Query 007826
Match_columns 588
No_of_seqs 309 out of 1530
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 11:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007826.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007826hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74f1 f.23.25.1 (F:1-32) Pet 16.8 64 0.0046 20.7 3.3 21 9-29 4-24 (32)
2 d1pv7a_ f.38.1.2 (A:) Lactose 15.2 3.2E+02 0.024 23.1 12.3 36 102-137 347-385 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 14.7 3.7E+02 0.027 23.6 16.2 21 10-30 292-312 (447)
4 d1u00a2 b.130.1.1 (A:389-503) 9.4 91 0.0067 25.1 3.1 46 169-214 60-105 (115)
5 d1dkza2 b.130.1.1 (A:389-506) 8.6 95 0.0069 25.2 2.8 47 168-214 62-108 (118)
6 d2p02a3 d.130.1.1 (A:274-417) 7.1 64 0.0046 27.7 1.0 13 368-380 125-137 (144)
7 d1oedc_ f.36.1.1 (C:) Acetylch 6.6 1.1E+02 0.0084 26.6 2.6 23 7-29 2-24 (260)
8 d1mxaa3 d.130.1.1 (A:232-383) 6.2 76 0.0056 27.4 1.1 13 368-380 125-137 (152)
9 d2v7qi1 a.137.8.1 (I:1-47) Eps 6.0 96 0.007 21.8 1.3 19 187-205 27-45 (47)
10 d2iuba2 f.17.3.1 (A:286-349) M 4.9 2.2E+02 0.016 20.1 2.9 22 46-67 12-33 (64)
No 1
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.82 E-value=64 Score=20.68 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007826 9 HVLTAVVPLYVAMILAYGSVK 29 (588)
Q Consensus 9 ~ILsivlPIFlLIalGyla~R 29 (588)
++++.-+--|.+|++||.++-
T Consensus 4 eil~aa~lsfglifvgwglga 24 (32)
T d2e74f1 4 EMLYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhHHHH
Confidence 356666666999999998765
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.17 E-value=3.2e+02 Score=23.13 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=17.0
Q ss_pred hhhhhh-hcCCc-cc-cchHHHHHHhhcccchhHHHHHH
Q 007826 102 ITLFSL-STLPN-TL-VMGIPLLKGMYGDYSGSLMVQIV 137 (588)
Q Consensus 102 aaV~aL-asfsN-t~-fLGiPIl~~lyG~~a~~~valiv 137 (588)
+...++ .+..+ .+ .+|-++.-.++..-+......+.
T Consensus 347 ~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 555665 44544 33 45655555555443433333333
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.75 E-value=3.7e+02 Score=23.61 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007826 10 VLTAVVPLYVAMILAYGSVKW 30 (588)
Q Consensus 10 ILsivlPIFlLIalGyla~R~ 30 (588)
.+..+.-++..+..|++..|.
T Consensus 292 ~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 292 FLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hcchhhhhhhhhhhhhhhhhc
Confidence 333444556666777877774
No 4
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=9.40 E-value=91 Score=25.10 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=30.0
Q ss_pred ccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcch
Q 007826 169 AGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRS 214 (588)
Q Consensus 169 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (588)
+...+.|.-+.--=..-|+.+..-.-++++||.|||+.+.-.+-+.
T Consensus 60 N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~tg~~ 105 (115)
T d1u00a2 60 CRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVE 105 (115)
T ss_dssp SEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETTTCCE
T ss_pred ceEeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECCCCCE
Confidence 3444455444433344566667777889999999999876555443
No 5
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=8.64 E-value=95 Score=25.15 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=29.7
Q ss_pred CccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcch
Q 007826 168 TAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRS 214 (588)
Q Consensus 168 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (588)
++...+.|.-|..--..-|+....-.-++++||.|||+.+.-.+.+.
T Consensus 62 ~n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~ 108 (118)
T d1dkza2 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKE 108 (118)
T ss_dssp GSEEEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETTTCCE
T ss_pred CceEEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECCCCCE
Confidence 34445555554443333454446667889999999999976655543
No 6
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=7.11 E-value=64 Score=27.68 Aligned_cols=13 Identities=54% Similarity=1.227 Sum_probs=11.4
Q ss_pred cccccCcCccccC
Q 007826 368 DYGEFGRDEFSFG 380 (588)
Q Consensus 368 ~~~~~~~~~~~~~ 380 (588)
-||.|||++|+|-
T Consensus 125 aYGHFGR~~f~WE 137 (144)
T d2p02a3 125 AYGHFGRDSFPWE 137 (144)
T ss_dssp SSCSSSSTTCGGG
T ss_pred CccCCCCCCCCee
Confidence 5899999999994
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.60 E-value=1.1e+02 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 007826 7 LYHVLTAVVPLYVAMILAYGSVK 29 (588)
Q Consensus 7 M~~ILsivlPIFlLIalGyla~R 29 (588)
+..+++.++|.+++.++-++.-+
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~ 24 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFY 24 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHee
Confidence 35688999999999999888877
No 8
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=76 Score=27.37 Aligned_cols=13 Identities=46% Similarity=1.181 Sum_probs=11.4
Q ss_pred cccccCcCccccC
Q 007826 368 DYGEFGRDEFSFG 380 (588)
Q Consensus 368 ~~~~~~~~~~~~~ 380 (588)
-||.|||++|+|-
T Consensus 125 ayGHFGR~~f~WE 137 (152)
T d1mxaa3 125 AYGHFGREHFPWE 137 (152)
T ss_dssp SSCSSSCSSSGGG
T ss_pred CCCCCCCCCCCcc
Confidence 5999999999994
No 9
>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.02 E-value=96 Score=21.83 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=13.5
Q ss_pred CCCccccccccCCCceEEE
Q 007826 187 KEPLQTEAEVGEDGKLHVT 205 (588)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~ 205 (588)
|+|+++|||--+.-.+.+|
T Consensus 27 K~e~r~~A~~R~~~~~K~t 45 (47)
T d2v7qi1 27 KTEFKANAMKTSGSTIKIV 45 (47)
T ss_dssp CTTTTHHHHTSSCCCCEEE
T ss_pred ChHHHHHHHhcccceeeee
Confidence 7899999987665554444
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.90 E-value=2.2e+02 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=11.3
Q ss_pred HHHHHhHHHHHHHHhcCCCCCc
Q 007826 46 VALFAVPLLSFHFISTNDPYSM 67 (588)
Q Consensus 46 Vf~~ALPALLF~alA~~dl~~v 67 (588)
+--+.+|.-+..++-...++++
T Consensus 12 it~iflP~t~i~gifGMN~~~~ 33 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMNFEYM 33 (64)
T ss_dssp HHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHhhhccCCCCC
Confidence 3456678877778877766544
Done!