Query 007826
Match_columns 588
No_of_seqs 309 out of 1530
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.1 1.3E-09 4.3E-14 113.3 16.8 146 432-586 9-156 (332)
2 3zux_A Transporter, ASBTNM; tr 94.8 0.12 4.1E-06 53.4 10.4 69 72-143 231-302 (332)
3 2zy9_A Mg2+ transporter MGTE; 44.3 2.9E+02 0.0099 29.3 14.0 93 481-574 356-454 (473)
4 3rhw_A Avermectin-sensitive gl 17.9 3.1E+02 0.011 27.6 8.1 28 7-38 214-241 (347)
5 4ev6_A Magnesium transport pro 10.3 3.1E+02 0.011 27.6 5.4 20 48-67 287-306 (339)
6 1rqp_A 5'-fluoro-5'-deoxyadeno 9.9 49 0.0017 34.0 -0.7 54 223-277 121-180 (299)
7 2l8s_A Integrin alpha-1; trans 8.3 5.5E+02 0.019 20.0 4.8 33 66-98 6-41 (54)
8 2kdc_A Diacylglycerol kinase; 8.1 9.4E+02 0.032 21.2 7.0 63 520-582 40-115 (121)
9 1wa7_B TIP, hypothetical 28.7 7.5 1.5E+02 0.005 19.8 1.0 10 229-238 9-18 (26)
10 1wia_A Hypothetical ubiquitin- 6.9 2.7E+02 0.0093 22.4 2.7 31 195-227 65-95 (95)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.11 E-value=1.3e-09 Score=113.29 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=116.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHHHHH
Q 007826 432 LIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRII-ACGNTIATFAM 510 (588)
Q Consensus 432 lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~-~~~~k~vl~~s 510 (588)
++++. +.+.++..+.+++++++..+ .|+... .++..-..+.++.||..|+.+...+... ..+++......
T Consensus 9 l~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l 79 (332)
T 3zux_A 9 LSKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV 79 (332)
T ss_dssp HHHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence 44444 45678889999999888877 343221 2333445678899999999999875221 24567777889
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 007826 511 GVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL-PITLVYYILL 586 (588)
Q Consensus 511 llKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL-pi~i~l~lLL 586 (588)
+.+++++|++++++++++++++.....+++++++|++..+.+++..+|+|.+++...+.+||++++ .++++.++++
T Consensus 80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999996 5555555444
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.81 E-value=0.12 Score=53.45 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhcc--cchhHHHHHHHHHHHH
Q 007826 72 ILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGD--YSGSLMVQIVVLQCII 143 (588)
Q Consensus 72 llay~lg~livfll~~llar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~--~a~~~valiv~v~~lI 143 (588)
+....+-.++.|.++++++|+++.++.+ +...++ +..-|++ +|+|++...||+ ....+.++...+|++.
T Consensus 231 ~~~~~l~~~~~~~lg~~~~r~~~~~~~~--~~ti~~e~G~qNs~-lai~lA~~~F~~~p~~alp~~iy~~~q~i~ 302 (332)
T 3zux_A 231 FAVVVLHNGIGYLLGFFAAKWTGLPYDA--QKALTIEVGMQNSG-LAAALAAAHFAAAPVVAVPGALFSVWHNIS 302 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHCCCHH-HHHHHHHHHSTTCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhH--hhhhhhhhhhccHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3333333445566677778877765445 556666 8888884 999999999953 3455666666666654
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=44.26 E-value=2.9e+02 Score=29.34 Aligned_cols=93 Identities=11% Similarity=-0.051 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhcccchh--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCC----hhHHHHHHHHhccchhhhHHHHH
Q 007826 481 LGMAMFSLGLFMALQPR--IIACGNTIATFAMGVRFLVGPAVMAAASMAVGLR----GSLLHVAIVQAALPQGIVPFVFA 554 (588)
Q Consensus 481 ~PLALf~IG~sLa~~~~--~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~----~~~~~vlVLlAAmPtAv~~~I~A 554 (588)
--.++++=|+.+...+. ..+.-+|++....+.=+++..++......+++.. -....++.+..|.=.+....++.
T Consensus 356 q~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~a~~~g~~~p~~~ 435 (473)
T 2zy9_A 356 QSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLL 435 (473)
T ss_dssp HHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555655554321 1122356666666666666665555444445511 11233344455666777888999
Q ss_pred HHcCCChhHHHHHHHHHHHH
Q 007826 555 KEYNVHPDILSTAVIFGMLV 574 (588)
Q Consensus 555 ~~Yg~d~elAAs~V~lSTLL 574 (588)
.++|.||..++ ..++||+.
T Consensus 436 ~~~~~DPa~~s-~p~itt~~ 454 (473)
T 2zy9_A 436 RRLGVDPALVS-NPLVATLS 454 (473)
T ss_dssp HHHTCCGGGSC-HHHHHHHH
T ss_pred HHcCCCccccc-cchHHHHH
Confidence 99999999776 45677764
No 4
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=17.94 E-value=3.1e+02 Score=27.59 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccChhH
Q 007826 7 LYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQ 38 (588)
Q Consensus 7 M~~ILsivlPIFlLIalGyla~R~~gi~s~e~ 38 (588)
...+++.++|.++++.+-++.-+ +++++
T Consensus 214 ~~y~~~l~iP~~li~~ls~~sF~----lp~~~ 241 (347)
T 3rhw_A 214 SFYLLQLYIPSCMLVIVSWVSFW----FDRTA 241 (347)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTT----SCTTC
T ss_pred eEEEEEeehhHHHHHHHhheEEe----ccCCC
Confidence 35688999999999999999888 55554
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=10.26 E-value=3.1e+02 Score=27.62 Aligned_cols=20 Identities=5% Similarity=-0.254 Sum_probs=15.5
Q ss_pred HHHhHHHHHHHHhcCCCCCc
Q 007826 48 LFAVPLLSFHFISTNDPYSM 67 (588)
Q Consensus 48 ~~ALPALLF~alA~~dl~~v 67 (588)
-+.+|.-+..++....+..+
T Consensus 287 ~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 287 TIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHhhccCcCCCC
Confidence 35578888899999988744
No 6
>1rqp_A 5'-fluoro-5'-deoxyadenosine synthase; fluorinase, central 7 stranded beta sheets, anti-parallel BE sheets, transferase; HET: SAM; 1.80A {Streptomyces cattleya} SCOP: b.141.1.1 c.132.1.1 PDB: 1rqr_A* 2c2w_A* 2c4t_A* 2c4u_A 2c5b_A* 2c5h_A* 2cbx_A* 2cc2_A* 2v7v_A* 2v7x_A* 2v7w_A* 2v7t_A* 2v7u_A*
Probab=9.90 E-value=49 Score=34.04 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=34.6
Q ss_pred CCCCCCccCCCCCCCCccccccccCCCCCCCCC-CCCCccchh-----hhccCCCCCCCCC
Q 007826 223 GPNSGVSLTPRPSNLTNCEIYSLQSSRNHTPRG-SSFNHTDVF-----SMVNGKNMSNVSP 277 (588)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~ 277 (588)
||+.|+ |++-.....-.++|.+...++..++. +.|.-.|+| ...+|...+.+-+
T Consensus 121 gPDNGl-ls~v~~~~~~~~~~eI~~~~~~~~~~S~TFhGRDvFAp~AA~LA~G~~~~~lG~ 180 (299)
T 1rqp_A 121 APNNGL-LTTVLEEHGYLEAYEVTSPKVIPEQPEPTFYSREMVAIPSAHLAAGFPLSEVGR 180 (299)
T ss_dssp ECSSST-THHHHHHHCEEEEEECCCTTTSBSSCCTTCHHHHTTHHHHHHHHTTCCGGGSSC
T ss_pred EcCCCh-hHHHhhhcCccEEEEEeCcccccCCCCCCcccchhhHHHHHHHHcCCCHHHcCc
Confidence 588888 66644444456899997766554454 458888999 4555655544433
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.33 E-value=5.5e+02 Score=19.99 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=17.5
Q ss_pred Cc-cHHHHHHHHHHHHHHHHHH-HHH-HHHhcCCCC
Q 007826 66 SM-NFKFILADTVQKIIVLLLL-AIW-SKLSSSGSL 98 (588)
Q Consensus 66 ~v-~~~lllay~lg~livfll~-~ll-ar~~~~~~~ 98 (588)
.+ -|.++++...|.++..++. .+| +.+|+|+++
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 44 4666666666655544433 333 445665444
No 8
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.09 E-value=9.4e+02 Score=21.17 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhccch---hhhHHHHHH------HcCC----ChhHHHHHHHHHHHHHHHHHHHH
Q 007826 520 VMAAASMAVGLRGSLLHVAIVQAALPQ---GIVPFVFAK------EYNV----HPDILSTAVIFGMLVALPITLVY 582 (588)
Q Consensus 520 La~ll~~lLgL~~~~~~vlVLlAAmPt---Av~~~I~A~------~Yg~----d~elAAs~V~lSTLLSLpi~i~l 582 (588)
++..+..+++++......+++...+-. ..|+.+=+. +|+- -.|.+|.+|+++.+.++.+...+
T Consensus 40 ~~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~e~h~lak~AKD~aaaAVlv~~~~a~~v~~~i 115 (121)
T 2kdc_A 40 LAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCIL 115 (121)
T ss_dssp HHHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667887766555555443332 223333221 2222 15788999999988887655433
No 9
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=7.47 E-value=1.5e+02 Score=19.82 Aligned_cols=10 Identities=60% Similarity=1.072 Sum_probs=8.4
Q ss_pred ccCCCCCCCC
Q 007826 229 SLTPRPSNLT 238 (588)
Q Consensus 229 ~~~~~~~~~~ 238 (588)
.|-|||+||-
T Consensus 9 ~LPpRPaNLG 18 (26)
T 1wa7_B 9 PLPPRPANLG 18 (26)
T ss_dssp CCCCCTTSTT
T ss_pred CCCCCccccc
Confidence 5789999986
No 10
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=6.90 E-value=2.7e+02 Score=22.44 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=18.3
Q ss_pred cccCCCceEEEEeecCCcchhhhhcCCCCCCCC
Q 007826 195 EVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSG 227 (588)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (588)
.+.++-.||+.+++.......-. .|-+|+||
T Consensus 65 ~i~~g~~i~l~~~~~~~~~~~~~--~~~~~~~~ 95 (95)
T 1wia_A 65 NITNNCVIHCHRSPPGAAVSGPS--ASSGPSSG 95 (95)
T ss_dssp TCCTTEEEEEECCCCCCCCCCCC--CCCCCCCC
T ss_pred CCCCCCEEEEEECCCCCCCCCCC--CCCCCCCC
Confidence 35567789999887655443222 24455554
Done!