Query 007826
Match_columns 588
No_of_seqs 309 out of 1530
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 15:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 4.6E-46 1E-50 389.3 34.2 379 10-582 2-384 (385)
2 TIGR00946 2a69 he Auxin Efflux 100.0 4.5E-43 9.7E-48 361.8 34.6 308 9-587 5-321 (321)
3 PRK09903 putative transporter 100.0 7.7E-43 1.7E-47 360.1 34.8 299 9-584 4-309 (314)
4 COG0679 Predicted permeases [G 100.0 9E-42 2E-46 353.0 36.8 304 7-586 2-308 (311)
5 KOG2722 Predicted membrane pro 99.8 6.2E-19 1.3E-23 184.7 14.2 155 431-586 237-404 (408)
6 TIGR00841 bass bile acid trans 99.0 2.8E-09 6.1E-14 110.1 13.1 108 479-586 12-121 (286)
7 TIGR00832 acr3 arsenical-resis 98.6 2.4E-06 5.2E-11 90.3 17.7 143 436-585 4-156 (328)
8 COG0385 Predicted Na+-dependen 98.5 2.7E-06 5.9E-11 89.7 15.4 109 478-586 41-151 (319)
9 PF01758 SBF: Sodium Bile acid 98.4 3.9E-06 8.5E-11 81.4 13.8 99 480-578 3-103 (187)
10 PF13593 DUF4137: SBF-like CPA 97.9 0.00022 4.7E-09 75.2 13.9 140 442-586 1-147 (313)
11 COG0798 ACR3 Arsenite efflux p 97.1 0.01 2.2E-07 63.4 14.7 147 433-587 9-166 (342)
12 PF05684 DUF819: Protein of un 96.8 1.1 2.3E-05 49.0 28.1 136 11-154 22-167 (378)
13 PF04172 LrgB: LrgB-like famil 96.3 0.11 2.5E-06 52.5 14.9 138 432-578 11-150 (215)
14 PRK10711 hypothetical protein; 96.2 0.12 2.5E-06 53.0 14.4 134 436-577 26-160 (231)
15 PRK04288 antiholin-like protei 96.2 0.19 4E-06 51.6 15.4 134 437-578 32-166 (232)
16 TIGR00659 conserved hypothetic 96.0 0.22 4.9E-06 50.8 14.9 133 436-576 25-158 (226)
17 COG1346 LrgB Putative effector 95.4 0.48 1E-05 48.5 14.5 135 432-576 24-161 (230)
18 TIGR00841 bass bile acid trans 94.9 0.25 5.4E-06 51.5 11.3 130 14-151 140-275 (286)
19 PF03601 Cons_hypoth698: Conse 94.3 0.85 1.8E-05 48.5 13.7 131 439-575 24-155 (305)
20 COG3329 Predicted permease [Ge 94.1 8.7 0.00019 41.3 20.3 63 430-495 205-267 (372)
21 TIGR00783 ccs citrate carrier 92.4 0.51 1.1E-05 51.1 8.5 99 16-117 206-315 (347)
22 PRK03659 glutathione-regulated 91.9 5.6 0.00012 45.8 16.7 128 441-576 237-366 (601)
23 PRK03562 glutathione-regulated 91.0 7.6 0.00017 45.0 16.6 128 441-576 240-369 (621)
24 COG2855 Predicted membrane pro 90.2 2.5 5.3E-05 45.7 10.8 126 443-575 39-164 (334)
25 PF13593 DUF4137: SBF-like CPA 88.6 12 0.00025 39.9 14.5 123 10-142 164-299 (313)
26 PF03812 KdgT: 2-keto-3-deoxyg 88.0 7.3 0.00016 41.8 12.4 115 444-567 15-143 (314)
27 PRK03562 glutathione-regulated 87.3 19 0.00041 41.8 16.3 118 432-557 20-139 (621)
28 TIGR00698 conserved hypothetic 87.1 6.4 0.00014 42.6 11.5 90 441-535 31-121 (335)
29 COG5505 Predicted integral mem 86.6 6 0.00013 42.6 10.7 117 445-575 251-367 (384)
30 PRK10669 putative cation:proto 86.5 22 0.00048 40.4 16.0 128 441-576 248-377 (558)
31 PRK12460 2-keto-3-deoxyglucona 82.5 8.8 0.00019 41.2 9.9 81 444-534 169-249 (312)
32 KOG2718 Na+-bile acid cotransp 81.4 1.6 3.4E-05 47.8 4.0 108 479-586 117-226 (371)
33 PRK12460 2-keto-3-deoxyglucona 79.6 7.8 0.00017 41.6 8.3 86 479-567 49-138 (312)
34 TIGR00932 2a37 transporter, mo 79.2 78 0.0017 32.3 16.9 93 432-533 7-102 (273)
35 PRK10669 putative cation:proto 78.7 69 0.0015 36.5 16.1 92 433-532 22-114 (558)
36 PRK03659 glutathione-regulated 78.4 92 0.002 36.1 17.1 115 435-557 23-139 (601)
37 TIGR00793 kdgT 2-keto-3-deoxyg 77.6 5.8 0.00012 42.5 6.6 85 480-567 50-143 (314)
38 TIGR00844 c_cpa1 na(+)/h(+) an 77.0 1E+02 0.0022 37.4 17.1 93 434-532 30-130 (810)
39 TIGR03082 Gneg_AbrB_dup membra 74.7 81 0.0017 30.1 15.8 120 438-569 15-139 (156)
40 PLN03159 cation/H(+) antiporte 74.5 1.1E+02 0.0024 37.1 16.9 85 439-528 64-157 (832)
41 COG0475 KefB Kef-type K+ trans 74.4 84 0.0018 34.6 14.8 130 437-573 25-158 (397)
42 COG0385 Predicted Na+-dependen 73.2 29 0.00063 37.5 10.5 122 10-143 167-296 (319)
43 PRK05326 potassium/proton anti 72.3 83 0.0018 36.0 14.6 94 433-533 22-118 (562)
44 PF03390 2HCT: 2-hydroxycarbox 70.8 22 0.00048 39.7 9.2 88 27-116 283-381 (414)
45 TIGR00832 acr3 arsenical-resis 69.6 30 0.00065 37.1 9.8 74 509-582 251-324 (328)
46 PF05982 DUF897: Domain of unk 61.6 2.5E+02 0.0054 30.7 23.4 105 431-543 166-275 (327)
47 COG0798 ACR3 Arsenite efflux p 55.9 1.3E+02 0.0029 32.9 11.5 137 11-154 183-328 (342)
48 PLN03159 cation/H(+) antiporte 55.6 1E+02 0.0022 37.3 11.8 131 16-153 295-437 (832)
49 PRK15060 L-dehydroascorbate tr 53.4 3.7E+02 0.0081 30.2 16.1 124 430-569 262-397 (425)
50 KOG4821 Predicted Na+-dependen 52.4 25 0.00054 36.3 5.1 94 480-576 59-157 (287)
51 PRK05326 potassium/proton anti 49.0 1.7E+02 0.0037 33.5 11.7 109 440-555 243-351 (562)
52 PRK09528 lacY galactoside perm 48.5 3.4E+02 0.0075 28.8 13.3 53 116-168 367-419 (420)
53 TIGR00844 c_cpa1 na(+)/h(+) an 47.6 2.2E+02 0.0047 34.8 12.5 109 442-555 265-379 (810)
54 COG0475 KefB Kef-type K+ trans 46.7 4.4E+02 0.0095 29.1 15.7 53 439-496 241-294 (397)
55 PF05684 DUF819: Protein of un 45.5 4.6E+02 0.0099 28.9 15.7 129 441-576 25-158 (378)
56 COG3493 CitS Na+/citrate sympo 42.8 1.4E+02 0.003 33.5 9.2 88 16-106 292-387 (438)
57 COG3180 AbrB Putative ammonia 40.8 5.4E+02 0.012 28.5 16.4 128 432-571 199-331 (352)
58 KOG0318 WD40 repeat stress pro 40.3 18 0.00039 41.3 2.2 65 188-252 452-523 (603)
59 PRK03818 putative transporter; 36.9 7.2E+02 0.016 28.8 14.4 85 447-537 36-124 (552)
60 TIGR00783 ccs citrate carrier 36.6 3.4E+02 0.0073 29.9 11.0 98 32-131 7-117 (347)
61 PRK05274 2-keto-3-deoxyglucona 35.3 1E+02 0.0022 33.4 6.8 120 446-575 178-300 (326)
62 PF11299 DUF3100: Protein of u 34.6 98 0.0021 32.3 6.2 117 439-565 19-142 (241)
63 TIGR03802 Asp_Ala_antiprt aspa 34.3 4E+02 0.0087 30.9 11.8 80 448-539 42-123 (562)
64 TIGR03113 exosortase_2 exosort 33.9 1E+02 0.0022 32.6 6.3 105 445-550 91-217 (268)
65 TIGR00698 conserved hypothetic 29.9 3.5E+02 0.0076 29.5 9.8 63 442-510 251-314 (335)
66 COG3180 AbrB Putative ammonia 29.7 8.1E+02 0.017 27.1 15.9 63 502-568 86-149 (352)
67 TIGR02123 TRAP_fused TRAP tran 27.6 1.1E+03 0.023 27.9 15.5 41 526-566 464-510 (613)
68 PF05145 AmoA: Putative ammoni 26.6 8.2E+02 0.018 26.2 16.6 120 439-570 173-297 (318)
69 TIGR03109 exosortase_1 exosort 26.5 2.1E+02 0.0045 30.1 7.2 88 462-550 127-218 (267)
70 PF03547 Mem_trans: Membrane t 25.8 8.2E+02 0.018 25.9 12.8 99 442-546 7-105 (385)
71 COG2978 AbgT Putative p-aminob 25.8 9.3E+02 0.02 27.9 12.3 41 20-61 97-138 (516)
72 COG3329 Predicted permease [Ge 25.0 8.3E+02 0.018 26.9 11.2 51 430-490 6-56 (372)
73 PF12273 RCR: Chitin synthesis 24.8 68 0.0015 29.7 3.0 24 69-92 2-25 (130)
74 COG0025 NhaP NhaP-type Na+/H+ 24.2 1E+03 0.022 26.5 12.9 83 478-563 64-149 (429)
75 TIGR00831 a_cpa1 Na+/H+ antipo 23.8 2.2E+02 0.0048 32.5 7.4 74 16-92 24-100 (525)
76 TIGR00807 malonate_madL malona 23.3 5.1E+02 0.011 24.6 8.2 76 15-94 38-117 (125)
77 PF03806 ABG_transport: AbgT p 23.3 1.1E+03 0.024 27.3 12.5 42 521-562 411-461 (502)
78 PF03956 DUF340: Membrane prot 23.2 3.8E+02 0.0082 26.8 8.0 44 445-496 2-45 (191)
79 PF11712 Vma12: Endoplasmic re 23.0 4.3E+02 0.0093 24.8 8.0 24 6-29 78-101 (142)
80 COG1968 BacA Undecaprenyl pyro 21.4 1E+03 0.022 25.4 13.0 109 465-575 104-229 (270)
81 PF04024 PspC: PspC domain; I 21.3 2E+02 0.0043 23.7 4.7 26 552-577 19-44 (61)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.6e-46 Score=389.26 Aligned_cols=379 Identities=31% Similarity=0.442 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCC-CCCc-cHHHHHHH-HHHHHHHHHHH
Q 007826 10 VLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTND-PYSM-NFKFILAD-TVQKIIVLLLL 86 (588)
Q Consensus 10 ILsivlPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~d-l~~v-~~~lllay-~lg~livfll~ 86 (588)
+++.++|+|+++++||+++|+ |++++++.+.+|++|+|+++|||+|.++++.+ .+++ ++.++..+ .+..++.+++.
T Consensus 2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999995 99999999999999999999999999999965 4444 55444433 34444445555
Q ss_pred HHHHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 007826 87 AIWSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQF 165 (588)
Q Consensus 87 ~llar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvLlE~~~~~~~~~~~~ 165 (588)
+++.|+++.++.+ .++..+ ++|+|++++|+|++..+||+++..++.+...++++++++++..++|.+++++...|+.
T Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFRLPKEW--RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcCCCccc--ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 6666655554444 577777 9999999999999999999999999999999999999999999999987777666777
Q ss_pred CCCccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcchhhhhcCCCCCCCCCccCCCCCCCCccccccc
Q 007826 166 PDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYSL 245 (588)
Q Consensus 166 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
++++.++.+.++|++....++++|.++|.+.+||++.|.+.+...+++.+..+ .+|+++|.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------- 220 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS-----------TSPSPSNST------- 220 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc-----------cCCcccccc-------
Confidence 76677778888999999999999999999999999988877665554443332 011111000
Q ss_pred cCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCCCCCCCcccCCccccCCccCCCCCCCCCCCCCCccCCccccccc
Q 007826 246 QSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRK 325 (588)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (588)
T Consensus 221 -------------------------------------------------------------------------------- 220 (385)
T PF03547_consen 221 -------------------------------------------------------------------------------- 220 (385)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccceeeecCCCCCCCCCCccccccCCCCCCcccccccccCcCccccCCCCCCCCCCCCCCcccccCCCCccc
Q 007826 326 ANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTTE 405 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (588)
T Consensus 221 -------------------------------------------------------------------------------- 220 (385)
T PF03547_consen 221 -------------------------------------------------------------------------------- 220 (385)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCCchhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHH
Q 007826 406 LNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAM 485 (588)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLAL 485 (588)
..+.+ .+.+.+..++..+++.++||++++.++|+++++.+....+.+|+++.+.++++|++++|++|
T Consensus 221 -------~~~~~------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l 287 (385)
T PF03547_consen 221 -------GAEQK------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLAL 287 (385)
T ss_pred -------hhhhh------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHH
Confidence 00000 01124456777888899999999999999999993322333449999999999999999999
Q ss_pred HHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHH
Q 007826 486 FSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILS 565 (588)
Q Consensus 486 f~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAA 565 (588)
|++|+.|+..+......++.....++.|+++.|++++++++++++++....++++++++|+|++.+++|++|+.+++.++
T Consensus 288 ~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s 367 (385)
T PF03547_consen 288 FVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEAS 367 (385)
T ss_pred HHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHH
Confidence 99999999864332345666677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007826 566 TAVIFGMLVALPITLVY 582 (588)
Q Consensus 566 s~V~lSTLLSLpi~i~l 582 (588)
..+++||+++++++.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 368 SIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998655544
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=4.5e-43 Score=361.85 Aligned_cols=308 Identities=40% Similarity=0.561 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCCCC--Cc-cHHHHHHHHHHHHHHHH
Q 007826 9 HVLTAVVPLYVAMILAYGS-VKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPY--SM-NFKFILADTVQKIIVLL 84 (588)
Q Consensus 9 ~ILsivlPIFlLIalGyla-~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~dl~--~v-~~~lllay~lg~livfl 84 (588)
.+++.++|+|++|++||++ +| +|++++++.+.+|++|+|+++||++|.++++.+.+ +. .+.+++....+.++.|+
T Consensus 5 ~~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T TIGR00946 5 VILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYA 83 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999 69 49999999999999999999999999999998885 34 66776666667777787
Q ss_pred HHHHHHH-HhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhcccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007826 85 LLAIWSK-LSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDYSGS---LMVQIVVLQCIIWYTLMLFLFEYRGARM 159 (588)
Q Consensus 85 l~~llar-~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~a~~---~valiv~v~~lIl~Pl~lvLlE~~~~~~ 159 (588)
+.+.++| ++++++++ .+.+.+ ++++|++|+|+|++..+||+++.. +.....+.+.++.+.++..+...
T Consensus 84 l~~~~~~~~~~~~~~~--~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 156 (321)
T TIGR00946 84 LIWLITKPLFKADYGK--LSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSE----- 156 (321)
T ss_pred HHHHHHHHHHhcccch--hhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhcc-----
Confidence 7777777 45555555 688888 999999999999999999999953 22222222222222222111000
Q ss_pred hhhhcCCCCccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcchhhhhcCCCCCCCCCccCCCCCCCCc
Q 007826 160 LIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTN 239 (588)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T Consensus 157 -------------------------------------------------------------------------------- 156 (321)
T TIGR00946 157 -------------------------------------------------------------------------------- 156 (321)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCCCCCCCcccCCccccCCccCCCCCCCCCCCCCCccCCc
Q 007826 240 CEIYSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPV 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (588)
T Consensus 157 -------------------------------------------------------------------------------- 156 (321)
T TIGR00946 157 -------------------------------------------------------------------------------- 156 (321)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCcccceeeecCCCCCCCCCCccccccCCCCCCcccccccccCcCccccCCCCCCCCCCCCCCcccccC
Q 007826 320 SGAMRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLG 399 (588)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (588)
. +. ++++
T Consensus 157 -----------------------------~--------~~--------------------~~~~---------------- 163 (321)
T TIGR00946 157 -----------------------------D--------GA--------------------GGEG---------------- 163 (321)
T ss_pred -----------------------------c--------cc--------------------cccc----------------
Confidence 0 00 0000
Q ss_pred CCCcccCCcccccCCCCCCCCCCCchhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 007826 400 SSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDA 479 (588)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~a 479 (588)
+++ ..++.+++.+|++++||+++|+++|++++.+ ++++|+++.++++++|++
T Consensus 164 -------------~~~-----------~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~ 215 (321)
T TIGR00946 164 -------------SGE-----------STRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGA 215 (321)
T ss_pred -------------cch-----------hHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHH
Confidence 000 0112456788999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCC
Q 007826 480 GLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNV 559 (588)
Q Consensus 480 a~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~ 559 (588)
++|++|+++|+++...+ .+.+++..+..+++|++++|++++++..++++++...+++++++|||+|++++++|++||.
T Consensus 216 ~~plaLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~ 293 (321)
T TIGR00946 216 TTPMALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEV 293 (321)
T ss_pred HHHHHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCC
Confidence 99999999999998764 3456788899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007826 560 HPDILSTAVIFGMLVALPITLVYYILLG 587 (588)
Q Consensus 560 d~elAAs~V~lSTLLSLpi~i~l~lLLg 587 (588)
|++++++.+++||++|+.++..|..++|
T Consensus 294 ~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 294 DVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999855555555554
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=7.7e-43 Score=360.07 Aligned_cols=299 Identities=19% Similarity=0.305 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCCCCCc--cHHHHHHHHHHHHHHHHHH
Q 007826 9 HVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSM--NFKFILADTVQKIIVLLLL 86 (588)
Q Consensus 9 ~ILsivlPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~dl~~v--~~~lllay~lg~livfll~ 86 (588)
.+++.++|+|++|++||+++| ++++++++.+.+||+|+|+++||++|+++++.+.++. ++.+++...++.++.+++.
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 478889999999999999999 5999999999999999999999999999999887655 6777777777777777766
Q ss_pred HHHHHHh-cCCCCchhhhhhhh-hcCCccccchHHHHHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007826 87 AIWSKLS-SSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDYSG--SLMVQIVVLQCIIWYTLMLFLFEYRGARMLIA 162 (588)
Q Consensus 87 ~llar~~-~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~a~--~~valiv~v~~lIl~Pl~lvLlE~~~~~~~~~ 162 (588)
++..+.+ ++++.+ .....+ ++++|++|+|+|++..+||+++. .+.+....++++++++++..+++..+
T Consensus 83 ~~~~~~~~~~~~~~--~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~------ 154 (314)
T PRK09903 83 WFGCYKFFKRTHAE--AAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSS------ 154 (314)
T ss_pred HHHHHHHhcCCcch--hhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHcccc------
Confidence 6665533 443334 567777 99999999999999999999943 23444556678888887765543100
Q ss_pred hcCCCCccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcchhhhhcCCCCCCCCCccCCCCCCCCcccc
Q 007826 163 EQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEI 242 (588)
Q Consensus 163 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T Consensus 155 -------------------------------------------------------------------------------- 154 (314)
T PRK09903 155 -------------------------------------------------------------------------------- 154 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCCCCCCCcccCCccccCCccCCCCCCCCCCCCCCccCCcccc
Q 007826 243 YSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGA 322 (588)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (588)
T Consensus 155 -------------------------------------------------------------------------------- 154 (314)
T PRK09903 155 -------------------------------------------------------------------------------- 154 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCcccceeeecCCCCCCCCCCccccccCCCCCCcccccccccCcCccccCCCCCCCCCCCCCCcccccCCCC
Q 007826 323 MRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSS 402 (588)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (588)
. +
T Consensus 155 --------------------------~--------~-------------------------------------------- 156 (314)
T PRK09903 155 --------------------------G--------A-------------------------------------------- 156 (314)
T ss_pred --------------------------c--------c--------------------------------------------
Confidence 0 0
Q ss_pred cccCCcccccCCCCCCCCCCCchhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHH
Q 007826 403 TTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLG 482 (588)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~P 482 (588)
.++ . ...++.+|+++|||+++|+++|++++++ ++++|++++++++++|++++|
T Consensus 157 ----------~~~--~-----------~~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~P 209 (314)
T PRK09903 157 ----------DGK--K-----------NSNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSG 209 (314)
T ss_pred ----------ccc--c-----------chHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHH
Confidence 000 0 0113567788999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChh
Q 007826 483 MAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPD 562 (588)
Q Consensus 483 LALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~e 562 (588)
++|+++|++|+..+. + ..++.+..+++|++++|+++++++.++++++.+.+++++++|||+|++++++|++||.|++
T Consensus 210 laL~~iG~~L~~~~~--~-~~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~ 286 (314)
T PRK09903 210 VAVFAAGLTLAAHKF--E-FSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTR 286 (314)
T ss_pred HHHHHHHHHHhhccc--c-ccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHH
Confidence 999999999998642 2 3456778899999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Q 007826 563 ILSTAVIFGMLVAL-PITLVYYI 584 (588)
Q Consensus 563 lAAs~V~lSTLLSL-pi~i~l~l 584 (588)
+++.++++||++|+ ++++|+++
T Consensus 287 ~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 287 TGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 55555543
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=9e-42 Score=352.95 Aligned_cols=304 Identities=24% Similarity=0.496 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHHHHHH
Q 007826 7 LYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSM-NFKFILADTVQKIIVLLL 85 (588)
Q Consensus 7 M~~ILsivlPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~dl~~v-~~~lllay~lg~livfll 85 (588)
|..++..++|||++|++||+++|. +.++++..+.+|++|+|+++|||+|+++++.+.+.. ++.++..++.++++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999995 999999999999999999999999999999999988 999999999999999988
Q ss_pred HHHHHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 007826 86 LAIWSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQ 164 (588)
Q Consensus 86 ~~llar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvLlE~~~~~~~~~~~ 164 (588)
.+++.|+++++++++ .++..+ +.|+|++++|+|++..+||++++.+.++....+++++..++...++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------ 153 (311)
T COG0679 81 LALIGRFLFKLDKRE-TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------ 153 (311)
T ss_pred HHHHHHHHhccchhh-HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 888877765544443 567777 999999999999999999999999999999999999888887766531000
Q ss_pred CCCCccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcchhhhhcCCCCCCCCCccCCCCCCCCcccccc
Q 007826 165 FPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYS 244 (588)
Q Consensus 165 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T Consensus 154 -------------------------------------------------------------------------------- 153 (311)
T COG0679 154 -------------------------------------------------------------------------------- 153 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCCCCCCCcccCCccccCCccCCCCCCCCCCCCCCccCCcccccc
Q 007826 245 LQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMR 324 (588)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (588)
T Consensus 154 -------------------------------------------------------------------------------- 153 (311)
T COG0679 154 -------------------------------------------------------------------------------- 153 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccceeeecCCCCCCCCCCccccccCCCCCCcccccccccCcCccccCCCCCCCCCCCCCCcccccCCCCcc
Q 007826 325 KANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTT 404 (588)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (588)
+
T Consensus 154 ---------------------------------------------------------~---------------------- 154 (311)
T COG0679 154 ---------------------------------------------------------T---------------------- 154 (311)
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred cCCcccccCCCCCCCCCCCchhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHH
Q 007826 405 ELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMA 484 (588)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLA 484 (588)
+ ...+...|++++||+++|.++|++++.. ++++|+++++++++++++++|++
T Consensus 155 --------~----------------~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~ 206 (311)
T COG0679 155 --------N----------------KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLA 206 (311)
T ss_pred --------h----------------hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHH
Confidence 0 1356678899999999999999999999 99999999999999999999999
Q ss_pred HHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHH
Q 007826 485 MFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDIL 564 (588)
Q Consensus 485 Lf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elA 564 (588)
|+++|++|+..+ .++...+..+.....|++++|++++++.+++|++++..+++++++|||+|++++++|++||.|++++
T Consensus 207 li~lG~~L~~~~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~la 285 (311)
T COG0679 207 LIALGLSLAFLK-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLA 285 (311)
T ss_pred HHHHhhhcchhh-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHH
Confidence 999999999953 2233455566667779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHh
Q 007826 565 STAVIFGMLVAL-PITLVYYILL 586 (588)
Q Consensus 565 As~V~lSTLLSL-pi~i~l~lLL 586 (588)
++.+++||++|+ +++.+++.+.
T Consensus 286 a~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 286 ASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999997 5556666554
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.79 E-value=6.2e-19 Score=184.67 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHhhh-c---CCCCCc-HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhH
Q 007826 431 ILIMVWRKLIRNPNTYSSLIGLTWSLVSF-R---WHVEMP-AIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTI 505 (588)
Q Consensus 431 ~lk~vlk~ilkNP~IIAiILGLilsllg~-~---~gi~LP-~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~ 505 (588)
..+..+|.+ .+|+.+|.++|+++...+. + ++-.=| .++.+.+.++|+.++|+.++++|..|....++...+.+.
T Consensus 237 ~~~~~L~~i-~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~ 315 (408)
T KOG2722|consen 237 SEKVILKEI-FAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSV 315 (408)
T ss_pred hHHhhHHHh-cCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceE
Confidence 455566664 6999999999999987742 2 222222 589999999999999999999999998864333334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---h---C-CChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHH-HH
Q 007826 506 ATFAMGVRFLVGPAVMAAASMA---V---G-LRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVA-LP 577 (588)
Q Consensus 506 vl~~sllKLIV~PlLa~ll~~l---L---g-L~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLS-Lp 577 (588)
++.+.+.|+++.|....++... + . -|+..+.+++|+.++|+|++.-.+|+.+|..++++|.+.+|+.++. ++
T Consensus 316 iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ 395 (408)
T KOG2722|consen 316 IIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLS 395 (408)
T ss_pred EEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 6668889999999988877542 2 3 4788999999999999999999999999999999999999999875 46
Q ss_pred HHHHHHHHh
Q 007826 578 ITLVYYILL 586 (588)
Q Consensus 578 i~i~l~lLL 586 (588)
+.+|..+.+
T Consensus 396 ltvw~~~f~ 404 (408)
T KOG2722|consen 396 LTVWSVFFL 404 (408)
T ss_pred HHHHHHHHH
Confidence 666654443
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.02 E-value=2.8e-09 Score=110.05 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHc
Q 007826 479 AGLGMAMFSLGLFMALQPRII-ACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEY 557 (588)
Q Consensus 479 aa~PLALf~IG~sLa~~~~~~-~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Y 557 (588)
....++|+.+|+++...+... ..+.+......+.|++++|++++++..++++++.....+++++++|++.++++++++|
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 347889999999999875321 2234567788889999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 007826 558 NVHPDILSTAVIFGMLVAL-PITLVYYILL 586 (588)
Q Consensus 558 g~d~elAAs~V~lSTLLSL-pi~i~l~lLL 586 (588)
|+|.++++..+.+||++|+ .++++++++.
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~~ 121 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLLYIYA 121 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 5555555443
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.57 E-value=2.4e-06 Score=90.34 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=106.1
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHH-HHHHhHHH------HHHHHHhhhcccchhh-hhcchhHHH
Q 007826 436 WRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIA-ILSDAGLG------MAMFSLGLFMALQPRI-IACGNTIAT 507 (588)
Q Consensus 436 lk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~-~LG~aa~P------LALf~IG~sLa~~~~~-~~~~~k~vl 507 (588)
+++.+....++++++|+++... .|......-. .+.....| +.|+.+|+.|..++.+ ..+++|...
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~ 76 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLI 76 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHH
Confidence 4455666677888888888776 3433221111 11223333 4677777888766522 234678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH-HHHHHHHHH
Q 007826 508 FAMGVRFLVGPAVMAAASMAV-GLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL-PITLVYYIL 585 (588)
Q Consensus 508 ~~sllKLIV~PlLa~ll~~lL-gL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL-pi~i~l~lL 585 (588)
...+..++++|+++|++++++ +++++...-+++.+++|.+..+.+++...|+|..++-..+.++|++++ .++.+.+++
T Consensus 77 ~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 77 LSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 999999999999999999999999999999999999999999999985 333433333
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.49 E-value=2.7e-06 Score=89.66 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=91.1
Q ss_pred HhHHHHHHHHHhhhcccchhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHH
Q 007826 478 DAGLGMAMFSLGLFMALQPRI-IACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKE 556 (588)
Q Consensus 478 ~aa~PLALf~IG~sLa~~~~~-~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~ 556 (588)
.....+.||..|..|...+.. ...+++..++..+..++++|++++++++++++|++...-+++.+++|.++.+.+++.-
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l 120 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL 120 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence 455566667777777665421 2346889999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 007826 557 YNVHPDILSTAVIFGMLVAL-PITLVYYILL 586 (588)
Q Consensus 557 Yg~d~elAAs~V~lSTLLSL-pi~i~l~lLL 586 (588)
+++|..++-....+||+++. .++++..++.
T Consensus 121 AkGnValsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 121 AKGNVALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999996 4555444444
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.43 E-value=3.9e-06 Score=81.35 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhcccchhh-hhcchhHHHHHHHHHHHHHHHHHHHHH-HHhCCChhHHHHHHHHhccchhhhHHHHHHHc
Q 007826 480 GLGMAMFSLGLFMALQPRI-IACGNTIATFAMGVRFLVGPAVMAAAS-MAVGLRGSLLHVAIVQAALPQGIVPFVFAKEY 557 (588)
Q Consensus 480 a~PLALf~IG~sLa~~~~~-~~~~~k~vl~~sllKLIV~PlLa~ll~-~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Y 557 (588)
...+.||.+|.++..++.. ..++.+.+....+.+++++|++++++. .++++++.....+++++++|.+..+.+++...
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~ 82 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLA 82 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHT
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 3567889999999887522 123456677789999999999999999 88999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 007826 558 NVHPDILSTAVIFGMLVALPI 578 (588)
Q Consensus 558 g~d~elAAs~V~lSTLLSLpi 578 (588)
|+|..++.+.+.++|++++.+
T Consensus 83 ~Gd~~ls~~lt~istll~~~~ 103 (187)
T PF01758_consen 83 GGDVALSVSLTLISTLLAPFL 103 (187)
T ss_dssp T--HHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccceeeHHHHHHHHH
Confidence 999999999999999999633
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.87 E-value=0.00022 Score=75.19 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCcHHHHHHH--HHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHHHHHHH
Q 007826 442 NPNTYSSLIGLTWSLVSFRWHVEMPAIIARSI--AILSDAGLGMAMFSLGLFMALQPRII-ACGNTIATFAMGVRFLVGP 518 (588)
Q Consensus 442 NP~IIAiILGLilsllg~~~gi~LP~~L~~~L--~~LG~aa~PLALf~IG~sLa~~~~~~-~~~~k~vl~~sllKLIV~P 518 (588)
|+.++++++++++... +|-|+.....+ +......+.+..|.-|++|...+... ..+++........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567788888887776 23343332333 25556668999999999999875222 3467888889999999999
Q ss_pred HHHHHHHHHhC--CChhHHHHHHHHhccchhhh-HHHHHHHcCCChhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 007826 519 AVMAAASMAVG--LRGSLLHVAIVQAALPQGIV-PFVFAKEYNVHPDILSTAVIFGMLVAL-PITLVYYILL 586 (588)
Q Consensus 519 lLa~ll~~lLg--L~~~~~~vlVLlAAmPtAv~-~~I~A~~Yg~d~elAAs~V~lSTLLSL-pi~i~l~lLL 586 (588)
++++++..+++ .+++...-+++.+++|+.+. +.++++.-|+|...|-....+|+++++ .+++++.+++
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 99999988773 68889999999999999855 467999999999999999999999996 5555555554
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.01 Score=63.39 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=106.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHH--HHHHhHHHHHHHHHhhh----c--ccch-hhhhcch
Q 007826 433 IMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIA--ILSDAGLGMAMFSLGLF----M--ALQP-RIIACGN 503 (588)
Q Consensus 433 k~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~--~LG~aa~PLALf~IG~s----L--a~~~-~~~~~~~ 503 (588)
.+.+.+.+.-=+++++++|+.+... .|+ +.+.++ .+++..+|++.-.+=|. + ...+ +....+.
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~ 80 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP 80 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence 3455665555588899999887765 555 344444 45566666654333321 1 1111 1123457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHHH-HHHH
Q 007826 504 TIATFAMGVRFLVGPAVMAAASMA-VGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALP-ITLV 581 (588)
Q Consensus 504 k~vl~~sllKLIV~PlLa~ll~~l-LgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSLp-i~i~ 581 (588)
|......+.-.++.|++++.++++ ++..++.+.-+++....|+-.++.+.+..-++|.|+++..|.++.++.+. ...+
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999875 46778899999999999999999999999999999999999999999973 3344
Q ss_pred HHHHhc
Q 007826 582 YYILLG 587 (588)
Q Consensus 582 l~lLLg 587 (588)
.+++++
T Consensus 161 ~~~~l~ 166 (342)
T COG0798 161 GKFFLG 166 (342)
T ss_pred HHHHHh
Confidence 555543
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.81 E-value=1.1 Score=49.00 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCCCCCc---cHHHHHHHHHHHHHHHHHHH
Q 007826 11 LTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSM---NFKFILADTVQKIIVLLLLA 87 (588)
Q Consensus 11 LsivlPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~dl~~v---~~~lllay~lg~livfll~~ 87 (588)
+..+=|+.+.+++|.++.-. |+++......+-++|..+.+|+.++.-+.+.|+.++ .++.++++.++++.+.+-..
T Consensus 22 f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 22 FKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred HhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44555888999999999995 999555556788999999999999999999999988 67999999999887766332
Q ss_pred HHHHHhcCC--CCchhhhhhhh-hcC----CccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 007826 88 IWSKLSSSG--SLEWSITLFSL-STL----PNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEY 154 (588)
Q Consensus 88 llar~~~~~--~~~~~aaV~aL-asf----sNt~fLGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvLlE~ 154 (588)
+-...++.. +..| ....++ ++| .|..-++ .+++-+. ......++.++++...-..+++-.
T Consensus 101 va~~l~~~~l~~~~w-k~ag~l~gsyiGGs~N~~Av~-----~al~~~~-~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGW-KIAGMLAGSYIGGSVNFVAVA-----EALGVSD-SLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHhhcccchHH-HHHHHHHhcccCchhHHHHHH-----HHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223221 2222 344444 555 3444333 3455543 457778889998877777666655
No 13
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=96.35 E-value=0.11 Score=52.50 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=99.4
Q ss_pred HHHHHHHHHhchhHHHHHHHH-HHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007826 432 LIMVWRKLIRNPNTYSSLIGL-TWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAM 510 (588)
Q Consensus 432 lk~vlk~ilkNP~IIAiILGL-ilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~s 510 (588)
+.+-+++.+.||++++.++-+ ++.++ +++..++. +.-+++...-.| +-.+++.-|+++++..+++++.+...+
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~-~gg~~l~~lLgP-atVALAvPLY~~~~~l~~~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLT----GIPYEDYM-QGGDILSFLLGP-ATVALAVPLYRQRRLLKKNWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHH----CCCHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667799999988744 44455 76665554 345666555444 478888888887656677888888888
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHh-ccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 007826 511 GVRFLVGPAVMAAASMAVGLRGSLLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPI 578 (588)
Q Consensus 511 llKLIV~PlLa~ll~~lLgL~~~~~~vlVLlA-AmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSLpi 578 (588)
..=-++.-...+.+++++|++++....+.-=+ ..|.|. -++++.|.++.+++..+++|=++...+
T Consensus 85 ~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi---~is~~iGG~~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 85 LVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAI---EISEQIGGIPSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHH---HHHHHhCChHHHHHHHHHHHhhHHHHh
Confidence 88888888888888999999987655444333 234333 579999999999999999998877433
No 14
>PRK10711 hypothetical protein; Provisional
Probab=96.24 E-value=0.12 Score=52.98 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=97.5
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHH
Q 007826 436 WRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFL 515 (588)
Q Consensus 436 lk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLI 515 (588)
.+..+.||++++.++-+.+-.. .+++-.++ .+..+++...-.| |-.+++.-|+++....|++++.+...+++=.+
T Consensus 26 ~~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~ 100 (231)
T PRK10711 26 FKFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSV 100 (231)
T ss_pred cCCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3667789999988766555443 26665555 4444666555544 45667778888765667788888888888888
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHh-ccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 007826 516 VGPAVMAAASMAVGLRGSLLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALP 577 (588)
Q Consensus 516 V~PlLa~ll~~lLgL~~~~~~vlVLlA-AmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSLp 577 (588)
+.-...+.+++++|+|++....+.--+ .+|.|. -.+++.|+++++++..+++|=++...
T Consensus 101 v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm---~is~~iGG~~sLta~~ViitGi~Ga~ 160 (231)
T PRK10711 101 VAMVTGTAVALWMGATPEIAASILPKSVTTPIAM---AVGGSIGGIPAISAVCVIFVGILGAV 160 (231)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHHH---HHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 888889999999999988665544433 234443 57899999999999999999887643
No 15
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=96.18 E-value=0.19 Score=51.60 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=94.5
Q ss_pred HHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHH
Q 007826 437 RKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLV 516 (588)
Q Consensus 437 k~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV 516 (588)
++.+.||+++++++-+.+-.. .+++..++ .+-.+++...-.| |-.+++.=|+++.+..|++++.+...+++=.++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 555689999988866655444 26655554 3444555444444 445666777777656677888888888888888
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHh-ccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 007826 517 GPAVMAAASMAVGLRGSLLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPI 578 (588)
Q Consensus 517 ~PlLa~ll~~lLgL~~~~~~vlVLlA-AmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSLpi 578 (588)
.-+..+.+++++|+|++....+.=-+ ..|. +.-.+++.|+++.+++..+++|=++...+
T Consensus 107 ~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPI---Am~is~~iGG~psLtA~~ViitGi~Gai~ 166 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMASMLPQAATTAI---ALPVSAGIGGIKEITSFAVIFNAVIIYAL 166 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhHhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 88888999999999997654443332 2333 33679999999999999999998876433
No 16
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.97 E-value=0.22 Score=50.83 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=93.7
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHH
Q 007826 436 WRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFL 515 (588)
Q Consensus 436 lk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLI 515 (588)
.++.+.||++++.++-+.+-.. .+++-.+. .+-.+++...-.| +..+++.-|.++++..+++++.+...+++=-+
T Consensus 25 ~~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~ 99 (226)
T TIGR00659 25 FKRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSV 99 (226)
T ss_pred cCCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999998866655444 16655554 4455555433333 55677777887765567778888888888778
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHh-ccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 007826 516 VGPAVMAAASMAVGLRGSLLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 516 V~PlLa~ll~~lLgL~~~~~~vlVLlA-AmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL 576 (588)
+.-...+.+++++|++++....+.--+ ..|.| .-.+++.|+++++++..+++|=++..
T Consensus 100 ~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiA---m~vs~~iGG~~sLta~~vvitGi~Ga 158 (226)
T TIGR00659 100 IAIISGTLLALLLGLGPEIIASLLPKSVTTPIA---MHVSEMIGGIPAVTAVFVILTGLLGT 158 (226)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHH---HHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 888888889999999987654333222 23333 35799999999999999999988764
No 17
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.35 E-value=0.48 Score=48.47 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=98.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHH
Q 007826 432 LIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMG 511 (588)
Q Consensus 432 lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sl 511 (588)
+.+=.|+.+.||.+++.++.+.+-.. .+++-.+. .+--+++-..--| |-.++..=|+.+....+++|+.+...++
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~Y-~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~ 98 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLLL---FGISYEDY-MKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVL 98 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHH---cCCCHHHH-hcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445678889999999887776655 26554443 3444555555556 6777788888876666788999988888
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhh---HHHHHHHcCCChhHHHHHHHHHHHHHH
Q 007826 512 VRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIV---PFVFAKEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 512 lKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~---~~I~A~~Yg~d~elAAs~V~lSTLLSL 576 (588)
+=-++.=...+.++++||++++... +-+|-.++ +.-.+++.|+-++.++..|+++=++.-
T Consensus 99 vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Ga 161 (230)
T COG1346 99 VGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGA 161 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 8888888888889999999998644 33444333 335689999999999999999888763
No 18
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.89 E-value=0.25 Score=51.47 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhH---HHHHHHHhcC--CCCCccHHHHHHHHHHHHHHHHHHHH
Q 007826 14 VVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVP---LLSFHFISTN--DPYSMNFKFILADTVQKIIVLLLLAI 88 (588)
Q Consensus 14 vlPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALP---ALLF~alA~~--dl~~v~~~lllay~lg~livfll~~l 88 (588)
+.-+++=+.+|.+.+|+ . ++..+.+.+ .-+++.- ++++..++.. .+.+..+..+++..+-.++.|.++++
T Consensus 140 ~~~v~vPl~lG~~~r~~---~-p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~ 214 (286)
T TIGR00841 140 LVAVLIPVSIGMLVKHK---L-PQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYL 214 (286)
T ss_pred HHHHHHHHHHHHHHHHH---h-HHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444446778888774 2 333333333 1222221 2222222221 12122455555555556667787888
Q ss_pred HHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 007826 89 WSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFL 151 (588)
Q Consensus 89 lar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvL 151 (588)
++|.++.++.| +-..++ +..-|++ +|++++...|+++.+.+.+.+.+++++.-..++...
T Consensus 215 ~a~~~~l~~~~--~~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 215 LAKLAGLPWAR--CRTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHhCCCHhh--heeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877665444 333467 8999999 999999999997777777777778877666665543
No 19
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.27 E-value=0.85 Score=48.45 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=84.1
Q ss_pred HHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHH
Q 007826 439 LIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGP 518 (588)
Q Consensus 439 ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~P 518 (588)
..-+++++|+++|+++.-+ -+..|+....-++...+....++...+|..+...+.. ...+..+.. ..+=.++.=
T Consensus 24 ~~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~-~~G~~~~~~-~~~~v~~~~ 97 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDIL-ALGWKGLLI-IIIVVILTF 97 (305)
T ss_pred cCccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHH-HhCccHHHH-HHHHHHHHH
Confidence 3457889999999999842 2468899999999999999999999999999887522 223333332 333333333
Q ss_pred HHHHHHH-HHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 007826 519 AVMAAAS-MAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVA 575 (588)
Q Consensus 519 lLa~ll~-~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLS 575 (588)
.+.+.+. +++++|......+-.-.+.--+......+..-+.++|..+.++...+++.
T Consensus 98 ~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg 155 (305)
T PF03601_consen 98 LLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFG 155 (305)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHH
Confidence 4455556 88999977654443333333344444445555666666655555555544
No 20
>COG3329 Predicted permease [General function prediction only]
Probab=94.12 E-value=8.7 Score=41.35 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 007826 430 LILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQ 495 (588)
Q Consensus 430 ~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~ 495 (588)
...|++++..+.||-+...+.|+++.++ .|-+--+.+..+.+-+=+-..-+-|+.+|+.-.++
T Consensus 205 v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 205 VKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred hhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678899999999999999999999887 23333345666777777788888888899875543
No 21
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=92.44 E-value=0.51 Score=51.08 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhhccccChhHh---hHHHHHHHHHHhHHHHH-HHHhcCCCCCc----cHHHHHHHHHHHHHHHHHHH
Q 007826 16 PLYVAMILAYGSVKWWKIFTPDQC---SGINRFVALFAVPLLSF-HFISTNDPYSM----NFKFILADTVQKIIVLLLLA 87 (588)
Q Consensus 16 PIFlLIalGyla~R~~gi~s~e~~---~~LnrfVf~~ALPALLF-~alA~~dl~~v----~~~lllay~lg~livfll~~ 87 (588)
+...+|.+|.++... |+++++-. +..++|+.+..++++++ ..++.+|++++ +++++.....+.+...+..+
T Consensus 206 ~~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~ 284 (347)
T TIGR00783 206 AYAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGA 284 (347)
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHH
Confidence 356778889999995 99997664 45666777777777776 67888899876 58899888888888888778
Q ss_pred HHHHHhcCCCCchhhhhhh-h--hcCCccccch
Q 007826 88 IWSKLSSSGSLEWSITLFS-L--STLPNTLVMG 117 (588)
Q Consensus 88 llar~~~~~~~~~~aaV~a-L--asfsNt~fLG 117 (588)
++.|+++..+-| +++-+ + +...-++.++
T Consensus 285 lvGKllG~YPiE--~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 285 FLGKLMGMYPVE--SAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHHhCCChHH--HHHHHhhhccCCCCCCcee
Confidence 889999877778 56654 3 4555555554
No 22
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.94 E-value=5.6 Score=45.85 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=87.1
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007826 441 RNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAV 520 (588)
Q Consensus 441 kNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlL 520 (588)
.++.+-|+++|+++.-. +.-..+...++.+.+...|+-.+.+|+.+.... ....+..++..++..+++-++.
T Consensus 237 ls~~LGAFlaGl~l~~s------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~~ 308 (601)
T PRK03659 237 LSMALGTFIAGVLLAES------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGLV 308 (601)
T ss_pred ccHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 67888888888888743 334566777777888999999999999998753 2234445555566667777788
Q ss_pred HHHHHHHhCCChhHHH-H-HHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 007826 521 MAAASMAVGLRGSLLH-V-AIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 521 a~ll~~lLgL~~~~~~-v-lVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL 576 (588)
+++.+..++++..... . +.+...-..+...+-+|.+++.=.+...+.++..+++|+
T Consensus 309 ~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~ 366 (601)
T PRK03659 309 LYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSM 366 (601)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 8888888888764432 2 233333455555666677888755555666667777775
No 23
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.04 E-value=7.6 Score=45.01 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=82.6
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007826 441 RNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAV 520 (588)
Q Consensus 441 kNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlL 520 (588)
.++.+=|+++|+++.-. +.-..+.+-++.+.+...|+-.+.+|+++.... . ...+..++..++..+++-++.
T Consensus 240 ls~~lGAFlAGl~l~~~------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~-l-~~~~~~il~~~~~~~~~K~~~ 311 (621)
T PRK03562 240 LSMALGAFLAGVLLASS------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT-L-LENPLRILILLLGFLAIKIAM 311 (621)
T ss_pred ccHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777643 333567777777788899999999999998753 1 223344445555677777788
Q ss_pred HHHHHHHhCCChhHHH--HHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 007826 521 MAAASMAVGLRGSLLH--VAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 521 a~ll~~lLgL~~~~~~--vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL 576 (588)
+++.+++++.+..... .+.+...-..+...+-++.+++.=.+...+.+.+.+++|+
T Consensus 312 ~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~ 369 (621)
T PRK03562 312 LWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSM 369 (621)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 8888888888644322 2223334455566666677777644445555556667775
No 24
>COG2855 Predicted membrane protein [Function unknown]
Probab=90.18 E-value=2.5 Score=45.68 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q 007826 443 PNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMA 522 (588)
Q Consensus 443 P~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ 522 (588)
++++|+++|+++..+ .+.|+-...-++.-.+.-..++...+|.+|....... .. ...+.....-+...-++++
T Consensus 39 al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-~G-~~~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-VG-GSGVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-cC-ccHHHHHHHHHHHHHHHHH
Confidence 899999999999954 3567778888899999999999999999998865221 11 2223333344444445666
Q ss_pred HHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 007826 523 AASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVA 575 (588)
Q Consensus 523 ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLS 575 (588)
.+..++++|.......-.-++.--+......+-.-+.+++..+.+|..-++++
T Consensus 112 ~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfg 164 (334)
T COG2855 112 FLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFG 164 (334)
T ss_pred HHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHH
Confidence 77788999976543222222222233333444446677777776666666655
No 25
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.61 E-value=12 Score=39.88 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccChh--HhhHHHHHHHHHHhHHHHHHHHhcC---C-CCCccHHHHHHHHHHHHHH-
Q 007826 10 VLTAVVPLYVAMILAYGSVKWWKIFTPD--QCSGINRFVALFAVPLLSFHFISTN---D-PYSMNFKFILADTVQKIIV- 82 (588)
Q Consensus 10 ILsivlPIFlLIalGyla~R~~gi~s~e--~~~~LnrfVf~~ALPALLF~alA~~---d-l~~v~~~lllay~lg~liv- 82 (588)
++.+++| +.+|.+++|+ +.+. ..+..-+.+-..++-.+.+.++++. + +.++++.-++......+..
T Consensus 164 ~~~vllP----~~~Gq~~r~~---~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (313)
T PF13593_consen 164 VLTVLLP----LVLGQLLRRW---VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLL 236 (313)
T ss_pred HHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHH
Confidence 4445555 4566666664 2221 1234455556677777777777665 2 2234443222222222222
Q ss_pred ---HHHHHHHHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhccc--chhHHHHHHHHHHH
Q 007826 83 ---LLLLAIWSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDY--SGSLMVQIVVLQCI 142 (588)
Q Consensus 83 ---fll~~llar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~--a~~~valiv~v~~l 142 (588)
+.+.++.+|.++.+++| .+..+ |+--.+.-+|+|++..+|++. ......++++.|..
T Consensus 237 ~~~l~~~~~~~r~~~~~~~d---~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~ 299 (313)
T PF13593_consen 237 LVVLVLGWLAARLLGFSRPD---RIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPL 299 (313)
T ss_pred HHHHHHHHHHHhhcCCChhh---EEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHH
Confidence 23335567766655555 33334 666788889999999999874 23344555555554
No 26
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=88.03 E-value=7.3 Score=41.82 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCcHHHH------HHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHH
Q 007826 444 NTYSSLIGLTWSLVSFRWHVEMPAIIA------RSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVG 517 (588)
Q Consensus 444 ~IIAiILGLilsllg~~~gi~LP~~L~------~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~ 517 (588)
+++=.++|.+++-+ .|+.++ +.+-.=...-..+-+|+.|.++..+. .....|+-....+.|+++.
T Consensus 15 mvVPLllgalinTf-------~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~ 85 (314)
T PF03812_consen 15 MVVPLLLGALINTF-------FPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIG 85 (314)
T ss_pred eHHHHHHHHHHHhc-------CCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHH
Confidence 45566677777766 343322 22212233445567899999999864 2335677778889999999
Q ss_pred HHHHHHHHHHhCCChh------HHHHHHHHhccch--hhhHHHHHHHcCCChhHHHHH
Q 007826 518 PAVMAAASMAVGLRGS------LLHVAIVQAALPQ--GIVPFVFAKEYNVHPDILSTA 567 (588)
Q Consensus 518 PlLa~ll~~lLgL~~~------~~~vlVLlAAmPt--Av~~~I~A~~Yg~d~elAAs~ 567 (588)
-++.+++.+++|.++. -...+.+.+|+-- +..-.-++.+||-+.|.+|..
T Consensus 86 ~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~~ 143 (314)
T PF03812_consen 86 ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAFS 143 (314)
T ss_pred HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHHH
Confidence 9999999999998863 3445555666644 333445678899887766543
No 27
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.31 E-value=19 Score=41.81 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=70.1
Q ss_pred HHHHHHHHHhchhHHHHHH-HHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007826 432 LIMVWRKLIRNPNTYSSLI-GLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAM 510 (588)
Q Consensus 432 lk~vlk~ilkNP~IIAiIL-GLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~s 510 (588)
...+.|+ ++.|.+++.++ |+++.-.++ ++- +. .+.+..++...+.+-||.+|+.+...+. +...+.++...
T Consensus 20 ~~~l~~r-l~lp~vlgyilaGillGP~~l--g~i-~~--~~~i~~laelGvv~LlF~iGLEl~~~~l--~~~~~~~~~~g 91 (621)
T PRK03562 20 IVPIAVR-LGLGSVLGYLIAGCIIGPWGL--RLV-TD--VESILHFAEFGVVLMLFVIGLELDPQRL--WKLRRSIFGGG 91 (621)
T ss_pred HHHHHHH-hCCChHHHHHHHHHHhCcccc--cCC-CC--HHHHHHHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHH
Confidence 3344554 68898888865 655543211 321 21 2346789999999999999999987642 23445555555
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHH-HHHHhccchhhhHHHHHHHc
Q 007826 511 GVRFLVGPAVMAAASMAVGLRGSLLHV-AIVQAALPQGIVPFVFAKEY 557 (588)
Q Consensus 511 llKLIV~PlLa~ll~~lLgL~~~~~~v-lVLlAAmPtAv~~~I~A~~Y 557 (588)
..-+++.-++.+.+++++|.+.....+ ...++...++...-++.++-
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~ 139 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERN 139 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566555545555666778876543222 22333344555555555543
No 28
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=87.07 E-value=6.4 Score=42.56 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=57.2
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007826 441 RNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAV 520 (588)
Q Consensus 441 kNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlL 520 (588)
-+++++|+++|+++.-+ ...+.|+.....++...+...=++...+|..+...+.. ...++-+ .....=++..=++
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~-~~G~~~l-~~~~~~v~~~~~~ 105 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIA-DVGPNEI-VADTLILTSTFFL 105 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHH-HhhHHHH-HHHHHHHHHHHHH
Confidence 57788999999998753 11246777778888899999999999999999886522 1122222 2222222222223
Q ss_pred HHHHH-HHhCCChhHH
Q 007826 521 MAAAS-MAVGLRGSLL 535 (588)
Q Consensus 521 a~ll~-~lLgL~~~~~ 535 (588)
.+.+. +++++|+...
T Consensus 106 ~~~~g~k~l~l~~~~~ 121 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMS 121 (335)
T ss_pred HHHHHHHHhCCChhHH
Confidence 33444 6789987654
No 29
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=86.63 E-value=6 Score=42.55 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 007826 445 TYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAA 524 (588)
Q Consensus 445 IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll 524 (588)
++-.+.|+++.++++ -++|..-+-..-+ .-.-+++++.++.+... ......+...++-++.+-++.++.
T Consensus 251 v~vsi~gLi~aLtPf---~~lpgs~elgtv~---lY~~v~vias~Ad~~~i-----~taP~~i~~gf~il~~h~~v~f~~ 319 (384)
T COG5505 251 VLVSITGLIIALTPF---ERLPGSQELGTVL---LYLFVVVIASPADLRLI-----VTAPLIILFGFIILISHLAVSFAA 319 (384)
T ss_pred hHHHHHHHHHHhCcc---ccCCchhhhhHHH---HHHHHHHhccchhHHHH-----HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888832 1466532211111 12334556666555432 123344556677778888889999
Q ss_pred HHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 007826 525 SMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVA 575 (588)
Q Consensus 525 ~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLS 575 (588)
..+|.+|-....++.+. -.--.+.+.++|..|| +++++-.+...|+-.
T Consensus 320 ~KlF~~dL~~i~~AslA-niGG~~sAp~~A~A~n--r~lv~~gvlmg~lG~ 367 (384)
T COG5505 320 GKLFRVDLEEILLASLA-NIGGPTSAPAMAIAKN--RELVAPGVLMGTLGY 367 (384)
T ss_pred HHHHHhHHHHHHHHHHh-ccCCccchhHHHhhcC--chhcchHHHHHHHHH
Confidence 99999987776665553 3333456678899998 688998888888754
No 30
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.50 E-value=22 Score=40.40 Aligned_cols=128 Identities=11% Similarity=0.013 Sum_probs=80.3
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007826 441 RNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAV 520 (588)
Q Consensus 441 kNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlL 520 (588)
.++.+-|+++|++++-. +....+.+....+.+...|+-.+.+|+++..... ...+..++..+++.++.-++.
T Consensus 248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l--~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMIL--IQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889887643 2333444434445677899999999999887531 112233344555566666666
Q ss_pred HHHHHHHhCCChhH--HHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 007826 521 MAAASMAVGLRGSL--LHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 521 a~ll~~lLgL~~~~--~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL 576 (588)
.+..+..++.+... ...+.+..--..+...+.++.++|.=.+..-..+.+.+++|.
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~ 377 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSI 377 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 77777777765432 222222223556667777777888755666667777777775
No 31
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=82.55 E-value=8.8 Score=41.23 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 007826 444 NTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAA 523 (588)
Q Consensus 444 ~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~l 523 (588)
.++++++|+++.-+ .-.+|+.+...... .+|+.-|.+|..+..... ....+.-+....++= ++.=.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~I-~~~G~~GIlL~v~vv-~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSML-LQAGLAGILLGVLVT-IVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHHH-HHhChHHHHHHHHHH-HHHHHHHHH
Confidence 67888888887655 33466777666665 889999999999998752 223344433333332 333344555
Q ss_pred HHHHhCCChhH
Q 007826 524 ASMAVGLRGSL 534 (588)
Q Consensus 524 l~~lLgL~~~~ 534 (588)
+.++++.++..
T Consensus 239 i~rllg~~~~~ 249 (312)
T PRK12460 239 ADRLVGGTGIA 249 (312)
T ss_pred HHHHhCCChhH
Confidence 55778888765
No 32
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=81.44 E-value=1.6 Score=47.83 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH-hccchhhhHHHHHHH
Q 007826 479 AGLGMAMFSLGLFMALQPRII-ACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQ-AALPQGIVPFVFAKE 556 (588)
Q Consensus 479 aa~PLALf~IG~sLa~~~~~~-~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLl-AAmPtAv~~~I~A~~ 556 (588)
...-.-++++|+.+....... ...........+.+++++|+..+.+...+.++......+++. +..|.+..+++.+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~ 196 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKR 196 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeec
Confidence 334456788888877653111 112234455666699999999999888888888874444444 455666666776666
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007826 557 YNVHPDILSTAVIFGMLVALPITLVYYILL 586 (588)
Q Consensus 557 Yg~d~elAAs~V~lSTLLSLpi~i~l~lLL 586 (588)
-+.|..++.....++|+.++.++..+.+++
T Consensus 197 ~~g~v~lsilmT~~stv~avi~~pl~s~~l 226 (371)
T KOG2718|consen 197 LPGDVTLSILMTTISTVLAVILTPLLSILL 226 (371)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688888888888888888876555555554
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=79.63 E-value=7.8 Score=41.62 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHhccchhhhHHHH---H
Q 007826 479 AGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSL-LHVAIVQAALPQGIVPFVF---A 554 (588)
Q Consensus 479 aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~-~~vlVLlAAmPtAv~~~I~---A 554 (588)
.-..+-+++.|.++..+.. ....++-....+.|+++.-++.+.+..++|.++.. ...+.+.+||= ..|.-+| +
T Consensus 49 ~il~~~~~~~Ga~I~~k~~--~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~-~~Ng~ly~al~ 125 (312)
T PRK12460 49 PLLGAFLLCMGAQISLKAA--PQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMS-NSNGGLYAALM 125 (312)
T ss_pred HHHHHHHHHhcCeeecccc--chhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHh-cCcHHHHHHHH
Confidence 3445668999999988641 23456667788899999998999999999887653 33344444443 3444444 8
Q ss_pred HHcCCChhHHHHH
Q 007826 555 KEYNVHPDILSTA 567 (588)
Q Consensus 555 ~~Yg~d~elAAs~ 567 (588)
.+||-+.|..+..
T Consensus 126 ~~yG~~~d~gA~~ 138 (312)
T PRK12460 126 GEFGDERDVGAIS 138 (312)
T ss_pred HHcCCHhhhhHHh
Confidence 8999887766543
No 34
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=79.23 E-value=78 Score=32.25 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=57.6
Q ss_pred HHHHHHHHHhchhHHHHH-HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007826 432 LIMVWRKLIRNPNTYSSL-IGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAM 510 (588)
Q Consensus 432 lk~vlk~ilkNP~IIAiI-LGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~s 510 (588)
...+.|+ ++.|.+.+.+ +|+++.-.++ ++--+. +.++.++.....+-||..|..+..+. .++..+......
T Consensus 7 ~~~l~~~-l~lP~~v~~il~GillGp~~l--g~i~~~---~~~~~l~~igl~~llF~~Gl~~d~~~--l~~~~~~~~~~~ 78 (273)
T TIGR00932 7 AVPLSRR-LGIPSVLGYLLAGVLIGPSGL--GLISNV---EGVNHLAEFGVILLMFLIGLELDLER--LWKLRKAAFGVG 78 (273)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHhCcccc--cCCCCh---HHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHH
Confidence 3455665 5777766665 5777653311 321122 46888999999999999999988753 234566666666
Q ss_pred HHHHHHHH-HH-HHHHHHHhCCChh
Q 007826 511 GVRFLVGP-AV-MAAASMAVGLRGS 533 (588)
Q Consensus 511 llKLIV~P-lL-a~ll~~lLgL~~~ 533 (588)
..-.+ .| .+ .+.+.++++.+..
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (273)
T TIGR00932 79 VLQVL-VPGVLLGLLLGHLLGLALG 102 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCHH
Confidence 66654 45 33 2334566776543
No 35
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.67 E-value=69 Score=36.49 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=54.5
Q ss_pred HHHHHHHHhchhHHHHH-HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHH
Q 007826 433 IMVWRKLIRNPNTYSSL-IGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMG 511 (588)
Q Consensus 433 k~vlk~ilkNP~IIAiI-LGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sl 511 (588)
..+.|+ ++.|.+++.+ +|+++.-.+ +++ ++. .+.++.++....-+-||.+|+.+..... +...+..+....
T Consensus 22 ~~l~~r-l~~P~ivg~IlaGillGp~~--lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~l--~~~~~~~~~~~~ 93 (558)
T PRK10669 22 GMLANR-LRISPLVGYLLAGVLAGPFT--PGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKDL--MAVKSIAIPGAI 93 (558)
T ss_pred HHHHHH-cCCCHHHHHHHHHHhhCccc--ccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHHH--HHHhhHHHHHHH
Confidence 344544 6889888876 455554321 132 111 2457789999999999999999887542 222233333444
Q ss_pred HHHHHHHHHHHHHHHHhCCCh
Q 007826 512 VRFLVGPAVMAAASMAVGLRG 532 (588)
Q Consensus 512 lKLIV~PlLa~ll~~lLgL~~ 532 (588)
..+++.-++.+++.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ 114 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSL 114 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 554444444555556677654
No 36
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.40 E-value=92 Score=36.11 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=66.0
Q ss_pred HHHHHHhchhHHHHHH-HHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHH
Q 007826 435 VWRKLIRNPNTYSSLI-GLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVR 513 (588)
Q Consensus 435 vlk~ilkNP~IIAiIL-GLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllK 513 (588)
+.++ ++-|.+++.++ |+++.-.+ .++ ++. .+.+..++.....+-||.+|+.+...+. +...+.++.....-
T Consensus 23 l~~r-l~~p~ilg~ilaGillGP~~--lg~-i~~--~~~i~~laelGvv~LLF~iGLel~~~~l--~~~~~~~~~~g~~~ 94 (601)
T PRK03659 23 LAQR-LGIGAVLGYLLAGIAIGPWG--LGF-ISD--VDEILHFSELGVVFLMFIIGLELNPSKL--WQLRRSIFGVGAAQ 94 (601)
T ss_pred HHHH-hCCChHHHHHHHHHHhcccc--ccC-CCc--HHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHH
Confidence 4444 68888888765 55554321 132 121 1346688999999999999999887642 23344555555555
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHH-HHHHhccchhhhHHHHHHHc
Q 007826 514 FLVGPAVMAAASMAVGLRGSLLHV-AIVQAALPQGIVPFVFAKEY 557 (588)
Q Consensus 514 LIV~PlLa~ll~~lLgL~~~~~~v-lVLlAAmPtAv~~~I~A~~Y 557 (588)
+++.-++..++.+++|++.....+ .+..+...++...-++.++-
T Consensus 95 v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 95 VLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 544433444555567777533222 22233455566556665543
No 37
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=77.56 E-value=5.8 Score=42.51 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----h-HHHHHHHHhccchhhhHHHH
Q 007826 480 GLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRG-----S-LLHVAIVQAALPQGIVPFVF 553 (588)
Q Consensus 480 a~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~-----~-~~~vlVLlAAmPtAv~~~I~ 553 (588)
-..+-++|.|.++..+.. ....++-....+.|+++.-++.+.+..++|.++ . -...+.+.+||= -.|.-+|
T Consensus 50 il~~~l~~~Ga~I~~k~~--g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~-nsNggLY 126 (314)
T TIGR00793 50 ILAVWFFCMGASIDLSAT--GTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMD-MTNGGLY 126 (314)
T ss_pred HHHHHHHHhCCeeeeccc--chhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHh-CCcHHHH
Confidence 344568899999988641 234556667778899999989999999999876 2 233444455543 3344444
Q ss_pred ---HHHcCCChhHHHHH
Q 007826 554 ---AKEYNVHPDILSTA 567 (588)
Q Consensus 554 ---A~~Yg~d~elAAs~ 567 (588)
+.+||-+.|..+..
T Consensus 127 ~aL~~qyGd~~D~gA~~ 143 (314)
T TIGR00793 127 ASIMQQYGTKEEAGAFV 143 (314)
T ss_pred HHHHHHcCCHhhhhhhh
Confidence 88999987766544
No 38
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=76.97 E-value=1e+02 Score=37.42 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=55.7
Q ss_pred HHHH-HHHhchhHHHHHHHHHHHHhhhcCCCCCcHHH-----HHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHH
Q 007826 434 MVWR-KLIRNPNTYSSLIGLTWSLVSFRWHVEMPAII-----ARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIAT 507 (588)
Q Consensus 434 ~vlk-~ilkNP~IIAiILGLilsllg~~~gi~LP~~L-----~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl 507 (588)
..+| ++--.-+++.+++|+++... +..+..+. ......+...+..+.||..|..|.... .+..|+.++
T Consensus 30 ~~lkeRl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~--Lrr~wrsV~ 103 (810)
T TIGR00844 30 LFVKEKLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY--MLKHWVSVT 103 (810)
T ss_pred HHHHhhcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHhHHHHH
Confidence 3344 34346678889999998766 33333322 222233888899999999999998753 345566666
Q ss_pred HHHHHHHHHHHHHHHHHHH-H-hCCCh
Q 007826 508 FAMGVRFLVGPAVMAAASM-A-VGLRG 532 (588)
Q Consensus 508 ~~sllKLIV~PlLa~ll~~-l-LgL~~ 532 (588)
..++.=+.+.=+++.++++ + ++++.
T Consensus 104 rLl~~~M~lT~livAL~a~~Li~GL~~ 130 (810)
T TIGR00844 104 MLLVPVMTSGWLVIALFVWILVPGLNF 130 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5555444444444444443 3 36663
No 39
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=74.70 E-value=81 Score=30.11 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=65.8
Q ss_pred HHHhch--hHH-HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHH
Q 007826 438 KLIRNP--NTY-SSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRII-ACGNTIATFAMGVR 513 (588)
Q Consensus 438 ~ilkNP--~II-AiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~-~~~~k~vl~~sllK 513 (588)
+.++-| .++ +++++.+++..+. ...++|..+.+..+.+-+. .+|..+....... ++.+...+..++.=
T Consensus 15 ~~l~~Pa~~llG~mi~~~~~~~~~~-~~~~~P~~~~~~~qviiG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~~ 86 (156)
T TIGR03082 15 SLLGLPAAWLLGPLLAGAVLSLAGG-LEITLPPWLLALAQVVIGI-------LIGSRFTREVLAELKRLWPAALLSTVLL 86 (156)
T ss_pred HHHCCCcHHHHHHHHHHHHHHhcCC-ccCCCCHHHHHHHHHHHHH-------HHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345655 344 4445556666521 1456888776665544332 3455555432111 11222233333334
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhH-HHHHHHcCCChhHHHHHHH
Q 007826 514 FLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTAVI 569 (588)
Q Consensus 514 LIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~-~I~A~~Yg~d~elAAs~V~ 569 (588)
+++.=...+.+.++.++|... .+++.+|-+... .++|+++|.|+..++..=.
T Consensus 87 l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~ 139 (156)
T TIGR03082 87 LALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQT 139 (156)
T ss_pred HHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444455555667777654 467899986544 5689999999887765443
No 40
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=74.46 E-value=1.1e+02 Score=37.07 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=52.0
Q ss_pred HHhchhHHHHH-HHHHHHHhhhcCCCC-------CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007826 439 LIRNPNTYSSL-IGLTWSLVSFRWHVE-------MPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAM 510 (588)
Q Consensus 439 ilkNP~IIAiI-LGLilsllg~~~gi~-------LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~s 510 (588)
-++.|.+++-+ +|+++.-.++ |.- +|..-...++.++....-+-||.+|+.+.... .++..+..+...
T Consensus 64 rl~~P~ivgeIlaGIlLGPs~l--g~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~--lr~~~k~a~~ia 139 (832)
T PLN03159 64 PFRQPRVISEILGGVILGPSVL--GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV--IRRTGKKALAIA 139 (832)
T ss_pred hcCCChhHHHHHHHHhcCHhhh--CcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHhcchHHHHHH
Confidence 46889888866 4555543211 221 23333357899999999999999999998754 234455555555
Q ss_pred HHHHHHHHHH-HHHHHHHh
Q 007826 511 GVRFLVGPAV-MAAASMAV 528 (588)
Q Consensus 511 llKLIV~PlL-a~ll~~lL 528 (588)
+.-+ +.|++ .+++.+.+
T Consensus 140 ~~~~-ilpf~lg~~~~~~l 157 (832)
T PLN03159 140 IAGM-ALPFCIGLAFSFIF 157 (832)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 5554 44543 33444433
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=74.41 E-value=84 Score=34.57 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=73.3
Q ss_pred HHHHhchhHHHHHHH-HHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHH
Q 007826 437 RKLIRNPNTYSSLIG-LTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFL 515 (588)
Q Consensus 437 k~ilkNP~IIAiILG-Lilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLI 515 (588)
.+-++-|.+++.+++ +++.-. +.-.+..-.+.++.++....-+-||.+|+..+..+. ++..+.+......-.+
T Consensus 25 ~~rl~lp~vlg~llaGiilGp~----~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l--~~~~~~~~~~~~~~~~ 98 (397)
T COG0475 25 FKRLGLPPVLGYLLAGIILGPW----GLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERL--KKVGRSVGLGVAQVGL 98 (397)
T ss_pred HHHcCCchHHHHHHHHHhcCcc----cccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHH--HHhchhhhhhHHHHHH
Confidence 344788999988754 444322 333445566788889999999999999999888652 2233332334444445
Q ss_pred HHHHHHHH-HHH-HhCCChhHHHHHHHHhccch-hhhHHHHHHHcCCChhHHHHHHHHHHH
Q 007826 516 VGPAVMAA-ASM-AVGLRGSLLHVAIVQAALPQ-GIVPFVFAKEYNVHPDILSTAVIFGML 573 (588)
Q Consensus 516 V~PlLa~l-l~~-lLgL~~~~~~vlVLlAAmPt-Av~~~I~A~~Yg~d~elAAs~V~lSTL 573 (588)
..|.+... ... .++++....-.+-..-++.. +...-++ +++|...+...+.++-..+
T Consensus 99 ~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL-~e~~~~~~~~g~~~l~~~i 158 (397)
T COG0475 99 TAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKIL-MELGLLKTREGQLILGALV 158 (397)
T ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHH-HHhccccchHHHHHHHHHH
Confidence 55633332 222 47777665444333333333 4444444 4455444444444444333
No 42
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=73.24 E-value=29 Score=37.49 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccChhHhhHHHHH---HHHHHhHHHHHHHHhcCCCCCc-cHHHH--HHHHHHHHHHH
Q 007826 10 VLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRF---VALFAVPLLSFHFISTNDPYSM-NFKFI--LADTVQKIIVL 83 (588)
Q Consensus 10 ILsivlPIFlLIalGyla~R~~gi~s~e~~~~Lnrf---Vf~~ALPALLF~alA~~dl~~v-~~~ll--lay~lg~livf 83 (588)
+++.++| +.+|-+++++ ++ +..+.+-+. +=..++=+.++...+.. .++. ...+. ++..+=-++.|
T Consensus 167 ~~~vllP----~~LG~~~r~~---~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~-~~~~~~~~~~v~~~v~~~n~lg~ 237 (319)
T COG0385 167 LLQVLLP----FVLGQLLRPL---LP-KWVERLKKALPPVSVLSILLIVYAAFSAA-VENGIWSGLLIFVAVILHNLLGL 237 (319)
T ss_pred HHHHHHH----HHHHHHHHHH---HH-HHHHHHhhhcchhhHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHH
Confidence 3344555 4556666653 22 233332222 33344444555555543 3344 33332 22222233457
Q ss_pred HHHHHHHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhc-ccchhHHHHHHHHHHHH
Q 007826 84 LLLAIWSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYG-DYSGSLMVQIVVLQCII 143 (588)
Q Consensus 84 ll~~llar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG-~~a~~~valiv~v~~lI 143 (588)
.+.++.+|+++.++.| .--.++ .+.-|. -+|.|++..-++ +..+.|.++...+|++.
T Consensus 238 ~~gy~~ar~~g~~~a~--~iti~ie~g~qn~-~lg~alA~~f~~~~~~alP~aif~~~q~~~ 296 (319)
T COG0385 238 LLGYFGARLLGFDKAD--EITIAIEGGMQNL-GLGAALAAAFFGNPLMALPLAIFSVWQNMS 296 (319)
T ss_pred HHHHHHHHHhCCChhh--eeeEEEeeccccH-HHHHHHHHhcCCCchhHhHHHHHHHHHHHH
Confidence 7778889988775555 233444 455554 479999999445 45555666666666653
No 43
>PRK05326 potassium/proton antiporter; Reviewed
Probab=72.25 E-value=83 Score=35.96 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=56.2
Q ss_pred HHHHHHHHhchhHHHHH-HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHH
Q 007826 433 IMVWRKLIRNPNTYSSL-IGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMG 511 (588)
Q Consensus 433 k~vlk~ilkNP~IIAiI-LGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sl 511 (588)
..+.++ ++-|.+++.+ +|+++.-.++. .++... .+..+.++..+.++.||..|..+.... .+..++.++....
T Consensus 22 ~~l~~r-~~~P~ll~~il~GillGp~~lg-~i~~~~--~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~la~ 95 (562)
T PRK05326 22 SRLSSR-LGIPSLLLFLAIGMLAGEDGLG-GIQFDN--YPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALSLAT 95 (562)
T ss_pred HHHHHH-cCCcHHHHHHHHHHHhCccccC-CcccCc--HHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHHHHH
Confidence 344444 5778777665 67666544211 122222 256788999999999999999888754 2345566555555
Q ss_pred HHHHHHHHHH--HHHHHHhCCChh
Q 007826 512 VRFLVGPAVM--AAASMAVGLRGS 533 (588)
Q Consensus 512 lKLIV~PlLa--~ll~~lLgL~~~ 533 (588)
.-.+ .|.+. +...++++++..
T Consensus 96 ~gv~-~t~~~~g~~~~~l~g~~~~ 118 (562)
T PRK05326 96 LGVL-ITAGLTGLFAHWLLGLDWL 118 (562)
T ss_pred HHHH-HHHHHHHHHHHHHhcCCHH
Confidence 5443 34433 333456777643
No 44
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=70.79 E-value=22 Score=39.68 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=62.7
Q ss_pred HhhhccccChh---HhhHHHHHHHHHHhHHHHHH-HHhcCCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007826 27 SVKWWKIFTPD---QCSGINRFVALFAVPLLSFH-FISTNDPYSM----NFKFILADTVQKIIVLLLLAIWSKLSSSGSL 98 (588)
Q Consensus 27 a~R~~gi~s~e---~~~~LnrfVf~~ALPALLF~-alA~~dl~~v----~~~lllay~lg~livfll~~llar~~~~~~~ 98 (588)
..|..++++++ .++.+++|+.+--.|++++- .++-+|++++ ++.+++......+.+.+..+++.|+++-.+-
T Consensus 283 i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPv 362 (414)
T PF03390_consen 283 IVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPV 362 (414)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 33335889854 56778899998888888775 4555899876 7888888888777777777888998877677
Q ss_pred chhhhhhh-h--hcCCccccc
Q 007826 99 EWSITLFS-L--STLPNTLVM 116 (588)
Q Consensus 99 ~~~aaV~a-L--asfsNt~fL 116 (588)
| +++-+ + +...-++.+
T Consensus 363 E--sAItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 363 E--SAITAGLCMANMGGTGDV 381 (414)
T ss_pred H--HHHHhhhcccCCCCCCcc
Confidence 7 55554 3 444444444
No 45
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=69.56 E-value=30 Score=37.09 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 007826 509 AMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVY 582 (588)
Q Consensus 509 ~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSLpi~i~l 582 (588)
.+++=.++.-.+.+.+.++++++....+.+.++.++=-+..+..+|..+=.+.++++...+...++=+|.+..+
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~~~ 324 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIEVPVMLSL 324 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehhhhhee
Confidence 34456666677778888899999999999999999988888888888875556788888888888777766543
No 46
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=61.57 E-value=2.5e+02 Score=30.71 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCC-CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHH
Q 007826 431 ILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVE-MPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFA 509 (588)
Q Consensus 431 ~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~-LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~ 509 (588)
.++++++..++|+-++-.+.|+++.+.....+++ +-.+..+..+ -. +++|.+-|.+.--++. .++|+.-+.
T Consensus 166 ~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----G~--L~lFLLeMGl~A~~rL--~~l~~~g~~ 237 (327)
T PF05982_consen 166 SWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----GV--LCLFLLEMGLVAARRL--RDLRKVGWF 237 (327)
T ss_pred cHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----HH--HHHHHHHhhHHHHHhh--HHHHhhhHH
Confidence 4788999999999999999999998873222222 1122222222 33 4555555554433211 123333333
Q ss_pred HHHHHHHHHHH----HHHHHHHhCCChhHHHHHHHHhc
Q 007826 510 MGVRFLVGPAV----MAAASMAVGLRGSLLHVAIVQAA 543 (588)
Q Consensus 510 sllKLIV~PlL----a~ll~~lLgL~~~~~~vlVLlAA 543 (588)
.+.==+++|++ .+.+.+++|++.--...+.+++|
T Consensus 238 li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaA 275 (327)
T PF05982_consen 238 LIAFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAA 275 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHh
Confidence 33333566654 44445678887554444444443
No 47
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=55.95 E-value=1.3e+02 Score=32.89 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccChh-HhhHHHHHHHHHHhHHHHHHHHhc--CCCCCc--cHHHHHHHHHHHHH----
Q 007826 11 LTAVVPLYVAMILAYGSVKWWKIFTPD-QCSGINRFVALFAVPLLSFHFIST--NDPYSM--NFKFILADTVQKII---- 81 (588)
Q Consensus 11 LsivlPIFlLIalGyla~R~~gi~s~e-~~~~LnrfVf~~ALPALLF~alA~--~dl~~v--~~~lllay~lg~li---- 81 (588)
+-...|..+=+..=|...|+ + ..| ..+..-...=.+++++|++.-+.= ..=+++ ++.-++-.++..++
T Consensus 183 lyl~iPli~G~lTR~i~~k~-k--g~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~ 259 (342)
T COG0798 183 LYLGIPLIAGVLTRYILIKK-K--GREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLL 259 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHh-c--cchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33445655545555555553 2 221 233333344456777777654421 111223 44444334443333
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhhcCCccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 007826 82 VLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEY 154 (588)
Q Consensus 82 vfll~~llar~~~~~~~~~~aaV~aLasfsNt~fLGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvLlE~ 154 (588)
.|.+.++++|..+-+-++ ++-.++++-||..-+.++++..+||-.... ++..++..++-.|+.+.+..+
T Consensus 260 ~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~a--A~a~vigpLvEVpvml~lV~v 328 (342)
T COG0798 260 MFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGA--ALATVVGPLVEVPVMLGLVKV 328 (342)
T ss_pred HHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccc--hhhhhccchhhHHHHHHHHHH
Confidence 233344555655543334 444444778999999999999999944332 344444555556666666655
No 48
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=55.56 E-value=1e+02 Score=37.33 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCCCCCc-cH---HHHHHHHHHHHHH-HHHHHHHH
Q 007826 16 PLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSM-NF---KFILADTVQKIIV-LLLLAIWS 90 (588)
Q Consensus 16 PIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~dl~~v-~~---~lllay~lg~liv-fll~~lla 90 (588)
+++.-..+|.+... .-+..+-.+-+..++..+.+|......=.+.|+..+ +. .+++...+..++. ++.+++.+
T Consensus 295 ~ilGAFlaGl~lp~--~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a 372 (832)
T PLN03159 295 SVFGAFVFGLVIPN--GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA 372 (832)
T ss_pred HHHHHHHHhhccCC--cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555543 223455677888899999999988888888888766 32 2222222211111 33334456
Q ss_pred HHhcCCCCchhhhhhhh--hcCCccccchHHHHHH-----hhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 007826 91 KLSSSGSLEWSITLFSL--STLPNTLVMGIPLLKG-----MYGDYSGSLMVQIVVLQCIIWYTLMLFLFE 153 (588)
Q Consensus 91 r~~~~~~~~~~aaV~aL--asfsNt~fLGiPIl~~-----lyG~~a~~~valiv~v~~lIl~Pl~lvLlE 153 (588)
++.+.+.++ +...++ ++.+ .+.+-++.. +++++....+++.+++.+.+..|+...+..
T Consensus 373 ~~~g~~~~e--al~lG~lm~~kG---~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 373 FFYTMPFRE--GITLGFLMNTKG---LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred HHhCCCHHH--HHHHHHHHhccc---HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 666554445 444443 4443 344333333 345555555555566677788887765544
No 49
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=53.44 E-value=3.7e+02 Score=30.22 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhH------HHHHHHHHhhhcccchhhhhcch
Q 007826 430 LILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAG------LGMAMFSLGLFMALQPRIIACGN 503 (588)
Q Consensus 430 ~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa------~PLALf~IG~sLa~~~~~~~~~~ 503 (588)
+.+++.+++-.+.-..+..+++....+.+.-...++|+.+.+.+.-+...- .-+.++.+|+.|...
T Consensus 262 ~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~-------- 333 (425)
T PRK15060 262 STLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLT-------- 333 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHH--------
Confidence 456666666665555555544444333211113467888887776665322 222344455544432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHh------ccchhhhHHHHHHHcCCChhHHHHHHH
Q 007826 504 TIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQA------ALPQGIVPFVFAKEYNVHPDILSTAVI 569 (588)
Q Consensus 504 k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlA------AmPtAv~~~I~A~~Yg~d~elAAs~V~ 569 (588)
..=+++.|++ +-+...+|+|+.+..++++.. .=|.+.+.++.+.--+.+.+.....+.
T Consensus 334 -------a~ili~~Pil-~Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~~ 397 (425)
T PRK15060 334 -------PTVLILTPVL-MPLVKEAGIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVF 397 (425)
T ss_pred -------HHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence 1223455644 344556899999877766554 335588888888888877776655443
No 50
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=52.45 E-value=25 Score=36.34 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhcccchhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHhccchhhhHHH-HH
Q 007826 480 GLGMAMFSLGLFMALQPRI-IACGNTIATFAMGVRFLVGPAVMAAASMAV---GLRGSLLHVAIVQAALPQGIVPFV-FA 554 (588)
Q Consensus 480 a~PLALf~IG~sLa~~~~~-~~~~~k~vl~~sllKLIV~PlLa~ll~~lL---gL~~~~~~vlVLlAAmPtAv~~~I-~A 554 (588)
++.-..+.-|.+|...... ....|+.-+...+.-+.+.|...|+++.+. +.|.....-+.+.++||+-+.+.+ +.
T Consensus 59 ~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT 138 (287)
T KOG4821|consen 59 CVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILT 138 (287)
T ss_pred EEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeee
Confidence 3334455667766654311 124677778888889999999999988654 466778899999999999766544 45
Q ss_pred HHcCCChhHHHHHHHHHHHHHH
Q 007826 555 KEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 555 ~~Yg~d~elAAs~V~lSTLLSL 576 (588)
..-|+++ ++.++-|.++++
T Consensus 139 ~~aGGNa---~A~~v~S~f~g~ 157 (287)
T KOG4821|consen 139 TNAGGNA---SALCVCSVFIGN 157 (287)
T ss_pred eccCccH---HHHHHHHHHHHH
Confidence 5556553 445555555553
No 51
>PRK05326 potassium/proton antiporter; Reviewed
Probab=49.05 E-value=1.7e+02 Score=33.50 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=62.8
Q ss_pred HhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHH
Q 007826 440 IRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPA 519 (588)
Q Consensus 440 lkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~Pl 519 (588)
=-++.+-++++|+++.-. ..+--..+.+..+.++....|+..+.+|+.+.... .....+..+....++-++.-|+
T Consensus 243 g~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~-l~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 243 GGSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR-LLDIALPALLLALFLILVARPL 317 (562)
T ss_pred CCcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888887643 22222457788888888889999999999887643 1111111122222333444465
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHH
Q 007826 520 VMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAK 555 (588)
Q Consensus 520 La~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~ 555 (588)
.++.....++.+.. ...++-.+.|=+..+.++|.
T Consensus 318 ~v~l~~~~~~~~~~--e~~~i~~~g~RG~v~i~lA~ 351 (562)
T PRK05326 318 AVFLSLLPFRFNLR--EKLFISWVGLRGAVPIVLAT 351 (562)
T ss_pred HHHHHHccCCCCHh--hhheeeeecchhHHHHHHHH
Confidence 55555555555433 33344434566666666654
No 52
>PRK09528 lacY galactoside permease; Reviewed
Probab=48.49 E-value=3.4e+02 Score=28.75 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=26.7
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 007826 116 MGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDT 168 (588)
Q Consensus 116 LGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvLlE~~~~~~~~~~~~~~~ 168 (588)
+|.++.-.++..-+......+..+-.++...+....+.-+..++.+++|-||.
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRELSLLRRQVPEA 419 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHhhCccc
Confidence 45555555543323332333333333333444444555566777788888863
No 53
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=47.56 E-value=2.2e+02 Score=34.75 Aligned_cols=109 Identities=10% Similarity=-0.061 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhHHHHHHHHHhhhcccchhh----hhcchhHHHHHHHHHHH
Q 007826 442 NPNTYSSLIGLTWSLVSFRWHVEMP--AIIARSIAILSDAGLGMAMFSLGLFMALQPRI----IACGNTIATFAMGVRFL 515 (588)
Q Consensus 442 NP~IIAiILGLilsllg~~~gi~LP--~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~----~~~~~k~vl~~sllKLI 515 (588)
+-++-++++|+++... ++ .+ .....+.+.+......+..+.+|+.+...... ....|+.+++++++=++
T Consensus 265 SGfLAVFVAGl~~gn~----~~-~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 265 DDLLVSFFAGTAFAWD----GW-FAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred ccHHHHHHHHHHHhcc----cc-hhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 4555566777776643 22 11 11233445556666778899999998653210 01235556666667777
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHH
Q 007826 516 VGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAK 555 (588)
Q Consensus 516 V~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~ 555 (588)
.-|.++++++.+.+-...+...+++-..-|-++.+.+|+.
T Consensus 340 rRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl~ 379 (810)
T TIGR00844 340 RRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAAI 379 (810)
T ss_pred HHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHHH
Confidence 7877777655555544567778888888888776665543
No 54
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=46.66 E-value=4.4e+02 Score=29.05 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH-hHHHHHHHHHhhhcccch
Q 007826 439 LIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSD-AGLGMAMFSLGLFMALQP 496 (588)
Q Consensus 439 ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~-aa~PLALf~IG~sLa~~~ 496 (588)
+=-++.+=|+++|++++-+ ..+- +-+++-++.+++ ...|+=.+.+|+++....
T Consensus 241 ~gls~ilGAFlaGl~ls~~----~~~~-~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~ 294 (397)
T COG0475 241 LGLSMILGAFLAGLLLSES----EYRK-HELEEKIEPFGDGLFIPLFFISVGMSLDLGV 294 (397)
T ss_pred hChhHHHHHHHHHHHhccc----ccch-HHHHHHHHhHHhHHHHHHHHHHhhHHcCHHH
Confidence 3357788888999998876 2221 478899999999 999999999999998753
No 55
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=45.45 E-value=4.6e+02 Score=28.95 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=74.3
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCC-CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHH--HHHHHHHHHHH
Q 007826 441 RNPNTYSSLIGLTWSLVSFRWHVE-MPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIA--TFAMGVRFLVG 517 (588)
Q Consensus 441 kNP~IIAiILGLilsllg~~~gi~-LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~v--l~~sllKLIV~ 517 (588)
-.|++++++++++++-+ |+- .|. -.+.-+.+-....|++++.+=.+...++ ..+...+.. +....+=.++.
T Consensus 25 l~~~vl~~~~~~~lsnl----gli~~p~-~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLSNL----GLIDSPA-SSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred cCHHHHHHHHHHHHHHC----CCcCCCC-cchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 48899999999999988 532 232 2344466667777887776655555543 222222222 22222222232
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhccc--hhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 007826 518 PAVMAAASMAVGLRGSLLHVAIVQAALP--QGIVPFVFAKEYNVHPDILSTAVIFGMLVAL 576 (588)
Q Consensus 518 PlLa~ll~~lLgL~~~~~~vlVLlAAmP--tAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL 576 (588)
=.+++.+.... +.++.-++.-.+++.= -++|-..+++.++.+++.-+..+..-++++-
T Consensus 99 ~~va~~l~~~~-l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~ 158 (378)
T PF05684_consen 99 AVVAFLLFGGF-LGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMA 158 (378)
T ss_pred HHHHHHHHhhc-ccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 23333332221 2344444444444433 3677788899999998888888887777664
No 56
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=42.84 E-value=1.4e+02 Score=33.45 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhccccChh---HhhHHHHHHHHHHh-HHHHHHHHhcCCCCCc----cHHHHHHHHHHHHHHHHHHH
Q 007826 16 PLYVAMILAYGSVKWWKIFTPD---QCSGINRFVALFAV-PLLSFHFISTNDPYSM----NFKFILADTVQKIIVLLLLA 87 (588)
Q Consensus 16 PIFlLIalGyla~R~~gi~s~e---~~~~LnrfVf~~AL-PALLF~alA~~dl~~v----~~~lllay~lg~livfll~~ 87 (588)
|+..+|.+=.++.-. ++++++ .++.+++|.-+=-+ |.|.=..++=+|++++ +|++++....-.+.+-...+
T Consensus 292 ~va~MIil~a~lk~~-nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~ 370 (438)
T COG3493 292 PVAFMIILVAILKAA-NLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGA 370 (438)
T ss_pred hHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 554566666666663 888854 56677888765444 4444456677899877 78888877777777777678
Q ss_pred HHHHHhcCCCCchhhhhhh
Q 007826 88 IWSKLSSSGSLEWSITLFS 106 (588)
Q Consensus 88 llar~~~~~~~~~~aaV~a 106 (588)
+..|+..--+.| +++.+
T Consensus 371 f~grl~~~YPVE--aAI~a 387 (438)
T COG3493 371 FVGRLMGFYPVE--AAITA 387 (438)
T ss_pred HHHHHhcCCchH--HHHHH
Confidence 888888665777 56665
No 57
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=40.83 E-value=5.4e+02 Score=28.46 Aligned_cols=128 Identities=15% Similarity=0.107 Sum_probs=80.3
Q ss_pred HHHHHHHHHhchh---HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhh-hhcchhHHH
Q 007826 432 LIMVWRKLIRNPN---TYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRI-IACGNTIAT 507 (588)
Q Consensus 432 lk~vlk~ilkNP~---IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~-~~~~~k~vl 507 (588)
+...+-+.+|.|. +-.++++..++..+ ..++++|+++....+++-++ .+|..++..... .++.....+
T Consensus 199 ~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~~~~lP~wl~~va~~~iG~-------~IG~~f~~~~l~~~~r~~~~~~ 270 (352)
T COG3180 199 LGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GITIQLPAWLLAVAQALIGA-------LIGSRFDRSILREAKRLLPAIL 270 (352)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ceeeeCCHHHHHHHHHHHHH-------HHcccccHHHHHHhHhhcchHH
Confidence 4445556677774 44566777777763 34688999988666655443 467666654311 122334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhH-HHHHHHcCCChhHHHHHHHHH
Q 007826 508 FAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTAVIFG 571 (588)
Q Consensus 508 ~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~-~I~A~~Yg~d~elAAs~V~lS 571 (588)
...+.=+++.-.+++++.++.++|... .+++..|-+... ...|...+.|+.++.+.=.+=
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~t----a~La~sPGGl~~ma~~A~~l~ad~a~V~a~q~lR 331 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNT----AYLATSPGGLDTMAAIAAALGADPAFVMALQVLR 331 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHcCCCcHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 555556666666777777888888655 567889986654 456777888877766544433
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=40.33 E-value=18 Score=41.35 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=49.5
Q ss_pred CCccccccc-cCCCceEEEEeecCCcchhhhhcCCCCCCCCCccCCCCCCCCcc------ccccccCCCCCC
Q 007826 188 EPLQTEAEV-GEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNC------EIYSLQSSRNHT 252 (588)
Q Consensus 188 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 252 (588)
+|.++|+-| |||||+||-.-.+....+|.--.+..+|-+-|+..|.-+-|--| .+|++|+...|+
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Confidence 477788777 58999999998888878888878888888888888866555433 568887765543
No 59
>PRK03818 putative transporter; Validated
Probab=36.94 E-value=7.2e+02 Score=28.79 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhh----hhcchhHHHHHHHHHHHHHHHHHH
Q 007826 447 SSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRI----IACGNTIATFAMGVRFLVGPAVMA 522 (588)
Q Consensus 447 AiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~----~~~~~k~vl~~sllKLIV~PlLa~ 522 (588)
..+.|+++...+...++++|+...+.++.+| ++||+....+..-+.. ++..++......+ =.++..++++
T Consensus 36 ~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~g-----l~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~-~~~~~~~~~~ 109 (552)
T PRK03818 36 VLFGGIIVGHFVSQFGLTLDSDMLHFIQEFG-----LILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVL-IVILGGLVTA 109 (552)
T ss_pred HHHHHHHHhccccccCcccChHHHHHHHHHH-----HHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHH
Confidence 3455566555211127778887666665433 4455444444332211 1122333333322 2233334566
Q ss_pred HHHHHhCCChhHHHH
Q 007826 523 AASMAVGLRGSLLHV 537 (588)
Q Consensus 523 ll~~lLgL~~~~~~v 537 (588)
.+.++++++.....-
T Consensus 110 ~~~~~~~~~~~~~~G 124 (552)
T PRK03818 110 ILHKLFGIPLPVMLG 124 (552)
T ss_pred HHHHHhCCCHHHHHH
Confidence 667789998764433
No 60
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=36.58 E-value=3.4e+02 Score=29.92 Aligned_cols=98 Identities=10% Similarity=0.153 Sum_probs=63.6
Q ss_pred cccChhHhhHHHHHH-----HHHHhHHHHHHHHhcCCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhh
Q 007826 32 KIFTPDQCSGINRFV-----ALFAVPLLSFHFISTNDPYSM---NFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSIT 103 (588)
Q Consensus 32 gi~s~e~~~~LnrfV-----f~~ALPALLF~alA~~dl~~v---~~~lllay~lg~livfll~~llar~~~~~~~~~~aa 103 (588)
++++++..+..+.|. .++-.-||+--++...|.+-+ -.+|+-....+.+.+++++.+...++.....| +-
T Consensus 7 ~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~--~~ 84 (347)
T TIGR00783 7 NILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDH--SL 84 (347)
T ss_pred CCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH--hh
Confidence 889999999998854 467778899999988888755 34777777777777777777777766654444 11
Q ss_pred hh-h--h-hcCCccccchHHHHHH-hhcccchh
Q 007826 104 LF-S--L-STLPNTLVMGIPLLKG-MYGDYSGS 131 (588)
Q Consensus 104 V~-a--L-asfsNt~fLGiPIl~~-lyG~~a~~ 131 (588)
.. . + +.=.+.+.+.+..... +.|..+..
T Consensus 85 ~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~ 117 (347)
T TIGR00783 85 MYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEE 117 (347)
T ss_pred heeeehhcCCCcccchhhHHHHHHHHhCCCHHH
Confidence 11 1 1 3334455555544444 44555544
No 61
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=35.26 E-value=1e+02 Score=33.41 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 007826 446 YSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAAS 525 (588)
Q Consensus 446 IAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~ 525 (588)
+.+++|..+.-+ .-.+++......+. -.|..-+.+|..+..... ....+.-++..+ .=.++.+.+.+...
T Consensus 178 lplliG~~lgnl----~~~l~~~~~~Gi~~----lLp~~~~~lG~~l~lq~i-~~~G~~GilL~~-~~~~~t~~~~~~~~ 247 (326)
T PRK05274 178 LPLLVGFILGNL----DPELRQFLGKAVPV----LIPFFAFALGNGIDLGTI-ITAGLSGILLGV-AVVAVTGIPLYLAD 247 (326)
T ss_pred HHHHHHHHHHhH----HHhhHHHhcCCcEE----EHHHHHHHHhcceeHhHH-HhcCCcchhhhh-hHhhccchhhHhHh
Confidence 555555555543 22233444443333 778888889999888652 233333333322 23344555566666
Q ss_pred HHhCCChhHHHHHHHHhc-c--chhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 007826 526 MAVGLRGSLLHVAIVQAA-L--PQGIVPFVFAKEYNVHPDILSTAVIFGMLVA 575 (588)
Q Consensus 526 ~lLgL~~~~~~vlVLlAA-m--PtAv~~~I~A~~Yg~d~elAAs~V~lSTLLS 575 (588)
++++.++......++.+| . =++....-..-.|....+.++..|....+++
T Consensus 248 Rl~~~~~g~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt 300 (326)
T PRK05274 248 RLIGGGNGVAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVT 300 (326)
T ss_pred heeecCCCcchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHH
Confidence 778655543333333222 1 1111122222334445555555454455544
No 62
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.63 E-value=98 Score=32.32 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=67.4
Q ss_pred HHhchhHHHHHHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchh---HHHHHHHHH-
Q 007826 439 LIRNPNTYSSLIGLTWSLVSFRWHV-EMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNT---IATFAMGVR- 513 (588)
Q Consensus 439 ilkNP~IIAiILGLilsllg~~~gi-~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k---~vl~~sllK- 513 (588)
+..-|++||+++|++++.. .+ +++.++.+--.-.+.....++++.+++.+...- ..+.. .+-.+.+++
T Consensus 19 i~llPmlyA~iig~~~~~~----~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~v---Gp~i~~i~~aGpALilQE 91 (241)
T PF11299_consen 19 IVLLPMLYALIIGMALGPQ----KLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTV---GPNIPKILSAGPALILQE 91 (241)
T ss_pred eehHHHHHHHHHHHHhcch----hhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHhhHHHHHHH
Confidence 5568999999999999876 22 234556666666666666777777766655421 11111 111122221
Q ss_pred --HHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHH
Q 007826 514 --FLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILS 565 (588)
Q Consensus 514 --LIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAA 565 (588)
.+--.++++-++.++|+..+......=.+= =.+..+++++||.|..+..
T Consensus 92 ~GnlGTillaLPiAllLGlkREaIGat~SI~R---Ep~laiI~ekYGldSpEgr 142 (241)
T PF11299_consen 92 FGNLGTILLALPIALLLGLKREAIGATFSIGR---EPNLAIISEKYGLDSPEGR 142 (241)
T ss_pred hcchhhHHHHhHHHHHhcccHHhhcceeeccc---CcceeeeehhcCCCCcccc
Confidence 113345566666778887765443322222 2345578999999866543
No 63
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=34.32 E-value=4e+02 Score=30.86 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc--hhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 007826 448 SLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQ--PRIIACGNTIATFAMGVRFLVGPAVMAAAS 525 (588)
Q Consensus 448 iILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~--~~~~~~~~k~vl~~sllKLIV~PlLa~ll~ 525 (588)
.++|+++..+ ++++|+.+.+ ...-+=++++|++-... +..++..++..+.++++ .++.-++++++.
T Consensus 42 Lfvgl~~G~~----g~~i~~~v~~-------~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~ 109 (562)
T TIGR03802 42 LIVAVLIGQL----GIQIDPGVKA-------VFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALA 109 (562)
T ss_pred HHHHHHHHhc----CCCCChHHHH-------HHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4556666665 7788876442 33333444555543321 11122234544444333 344456777778
Q ss_pred HHhCCChhHHHHHH
Q 007826 526 MAVGLRGSLLHVAI 539 (588)
Q Consensus 526 ~lLgL~~~~~~vlV 539 (588)
+++++|.....-++
T Consensus 110 ~~~g~~~~~~~Gl~ 123 (562)
T TIGR03802 110 KIFGLDKGTAAGLA 123 (562)
T ss_pred HHhCCCHHHHHHHH
Confidence 89999876544433
No 64
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=33.88 E-value=1e+02 Score=32.57 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhc-------------CCCCCcHHHHHH----HHHHHHhHHHHHHHHHhhhcccchhhh---hcchh
Q 007826 445 TYSSLIGLTWSLVSFR-------------WHVEMPAIIARS----IAILSDAGLGMAMFSLGLFMALQPRII---ACGNT 504 (588)
Q Consensus 445 IIAiILGLilsllg~~-------------~gi~LP~~L~~~----L~~LG~aa~PLALf~IG~sLa~~~~~~---~~~~k 504 (588)
++.++.|+++...|.+ +-+|+|.++.+. ++.+....+-..|-..|+-........ ..+..
T Consensus 91 lv~~l~g~~l~~~G~~~~r~~~fPL~~Llf~vP~p~~l~~~lt~pLq~~~s~~a~~~L~~~Gipv~reG~~i~lp~~~l~ 170 (268)
T TIGR03113 91 QIPVIAGLLLITRGWRALRALWFPLFFLLFMIPLPGFVVDALTLPMKQAVSYVAEQILYWAGYPIARSGVILQVGQYQLL 170 (268)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcHHHHhhhHHHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCeeEE
Confidence 4555566666555432 257888776666 676666667777888888766542111 01112
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCChhHHHHHHHHhccchhhhH
Q 007826 505 IATFAMGVRFLVGPAVMAAA--SMAVGLRGSLLHVAIVQAALPQGIVP 550 (588)
Q Consensus 505 ~vl~~sllKLIV~PlLa~ll--~~lLgL~~~~~~vlVLlAAmPtAv~~ 550 (588)
-+=.++.+|.++. ++++.. ++++......++++++.++.|.+..+
T Consensus 171 Va~aCSGlr~L~~-l~~l~~l~~~l~~~~~~~r~~~l~~~avpiai~a 217 (268)
T TIGR03113 171 VADACAGLHTLFS-LEAMGLLYLNLVRHDSIARNVILAIAIIPISFTA 217 (268)
T ss_pred EeccCCcHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 2234788898654 444443 34556666678888889999997654
No 65
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=29.95 E-value=3.5e+02 Score=29.48 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=44.3
Q ss_pred chhH-HHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007826 442 NPNT-YSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAM 510 (588)
Q Consensus 442 NP~I-IAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~s 510 (588)
-|-+ +++++..+++-+ + .+|+.+.+.++.+++...-++|.++|+..+.++ .++..+|..+...
T Consensus 251 ~P~FvlgFl~~~~l~S~----~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g~ 314 (335)
T TIGR00698 251 IPWFAVLFIGVAIFNSF----D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFASY 314 (335)
T ss_pred CChHHHHHHHHHHHHHh----h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHHH
Confidence 4544 444444444544 3 478889999999999999999999999998875 3344556555443
No 66
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=29.66 E-value=8.1e+02 Score=27.15 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhh-hHHHHHHHcCCChhHHHHHH
Q 007826 502 GNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGI-VPFVFAKEYNVHPDILSTAV 568 (588)
Q Consensus 502 ~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv-~~~I~A~~Yg~d~elAAs~V 568 (588)
.|......++.=+.+.-++.|.+.+.-.+|+.. -+.+++|-+. .-..+|++||.|...+|-.=
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA~d~gAd~~~VAl~Q 149 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIAQDYGADLRLVALMQ 149 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555555555555566655544466554 3567888744 45678999999988877543
No 67
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=27.60 E-value=1.1e+03 Score=27.94 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHhCCChhHHHHHHHHh-----cc-chhhhHHHHHHHcCCChhHHHH
Q 007826 526 MAVGLRGSLLHVAIVQA-----AL-PQGIVPFVFAKEYNVHPDILST 566 (588)
Q Consensus 526 ~lLgL~~~~~~vlVLlA-----Am-PtAv~~~I~A~~Yg~d~elAAs 566 (588)
.-+|+|+......++.. .. |.+.+.++-+.--|.++.....
T Consensus 464 ~~lGidpi~~~~~v~~~~~ig~iTPPvgl~lfvaa~Ia~~~~~~~~~ 510 (613)
T TIGR02123 464 IALGVPPIAAHMFVFYFGILADITPPVALAAFAAAGIAGADPMKTGF 510 (613)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCHHHHHH
Confidence 34789987766555443 24 5588888888888888665543
No 68
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=26.58 E-value=8.2e+02 Score=26.20 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=64.6
Q ss_pred HHhch--hHHHH-HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhh-hhcchhHHHHHHHHHH
Q 007826 439 LIRNP--NTYSS-LIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRI-IACGNTIATFAMGVRF 514 (588)
Q Consensus 439 ilkNP--~IIAi-ILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~-~~~~~k~vl~~sllKL 514 (588)
.++-| .+++. +++.+++.++. ....+|+++....+.+-++ .+|..+...... .++........++.=+
T Consensus 173 ~l~iPa~~llGpml~~a~~~~~~~-~~~~~P~~l~~~aqv~iG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~~l 244 (318)
T PF05145_consen 173 RLRIPAPWLLGPMLVSAILNLFGG-PSFSLPPWLVNAAQVLIGA-------SIGSRFTRETLRELRRLLPPALLSTLLLL 244 (318)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHH-------HHHccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 44444 44455555522 2467888766555543332 345555443211 1111222333344444
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhH-HHHHHHcCCChhHHHHHHHH
Q 007826 515 LVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTAVIF 570 (588)
Q Consensus 515 IV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~-~I~A~~Yg~d~elAAs~V~l 570 (588)
.+.=++++.+.++.++|... .+++..|-+... .++|...|.|+..++..=++
T Consensus 245 ~~~~~~a~~l~~~~~~~~~t----~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~ 297 (318)
T PF05145_consen 245 ALCALFAWLLSRLTGIDFLT----ALLATAPGGLAEMALIALALGADVAFVAAHQVV 297 (318)
T ss_pred HHHHHHHHHHHHHHCCCHHH----HHHHhCCccHHHHHHHHHHcCCChHHHHHHHHH
Confidence 44445556666677777544 577889987655 45688899998877654433
No 69
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=26.50 E-value=2.1e+02 Score=30.09 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh---hcchhHHHHHHHHHHHHHHHHHHHHH-HHhCCChhHHHH
Q 007826 462 HVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRII---ACGNTIATFAMGVRFLVGPAVMAAAS-MAVGLRGSLLHV 537 (588)
Q Consensus 462 gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~---~~~~k~vl~~sllKLIV~PlLa~ll~-~lLgL~~~~~~v 537 (588)
-+|+|+.+..+++.+..-.+-..|-..|+......... .....-.=.++.+|.++. .+++... ..+-.....+++
T Consensus 127 ~vP~p~~l~~pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCSGlr~l~~-~~~l~~l~~~l~~~~~~~r~ 205 (267)
T TIGR03109 127 AVPVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGLRYLIA-SLAIGALYAYLNFRSIKRRL 205 (267)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCCCHHHHHH-HHHHHHHHHHHhccchhHHH
Confidence 68999999999999999999999999998776643111 111122233788887664 4444332 223345555778
Q ss_pred HHHHhccchhhhH
Q 007826 538 AIVQAALPQGIVP 550 (588)
Q Consensus 538 lVLlAAmPtAv~~ 550 (588)
+++.++.|.+..+
T Consensus 206 ~l~~~ai~iai~a 218 (267)
T TIGR03109 206 LFFLVSIIVPILA 218 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 8889999987654
No 70
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.84 E-value=8.2e+02 Score=25.95 Aligned_cols=99 Identities=13% Similarity=-0.024 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHH
Q 007826 442 NPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVM 521 (588)
Q Consensus 442 NP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa 521 (588)
-|+++-+++|.++.-. ++--++.....-++.-..+.|+.+|.-=..-...+ ....+..+....++=.++.-++.
T Consensus 7 ~~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 7 LPIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLE--DLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred HHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--hhhhhHHHHHHHHHHHHHHHHHH
Confidence 3677888889888766 66556777778888889999998886543311111 01122222223333333444455
Q ss_pred HHHHHHhCCChhHHHHHHHHhccch
Q 007826 522 AAASMAVGLRGSLLHVAIVQAALPQ 546 (588)
Q Consensus 522 ~ll~~lLgL~~~~~~vlVLlAAmPt 546 (588)
+.+.+++..+.....+.++.++.+=
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~N 105 (385)
T PF03547_consen 81 FLLSRLFRLPKEWRGVFVLAASFGN 105 (385)
T ss_pred HHHHHhcCCCcccceEEEecccCCc
Confidence 5555667888887777777766543
No 71
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=25.78 E-value=9.3e+02 Score=27.91 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=27.0
Q ss_pred HHHHHHHH-hhhccccChhHhhHHHHHHHHHHhHHHHHHHHhc
Q 007826 20 AMILAYGS-VKWWKIFTPDQCSGINRFVALFAVPLLSFHFIST 61 (588)
Q Consensus 20 LIalGyla-~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~ 61 (588)
+..+|... -| .|+++.--.+.+++-==++..|...|.++-.
T Consensus 97 v~mLGigvAE~-SGll~alm~~~~~~~pk~llt~~vvfigi~s 138 (516)
T COG2978 97 VVMLGIGVAER-SGLLSALMRKLLNKVPKRLLTFTVVFIGILS 138 (516)
T ss_pred HHHHhhhhhhh-cccHHHHHHHHHhhcchHHHhhHHHHHHHHH
Confidence 33444443 45 4888777777777766677778888777754
No 72
>COG3329 Predicted permease [General function prediction only]
Probab=24.99 E-value=8.3e+02 Score=26.93 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 007826 430 LILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGL 490 (588)
Q Consensus 430 ~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~ 490 (588)
..+.+..+++ .+|.++-+++|++...++- ++.+|+.+.+.+.+ .-|++||.
T Consensus 6 ~fl~~f~~nL-~sP~llFf~~Gmlia~~ks--dl~iP~~i~~~lsl-------yLL~aIG~ 56 (372)
T COG3329 6 EFLMDFVGNL-LSPTLLFFILGMLIAAFKS--DLEIPEAIYQALSL-------YLLLAIGF 56 (372)
T ss_pred HHHHHHHhhh-ccchHHHHHHHHHHHHHhc--cccCchHHHHHHHH-------HHHHHHhc
Confidence 4555666664 6999999999999988732 56789988887764 45777875
No 73
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.81 E-value=68 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007826 69 FKFILADTVQKIIVLLLLAIWSKL 92 (588)
Q Consensus 69 ~~lllay~lg~livfll~~llar~ 92 (588)
|.+++.++++.++++++++...|.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555544444443
No 74
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=24.20 E-value=1e+03 Score=26.54 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhc--cch-hhhHHHHH
Q 007826 478 DAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAA--LPQ-GIVPFVFA 554 (588)
Q Consensus 478 ~aa~PLALf~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAA--mPt-Av~~~I~A 554 (588)
....|.-||.-|..+.... .++.++.+....+.=.++.=+..-.+.+++ +++.....+++.+| .|| ++...-+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~--l~~~~~~I~~La~~~v~it~~~~g~~~~~l-~~~i~~~~a~l~gAilspTDPv~v~~i~ 140 (429)
T COG0025 64 VLFLAILLFAGGLELDLRE--LRRVWRSILVLALPLVLITALGIGLLAHWL-LPGIPLAAAFLLGAILSPTDPVAVSPIF 140 (429)
T ss_pred HHHHHHHHHHhHhcCCHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHhHHhcCCCchhhHHHH
Confidence 8889999999999888764 234455444433333333322222223334 33444444444444 455 44444556
Q ss_pred HHcCCChhH
Q 007826 555 KEYNVHPDI 563 (588)
Q Consensus 555 ~~Yg~d~el 563 (588)
++++.+.+.
T Consensus 141 ~~~~vp~ri 149 (429)
T COG0025 141 KRVRVPKRI 149 (429)
T ss_pred hcCCCCHHH
Confidence 667776543
No 75
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=23.81 E-value=2.2e+02 Score=32.46 Aligned_cols=74 Identities=8% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHH
Q 007826 16 PLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSM---NFKFILADTVQKIIVLLLLAIWSKL 92 (588)
Q Consensus 16 PIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~dl~~v---~~~lllay~lg~livfll~~llar~ 92 (588)
++.+.+.+|.+++-. ...+.-..+. ..++.+++|.++|.+-.+.|++++ -...+.....++++++++..+...+
T Consensus 24 ~~v~lil~Gi~lg~~-~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~ 100 (525)
T TIGR00831 24 YPIALILAGLLLGLA-GLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNW 100 (525)
T ss_pred HHHHHHHHHHHHHhc-cccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 76
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=23.33 E-value=5.1e+02 Score=24.62 Aligned_cols=76 Identities=17% Similarity=0.130 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHh--HHHHHHHHhcCCCCCc--cHHHHHHHHHHHHHHHHHHHHHH
Q 007826 15 VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAV--PLLSFHFISTNDPYSM--NFKFILADTVQKIIVLLLLAIWS 90 (588)
Q Consensus 15 lPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~AL--PALLF~alA~~dl~~v--~~~lllay~lg~livfll~~lla 90 (588)
+-.+++|++.-.+.| +++++++..++.. ||=++ |...--+-.|.=...+ .+--+++...+..+.|+..-++.
T Consensus 38 iAMlLLi~~~~~l~k-~G~l~~~te~Gi~---FW~aMYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLAK-RGHLPQVTQFGVG---FWSAMYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChhHHhHHH---HHHccHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999 5999999999875 66664 5443322223333344 44455556666666677666666
Q ss_pred HHhc
Q 007826 91 KLSS 94 (588)
Q Consensus 91 r~~~ 94 (588)
|+-+
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 6543
No 77
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=23.31 E-value=1.1e+03 Score=27.35 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHh---------ccchhhhHHHHHHHcCCChh
Q 007826 521 MAAASMAVGLRGSLLHVAIVQA---------ALPQGIVPFVFAKEYNVHPD 562 (588)
Q Consensus 521 a~ll~~lLgL~~~~~~vlVLlA---------AmPtAv~~~I~A~~Yg~d~e 562 (588)
..-+..++|.+|+..|++.=.. -+|--.....++|||+.+..
T Consensus 411 fVPM~m~lg~sP~~tQ~aYRigDS~TN~ItPl~~yf~lil~~~qkY~k~~g 461 (502)
T PF03806_consen 411 FVPMFMLLGYSPALTQAAYRIGDSSTNIITPLMPYFPLILGFAQKYDKKAG 461 (502)
T ss_pred HHHHHHHcCCCHHHHHHHHHhccccccccCccHHHHHHHHHHHHHhCcCcc
Confidence 3344556789998888775332 34555667789999998754
No 78
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=23.18 E-value=3.8e+02 Score=26.83 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch
Q 007826 445 TYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQP 496 (588)
Q Consensus 445 IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~ 496 (588)
+.+.++|+++..+ .. .| .+..+.+.....-+-||.+|+.+...+
T Consensus 2 l~~li~Gi~lG~~----~~-~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~ 45 (191)
T PF03956_consen 2 LIALILGILLGYF----LR-PP---FSLIDKISTYALYLLLFLVGIDLGSNR 45 (191)
T ss_pred eeeHHHHHHHHHH----hc-cc---ccccccHHHHHHHHHHHHHHHHhcCCH
Confidence 3456777777776 21 12 222266777888999999999998764
No 79
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=22.97 E-value=4.3e+02 Score=24.85 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 007826 6 DLYHVLTAVVPLYVAMILAYGSVK 29 (588)
Q Consensus 6 ~M~~ILsivlPIFlLIalGyla~R 29 (588)
++..++++++-++...+.||...+
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888886666
No 80
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=21.36 E-value=1e+03 Score=25.43 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=61.9
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh---------hcchhHHHHHHHHHHHH-HHH-----HHHHHHHHhC
Q 007826 465 MPAIIARSIAILSDAGLGMAMFSLGLFMALQPRII---------ACGNTIATFAMGVRFLV-GPA-----VMAAASMAVG 529 (588)
Q Consensus 465 LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~---------~~~~k~vl~~sllKLIV-~Pl-----La~ll~~lLg 529 (588)
+-+.+++.+.. -..+..+|++.|..+-..++.. .-.+++.+..-+...+- .|- ....-..++|
T Consensus 104 ~~d~i~~~l~~--~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~lAl~PG~SRSGaTI~~~lllG 181 (270)
T COG1968 104 FKDFIKSHLFN--PRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLALIPGTSRSGATISGGLLLG 181 (270)
T ss_pred HHHHHHHHccC--hHHHHHHHHHHHHHHHHHHHhccccCcCChhhCCHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcC
Confidence 33455554443 4667777888787664432111 11345555544444333 352 2233346789
Q ss_pred CChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHH--HHHHHHHH
Q 007826 530 LRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA--VIFGMLVA 575 (588)
Q Consensus 530 L~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~--V~lSTLLS 575 (588)
++.+...=.-...++|+..-+..+.-.-..+.-.+... ..+.++.+
T Consensus 182 ~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~A 229 (270)
T COG1968 182 LSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVA 229 (270)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHH
Confidence 99888777777889999888888876655443333333 44444444
No 81
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=21.32 E-value=2e+02 Score=23.70 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHH
Q 007826 552 VFAKEYNVHPDILSTAVIFGMLVALP 577 (588)
Q Consensus 552 I~A~~Yg~d~elAAs~V~lSTLLSLp 577 (588)
=+|+++|.|+....-+.++.++++-+
T Consensus 19 GlA~~~gid~~~vRl~~v~l~~~~~~ 44 (61)
T PF04024_consen 19 GLAEYFGIDPTLVRLIFVVLTFFTGG 44 (61)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhH
Confidence 45888888888777777777776543
Done!