAT00000061518 Uniprot:F1N787
Length = 1202
Score = 183 (69.5 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 84/353 (23%), Positives = 149/353 (42%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR---NYGVKRSMRG 70
I HVD+DCF+V V R +P L+G P AV N G + G + Y + +RG
Sbjct: 368 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTS-NRGTGRAPLRPGANPQLEWQYYQNKILRG 426
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASI-DEVYLDLTDA 129
+A E+ P + ++ A ++ + S+ I + + I + +Y
Sbjct: 427 -KAAEI-PDPSTWE---SQDSAQINGIDSVLSKA-EIASCSYEARQVGIRNGMYFGYAKQ 480
Query: 130 AEAMLAETPPE--SLDEVDE---EALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
L P + + EV + E L S+ +E+ +++ + E L +
Sbjct: 481 LCPNLQAVPYDFHAYKEVAQTMYETLASYTHDIEAVSCDEALVDITEILAETRLTPDE-- 538
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+RM++ +T+ S GI N +LA++A+ KP Q + V +
Sbjct: 539 ------FANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRG 592
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
+ + +G + + L + LG+ T GDL + KLQ+ +G TG L+ RG+
Sbjct: 593 QLVTNLPGVGRSMESKLMS-LGIRTCGDLQYMTMAKLQKEFGSKTGQMLYRFCRGLDDRP 651
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
V+ KS + ++ G R + +L L EE+ RL + + KR+
Sbjct: 652 VRTEKERKSISAEINY-GIR-FSQPKEAEAFLLSLSEEIQRRLEAVGMKGKRL 702
>UNIPROTKB|Q9UBZ9 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017125 "deoxycytidyl transferase
activity" evidence=IEA] [GO:0042276 "error-prone translesion
synthesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009411 "response to UV" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0005654
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 EMBL:AC018690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:3VU7 PDBsum:3VU7 GO:GO:0017125 PDB:2LSK PDBsum:2LSK KO:K03515
CTD:51455 HOGENOM:HOG000154094 HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF
EMBL:AF151538 EMBL:AF206019 EMBL:AB047646 EMBL:AF357886
EMBL:AK002087 EMBL:AJ131720 IPI:IPI00008816 IPI:IPI00552928
IPI:IPI00552936 RefSeq:NP_001032961.1 RefSeq:NP_057400.1
UniGene:Hs.443077 PDB:2EBW PDB:2LSY PDB:3GQC PDBsum:2EBW
PDBsum:2LSY PDBsum:3GQC ProteinModelPortal:Q9UBZ9 SMR:Q9UBZ9
MINT:MINT-140323 STRING:Q9UBZ9 PhosphoSite:Q9UBZ9 DMDM:59798439
PaxDb:Q9UBZ9 PRIDE:Q9UBZ9 Ensembl:ENST00000258428
Ensembl:ENST00000393445 GeneID:51455 KEGG:hsa:51455 UCSC:uc002tac.3
UCSC:uc002tad.3 UCSC:uc002tae.1 GeneCards:GC02M100016
HGNC:HGNC:14060 HPA:HPA044534 HPA:HPA051036 MIM:606134
neXtProt:NX_Q9UBZ9 PharmGKB:PA162401120 InParanoid:Q9UBZ9
OMA:YRFCRGL PhylomeDB:Q9UBZ9 ChiTaRS:REV1 EvolutionaryTrace:Q9UBZ9
GenomeRNAi:51455 NextBio:55069 ArrayExpress:Q9UBZ9 Bgee:Q9UBZ9
CleanEx:HS_REV1 Genevestigator:Q9UBZ9 GermOnline:ENSG00000135945
Uniprot:Q9UBZ9
Length = 1251
Score = 182 (69.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 82/350 (23%), Positives = 150/350 (42%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR---NYGVKRSMRG 70
I HVD+DCF+V V R +P L+G P AV N G + G + Y + ++G
Sbjct: 419 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTS-NRGTGRAPLRPGANPQLEWQYYQNKILKG 477
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL--ARKGRCERASIDEVYLDLTD 128
+A ++ P L + P + + S + +E+ S AR+ + L
Sbjct: 478 -KAADI-PDSSLWENPDSAQANGIDSVLSR-AEIASCSYEARQLGIKNGMFFGHAKQLCP 534
Query: 129 AAEAMLAETPP-ESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+A+ + + + + E L S+ +E+ +++ + E L +
Sbjct: 535 NLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDE----- 589
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+RM++ +T+ S GI N +LA++A+ KP Q + V + +
Sbjct: 590 ---FANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLV 646
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ +G + + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+
Sbjct: 647 TNLPGVGHSMESKLAS-LGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRT 705
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS + ++ G R + + +L L EE+ RL + + KR+
Sbjct: 706 EKERKSVSAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEATGMKGKRL 753
Score = 45 (20.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 540 ESSSSLDQNKPQNRDDSRMRSVP--IKSNQQEHKKSALKDK 578
E ++ DQ + Q + + +S + N H K+A+K+K
Sbjct: 1031 ELKAAYDQRQRQGENSTHQQSASASVPKNPLLHLKAAVKEK 1071
>MGI|MGI:1929074 [details] [associations]
symbol:Rev1 "REV1 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017125
"deoxycytidyl transferase activity" evidence=IDA] [GO:0042276
"error-prone translesion synthesis" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 MGI:MGI:1929074 Pfam:PF00533 GO:GO:0005634
GO:GO:0009411 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:4FJO PDBsum:4FJO GO:GO:0017125 GeneTree:ENSGT00530000062942
PDB:2LSJ PDBsum:2LSJ KO:K03515 CTD:51455 HOGENOM:HOG000154094
HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF OMA:YRFCRGL ChiTaRS:REV1
EMBL:AB057418 EMBL:AF179302 EMBL:BC058093 IPI:IPI00396706
RefSeq:NP_062516.2 UniGene:Mm.389103 PDB:2LSG PDBsum:2LSG
ProteinModelPortal:Q920Q2 SMR:Q920Q2 DIP:DIP-41772N IntAct:Q920Q2
STRING:Q920Q2 PhosphoSite:Q920Q2 PRIDE:Q920Q2
Ensembl:ENSMUST00000027251 GeneID:56210 KEGG:mmu:56210
UCSC:uc007asp.1 InParanoid:Q920Q2 NextBio:312050 Bgee:Q920Q2
CleanEx:MM_REV1 Genevestigator:Q920Q2 GermOnline:ENSMUSG00000026082
Uniprot:Q920Q2
Length = 1249
Score = 139 (54.0 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 44/163 (26%), Positives = 78/163 (47%)
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
LR+++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 592 LRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTNLPGVG 651
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 652 RSMESKLAS-LGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 710
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
+ ++ G R + + +L L EE+ RL + + KR+
Sbjct: 711 SAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEAAGMKGKRL 751
Score = 94 (38.1 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR---NYGVKRSMRG 70
+ HVD+DCF+V V R +P L+G P AV N G + G + Y R++RG
Sbjct: 417 VMHVDMDCFFVSVGIRNRPDLKGKPVAVTS-NRGTGTAPLRPGANPQLEWQYYQNRALRG 475
Query: 71 DEA 73
A
Sbjct: 476 KAA 478
Score = 85 (35.0 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK 111
+ + YEAR G+K M AK++CP ++ V P D + R + LA
Sbjct: 506 IASCSYEARQVGIKNGMFFGYAKQLCPNLQAV--PY-----DFHACREVAQAMYETLASY 558
Query: 112 GRC-ERASIDEVYLDLTDAAEAMLAET 137
E S DE +D+TD +LAET
Sbjct: 559 THSIEAVSCDEALIDVTD----ILAET 581
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 505 ADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIK 564
A+L Q E+KA D + T+ Q S + + L Q KP D R + K
Sbjct: 1026 AEL-QKELKA----AYDQRQRQGEDTTHQQPTSTSVPKNPLLQLKPPAMKDKRNKR---K 1077
Query: 565 SNQQEHKKSALKDKVHSCPS 584
+ +KS LK+K+ S P+
Sbjct: 1078 NLIGSPRKSPLKNKLLSSPA 1097
Score = 38 (18.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 537 SGTESSSSLDQNKPQN-RDDSRMRSVPIKSNQQEHKK 572
S + SSL +P + RD +++ K ++EHK+
Sbjct: 834 SRPSAQSSLFSGRPHSVRDLFQLQKAK-KPTEEEHKE 869
>UNIPROTKB|F1MAB3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00372895 Ensembl:ENSRNOT00000040799
ArrayExpress:F1MAB3 Uniprot:F1MAB3
Length = 711
Score = 170 (64.9 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 248
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q VP S+V + LPI+
Sbjct: 156 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIR 215
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 306
K+ +G K+ + LG+ T +L + + S F+ +W + ++A G+ ++
Sbjct: 216 KVSGIG-KVTEKMLLALGIVTCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL- 270
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
AR G KS R + + + LC+EL L DL++ T+T+
Sbjct: 271 AR-----DGERKSMSVERTFSEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 321
Score = 46 (21.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 458 STSEQLPDNFIDAAPLSPSGSESYSTLN 485
S E PD+ + PLSP+ +E+ STL+
Sbjct: 581 SEGEGYPDSQGKSCPLSPA-NETVSTLS 607
>UNIPROTKB|J3KRG0 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000580880 Uniprot:J3KRG0
Length = 145
Score = 97 (39.2 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT +
Sbjct: 95 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVL 143
Score = 91 (37.1 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 5 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 58
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLES 159
E L + +S DE+ + H+ +S
Sbjct: 59 EKRLQQL--QS-DELSAVTVSGHVYNNQS 84
>UNIPROTKB|D4A662 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173
SMART:SM00734 RGD:620058 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
IPI:IPI00951859 Ensembl:ENSRNOT00000065248 ArrayExpress:D4A662
Uniprot:D4A662
Length = 434
Score = 158 (60.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/115 (39%), Positives = 58/115 (50%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VE R P+L+ P AV + L Y AR +GV+ +M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LATSNYHARRFGVRAAMPGFIA 156
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLT 127
K +CPQ L+ VP + YR EV ILA A S+DE YL++T
Sbjct: 157 KRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNIT 204
Score = 47 (21.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 27/123 (21%), Positives = 49/123 (39%)
Query: 458 STSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKAN-- 515
S E PD+ + PLSP+ +E+ STL+ + E V + + LE + +
Sbjct: 300 SEGEGYPDSQGKSCPLSPA-NETVSTLSREDSAQPCTDEVVTGRALVCPVCNLEQETSDL 358
Query: 516 TWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSAL 575
T + ++K + +S +S+ Q K R R++ K+ + K
Sbjct: 359 TLFNIHVDICLNKGIIQELRNSEV---NSVKQPKGSTRSTDRLQKASGKTKRAGRKTKGS 415
Query: 576 KDK 578
K
Sbjct: 416 TSK 418
>ASPGD|ASPL0000039840 [details] [associations]
symbol:AN3373 species:162425 "Emericella nidulans"
[GO:0000077 "DNA damage checkpoint" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:BN001306 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:VHVDCDA EnsemblFungi:CADANIAT00009669
HOGENOM:HOG000082709 Uniprot:C8VHQ1
Length = 612
Score = 158 (60.7 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 45/142 (31%), Positives = 73/142 (51%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
++ + HVD D F+ VE+ +P+L+ +P AV + G L YEAR +G + M
Sbjct: 112 SQYVVHVDCDAFFAAVEELDRPELKTVPMAVGK------GVLTTCNYEARKFGCRSGMAS 165
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
AK++CPQ L+ +P + Y E+ +ILA+ + E ASIDE YL++T
Sbjct: 166 FVAKKLCPQ--LICLP-----QNYEKYTAKAQEIRAILAQYDPQFESASIDEAYLNITAY 218
Query: 130 AEAMLAETPPESLDEVDEEALK 151
+ P E++ + E L+
Sbjct: 219 CREKQLD-PDEAVSRMRAEILE 239
Score = 141 (54.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 54/227 (23%), Positives = 102/227 (44%)
Query: 139 PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQ 198
P++ ++ +A + + L D A++ E A R+K L V+ +R +
Sbjct: 179 PQNYEKYTAKAQEIRAI-LAQYDPQFESASIDEAYLNITAYCREKQLDPDEA-VSRMRAE 236
Query: 199 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGK 256
+L++T+ + SAGIA N +AK+ S NKP Q VP +++ + LP++K+ +G
Sbjct: 237 ILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEKNAIMEFMRDLPMRKINGVGRV 296
Query: 257 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 316
L + +G+ T GD+ L + +G +L G+ ++Q P
Sbjct: 297 FERELDS-IGIKTCGDIFP-QRAYLAKLFGEKALHFLAQCYLGVGRTKIQ----PAESYE 350
Query: 317 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS R ++ + + +L ++ L DL + + + TL L
Sbjct: 351 RKSVGTERTFHEISKREEFREKLWS-CAQELEKDLSRTQFMGRTLVL 396
>ZFIN|ZDB-GENE-060526-137 [details] [associations]
symbol:polk "polymerase (DNA directed) kappa"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 ZFIN:ZDB-GENE-060526-137 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOVERGEN:HBG101212 OrthoDB:EOG4Z8XVV
EMBL:BX294131 IPI:IPI00806343 UniGene:Dr.86433 SMR:B0S5R3
Ensembl:ENSDART00000141039 OMA:FISTEDK Uniprot:B0S5R3
Length = 875
Score = 160 (61.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 44/121 (36%), Positives = 62/121 (51%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD+D FY VE R P+L+ P AV + L Y AR +GV+ +M G
Sbjct: 101 RVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSM-----LSTSNYHARRFGVRAAMPGF 155
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
AK++CP +LV VP + YR ++V I + S+DE YLD+T+
Sbjct: 156 IAKKLCP--DLVIVPT-----NFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYLDITEHL 208
Query: 131 E 131
E
Sbjct: 209 E 209
Score = 158 (60.7 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 84/307 (27%), Positives = 133/307 (43%)
Query: 77 CPQIELVQVPVARGKADL---SSY--RNAG--SEVVSILARKGRCERASIDEVYLDLTDA 129
CP EL P+A G + S+Y R G + + +A+K C I D A
Sbjct: 120 CP--ELKDKPMAVGSMSMLSTSNYHARRFGVRAAMPGFIAKK-LCPDLVIVPTNFDKYRA 176
Query: 130 AEAMLAET-----P---PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
A + E P P SLDE + + H+ + K D+ T K + AD +
Sbjct: 177 VSAQVREIFSEYDPNFMPMSLDEAYLD-ITEHLE--QRKHWPDTMRTHKICDAKTGADGK 233
Query: 182 DKLLACGVL-IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS--V 238
++ V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P V
Sbjct: 234 AEVFGTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVV 293
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNI 296
+ LP++K+ +G K+ + LG+ T L + S F+ +W +I
Sbjct: 294 MDFMKDLPVRKVSGVG-KVTEKMLAALGIVTCSQL---GQQMALLSLLFSETSWHHFLHI 349
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
+ G+ ++ KS + ++F G + A Q+ LC+EL L DL++
Sbjct: 350 SLGLGSTYMERDSERKSMSTERTF-GEMS---DAGEQY---SLCKELCHDLAQDLQREGL 402
Query: 357 IAHTLTL 363
T+TL
Sbjct: 403 KGKTVTL 409
>UNIPROTKB|Q81NC2 [details] [associations]
symbol:BAS3053 "ImpB/mucB/samB family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 124 (48.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 40/172 (23%), Positives = 81/172 (47%)
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL----PIKK 249
+ + ++ + T C+ GIA N +++K+A + + V + + + + L P+ K
Sbjct: 137 QFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIPTKLWSIRPLSK 196
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ K T L N+ G+ ++GDL + L++S+G G L + GI + +
Sbjct: 197 FWGISHKTETKL-NQKGIHSIGDLANYPLKYLKQSFGV-IGEELHLHSNGIDFSRISEKY 254
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+P + GKS + L +++ + L E +E +C L Q ++A T+
Sbjct: 255 VPVTTSIGKS----QILMRDYTIEEFPIILLEH-TEEVCYRLRQQNKLAQTV 301
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 40/133 (30%), Positives = 57/133 (42%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPT--AVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
RII VDL FY V K L L T AVV G ++A + GVK+ R
Sbjct: 10 RIILCVDLRSFYASVSCIKMG-LDPLHTKLAVVGDMNRNGSIVLAATPPLKAMGVKKLAR 68
Query: 70 GDEAKEVCPQIELVQV-PVARGKADLSSY-RNAGSEVVSILARKGRCERASIDEVYLDLT 127
E+ Q +++ V P+ S+Y + V I + SIDE ++D+T
Sbjct: 69 ---LYEIPRQKDILIVNPIMGTYIKCSNYITKLALQYVPI----EDFHQYSIDEFFMDIT 121
Query: 128 DAAEAMLAETPPE 140
D+ + A P E
Sbjct: 122 DSIH-LFARNPNE 133
>TIGR_CMR|BA_3288 [details] [associations]
symbol:BA_3288 "impB/mucB/samB family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 124 (48.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 40/172 (23%), Positives = 81/172 (47%)
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL----PIKK 249
+ + ++ + T C+ GIA N +++K+A + + V + + + + L P+ K
Sbjct: 137 QFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIPTKLWSIRPLSK 196
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ K T L N+ G+ ++GDL + L++S+G G L + GI + +
Sbjct: 197 FWGISHKTETKL-NQKGIHSIGDLANYPLKYLKQSFGV-IGEELHLHSNGIDFSRISEKY 254
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+P + GKS + L +++ + L E +E +C L Q ++A T+
Sbjct: 255 VPVTTSIGKS----QILMRDYTIEEFPIILLEH-TEEVCYRLRQQNKLAQTV 301
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 40/133 (30%), Positives = 57/133 (42%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPT--AVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
RII VDL FY V K L L T AVV G ++A + GVK+ R
Sbjct: 10 RIILCVDLRSFYASVSCIKMG-LDPLHTKLAVVGDMNRNGSIVLAATPPLKAMGVKKLAR 68
Query: 70 GDEAKEVCPQIELVQV-PVARGKADLSSY-RNAGSEVVSILARKGRCERASIDEVYLDLT 127
E+ Q +++ V P+ S+Y + V I + SIDE ++D+T
Sbjct: 69 ---LYEIPRQKDILIVNPIMGTYIKCSNYITKLALQYVPI----EDFHQYSIDEFFMDIT 121
Query: 128 DAAEAMLAETPPE 140
D+ + A P E
Sbjct: 122 DSIH-LFARNPNE 133
>UNIPROTKB|P04152 [details] [associations]
symbol:umuC species:83333 "Escherichia coli K-12"
[GO:0016021 "integral to membrane" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEP] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IMP] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0009432 "SOS response" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0016021 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003684 GO:GO:0000012 GO:GO:0009432
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 InterPro:IPR025188
Pfam:PF13438 EMBL:M10107 EMBL:M13387 PIR:E64864 RefSeq:NP_415702.1
RefSeq:YP_489451.1 ProteinModelPortal:P04152 SMR:P04152
DIP:DIP-11090N IntAct:P04152 PRIDE:P04152
EnsemblBacteria:EBESCT00000002958 EnsemblBacteria:EBESCT00000014512
GeneID:12932822 GeneID:946359 KEGG:ecj:Y75_p1156 KEGG:eco:b1184
PATRIC:32117614 EchoBASE:EB1049 EcoGene:EG11056
HOGENOM:HOG000252172 KO:K03502 OMA:SPRYTTQ ProtClustDB:PRK03609
BioCyc:EcoCyc:EG11056-MONOMER BioCyc:ECOL316407:JW1173-MONOMER
BioCyc:MetaCyc:EG11056-MONOMER Genevestigator:P04152 Uniprot:P04152
Length = 422
Score = 101 (40.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT---VPFSSV---KGLLDSLPI 247
E+R VL+ T T GIA K LAKLA+ K Q+ T V S++ + L+ +LP+
Sbjct: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDL 273
+ +G ++ L + +G+ TV DL
Sbjct: 182 DDVWGIGRRISKKL-DAMGIKTVLDL 206
Score = 87 (35.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
+ A D++ FY E +P L G P V+ N+ G +IA EA+ GVK +
Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFK 57
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLT 127
K++ + +V ++ Y + + V+S L R E SIDE + DLT
Sbjct: 58 QKDLFRRCGVVCF-----SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT 108
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 588 569 0.00079 120 3 11 23 0.45 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 98
No. of states in DFA: 620 (66 KB)
Total size of DFA: 328 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.20u 0.11s 52.31t Elapsed: 00:00:02
Total cpu time: 52.23u 0.12s 52.35t Elapsed: 00:00:02
Start: Fri May 10 21:35:26 2013 End: Fri May 10 21:35:28 2013