Query 007824
Match_columns 588
No_of_seqs 362 out of 1939
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecq_A DNA polymerase ETA; tra 100.0 3.3E-78 1.1E-82 655.3 33.7 412 9-438 7-434 (435)
2 4dez_A POL IV 1, DNA polymeras 100.0 9E-77 3.1E-81 629.6 25.4 338 11-439 2-346 (356)
3 3osn_A DNA polymerase IOTA; ho 100.0 1.1E-75 3.7E-80 632.2 33.7 382 7-441 23-418 (420)
4 1jx4_A DNA polymerase IV (fami 100.0 1.1E-74 3.8E-79 612.7 32.5 343 12-446 1-349 (352)
5 3bq0_A POL IV, DBH, DNA polyme 100.0 2.6E-74 8.8E-79 610.4 30.6 343 12-446 1-351 (354)
6 4f4y_A POL IV, DNA polymerase 100.0 3.7E-74 1.3E-78 609.9 31.3 342 13-444 2-349 (362)
7 3mfi_A DNA polymerase ETA; DNA 100.0 6.4E-74 2.2E-78 631.4 33.8 400 9-440 28-517 (520)
8 3gqc_A DNA repair protein REV1 100.0 2.2E-73 7.5E-78 623.2 31.9 352 9-440 85-499 (504)
9 3pzp_A DNA polymerase kappa; D 100.0 1.8E-72 6.2E-77 620.5 33.8 392 9-440 87-509 (517)
10 1t94_A Polymerase (DNA directe 100.0 1.5E-72 5.2E-77 615.6 25.9 392 9-440 31-453 (459)
11 2aq4_A DNA repair protein REV1 100.0 1.1E-69 3.7E-74 588.9 28.2 348 9-438 49-433 (434)
12 1im4_A DBH; DNA polymerase PAL 100.0 3.2E-59 1.1E-63 462.5 21.5 215 10-283 4-221 (221)
13 1unn_C POL IV, DNA polymerase 98.9 1.5E-09 5.3E-14 95.6 5.5 98 313-440 6-107 (115)
14 1wcn_A Transcription elongatio 95.4 0.0072 2.4E-07 48.0 2.6 51 247-298 9-61 (70)
15 2a1j_A DNA repair endonuclease 95.3 0.024 8.1E-07 43.9 5.3 51 247-299 6-57 (63)
16 3bqs_A Uncharacterized protein 93.4 0.034 1.2E-06 46.6 2.3 35 246-281 5-39 (93)
17 3mab_A Uncharacterized protein 92.8 0.061 2.1E-06 45.0 3.1 34 246-280 5-38 (93)
18 1z00_B DNA repair endonuclease 92.5 0.091 3.1E-06 43.1 3.7 50 247-298 20-70 (84)
19 1z3e_B DNA-directed RNA polyme 91.9 0.15 5E-06 40.7 4.1 53 244-298 8-62 (73)
20 1b22_A DNA repair protein RAD5 91.6 0.097 3.3E-06 45.5 3.0 55 244-299 22-80 (114)
21 2a1j_B DNA excision repair pro 89.3 0.41 1.4E-05 39.4 4.8 50 247-298 34-85 (91)
22 1qw2_A Conserved hypothetical 89.0 0.16 5.6E-06 42.8 2.1 27 50-76 74-100 (102)
23 3gfk_B DNA-directed RNA polyme 88.6 0.3 1E-05 39.5 3.2 53 242-296 13-67 (79)
24 1kft_A UVRC, excinuclease ABC 88.1 0.24 8.1E-06 39.6 2.4 49 245-295 24-74 (78)
25 3k4g_A DNA-directed RNA polyme 88.0 0.4 1.4E-05 39.4 3.7 53 244-298 11-65 (86)
26 1z00_A DNA excision repair pro 87.2 0.48 1.6E-05 38.8 3.8 50 247-298 21-72 (89)
27 2kz3_A Putative uncharacterize 84.3 2.5 8.5E-05 34.4 6.6 44 244-288 3-46 (83)
28 1vq8_Y 50S ribosomal protein L 84.2 0.2 6.8E-06 49.3 0.0 50 245-295 15-66 (241)
29 1ci4_A Protein (barrier-TO-aut 83.9 0.54 1.9E-05 38.6 2.5 32 242-274 15-46 (89)
30 2nrt_A Uvrabc system protein C 83.1 0.97 3.3E-05 43.7 4.3 50 245-296 168-218 (220)
31 1coo_A RNA polymerase alpha su 82.2 0.51 1.8E-05 39.7 1.8 53 244-298 23-77 (98)
32 1pzn_A RAD51, DNA repair and r 81.7 1.2 4.2E-05 45.9 4.8 54 244-298 34-89 (349)
33 2i1q_A DNA repair and recombin 78.7 1.2 4.2E-05 44.9 3.6 53 245-298 3-57 (322)
34 3im1_A Protein SNU246, PRE-mRN 78.1 2.4 8.1E-05 43.3 5.5 61 244-305 156-218 (328)
35 2va8_A SSO2462, SKI2-type heli 77.5 0.95 3.2E-05 51.2 2.6 52 245-298 657-708 (715)
36 1gm5_A RECG; helicase, replica 73.5 1.7 5.9E-05 49.8 3.3 31 245-276 115-145 (780)
37 2q0z_X Protein Pro2281; SEC63, 72.9 3.5 0.00012 42.3 5.2 57 245-302 161-219 (339)
38 2fmp_A DNA polymerase beta; nu 72.1 1.6 5.5E-05 44.9 2.4 28 248-276 101-128 (335)
39 1x2i_A HEF helicase/nuclease; 71.5 3.5 0.00012 32.0 3.7 49 247-297 16-66 (75)
40 2p6r_A Afuhel308 helicase; pro 71.1 1.5 5.1E-05 49.5 2.0 52 245-298 632-683 (702)
41 2z43_A DNA repair and recombin 68.4 1 3.6E-05 45.8 0.0 42 245-287 12-53 (324)
42 2bcq_A DNA polymerase lambda; 67.5 2.3 7.9E-05 43.7 2.4 28 248-276 99-126 (335)
43 2zj8_A DNA helicase, putative 66.4 3.3 0.00011 46.7 3.7 40 244-284 645-684 (720)
44 2duy_A Competence protein come 66.1 4 0.00014 32.0 3.1 30 247-276 29-58 (75)
45 2ihm_A POL MU, DNA polymerase 65.4 2.9 9.8E-05 43.4 2.6 27 248-275 105-131 (360)
46 3sei_A Caskin-1; SAM domain, p 64.7 15 0.0005 33.1 6.9 76 201-288 48-123 (149)
47 1jms_A Terminal deoxynucleotid 63.4 3.3 0.00011 43.4 2.6 26 249-275 125-150 (381)
48 1ixr_A Holliday junction DNA h 62.7 3 0.0001 39.3 2.0 54 247-300 74-130 (191)
49 3lda_A DNA repair protein RAD5 62.6 6.1 0.00021 41.5 4.6 57 241-298 77-137 (400)
50 1dgs_A DNA ligase; AMP complex 59.9 6.7 0.00023 44.0 4.5 51 246-296 442-494 (667)
51 2owo_A DNA ligase; protein-DNA 59.9 7.7 0.00026 43.5 4.9 51 245-295 446-498 (671)
52 2bgw_A XPF endonuclease; hydro 55.9 8.7 0.0003 36.6 4.0 50 247-298 164-215 (219)
53 1cuk_A RUVA protein; DNA repai 55.8 4.3 0.00015 38.7 1.7 54 247-300 75-131 (203)
54 1u9l_A Transcription elongatio 48.3 14 0.00046 28.9 3.2 47 250-297 11-59 (70)
55 3c65_A Uvrabc system protein C 47.7 3.9 0.00013 39.6 0.0 49 244-294 172-221 (226)
56 4gfj_A Topoisomerase V; helix- 46.5 15 0.00053 38.4 4.2 49 247-300 470-518 (685)
57 1wwu_A Hypothetical protein FL 46.5 19 0.00066 30.0 4.0 52 236-298 27-78 (99)
58 2e8m_A Epidermal growth factor 46.0 17 0.00059 30.3 3.6 51 236-298 37-87 (99)
59 1v5w_A DMC1, meiotic recombina 45.2 4.5 0.00015 41.4 0.0 41 246-287 26-68 (343)
60 4glx_A DNA ligase; inhibitor, 43.3 21 0.00071 39.4 4.9 48 249-297 450-500 (586)
61 4f92_B U5 small nuclear ribonu 39.9 18 0.00062 45.2 4.2 57 245-302 1557-1615(1724)
62 3tvk_A DGC, diguanylate cyclas 38.8 49 0.0017 30.3 6.1 24 190-213 99-130 (179)
63 3arc_U Photosystem II 12 kDa e 37.2 23 0.00078 29.5 3.1 30 247-276 28-57 (97)
64 2rhf_A DNA helicase RECQ; HRDC 36.8 45 0.0015 26.0 4.8 49 192-257 11-59 (77)
65 2w9m_A Polymerase X; SAXS, DNA 36.8 13 0.00045 40.9 2.1 28 247-275 99-126 (578)
66 3b0x_A DNA polymerase beta fam 36.0 15 0.00051 40.4 2.4 79 210-302 100-179 (575)
67 3b0x_A DNA polymerase beta fam 35.2 16 0.00054 40.2 2.4 29 248-276 96-124 (575)
68 2ztd_A Holliday junction ATP-d 33.7 19 0.00067 34.3 2.5 52 250-301 93-147 (212)
69 1s5l_U Photosystem II 12 kDa e 33.2 29 0.001 30.6 3.3 28 249-277 67-95 (134)
70 3vdp_A Recombination protein R 31.5 25 0.00087 33.4 2.8 16 247-262 28-43 (212)
71 3r8n_M 30S ribosomal protein S 29.6 50 0.0017 28.3 4.1 28 247-274 18-48 (114)
72 3u5c_S 40S ribosomal protein S 28.1 56 0.0019 29.2 4.3 31 245-275 30-63 (146)
73 1wud_A ATP-dependent DNA helic 27.9 69 0.0024 25.8 4.5 49 191-256 18-66 (89)
74 2kv2_A Bloom syndrome protein; 25.8 82 0.0028 25.0 4.6 48 192-256 13-60 (85)
75 3hva_A Protein FIMX; ggdef dig 25.4 1.7E+02 0.0058 25.4 7.3 24 190-213 110-141 (177)
76 2bcq_A DNA polymerase lambda; 25.1 42 0.0014 34.2 3.4 53 247-303 59-120 (335)
77 2xzm_M RPS18E; ribosome, trans 24.8 57 0.002 29.5 3.8 30 246-275 31-63 (155)
78 2e1f_A Werner syndrome ATP-dep 24.2 83 0.0028 26.2 4.5 48 192-256 21-68 (103)
79 2edu_A Kinesin-like protein KI 23.8 39 0.0014 27.7 2.4 29 248-276 43-75 (98)
80 3iz6_M 40S ribosomal protein S 23.8 63 0.0022 29.1 3.8 29 247-275 30-61 (152)
81 1vdd_A Recombination protein R 23.2 26 0.00088 33.7 1.2 28 247-282 14-41 (228)
82 2vqe_M 30S ribosomal protein S 22.5 55 0.0019 28.5 3.1 28 247-274 19-49 (126)
83 3j20_O 30S ribosomal protein S 20.3 62 0.0021 29.0 3.0 29 247-275 25-56 (148)
84 3lu0_A DNA-directed RNA polyme 20.3 22 0.00074 36.3 0.0 48 245-294 255-304 (329)
No 1
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=3.3e-78 Score=655.29 Aligned_cols=412 Identities=43% Similarity=0.705 Sum_probs=337.5
Q ss_pred CCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCC
Q 007824 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA 88 (588)
Q Consensus 9 ~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~ 88 (588)
.+.|+|+||||||||||||++++|+|+++||||++++.+++|+|+||||+||++||++||++.+|+++||++++++++..
T Consensus 7 ~~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~~g~viA~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~~ 86 (435)
T 4ecq_A 7 GQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRES 86 (435)
T ss_dssp SCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTTTCEEEEECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCEE
T ss_pred CCCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCCCCeEEEeCHHHHHhCCCCCCcHHHHHHhCCCeEEeccccc
Confidence 56799999999999999999999999999999999876667999999999999999999999999999999999987655
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhh-hhcccCccC----CCC
Q 007824 89 RGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK-SHILGLESK----DGN 163 (588)
Q Consensus 89 ~~~~d~~~Y~~~S~~v~~iL~~~~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~-~~l~g~~~~----~~~ 163 (588)
++++||+.|+++|++|++||.+|..||+|||||+|||||++....+.+...... +..... +++-|.+.. .+.
T Consensus 87 ~~~~~~~~Y~~~S~~i~~il~~~~~vE~~SiDEafLDlT~~~~~~l~~l~g~~~---~~~~~~~~~~~g~~~~~~~~~~~ 163 (435)
T 4ecq_A 87 RGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPI---SADLLPSTYIEGLPQGPTTAEET 163 (435)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHSCEEEEETTEEEEECHHHHHHHHHHHTTCCC---CGGGCTTEEETTCSCCCC-----
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCceeecccceEEEECccchhhcchhcccccc---ccccccccccccCCCcccccccc
Confidence 666899999999999999999998999999999999999987543211000000 000000 000010000 000
Q ss_pred Cch-----hhhhhhhhc---cCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCc
Q 007824 164 DSK-----ATVKEWLCR---CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235 (588)
Q Consensus 164 ~~~-----~~~~~~~~~---~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~ 235 (588)
... ..+.+|++. ++.+|.+..+..|+.+|++||++|++++|||||||||+||++||||++++||+|++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~ 243 (435)
T 4ecq_A 164 VQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH 243 (435)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCG
T ss_pred cchhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEeh
Confidence 011 134556542 456788888999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHhcccCCCCCCCCCcHHHHHH-HHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCccc
Q 007824 236 SSVKGLLDSLPIKKMKQLGGKLGTS-LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314 (588)
Q Consensus 236 ~~~~~~L~~lPI~~l~GiG~k~~~~-L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi 314 (588)
+++.+||+++||++|||||++++++ |. .+||+|++||+++|+..|+++||...|.+||+.|+|+|+++|.+..++|||
T Consensus 244 ~~~~~~L~~lpv~~l~GiG~~~~~~lL~-~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi 322 (435)
T 4ecq_A 244 GSVPQLFSQMPIRKIRSLGGKLGASVIE-ILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTI 322 (435)
T ss_dssp GGHHHHHHTCBGGGSTTCSSHHHHHHHH-HHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCE
T ss_pred hHHHHHHhhCCHHHhcCCCHHHHHHHHH-HcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCee
Confidence 9999999999999999999999887 66 899999999999999999999995579999999999999999988889999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCc-hhH
Q 007824 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGT-AKI 393 (588)
Q Consensus 315 ~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T-~~i 393 (588)
+++++|+.+.++++.+++..+|..|+++|+.||+++..++++.|++|+|++++.++.. ....+++++|+.++ .+|
T Consensus 323 ~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~----~~~~~R~~~l~~~~~~~i 398 (435)
T 4ecq_A 323 GCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKR----LSSLRRCCALTRYDAHKM 398 (435)
T ss_dssp EEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCS----SCSEEEEEECCSCCHHHH
T ss_pred eeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCC----CceeEEeccCCCCCHHHH
Confidence 9999999633588999999999999999999999864456899999999999976432 23457889998553 478
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCC-CCCceeEEeeccCCccc
Q 007824 394 QEDTFNLFQAGLREFLGSFGVKTQGSHY-SGWRITALSVSASKIVP 438 (588)
Q Consensus 394 ~~~A~~Ll~~i~r~~~~~~~y~kaGv~~-~~~~Ir~lgvs~s~L~~ 438 (588)
.++|..||++.|+ . |.+. -..+||.|||++++|.+
T Consensus 399 ~~~a~~L~~~~~~-------~---~~~~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 399 SHDAFTVIKNCNT-------S---GIQTEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp HHHHHHHHGGGCC-------C---SSTTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhh-------c---cccccCCCCeeEEEEEEeeccc
Confidence 8888888887321 1 1100 02379999999999875
No 2
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=9e-77 Score=629.64 Aligned_cols=338 Identities=26% Similarity=0.362 Sum_probs=219.2
Q ss_pred CCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCC
Q 007824 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNE--WKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA 88 (588)
Q Consensus 11 ~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~--~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~ 88 (588)
.|+|+||||||||||||++++|+|+|+||||+++++ .++|+|+|||||||++||++|||+++|+++||++++++
T Consensus 2 ~R~I~hiD~d~FyasvE~~~~P~L~~kPv~V~~~~d~~~~~g~v~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~---- 77 (356)
T 4dez_A 2 TKWVLHVDLDQFLASVELRRRPDLRGQPVIVGGSGDPSEPRKVVTCASYEAREFGVHAGMPLRAAARRCPDATFLP---- 77 (356)
T ss_dssp CEEEEEEEETTHHHHHHHHHCGGGTTSCEEEEEC------CCEEEEECHHHHTTTCCTTSBHHHHHHHCTTCEEEE----
T ss_pred ceEEEEEcCCcHHHHHHhhhCccccCCeEEEEeCCCCCCCceEEEEECHHHHHhCCCCCCcHHHHHHhCCCeEEEC----
Confidence 689999999999999999999999999999999876 34689999999999999999999999999999999985
Q ss_pred CCCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchh
Q 007824 89 RGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 167 (588)
Q Consensus 89 ~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 167 (588)
+|+++|+++|++|+++|.+| |.||+|||||+|||+|+... +
T Consensus 78 ---~~~~~Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~~------------------------~----------- 119 (356)
T 4dez_A 78 ---SDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPDE------------------------S----------- 119 (356)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCTT------------------------C-----------
T ss_pred ---CcHHHHHHHHHHHHHHhhhcCCceeecCcchhheecccccC------------------------C-----------
Confidence 89999999999999999999 79999999999999997531 0
Q ss_pred hhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCC
Q 007824 168 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247 (588)
Q Consensus 168 ~~~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI 247 (588)
.+..++++||++|++++|+|||||||+||+|||||++++||+|++++.++++.+||+++||
T Consensus 120 -------------------~~~~~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~~~~~~L~~lpv 180 (356)
T 4dez_A 120 -------------------DPVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEANWMTVMGDRPP 180 (356)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTTTHHHHHTTSCG
T ss_pred -------------------CHHHHHHHHHHHHHHHhCCccccchhccHHHHHHHHHHhhhcCcccccchhhhhhhhcCcH
Confidence 0245799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccc-cCCcccccccccCCCCCC
Q 007824 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRAL 326 (588)
Q Consensus 248 ~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~-~~pKsi~~s~sF~~~~~i 326 (588)
++|||||++++++|+ .+||+|++||+++|+..|+++||++.|.++|+.++|+|+++|.+. ..+|||+.++||+. ++
T Consensus 181 ~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~tf~~--~~ 257 (356)
T 4dez_A 181 DALWGVGPKTTKKLA-AMGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVTFPQ--DL 257 (356)
T ss_dssp GGSTTCCHHHHHHHH-HTTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCC--------------------
T ss_pred HHHcCCchhHHHHHH-HcCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCcccccccccccccccccccCCC--cC
Confidence 999999999999998 899999999999999999999997679999999999999999775 45799999999995 49
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCch---hHHHHHHHHHHH
Q 007824 327 KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA---KIQEDTFNLFQA 403 (588)
Q Consensus 327 ~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T~---~i~~~A~~Ll~~ 403 (588)
++.+++..+|..|++++++||+++ ++.|++|+|++++.+|. ..+++.+|+.||+ +|++.|..||++
T Consensus 258 ~~~~~l~~~l~~la~~~~~rLr~~----~~~~~~l~v~ir~~~f~-------~~t~~~~l~~pt~d~~~i~~~a~~ll~~ 326 (356)
T 4dez_A 258 TERREMDSAVRDLALQTLAEIVEQ----GRIVTRVAVTVRTSTFY-------TRTKIRKLPAPSTDAGQIVDTALAVLDQ 326 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHc----CCceeEEEEEEEeCCCe-------EEEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987 99999999999988763 3467788888876 578888888877
Q ss_pred HHHHhhccccccccCCCCCCCceeEEeeccCCcccC
Q 007824 404 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 439 (588)
Q Consensus 404 i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~ 439 (588)
++. +.+||++||++++|.+.
T Consensus 327 ~~~----------------~~~vRliGV~ls~l~d~ 346 (356)
T 4dez_A 327 FEL----------------DRPVRLLGVRLELAMDD 346 (356)
T ss_dssp ------------------------------------
T ss_pred ccC----------------CCCEEEEEEEECCCCCC
Confidence 432 24899999999999864
No 3
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=1.1e-75 Score=632.24 Aligned_cols=382 Identities=31% Similarity=0.451 Sum_probs=320.0
Q ss_pred CCCCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEcc
Q 007824 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP 86 (588)
Q Consensus 7 ~~~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~ 86 (588)
..++.|+|+||||||||||||++++|+|+++||||++ +|+|+||||+||++||++||++.+|+++||++++++
T Consensus 23 ~~~~~r~i~hiD~d~FyASvE~~~~P~L~~~Pv~V~~-----~g~V~a~syeAR~~GV~~gm~~~~A~~lcP~lv~v~-- 95 (420)
T 3osn_A 23 PNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN-- 95 (420)
T ss_dssp --CCCCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEE-----TTEEEEECHHHHTTTCCTTEEHHHHHHHCTTCEEEE--
T ss_pred CCCCCCEEEEEecCcHHHHHHHHhCcCccCCeEEEcC-----CCEEEECCHHHHHcCCCCCCcHHHHHHhCccccccC--
Confidence 3456899999999999999999999999999999986 379999999999999999999999999999998885
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCc
Q 007824 87 VARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS 165 (588)
Q Consensus 87 ~~~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 165 (588)
.+||+.|+++|++|++||.+| |.||++||||+|||+|++....+.+.++..++ ......|+||....
T Consensus 96 ----~~~~~~Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~~~~~~~---~~~~~g~l~g~~~~----- 163 (420)
T 3osn_A 96 ----GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELS---AVTVSGHVYNNQSI----- 163 (420)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSSGG---GCCCCSEEGGGCCC-----
T ss_pred ----CCCHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhcccccccccc---cccccccccccccc-----
Confidence 249999999999999999998 79999999999999999876544333322110 00011245653210
Q ss_pred hhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccC
Q 007824 166 KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245 (588)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~l 245 (588)
+..+|.+..+..+..+|++||++|++++|||||||||+||+|||||++++||+|++++.++++.+||+++
T Consensus 164 ----------~~~~~~~~~l~~~~~la~~Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~~~~~~L~~L 233 (420)
T 3osn_A 164 ----------NLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSL 233 (420)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHHHC
T ss_pred ----------ccccchhhcchHHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecHHHHHHhhccC
Confidence 1124556667778899999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCcccccccccCCCC
Q 007824 246 P-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 324 (588)
Q Consensus 246 P-I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi~~s~sF~~~~ 324 (588)
| |++|||||++++++|. .+||+|++||+++|+..|+++||+..|.+||++++|+|+++|.+..++|||+++++|+.
T Consensus 234 ppv~~l~GIG~~t~~~L~-~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~~-- 310 (420)
T 3osn_A 234 NHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK-- 310 (420)
T ss_dssp SSGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEECSS--
T ss_pred ccHHHccCCCHHHHHHHH-HhCCCcHHHHhhCCHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeCCC--
Confidence 7 9999999999999998 89999999999999999999999767999999999999999998888999999999962
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCC---------ch---h
Q 007824 325 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYG---------TA---K 392 (588)
Q Consensus 325 ~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~---------T~---~ 392 (588)
+.+.+++..+|.+|+++|+.||+++ ++.|++|+|++++++.. ......+++++++.+ |+ +
T Consensus 311 -~~~~~~~~~~l~~La~~l~~rLr~~----~~~~~tv~l~ir~~~~~---~~~~~~sr~~~l~~~~~~~l~~~~t~~~~~ 382 (420)
T 3osn_A 311 -CSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRLIIRRYSSE---KHYGRESRQCPIPSHVIQKLGTGNYDVMTP 382 (420)
T ss_dssp -CCCSSSHHHHHHHHHHHHHHHHHHH----CSCEEEEEEEEEEECSS---CCCCCEEEEEECCTTTCCC-----CTTHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHc----CCcccEEEEEEEeCCCC---CCCceeEEEEECCCccccccccCCCchHHH
Confidence 7788999999999999999999987 99999999999965321 111234788888765 44 6
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCCCCceeEEeeccCCcccCCc
Q 007824 393 IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLS 441 (588)
Q Consensus 393 i~~~A~~Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~~~ 441 (588)
|++.|.+||+++|.. ..++.||+|||+++||.+.++
T Consensus 383 i~~~a~~Lf~~~~~~-------------~~~~~iRllgv~~~~l~~~~~ 418 (420)
T 3osn_A 383 MVDILMKLFRNMVNV-------------KMPFHLTLLSVCFCNLKALNT 418 (420)
T ss_dssp HHHHHHHHHHHHSCS-------------SSCCEEEEEEEEEEEEC----
T ss_pred HHHHHHHHHHHhhcc-------------cCCcceeEEEEEEeCcccCcc
Confidence 888899999884321 023469999999999987543
No 4
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=1.1e-74 Score=612.70 Aligned_cols=343 Identities=27% Similarity=0.403 Sum_probs=303.5
Q ss_pred CEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCCC
Q 007824 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNE--WKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVAR 89 (588)
Q Consensus 12 r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~--~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~~ 89 (588)
|+|+||||||||||||++++|+|+++||||++... .++|+|+||||+||++||++||++.+|+++||++++++
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~V~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~----- 75 (352)
T 1jx4_A 1 MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLP----- 75 (352)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEEECSSSTTCEEEEEECHHHHTTTCCTTSBHHHHHHHCTTSEEEE-----
T ss_pred CEEEEEecCcHHHHHHhHhCccccCCcEEEEeCCCCCCCCeEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEEC-----
Confidence 68999999999999999999999999999995321 24689999999999999999999999999999999985
Q ss_pred CCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchhh
Q 007824 90 GKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 168 (588)
Q Consensus 90 ~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 168 (588)
+|++.|+++|++|++|+.+| |.||++||||+|||+|++.+ +||
T Consensus 76 --~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~----------------------~~~------------ 119 (352)
T 1jx4_A 76 --MRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVR----------------------DYR------------ 119 (352)
T ss_dssp --CCHHHHHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCS----------------------SHH------------
T ss_pred --CCHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEeccCccc----------------------ccc------------
Confidence 79999999999999999999 79999999999999999752 222
Q ss_pred hhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCC
Q 007824 169 VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248 (588)
Q Consensus 169 ~~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~ 248 (588)
.+..++++||++|++++|+|||||||+||++||||++++||+|++++.++++.+||+++||+
T Consensus 120 ------------------~~~~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~ 181 (352)
T 1jx4_A 120 ------------------EAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIA 181 (352)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHHHHHHHHHHSBGG
T ss_pred ------------------cHHHHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHHHHHHHHHhCCCC
Confidence 23578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCcccccccccCCCCCCCC
Q 007824 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKT 328 (588)
Q Consensus 249 ~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi~~s~sF~~~~~i~~ 328 (588)
+|||||++++++|. .+||+|++||+++|+..|+++||+..|.++|+.++|+|+++|.+.. +|||+.+++|+. ++++
T Consensus 182 ~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~--~~~~ 257 (352)
T 1jx4_A 182 DVPGIGNITAEKLK-KLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMKR--NSRN 257 (352)
T ss_dssp GSTTCCHHHHHHHH-TTTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEEE--EECC
T ss_pred cccccCHHHHHHHH-HcCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecCC--CCCC
Confidence 99999999999998 8999999999999999999999974499999999999999999888 999999999985 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCch---hHHHHHHHHHHHHH
Q 007824 329 VASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA---KIQEDTFNLFQAGL 405 (588)
Q Consensus 329 ~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T~---~i~~~A~~Ll~~i~ 405 (588)
.+++..+|..|+++|+.||++ . .+++|+|++++.++. ..+++.+++.+|+ .|.+ +.++|++++
T Consensus 258 ~~~l~~~l~~l~~~l~~rL~~-----~-~~~~v~l~l~~~~~~-------~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~ 323 (352)
T 1jx4_A 258 LEEIKPYLFRAIEESYYKLDK-----R-IPKAIHVVAVTEDLD-------IVSRGRTFPHGISKETAYSE-SVKLLQKIL 323 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----C-CEEEEEEEEEETTSC-------EEEEEEECSSCCCHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----h-cCCEEEEEEEECCCC-------cceeEEecCCCCCCHHHHHH-HHHHHHHHH
Confidence 999999999999999999996 4 899999999998764 2467788887775 6788 888888865
Q ss_pred HHhhccccccccCCCCCCCceeEEeeccCCcccCCccchhh
Q 007824 406 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSI 446 (588)
Q Consensus 406 r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~~~~~~sL 446 (588)
.. .+.+++.+||++++|.+. ..|.+|
T Consensus 324 ~~--------------~~~~vr~lgv~~~~l~~~-~~q~~L 349 (352)
T 1jx4_A 324 EE--------------DERKIRRIGVRFSKFIEA-IGLDKF 349 (352)
T ss_dssp HH--------------CCSCEEEEEEEEEEEC---------
T ss_pred hc--------------CCCCEEEEEEEEeCCCCc-cccccc
Confidence 41 134899999999999875 344444
No 5
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=2.6e-74 Score=610.36 Aligned_cols=343 Identities=25% Similarity=0.391 Sum_probs=301.9
Q ss_pred CEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCCC
Q 007824 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNE--WKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVAR 89 (588)
Q Consensus 12 r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~--~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~~ 89 (588)
|+|+||||||||||||++++|+|+|+||||++..+ .++|+|+||||+||++||++||++.+|+++||++++++
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~V~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~----- 75 (354)
T 3bq0_A 1 MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP----- 75 (354)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECCC---CCCEEEEECHHHHHTTCCTTCBHHHHHHHCTTCEEEE-----
T ss_pred CEEEEEecChHHHHHHHHhCccccCCcEEEEcCCCCCCCCeEEEECCHHHHHhCCCCCCcHHHHHHHCCCeEEEC-----
Confidence 68999999999999999999999999999998211 23689999999999999999999999999999999985
Q ss_pred CCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchhh
Q 007824 90 GKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 168 (588)
Q Consensus 90 ~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 168 (588)
+|++.|+++|++|++|+.+| |.||++||||+|||+|++.+ .+||
T Consensus 76 --~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~---------------------~~~~------------ 120 (354)
T 3bq0_A 76 --MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVE---------------------GNFE------------ 120 (354)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTT---------------------TCHH------------
T ss_pred --CCHHHHHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchh---------------------hccC------------
Confidence 79999999999999999999 78999999999999999752 0222
Q ss_pred hhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCC
Q 007824 169 VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248 (588)
Q Consensus 169 ~~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~ 248 (588)
.+..++++||++|++++|+|||||||+||++||||++++||+|++++.++++.+||+++||+
T Consensus 121 ------------------~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~ 182 (354)
T 3bq0_A 121 ------------------NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDID 182 (354)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGGGHHHHHHHCBST
T ss_pred ------------------CHHHHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHHHHHHHHHhCCcc
Confidence 23568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCcccccccccCCCCCCCC
Q 007824 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKT 328 (588)
Q Consensus 249 ~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi~~s~sF~~~~~i~~ 328 (588)
+|||||++++++|+ .+||+|++||+++|+..|+++||+..|.++|+.++|+|+++|.+.. +|||+.+++|+. ++++
T Consensus 183 ~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~--~~~~ 258 (354)
T 3bq0_A 183 EIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLPY--NTRD 258 (354)
T ss_dssp TSTTCCHHHHHHHT-TTTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEEE--EECC
T ss_pred cccCcCHHHHHHHH-HcCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCCC--CCCC
Confidence 99999999999997 8999999999999999999999974499999999999999998888 999999999985 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCch---hHHHHHHHHHHHHH
Q 007824 329 VASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA---KIQEDTFNLFQAGL 405 (588)
Q Consensus 329 ~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T~---~i~~~A~~Ll~~i~ 405 (588)
.+++..+|..|+++|+.||+ . .+++|+|++++.++. ..+++.+++.+|+ .|.+ +..+|+.++
T Consensus 259 ~~~l~~~l~~l~~~l~~rL~------~-~~~~v~l~~~~~~~~-------~~~~~~~l~~pt~~~~~i~~-~~~ll~~~~ 323 (354)
T 3bq0_A 259 VKVILPYLKKAINEAYNKVN------G-IPMRITVIAIMEDLD-------ILSKGKKFKHGISIDNAYKV-AEDLLRELL 323 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTTS------S-EEEEEEEEEEETTSC-------EEEEEEECSSCCCHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH------h-hCCEEEEEEEeCCCC-------cceEEEECCCccCCHHHHHH-HHHHHHHHh
Confidence 99999999999999999997 3 899999999998764 2467788887775 5777 888887742
Q ss_pred HHhhccccccccCCCCCCC-c-eeEEeeccCCcccCCccchhh
Q 007824 406 REFLGSFGVKTQGSHYSGW-R-ITALSVSASKIVPVLSGTCSI 446 (588)
Q Consensus 406 r~~~~~~~y~kaGv~~~~~-~-Ir~lgvs~s~L~~~~~~~~sL 446 (588)
. .+. + |+.+||.+++|.+....|.+|
T Consensus 324 ~---------------~~~~~~vr~lgv~~~~l~~~~~~q~~L 351 (354)
T 3bq0_A 324 V---------------RDKRRNVRRIGVKLDNIIINKTNLSDF 351 (354)
T ss_dssp T---------------SCSSCCEEEEEEEEEEEECC-------
T ss_pred c---------------cCCCCceEEEEEEEecCCCCCcccccc
Confidence 1 134 7 999999999998765445454
No 6
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=3.7e-74 Score=609.92 Aligned_cols=342 Identities=25% Similarity=0.391 Sum_probs=301.5
Q ss_pred EEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCCCC
Q 007824 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNE--WKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARG 90 (588)
Q Consensus 13 ~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~--~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~~~ 90 (588)
+|+||||||||||||++++|+|+++||||+++++ .++|+|+||||+||++||++|||+.+|+++||++++++
T Consensus 2 ~i~hiD~d~FyasvE~~~~P~L~~~Pv~V~~~~~~~~~~g~V~a~sy~Ar~~GV~~gm~~~~A~~lcP~l~~~~------ 75 (362)
T 4f4y_A 2 IVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP------ 75 (362)
T ss_dssp CEEEEECTTHHHHHHHHHCGGGTTSCEEEEEECSSSSSCEEEEEECHHHHHTTCCTTCBHHHHHHHCTTSEEEE------
T ss_pred EEEEEecCCHHHHHHhHhCccccCCeEEEecCCCCCCCCeEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEEC------
Confidence 6999999999999999999999999999998642 24689999999999999999999999999999999985
Q ss_pred CCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchhhh
Q 007824 91 KADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV 169 (588)
Q Consensus 91 ~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 169 (588)
+|++.|+++|++|+++|.+| |.||++||||+|||+|++.+. +||
T Consensus 76 -~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~---------------------~~~------------- 120 (362)
T 4f4y_A 76 -MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG---------------------NFE------------- 120 (362)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT---------------------CHH-------------
T ss_pred -CCHHHHHHHHHHHHHHHHHhCCCEEEecCceEEEecCCcccc---------------------ccC-------------
Confidence 89999999999999999999 789999999999999997520 222
Q ss_pred hhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCC
Q 007824 170 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249 (588)
Q Consensus 170 ~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~ 249 (588)
.+..++++||++|++++|+|||||||+||++||||++++||+|+++++++++.+||+++||++
T Consensus 121 -----------------~~~~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~ 183 (362)
T 4f4y_A 121 -----------------NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDE 183 (362)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTTTHHHHHHTCBSTT
T ss_pred -----------------CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHHHHHHHHHhCChhh
Confidence 135689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCcccccccccCCCCCCCCH
Q 007824 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTV 329 (588)
Q Consensus 250 l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi~~s~sF~~~~~i~~~ 329 (588)
|||||++++++|. .+||+|++||+++|+..|+++||.+.|.++|+.++|+|+++|.+..+ |||+.+++|+. ++++.
T Consensus 184 l~GiG~~~~~~L~-~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~~--~~~~~ 259 (362)
T 4f4y_A 184 IPGIGSVLARRLN-ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLPY--NTRDV 259 (362)
T ss_dssp STTCCSTTHHHHH-HTTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEEE--EECCH
T ss_pred ccCCCHHHHHHHH-HcCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecCC--CCCCH
Confidence 9999999999998 89999999999999999999999446999999999999999998888 99999999995 48999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCC--chhHHHHHHHHHHHHHHH
Q 007824 330 ASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYG--TAKIQEDTFNLFQAGLRE 407 (588)
Q Consensus 330 e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~--T~~i~~~A~~Ll~~i~r~ 407 (588)
+++..+|..|+++++.||+ . .|++|+|++++.++.. .+++.+++.| +..|++.|.+||+++++.
T Consensus 260 ~~l~~~l~~l~~~l~~rLr------~-~~~~v~l~i~~~~~~~-------~t~s~~l~~p~d~~~i~~~a~~ll~~~~~~ 325 (362)
T 4f4y_A 260 KVILPYLKKAINEAYNKVN------G-IPMRITVIAIMEDLDI-------LSKGKKFKHGISIDNAYKVAEDLLRELLVR 325 (362)
T ss_dssp HHHHHHHHHHHHHHHHHCS------S-EEEEEEEEEEETTSCE-------EEEEEECSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHH------h-CCCEEEEEEEECCCcE-------EEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998 3 8999999999987642 2556666654 336888999998885420
Q ss_pred hhccccccccCCCCCCCc-eeEEeeccCCcccCCccch
Q 007824 408 FLGSFGVKTQGSHYSGWR-ITALSVSASKIVPVLSGTC 444 (588)
Q Consensus 408 ~~~~~~y~kaGv~~~~~~-Ir~lgvs~s~L~~~~~~~~ 444 (588)
.+.+ +|.+||++++|.+....|.
T Consensus 326 --------------~~~~~vr~lGV~~~~L~~~~~~q~ 349 (362)
T 4f4y_A 326 --------------DKRRNVRRIGVKLDNIIINKTNLS 349 (362)
T ss_dssp --------------SCSCCEEEEEEEEEEEEC------
T ss_pred --------------cCCccEEEEEEEEeccccCCcccc
Confidence 1347 9999999999987554443
No 7
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=6.4e-74 Score=631.39 Aligned_cols=400 Identities=27% Similarity=0.389 Sum_probs=326.0
Q ss_pred CCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCC
Q 007824 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA 88 (588)
Q Consensus 9 ~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~ 88 (588)
++.|+|+||||||||||||++++|+|+++||||+|+ |+|+||||+||++||++||++++|+++||+++++||+++
T Consensus 28 ~p~r~I~hiD~d~FyAsvE~~~~p~l~~~Pv~v~~~-----~~via~sy~AR~~GI~~~~~~~~A~~~CP~l~~v~~~v~ 102 (520)
T 3mfi_A 28 SSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQW-----NSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVF 102 (520)
T ss_dssp STTCCEEEEEETTHHHHHHHHHTTCCTTSCEEEEET-----TEEEEECHHHHTTTCCTTCBHHHHHTTCTTCEEEECEEE
T ss_pred CCCCEEEEEecccHHHHHHHHhCccccCCcEEEecC-----CEEEEeCHHHHHcCCCCCCcHHHHHHhCccceEeeeeee
Confidence 678999999999999999999999999999999986 589999999999999999999999999999999875443
Q ss_pred ---------------------------CCCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCC
Q 007824 89 ---------------------------RGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE 140 (588)
Q Consensus 89 ---------------------------~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~ 140 (588)
++|++|+.|+++|++|++||.+| +.||+|||||+|||||+.....+......
T Consensus 103 ~~ge~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~il~~~~~~vE~~SIDEaflDlt~~~~~~l~~~~~~ 182 (520)
T 3mfi_A 103 KKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALAIFKWACDLVERASIDEVFLDLGRICFNMLMFDNEY 182 (520)
T ss_dssp ETTCSCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEECHHHHHHHHHHCSSC
T ss_pred ecccccccccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHHhCCCeEEeccceEEEEcCcchhhcccccccc
Confidence 33468999999999999999998 79999999999999999864332210000
Q ss_pred ----Cc---hhhhH---H------hhhhhcccCccCCCCCchhhhhhh------h----hccCccchhhhhhhHHHHHHH
Q 007824 141 ----SL---DEVDE---E------ALKSHILGLESKDGNDSKATVKEW------L----CRCDADHRDKLLACGVLIVTE 194 (588)
Q Consensus 141 ----~~---~~~~~---~------~~~~~l~g~~~~~~~~~~~~~~~~------~----~~~~~~~~~~ll~~g~~la~~ 194 (588)
.+ ..+.+ . .+..++.+.+. .+..| + .....+|+++++..+..+|++
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 254 (520)
T 3mfi_A 183 ELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPE--------KIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKG 254 (520)
T ss_dssp EEETTEEHHHHTHHHHHHHHHTCCCTTSEEECCCG--------GGGGCCCCSEECCTTCCCSCCSHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhcccccccccccccccccc--------chhcccccccccccccccccccccccccchHHHHHHH
Confidence 00 00000 0 00000000000 00000 0 012347889899889999999
Q ss_pred HHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhccc--CCCCCCCCCcHHHHHHHHHhh-CC---c
Q 007824 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS--LPIKKMKQLGGKLGTSLQNEL-GV---T 268 (588)
Q Consensus 195 Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~--lPI~~l~GiG~k~~~~L~~~l-GI---~ 268 (588)
||++|+++||||||||||+||+||||||+++||+|++++.++++.+||++ +||++|||||++++++|. .+ || +
T Consensus 255 IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~~~~~fL~~~~lPV~~l~GIG~~t~~~L~-~llGI~~~~ 333 (520)
T 3mfi_A 255 IRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELI-DVLDLPHEN 333 (520)
T ss_dssp HHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGGGHHHHHTSSSCCGGGSTTCSSHHHHHHH-HHTTCCSSS
T ss_pred HHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChHHHHHHhhccCCcHHHhcCCCHHHHHHHH-HhcCCCccc
Confidence 99999999999999999999999999999999999999999999999998 999999999999999998 67 99 6
Q ss_pred ch-----------hhhccCCHHHHHHHhCc------------chHHHHHHHHhcCCCcccccccCCcccccccccCCCCC
Q 007824 269 TV-----------GDLLKFSEDKLQESYGF------------NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 325 (588)
Q Consensus 269 Ti-----------gDLa~l~~~~L~~rfG~------------~~g~~l~~~a~G~d~~~v~~~~~pKsi~~s~sF~~~~~ 325 (588)
|+ +||++++...|+++||. +.|.++|++++|+|+++|.+..++|||+++++|+.+ +
T Consensus 334 ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~~~tf~~~-~ 412 (520)
T 3mfi_A 334 SIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGK-S 412 (520)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEEEEECCTT-T
T ss_pred chhhhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceeeEEEcCCC-C
Confidence 65 88888999999999994 469999999999999999998889999999999952 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhh--hcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCc--h---hHHHHHH
Q 007824 326 LKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGT--A---KIQEDTF 398 (588)
Q Consensus 326 i~~~e~l~~~L~~La~eL~~RLr~~l~--~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T--~---~i~~~A~ 398 (588)
+++.+++..+|..|+++|+.||++... .+++.|++|+|++++.+|. ..+++.+|+.+| + +|++.|.
T Consensus 413 i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~df~-------~~trs~~l~~pt~~~~~~~I~~~a~ 485 (520)
T 3mfi_A 413 CNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYE-------VYRKSGPVAYKGINFQSHELLKVGI 485 (520)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTTCC-------EEEEEEECCCCCGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCCCC-------cceEEEECCCCCccCCHHHHHHHHH
Confidence 899999999999999999999998511 1248999999999998764 246788888887 4 6889999
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCceeEEeeccCCcccCC
Q 007824 399 NLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 440 (588)
Q Consensus 399 ~Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~~ 440 (588)
+||+.++.. + .. ..+.+||+|||++++|.+..
T Consensus 486 ~Ll~~~~~~--~-~~-------~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 486 KFVTDLDIK--G-KN-------KSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp HHHHHHHHH--T-TT-------SSCSSCSEEEEEEEEEEEEE
T ss_pred HHHHHHhhh--c-cc-------ccCCceeEEEEEEeCCEecC
Confidence 999997754 0 00 02469999999999998654
No 8
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-73 Score=623.23 Aligned_cols=352 Identities=26% Similarity=0.396 Sum_probs=307.2
Q ss_pred CCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCC------------------------------------------
Q 007824 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNE------------------------------------------ 46 (588)
Q Consensus 9 ~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~------------------------------------------ 46 (588)
...|+|+||||||||||||++.+|+|+|+||||++...
T Consensus 85 ~~~r~I~HvDmd~FfaSve~~~~P~LrgkPvaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (504)
T 3gqc_A 85 RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENPDS 164 (504)
T ss_dssp --CCCEEEEEETTHHHHHHTTTCTTTTTSCEEECSSCSSCBCCCCTTBCHHHHHHHHHTTTTCC----------------
T ss_pred CCCcEEEEEeccchhhhhhhccCccccCCCeEEEecCCCCccccccccchhhhhhhhhhhhcccccccccccccccccch
Confidence 34799999999999999999999999999999985321
Q ss_pred -CCCcE--------EEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCCCCCCChHHHHHHHHHHHHHHhhc-CCeEE
Q 007824 47 -WKGGG--------LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCER 116 (588)
Q Consensus 47 -~~~g~--------Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~ 116 (588)
.++|+ |+||||+||++||++||++.+|+++||++++++ +||+.|+++|++|++||.+| |.||+
T Consensus 165 ~~~~Gv~av~s~s~V~aaSyeAR~~GVrsGMp~~~A~~lcP~livv~-------~d~~~Y~~~S~~i~~il~~~tp~VE~ 237 (504)
T 3gqc_A 165 AQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVP-------YDFHAYKEVAQTLYETLASYTHNIEA 237 (504)
T ss_dssp -----CGGGBCCCBCSEECHHHHTTTCCTTCBHHHHHHHCTTCEEEC-------CCHHHHHHHHHHHHHHHHTTCSCEEE
T ss_pred hhccccceeccCCEEEECCHHHHHcCCCCCCcHHHHHHhCCCcEEEC-------CCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 12355 889999999999999999999999999999884 89999999999999999998 79999
Q ss_pred eccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHH
Q 007824 117 ASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELR 196 (588)
Q Consensus 117 ~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~la~~Ir 196 (588)
+||||+|||+|++.. +||.. +..+|++||
T Consensus 238 ~SiDEafLDvtg~~~----------------------l~g~~-----------------------------~~~la~~Ir 266 (504)
T 3gqc_A 238 VSCDEALVDITEILA----------------------ETKLT-----------------------------PDEFANAVR 266 (504)
T ss_dssp EETTEEEEECHHHHH----------------------HHCCC-----------------------------HHHHHHHHH
T ss_pred ecCCeEEEeccchHh----------------------hcCCC-----------------------------HHHHHHHHH
Confidence 999999999999863 33311 246799999
Q ss_pred HHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 197 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 197 ~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
++|++++|||||||||+||+|||||++++||+|++++.++++.+||+++||++|||||++++++|. .+||+|++||+++
T Consensus 267 ~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~~~~~~L~~LPV~~l~GIG~~t~~kL~-~lGI~TigDLa~~ 345 (504)
T 3gqc_A 267 MEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKLA-SLGIKTCGDLQYM 345 (504)
T ss_dssp HHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGGGHHHHHHHSBGGGSTTCCHHHHHHHH-HTTCCBHHHHTTS
T ss_pred HHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHHHHHHHHhcCChhHhhCcCHHHHHHHH-HcCCCcHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred CHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Q 007824 277 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356 (588)
Q Consensus 277 ~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~ 356 (588)
|+..|+++||+..|.+||+.|+|+|+++|.+..++|||+.+++|+. ++++.+++..+|..|+++|+.||+++ ++
T Consensus 346 ~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~--d~~~~~~l~~~L~~La~~l~~rLr~~----~~ 419 (504)
T 3gqc_A 346 TMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI--RFTQPKEAEAFLLSLSEEIQRRLEAT----GM 419 (504)
T ss_dssp CHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSC--CCCSHHHHHHHHHHHHHHHHHHHHHT----TE
T ss_pred cHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCC--CCCCHHHHHHHHHHHHHHHHHHHHHc----CC
Confidence 9999999999767999999999999999998888999999999995 59999999999999999999999987 99
Q ss_pred eeeEEEEEEEeccCC------CCCC--CcccCccccccCCCch---hHHHHHHHHHHHHHHHhhccccccccCCCCCCCc
Q 007824 357 IAHTLTLHASAFKSS------DSDS--RKKFPSKSCPLRYGTA---KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 425 (588)
Q Consensus 357 ~~~tltL~lr~~~~~------~~~~--~~~~~s~s~~L~~~T~---~i~~~A~~Ll~~i~r~~~~~~~y~kaGv~~~~~~ 425 (588)
.|++|+|++++.+.+ .+.. ..+..+++.+|+.+|+ +|++.|.+||++++ ..+.+
T Consensus 420 ~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~d~~~I~~~A~~Ll~~~~---------------~~~~~ 484 (504)
T 3gqc_A 420 KGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMK---------------LNISD 484 (504)
T ss_dssp EEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHTSC---------------CCGGG
T ss_pred ceeEEEEEEEEecccccccccccccCCCcccceeEeecCCCcCCHHHHHHHHHHHHHHhc---------------CCCCC
Confidence 999999999874321 1101 1134578888988876 67888888887621 12348
Q ss_pred eeEEeeccCCcccCC
Q 007824 426 ITALSVSASKIVPVL 440 (588)
Q Consensus 426 Ir~lgvs~s~L~~~~ 440 (588)
||+|||++++|.+..
T Consensus 485 vRllGV~~s~L~~~~ 499 (504)
T 3gqc_A 485 MRGVGIHVNQLVPTN 499 (504)
T ss_dssp EEEEEEEEEEEEECC
T ss_pred eEEEEEEEcCcccCC
Confidence 999999999998653
No 9
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=1.8e-72 Score=620.52 Aligned_cols=392 Identities=24% Similarity=0.362 Sum_probs=310.3
Q ss_pred CCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCC
Q 007824 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA 88 (588)
Q Consensus 9 ~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~ 88 (588)
+..|+|+||||||||||||++++|+|+++||||+++ ++|+||||+||++||++|||+++|+++||++++++
T Consensus 87 ~~~r~I~hiDmDaFYAsvE~~~~P~Lr~kPvaV~~~-----~vV~t~nYeAR~~GVr~gMp~~~Ak~lCP~Lvvv~---- 157 (517)
T 3pzp_A 87 NLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSM-----SMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVP---- 157 (517)
T ss_dssp CCSCCEEEEEESSHHHHHHHHHCGGGTTSCEEEEET-----TEEEEECHHHHTTTCCTTSCHHHHHHHCTTCEEEC----
T ss_pred CcCcEEEEEecCcHHHHHHHHhCccccCCcEEEecC-----CEEEecCHHHHHcCCCCCCcHHHHHHhCCceEEEC----
Confidence 567999999999999999999999999999999975 58999999999999999999999999999999884
Q ss_pred CCCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCC-------------------chhhhHH
Q 007824 89 RGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPES-------------------LDEVDEE 148 (588)
Q Consensus 89 ~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~-------------------~~~~~~~ 148 (588)
+||+.|+++|.+|++||.+| |.||++||||+|||||++....+.. +.+. ...+.+.
T Consensus 158 ---~d~~~Y~~~S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (517)
T 3pzp_A 158 ---PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNW-PEDKRRYFIKMGSSVENDNPGKEVNKLSEH 233 (517)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTSC-CSTTTEEECC--------------------
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCCcEEEECCceEEEEccccccccccc-cccccccccccccccccccccccccccccc
Confidence 79999999999999999999 7899999999999999986433210 0000 0000000
Q ss_pred --hhhhhcccCccCC--CCCchhhhh-hhhhccCccchhhhhhh-HHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHh
Q 007824 149 --ALKSHILGLESKD--GNDSKATVK-EWLCRCDADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222 (588)
Q Consensus 149 --~~~~~l~g~~~~~--~~~~~~~~~-~~~~~~~~~~~~~ll~~-g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs 222 (588)
...+.+|...... +........ ...++.+..+...++.. +..+|++||++|+++||||||||||+||+|||||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~ia~~IR~~I~~~tGlt~S~GIA~Nk~LAKlAs 313 (517)
T 3pzp_A 234 ERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCS 313 (517)
T ss_dssp ------------------------------------CCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhcCChHHHHHHHHHHHHHHHhCCeEEEEEcCCHHHHHHHh
Confidence 0000011000000 000000000 00000011111233432 56899999999999999999999999999999999
Q ss_pred cCCCCCCccccCcc--CHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcC
Q 007824 223 GMNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300 (588)
Q Consensus 223 ~~~KP~g~~vv~~~--~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~ 300 (588)
+++||+|++++.++ ++.+||+++||++|||||+++.++|. .+||+|++||++++ ..|.++||+..+.++++.|+|+
T Consensus 314 ~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~L~-~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gi 391 (517)
T 3pzp_A 314 DKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGL 391 (517)
T ss_dssp HTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHHHH-HTTCCBHHHHHHHH-HHHHHHSCHHHHHHHHHHHTTC
T ss_pred CcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHHHH-HhCCCcHHHHHhhH-HHHHHHhChHHHHHHHHHHcCC
Confidence 99999999999875 68999999999999999999999998 89999999999984 7899999986678889999999
Q ss_pred CCcccccccCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccC
Q 007824 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 380 (588)
Q Consensus 301 d~~~v~~~~~pKsi~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~ 380 (588)
++.+|.+..++|||+.++||+. +.+.+++..+|..|+++|+.||+++ ++.|++|+|++++.+|.. .
T Consensus 392 d~~~v~~~~~~KSi~~e~tf~~---~~~~e~l~~~l~~La~~l~~rLr~~----~~~~~~vtlklk~~~f~~-------~ 457 (517)
T 3pzp_A 392 GSTHLTRDGERKSMSVERTFSE---INKAEEQYSLCQELCSELAQDLQKE----RLKGRTVTIKLKNVNFEV-------K 457 (517)
T ss_dssp CCCSCCCCCCCCCEEEEEEEEE---ECCHHHHHHHHHHHHHHHHHHHHTT----TCCBSCEEEEEEETTSCE-------E
T ss_pred CcccccCCCCCccceeEEEccc---ccCHHHHHHHHHHHHHHHHHHHHHc----CCceeEEEEEEEecCCce-------e
Confidence 9999998888999999999973 7889999999999999999999987 999999999999987742 4
Q ss_pred ccccccCCCch---hHHHHHHHHHHHHHHHhhccccccccCCCCCCCceeEEeeccCCcccCC
Q 007824 381 SKSCPLRYGTA---KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 440 (588)
Q Consensus 381 s~s~~L~~~T~---~i~~~A~~Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~~ 440 (588)
+++.+++.+|+ +|++.|.+||++.|....+ .+..||++||++++|.+..
T Consensus 458 tr~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~~-----------~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 458 TRASTVSSVVSTAEEIFAIAKELLKTEIDADFP-----------HPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp EECCCCSSCBCSHHHHHHHHHHHHHHHHHHHTT-----------SCCCEEEEEEEECCCCCCC
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhhhccC-----------CCCcEEEEEEEecCCcChh
Confidence 67888887775 6889999999986643111 2347999999999998754
No 10
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=1.5e-72 Score=615.63 Aligned_cols=392 Identities=24% Similarity=0.352 Sum_probs=301.1
Q ss_pred CCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCC
Q 007824 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA 88 (588)
Q Consensus 9 ~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~ 88 (588)
+..|+|+||||||||||||++++|+|+++||||+++ |+|+||||+||++||++||++.+|+++||+|++++
T Consensus 31 ~~~r~i~hiD~D~FyAsvE~~~~P~L~~kPvaV~~~-----~~V~a~syeAR~~GV~~gm~~~~A~~lCP~lv~v~---- 101 (459)
T 1t94_A 31 NLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSM-----SMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVP---- 101 (459)
T ss_dssp CCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEECS-----SCEEEECHHHHHTTCCTTCCHHHHHHHCTTCEEEC----
T ss_pred CCCceEEEEecccHHHHHHHhhCccccCCcEEEccC-----CeEEecCHHHHHcCCCCCCcHHHHHHHCCCeEEEC----
Confidence 567999999999999999999999999999999864 68999999999999999999999999999999884
Q ss_pred CCCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcC----------C----C-CCc---hhhhHH-
Q 007824 89 RGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAET----------P----P-ESL---DEVDEE- 148 (588)
Q Consensus 89 ~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~----------~----~-~~~---~~~~~~- 148 (588)
+|++.|+++|++|++||.+| |.||++||||+|||||++....+... . . ..+ ..+.+.
T Consensus 102 ---~d~~~Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (459)
T 1t94_A 102 ---PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHE 178 (459)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTTCCGGGSEEECCC---CCCCCCCGGGGGGSTTT
T ss_pred ---CCHHHHHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHhhcccccccccccccccccccccccCccccccccc
Confidence 79999999999999999998 78999999999999999875432000 0 0 000 000000
Q ss_pred -hhhhhcccCccC----CCCCchhhhhhhhhccCccchhhhhh-hHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHh
Q 007824 149 -ALKSHILGLESK----DGNDSKATVKEWLCRCDADHRDKLLA-CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222 (588)
Q Consensus 149 -~~~~~l~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~ll~-~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs 222 (588)
...+.+++.... .+....+...+|. +....+.+.+|. .+..+|++||++|++++|||||||||+||+|||||+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fg~~~~~la~~IR~~I~~~~Glt~S~GIa~nk~LAKlAs 257 (459)
T 1t94_A 179 RSISPLLFEESPSDVQPPGDPFQVNFEEQN-NPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCS 257 (459)
T ss_dssp TTTGGGCC-----------------------CCCCCCCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccchhhccCCHHHHHHHHHHHHHHHhCCeEEEeecccHHHHHHHh
Confidence 000111110000 0000000000111 111122333442 478899999999999999999999999999999999
Q ss_pred cCCCCCCccccCc--cCHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcC
Q 007824 223 GMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300 (588)
Q Consensus 223 ~~~KP~g~~vv~~--~~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~ 300 (588)
+++||||++++.+ +.+.+||+++||++|||||++++++|. .+||+|++||++++ ..|.++||+..|.++|+.++|+
T Consensus 258 ~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L~-~lGI~T~gdL~~~~-~~L~~~fG~~~~~~l~~~a~G~ 335 (459)
T 1t94_A 258 DKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGL 335 (459)
T ss_dssp HHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHH-HTTCCBHHHHHHTH-HHHHHHSCHHHHHHHHHHHTTC
T ss_pred hccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHHH-HcCCCcHHHHHhhH-HHHHHHhChHhHHHHHHHHcCC
Confidence 9999999999998 479999999999999999999999997 89999999999986 7899999976799999999999
Q ss_pred CCcccccccCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccC
Q 007824 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 380 (588)
Q Consensus 301 d~~~v~~~~~pKsi~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~ 380 (588)
|+++|.+..++|||+++++|+ . +.+.+++..+|..|+++|+.||+++ ++.+++|+|++++.++.. .
T Consensus 336 d~~~v~~~~~~kSi~~~~tf~--~-~~~~~~l~~~l~~L~~~l~~rL~~~----~~~~~~vtl~l~~~~~~~-------~ 401 (459)
T 1t94_A 336 GSTHLTRDGERKSMSVERTFS--E-INKAEEQYSLCQELCSELAQDLQKE----RLKGRTVTIKLKNVNFEV-------K 401 (459)
T ss_dssp CCSCC---C--CCEEEEEEEE--E-ECCHHHHHHHHHHHHSSTTCCCC-------CCCSCEEEEEEETTCCE-------E
T ss_pred CCcccCCCCCCcceeeeeecC--C-CCCHHHHHHHHHHHHHHHHHHHHHh----CCCcceEEEEEEECCCce-------e
Confidence 999999888899999999997 3 7899999999999999999999886 999999999999887642 3
Q ss_pred ccccccCCCch---hHHHHHHHHHHHHHHHhhccccccccCCCCCCCceeEEeeccCCcccCC
Q 007824 381 SKSCPLRYGTA---KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 440 (588)
Q Consensus 381 s~s~~L~~~T~---~i~~~A~~Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~~ 440 (588)
+++++++.+|+ .|.+.|..||+..+.... ..++.||++||++++|.+..
T Consensus 402 srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~~-----------~~~~~ir~lGv~~~~l~~~~ 453 (459)
T 1t94_A 402 TRASTVSSVVSTAEEIFAIAKELLKTEIDADF-----------PHPLRLRLMGVRISSFPNEE 453 (459)
T ss_dssp EECC-CCCCCCC--CHHHHHHHHHHHHHSSST-----------TSCCCEEEEEEEECC-----
T ss_pred eEEEECCCccCCHHHHHHHHHHHHHHHHhhcc-----------CCCCcEEEEEEEEccCcCcc
Confidence 67788877664 688899999988542100 02457999999999998743
No 11
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=1.1e-69 Score=588.95 Aligned_cols=348 Identities=22% Similarity=0.278 Sum_probs=299.8
Q ss_pred CCCCEEEEEeCChhHHHHhhhhCC------CCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCC---
Q 007824 9 SGARIIAHVDLDCFYVQVEQRKQP------KLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQ--- 79 (588)
Q Consensus 9 ~~~r~I~hiD~D~FyasvE~~~~P------~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~--- 79 (588)
...|+|+||||||||||||++++| +|+++||||++.. .+|+|+||||+||++||++||++.+|+++||+
T Consensus 49 ~~~r~i~hiD~d~FyaSvE~~~~p~~l~~~~l~~~Pv~V~~~~--~~~~V~a~syeAR~~GV~~gm~~~~A~~lcP~~~~ 126 (434)
T 2aq4_A 49 KDTYIIFHIDFDCFFATVAYLCRSSSFSACDFKRDPIVVCHGT--KNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIK 126 (434)
T ss_dssp SCEEEEEEEEETTTTHHHHHHTCCGGGTTCCTTTSCEEECSCS--SSCBCSEECHHHHHTTCCTTCBHHHHHTTCCTTCC
T ss_pred CCceEEEEEecCcHHHHHHHHHcCcccccccccCCcEEEEecC--CCCeEEEcCHHHHHcCCCCCCcHHHHHHhCCCCCC
Confidence 356899999999999999999999 9999999998542 24679999999999999999999999999999
Q ss_pred cEEEEccCCCCCCChHHHHHHHHHHHHHHhhc---CCeEEeccceEEEe--ccchhHHhhhcCCCCCchhhhHHhhhhhc
Q 007824 80 IELVQVPVARGKADLSSYRNAGSEVVSILARK---GRCERASIDEVYLD--LTDAAEAMLAETPPESLDEVDEEALKSHI 154 (588)
Q Consensus 80 L~~v~v~~~~~~~d~~~Y~~~S~~v~~iL~~~---~~vE~~SiDEafLD--lt~~~~~~l~~~~~~~~~~~~~~~~~~~l 154 (588)
+++++ +|++.|+++|++|++||.+| +.||++||||+||| +|++... .
T Consensus 127 lvv~~-------~~~~~Y~~~S~~i~~il~~~~~t~~ve~~SiDEaflD~~vt~~~~~---------------------~ 178 (434)
T 2aq4_A 127 LISLP-------YTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIHN---------------------T 178 (434)
T ss_dssp CEEEC-------CCHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC--------------------------
T ss_pred EEEEC-------CChHHHHHHHHHHHHHHHhcCCCCCEEEEcCceeEEcCcCccchhh---------------------c
Confidence 98883 89999999999999999995 58999999999999 9986521 0
Q ss_pred ccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHh-CCceeEEecCcHHHHHHHhcCCCCCCcccc
Q 007824 155 LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKET-EFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233 (588)
Q Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~-Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv 233 (588)
++ .+..+|++||++|++++ |+|||||||+||+|||||++++||+|++++
T Consensus 179 ~~------------------------------~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l 228 (434)
T 2aq4_A 179 NT------------------------------LNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNIT 228 (434)
T ss_dssp -C------------------------------HHHHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECC
T ss_pred CC------------------------------CHHHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEE
Confidence 11 13568999999999999 899999999999999999999999999999
Q ss_pred CccCH-HHhcccCCCCCCCCCcHHHHHHHHHh--hCCcchhhhccC-CHHHHHHHhCcchHHHHHHHHhcCCCcccc---
Q 007824 234 PFSSV-KGLLDSLPIKKMKQLGGKLGTSLQNE--LGVTTVGDLLKF-SEDKLQESYGFNTGTWLWNIARGISGEEVQ--- 306 (588)
Q Consensus 234 ~~~~~-~~~L~~lPI~~l~GiG~k~~~~L~~~--lGI~TigDLa~l-~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~--- 306 (588)
.++++ ..||+++||++|||||++++++|. . +||+|++||+++ |+..|+++||.+.|.++|+.++|+|+++|.
T Consensus 229 ~~~~~~~~~l~~lpv~~l~GiG~~~~~~L~-~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~ 307 (434)
T 2aq4_A 229 FKSNLSEEFWSSFKLDDLPGVGHSTLSRLE-STFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKIL 307 (434)
T ss_dssp CGGGCCHHHHTTCCGGGSTTCCHHHHHHHH-HHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHH
T ss_pred CChhhHHHHhhcCCcccccCcCHHHHHHHH-HhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccc
Confidence 99886 799999999999999999999998 7 899999999999 999999999965799999999999999985
Q ss_pred --cc--cCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccC-CCCCCCcc---
Q 007824 307 --AR--LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS-SDSDSRKK--- 378 (588)
Q Consensus 307 --~~--~~pKsi~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~-~~~~~~~~--- 378 (588)
+. .++|||+.+++|+. ++++.+++..+|..|+++|+.||+++ ++.|++|+|++++... .....++|
T Consensus 308 ~~~~~~~~~ksi~~~~tf~~--~~~~~~~l~~~l~~l~~~l~~rLr~~----~~~~~~v~l~l~~r~~~~~~~~~ky~g~ 381 (434)
T 2aq4_A 308 YDPKEVLQRKSLSIDINWGI--RFKNITQVDLFIERGCQYLLEKLNEI----NKTTSQITLKLMRRCKDAPIEPPKYMGM 381 (434)
T ss_dssp HCHHHHHSCCCEEEEECSSC--CCSSHHHHHHHHHHHHHHHHHHHHHT----TEEEEEEEEEEEEECTTSCSSCSSTTCC
T ss_pred cCcccCCCCceeEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHc----CCcceEEEEEEEEecCCCCcccccccCC
Confidence 22 47899999999985 49999999999999999999999987 9999999999985331 11111222
Q ss_pred ----cCccccccCCCch---hHHHHHHHHHHHHHHHhhccccccccCCCCCCCceeEEeeccCCccc
Q 007824 379 ----FPSKSCPLRYGTA---KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 438 (588)
Q Consensus 379 ----~~s~s~~L~~~T~---~i~~~A~~Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~ 438 (588)
..+++.+++.||+ .|.+.|..+|+.++. .+.+||.|||++++|.+
T Consensus 382 gd~~~~s~s~~l~~pt~~~~~i~~~a~~ll~~~~~---------------~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 382 GRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGC---------------PPMELRGLALQFNKLVD 433 (434)
T ss_dssp CSEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHTC---------------CGGGEEEEEEEEEEEEE
T ss_pred CCcccceEEeecCCCcCCHHHHHHHHHHHHHHhcC---------------CCCCEEEEEEEEeCccc
Confidence 3467888887775 678888888887421 13489999999999864
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=3.2e-59 Score=462.53 Aligned_cols=215 Identities=29% Similarity=0.512 Sum_probs=187.3
Q ss_pred CCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccC
Q 007824 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNE--WKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPV 87 (588)
Q Consensus 10 ~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~--~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~ 87 (588)
...+|+||||||||||||++++|+|+++||||++... .++|+|+||||+||++||++||++.+|+++||++++++
T Consensus 4 ~~~~~~hiD~d~FyasvE~~~~p~L~~~Pv~V~~~~~~~~~~g~V~a~s~~Ar~~GV~~gm~~~~A~~lcP~l~v~~--- 80 (221)
T 1im4_A 4 HHHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP--- 80 (221)
T ss_dssp SSCCEEEEEETTHHHHHHHHHSGGGTTSCEEEEEEC----CCEEEEEECHHHHTTTCCTTCBHHHHHHHCTTSEEEE---
T ss_pred cceEEEEEecCcHHHHHHHHHCccccCCcEEEEecCCcCCCCCEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEEC---
Confidence 3568999999999999999999999999999995311 24689999999999999999999999999999999985
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCch
Q 007824 88 ARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK 166 (588)
Q Consensus 88 ~~~~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 166 (588)
+|++.|+++|++|++++.+| |.||++||||+|||+|++.+. +||
T Consensus 81 ----~~~~~Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~---------------------l~~---------- 125 (221)
T 1im4_A 81 ----MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG---------------------NFE---------- 125 (221)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT---------------------CHH----------
T ss_pred ----CCHHHHHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhh---------------------ccC----------
Confidence 79999999999999999999 789999999999999997520 233
Q ss_pred hhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCC
Q 007824 167 ATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246 (588)
Q Consensus 167 ~~~~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lP 246 (588)
.+..++++||++|++++|+|||+|||+||++||||++++||+|++++.++++.+||+++|
T Consensus 126 --------------------~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~~~~~~L~~lp 185 (221)
T 1im4_A 126 --------------------NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELD 185 (221)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGGGHHHHHHTCB
T ss_pred --------------------CHHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHHHHHHHHHhCC
Confidence 135689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHH
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~ 283 (588)
|++|||||+++.++|+ ++||+|++||+++|+..|++
T Consensus 186 v~~l~giG~~~~~~L~-~~Gi~TigdL~~~~~~~L~~ 221 (221)
T 1im4_A 186 IDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEK 221 (221)
T ss_dssp GGGSTTCCHHHHHHHH-HTTCCBTTC-----------
T ss_pred cccccCCCHHHHHHHH-HcCCCcHHHHHCCCHHHhhC
Confidence 9999999999999998 89999999999999988764
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=98.87 E-value=1.5e-09 Score=95.61 Aligned_cols=98 Identities=10% Similarity=0.157 Sum_probs=77.5
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEE---EEEEeccCCCCCCCcccCccccccC-C
Q 007824 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT---LHASAFKSSDSDSRKKFPSKSCPLR-Y 388 (588)
Q Consensus 313 si~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tlt---L~lr~~~~~~~~~~~~~~s~s~~L~-~ 388 (588)
.+|.+.||+ .++.+.+++..+|..|+++++.||+++ + .|++|+ |++++.+|.. .+++.+.| .
T Consensus 6 ~~g~e~Tf~--~d~~~~~~l~~~l~~l~~~v~~rLr~~----~-~~~tV~k~~vkir~~dF~~-------~trs~t~pt~ 71 (115)
T 1unn_C 6 HVGVERTMA--EDIHHWSECEAIIERLYPELERRLAKV----K-PDLLIARQGVKLKFDDFQQ-------TTQEHVWPRL 71 (115)
T ss_dssp EEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHHHH----C-TTCBCSEEEEEEEETTSCE-------EEEEEECSBC
T ss_pred CCccceECC--CCCCCHHHHHHHHHHHHHHHHHHHHhh----C-CCCeEEEeEEEEEECCCCe-------EEeccccCcC
Confidence 478999998 469999999999999999999999987 8 999999 9999998752 23344322 1
Q ss_pred CchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCceeEEeeccCCcccCC
Q 007824 389 GTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 440 (588)
Q Consensus 389 ~T~~i~~~A~~Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~~~~ 440 (588)
.+.+|++.|.+||+.+| .+.+||++||++++|.+..
T Consensus 72 ~~~~i~~~a~~Ll~~~~----------------~~~~vRllGV~ls~L~~~~ 107 (115)
T 1unn_C 72 NKADLIATARKTWDERR----------------GGRGVRLVGLHVTLLDPQM 107 (115)
T ss_dssp CHHHHHHHHHHHHHHHC----------------TTCCEEEEEEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHhhh----------------cCCCEEEEEEEEeCCCCCC
Confidence 22378888898888732 1358999999999997653
No 14
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.43 E-value=0.0072 Score=47.98 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCc--chHHHHHHHHh
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIAR 298 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~--~~g~~l~~~a~ 298 (588)
|.+|+|||..+..+|. ..||+|+.||+.++...|....|. ..+..+...+|
T Consensus 9 l~~L~Gi~~~~~~kL~-e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLA-ARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHSSTTCCHHHHHHHH-TTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 5577899999999998 799999999999999999988874 34566766666
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=95.34 E-value=0.024 Score=43.91 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcch-HHHHHHHHhc
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 299 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~-g~~l~~~a~G 299 (588)
+.+|||||++....|.+ -..++.++..++.++|.+..|... +..+|+..+.
T Consensus 6 L~~IpGIG~kr~~~LL~--~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHTSTTCCHHHHHHHHH--HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 45789999999999985 455999999999999999999887 8999988864
No 16
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=93.40 E-value=0.034 Score=46.56 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHH
Q 007824 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 281 (588)
Q Consensus 246 PI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L 281 (588)
.|++||+||+++++.|. +.||+|+.||....+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~-~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHH
Confidence 47899999999999998 899999999998765543
No 17
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=92.84 E-value=0.061 Score=44.98 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=30.2
Q ss_pred CCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHH
Q 007824 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 280 (588)
Q Consensus 246 PI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~ 280 (588)
.|++||+||+++++.|. +.||.|+.||..+.+..
T Consensus 5 ~L~dLPNig~~~e~~L~-~~GI~t~~~Lr~~Ga~~ 38 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKE 38 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHCHHH
T ss_pred HHhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHH
Confidence 47899999999999998 89999999999887654
No 18
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.55 E-value=0.091 Score=43.08 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcch-HHHHHHHHh
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIAR 298 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~-g~~l~~~a~ 298 (588)
+.+|||||++....|.+ -+.++.+|..++.+.|.+..|... +..+|+.++
T Consensus 20 L~~IpGIG~kr~~~LL~--~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp HHTCSSCCHHHHHHHHH--HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 45789999999999984 677999999999999999999887 899998886
No 19
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=91.91 E-value=0.15 Score=40.70 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=43.1
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHHh
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 298 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a~ 298 (588)
..||.++ ++..+...-|. +.||+|++||...+...|.+. ||.+....+...+.
T Consensus 8 ~~~Ie~L-~LS~Ra~NcLk-ragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~ 62 (73)
T 1z3e_B 8 EMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 62 (73)
T ss_dssp TCBGGGS-CCBHHHHHHHH-HTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4889888 89999999997 899999999999999998765 78765555554443
No 20
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=91.62 E-value=0.097 Score=45.48 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=45.2
Q ss_pred cCCCCCCC--CCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCc--chHHHHHHHHhc
Q 007824 244 SLPIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARG 299 (588)
Q Consensus 244 ~lPI~~l~--GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~--~~g~~l~~~a~G 299 (588)
++||.+|. |||+.+.++|. ..|++|+.+|+..++..|.+.=|. ..+..+...++-
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~-eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLE-EAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHH-TTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHHHH-HcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 35788887 99999999998 799999999999999999877654 346667776663
No 21
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.34 E-value=0.41 Score=39.44 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=40.1
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHHh
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 298 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a~ 298 (588)
+..++|||++++.+|.+.+| ++.+|...+.+.|.+. +|...+..++....
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 45789999999999987676 7889999999999887 67666666766554
No 22
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=89.04 E-value=0.16 Score=42.79 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=24.1
Q ss_pred cEEEEcCHHHHhcCCCCCCcHHHHHhh
Q 007824 50 GGLIAVGYEARNYGVKRSMRGDEAKEV 76 (588)
Q Consensus 50 g~Via~SyeAR~~GVk~gM~~~~A~~l 76 (588)
+-|.++|.+|+++||+.||++.+|+.+
T Consensus 74 a~i~~vt~~A~elGI~~GM~g~eAL~k 100 (102)
T 1qw2_A 74 AKVVEASQEAQKVGINPGDVLRNVIDK 100 (102)
T ss_dssp SBCSEECHHHHHTTCCTTCBHHHHGGG
T ss_pred ChHHHHHHHHHHhCCCCCCCHHHHHHh
Confidence 347899999999999999999999864
No 23
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=88.59 E-value=0.3 Score=39.46 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=42.0
Q ss_pred cccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHH
Q 007824 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 296 (588)
Q Consensus 242 L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~ 296 (588)
+-..||.++ ++..+...-|. +.||+|++||...+...|.+. ||.+....+...
T Consensus 13 ~l~~~Ie~L-~LS~Ra~NcLk-~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~ 67 (79)
T 3gfk_B 13 VLEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAK 67 (79)
T ss_dssp GGGCBGGGS-CCBHHHHHHHH-HTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHH
T ss_pred HhcCcHHHh-CCCHHHHHHHH-HhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHH
Confidence 447889999 89999999997 899999999999999988654 676544444443
No 24
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=88.07 E-value=0.24 Score=39.64 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=37.7
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHH
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWN 295 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~ 295 (588)
..+..++|||++++++|.+.+| ++.+|...+.+.|.+. +|...+..+..
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Confidence 4467899999999999987766 6888999999999877 55554454443
No 25
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=88.02 E-value=0.4 Score=39.38 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=42.8
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHHh
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 298 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a~ 298 (588)
..||.++ ++..+...-|. +.||+|++||...+...|.+. ||.+....+...+.
T Consensus 11 ~~~I~~L-~LSvRa~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 65 (86)
T 3k4g_A 11 LRPVDDL-ELTVRSANCLX-AEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLA 65 (86)
T ss_dssp GSBGGGG-CCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHH
Confidence 5688888 79999999997 899999999999999888644 78765555555544
No 26
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=87.17 E-value=0.48 Score=38.80 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=39.6
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHHh
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 298 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a~ 298 (588)
+..++|||++++.+|.+.+| ++.++...+.+.|.+. +|...+..++....
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 45789999999999987665 7899999999999887 66655666666554
No 27
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=84.27 E-value=2.5 Score=34.37 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=39.1
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcc
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 288 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~ 288 (588)
.+.++..||+-.-+.+.|+ +-||+|+.|+...++.+|.+..|..
T Consensus 3 ~l~~~~~p~Lse~~~~~L~-~~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 3 VLRVGLCPGLTEEMIQLLR-SHRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp CCCTTSSTTCCHHHHHHHH-HTTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHhCCC
Confidence 4556666999999999998 8999999999999999999999974
No 28
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=84.16 E-value=0.2 Score=49.26 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHH
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWN 295 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~ 295 (588)
..+.+|+|||++++..|.+ .|+.++.+|...+...|.+. +|...+..++.
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~-~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~ 66 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLRE-AGFESVEDVRGADQSALADVSGIGNALAARIKA 66 (241)
T ss_dssp -----------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHH
Confidence 4677899999999999984 59999999999999999887 66655555543
No 29
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=83.91 E-value=0.54 Score=38.58 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=26.8
Q ss_pred cccCCCCCCCCCcHHHHHHHHHhhCCcchhhhc
Q 007824 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 274 (588)
Q Consensus 242 L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa 274 (588)
|..-+|.+|+|||+.++++|. .-|+.+..+|.
T Consensus 15 mgeK~V~evpGIG~~~~~~L~-~~Gf~kAy~lL 46 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLE-ERGFDKAYVVL 46 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHH-HTTCCSHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHH-HcCccHHHHHH
Confidence 334578999999999999998 79999877664
No 30
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=83.11 E-value=0.97 Score=43.66 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCc-chHHHHHHH
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNI 296 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~-~~g~~l~~~ 296 (588)
-++..|+|||+++++.|.+.+| ++..|.+++.+.|.+.+|. ..+..+++.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 3457899999999999998777 8889999999999998998 767766653
No 31
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=82.22 E-value=0.51 Score=39.67 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=43.2
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHHh
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 298 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a~ 298 (588)
..||.++ ++..+...-|. +.||+|++||...+...|.+. ||.+....+...+.
T Consensus 23 ~~~Ie~L-~LSvRs~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 77 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 77 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHH-TTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3889888 78888999997 899999999999999998654 88876555655554
No 32
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.73 E-value=1.2 Score=45.92 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=44.1
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcc--hHHHHHHHHh
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 298 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~--~g~~l~~~a~ 298 (588)
..+|.+|+||+..+.++|. ..|++|+.+++..++..|.+.-|.. ....+.+.+.
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~-~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLR-EAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccHHHcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3589999999999999998 7999999999999999999988853 2344554444
No 33
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.66 E-value=1.2 Score=44.94 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=42.5
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcc--hHHHHHHHHh
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 298 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~--~g~~l~~~a~ 298 (588)
.+|.+|+||++.+.++|. ..||+|+.||+..++..|.+.-|.. .+..+...++
T Consensus 3 ~~~~~l~gi~~~~~~kL~-~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~ 57 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLV-EAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGAR 57 (322)
T ss_dssp --CTTSTTCCHHHHHHHH-HHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHH
Confidence 367889999999999998 7999999999999999998887753 2345555555
No 34
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=78.08 E-value=2.4 Score=43.32 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=50.0
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcc--hHHHHHHHHhcCCCccc
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGISGEEV 305 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~--~g~~l~~~a~G~d~~~v 305 (588)
..|+..|||||+...++|. ..||.|+.||..+++..+...+|.. .+..+++.++....-.|
T Consensus 156 ~~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v 218 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCK-EINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVEL 218 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE
T ss_pred CCceeCCCCCCHHHHHHHH-hCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEE
Confidence 3578899999999999997 7999999999999999999987743 46677777777665544
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=77.50 E-value=0.95 Score=51.15 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=45.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHh
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~ 298 (588)
+|+..|+|||+..+.+|. ..|++|+.||+ +++..|.+.+|...|..+++.+.
T Consensus 657 ~~L~qlp~i~~~rar~L~-~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY-NNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAA 708 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH-HTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH-HcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHH
Confidence 577799999999999998 79999999999 99999999998666777776443
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=73.48 E-value=1.7 Score=49.84 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=28.4
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
.||+.+.|||++.++.|. ++||.|++||...
T Consensus 115 ~~~~~l~gvg~~~~~~l~-~lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLK-KLGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHH-TTTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHH-HCCCCcHHHHHhh
Confidence 489999999999999998 7999999999863
No 37
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=72.88 E-value=3.5 Score=42.25 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcc--hHHHHHHHHhcCCC
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGISG 302 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~--~g~~l~~~a~G~d~ 302 (588)
.|+..|||||+...++|. ..||.|+.||..+++..+...+|.. .+..+.+.++-...
T Consensus 161 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~ 219 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPN 219 (339)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCC
T ss_pred CceecCCCCCHHHHHHHH-hcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 578899999999999997 7999999999999999998888732 24556666655443
No 38
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=72.13 E-value=1.6 Score=44.92 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 248 ~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
.+|||||++++++|.+ .||+|+.||...
T Consensus 101 ~~V~GiGpk~a~~l~~-~Gi~tledL~~a 128 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVD-EGIKTLEDLRKN 128 (335)
T ss_dssp TTSTTCCHHHHHHHHH-TTCCSHHHHHTC
T ss_pred hCCCCCCHHHHHHHHH-cCCCCHHHHHHh
Confidence 3899999999999985 599999999974
No 39
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=71.49 E-value=3.5 Score=31.97 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=36.4
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHH
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 297 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a 297 (588)
+..++|||.+++.+|.+.+ .++.+|...+...|.+. +|...+..++...
T Consensus 16 L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 4678999999999998655 45888888898888776 5554455555444
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=71.09 E-value=1.5 Score=49.49 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=46.5
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHh
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~ 298 (588)
+|+..|||||+..+++|. ..|++|+.||++++ ..|.+.+|...|..+.+.+.
T Consensus 632 ~~L~qlp~v~~~~ar~l~-~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLY-NAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHH-TTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHH-HcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC
Confidence 567789999999999998 79999999999999 99999988777888888777
No 41
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.38 E-value=1 Score=45.75 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCc
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~ 287 (588)
.||.+|+||++.+.++|. ..|++|+.+++..++..|.+..|.
T Consensus 12 ~~~~~l~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~g~ 53 (324)
T 2z43_A 12 KTINDLPGISQTVINKLI-EAGYSSLETLAVASPQDLSVAAGI 53 (324)
T ss_dssp -------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHhhCC
Confidence 488999999999999998 799999999999999988887774
No 42
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=67.51 E-value=2.3 Score=43.73 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 248 ~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
.+|||||+|++++|.+ .||+|+.||...
T Consensus 99 ~~v~GiG~k~a~~l~~-~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQ-QGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHH-cCCCCHHHHHHH
Confidence 4899999999999985 599999999763
No 43
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=66.38 E-value=3.3 Score=46.70 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=36.8
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 284 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r 284 (588)
.+|+..|||||+..+++|. ..|++|+.||+++++..+.+.
T Consensus 645 ~~~L~qlp~v~~~rar~L~-~~G~~s~~dl~~~~~~~l~~~ 684 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALY-NSGFRSIEDISQARPEELLKI 684 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHTS
T ss_pred chhhhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHHh
Confidence 3688899999999999998 799999999999999999876
No 44
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=66.13 E-value=4 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
+..++|||+++++++.+..+..++.||.++
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v 58 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKV 58 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGS
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhC
Confidence 346799999999999876678888888764
No 45
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=65.35 E-value=2.9 Score=43.45 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.2
Q ss_pred CCCCCCcHHHHHHHHHhhCCcchhhhcc
Q 007824 248 KKMKQLGGKLGTSLQNELGVTTVGDLLK 275 (588)
Q Consensus 248 ~~l~GiG~k~~~~L~~~lGI~TigDLa~ 275 (588)
.+|||||+|++++|.+ .||+|+.||..
T Consensus 105 ~~I~GvG~kta~~l~~-~Gi~tledL~~ 131 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQ-EGLRTLDELRE 131 (360)
T ss_dssp HTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred hCCCCCCHHHHHHHHH-cCCCCHHHHHh
Confidence 3899999999999985 59999999984
No 46
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=64.66 E-value=15 Score=33.05 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=54.6
Q ss_pred HHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHH
Q 007824 201 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 280 (588)
Q Consensus 201 ~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~ 280 (588)
.++|++- .++-|.+-+-...+.+++......|..+.++|..+ |++ +....+. ..|+.++..|..++.+.
T Consensus 48 ~~lGIt~---~gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~i------gL~-qY~~~F~-~~g~d~~~~l~~lt~~d 116 (149)
T 3sei_A 48 TAIGVTK---PGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMI------GLA-QYYKVLV-DNGYENIDFITDITWED 116 (149)
T ss_dssp HHTTCCS---HHHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHHT------TCG-GGHHHHH-HTTCCSHHHHTTCCHHH
T ss_pred HHcCCCC---HHHHHHHHHHHHHHHhccccCCCCcccHHHHHHHc------Cch-hhHHHHH-HCCCchHHHHhhCCHHH
Confidence 5666653 24555555555566666655445577899999877 555 5667787 68999999999999999
Q ss_pred HHHHhCcc
Q 007824 281 LQESYGFN 288 (588)
Q Consensus 281 L~~rfG~~ 288 (588)
| ..+|+.
T Consensus 117 L-~~lGI~ 123 (149)
T 3sei_A 117 L-QEIGIT 123 (149)
T ss_dssp H-HHHTCC
T ss_pred H-HHCCCC
Confidence 9 568875
No 47
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=63.40 E-value=3.3 Score=43.37 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCCCcHHHHHHHHHhhCCcchhhhcc
Q 007824 249 KMKQLGGKLGTSLQNELGVTTVGDLLK 275 (588)
Q Consensus 249 ~l~GiG~k~~~~L~~~lGI~TigDLa~ 275 (588)
+|||||+|++++|-+ .||+|+.||.+
T Consensus 125 ~I~GvGpk~a~~ly~-~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFR-MGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHH-cCCCcHHHHHh
Confidence 899999999999985 59999999984
No 48
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=62.69 E-value=3 Score=39.30 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=42.6
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhh-hccCCHHHHHHH--hCcchHHHHHHHHhcC
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGD-LLKFSEDKLQES--YGFNTGTWLWNIARGI 300 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigD-La~l~~~~L~~r--fG~~~g~~l~~~a~G~ 300 (588)
+..++|||+|++..|.+.+|-.++-+ +...+...|.+. .|.+.+++++..+++.
T Consensus 74 L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 74 LLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 44699999999999997788766653 777888999888 5666778888777754
No 49
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.63 E-value=6.1 Score=41.54 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=44.9
Q ss_pred hcccCCCCCCCC--CcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcch--HHHHHHHHh
Q 007824 241 LLDSLPIKKMKQ--LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT--GTWLWNIAR 298 (588)
Q Consensus 241 ~L~~lPI~~l~G--iG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~--g~~l~~~a~ 298 (588)
.-...||.+|.+ |++++.++|. ..|++|+.+|+..++..|.+..|... ...+...++
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~-~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLR-ESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccCccCHHHHHhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334578989986 8899999998 79999999999999999999988642 334444444
No 50
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=59.94 E-value=6.7 Score=43.98 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=40.3
Q ss_pred CCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHH--HhCcchHHHHHHH
Q 007824 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE--SYGFNTGTWLWNI 296 (588)
Q Consensus 246 PI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~--rfG~~~g~~l~~~ 296 (588)
..-+|.|+|+++.++|-+..+|+++.||..+....|.. .||.+.+..|++.
T Consensus 442 ~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 442 KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQ 494 (667)
T ss_dssp TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHH
T ss_pred cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHH
Confidence 33478999999999998777899999999998777765 4787666666543
No 51
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=59.86 E-value=7.7 Score=43.53 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=40.6
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHH--HhCcchHHHHHH
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE--SYGFNTGTWLWN 295 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~--rfG~~~g~~l~~ 295 (588)
-..-+|.|+|+++.++|.+..+|+++.||..+....|.. .||.+.+..|++
T Consensus 446 r~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~ 498 (671)
T 2owo_A 446 RRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVN 498 (671)
T ss_dssp TTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHH
Confidence 344588999999999999666789999999998887776 477765665654
No 52
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=55.88 E-value=8.7 Score=36.57 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH--hCcchHHHHHHHHh
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 298 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r--fG~~~g~~l~~~a~ 298 (588)
+..++|||++++..|.+.+| ++.+|...+.+.|... +|...+..++....
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence 45799999999999987655 5888999999999887 56655666665543
No 53
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=55.79 E-value=4.3 Score=38.65 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchh-hhccCCHHHHHHH--hCcchHHHHHHHHhcC
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 300 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~Tig-DLa~l~~~~L~~r--fG~~~g~~l~~~a~G~ 300 (588)
+..++|||+|++..|.+.+|..++- .+...+...|.+. .|.+.+++++..+++.
T Consensus 75 L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp HHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 3458999999999998778876654 4778899999888 5666678887777643
No 54
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=48.28 E-value=14 Score=28.90 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCc--chHHHHHHHH
Q 007824 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIA 297 (588)
Q Consensus 250 l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~--~~g~~l~~~a 297 (588)
..||+...+.+|. .-|++|+.+++..|+..|...=|. .....+...+
T Consensus 11 ~lgI~e~~a~~L~-~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 11 YLDIDEDFATVLV-EEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp HHTCCHHHHHHHH-HTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHH-HcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHH
Confidence 3489999999998 799999999999999999776443 2334444444
No 55
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=47.70 E-value=3.9 Score=39.60 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHH-hCcchHHHHH
Q 007824 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES-YGFNTGTWLW 294 (588)
Q Consensus 244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~r-fG~~~g~~l~ 294 (588)
..++..|+|||++++++|.+.+ .|+..|.+++.+.|.+. +|...+..++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~F--GSl~~i~~As~eeL~~VGIG~~~A~~I~ 221 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYF--GSVKKMKEATVEELQRANIPRAVAEKIY 221 (226)
T ss_dssp ----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHh--CCHHHHHhCCHHHHHHcCCCHHHHHHHH
Confidence 3567889999999999998644 56788888888888888 4443344444
No 56
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=46.47 E-value=15 Score=38.39 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcC
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~ 300 (588)
+..|+|||+.++++|.+.+| |+.-+..++.+.|+. -|+ |..-.+...|.
T Consensus 470 LtAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dGI--GekqarrI~gl 518 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DGL--TDAQIRELKGL 518 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TTC--CHHHHHHHHTC
T ss_pred eeccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-ccc--cHHHHHHHhhH
Confidence 35678999999988887777 566666777777754 664 45555556665
No 57
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=46.47 E-value=19 Score=30.03 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=40.1
Q ss_pred cCHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHh
Q 007824 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298 (588)
Q Consensus 236 ~~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~ 298 (588)
+++..+|. -.|+...+.+ .||+.|-.||..+++++|+..+|. .|.++|..+.
T Consensus 27 ~EV~~WL~------~kgFS~~tv~----~Lg~ltGaqLf~Ltk~eL~~vCg~-EG~RlysqL~ 78 (99)
T 1wwu_A 27 DEVRAWLE------AKAFSPRIVE----NLGILTGPQLFSLNKEELKKVCGE-EGVRVYSQLT 78 (99)
T ss_dssp HHHHHHHH------HHTCCTTHHH----HTTSSCHHHHHTCCHHHHHHHHTT-THHHHHHHHH
T ss_pred HHHHHHHH------HcCCCHHHHH----HHcCCCHHHHHcCCHHHHHHHCcc-hhHHHHHHHH
Confidence 35666663 2366655543 589999999999999999999994 6999998765
No 58
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.96 E-value=17 Score=30.31 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=39.2
Q ss_pred cCHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHh
Q 007824 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298 (588)
Q Consensus 236 ~~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~ 298 (588)
+++..+|. -.|+...+.+ .||+.|-.||..+++++|+..+| + |.++|..+.
T Consensus 37 ~EV~~WL~------~kgFS~~tv~----~Lg~ltGaqLl~Ltk~eL~~vCg-E-G~RlysqL~ 87 (99)
T 2e8m_A 37 EDVKTWLQ------SKGFNPVTVN----SLGVLNGAQLFSLNKDELRTVCP-E-GARVYSQIT 87 (99)
T ss_dssp THHHHHHH------HHTCCHHHHH----HTSSSCHHHHHHCCHHHHHHHCT-T-HHHHHHHHH
T ss_pred HHHHHHHH------HcCCCHHHHH----HHcCCCHHHHHcCCHHHHHHHCC-c-hHHHHHHHH
Confidence 35556652 2366655543 68999999999999999999999 5 999998664
No 59
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=45.17 E-value=4.5 Score=41.40 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCC--CCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCc
Q 007824 246 PIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287 (588)
Q Consensus 246 PI~~l~--GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~ 287 (588)
||.+|+ ||+..+.++|. ..|++|+.|++..++..|.+.-|.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~~i 68 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLK-SVGICTIKGIQMTTRRALCNVKGL 68 (343)
T ss_dssp --------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCC
Confidence 888998 99999999998 799999999999999998877664
No 60
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=43.26 E-value=21 Score=39.39 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCCCCcHHHHHHHHHhhC-CcchhhhccCCHHHHHH--HhCcchHHHHHHHH
Q 007824 249 KMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQE--SYGFNTGTWLWNIA 297 (588)
Q Consensus 249 ~l~GiG~k~~~~L~~~lG-I~TigDLa~l~~~~L~~--rfG~~~g~~l~~~a 297 (588)
+|.|+|.++.++|- ..| |+++.||..+..+.|.. +||.+.+..|++..
T Consensus 450 dI~GlG~~~i~~L~-~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 450 DVDGMGDKIIDQLV-EKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp CCTTCCHHHHHHHH-HTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHH-hcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 67899999999998 678 59999999999999875 58877677776543
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=39.90 E-value=18 Score=45.16 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcc--hHHHHHHHHhcCCC
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGISG 302 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~--~g~~l~~~a~G~d~ 302 (588)
.|+..|||||+..+++|. ..||+|+.||+.+++..+...++.. .+..+.+.++....
T Consensus 1557 ~~L~qip~i~~~~ar~l~-~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~ 1615 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPN 1615 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHH-HHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCC
T ss_pred cCEecCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCc
Confidence 578899999999999998 7999999999999999998887642 34555565554443
No 62
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=38.79 E-value=49 Score=30.28 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHH--------hCCceeEEecC
Q 007824 190 LIVTELRMQVLKE--------TEFTCSAGIAH 213 (588)
Q Consensus 190 ~la~~Ir~~I~~~--------~Glt~SvGIa~ 213 (588)
.++.+|++.|.+. ..+++|+||+.
T Consensus 99 ~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia~ 130 (179)
T 3tvk_A 99 RAGVRICQLVDNHAITHSEGHINITVTAGVSR 130 (179)
T ss_dssp HHHHHHHHHHHHSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCcccCCceEEEEEEEEEEe
Confidence 4577788877542 36899999983
No 63
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=37.20 E-value=23 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.7
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
+..|||||+++++++-+.=++.++.||...
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 447899999999999853357889998864
No 64
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=36.80 E-value=45 Score=25.95 Aligned_cols=49 Identities=29% Similarity=0.387 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHHH
Q 007824 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257 (588)
Q Consensus 192 a~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k~ 257 (588)
.+..|+++.++.+++..+ |-++.+|..||... |.+..+++ .|+|||.+-
T Consensus 11 L~~wR~~~A~~~~vpp~~-I~~d~~L~~iA~~~----------P~t~~eL~------~i~Gvg~~k 59 (77)
T 2rhf_A 11 LRELRRELMKETGYSAFV-VFTNATLEALAARQ----------PRTLAELA------EVPGLGEKR 59 (77)
T ss_dssp HHHHHHHHHHHHCCCHHH-HCCHHHHHHHHHHC----------CCSHHHHT------TSTTTCHHH
T ss_pred HHHHHHHHHHHcCCCcce-eeCHHHHHHHHHhC----------CCCHHHHh------hCCCCCHHH
Confidence 678899999999999886 89999999999874 44555554 688998643
No 65
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=36.78 E-value=13 Score=40.89 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.8
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhcc
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLK 275 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~ 275 (588)
+.+|||||+|++.+|.+ -||.|+.||.+
T Consensus 99 L~~v~GVGpk~A~~i~~-~G~~s~edL~~ 126 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWL-AGIDSLERLRE 126 (578)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HhCCCCcCHHHHHHHHH-cCCCCHHHHHH
Confidence 34899999999999984 59999999986
No 66
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.96 E-value=15 Score=40.42 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=51.4
Q ss_pred EecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHHHHHHHHHhhCCcchhhhcc-CCHHHHHHHhCcc
Q 007824 210 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK-FSEDKLQESYGFN 288 (588)
Q Consensus 210 GIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~-l~~~~L~~rfG~~ 288 (588)
|||+.+-++-+.. ..+.+++++......-.|.++||||.|+++++. +|+....|+.. +|.......
T Consensus 100 GvGpk~A~~~~~~-------lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~--~~l~~~~~~~~r~~~~e~~~~---- 166 (575)
T 3b0x_A 100 GVGPKTARLLYEG-------LGIDSLEKLKAALDRGDLTRLKGFGPKRAERIR--EGLALAQAAGKRRPLGAVLSL---- 166 (575)
T ss_dssp TTCHHHHHHHHHT-------SCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHH--HHHHHHHHHTCCEEHHHHHHH----
T ss_pred CcCHHHHHHHHHh-------cCCCCHHHHHHHHHcCCcccCCCCCccHHHHHH--HHHHHHHHhccceeHHHHHHH----
Confidence 8888665555443 123345555555544457899999999999985 68888888764 566555442
Q ss_pred hHHHHHHHHhcCCC
Q 007824 289 TGTWLWNIARGISG 302 (588)
Q Consensus 289 ~g~~l~~~a~G~d~ 302 (588)
+..+.+.+.+++.
T Consensus 167 -~~~i~~~l~~~~~ 179 (575)
T 3b0x_A 167 -ARSLLEAIRALPG 179 (575)
T ss_dssp -HHHHHHHHHTSTT
T ss_pred -HHHHHHHHHhCCC
Confidence 4456677777653
No 67
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.24 E-value=16 Score=40.23 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.9
Q ss_pred CCCCCCcHHHHHHHHHhhCCcchhhhccC
Q 007824 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKF 276 (588)
Q Consensus 248 ~~l~GiG~k~~~~L~~~lGI~TigDLa~l 276 (588)
..++|||+|++.++.+.+|+.|+.||...
T Consensus 96 ~~v~GvGpk~A~~~~~~lg~~~~~~l~~a 124 (575)
T 3b0x_A 96 MEVPGVGPKTARLLYEGLGIDSLEKLKAA 124 (575)
T ss_dssp HTSTTTCHHHHHHHHHTSCCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 37899999999998756899999999763
No 68
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=33.73 E-value=19 Score=34.29 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHHhhCCcchh-hhccCCHHHHHHHh--CcchHHHHHHHHhcCC
Q 007824 250 MKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQESY--GFNTGTWLWNIARGIS 301 (588)
Q Consensus 250 l~GiG~k~~~~L~~~lGI~Tig-DLa~l~~~~L~~rf--G~~~g~~l~~~a~G~d 301 (588)
++|||+|++..+.+.+|..++. .+..-++..|.+.= |.+.++++...+.+.-
T Consensus 93 v~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 93 VSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp STTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred cCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 8899999999998778888776 36677888888774 4556677777776653
No 69
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=33.20 E-value=29 Score=30.55 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.7
Q ss_pred CCCCCcHHHHHHHHHhh-CCcchhhhccCC
Q 007824 249 KMKQLGGKLGTSLQNEL-GVTTVGDLLKFS 277 (588)
Q Consensus 249 ~l~GiG~k~~~~L~~~l-GI~TigDLa~l~ 277 (588)
++||||++.++++- .. ...++.||.+.+
T Consensus 67 ~LpGiGp~~A~~II-~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 67 QYRGLYPTLAKLIV-KNAPYESVEDVLNIP 95 (134)
T ss_dssp GSTTCTHHHHHHHH-HTCCCSSGGGGGGCT
T ss_pred HCCCCCHHHHHHHH-HcCCCCCHHHHHhCC
Confidence 68999999999998 45 488999999863
No 70
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=31.45 E-value=25 Score=33.42 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.3
Q ss_pred CCCCCCCcHHHHHHHH
Q 007824 247 IKKMKQLGGKLGTSLQ 262 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~ 262 (588)
+++|||||+|++.+|.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 4679999999999996
No 71
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=29.59 E-value=50 Score=28.27 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCCCCCCcHHHHHHHHHhhCCc---chhhhc
Q 007824 247 IKKMKQLGGKLGTSLQNELGVT---TVGDLL 274 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~---TigDLa 274 (588)
++.|.|||+.++..+.+.+||. .++||.
T Consensus 18 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt 48 (114)
T 3r8n_M 18 LTSIYGVGKTRSKAILAAAGIAEDVKISELS 48 (114)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCTTCCSTTCC
T ss_pred HhhhcCcCHHHHHHHHHHcCcCcccCcccCC
Confidence 5789999999999998899996 455554
No 72
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=28.10 E-value=56 Score=29.22 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCc---chhhhcc
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVT---TVGDLLK 275 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~---TigDLa~ 275 (588)
..++.|.|||+.++..+.+.+||. .++||..
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~ 63 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQ 63 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCH
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCH
Confidence 457889999999999998899994 5666653
No 73
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=27.87 E-value=69 Score=25.75 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHH
Q 007824 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 256 (588)
Q Consensus 191 la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k 256 (588)
-.+..|.++.++.+++..+ |-++++|..||... |.+..+++ .|+|||.+
T Consensus 18 ~L~~wR~~~A~~~~vpp~~-If~D~tL~eiA~~~----------P~t~~eL~------~i~Gvg~~ 66 (89)
T 1wud_A 18 KLRKLRKSIADESNVPPYV-VFNDATLIEMAEQM----------PITASEML------SVNGVGMR 66 (89)
T ss_dssp HHHHHHHHHHHHHTSCHHH-HCCHHHHHHHHHHC----------CCSHHHHH------TSTTCCHH
T ss_pred HHHHHHHHHHHHcCCCcce-eeCHHHHHHHHHhC----------CCCHHHHh------hCCCCCHH
Confidence 3678999999999999887 89999999999774 44555555 67899864
No 74
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=25.83 E-value=82 Score=25.01 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHH
Q 007824 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 256 (588)
Q Consensus 192 a~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k 256 (588)
....|+++.++.|++..+ |-++.+|..||... |.+..+++ .|+|||.+
T Consensus 13 L~~wR~~~A~~~~vp~~~-If~d~tL~~iA~~~----------P~t~~eL~------~i~Gvg~~ 60 (85)
T 2kv2_A 13 LTEVCKSLGKVFGVHYFN-IFNTVTLKKLAESL----------SSDPEVLL------QIDGVTED 60 (85)
T ss_dssp HHHHHHHHHHHHTSCHHH-HCCHHHHHHHHHHC----------CSCHHHHH------TSSSCCHH
T ss_pred HHHHHHHHHHHcCCCcce-eECHHHHHHHHHhC----------CCCHHHHh------hCCCCCHH
Confidence 678899999999999887 89999999999874 44555555 78899864
No 75
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=25.42 E-value=1.7e+02 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHH--------HhCCceeEEecC
Q 007824 190 LIVTELRMQVLK--------ETEFTCSAGIAH 213 (588)
Q Consensus 190 ~la~~Ir~~I~~--------~~Glt~SvGIa~ 213 (588)
.++.+|++.+.+ ...+++|+||+.
T Consensus 110 ~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 110 AALQRLLKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp HHHHHHHHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHhCccccCCceeeEEEEEEEEE
Confidence 467888888864 235899999984
No 76
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=25.13 E-value=42 Score=34.18 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCCCCCcHHHHHHHHHhh--C-CcchhhhccCCHHHHHHHh------CcchHHHHHHHHhcCCCc
Q 007824 247 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLKFSEDKLQESY------GFNTGTWLWNIARGISGE 303 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~l--G-I~TigDLa~l~~~~L~~rf------G~~~g~~l~~~a~G~d~~ 303 (588)
+.+|||||+++++++.+-+ | +..+.+|..- .. +.+.| |++.+..+|+. |+..-
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~-~p-~l~ll~~v~GiG~k~a~~l~~~--Gi~tl 120 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESGHLRKLDHISES-VP-VLELFSNIWGAGTKTAQMWYQQ--GFRSL 120 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTT-HH-HHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCccHHHHHHHHHHHHcCCchHHHHHhhh-hH-HHHHHhcCCCcCHHHHHHHHHc--CCCCH
Confidence 5689999999999997422 2 4455555332 12 33444 44455666653 77643
No 77
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=24.85 E-value=57 Score=29.45 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCCCCCCCcHHHHHHHHHhhCCc---chhhhcc
Q 007824 246 PIKKMKQLGGKLGTSLQNELGVT---TVGDLLK 275 (588)
Q Consensus 246 PI~~l~GiG~k~~~~L~~~lGI~---TigDLa~ 275 (588)
.++.|.|||+.++..+.+.+||. .++||..
T Consensus 31 aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~ 63 (155)
T 2xzm_M 31 ALTGIRGIGRRFAYIICKVLKIDPNARAGLLTE 63 (155)
T ss_dssp HHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCH
T ss_pred eeecccccCHHHHHHHHHHcCCCcccccccCCH
Confidence 35789999999999998899995 4566554
No 78
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=24.15 E-value=83 Score=26.20 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccCCCCCCCCCcHH
Q 007824 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 256 (588)
Q Consensus 192 a~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~lPI~~l~GiG~k 256 (588)
.+..|+++.++.|++..+ |-++.+|-.||... |.+..+++ .|.|||..
T Consensus 21 L~~wR~~~A~~~~vP~y~-If~D~tL~emA~~~----------P~t~~eL~------~I~Gvg~~ 68 (103)
T 2e1f_A 21 LVEARQKHANKMDVPPAI-LATNKILVDMAKMR----------PTTVENVK------RIDGVSEG 68 (103)
T ss_dssp HHHHHHHHHHHHTSCHHH-HCCHHHHHHHHHHC----------CCSHHHHT------TSTTCCHH
T ss_pred HHHHHHHHHHHcCCCCCe-eECHHHHHHHHHhC----------CCCHHHHh------cCCCCCHH
Confidence 678899999999999886 88999999999764 44555555 78899964
No 79
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=23.84 E-value=39 Score=27.66 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=20.1
Q ss_pred CCCCCCcHHHHHHHHHhh----CCcchhhhccC
Q 007824 248 KKMKQLGGKLGTSLQNEL----GVTTVGDLLKF 276 (588)
Q Consensus 248 ~~l~GiG~k~~~~L~~~l----GI~TigDLa~l 276 (588)
..|+|||.+++++|.+.. .+.++.||.++
T Consensus 43 ~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v 75 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV 75 (98)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred HHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhC
Confidence 457899998888887443 35667777654
No 80
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.80 E-value=63 Score=29.07 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCCCCCcHHHHHHHHHhhCCc---chhhhcc
Q 007824 247 IKKMKQLGGKLGTSLQNELGVT---TVGDLLK 275 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~---TigDLa~ 275 (588)
++.|.|||+.++..+.+.+||. .++||..
T Consensus 30 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~ 61 (152)
T 3iz6_M 30 LTSIKGVGRRFSNIVCKKADIDMNKRAGELSA 61 (152)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCH
T ss_pred hhhccCcCHHHHHHHHHHcCCCCCcEeCcCCH
Confidence 5688999999999988899995 5666653
No 81
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=23.20 E-value=26 Score=33.72 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHH
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~ 282 (588)
+++|||||+|++.+|. -.|.+.+...+.
T Consensus 14 l~~LPGIG~KSA~RlA--------~hLL~~~~~~~~ 41 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA--------FHLFEQPREDIE 41 (228)
T ss_dssp HHTSTTCCHHHHHHHH--------HHHSSSCHHHHH
T ss_pred HhHCCCCCHHHHHHHH--------HHHHcCCHHHHH
Confidence 4578999999999996 345555555443
No 82
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=22.50 E-value=55 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=22.7
Q ss_pred CCCCCCCcHHHHHHHHHhhCCcc---hhhhc
Q 007824 247 IKKMKQLGGKLGTSLQNELGVTT---VGDLL 274 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~T---igDLa 274 (588)
++.|.|||+.++..+.+.+||.. ++||.
T Consensus 19 Lt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt 49 (126)
T 2vqe_M 19 LTYIYGIGKARAKEALEKTGINPATRVKDLT 49 (126)
T ss_dssp HTTSSSCCSHHHHHHTTTTTCCTTSBGGGCC
T ss_pred hhccccccHHHHHHHHHHcCCCcccccCcCC
Confidence 47899999999999988899954 55554
No 83
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.33 E-value=62 Score=29.00 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCCCCCcHHHHHHHHHhhCCc---chhhhcc
Q 007824 247 IKKMKQLGGKLGTSLQNELGVT---TVGDLLK 275 (588)
Q Consensus 247 I~~l~GiG~k~~~~L~~~lGI~---TigDLa~ 275 (588)
|+.|.|||+.++..+.+.+||. .++||..
T Consensus 25 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~ 56 (148)
T 3j20_O 25 LTAIKGIGINFATMVCRVAGLDPFMKAGYLTD 56 (148)
T ss_dssp HHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCH
T ss_pred hhhccCcCHHHHHHHHHHhCCCCCceeccCCH
Confidence 4678999999999998899995 4666554
No 84
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=20.29 E-value=22 Score=36.32 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHH--HHhCcchHHHHH
Q 007824 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ--ESYGFNTGTWLW 294 (588)
Q Consensus 245 lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~--~rfG~~~g~~l~ 294 (588)
.||.+| .+.-+...-|. +.||+|++||.+.+...|. +.||.+....+.
T Consensus 255 ~~I~eL-eLsvRs~NCLK-ra~I~tv~dL~~~se~dLlki~n~G~kSl~EI~ 304 (329)
T 3lu0_A 255 RPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 (329)
T ss_dssp ----------------------------------------------------
T ss_pred hhHHhh-cCCHHHHHHHH-HcCCcCHHHHhhCCHHHHhhCcCCChhhHHHHH
Confidence 478888 57778888887 8999999999999988875 447876444333
Done!